Query 042887
Match_columns 628
No_of_seqs 752 out of 4308
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.5E-58 3.2E-62 513.7 34.3 441 158-610 219-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.4E-54 1.2E-58 484.8 34.7 434 157-599 195-721 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2E-51 6.7E-56 452.2 36.0 425 158-596 53-562 (606)
4 3t6q_A CD180 antigen; protein- 100.0 5.1E-50 1.8E-54 440.9 36.2 423 162-592 33-534 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-50 1.4E-54 441.7 34.3 425 159-596 53-560 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-49 5.5E-54 442.9 35.6 434 160-597 95-625 (680)
7 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-48 1.3E-52 431.9 39.7 429 162-591 25-546 (680)
8 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-49 1.6E-53 447.6 29.6 426 162-596 24-562 (844)
9 2z63_A TOLL-like receptor 4, v 100.0 1E-47 3.5E-52 419.7 34.0 420 163-596 29-533 (570)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2E-47 6.8E-52 420.3 32.9 406 157-576 75-563 (606)
11 4eco_A Uncharacterized protein 100.0 2.9E-48 9.9E-53 426.6 25.9 418 162-597 81-603 (636)
12 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-46 4.6E-51 405.7 28.2 417 162-596 21-483 (520)
13 2z63_A TOLL-like receptor 4, v 100.0 4.3E-46 1.5E-50 406.8 31.2 402 157-578 47-538 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1E-46 3.6E-51 409.6 23.8 421 158-596 46-512 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 2.3E-46 7.8E-51 417.8 26.9 411 162-593 323-839 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-45 5.9E-50 400.0 28.0 402 157-576 69-515 (549)
17 4eco_A Uncharacterized protein 100.0 2E-45 6.8E-50 404.1 27.4 360 195-573 192-602 (636)
18 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-45 8.2E-50 417.1 26.1 402 158-576 69-565 (844)
19 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-44 1.8E-48 395.7 35.5 426 162-596 52-582 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 8.5E-45 2.9E-49 405.1 26.5 409 186-609 323-840 (876)
21 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-45 2E-49 393.0 24.0 396 157-575 40-485 (520)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-44 6.3E-49 392.3 28.0 411 162-596 52-512 (562)
23 3v47_A TOLL-like receptor 5B a 100.0 3E-43 1E-47 373.2 27.2 385 165-577 13-414 (455)
24 3v47_A TOLL-like receptor 5B a 100.0 1.5E-42 5.1E-47 367.8 29.6 372 162-551 30-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.6E-42 1.6E-46 373.4 24.8 398 156-576 70-515 (562)
26 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-40 8.4E-45 366.2 34.9 411 157-575 71-584 (635)
27 1o6v_A Internalin A; bacterial 100.0 9.3E-39 3.2E-43 338.9 31.4 347 159-572 43-389 (466)
28 1o6v_A Internalin A; bacterial 100.0 9.5E-39 3.3E-43 338.8 31.0 346 184-595 44-389 (466)
29 2id5_A Lingo-1, leucine rich r 100.0 2E-39 6.9E-44 345.7 25.0 346 213-597 14-359 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 7.6E-39 2.6E-43 341.2 27.4 351 165-555 14-364 (477)
31 1jl5_A Outer protein YOPM; leu 100.0 2.1E-39 7.3E-44 340.7 22.4 368 158-593 30-428 (454)
32 3bz5_A Internalin-J, INLJ; leu 100.0 8.2E-39 2.8E-43 336.5 24.9 352 155-577 35-393 (457)
33 3oja_B Anopheles plasmodium-re 100.0 1.1E-37 3.8E-42 340.6 24.1 344 160-606 49-392 (597)
34 1jl5_A Outer protein YOPM; leu 100.0 3E-37 1E-41 324.3 23.5 386 161-610 10-430 (454)
35 3bz5_A Internalin-J, INLJ; leu 100.0 4.8E-37 1.6E-41 323.0 24.7 353 174-598 30-390 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 1.5E-36 5.2E-41 314.6 28.1 312 160-549 43-354 (390)
37 3o6n_A APL1; leucine-rich repe 100.0 2.8E-37 9.6E-42 320.1 22.1 335 184-597 43-377 (390)
38 4fmz_A Internalin; leucine ric 100.0 3.4E-35 1.2E-39 299.6 27.1 306 159-571 41-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 5.5E-35 1.9E-39 298.0 27.8 284 158-522 62-345 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-35 9.8E-40 294.6 21.0 259 338-607 51-313 (313)
41 1z7x_W Ribonuclease inhibitor; 100.0 7.8E-38 2.7E-42 332.1 1.6 380 162-572 3-441 (461)
42 3oja_B Anopheles plasmodium-re 100.0 1.5E-34 5.1E-39 315.9 27.5 311 234-597 51-361 (597)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-33 9.6E-38 283.2 26.8 288 235-569 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 3.4E-33 1.2E-37 282.4 26.9 296 162-521 31-330 (330)
45 1xku_A Decorin; proteoglycan, 100.0 4.5E-33 1.5E-37 281.6 26.3 289 235-569 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-33 6.4E-38 284.5 22.8 294 163-521 34-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-36 6.5E-41 321.5 0.8 372 158-555 24-448 (461)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-33 3.7E-38 283.2 18.9 185 381-572 120-306 (313)
49 2z80_A TOLL-like receptor 2, v 100.0 5.8E-31 2E-35 268.6 16.8 278 235-575 32-318 (353)
50 2z66_A Variable lymphocyte rec 100.0 4.4E-30 1.5E-34 256.7 21.3 190 383-576 98-292 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 6.7E-30 2.3E-34 260.8 18.4 278 164-477 33-316 (353)
52 2z66_A Variable lymphocyte rec 100.0 1E-29 3.5E-34 254.0 19.4 263 235-557 29-297 (306)
53 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-29 4.1E-34 250.7 18.3 231 363-597 33-264 (285)
54 3ogk_B Coronatine-insensitive 100.0 2.3E-31 7.9E-36 291.6 3.5 403 160-573 71-528 (592)
55 3zyi_A Leucine-rich repeat-con 100.0 2.6E-28 8.9E-33 257.6 24.9 249 235-548 55-304 (452)
56 1ozn_A Reticulon 4 receptor; N 100.0 4.5E-29 1.5E-33 246.6 17.7 252 237-576 14-266 (285)
57 3zyj_A Leucine-rich repeat-con 100.0 3.5E-28 1.2E-32 255.7 25.3 248 235-547 44-292 (440)
58 3zyj_A Leucine-rich repeat-con 100.0 3.7E-28 1.3E-32 255.5 24.7 249 211-524 44-293 (440)
59 3zyi_A Leucine-rich repeat-con 100.0 3.6E-28 1.2E-32 256.5 24.3 247 164-447 56-303 (452)
60 3o53_A Protein LRIM1, AGAP0063 100.0 5.1E-30 1.7E-34 257.2 8.5 266 238-577 14-282 (317)
61 3ogk_B Coronatine-insensitive 100.0 8.6E-31 3E-35 287.1 2.8 396 160-568 110-548 (592)
62 3o53_A Protein LRIM1, AGAP0063 100.0 1.8E-29 6.3E-34 253.2 10.2 260 162-495 10-271 (317)
63 4fcg_A Uncharacterized protein 100.0 3.3E-28 1.1E-32 244.8 18.9 234 161-446 80-313 (328)
64 3g06_A SSPH2 (leucine-rich rep 100.0 4.3E-27 1.5E-31 254.4 27.5 109 434-559 201-309 (622)
65 4fcg_A Uncharacterized protein 100.0 9.7E-28 3.3E-32 241.3 18.0 201 363-571 105-314 (328)
66 3g06_A SSPH2 (leucine-rich rep 100.0 1.3E-26 4.3E-31 250.7 27.5 142 410-576 161-302 (622)
67 1wwl_A Monocyte differentiatio 99.9 6.4E-29 2.2E-33 248.6 5.9 252 158-476 39-310 (312)
68 1wwl_A Monocyte differentiatio 99.9 2.9E-28 1E-32 243.8 9.4 242 338-593 44-308 (312)
69 2p1m_B Transport inhibitor res 99.9 1.4E-29 4.8E-34 277.6 -0.9 398 160-572 103-545 (594)
70 3oja_A Leucine-rich immune mol 99.9 2.5E-27 8.6E-32 251.3 14.4 235 259-566 34-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 2.9E-27 1E-31 250.8 13.0 242 337-597 34-285 (487)
72 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.8E-33 270.4 -0.3 403 160-572 64-520 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 5.8E-26 2E-30 223.2 18.2 210 363-577 29-243 (276)
74 1p9a_G Platelet glycoprotein I 99.9 2.9E-25 9.9E-30 219.0 19.7 200 363-573 11-210 (290)
75 2o6q_A Variable lymphocyte rec 99.9 4.3E-25 1.5E-29 216.0 20.4 206 363-575 17-222 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 1.9E-25 6.3E-30 219.5 17.9 223 367-597 12-240 (276)
77 2o6q_A Variable lymphocyte rec 99.9 1E-24 3.6E-29 213.3 20.9 204 387-597 17-221 (270)
78 1p9a_G Platelet glycoprotein I 99.9 6.8E-24 2.3E-28 209.2 18.4 204 333-548 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 3.5E-24 1.2E-28 209.6 16.0 200 363-577 42-241 (272)
80 3goz_A Leucine-rich repeat-con 99.9 2.8E-25 9.5E-30 227.1 8.5 209 166-376 2-239 (362)
81 2ca6_A RAN GTPase-activating p 99.9 1.2E-25 4E-30 232.3 3.6 251 275-550 24-319 (386)
82 4glp_A Monocyte differentiatio 99.9 5.6E-24 1.9E-28 212.5 15.3 225 338-572 65-308 (310)
83 3goz_A Leucine-rich repeat-con 99.9 7.6E-25 2.6E-29 223.8 7.9 265 190-480 2-302 (362)
84 2xwt_C Thyrotropin receptor; s 99.9 1.3E-23 4.4E-28 201.6 14.9 199 363-568 32-236 (239)
85 3m19_A Variable lymphocyte rec 99.9 4.6E-23 1.6E-27 199.2 18.6 178 364-548 16-193 (251)
86 2xwt_C Thyrotropin receptor; s 99.9 9.8E-24 3.3E-28 202.4 13.3 198 386-592 31-237 (239)
87 3rfs_A Internalin B, repeat mo 99.9 4.1E-23 1.4E-27 202.0 17.9 201 366-576 23-223 (272)
88 3m19_A Variable lymphocyte rec 99.9 9.5E-23 3.2E-27 197.0 17.2 183 386-575 14-196 (251)
89 4glp_A Monocyte differentiatio 99.9 2.5E-23 8.5E-28 207.8 13.3 223 363-594 65-307 (310)
90 2ca6_A RAN GTPase-activating p 99.9 4.7E-25 1.6E-29 227.8 0.7 44 177-220 23-70 (386)
91 2ast_B S-phase kinase-associat 99.9 2.4E-23 8.2E-28 210.8 9.3 251 284-577 48-312 (336)
92 2ast_B S-phase kinase-associat 99.9 1.3E-23 4.4E-28 212.8 6.9 256 163-456 48-315 (336)
93 1h6u_A Internalin H; cell adhe 99.9 3.2E-22 1.1E-26 199.2 16.9 190 363-572 42-231 (308)
94 4ay9_X Follicle-stimulating ho 99.9 5.4E-22 1.9E-26 201.6 16.1 152 165-320 12-167 (350)
95 4ay9_X Follicle-stimulating ho 99.9 1.4E-21 4.7E-26 198.6 17.7 76 465-544 180-256 (350)
96 1h6u_A Internalin H; cell adhe 99.9 7.7E-22 2.6E-26 196.5 15.2 206 369-595 26-231 (308)
97 2o6s_A Variable lymphocyte rec 99.8 8E-21 2.8E-25 177.8 13.2 179 165-360 10-188 (208)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 3.9E-21 1.3E-25 181.3 10.6 151 390-547 15-166 (220)
99 2o6s_A Variable lymphocyte rec 99.8 8.4E-21 2.9E-25 177.7 12.3 173 390-576 11-183 (208)
100 2v9t_B SLIT homolog 2 protein 99.8 5.3E-21 1.8E-25 180.4 10.9 152 389-547 14-165 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 2.1E-20 7E-25 176.3 14.3 153 165-321 14-166 (220)
102 2xot_A Amphoterin-induced prot 99.8 3E-20 1E-24 189.5 15.3 176 390-572 22-203 (361)
103 3cvr_A Invasion plasmid antige 99.8 6.5E-20 2.2E-24 195.8 16.0 187 338-557 60-253 (571)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 8.6E-20 2.9E-24 172.0 14.9 153 165-321 14-167 (220)
105 1h6t_A Internalin B; cell adhe 99.8 8E-20 2.7E-24 180.2 14.5 173 382-572 42-214 (291)
106 2xot_A Amphoterin-induced prot 99.8 6.7E-20 2.3E-24 186.9 12.9 177 413-596 21-204 (361)
107 3e6j_A Variable lymphocyte rec 99.8 2E-19 7E-24 170.7 15.3 153 388-548 21-173 (229)
108 1h6t_A Internalin B; cell adhe 99.8 2.2E-19 7.6E-24 177.0 15.0 175 157-352 41-215 (291)
109 3e6j_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 169.1 15.2 153 164-321 21-173 (229)
110 3cvr_A Invasion plasmid antige 99.8 2.1E-19 7E-24 191.9 15.1 181 363-575 60-247 (571)
111 1m9s_A Internalin B; cell inva 99.8 4.4E-19 1.5E-23 191.6 16.2 187 367-573 26-212 (605)
112 3sb4_A Hypothetical leucine ri 99.8 3.1E-19 1.1E-23 179.6 11.8 101 410-516 226-327 (329)
113 1xeu_A Internalin C; cellular 99.8 8.6E-20 2.9E-24 177.1 6.9 172 159-352 16-187 (263)
114 4ezg_A Putative uncharacterize 99.8 9.4E-19 3.2E-23 162.1 13.1 154 159-321 41-195 (197)
115 1w8a_A SLIT protein; signaling 99.8 4.8E-19 1.6E-23 163.2 9.6 131 413-550 11-142 (192)
116 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.2E-23 160.6 12.5 153 383-571 41-194 (197)
117 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5.3E-23 187.4 14.4 173 363-553 44-216 (605)
118 1xeu_A Internalin C; cellular 99.8 3.9E-19 1.3E-23 172.4 8.4 168 363-549 20-187 (263)
119 3sb4_A Hypothetical leucine ri 99.8 1.4E-18 4.9E-23 174.8 11.8 284 161-493 24-328 (329)
120 1dce_A Protein (RAB geranylger 99.8 6.7E-21 2.3E-25 204.6 -5.6 108 465-577 444-552 (567)
121 1dce_A Protein (RAB geranylger 99.8 3.7E-20 1.3E-24 198.8 0.1 165 375-565 398-567 (567)
122 4b8c_D Glucose-repressible alc 99.7 6E-19 2E-23 195.5 4.0 181 378-572 216-405 (727)
123 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.3E-22 151.7 13.9 155 437-598 11-166 (192)
124 2ell_A Acidic leucine-rich nuc 99.7 1.8E-17 6E-22 149.3 9.5 134 162-322 24-162 (168)
125 2wfh_A SLIT homolog 2 protein 99.7 1.9E-17 6.6E-22 152.3 9.0 130 437-574 13-142 (193)
126 2ell_A Acidic leucine-rich nuc 99.7 6.3E-17 2.2E-21 145.6 12.3 137 210-352 24-162 (168)
127 4b8c_D Glucose-repressible alc 99.7 8.5E-18 2.9E-22 186.3 7.6 187 162-380 173-359 (727)
128 4fdw_A Leucine rich hypothetic 99.7 1.1E-15 3.8E-20 156.8 22.4 87 163-255 114-200 (401)
129 4fdw_A Leucine rich hypothetic 99.7 1.2E-15 4.2E-20 156.5 21.0 153 158-320 132-284 (401)
130 2je0_A Acidic leucine-rich nuc 99.7 9.1E-17 3.1E-21 141.4 9.7 128 434-567 17-149 (149)
131 4fs7_A Uncharacterized protein 99.7 3.8E-15 1.3E-19 153.7 23.2 147 403-562 246-392 (394)
132 2je0_A Acidic leucine-rich nuc 99.7 1.1E-16 3.8E-21 140.8 9.9 126 187-315 18-148 (149)
133 2wfh_A SLIT homolog 2 protein 99.7 3.3E-16 1.1E-20 144.0 12.9 127 165-296 13-139 (193)
134 2o6r_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 142.0 12.3 111 465-575 31-141 (177)
135 4b9d_A Serine/threonine-protei 99.7 7E-17 2.4E-21 160.7 7.4 94 47-145 23-118 (350)
136 4fih_A Serine/threonine-protei 99.7 9.5E-17 3.3E-21 159.5 7.8 92 47-143 73-164 (346)
137 2o6r_A Variable lymphocyte rec 99.7 7.1E-16 2.4E-20 140.0 12.8 132 164-299 9-140 (177)
138 4aw0_A HPDK1, 3-phosphoinositi 99.6 8.5E-17 2.9E-21 157.4 6.2 93 48-145 32-127 (311)
139 4asz_A BDNF/NT-3 growth factor 99.6 1.5E-16 5.2E-21 156.0 7.0 94 47-145 12-110 (299)
140 4fie_A Serine/threonine-protei 99.6 2.2E-16 7.6E-21 160.9 8.0 92 47-143 150-241 (423)
141 4aoj_A High affinity nerve gro 99.6 4E-16 1.4E-20 155.3 7.9 95 47-146 40-139 (329)
142 1a9n_A U2A', U2A'; complex (nu 99.6 4.2E-16 1.4E-20 141.3 7.3 133 430-572 15-154 (176)
143 4fs7_A Uncharacterized protein 99.6 3.3E-14 1.1E-18 146.6 21.9 318 174-568 59-376 (394)
144 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.9E-22 154.9 -4.1 152 161-320 17-185 (198)
145 1a9n_A U2A', U2A'; complex (nu 99.6 1.4E-15 4.8E-20 137.8 9.3 108 160-272 17-126 (176)
146 3hyh_A Carbon catabolite-derep 99.6 1.4E-15 4.9E-20 146.6 7.2 93 47-145 12-107 (275)
147 4g31_A Eukaryotic translation 99.6 2.1E-15 7.2E-20 148.1 7.9 98 48-145 5-110 (299)
148 3fpq_A Serine/threonine-protei 99.6 2.6E-15 8.9E-20 146.1 8.5 93 51-144 29-123 (290)
149 4gt4_A Tyrosine-protein kinase 99.6 2.2E-15 7.6E-20 148.4 7.5 94 47-145 25-124 (308)
150 1ds9_A Outer arm dynein; leuci 99.6 3.4E-17 1.2E-21 151.7 -6.1 161 382-571 14-185 (198)
151 3g39_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 130.4 10.6 108 465-575 12-119 (170)
152 4g3f_A NF-kappa-beta-inducing 99.5 3.1E-15 1.1E-19 148.1 5.7 89 47-145 57-145 (336)
153 3ubd_A Ribosomal protein S6 ki 99.5 1.3E-15 4.4E-20 149.0 2.8 93 48-145 24-121 (304)
154 4gt6_A Cell surface protein; l 99.5 8.8E-13 3E-17 135.9 23.7 154 157-317 58-215 (394)
155 2r9u_A Variable lymphocyte rec 99.5 2.7E-14 9.1E-19 128.8 10.5 106 466-574 16-121 (174)
156 3omv_A RAF proto-oncogene seri 99.5 3.4E-15 1.2E-19 146.4 5.0 97 43-148 31-129 (307)
157 4gt6_A Cell surface protein; l 99.5 3E-12 1E-16 131.8 25.6 337 174-547 51-391 (394)
158 4ase_A Vascular endothelial gr 99.5 8.5E-15 2.9E-19 146.9 6.2 103 40-146 56-165 (353)
159 3uto_A Twitchin; kinase, muscl 99.5 1.7E-14 5.8E-19 154.9 8.3 99 47-150 156-254 (573)
160 3g39_A Variable lymphocyte rec 99.5 7.7E-14 2.6E-18 125.3 10.9 105 164-272 11-115 (170)
161 4b99_A Mitogen-activated prote 99.5 2.2E-14 7.4E-19 146.5 7.8 97 48-145 54-153 (398)
162 2r9u_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 124.3 10.9 104 165-272 15-118 (174)
163 3hmm_A TGF-beta receptor type- 99.4 7.1E-14 2.4E-18 137.9 6.7 93 48-144 3-95 (303)
164 3un9_A NLR family member X1; l 99.4 3.2E-14 1.1E-18 144.6 1.2 62 386-447 72-139 (372)
165 3v5w_A G-protein coupled recep 99.4 2.2E-13 7.6E-18 145.5 7.1 94 47-145 188-287 (689)
166 3un9_A NLR family member X1; l 99.4 1.5E-14 5.2E-19 147.0 -2.2 172 185-358 71-260 (372)
167 4f9c_A Cell division cycle 7-r 99.4 6.3E-13 2.2E-17 134.2 7.7 91 45-142 18-112 (361)
168 4aw2_A Serine/threonine-protei 99.3 1.5E-13 5.1E-18 142.7 2.1 102 42-148 68-172 (437)
169 3fxz_A Serine/threonine-protei 99.3 2.3E-12 8E-17 127.2 9.8 94 46-144 18-111 (297)
170 2ifg_A High affinity nerve gro 99.3 3E-12 1E-16 129.6 10.5 103 438-547 12-116 (347)
171 3fe3_A MAP/microtubule affinit 99.3 1.3E-12 4.5E-17 130.8 6.9 95 46-145 13-109 (328)
172 3s95_A LIMK-1, LIM domain kina 99.3 2.7E-12 9.3E-17 127.7 8.6 96 47-147 9-104 (310)
173 3zgw_A Maternal embryonic leuc 99.3 2.8E-12 9.5E-17 129.2 8.1 95 46-145 8-103 (347)
174 2yab_A Death-associated protei 99.3 4.2E-12 1.4E-16 128.7 8.6 93 47-144 11-109 (361)
175 3v8s_A RHO-associated protein 99.3 1.8E-12 6.3E-17 133.4 5.9 96 43-143 64-162 (410)
176 2vd5_A DMPK protein; serine/th 99.3 2.2E-12 7.4E-17 132.9 6.1 100 41-145 54-156 (412)
177 2ifg_A High affinity nerve gro 99.3 9.9E-12 3.4E-16 125.8 10.7 103 414-523 12-116 (347)
178 2c30_A Serine/threonine-protei 99.3 8.1E-12 2.8E-16 124.8 9.9 103 36-143 23-135 (321)
179 3uqc_A Probable conserved tran 99.3 3.7E-12 1.3E-16 124.9 7.2 92 47-143 30-124 (286)
180 1o6l_A RAC-beta serine/threoni 99.3 4.3E-12 1.5E-16 127.4 7.3 93 47-144 4-99 (337)
181 1kob_A Twitchin; kinase, intra 99.3 5.7E-12 2E-16 128.9 8.3 97 47-148 50-146 (387)
182 1tki_A Titin; serine kinase, m 99.3 6.1E-12 2.1E-16 125.6 8.3 93 47-145 4-96 (321)
183 4h09_A Hypothetical leucine ri 99.3 8.3E-10 2.8E-14 113.0 24.2 145 404-557 211-355 (379)
184 3ugc_A Tyrosine-protein kinase 99.3 3.8E-12 1.3E-16 125.6 6.3 99 47-148 9-111 (295)
185 3qd2_B Eukaryotic translation 99.2 8.4E-12 2.9E-16 125.4 8.5 99 47-145 5-156 (332)
186 3c0i_A Peripheral plasma membr 99.2 5.6E-12 1.9E-16 127.7 7.0 93 47-144 23-120 (351)
187 4eqm_A Protein kinase; transfe 99.2 8.5E-12 2.9E-16 123.0 7.8 93 47-144 10-105 (294)
188 3tki_A Serine/threonine-protei 99.2 8.7E-12 3E-16 124.7 7.8 93 47-144 6-99 (323)
189 1fot_A TPK1 delta, CAMP-depend 99.2 7.9E-12 2.7E-16 124.5 7.5 93 47-144 5-100 (318)
190 2qkw_B Protein kinase; three-h 99.2 4.7E-12 1.6E-16 126.6 5.8 101 38-144 29-129 (321)
191 3uim_A Brassinosteroid insensi 99.2 9E-12 3.1E-16 124.9 7.6 107 33-145 15-122 (326)
192 2bdw_A Hypothetical protein K1 99.2 9E-12 3.1E-16 126.6 7.7 93 47-144 28-122 (362)
193 3cbl_A C-FES, proto-oncogene t 99.2 6.2E-12 2.1E-16 128.7 6.3 101 42-147 108-209 (377)
194 1xjd_A Protein kinase C, theta 99.2 8.3E-12 2.8E-16 125.7 7.0 96 44-144 13-112 (345)
195 4fr4_A YANK1, serine/threonine 99.2 7.3E-12 2.5E-16 127.7 6.7 93 47-144 14-109 (384)
196 3txo_A PKC-L, NPKC-ETA, protei 99.2 9.7E-12 3.3E-16 125.7 7.5 95 45-144 20-118 (353)
197 3kul_A Ephrin type-A receptor 99.2 1.1E-11 3.6E-16 124.2 7.5 96 47-147 48-147 (325)
198 3uc3_A Serine/threonine-protei 99.2 1.1E-11 3.9E-16 125.8 7.8 92 47-144 19-110 (361)
199 4euu_A Serine/threonine-protei 99.2 1.5E-11 5.3E-16 122.8 8.6 96 47-145 8-104 (319)
200 2y0a_A Death-associated protei 99.2 1.7E-11 5.7E-16 122.8 8.8 93 47-144 10-108 (326)
201 3hko_A Calcium/calmodulin-depe 99.2 9.4E-12 3.2E-16 125.8 7.0 95 44-143 22-121 (345)
202 4fvq_A Tyrosine-protein kinase 99.2 9.8E-12 3.4E-16 122.3 6.9 95 47-146 7-108 (289)
203 1rdq_E PKA C-alpha, CAMP-depen 99.2 1.2E-11 4E-16 125.0 7.0 93 47-144 40-135 (350)
204 3a8x_A Protein kinase C IOTA t 99.2 1.5E-11 5.1E-16 124.0 7.8 93 47-144 8-104 (345)
205 3soa_A Calcium/calmodulin-depe 99.2 1.1E-11 3.8E-16 129.1 6.9 95 46-145 9-105 (444)
206 3f3z_A Calcium/calmodulin-depe 99.2 1.4E-11 4.7E-16 120.4 7.1 93 47-144 8-100 (277)
207 4dc2_A Protein kinase C IOTA t 99.2 1.4E-11 4.7E-16 126.1 7.3 94 46-144 50-147 (396)
208 3p86_A Serine/threonine-protei 99.2 9.4E-12 3.2E-16 123.6 5.7 96 43-145 32-129 (309)
209 2x4f_A Myosin light chain kina 99.2 1.5E-11 5.1E-16 125.4 7.2 89 53-146 94-182 (373)
210 3vhe_A Vascular endothelial gr 99.2 9.7E-12 3.3E-16 126.5 5.7 103 40-146 14-123 (359)
211 2qol_A Ephrin receptor; recept 99.2 1.4E-11 4.8E-16 125.7 6.8 95 47-146 44-142 (373)
212 2j7t_A Serine/threonine-protei 99.2 1.8E-11 6.1E-16 121.2 7.4 95 46-145 17-111 (302)
213 4h09_A Hypothetical leucine ri 99.2 8E-09 2.7E-13 105.6 27.4 311 162-534 46-356 (379)
214 2zv2_A Calcium/calmodulin-depe 99.2 2.3E-11 8E-16 120.1 8.1 93 47-142 12-130 (298)
215 2ac3_A MAP kinase-interacting 99.2 2.6E-11 9E-16 120.9 8.3 93 47-144 11-105 (316)
216 4eut_A Serine/threonine-protei 99.2 2.2E-11 7.5E-16 125.5 8.0 96 47-145 8-104 (396)
217 3i6u_A CDS1, serine/threonine- 99.2 3.5E-11 1.2E-15 124.8 9.4 94 45-144 132-233 (419)
218 2y94_A 5'-AMP-activated protei 99.2 1.7E-11 5.7E-16 128.6 7.0 93 47-144 15-110 (476)
219 3gni_B Strad alpha; kinase fol 99.2 2.6E-11 9E-16 124.7 8.4 93 47-144 24-120 (389)
220 3is5_A Calcium-dependent prote 99.2 2.3E-11 7.9E-16 119.3 7.4 93 47-144 21-114 (285)
221 2jam_A Calcium/calmodulin-depe 99.2 2.2E-11 7.5E-16 120.7 7.3 94 46-144 7-100 (304)
222 3h4j_B AMPK kdaid, SNF1-like p 99.2 1.9E-11 6.4E-16 122.6 6.6 92 47-144 8-102 (336)
223 2a2a_A Death-associated protei 99.2 2.9E-11 1E-15 120.8 7.9 93 47-144 11-109 (321)
224 2w4o_A Calcium/calmodulin-depe 99.2 2.4E-11 8.3E-16 122.8 7.1 92 46-144 51-142 (349)
225 4hcu_A Tyrosine-protein kinase 99.2 3.7E-11 1.3E-15 116.7 8.0 93 47-146 9-101 (269)
226 3q5i_A Protein kinase; CDPK, m 99.2 2.2E-11 7.4E-16 129.7 6.8 95 45-144 33-140 (504)
227 2acx_A G protein-coupled recep 99.2 2.8E-11 9.5E-16 128.9 7.6 94 47-145 183-279 (576)
228 2pmi_A Negative RE, cyclin-dep 99.2 3.5E-11 1.2E-15 120.0 7.7 92 47-144 4-96 (317)
229 2w5a_A Serine/threonine-protei 99.2 3.9E-11 1.3E-15 117.3 7.9 95 47-144 5-101 (279)
230 2psq_A Fibroblast growth facto 99.2 2.3E-11 8E-16 123.9 6.5 94 47-145 80-182 (370)
231 2i0e_A Protein kinase C-beta I 99.2 2.1E-11 7.3E-16 123.1 6.1 94 46-144 18-115 (353)
232 3kk8_A Calcium/calmodulin depe 99.2 4.4E-11 1.5E-15 117.2 8.1 93 47-144 5-99 (284)
233 3lxl_A Tyrosine-protein kinase 99.2 3.4E-11 1.2E-15 120.7 7.4 97 47-146 22-122 (327)
234 3kfa_A Tyrosine-protein kinase 99.2 1.1E-11 3.7E-16 121.8 3.7 97 42-144 7-103 (288)
235 3l9p_A Anaplastic lymphoma kin 99.2 2E-11 6.7E-16 124.4 5.6 95 46-145 69-169 (367)
236 2clq_A Mitogen-activated prote 99.2 8.1E-11 2.8E-15 116.0 9.9 92 49-145 23-114 (295)
237 3a62_A Ribosomal protein S6 ki 99.2 2.4E-11 8.2E-16 121.7 6.1 93 47-144 16-115 (327)
238 3mwu_A Calmodulin-domain prote 99.1 3E-11 1E-15 128.0 7.1 94 46-144 20-115 (486)
239 3gen_A Tyrosine-protein kinase 99.1 2.2E-11 7.4E-16 119.4 5.4 99 42-147 18-116 (283)
240 3eqc_A Dual specificity mitoge 99.1 3.7E-11 1.3E-15 122.2 7.4 93 47-144 32-125 (360)
241 1opk_A P150, C-ABL, proto-onco 99.1 2.4E-11 8.1E-16 128.9 6.1 97 42-144 214-310 (495)
242 2qr7_A Ribosomal protein S6 ki 99.1 2.7E-11 9.4E-16 121.9 6.3 90 46-144 20-110 (342)
243 3lij_A Calcium/calmodulin depe 99.1 3.1E-11 1.1E-15 128.2 7.0 94 46-144 35-130 (494)
244 3o0g_A Cell division protein k 99.1 5.4E-11 1.9E-15 117.1 8.2 91 48-144 2-94 (292)
245 3ork_A Serine/threonine protei 99.1 1.8E-11 6.2E-16 121.8 4.7 97 47-144 11-110 (311)
246 3gbz_A Kinase, CMGC CDK; ssgci 99.1 2.5E-11 8.4E-16 121.8 5.8 97 43-145 29-127 (329)
247 3cok_A Serine/threonine-protei 99.1 3.9E-11 1.3E-15 117.3 7.0 95 46-145 9-106 (278)
248 2i1m_A Macrophage colony-stimu 99.1 3.4E-11 1.1E-15 121.1 6.7 99 42-145 40-145 (333)
249 1luf_A Muscle-specific tyrosin 99.1 3.6E-11 1.2E-15 121.4 6.8 97 44-145 43-145 (343)
250 2buj_A Serine/threonine-protei 99.1 4E-11 1.4E-15 119.6 7.0 97 46-143 27-123 (317)
251 4agu_A Cyclin-dependent kinase 99.1 6E-11 2.1E-15 117.9 8.2 93 47-144 2-96 (311)
252 3sxs_A Cytoplasmic tyrosine-pr 99.1 5.7E-11 1.9E-15 115.3 7.7 93 47-146 7-99 (268)
253 2ivs_A Proto-oncogene tyrosine 99.1 2E-11 6.9E-16 121.6 4.6 96 45-145 20-121 (314)
254 3kn6_A Ribosomal protein S6 ki 99.1 5E-11 1.7E-15 119.2 7.4 84 53-144 16-100 (325)
255 3c4z_A Rhodopsin kinase; Ser/T 99.1 4.6E-11 1.6E-15 126.8 7.5 92 48-144 185-279 (543)
256 3nyv_A Calmodulin-domain prote 99.1 4.5E-11 1.5E-15 126.7 7.4 94 47-145 25-121 (484)
257 3bhy_A Death-associated protei 99.1 5.6E-11 1.9E-15 116.4 7.6 91 48-143 5-101 (283)
258 1x8b_A WEE1HU, WEE1-like prote 99.1 6.5E-11 2.2E-15 116.2 8.1 93 47-144 10-105 (289)
259 2nru_A Interleukin-1 receptor- 99.1 1.4E-10 4.8E-15 115.0 10.6 104 34-144 11-124 (307)
260 4f0f_A Serine/threonine-protei 99.1 5.2E-11 1.8E-15 116.9 7.2 94 47-147 18-118 (287)
261 2r5t_A Serine/threonine-protei 99.1 2.5E-11 8.6E-16 123.5 5.1 94 46-144 36-133 (373)
262 3rp9_A Mitogen-activated prote 99.1 4.9E-11 1.7E-15 125.5 7.3 97 47-144 52-150 (458)
263 3kmu_A ILK, integrin-linked ki 99.1 3.7E-11 1.3E-15 116.8 5.9 94 47-145 9-104 (271)
264 2yex_A Serine/threonine-protei 99.1 7.3E-11 2.5E-15 115.1 7.9 93 47-144 6-99 (276)
265 2h6d_A 5'-AMP-activated protei 99.1 7.1E-11 2.4E-15 115.2 7.8 93 47-144 10-105 (276)
266 1k9a_A Carboxyl-terminal SRC k 99.1 6.2E-11 2.1E-15 124.2 7.8 93 45-145 190-282 (450)
267 2w1i_A JAK2; chromosomal rearr 99.1 5.7E-11 2E-15 119.0 7.2 97 47-146 40-140 (326)
268 2owb_A Serine/threonine-protei 99.1 6.2E-11 2.1E-15 119.2 7.4 94 46-144 39-135 (335)
269 2rku_A Serine/threonine-protei 99.1 6.5E-11 2.2E-15 116.7 7.4 93 47-144 14-109 (294)
270 3fdn_A Serine/threonine-protei 99.1 5.2E-11 1.8E-15 116.4 6.7 94 46-144 7-103 (279)
271 1zy4_A Serine/threonine-protei 99.1 7.4E-11 2.5E-15 116.7 7.8 98 47-145 5-110 (303)
272 1phk_A Phosphorylase kinase; g 99.1 7.9E-11 2.7E-15 116.3 8.0 94 46-144 15-118 (298)
273 4e5w_A Tyrosine-protein kinase 99.1 6.3E-11 2.1E-15 117.3 7.1 97 47-146 20-121 (302)
274 3n9x_A Phosphotransferase; mal 99.1 7.4E-11 2.5E-15 122.9 7.8 97 47-144 25-123 (432)
275 4ejn_A RAC-alpha serine/threon 99.1 3.2E-11 1.1E-15 126.4 4.9 93 47-144 147-242 (446)
276 3soc_A Activin receptor type-2 99.1 6E-11 2E-15 118.6 6.6 95 46-144 22-116 (322)
277 2wqm_A Serine/threonine-protei 99.1 1E-10 3.4E-15 116.3 8.2 93 46-143 30-125 (310)
278 1ob3_A PFPK5, cell division co 99.1 7.6E-11 2.6E-15 115.8 7.1 91 48-145 2-94 (288)
279 2h34_A Serine/threonine-protei 99.1 9.1E-11 3.1E-15 116.5 7.8 95 45-144 31-128 (309)
280 3a7i_A MST3 kinase, serine/thr 99.1 1.4E-10 4.8E-15 114.8 8.8 92 47-143 21-113 (303)
281 1t4h_A Serine/threonine-protei 99.1 1.5E-10 5.1E-15 113.8 8.9 96 48-144 26-123 (290)
282 2eue_A Carbon catabolite derep 99.1 1.1E-10 3.7E-15 113.8 7.8 92 47-144 12-106 (275)
283 3niz_A Rhodanese family protei 99.1 9.4E-11 3.2E-15 116.5 7.4 94 46-146 19-114 (311)
284 2vgo_A Serine/threonine-protei 99.1 7.7E-11 2.6E-15 115.5 6.6 93 47-144 13-108 (284)
285 2wei_A Calmodulin-domain prote 99.1 1.1E-10 3.7E-15 114.6 7.6 96 44-144 18-115 (287)
286 1rjb_A FL cytokine receptor; k 99.1 5.7E-11 1.9E-15 120.0 5.6 101 42-147 39-146 (344)
287 2ycf_A Serine/threonine-protei 99.1 9.5E-11 3.3E-15 117.1 7.0 93 46-144 8-108 (322)
288 1u5q_A Serine/threonine protei 99.1 8.5E-11 2.9E-15 118.6 6.6 92 48-145 54-148 (348)
289 2pvf_A Fibroblast growth facto 99.1 1E-10 3.5E-15 117.5 7.2 97 44-145 31-136 (334)
290 2yfx_A Tyrosine-protein kinase 99.1 7.7E-11 2.6E-15 118.1 6.2 95 46-145 28-128 (327)
291 1p4o_A Insulin-like growth fac 99.1 3.1E-11 1E-15 120.8 3.2 101 40-145 17-123 (322)
292 3pg1_A Mitogen-activated prote 99.1 2E-10 6.9E-15 116.8 9.3 104 40-145 14-128 (362)
293 1qcf_A Haematopoetic cell kina 99.1 6.1E-11 2.1E-15 124.5 5.5 96 41-144 181-276 (454)
294 3com_A Serine/threonine-protei 99.1 1.3E-10 4.4E-15 115.7 7.6 93 45-144 26-118 (314)
295 1t46_A HOMO sapiens V-KIT hard 99.1 4.7E-11 1.6E-15 118.8 4.3 99 43-146 18-123 (313)
296 2a19_B Interferon-induced, dou 99.1 1.4E-10 5E-15 113.5 7.8 94 47-144 10-114 (284)
297 3t9t_A Tyrosine-protein kinase 99.1 1.5E-10 5.3E-15 112.2 7.7 92 47-145 7-98 (267)
298 3dtc_A Mitogen-activated prote 99.1 1.2E-10 3.9E-15 113.4 6.8 90 47-143 6-99 (271)
299 1ua2_A CAK, cell division prot 99.1 1.3E-10 4.6E-15 117.3 7.4 95 45-145 7-106 (346)
300 3ttj_A Mitogen-activated prote 99.1 1.4E-10 4.8E-15 121.7 7.6 95 47-142 61-158 (464)
301 4aaa_A Cyclin-dependent kinase 99.1 1.3E-10 4.3E-15 116.7 7.0 92 47-143 24-117 (331)
302 2vuw_A Serine/threonine-protei 99.1 3.7E-11 1.3E-15 120.9 3.1 94 47-142 19-154 (336)
303 3mtl_A Cell division protein k 99.1 5E-11 1.7E-15 119.2 3.9 93 48-146 2-95 (324)
304 2izr_A Casein kinase I isoform 99.1 1.5E-10 5E-15 116.2 7.2 91 47-145 8-99 (330)
305 2y7j_A Phosphorylase B kinase 99.1 2E-10 7E-15 116.8 8.3 95 44-143 90-193 (365)
306 1fvr_A Tyrosine-protein kinase 99.1 1.6E-10 5.4E-15 115.8 7.3 93 48-145 25-121 (327)
307 3llt_A Serine/threonine kinase 99.1 9.4E-11 3.2E-15 119.2 5.8 103 36-145 23-130 (360)
308 1cm8_A Phosphorylated MAP kina 99.1 1.3E-10 4.4E-15 118.3 6.8 96 47-143 24-122 (367)
309 3tt0_A Basic fibroblast growth 99.1 1.6E-10 5.4E-15 118.5 7.3 98 43-145 64-170 (382)
310 3qup_A Tyrosine-protein kinase 99.1 1.4E-10 4.8E-15 116.0 6.8 101 45-145 20-126 (323)
311 3dls_A PAS domain-containing s 99.1 7.3E-11 2.5E-15 118.5 4.7 94 46-144 22-124 (335)
312 1mp8_A Focal adhesion kinase 1 99.1 6.3E-11 2.2E-15 115.9 4.1 94 46-145 13-110 (281)
313 2eva_A TAK1 kinase - TAB1 chim 99.1 1.4E-10 4.9E-15 114.9 6.7 88 47-145 7-94 (307)
314 1fmk_A C-SRC, P60-SRC, tyrosin 99.0 9.9E-11 3.4E-15 122.7 5.7 96 41-144 177-272 (452)
315 2wtk_C Serine/threonine-protei 99.0 2.7E-10 9.3E-15 112.8 8.6 93 47-143 4-100 (305)
316 2xir_A Vascular endothelial gr 99.0 1.1E-10 3.7E-15 116.4 5.6 103 40-146 19-128 (316)
317 1mqb_A Ephrin type-A receptor 99.0 1.5E-10 5.2E-15 116.2 6.7 95 47-146 43-142 (333)
318 3qyz_A Mitogen-activated prote 99.0 2.6E-10 9E-15 116.0 8.4 96 47-143 26-122 (364)
319 3q4u_A Activin receptor type-1 99.0 3E-10 1E-14 112.3 8.6 91 47-143 7-99 (301)
320 2vwi_A Serine/threonine-protei 99.0 4.6E-11 1.6E-15 118.3 2.7 95 44-143 11-106 (303)
321 2i6l_A Mitogen-activated prote 99.0 1.8E-10 6.2E-15 114.9 7.1 96 47-143 10-114 (320)
322 3nsz_A CK II alpha, casein kin 99.0 3.1E-10 1.1E-14 113.8 8.8 90 47-142 35-125 (330)
323 1qpc_A LCK kinase; alpha beta 99.0 1.2E-10 4E-15 113.9 5.4 94 43-144 8-101 (279)
324 3f66_A Hepatocyte growth facto 99.0 2.3E-10 7.7E-15 113.0 7.5 96 47-146 24-123 (298)
325 2pml_X PFPK7, Ser/Thr protein 99.0 1.4E-10 4.8E-15 117.3 6.0 88 47-141 30-134 (348)
326 3kex_A Receptor tyrosine-prote 99.0 1.9E-10 6.5E-15 115.1 6.8 96 47-148 12-112 (325)
327 2x7f_A TRAF2 and NCK-interacti 99.0 1.1E-10 3.6E-15 117.0 4.9 102 42-144 18-121 (326)
328 3eb0_A Putative uncharacterize 99.0 2.4E-10 8.3E-15 117.1 7.7 94 45-143 4-130 (383)
329 3oz6_A Mitogen-activated prote 99.0 2.4E-10 8.3E-15 117.4 7.5 95 45-143 6-103 (388)
330 2b9h_A MAP kinase FUS3, mitoge 99.0 2.8E-10 9.6E-15 115.3 7.8 96 47-143 10-106 (353)
331 3gxj_A TGF-beta receptor type- 99.0 2.7E-10 9.1E-15 112.7 7.3 92 47-144 2-95 (303)
332 2ra8_A Uncharacterized protein 99.0 3.1E-10 1E-14 114.1 7.7 193 162-359 107-329 (362)
333 2h8h_A Proto-oncogene tyrosine 99.0 1.2E-10 4E-15 124.7 4.9 97 40-144 259-355 (535)
334 3lm5_A Serine/threonine-protei 99.0 2.7E-10 9.4E-15 114.0 7.3 100 40-144 20-123 (327)
335 2r3i_A Cell division protein k 99.0 3.2E-10 1.1E-14 112.0 7.5 92 47-144 2-95 (299)
336 3poz_A Epidermal growth factor 99.0 2.4E-10 8.1E-15 114.5 6.6 96 47-148 14-114 (327)
337 1byg_A CSK, protein (C-termina 99.0 2.2E-10 7.5E-15 111.9 6.1 92 46-145 19-110 (278)
338 3p1a_A MYT1 kinase, membrane-a 99.0 3.1E-10 1E-14 112.8 7.3 93 48-146 57-152 (311)
339 3g33_A Cell division protein k 99.0 3.8E-10 1.3E-14 111.9 7.8 99 46-145 7-113 (308)
340 3brb_A Proto-oncogene tyrosine 99.0 3.2E-10 1.1E-14 112.8 7.2 102 43-144 29-135 (313)
341 3c1x_A Hepatocyte growth facto 99.0 2.1E-10 7.2E-15 116.8 5.9 94 49-146 90-187 (373)
342 3lxp_A Non-receptor tyrosine-p 99.0 3.1E-10 1E-14 113.2 6.6 92 50-144 33-129 (318)
343 3pfq_A PKC-B, PKC-beta, protei 99.0 3.2E-10 1.1E-14 124.5 7.2 95 46-145 339-437 (674)
344 1u59_A Tyrosine-protein kinase 99.0 4.3E-10 1.5E-14 110.3 7.4 94 47-146 8-105 (287)
345 3g2f_A Bone morphogenetic prot 99.0 6.2E-10 2.1E-14 111.9 8.7 95 46-145 11-107 (336)
346 3cc6_A Protein tyrosine kinase 99.0 2.7E-10 9.2E-15 111.4 5.8 94 46-145 10-107 (281)
347 3pls_A Macrophage-stimulating 99.0 4.7E-10 1.6E-14 110.7 7.5 95 49-147 22-120 (298)
348 2ozo_A Tyrosine-protein kinase 99.0 4.1E-10 1.4E-14 122.4 7.6 86 55-146 343-431 (613)
349 2fst_X Mitogen-activated prote 99.0 3.3E-10 1.1E-14 115.2 6.3 96 47-143 28-126 (367)
350 1xbb_A Tyrosine-protein kinase 99.0 2.1E-10 7.1E-15 112.9 4.7 93 46-144 14-111 (291)
351 1vzo_A Ribosomal protein S6 ki 99.0 2.4E-10 8.3E-15 115.7 5.2 93 47-144 53-153 (355)
352 3ll6_A Cyclin G-associated kin 99.0 5.3E-10 1.8E-14 112.4 7.6 96 47-143 27-126 (337)
353 3e7e_A HBUB1, BUB1A, mitotic c 99.0 4E-10 1.4E-14 114.8 6.7 91 45-143 62-160 (365)
354 1nxk_A MAP kinase-activated pr 99.0 4.5E-10 1.5E-14 115.6 6.9 93 47-145 60-154 (400)
355 2xrw_A Mitogen-activated prote 99.0 7.4E-10 2.5E-14 113.0 8.4 95 47-142 24-121 (371)
356 3lzb_A Epidermal growth factor 99.0 6.5E-10 2.2E-14 111.2 7.8 96 47-148 14-114 (327)
357 3lb7_A RAF proto-oncogene seri 99.0 6.5E-10 2.2E-14 110.1 7.7 95 45-148 33-129 (307)
358 3qa8_A MGC80376 protein; kinas 99.0 1.5E-10 5.2E-15 124.6 3.2 99 47-145 13-113 (676)
359 3mi9_A Cell division protein k 99.0 5.4E-10 1.9E-14 113.1 7.1 98 47-145 16-118 (351)
360 1b6c_B TGF-B superfamily recep 99.0 9.2E-10 3.2E-14 110.9 8.7 102 37-144 31-134 (342)
361 2ra8_A Uncharacterized protein 99.0 2.7E-10 9.2E-15 114.6 4.3 85 484-569 250-341 (362)
362 2pzi_A Probable serine/threoni 99.0 4.1E-10 1.4E-14 124.4 6.2 97 47-143 79-177 (681)
363 3byv_A Rhoptry kinase; malaria 99.0 1.9E-10 6.5E-15 117.6 3.1 97 47-144 72-193 (377)
364 3m2w_A MAP kinase-activated pr 99.0 8.2E-10 2.8E-14 109.0 7.6 93 47-145 16-110 (299)
365 3mdy_A Bone morphogenetic prot 98.9 1.1E-09 3.8E-14 110.0 8.4 99 40-144 29-129 (337)
366 3og7_A AKAP9-BRAF fusion prote 98.9 6E-10 2E-14 109.4 6.2 95 45-148 21-117 (289)
367 1csn_A Casein kinase-1; phosph 98.9 1.3E-09 4.3E-14 107.6 8.3 92 47-146 9-101 (298)
368 3an0_A Dual specificity mitoge 98.9 9.4E-10 3.2E-14 110.8 7.5 92 46-143 49-142 (340)
369 2iwi_A Serine/threonine-protei 98.9 3.9E-10 1.3E-14 112.1 4.4 97 43-144 26-133 (312)
370 2y4i_B KSR2, HKSR2, kinase sup 98.9 2.1E-10 7.3E-15 114.4 2.5 100 38-145 23-124 (319)
371 3coi_A Mitogen-activated prote 98.9 1.4E-09 4.6E-14 110.2 8.0 95 47-142 23-120 (353)
372 4exu_A Mitogen-activated prote 98.9 1.1E-09 3.9E-14 111.5 7.4 95 47-142 41-138 (371)
373 4fl3_A Tyrosine-protein kinase 98.9 1.3E-09 4.4E-14 118.8 8.1 85 54-144 375-463 (635)
374 3fme_A Dual specificity mitoge 98.9 9.9E-10 3.4E-14 107.9 6.5 91 47-143 6-98 (290)
375 1blx_A Cyclin-dependent kinase 98.9 1.8E-09 6E-14 108.0 7.9 99 46-145 9-113 (326)
376 2j0j_A Focal adhesion kinase 1 98.9 9.3E-10 3.2E-14 120.4 6.3 96 44-145 386-485 (656)
377 2zmd_A Dual specificity protei 98.9 1.3E-09 4.4E-14 111.8 6.8 91 48-145 56-150 (390)
378 3dbq_A Dual specificity protei 98.9 1.2E-09 4.1E-14 110.1 6.6 91 47-144 8-102 (343)
379 3aln_A Dual specificity mitoge 98.9 2.2E-09 7.7E-14 107.4 8.1 91 46-142 20-112 (327)
380 3e3p_A Protein kinase, putativ 98.9 2.9E-09 9.9E-14 108.1 8.4 100 40-141 15-116 (360)
381 1u46_A ACK-1, activated CDC42 98.9 1E-09 3.4E-14 107.9 4.7 93 47-145 17-115 (291)
382 1j1b_A Glycogen synthase kinas 98.9 2.3E-09 7.8E-14 111.1 7.4 90 48-142 54-144 (420)
383 3uzp_A CKI-delta, CKID, casein 98.9 3.1E-09 1.1E-13 104.6 7.7 93 47-146 8-100 (296)
384 4hgt_A Casein kinase I isoform 98.8 3.1E-09 1E-13 104.6 7.4 95 46-147 7-101 (296)
385 3op5_A Serine/threonine-protei 98.8 2.2E-09 7.4E-14 109.2 6.2 100 47-148 34-149 (364)
386 2v62_A Serine/threonine-protei 98.8 1.4E-09 4.7E-14 109.8 4.6 97 47-145 36-146 (345)
387 2jii_A Serine/threonine-protei 98.8 1.5E-09 5E-14 109.9 4.5 92 47-144 41-151 (352)
388 3rgf_A Cyclin-dependent kinase 98.8 4.1E-09 1.4E-13 108.9 7.9 91 48-144 20-113 (405)
389 1wak_A Serine/threonine-protei 98.8 2.5E-09 8.6E-14 110.1 5.8 94 47-143 36-137 (397)
390 3fhr_A MAP kinase-activated pr 98.8 4.2E-09 1.5E-13 105.7 7.2 94 46-145 26-121 (336)
391 3kvw_A DYRK2, dual specificity 98.8 6E-09 2.1E-13 108.2 8.4 92 47-145 96-193 (429)
392 3a99_A Proto-oncogene serine/t 98.8 1.9E-09 6.4E-14 107.5 4.2 97 43-144 38-143 (320)
393 3q60_A ROP5B; pseudokinase, tr 98.8 3.9E-09 1.3E-13 107.6 5.7 98 47-145 61-182 (371)
394 1z57_A Dual specificity protei 98.8 3.8E-09 1.3E-13 106.2 5.4 92 47-145 13-111 (339)
395 3sv0_A Casein kinase I-like; t 98.8 1.1E-08 3.7E-13 107.5 8.5 95 47-148 6-100 (483)
396 3cek_A Dual specificity protei 98.8 6E-09 2E-13 103.5 6.1 94 44-144 24-121 (313)
397 2dyl_A Dual specificity mitoge 98.8 6.2E-09 2.1E-13 103.6 6.2 89 47-141 24-114 (318)
398 1q8y_A SR protein kinase; tran 98.7 8.7E-09 3E-13 105.1 6.4 95 47-144 18-123 (373)
399 2rio_A Serine/threonine-protei 98.7 1.2E-08 3.9E-13 106.3 7.1 87 49-145 16-103 (434)
400 4e7w_A Glycogen synthase kinas 98.7 8.5E-09 2.9E-13 105.9 5.8 86 47-137 39-125 (394)
401 3en9_A Glycoprotease, O-sialog 98.7 3.5E-08 1.2E-12 105.2 9.8 86 51-143 339-432 (540)
402 1zar_A RIO2 kinase; serine kin 98.7 2.8E-08 9.5E-13 96.7 7.9 84 46-139 88-189 (282)
403 3p23_A Serine/threonine-protei 98.7 1.4E-08 4.9E-13 105.3 6.1 88 48-145 24-112 (432)
404 2vx3_A Dual specificity tyrosi 98.7 2E-08 7E-13 102.7 7.1 94 45-145 51-150 (382)
405 2eu9_A Dual specificity protei 98.6 2E-08 6.8E-13 101.6 5.4 91 47-144 18-115 (355)
406 3rw6_A Nuclear RNA export fact 98.6 1.2E-08 4.1E-13 97.1 2.6 102 162-265 141-257 (267)
407 1io0_A Tropomodulin; LRR prote 98.6 1.6E-08 5.6E-13 91.6 3.2 87 485-571 64-164 (185)
408 3rw6_A Nuclear RNA export fact 98.6 2.1E-08 7.2E-13 95.4 4.1 96 467-564 148-257 (267)
409 1io0_A Tropomodulin; LRR prote 98.6 1.5E-08 5E-13 91.9 1.7 46 178-223 28-78 (185)
410 4azs_A Methyltransferase WBDD; 98.3 2.4E-07 8E-12 99.4 3.9 87 54-145 240-337 (569)
411 1zth_A RIO1 serine protein kin 98.2 1.1E-06 3.6E-11 84.3 4.5 75 50-133 49-151 (258)
412 3e4g_A ATP synthase subunit S, 98.1 4.9E-07 1.7E-11 79.5 1.5 81 465-545 64-150 (176)
413 3e4g_A ATP synthase subunit S, 98.1 9.3E-07 3.2E-11 77.8 2.7 83 163-245 62-150 (176)
414 3dzo_A Rhoptry kinase domain; 98.0 5.8E-06 2E-10 85.2 5.8 57 48-104 78-137 (413)
415 4gyi_A RIO2 kinase; protein ki 97.9 5.2E-06 1.8E-10 83.1 4.2 92 48-140 95-201 (397)
416 1pgv_A TMD-1, tropomodulin TMD 97.5 5E-05 1.7E-09 68.1 4.0 67 278-346 65-135 (197)
417 1pgv_A TMD-1, tropomodulin TMD 97.5 6.1E-05 2.1E-09 67.5 4.5 83 162-244 41-136 (197)
418 3tm0_A Aminoglycoside 3'-phosp 97.2 0.00072 2.5E-08 64.6 7.8 91 44-141 10-101 (263)
419 3rfe_A Platelet glycoprotein I 97.1 0.0006 2.1E-08 57.0 6.0 56 490-547 12-68 (130)
420 3rfe_A Platelet glycoprotein I 96.9 0.0012 4.1E-08 55.1 6.1 57 514-572 12-69 (130)
421 3d1u_A Putative fructosamine-3 96.5 0.0046 1.6E-07 59.7 7.3 78 51-138 18-98 (288)
422 1nd4_A Aminoglycoside 3'-phosp 95.4 0.015 5.1E-07 55.0 5.3 82 48-138 20-103 (264)
423 3dxp_A Putative acyl-COA dehyd 93.1 0.1 3.6E-06 51.9 5.9 84 52-139 42-130 (359)
424 2olc_A MTR kinase, methylthior 92.1 0.15 5.1E-06 51.6 5.6 77 53-136 35-121 (397)
425 3f7w_A Putative fructosamine-3 91.4 0.4 1.4E-05 45.9 7.5 79 49-137 16-97 (288)
426 3cxl_A N-chimerin; SH2, RHO-GA 90.7 0.029 1E-06 58.0 -1.5 62 51-115 145-214 (463)
427 3jr1_A Putative fructosamine-3 88.7 0.93 3.2E-05 43.9 7.6 75 53-137 41-118 (312)
428 4gkh_A Aminoglycoside 3'-phosp 84.9 2 6.9E-05 40.3 7.6 86 48-142 25-112 (272)
429 3r70_A Aminoglycoside phosphot 83.8 1.7 5.7E-05 42.2 6.5 75 49-139 38-116 (320)
430 3ovc_A Hygromycin-B 4-O-kinase 80.6 3.1 0.00011 41.1 7.2 79 49-138 42-122 (362)
431 3tdw_A Gentamicin resistance p 78.5 3.6 0.00012 39.5 6.7 76 53-139 24-102 (306)
432 3sg8_A APH(2'')-ID; antibiotic 77.1 2.5 8.4E-05 40.6 5.1 78 53-139 25-105 (304)
433 3ats_A Putative uncharacterize 72.9 2.8 9.4E-05 41.3 4.3 85 54-140 26-123 (357)
434 2l2t_A Receptor tyrosine-prote 61.6 5.8 0.0002 25.2 2.5 11 10-20 28-38 (44)
435 2ks1_B Epidermal growth factor 60.8 5.7 0.00019 25.3 2.3 11 10-20 29-39 (44)
436 2q83_A YTAA protein; 2635576, 59.0 18 0.00061 34.9 7.1 79 54-138 38-119 (346)
437 2lz0_A Uncharacterized protein 55.2 15 0.0005 28.3 4.5 42 201-243 11-52 (100)
438 2lz0_A Uncharacterized protein 52.4 28 0.00097 26.7 5.7 49 172-221 6-54 (100)
439 2jwa_A Receptor tyrosine-prote 52.3 8.9 0.0003 24.3 2.2 13 9-21 28-40 (44)
440 2ppq_A HSK, HK, homoserine kin 51.8 56 0.0019 31.0 9.2 98 37-138 6-111 (322)
441 1zyl_A Hypothetical protein YI 37.8 67 0.0023 30.5 7.3 79 54-137 32-114 (328)
442 2pyw_A Uncharacterized protein 32.5 39 0.0013 33.8 4.7 73 53-134 39-122 (420)
443 2k1k_A Ephrin type-A receptor 28.3 24 0.00083 21.5 1.3 8 8-15 27-34 (38)
444 2qg7_A Ethanolamine kinase PV0 26.6 85 0.0029 31.8 6.0 74 54-137 114-188 (458)
445 1nw1_A Choline kinase (49.2 KD 25.8 1E+02 0.0035 30.9 6.4 74 53-137 78-159 (429)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.5e-58 Score=513.67 Aligned_cols=441 Identities=34% Similarity=0.544 Sum_probs=365.1
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCC-CCC
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNI-SSL 236 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l-~~L 236 (628)
++++++|++|++++|.+++.+|..|..+++|++|++++|.+++..|.. .+++|++|++++|.+++.+|..+... ++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 678899999999999999999999999999999999999988766654 67777777777777776677766654 777
Q ss_pred CEEEeecccCcccCChhhhhCCCCCcEEecccCccccccccc-ccCCCCCCEEEcccccceeecccccccCC-CCCEEEc
Q 042887 237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS-FSNASNLQVLDVYKNHFSGQVKIDFNRLS-NLSRLFL 314 (628)
Q Consensus 237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~L 314 (628)
++|++++|.+++.+|..+. .+++|++|++++|++++.+|.. +.++++|++|++++|++++..|..+..++ +|++|++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp SEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 7777777777766666554 3777777777777776555544 67777777777777777666666666665 6666666
Q ss_pred cCCcCCCcCCCCc--------------------cccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcc
Q 042887 315 SKNNLGTESTSDL--------------------DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQI 374 (628)
Q Consensus 315 ~~n~l~~~~~~~~--------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 374 (628)
++|++++..+..+ ..+..+.++++|+.|++++|.+++..+..+..+. +|+.|++++|.+
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l 454 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNML 454 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcc
Confidence 6666543211110 2334567788888999999888888888888776 889999999998
Q ss_pred eeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcc
Q 042887 375 SGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL 454 (628)
Q Consensus 375 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 454 (628)
.+.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|++++..|.++..+++|++|++++|++++..|..+
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 88888888889999999999999988888888899999999999999988889999999999999999999998899888
Q ss_pred cCCcchhcccceEEcCCCcCccccchhh----------------------------------------------------
Q 042887 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEV---------------------------------------------------- 482 (628)
Q Consensus 455 ~~l~~L~~l~~~L~Ls~N~l~~~~~~~~---------------------------------------------------- 482 (628)
..+++| +.|++++|++.+.+|..+
T Consensus 535 ~~l~~L----~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 535 GDCRSL----IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp GGCTTC----CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred cCCCCC----CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 888888 888999998887666433
Q ss_pred ------------------hccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887 483 ------------------GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544 (628)
Q Consensus 483 ------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 544 (628)
+.+++|++|||++|++++.+|..++.+++|+.|+|++|++++.+|..++.+++|+.|||++|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N 690 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcccCCCCCCCCCCCCC
Q 042887 545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCHFGR 610 (628)
Q Consensus 545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c~~~~ 610 (628)
++++.+|+.+..+++|++||+++|+++|.+|..+.+.++....+.|||.+||.. +++|....
T Consensus 691 ~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~ 752 (768)
T 3rgz_A 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN 752 (768)
T ss_dssp CCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred cccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999863 45898544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-54 Score=484.76 Aligned_cols=434 Identities=32% Similarity=0.498 Sum_probs=372.4
Q ss_pred ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL 236 (628)
Q Consensus 157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L 236 (628)
+..++++|++|++++|.+++.+|. ++++++|++|++++|.+++..|.+|+.+++|++|++++|.+++..|.. .+++|
T Consensus 195 ~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L 271 (768)
T 3rgz_A 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSL 271 (768)
T ss_dssp BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTC
T ss_pred CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCC
Confidence 447889999999999999988887 999999999999999999999999999999999999999999877765 89999
Q ss_pred CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccc-cccCCCCCEEEcc
Q 042887 237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLS 315 (628)
Q Consensus 237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~ 315 (628)
++|++++|.+++.+|..++..+++|++|++++|++++..|..|+++++|++|++++|++++..|.. |..+++|++|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 999999999999999998875699999999999999999999999999999999999999777655 9999999999999
Q ss_pred CCcCCCcCCCCccc-------------------cccccC--CCCCceeecccCCcccccchHHHhccccccEEEccCCcc
Q 042887 316 KNNLGTESTSDLDF-------------------LTLLTN--CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQI 374 (628)
Q Consensus 316 ~n~l~~~~~~~~~~-------------------~~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 374 (628)
+|.+++..+..+.. +..+.. +++|+.|++++|.+++..+..+..+. +|+.|++++|.+
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l 430 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYL 430 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEE
T ss_pred CCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcc
Confidence 99987433322211 111222 56788888888888777777777776 788888888888
Q ss_pred eeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcc
Q 042887 375 SGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSL 454 (628)
Q Consensus 375 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 454 (628)
++..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|.++
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 88888888888888888888888888888888888888888888888888888888888889999999998888888888
Q ss_pred cCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccc----------------------------
Q 042887 455 GNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTL---------------------------- 506 (628)
Q Consensus 455 ~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------------------------- 506 (628)
+.+++| +.|++++|++.+.+|..++.+++|++|++++|++++.+|..+
T Consensus 511 ~~l~~L----~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 511 GRLENL----AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp GGCTTC----CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred hcCCCC----CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 888888 888999999988888889899999999999998877666543
Q ss_pred ------------------------------------------cCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887 507 ------------------------------------------SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544 (628)
Q Consensus 507 ------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 544 (628)
..+++|++|||++|++++.+|..++.+++|+.|+|++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 23467888999999999999999999999999999999
Q ss_pred cccccCchhhhcccCCCeEeccCCcCcccCCCC-CCCCCCCcccccCCCCCcccCC
Q 042887 545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLCGGLE 599 (628)
Q Consensus 545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~~~ 599 (628)
++++.+|+.|.++++|+.||+++|+++|.+|.. +.++.++.+++++|+ +.|.+|
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~iP 721 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSGPIP 721 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEEECC
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc-ccccCC
Confidence 999999999999999999999999999988853 567788889998885 444444
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2e-51 Score=452.21 Aligned_cols=425 Identities=24% Similarity=0.266 Sum_probs=326.7
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~ 237 (628)
+.++++|++|||++|++++..|++|+++++|++|+|++|.+++..|.+|+.+++|++|++++|.+++..|..++++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 44556666666666666666666666666666666666666666666666666666666666666654455566666666
Q ss_pred EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCC--EEEcccccceeec----------------
Q 042887 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQ--VLDVYKNHFSGQV---------------- 299 (628)
Q Consensus 238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~L~~N~i~~~~---------------- 299 (628)
+|++++|.+++ ++...+..+++|++|++++|.+++..+..|+.+++|+ +|++++|.+++..
T Consensus 133 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 211 (606)
T 3t6q_A 133 SLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211 (606)
T ss_dssp EEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTT
T ss_pred EEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCC
Confidence 66666666652 2211111266666666666666655555566666555 5555555554443
Q ss_pred -----------------------------------------------------------ccccccCCCCCEEEccCCcCC
Q 042887 300 -----------------------------------------------------------KIDFNRLSNLSRLFLSKNNLG 320 (628)
Q Consensus 300 -----------------------------------------------------------~~~~~~l~~L~~L~L~~n~l~ 320 (628)
+..|..+++|++|++++|.++
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 333555667777777777666
Q ss_pred CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCch-hhhccCCcCeeeecccccc
Q 042887 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS-EIKNLVNINAFGVEYNQLT 399 (628)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~ 399 (628)
.+ +..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.+.++. .+..+++|++|++++|.+.
T Consensus 292 ~l-------p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 292 EL-------PSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CC-------CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred CC-------ChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 43 23466778899999999998888777777776 899999999988865554 4889999999999999998
Q ss_pred ccC--CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCc-ccCCcchhcccceEEcCCCcCcc
Q 042887 400 GTI--PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS-LGNCQNLMTLSRLLDLSGNLLGG 476 (628)
Q Consensus 400 ~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~l~~~L~Ls~N~l~~ 476 (628)
+.. +..+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+.. +..+++| +.|++++|.+.+
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~ 439 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL----KVLNLSHSLLDI 439 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC----CEEECTTCCCBT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC----CEEECCCCccCC
Confidence 765 778899999999999999999888889999999999999999998776544 7888888 899999999998
Q ss_pred ccchhhhccCCCCEeeCcCCcCccc---CCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchh
Q 042887 477 SIPLEVGNLRNLAEFDLSENHFSNE---IPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY 553 (628)
Q Consensus 477 ~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 553 (628)
..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..|+.
T Consensus 440 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred cCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 8888999999999999999999863 3367889999999999999999988999999999999999999999999999
Q ss_pred hhcccCCCeEeccCCcCcccCCCC-CCCCCCCcccccCCCCCcc
Q 042887 554 LENLLFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLCG 596 (628)
Q Consensus 554 ~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~ 596 (628)
+.+++.| +|++++|++++.+|.. +.+++++.++++|||+.|.
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 9999999 9999999999877753 5567899999999999984
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.1e-50 Score=440.91 Aligned_cols=423 Identities=19% Similarity=0.189 Sum_probs=285.1
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
..+++||+++|.+++..|..|.++++|++|+|++|.++++.|++|+++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 36899999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCC--EEEccCCcC
Q 042887 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS--RLFLSKNNL 319 (628)
Q Consensus 242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~--~L~L~~n~l 319 (628)
++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+ +|++++|.+
T Consensus 113 ~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999 45433445699999999999999986655666699999999999999999899999999999 999999999
Q ss_pred CCcCCCCcccc---------------------------------------------------------------------
Q 042887 320 GTESTSDLDFL--------------------------------------------------------------------- 330 (628)
Q Consensus 320 ~~~~~~~~~~~--------------------------------------------------------------------- 330 (628)
+...+..+...
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 87765543211
Q ss_pred ccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCC-cCCCCC
Q 042887 331 TLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIP-HAIGEL 409 (628)
Q Consensus 331 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l 409 (628)
..+..+++|+.|++++|.++.. +..+..+. +|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSEL-PSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCC-CSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHhccccCCCEEeccCCccCCC-Chhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 0123344455555555544422 22233332 45555555555554444455555555555555555443332 235555
Q ss_pred CCCCeEecccCcccccc--CccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccch-hhhccC
Q 042887 410 KNLQGLALVRNSLRGTI--PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLR 486 (628)
Q Consensus 410 ~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~ 486 (628)
++|++|++++|.+++.. +..+..+++|++|++++|++++..|..+..+++| +.|++++|++.+..+. .+..++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL----ELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC----SEEECTTCCEECCTTCCTTTTCT
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC----CeEECCCCcCCCcccchhhhCcc
Confidence 55555555555555443 4455555566666666665555555555555555 5556666665544333 255566
Q ss_pred CCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeee---cCccccCCCCCCEEECCCCcccccCchhhhcccCCCeE
Q 042887 487 NLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS---LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYL 563 (628)
Q Consensus 487 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 563 (628)
+|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..|..|..+++|++|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 666666666666555555566666666666666665541 22345556666666666666665556666666666666
Q ss_pred eccCCcCcccCCC-CCCCCCCCcccccCCC
Q 042887 564 NLSYNHFEGEVPR-KGVFGNRTGIHLIGNE 592 (628)
Q Consensus 564 ~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~ 592 (628)
++++|++++..|. ...++.+ .+++++|.
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 6666666655442 2333444 55555553
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-50 Score=441.73 Aligned_cols=425 Identities=18% Similarity=0.164 Sum_probs=281.4
Q ss_pred CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI 238 (628)
Q Consensus 159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~ 238 (628)
.++++|++||+++|.+++..|.+|.++++|++|+|++|.+++..|.+|+++++|++|++++|.+++..+..++++++|++
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 34444555555555554444444455555555555555554444444555555555555555544433344455555555
Q ss_pred EEeecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCCC----EEEcccccceeecccccccCCCCCEEE
Q 042887 239 ISLHSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQ----VLDVYKNHFSGQVKIDFNRLSNLSRLF 313 (628)
Q Consensus 239 L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~L~ 313 (628)
|++++|.+++ .+|..+. ++++|++|++++|++++..+..|+.+++|+ +|++++|.++++.+..|... +|++|+
T Consensus 133 L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~ 210 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210 (606)
T ss_dssp EECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEE
T ss_pred EeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeee
Confidence 5555554442 2343333 245555555555555444444444433332 45555555444444333322 455555
Q ss_pred ccCCcCCCc--------------------------------------------------CCCC-----------------
Q 042887 314 LSKNNLGTE--------------------------------------------------STSD----------------- 326 (628)
Q Consensus 314 L~~n~l~~~--------------------------------------------------~~~~----------------- 326 (628)
+++|.+.+. ....
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence 555543200 0000
Q ss_pred ------ccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccc
Q 042887 327 ------LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400 (628)
Q Consensus 327 ------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 400 (628)
+.....+..+++|+.|++++|.+... + .+ .++ +++.|++++|...+.. .+..+++|+.|++++|.+.+
T Consensus 291 ~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~l-p-~~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF-P-TL-DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EEESCCCCCCCCCCTTCCCSEEEEESCCCSSC-C-CC-CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred EecCccchhhhhccccccCCEEEcccccCccc-c-cC-CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 00000233344555555555555222 2 22 332 5666666666444333 45677888888888888876
Q ss_pred c--CCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccC-CcccCCcchhcccceEEcCCCcCccc
Q 042887 401 T--IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-SSLGNCQNLMTLSRLLDLSGNLLGGS 477 (628)
Q Consensus 401 ~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~L~Ls~N~l~~~ 477 (628)
. .|..+..+++|++|++++|.+++ .|..+..+++|+.|++++|++.+..| ..+..+++| +.|++++|++.+.
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL----LYLDISYTNTKID 439 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC----CEEECTTSCCEEC
T ss_pred CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC----CEEECcCCCCCcc
Confidence 5 36778888899999999998885 56788899999999999999987777 678888888 8999999999988
Q ss_pred cchhhhccCCCCEeeCcCCcCcc-cCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhc
Q 042887 478 IPLEVGNLRNLAEFDLSENHFSN-EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLEN 556 (628)
Q Consensus 478 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 556 (628)
.|..+.++++|++|++++|++++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..|.+
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 89999999999999999999997 47888999999999999999999999999999999999999999999988999999
Q ss_pred ccCCCeEeccCCcCcccCCCCCCCC-CCCcccccCCCCCcc
Q 042887 557 LLFLAYLNLSYNHFEGEVPRKGVFG-NRTGIHLIGNERLCG 596 (628)
Q Consensus 557 l~~L~~L~ls~N~l~~~~p~~~~~~-~l~~~~~~~n~~~c~ 596 (628)
+++|++|++++|+++..++....++ +++.+++.+||+.|.
T Consensus 520 l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999999999999996555545555 599999999999994
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-49 Score=442.85 Aligned_cols=434 Identities=22% Similarity=0.222 Sum_probs=285.4
Q ss_pred CcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCcc--CCCCCC
Q 042887 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIW--NISSLE 237 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~--~l~~L~ 237 (628)
++++|++|++++|++++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..+. .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 344444444444444444444444444444444444444444444444444444444444444433333222 234444
Q ss_pred EEEeecccCcccCChhhhh--------------------------CCCCCcEEecccCcccccccccccCCCC--CCEEE
Q 042887 238 IISLHSNRFEGSLPLNIGF--------------------------NIPNVNFLSVGQNNFTGSLPHSFSNASN--LQVLD 289 (628)
Q Consensus 238 ~L~L~~n~l~~~~~~~~~~--------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~ 289 (628)
+|++++|.+++..|..+.. ..++|+.|++++|.+++..|..|.+++. |++|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 4444444444222221110 0123344444444444444444544433 77777
Q ss_pred cccccceeecccccccCCCCCEEEccCCcCCCcCCCCccc-----------------------c----ccccCCCCCcee
Q 042887 290 VYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF-----------------------L----TLLTNCSQMEML 342 (628)
Q Consensus 290 L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------------~----~~l~~~~~L~~L 342 (628)
+++|++++..+..|..+++|++|++++|.+....+..+.. + ..+..+++|+.|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 7777777666667777777777777777766544322211 0 034556777777
Q ss_pred ecccCCcccccchHHHhcc---------------------------ccccEEEccCCcceeeCchhhhccCCcCeeeecc
Q 042887 343 YLNTNKFGGVFLRSIANLS---------------------------AKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY 395 (628)
Q Consensus 343 ~l~~n~~~~~~~~~~~~~~---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 395 (628)
++++|.+.+..+..+..+. .+++.|++++|++++..|..+..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 7777777766555444432 2455556666666666677777777777777777
Q ss_pred ccccccCC-cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccc--cccCCcccCCcchhcccceEEcCCC
Q 042887 396 NQLTGTIP-HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ--GNVPSSLGNCQNLMTLSRLLDLSGN 472 (628)
Q Consensus 396 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~l~~~L~Ls~N 472 (628)
|.+.+.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.++ +..|..+.++++| +.|++++|
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L----~~L~Ls~N 490 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL----TILDLSNN 490 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC----CEEECCSS
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC----CEEECCCC
Confidence 77765444 56777777777777777777777777777777888888777775 4567778888888 88999999
Q ss_pred cCccccchhhhccCCCCEeeCcCCcCcccCC--------ccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIP--------VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544 (628)
Q Consensus 473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 544 (628)
++++..+..|.++++|++|++++|++++..+ ..+.++++|++|++++|+++...+..|.++++|+.|+|++|
T Consensus 491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 9998778889999999999999999986422 23788899999999999999655567999999999999999
Q ss_pred cccccCchhhhcccCCCeEeccCCcCcccCCCC-C-CCCCCCcccccCCCCCccc
Q 042887 545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-G-VFGNRTGIHLIGNERLCGG 597 (628)
Q Consensus 545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~-~~~~l~~~~~~~n~~~c~~ 597 (628)
++++.++..|.++++|+.|++++|++++..|.. + .+++++.+++++||+.|..
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999888888999999999999999999876643 2 4788999999999999964
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-48 Score=431.88 Aligned_cols=429 Identities=20% Similarity=0.214 Sum_probs=271.6
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
+++++||+++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+|++|.++...+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46777888888877777777777788888888888777777777777888888888888777555556777888888888
Q ss_pred ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccc--cCCCCCEEEccCCcC
Q 042887 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN--RLSNLSRLFLSKNNL 319 (628)
Q Consensus 242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~--~l~~L~~L~L~~n~l 319 (628)
++|.++ .++...+..+++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.+
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 888776 45544444577888888888877777777777778888888888877766665554 346777888887777
Q ss_pred CCcCCCCcccccccc---------------------CCCCCceeecccCCcccccchHHHhcc-ccccEEEccCCcceee
Q 042887 320 GTESTSDLDFLTLLT---------------------NCSQMEMLYLNTNKFGGVFLRSIANLS-AKITVIGMGDNQISGT 377 (628)
Q Consensus 320 ~~~~~~~~~~~~~l~---------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~ 377 (628)
++..+..+.....+. ..++|+.|++++|.+.+..+..+..+. ++++.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 766554332221111 125677777777777776666666554 2477777777777777
Q ss_pred CchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCcccc-----ccC----ccccCCCCCCeEecCCccccc
Q 042887 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRG-----TIP----DTLGNLTLLNRLFLGFNNLQG 448 (628)
Q Consensus 378 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~L~~N~l~~ 448 (628)
.|..+..+++|+.|++++|++.+..|..|..+++|+.|++++|...+ .+| ..|..+++|++|++++|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 77777777777777777777776666555555555555555443221 111 134444444444444444444
Q ss_pred ccCCcccCCcchhc------------------------ccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCC-
Q 042887 449 NVPSSLGNCQNLMT------------------------LSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP- 503 (628)
Q Consensus 449 ~~~~~~~~l~~L~~------------------------l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 503 (628)
..+..+.++++|+. -++.|++++|++++..|..|..+++|++|++++|.+++.+|
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 44444443333310 01445555555555555556666666666666666654333
Q ss_pred ccccCCCCCCeEECcCceeee--------------------------ecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887 504 VTLSACTTLEYLHLQGNSFSG--------------------------SLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557 (628)
Q Consensus 504 ~~~~~l~~L~~L~Ls~N~l~~--------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 557 (628)
..+.++++|++|++++|++.+ ..|..+..+++|+.|++++|++++..+..|.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 455555666666666665543 345556666677777777777776666667777
Q ss_pred cCCCeEeccCCcCcccCC---------CCCCCCCCCcccccCC
Q 042887 558 LFLAYLNLSYNHFEGEVP---------RKGVFGNRTGIHLIGN 591 (628)
Q Consensus 558 ~~L~~L~ls~N~l~~~~p---------~~~~~~~l~~~~~~~n 591 (628)
++|++|++++|++++..+ ....+++++.+++++|
T Consensus 504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 777777777777665321 1234456666777666
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-49 Score=447.60 Aligned_cols=426 Identities=18% Similarity=0.159 Sum_probs=236.7
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccc-cccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRI-PDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS 240 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~ 240 (628)
+++++|||++|.|++..|..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|.+|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 34555555555555555555555555555555555322222 44555555555555555555544455555555555555
Q ss_pred eecccCcccCChh-hhhCCCCCcEEecccCccccccc-ccccCCCCCCEEEcccccceeecccccccC--CC--------
Q 042887 241 LHSNRFEGSLPLN-IGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQVKIDFNRL--SN-------- 308 (628)
Q Consensus 241 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~-------- 308 (628)
|++|.+++.+|.. .+..+++|++|+|++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 5555555333322 22335555555555555554333 345555555555555555554444444443 44
Q ss_pred ----------------------CCEEEccCCcCCCcCCCCcccc------------------------------ccccC-
Q 042887 309 ----------------------LSRLFLSKNNLGTESTSDLDFL------------------------------TLLTN- 335 (628)
Q Consensus 309 ----------------------L~~L~L~~n~l~~~~~~~~~~~------------------------------~~l~~- 335 (628)
|++|++++|.++......+... ..+..
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 5555555554433221111000 00111
Q ss_pred -CCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCe
Q 042887 336 -CSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQG 414 (628)
Q Consensus 336 -~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 414 (628)
.++|+.|++++|.+.+..+..+..+. +++.|++++|.+.+..|..|..+++|+.|++++|.+.+..|..|..+++|+.
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred ccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 14566666666666555555555444 5666666666666666666666666666666666666555666666666666
Q ss_pred EecccCccccccCccccCCCCCCeEecCCcccccccC------------------Cc----------------------c
Q 042887 415 LALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP------------------SS----------------------L 454 (628)
Q Consensus 415 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------~~----------------------~ 454 (628)
|++++|.+.+..+..|..+++|++|++++|.+++... .. +
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence 6666666665555566666666666666666553210 00 0
Q ss_pred cCCcchhcccceEEcCCCcCccccch-hhhccCCCCEeeCcCCcCc-----ccCCccccCCCCCCeEECcCceeeeecCc
Q 042887 455 GNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLRNLAEFDLSENHFS-----NEIPVTLSACTTLEYLHLQGNSFSGSLPL 528 (628)
Q Consensus 455 ~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 528 (628)
..+++| +.|++++|++++..+. .+..+++|++|++++|.++ +..+..|.++++|+.|+|++|++++..|.
T Consensus 423 ~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 498 (844)
T 3j0a_A 423 LRVPHL----QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498 (844)
T ss_dssp TTCTTC----CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT
T ss_pred hcCCcc----ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh
Confidence 011111 3333333333322111 1223344444444444443 22234466677788888888888777777
Q ss_pred cccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcc
Q 042887 529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCG 596 (628)
Q Consensus 529 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~ 596 (628)
.|..+++|+.|+|++|++++.++..+. ++|+.|++++|++++.+|.. +.+++.++++|||+.|.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICE 562 (844)
T ss_dssp SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCS
T ss_pred HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccc
Confidence 788888888888888888876666665 67888888888888877743 67899999999999994
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-47 Score=419.72 Aligned_cols=420 Identities=22% Similarity=0.197 Sum_probs=311.6
Q ss_pred cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887 163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH 242 (628)
Q Consensus 163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~ 242 (628)
.++.||+++|.+++..+.+|.++++|++|+|++|.++++.+..|+++++|++|+|++|.++...|.+|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 56777777777776666677777777777777777776666677777777777777777776666777777777777777
Q ss_pred cccCcccCChhhhhCCCCCcEEecccCccccc-ccccccCCCCCCEEEcccccceeecccccccCCCC----CEEEccCC
Q 042887 243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNL----SRLFLSKN 317 (628)
Q Consensus 243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L----~~L~L~~n 317 (628)
+|.++ .++...+..+++|++|++++|.+++. .|..|+++++|++|++++|++++..+..|..+++| +.|++++|
T Consensus 109 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 77776 44443344577777777777777653 46677777777777777777776666666666666 67777777
Q ss_pred cCCCcCCCCccc--------------------------------------------------------------------
Q 042887 318 NLGTESTSDLDF-------------------------------------------------------------------- 329 (628)
Q Consensus 318 ~l~~~~~~~~~~-------------------------------------------------------------------- 329 (628)
.++.+.+..+..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 666544332211
Q ss_pred -------cccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccC
Q 042887 330 -------LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI 402 (628)
Q Consensus 330 -------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 402 (628)
+..+..+++|+.|++++|.+... +..+... +++.|++++|.+. .+|. ..+++|+.|++++|.+.+..
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSC-CBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhh-hhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 11223345556666666655432 2222222 5666666666655 2332 35566666666666665444
Q ss_pred CcCCCCCCCCCeEecccCcccccc--CccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc-
Q 042887 403 PHAIGELKNLQGLALVRNSLRGTI--PDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP- 479 (628)
Q Consensus 403 ~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~- 479 (628)
+. ..+++|++|++++|.+++.. |..+..+++|++|++++|++++..+. +..+++| +.|++++|.+.+..+
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L----~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQL----EHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTC----CEEECTTSEEESCTTS
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCC----CEEEccCCccccccch
Confidence 33 67889999999999988654 67788999999999999999865554 8888888 889999999987655
Q ss_pred hhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceee-eecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887 480 LEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS-GSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558 (628)
Q Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 558 (628)
..+..+++|++|++++|.+.+..|..+.++++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..|..++
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 56889999999999999999888999999999999999999997 57889999999999999999999988899999999
Q ss_pred CCCeEeccCCcCcccCCC-CCCCCCCCcccccCCCCCcc
Q 042887 559 FLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGNERLCG 596 (628)
Q Consensus 559 ~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~ 596 (628)
+|++|++++|++++.+|. ...+++++.+++++|++.|.
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 999999999999987764 35678899999999999885
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-47 Score=420.28 Aligned_cols=406 Identities=19% Similarity=0.187 Sum_probs=342.5
Q ss_pred ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCC
Q 042887 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISS 235 (628)
Q Consensus 157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~ 235 (628)
.+.++++|++|+|++|.+++..|+.|+++++|++|++++|.+++..+..|+++++|++|++++|.+++ .+|..|+++++
T Consensus 75 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 75 AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 36788999999999999999989999999999999999999998888899999999999999999986 56999999999
Q ss_pred CCEEEeecccCcccCChhhhhCCCCC----cEEecccCcccccccccccCCCCCCEEEccccccee--------------
Q 042887 236 LEIISLHSNRFEGSLPLNIGFNIPNV----NFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG-------------- 297 (628)
Q Consensus 236 L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-------------- 297 (628)
|++|++++|.+++..|..+. .+.+| .+|++++|.+++..+..+... +|++|++++|.+++
T Consensus 155 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 232 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVNDLQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLH 232 (606)
T ss_dssp CCEEECCSSCCCEECTTTTH-HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCE
T ss_pred CCEEEccCCcceecChhhhh-hhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccc
Confidence 99999999999955454443 35555 489999999997777766655 89999988886531
Q ss_pred --------------------------------------------ecccccccCCCCCEEEccCCcCCCcCCCC-------
Q 042887 298 --------------------------------------------QVKIDFNRLSNLSRLFLSKNNLGTESTSD------- 326 (628)
Q Consensus 298 --------------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------- 326 (628)
..+. +..+++|+.|++++|.+..++.-.
T Consensus 233 ~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~ 311 (606)
T 3vq2_A 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311 (606)
T ss_dssp EEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCCCCCTTCCCSE
T ss_pred cccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhhhccccccCCE
Confidence 1111 334445555555555444332000
Q ss_pred -------c-cccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceee--CchhhhccCCcCeeeeccc
Q 042887 327 -------L-DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT--IPSEIKNLVNINAFGVEYN 396 (628)
Q Consensus 327 -------~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n 396 (628)
+ ..+ .+ .+++|+.|++++|...+.. .+..++ +++.|++++|.+++. .+..+..+++|+.|++++|
T Consensus 312 L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 312 LSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp EEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred EEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 0 111 23 7789999999999654433 333444 899999999999977 4889999999999999999
Q ss_pred cccccCCcCCCCCCCCCeEecccCccccccC-ccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCc
Q 042887 397 QLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLG 475 (628)
Q Consensus 397 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~ 475 (628)
.+.+ .|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++++..|..+.++++| +.|++++|++.
T Consensus 387 ~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~ 461 (606)
T 3vq2_A 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL----NTLKMAGNSFK 461 (606)
T ss_dssp SEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC----CEEECTTCEEG
T ss_pred cccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC----CEEECCCCcCC
Confidence 9985 56889999999999999999998877 689999999999999999999999999999998 89999999999
Q ss_pred c-ccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhh
Q 042887 476 G-SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYL 554 (628)
Q Consensus 476 ~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 554 (628)
+ ..|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|..+
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence 7 47888999999999999999999999999999999999999999999988999999999999999999999 566669
Q ss_pred hccc-CCCeEeccCCcCcccCCC
Q 042887 555 ENLL-FLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 555 ~~l~-~L~~L~ls~N~l~~~~p~ 576 (628)
..++ +|++|++++|++.+..+.
T Consensus 541 ~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp GGSCTTCCEEECCSCCCCCSSTT
T ss_pred hhhcccCcEEEccCCCcccCCcc
Confidence 9987 599999999999987775
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.9e-48 Score=426.63 Aligned_cols=418 Identities=18% Similarity=0.235 Sum_probs=344.6
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCc------c---------------------------ccccccc-
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG------G---------------------------RIPDSLC- 207 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~---------------------------~~~~~~~- 207 (628)
.+++.|+|++|++.|.+|.+|+++++|++|+|++|.+. + .+|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57999999999999999999999999999999999762 1 1111111
Q ss_pred ------------------CCCCCCEeecc--cccCcccCCcCccCCCCCCEEEeecccCccc-----------------C
Q 042887 208 ------------------QLRSLNYLSIS--ENNFSCKLPLSIWNISSLEIISLHSNRFEGS-----------------L 250 (628)
Q Consensus 208 ------------------~l~~L~~L~Ls--~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~ 250 (628)
....++.+.+. +|++++ +|..++++++|++|+|++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11123333332 578887 899999999999999999999964 8
Q ss_pred Chhhh-hCCCCCcEEecccCcccccccccccCCCCCCEEEccccc-cee-ecccccccC------CCCCEEEccCCcCCC
Q 042887 251 PLNIG-FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH-FSG-QVKIDFNRL------SNLSRLFLSKNNLGT 321 (628)
Q Consensus 251 ~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l------~~L~~L~L~~n~l~~ 321 (628)
|..++ ..+++|++|++++|++.+.+|..|+++++|++|++++|+ +++ ..|..+..+ ++|++|++++|+++.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 88876 149999999999999999999999999999999999998 887 678777776 899999999999874
Q ss_pred cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCC-cCeeeeccccccc
Q 042887 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN-INAFGVEYNQLTG 400 (628)
Q Consensus 322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~ 400 (628)
++. ...+.++++|+.|++++|.+++..+ .+..+. +|+.|++++|.++ .+|..+..+++ |+.|++++|.+.
T Consensus 320 ip~-----~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 320 FPV-----ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp CCC-----HHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred cCc-----hhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 321 0157788899999999999987666 666665 8999999999999 77888999999 999999999998
Q ss_pred cCCcCCCCCC--CCCeEecccCccccccCcccc-------CCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCC
Q 042887 401 TIPHAIGELK--NLQGLALVRNSLRGTIPDTLG-------NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471 (628)
Q Consensus 401 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~ 471 (628)
.+|..+..++ +|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++| +.|++++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L----~~L~Ls~ 466 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL----SSINLMG 466 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCC----SEEECCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCC----CEEECCC
Confidence 6788777655 899999999999998888888 78899999999999995444445567888 8899999
Q ss_pred CcCccccchhhhcc-------CCCCEeeCcCCcCcccCCcccc--CCCCCCeEECcCceeeeecCccccCCCCCCEEEC-
Q 042887 472 NLLGGSIPLEVGNL-------RNLAEFDLSENHFSNEIPVTLS--ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL- 541 (628)
Q Consensus 472 N~l~~~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L- 541 (628)
|+++...+..+... ++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|++|+|
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 99994433334433 38999999999999 6777776 89999999999999996 8888999999999999
Q ss_pred -----CCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887 542 -----SRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG 597 (628)
Q Consensus 542 -----s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 597 (628)
++|++.+.+|..+..+++|++|++++|++ +.+|.. ..++++.+++++|+..|-.
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 56788889999999999999999999999 667754 3488999999999988743
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=405.74 Aligned_cols=417 Identities=19% Similarity=0.209 Sum_probs=313.8
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
++|++||+++|.+++..|+.|.++++|++|+|++|++++..|++|+++++|++|+|++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67888888888888888888888888888888888888887888888888888888888888 45555 7888888888
Q ss_pred ecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCC--CEEEcccccc--eeecccccccCC-CCCEEEcc
Q 042887 242 HSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNL--QVLDVYKNHF--SGQVKIDFNRLS-NLSRLFLS 315 (628)
Q Consensus 242 ~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~~~~~~~~~l~-~L~~L~L~ 315 (628)
++|.+++ .+|..+. .+++|++|++++|++++ ..+..+++| ++|++++|.+ .+..+..+..+. +...++++
T Consensus 98 ~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 8888874 3555555 48888888888888875 356677777 8888888888 555665555433 12233444
Q ss_pred CCcCCCcCCCC-------------------------ccccccccCCCCCceeecccCCcccccchHHHhc--cccccEEE
Q 042887 316 KNNLGTESTSD-------------------------LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL--SAKITVIG 368 (628)
Q Consensus 316 ~n~l~~~~~~~-------------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~ 368 (628)
+|.+.+..... ......+..+++|+.|++++|.+++..+..+... ..+++.|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 44332211000 0011234455666666666666554433332211 12677788
Q ss_pred ccCCcceeeCchhh-----hccCCcCeeeeccccccccCC-cCCCCC---CCCCeEecccCccccccCccccCCCCCCeE
Q 042887 369 MGDNQISGTIPSEI-----KNLVNINAFGVEYNQLTGTIP-HAIGEL---KNLQGLALVRNSLRGTIPDTLGNLTLLNRL 439 (628)
Q Consensus 369 l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 439 (628)
+++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 88887777777776 7777778888877777 233 333333 56888888888776322 12688999999
Q ss_pred ecCCcccccccCCcccCCcchhcccceEEcCCCcCcc--ccchhhhccCCCCEeeCcCCcCcccCCc-cccCCCCCCeEE
Q 042887 440 FLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGG--SIPLEVGNLRNLAEFDLSENHFSNEIPV-TLSACTTLEYLH 516 (628)
Q Consensus 440 ~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 516 (628)
++++|++++..|..+..+++| +.|++++|++++ ..|..+..+++|++|++++|++++.+|. .+..+++|++|+
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTEL----ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSC----CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred EeECCccChhhhhhhccCCCC----CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 999999998899999999988 899999999996 4567899999999999999999974554 588899999999
Q ss_pred CcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCCCCCc
Q 042887 517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGNERLC 595 (628)
Q Consensus 517 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c 595 (628)
+++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++..+. ...+++++.+++++|++.|
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 999999887777664 79999999999999 6777777999999999999999964443 4567889999999999998
Q ss_pred c
Q 042887 596 G 596 (628)
Q Consensus 596 ~ 596 (628)
.
T Consensus 483 ~ 483 (520)
T 2z7x_B 483 S 483 (520)
T ss_dssp C
T ss_pred c
Confidence 5
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-46 Score=406.82 Aligned_cols=402 Identities=19% Similarity=0.209 Sum_probs=338.2
Q ss_pred ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL 236 (628)
Q Consensus 157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L 236 (628)
.+.++++|++||+++|++++..|..|+++++|++|+|++|.+++..|.+|+++++|++|++++|.++...+..++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 35677888888888888888778888888888888888888887777888888888888888888886655678888888
Q ss_pred CEEEeecccCcc-cCChhhhhCCCCCcEEecccCcccccccccccCCCCC----CEEEcccccceeecccc---------
Q 042887 237 EIISLHSNRFEG-SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNL----QVLDVYKNHFSGQVKID--------- 302 (628)
Q Consensus 237 ~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~L~~N~i~~~~~~~--------- 302 (628)
++|++++|.+++ .+|..+. ++++|++|++++|++++..+..++.+++| +.|++++|.+++..+..
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 888888888874 3566665 48888888888888887777777777777 77788777766554433
Q ss_pred ------------------------------------------------------------------------cccCCCCC
Q 042887 303 ------------------------------------------------------------------------FNRLSNLS 310 (628)
Q Consensus 303 ------------------------------------------------------------------------~~~l~~L~ 310 (628)
|..+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 34456677
Q ss_pred EEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCe
Q 042887 311 RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINA 390 (628)
Q Consensus 311 ~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 390 (628)
+|++++|.++.+ +..+..+ +|+.|++++|.+...... .+ ++++.|++++|.+.+..+. ..+++|+.
T Consensus 286 ~L~l~~~~l~~l-------~~~~~~~-~L~~L~l~~n~~~~l~~~---~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~ 351 (570)
T 2z63_A 286 SFSLVSVTIERV-------KDFSYNF-GWQHLELVNCKFGQFPTL---KL-KSLKRLTFTSNKGGNAFSE--VDLPSLEF 351 (570)
T ss_dssp EEEEESCEECSC-------CBCCSCC-CCSEEEEESCBCSSCCBC---BC-SSCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred EEEecCccchhh-------hhhhccC-CccEEeeccCcccccCcc---cc-cccCEEeCcCCcccccccc--ccCCCCCE
Confidence 777777766543 2345566 899999999999855442 23 3899999999999877665 78999999
Q ss_pred eeeccccccccC--CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccC-CcccCCcchhcccceE
Q 042887 391 FGVEYNQLTGTI--PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-SSLGNCQNLMTLSRLL 467 (628)
Q Consensus 391 L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~l~~~L 467 (628)
|++++|++.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..+ ..+..+++| +.|
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L----~~L 426 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL----IYL 426 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC----CEE
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC----CEE
Confidence 999999998654 67788999999999999999965554 9999999999999999997766 567888888 899
Q ss_pred EcCCCcCccccchhhhccCCCCEeeCcCCcCc-ccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcc
Q 042887 468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS-NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546 (628)
Q Consensus 468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 546 (628)
++++|.+.+..|..+.++++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 99999999989999999999999999999998 57889999999999999999999998899999999999999999999
Q ss_pred cccCchhhhcccCCCeEeccCCcCcccCCCCC
Q 042887 547 SGQIPKYLENLLFLAYLNLSYNHFEGEVPRKG 578 (628)
Q Consensus 547 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~ 578 (628)
++.+++.|..+++|+.|++++|++++.+|...
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 99888899999999999999999999988653
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-46 Score=409.64 Aligned_cols=421 Identities=19% Similarity=0.196 Sum_probs=290.6
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCCC
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISSL 236 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~L 236 (628)
+.++++|++|++++|++++..|+.|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..|..+.++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 4566777777777777777777777777777777777777776666667777777777777777764 245667777777
Q ss_pred CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887 237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK 316 (628)
Q Consensus 237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 316 (628)
++|++++|.+.+.+|...+..+++|++|++++|++++..|..++++++|++|++++|.+.......+..+++|++|++++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 77777777744466654455577777777777777777777777777777777777776544443445677888888888
Q ss_pred CcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhc---cccccEEEccCCcceeeCc--------------
Q 042887 317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL---SAKITVIGMGDNQISGTIP-------------- 379 (628)
Q Consensus 317 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~-------------- 379 (628)
|++++...... .....+++|+.|++++|.+++..+..+... ..+++.+++++|.+.+...
T Consensus 206 n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 206 TNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp CBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred Ccccccccccc---chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 87766432211 122345678888888887776555544322 1367777777777654210
Q ss_pred ---------------------hhhhccCCcCeeeeccccccccCCcCC-CCCCCCCeEecccCccccccC---ccccCCC
Q 042887 380 ---------------------SEIKNLVNINAFGVEYNQLTGTIPHAI-GELKNLQGLALVRNSLRGTIP---DTLGNLT 434 (628)
Q Consensus 380 ---------------------~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~ 434 (628)
..+....+|+.+++++|++. .+|..+ ..+++|++|++++|++++..| ..+..++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~ 361 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc
Confidence 11122345667777777765 344444 467788888888888776553 2366777
Q ss_pred CCCeEecCCcccccccC--CcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCC
Q 042887 435 LLNRLFLGFNNLQGNVP--SSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTL 512 (628)
Q Consensus 435 ~L~~L~L~~N~l~~~~~--~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 512 (628)
+|++|++++|++++..+ ..+..+++| +.|++++|+++ .+|..+..+++|++|++++|++++ +|..+ .++|
T Consensus 362 ~L~~L~Ls~N~l~~~~~~~~~~~~l~~L----~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L 433 (549)
T 2z81_A 362 SLQTLVLSQNHLRSMQKTGEILLTLKNL----TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTL 433 (549)
T ss_dssp TCCEEECTTSCCCCHHHHHHHGGGCTTC----CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred cCcEEEccCCcccccccchhhhhcCCCC----CEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCc
Confidence 88888888888765432 346666666 77788888887 566677777888888888888763 33332 2578
Q ss_pred CeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCC
Q 042887 513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGN 591 (628)
Q Consensus 513 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n 591 (628)
++|++++|++++.. ..+++|++|+|++|+++ .+|+ ...+++|++|++++|++++.+|. ...+++++.+++++|
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCC
Confidence 88888888877532 47789999999999998 4555 46788999999999999987775 466788899999999
Q ss_pred CCCcc
Q 042887 592 ERLCG 596 (628)
Q Consensus 592 ~~~c~ 596 (628)
++.|.
T Consensus 508 ~~~~~ 512 (549)
T 2z81_A 508 PWDCS 512 (549)
T ss_dssp CBCCC
T ss_pred CccCC
Confidence 98885
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-46 Score=417.79 Aligned_cols=411 Identities=19% Similarity=0.249 Sum_probs=212.6
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEec-ccCcCcccccccc----------------------------------
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDI-SANMLGGRIPDSL---------------------------------- 206 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~---------------------------------- 206 (628)
.+++.|+|++|++.|.+|++|+++++|+.|+| ++|.+.+..|-.-
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8886654411100
Q ss_pred -----------------cCCCCCCEeeccc--ccCcccCCcCccCCCCCCEEEeecccCcc-----------------cC
Q 042887 207 -----------------CQLRSLNYLSISE--NNFSCKLPLSIWNISSLEIISLHSNRFEG-----------------SL 250 (628)
Q Consensus 207 -----------------~~l~~L~~L~Ls~--N~i~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------~~ 250 (628)
.....++.+.+.. |++++ +|..|+++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0111222222222 44544 45555555555555555555554 14
Q ss_pred Chhhh-hCCCCCcEEecccCcccccccccccCCCCCCEEEccccc-cee-ecccccccCC-------CCCEEEccCCcCC
Q 042887 251 PLNIG-FNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNH-FSG-QVKIDFNRLS-------NLSRLFLSKNNLG 320 (628)
Q Consensus 251 ~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l~ 320 (628)
|..+. ..+++|++|+|++|++.+.+|..|+++++|++|++++|+ +++ ..|..+..++ +|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 54442 235555555555555555555555555555555555554 544 3444333332 5555555555554
Q ss_pred CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCC-cCeeeecccccc
Q 042887 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN-INAFGVEYNQLT 399 (628)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~ 399 (628)
.++. ...+.++++|+.|++++|.++. .+ .+..+. +|+.|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus 562 ~ip~-----~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 562 EFPA-----SASLQKMVKLGLLDCVHNKVRH-LE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp BCCC-----HHHHTTCTTCCEEECTTSCCCB-CC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ccCC-----hhhhhcCCCCCEEECCCCCccc-ch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 2211 0134445555555555555542 22 333333 4555555555555 44555555555 555555555555
Q ss_pred ccCCcCCCCCCC--CCeEecccCccccccCccc---c--CCCCCCeEecCCcccccccCCcc-cCCcchhcccceEEcCC
Q 042887 400 GTIPHAIGELKN--LQGLALVRNSLRGTIPDTL---G--NLTLLNRLFLGFNNLQGNVPSSL-GNCQNLMTLSRLLDLSG 471 (628)
Q Consensus 400 ~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~l~~~L~Ls~ 471 (628)
.+|..+..++. |+.|++++|++.+.+|... . .+++|+.|++++|+++ .+|..+ ..+++| +.|+|++
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L----~~L~Ls~ 706 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI----STIILSN 706 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC----SEEECCS
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC----CEEECCC
Confidence 44444444432 5555555555554333211 1 2235555555555555 233222 244444 4555555
Q ss_pred CcCccccchh-hh-------ccCCCCEeeCcCCcCcccCCcccc--CCCCCCeEECcCceeeeecCccccCCCCCCEEEC
Q 042887 472 NLLGGSIPLE-VG-------NLRNLAEFDLSENHFSNEIPVTLS--ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL 541 (628)
Q Consensus 472 N~l~~~~~~~-~~-------~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 541 (628)
|+++ .+|.. +. ++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEEC
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEEC
Confidence 5555 22222 11 1125555555555555 3444444 55555555555555553 4555555555555555
Q ss_pred CC------CcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCC
Q 042887 542 SR------NNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNER 593 (628)
Q Consensus 542 s~------N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~ 593 (628)
++ |++.+.+|..|.++++|+.|++++|++ +.+|.. ..++++.+++++|+.
T Consensus 784 s~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp CCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred CCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence 44 445555555555555555555555555 444433 224555555555543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-45 Score=400.03 Aligned_cols=402 Identities=19% Similarity=0.245 Sum_probs=325.7
Q ss_pred ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCccc-ccccccCCCCCCEeeccccc-CcccCCcCccCCC
Q 042887 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGR-IPDSLCQLRSLNYLSISENN-FSCKLPLSIWNIS 234 (628)
Q Consensus 157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-i~~~~p~~~~~l~ 234 (628)
.+.++++|++||+++|.+++..|..|+++++|++|++++|.+++. .|..|+.+++|++|++++|. +....+..|.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 367889999999999999998888899999999999999999864 56789999999999999998 5544457899999
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeec---ccccccCCCCCE
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV---KIDFNRLSNLSR 311 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~l~~L~~ 311 (628)
+|++|++++|.+++.+|..+. .+++|++|++++|.+....+..+..+++|++|++++|++++.. ......+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 999999999999977777776 4999999999999998544444577999999999999998752 223345789999
Q ss_pred EEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccc------------------------------c----chHH
Q 042887 312 LFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV------------------------------F----LRSI 357 (628)
Q Consensus 312 L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~------------------------------~----~~~~ 357 (628)
|++++|.+++.... .....+..+++|+.+++++|.+.+. . ...+
T Consensus 228 L~l~~n~l~~~~~~--~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 228 LAFRGSVLTDESFN--ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp EEEESCEEEHHHHH--HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred eeccccccchhHHH--HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhh
Confidence 99999987642211 1112223334444444444443321 1 1111
Q ss_pred HhccccccEEEccCCcceeeCchhh-hccCCcCeeeeccccccccCC---cCCCCCCCCCeEecccCccccccC--cccc
Q 042887 358 ANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTGTIP---HAIGELKNLQGLALVRNSLRGTIP--DTLG 431 (628)
Q Consensus 358 ~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~~~ 431 (628)
.....+++.+++++|.+. .+|..+ ..+++|+.|++++|++.+..| ..++.+++|++|++++|++++..+ ..+.
T Consensus 306 ~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 384 (549)
T 2z81_A 306 YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384 (549)
T ss_dssp HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence 222348999999999998 455555 689999999999999987653 457889999999999999986543 5688
Q ss_pred CCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCC
Q 042887 432 NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTT 511 (628)
Q Consensus 432 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 511 (628)
.+++|++|++++|+++ .+|..+..+++| +.|++++|+++. +|..+ .++|++|++++|++++.. ..+++
T Consensus 385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L----~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~ 452 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH-PMPDSCQWPEKM----RFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPR 452 (549)
T ss_dssp GCTTCCEEECTTCCCC-CCCSCCCCCTTC----CEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTT
T ss_pred cCCCCCEEECCCCCCc-cCChhhcccccc----cEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCCh
Confidence 9999999999999999 678888888888 899999999984 44433 368999999999998643 57899
Q ss_pred CCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887 512 LEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 512 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 576 (628)
|++|++++|+++ .+|. ...+++|++|+|++|++++.+|+.+..+++|+.|++++|++++.+|.
T Consensus 453 L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 453 LQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 999999999998 6665 46799999999999999999999999999999999999999998774
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-45 Score=404.11 Aligned_cols=360 Identities=18% Similarity=0.252 Sum_probs=282.2
Q ss_pred cCcCcccccccccCCCCCCEeecccccCccc-----------------CCcCcc--CCCCCCEEEeecccCcccCChhhh
Q 042887 195 ANMLGGRIPDSLCQLRSLNYLSISENNFSCK-----------------LPLSIW--NISSLEIISLHSNRFEGSLPLNIG 255 (628)
Q Consensus 195 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~ 255 (628)
+|++++ +|.+|+++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 466776 677777777788888887777764 777777 777788888887777777776665
Q ss_pred hCCCCCcEEecccCc-ccc-cccccccCC------CCCCEEEcccccceeeccc--ccccCCCCCEEEccCCcCCCcCCC
Q 042887 256 FNIPNVNFLSVGQNN-FTG-SLPHSFSNA------SNLQVLDVYKNHFSGQVKI--DFNRLSNLSRLFLSKNNLGTESTS 325 (628)
Q Consensus 256 ~~l~~L~~L~L~~N~-l~~-~~~~~~~~l------~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~ 325 (628)
++++|++|++++|+ +++ .+|..++++ ++|++|++++|+++ ..|. .+..+++|++|++++|++++
T Consensus 271 -~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g---- 344 (636)
T 4eco_A 271 -ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG---- 344 (636)
T ss_dssp -TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE----
T ss_pred -cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc----
Confidence 47778888888777 776 677766665 77788888887777 4555 67777778888887777763
Q ss_pred CccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccC--CcCeeeeccccccccCC
Q 042887 326 DLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLV--NINAFGVEYNQLTGTIP 403 (628)
Q Consensus 326 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~ 403 (628)
..+ .+..+++|+.|++++|.++ ..+..+..+..+|+.|++++|.++ .+|..+..++ +|+.|++++|.+.+..|
T Consensus 345 --~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 345 --KLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp --ECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred --chh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 112 3455667777788877776 444556666523888888888888 6677776654 89999999999999888
Q ss_pred cCCC-------CCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCc-ccCCc----chhcccceEEcCC
Q 042887 404 HAIG-------ELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS-LGNCQ----NLMTLSRLLDLSG 471 (628)
Q Consensus 404 ~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~----~L~~l~~~L~Ls~ 471 (628)
..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.. +.... ++..+ +.|++++
T Consensus 420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~ 497 (636)
T 4eco_A 420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL-TSIDLRF 497 (636)
T ss_dssp CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-CEEECCS
T ss_pred hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-cEEECcC
Confidence 8888 7889999999999999655556677999999999999999 55544 33222 12222 8999999
Q ss_pred CcCccccchhhh--ccCCCCEeeCcCCcCcccCCccccCCCCCCeEEC------cCceeeeecCccccCCCCCCEEECCC
Q 042887 472 NLLGGSIPLEVG--NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHL------QGNSFSGSLPLSLKTLKSIKELDLSR 543 (628)
Q Consensus 472 N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~ 543 (628)
|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|+|++
T Consensus 498 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 498 NKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp SCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred CcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 9999 6777776 89999999999999997 8889999999999999 56888889999999999999999999
Q ss_pred CcccccCchhhhcccCCCeEeccCCcCccc
Q 042887 544 NNLSGQIPKYLENLLFLAYLNLSYNHFEGE 573 (628)
Q Consensus 544 N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 573 (628)
|+++ .+|..+. ++|+.||+++|++...
T Consensus 576 N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 576 NDIR-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence 9995 6777655 7999999999998753
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-45 Score=417.06 Aligned_cols=402 Identities=21% Similarity=0.235 Sum_probs=299.9
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCccccccc--ccCCCCCCEeecccccCcccCC-cCccCCC
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDS--LCQLRSLNYLSISENNFSCKLP-LSIWNIS 234 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~i~~~~p-~~~~~l~ 234 (628)
+.++++|++|+|++|.+++..|+.|+++++|++|+|++|.+++..|.. |+.+++|++|+|++|.+++..+ ..|++++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 345555555555555555555555555555555555555555433333 5555555555555555554333 3455555
Q ss_pred CCCEEEeecccCcccCChhhhhCC--CCCcEEecccCcccccccccccCCCC------CCEEEcccccceeeccccccc-
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNI--PNVNFLSVGQNNFTGSLPHSFSNASN------LQVLDVYKNHFSGQVKIDFNR- 305 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~------L~~L~L~~N~i~~~~~~~~~~- 305 (628)
+|++|++++|.+++..+..+.. + ++|+.|++++|.+.+..|..++.+.+ |++|++++|.+++..+..+..
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 5555555555555444443332 3 55555666666555555555554444 788888888776544433322
Q ss_pred -------------------------------------CCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCC
Q 042887 306 -------------------------------------LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNK 348 (628)
Q Consensus 306 -------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 348 (628)
.++|++|++++|.+....+ ..+..+++|+.|++++|.
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCC
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCc
Confidence 2679999999999876433 456778899999999999
Q ss_pred cccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccC-
Q 042887 349 FGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP- 427 (628)
Q Consensus 349 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 427 (628)
+++..+..+..+. +|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++...
T Consensus 302 i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~ 380 (844)
T 3j0a_A 302 INKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFI 380 (844)
T ss_dssp CCEECTTTTTTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSC
T ss_pred CCCCChHHhcCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCC
Confidence 9999888888877 89999999999999989999999999999999999998888889999999999999998874211
Q ss_pred ---------------------------------------ccccCCCCCCeEecCCcccccccCC-cccCCcchhcccceE
Q 042887 428 ---------------------------------------DTLGNLTLLNRLFLGFNNLQGNVPS-SLGNCQNLMTLSRLL 467 (628)
Q Consensus 428 ---------------------------------------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~L 467 (628)
..+..+++|+.|++++|++++..+. .+..+++| +.|
T Consensus 381 ~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L----~~L 456 (844)
T 3j0a_A 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL----EQL 456 (844)
T ss_dssp CSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC----CBC
T ss_pred CCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc----ccc
Confidence 1134678999999999999865443 35556677 889
Q ss_pred EcCCCcCc-----cccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECC
Q 042887 468 DLSGNLLG-----GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLS 542 (628)
Q Consensus 468 ~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 542 (628)
++++|.++ +..+..|.++++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..+. ++|+.|+|+
T Consensus 457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls 534 (844)
T 3j0a_A 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDIS 534 (844)
T ss_dssp EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEE
T ss_pred cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECC
Confidence 99999997 34456788999999999999999999999999999999999999999977776665 899999999
Q ss_pred CCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887 543 RNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 543 ~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 576 (628)
+|++++..|+.| .+|+.|++++|++.+..+.
T Consensus 535 ~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 535 RNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred CCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 999999888775 4789999999999987764
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-44 Score=395.71 Aligned_cols=426 Identities=19% Similarity=0.166 Sum_probs=329.1
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
..+++|||++|+|++..+.+|.++++|++|||++|+|+++.+++|.++++|++|+|++|++++..+.+|.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36899999999999988899999999999999999999888999999999999999999999877788999999999999
Q ss_pred ecccCcccCChhhhhCCCCCcEEecccCccccc-ccccccCCCCCCEEEcccccceeecccccccCCCCC----EEEccC
Q 042887 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLS----RLFLSK 316 (628)
Q Consensus 242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~----~L~L~~ 316 (628)
++|+++ .+|...+.++++|++|++++|+++.. .|..++.+++|++|++++|++++..+..|..+.+++ .++++.
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999998 67777667799999999999999864 578889999999999999999999888887665543 677888
Q ss_pred CcCCCcCCCCccccc------------------cccCCC-----------------------------------------
Q 042887 317 NNLGTESTSDLDFLT------------------LLTNCS----------------------------------------- 337 (628)
Q Consensus 317 n~l~~~~~~~~~~~~------------------~l~~~~----------------------------------------- 337 (628)
|.+..+....+.... .+..+.
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 877655443221100 001111
Q ss_pred ----------------CCceeecccCCcccccchHHHhccccccEEEccCCcceeeCch-------------------hh
Q 042887 338 ----------------QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS-------------------EI 382 (628)
Q Consensus 338 ----------------~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------------------~l 382 (628)
+++.+.+..+.+.... .+... ..++.|++.+|.+.+..+. ..
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~-~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYN-FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSC-CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hcccccchhhhhhhhccccccccccccccccc--ccccc-hhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 2222222222221111 11111 2566777777766543222 12
Q ss_pred hccCCcCeeeeccccccc--cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccC-CcccCCcc
Q 042887 383 KNLVNINAFGVEYNQLTG--TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVP-SSLGNCQN 459 (628)
Q Consensus 383 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 459 (628)
..+++|+.+++++|.+.. ..+..+..+.+|+.++++.|.+.. .+..+..+++|+.++++.|......+ ..+..+.+
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccc
Confidence 345566666666666542 233444556666777776666653 44567778888888888777654443 34566666
Q ss_pred hhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCc-ccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCE
Q 042887 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS-NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKE 538 (628)
Q Consensus 460 L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 538 (628)
+ +.+++++|.+.+..+..+..++.|++|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++
T Consensus 447 l----~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 447 L----IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp C----CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred c----ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 6 88999999999888999999999999999999854 457888999999999999999999999999999999999
Q ss_pred EECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC-CCC-CCCCcccccCCCCCcc
Q 042887 539 LDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-GVF-GNRTGIHLIGNERLCG 596 (628)
Q Consensus 539 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~-~~l~~~~~~~n~~~c~ 596 (628)
|+|++|+|++..|..|.++++|++||+++|+|++..|.. ..+ .+++.+++++||+.|.
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999999999999988754 233 6799999999999995
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.5e-45 Score=405.14 Aligned_cols=409 Identities=18% Similarity=0.229 Sum_probs=332.3
Q ss_pred CCCCEEecccCcCcccccccccCCCCCCEeec-ccccCcccCCcCc----------------------------------
Q 042887 186 SALEAIDISANMLGGRIPDSLCQLRSLNYLSI-SENNFSCKLPLSI---------------------------------- 230 (628)
Q Consensus 186 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~N~i~~~~p~~~---------------------------------- 230 (628)
..++.|+|++|.+.+.+|.+|++|++|++|+| ++|.+.+..|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8898766533210
Q ss_pred -----------------cCCCCCCEEEeec--ccCcccCChhhhhCCCCCcEEecccCcccc-----------------c
Q 042887 231 -----------------WNISSLEIISLHS--NRFEGSLPLNIGFNIPNVNFLSVGQNNFTG-----------------S 274 (628)
Q Consensus 231 -----------------~~l~~L~~L~L~~--n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-----------------~ 274 (628)
.....++.+.+.. |.+++ +|..+. ++++|++|+|++|++++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1122344444443 88886 898876 49999999999999998 3
Q ss_pred cccccc--CCCCCCEEEcccccceeecccccccCCCCCEEEccCCc-CCC-cCCCCccccc-cccCCCCCceeecccCCc
Q 042887 275 LPHSFS--NASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN-LGT-ESTSDLDFLT-LLTNCSQMEMLYLNTNKF 349 (628)
Q Consensus 275 ~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~~-~l~~~~~L~~L~l~~n~~ 349 (628)
+|..++ ++++|++|+|++|++.+..|..|..+++|++|++++|+ +++ .-+..+..+. .+..+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 888877 99999999999999999999999999999999999998 764 1111112121 455667999999999999
Q ss_pred ccccch--HHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCC-CCeEecccCcccccc
Q 042887 350 GGVFLR--SIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKN-LQGLALVRNSLRGTI 426 (628)
Q Consensus 350 ~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~ 426 (628)
+ ..+. .+..+. +|+.|++++|.++ .+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.++ .+
T Consensus 561 ~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp C-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred C-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 9 4555 788777 8999999999999 777 8999999999999999999 78888999999 999999999999 67
Q ss_pred CccccCCCC--CCeEecCCcccccccCCcccC-----CcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCc
Q 042887 427 PDTLGNLTL--LNRLFLGFNNLQGNVPSSLGN-----CQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFS 499 (628)
Q Consensus 427 ~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~-----l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 499 (628)
|..+..++. |+.|++++|++++..|..... +++| +.|++++|+++...+..+..+++|+.|+|++|+++
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L----~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA----STVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE----EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc----CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 888877654 999999999999876643322 2355 89999999999544444568999999999999999
Q ss_pred ccCCccccC-C-------CCCCeEECcCceeeeecCcccc--CCCCCCEEECCCCcccccCchhhhcccCCCeEeccC--
Q 042887 500 NEIPVTLSA-C-------TTLEYLHLQGNSFSGSLPLSLK--TLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSY-- 567 (628)
Q Consensus 500 ~~~~~~~~~-l-------~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~-- 567 (628)
.+|..+.. . ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++
T Consensus 711 -~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp -CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred -ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 45544333 2 39999999999999 7888887 99999999999999997 788899999999999976
Q ss_pred ----CcCcccCCC-CCCCCCCCcccccCCCC------CcccCCCCCCCCCCCC
Q 042887 568 ----NHFEGEVPR-KGVFGNRTGIHLIGNER------LCGGLEELHLPSCHFG 609 (628)
Q Consensus 568 ----N~l~~~~p~-~~~~~~l~~~~~~~n~~------~c~~~~~l~l~~c~~~ 609 (628)
|++.+.+|. ...+++++.+++++|.. ++..++.|++++|++.
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTC
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCC
Confidence 788888874 45688999999999864 2234555677777754
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-45 Score=393.00 Aligned_cols=396 Identities=20% Similarity=0.259 Sum_probs=329.9
Q ss_pred ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCC
Q 042887 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISS 235 (628)
Q Consensus 157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~ 235 (628)
.+.++++|++|++++|++++..|+.|+++++|++|+|++|+++ .+|.. .+++|++|+|++|.+++ ..|..|+++++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 4678899999999999999999999999999999999999999 45555 89999999999999987 46899999999
Q ss_pred CCEEEeecccCcccCChhhhhCCCCC--cEEecccCcc--cccccccccC--------------------------CCCC
Q 042887 236 LEIISLHSNRFEGSLPLNIGFNIPNV--NFLSVGQNNF--TGSLPHSFSN--------------------------ASNL 285 (628)
Q Consensus 236 L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~--------------------------l~~L 285 (628)
|++|++++|.+++ ..+..+++| +.|++++|.+ .+..|..+.. +++|
T Consensus 117 L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 117 LKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp CCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred ceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 9999999999984 223458888 9999999999 6666666655 6677
Q ss_pred CEEEccccc-------ceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHH-
Q 042887 286 QVLDVYKNH-------FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI- 357 (628)
Q Consensus 286 ~~L~L~~N~-------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~- 357 (628)
+.|++++|. +.+..+ .+..+++|+.|++++|.+++..... .... ...++|+.|++++|.+++..+..+
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~--~~~~-~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIR--ILQL-VWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHH--HHHH-HHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHH--HHHH-hhhCcccEEEeecccccCccccchh
Confidence 777887776 555544 6778888888888888775421110 1111 124589999999999987777766
Q ss_pred ----HhccccccEEEccCCcceeeCc-hhhhcc---CCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCcc
Q 042887 358 ----ANLSAKITVIGMGDNQISGTIP-SEIKNL---VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDT 429 (628)
Q Consensus 358 ----~~~~~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 429 (628)
..+. +++.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++..|..
T Consensus 269 ~~~~~~l~-~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~ 343 (520)
T 2z7x_B 269 DYSGTSLK-ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFEN 343 (520)
T ss_dssp CCCSCCCC-EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred hcccccCc-eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhh
Confidence 5555 899999999999 445 556555 78999999999987432 2368899999999999999889999
Q ss_pred ccCCCCCCeEecCCccccc--ccCCcccCCcchhcccceEEcCCCcCccccch-hhhccCCCCEeeCcCCcCcccCCccc
Q 042887 430 LGNLTLLNRLFLGFNNLQG--NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLRNLAEFDLSENHFSNEIPVTL 506 (628)
Q Consensus 430 ~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 506 (628)
+..+++|++|++++|++++ ..|..+..+++| +.|++++|++++.+|. .+..+++|++|++++|++++..|..+
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L----~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSL----QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC----CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCC----CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 9999999999999999986 456778888888 8999999999984555 48889999999999999988777666
Q ss_pred cCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887 507 SACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 507 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 575 (628)
. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..|..+++|++|++++|++++..+
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 4 79999999999999 788888899999999999999996555559999999999999999998765
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-44 Score=392.26 Aligned_cols=411 Identities=18% Similarity=0.193 Sum_probs=259.6
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
+++++||+++|.+++..|+.|.++++|++|+|++|.+++..|++|.++++|++|+|++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 46677777777777666667777777777777777777666667777777777777777776 34444 6677777777
Q ss_pred ecccCcccCC--hhhhhCCCCCcEEecccCcccccccccccCCCCC--CEEEcccccc--eeecccccccCC-CCCEEEc
Q 042887 242 HSNRFEGSLP--LNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNL--QVLDVYKNHF--SGQVKIDFNRLS-NLSRLFL 314 (628)
Q Consensus 242 ~~n~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~~~~~~~~~l~-~L~~L~L 314 (628)
++|.++ .+| ..+ .++++|++|++++|+++.. .+..+++| ++|++++|++ ++..+..|..+. ..-.+++
T Consensus 129 s~N~l~-~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 129 SFNDFD-VLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp CSSCCS-BCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCCcc-ccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 777776 333 333 3477777777777776642 34444444 7777777766 555555554432 0112233
Q ss_pred cCCcCCCcCCCCccccccccCCCCCceeecccC----------------------------CcccccchHHHhc--cccc
Q 042887 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTN----------------------------KFGGVFLRSIANL--SAKI 364 (628)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n----------------------------~~~~~~~~~~~~~--~~~L 364 (628)
+.|.+..... ...+..+++|+.+++++| .+.+.....+... ..++
T Consensus 204 ~~n~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 204 HPNSLFSVQV-----NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp CSSSCCCCCC-----EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred cCccchhhhh-----hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 3333322100 011223344444554444 3333222111110 1267
Q ss_pred cEEEccCCcceeeCchhh-----hccCCcCeeeeccccccccCC-cCCCC---CCCCCeEecccCccccccCccccCCCC
Q 042887 365 TVIGMGDNQISGTIPSEI-----KNLVNINAFGVEYNQLTGTIP-HAIGE---LKNLQGLALVRNSLRGTIPDTLGNLTL 435 (628)
Q Consensus 365 ~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~ 435 (628)
+.|++++|.+.+.+|..+ .+++.|+.+++..+.+ .+| ..+.. ..+|++|++++|.+.... ....+++
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~ 354 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSS 354 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCC
Confidence 777777777776666655 5555555555555544 122 11111 145777777777765322 1256788
Q ss_pred CCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc--cchhhhccCCCCEeeCcCCcCcccCC-ccccCCCCC
Q 042887 436 LNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS--IPLEVGNLRNLAEFDLSENHFSNEIP-VTLSACTTL 512 (628)
Q Consensus 436 L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 512 (628)
|++|++++|++++..|..+.++++| +.|++++|++++. .|..+.++++|++|++++|++++.+| ..+..+++|
T Consensus 355 L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQGCSTLKRL----QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCEEECCSSCCCTTTTTTCCSCSSC----CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred ceEEECCCCccccchhhhhcccCCC----CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 8888888888887778888888877 7888888888863 34567888888888888888887344 457778888
Q ss_pred CeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCC
Q 042887 513 EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGN 591 (628)
Q Consensus 513 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n 591 (628)
++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++.++. ...+++++.+++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 8888888888766665543 68888888888888 4555555888888888888888854443 456677888888888
Q ss_pred CCCcc
Q 042887 592 ERLCG 596 (628)
Q Consensus 592 ~~~c~ 596 (628)
|+.|.
T Consensus 508 ~~~c~ 512 (562)
T 3a79_B 508 PWDCT 512 (562)
T ss_dssp CBCCC
T ss_pred CcCCC
Confidence 88874
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-43 Score=373.16 Aligned_cols=385 Identities=18% Similarity=0.193 Sum_probs=309.2
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcc-cCCcCccCCCCCCEEEeec
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC-KLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~-~~p~~~~~l~~L~~L~L~~ 243 (628)
+.++.+++.++. +|. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+ ..+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~-lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQ-VPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSS-CCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCccc-CCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 568888888874 554 3 3799999999999998889999999999999999999874 4477899999999999999
Q ss_pred ccCcccCChhhhhCCCCCcEEecccCccccccccc--ccCCCCCCEEEcccccceeecccc-cccCCCCCEEEccCCcCC
Q 042887 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHS--FSNASNLQVLDVYKNHFSGQVKID-FNRLSNLSRLFLSKNNLG 320 (628)
Q Consensus 244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~n~l~ 320 (628)
|.+++..|..+. .+++|++|++++|++++..+.. |+++++|++|++++|++++..+.. |..+++|++|++++|.++
T Consensus 89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 999855565554 6999999999999999755554 999999999999999999887766 889999999999999998
Q ss_pred CcCCCCccccccccCCCCCceeecccCCcccccchHHH--------hccccccEEEccCCcceeeCchhhhcc---CCcC
Q 042887 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA--------NLSAKITVIGMGDNQISGTIPSEIKNL---VNIN 389 (628)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~l~~l---~~L~ 389 (628)
...+..+... ...+++.|++++|.+.+.....+. .. .+++.|++++|.+.+..|..+... ++|+
T Consensus 168 ~~~~~~l~~l----~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 168 SICEEDLLNF----QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp CCCTTTSGGG----TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred ccChhhhhcc----ccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccccchhhhhcccccccee
Confidence 7655433221 125788888888888765543322 11 257777777777776666655444 6666
Q ss_pred eeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccC--CCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887 390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGN--LTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL 467 (628)
Q Consensus 390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L 467 (628)
.+++++|.+.+.. +..+.+.+..+..+.. .++|+.|++++|++++..|..+..+++| +.|
T Consensus 243 ~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L 304 (455)
T 3v47_A 243 SLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL----EQL 304 (455)
T ss_dssp EEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC----CEE
T ss_pred eEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC----CEE
Confidence 7777666554321 1111222222222222 3689999999999998888889988888 889
Q ss_pred EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
++++|++.+..|..|.++++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 305 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 99999999888889999999999999999999888889999999999999999999888999999999999999999999
Q ss_pred ccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887 548 GQIPKYLENLLFLAYLNLSYNHFEGEVPRK 577 (628)
Q Consensus 548 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~ 577 (628)
+..++.|..+++|++|++++|++++.+|..
T Consensus 385 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 877788899999999999999999998854
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-42 Score=367.80 Aligned_cols=372 Identities=18% Similarity=0.188 Sum_probs=320.6
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcc-cccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGG-RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS 240 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~ 240 (628)
++|++|||++|.+++..|..|+++++|++|++++|.+.+ +.+..|.++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 579999999999999999999999999999999999974 4477899999999999999999988899999999999999
Q ss_pred eecccCcccCChh-hhhCCCCCcEEecccCccccccccc-ccCCCCCCEEEcccccceeecccccccC--CCCCEEEccC
Q 042887 241 LHSNRFEGSLPLN-IGFNIPNVNFLSVGQNNFTGSLPHS-FSNASNLQVLDVYKNHFSGQVKIDFNRL--SNLSRLFLSK 316 (628)
Q Consensus 241 L~~n~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~L~~ 316 (628)
+++|.+++.+|.. .+..+++|++|++++|++++..|.. +.++++|++|++++|++++..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998644443 3456999999999999999887876 8999999999999999999988888876 7899999999
Q ss_pred CcCCCcCCCCcc--ccccccCCCCCceeecccCCcccccchHHHhcc--ccccEEEccCCcceeeCchhhhccCCcCeee
Q 042887 317 NNLGTESTSDLD--FLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLS--AKITVIGMGDNQISGTIPSEIKNLVNINAFG 392 (628)
Q Consensus 317 n~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 392 (628)
|.+.......+. ....+..+++|+.|++++|.+++..+..+.... .+++.+++++|.+.+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------- 255 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-------------- 255 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence 999886654322 122344668999999999999988888776652 48999999999865431
Q ss_pred eccccccccCCcCCCC--CCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcC
Q 042887 393 VEYNQLTGTIPHAIGE--LKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLS 470 (628)
Q Consensus 393 l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls 470 (628)
+..+.+.+..+..+.. .++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++| +.|+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~Ls 331 (455)
T 3v47_A 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL----LKLNLS 331 (455)
T ss_dssp TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----CEEECC
T ss_pred cchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----CEEECC
Confidence 1222222222233333 3689999999999999999999999999999999999998889999999998 899999
Q ss_pred CCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccC
Q 042887 471 GNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI 550 (628)
Q Consensus 471 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 550 (628)
+|++++..+..+.++++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 99999888899999999999999999999888999999999999999999999877778899999999999999999877
Q ss_pred c
Q 042887 551 P 551 (628)
Q Consensus 551 ~ 551 (628)
|
T Consensus 412 ~ 412 (455)
T 3v47_A 412 P 412 (455)
T ss_dssp T
T ss_pred C
Confidence 6
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.6e-42 Score=373.37 Aligned_cols=398 Identities=18% Similarity=0.207 Sum_probs=307.9
Q ss_pred cccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCccc-CCcCccCCC
Q 042887 156 IQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCK-LPLSIWNIS 234 (628)
Q Consensus 156 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~p~~~~~l~ 234 (628)
..+.++++|++|++++|++++..|+.|.++++|++|||++|.++ .+|.. .+++|++|+|++|.+++. .|..|++++
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccC
Confidence 35678999999999999999999999999999999999999999 45555 899999999999999863 468999999
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCC--cEEecccCcc--cccccccccCCC--CCCEEEcccccceeecc-cccccCC
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNV--NFLSVGQNNF--TGSLPHSFSNAS--NLQVLDVYKNHFSGQVK-IDFNRLS 307 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~l~--~L~~L~L~~N~i~~~~~-~~~~~l~ 307 (628)
+|++|++++|.+++ .. +..+++| +.|++++|.+ ++..|..+..+. .+ .+++++|.+.+..+ ..+..++
T Consensus 147 ~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 147 KLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp TCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEE
T ss_pred cccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccc
Confidence 99999999999984 22 2235666 9999999999 777787777654 22 34555555543222 2233445
Q ss_pred CCCEEEccCC----------------------------cCCCcCCCCccccccccCCCCCceeecccCCcccccchHH--
Q 042887 308 NLSRLFLSKN----------------------------NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSI-- 357 (628)
Q Consensus 308 ~L~~L~L~~n----------------------------~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-- 357 (628)
+|+.|++++| .+...... ........++|++|++++|.+++..+..+
T Consensus 222 ~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV---KLFQFFWPRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH---HHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH---HHHHhhhcccccEEEEeccEeeccccchhhh
Confidence 5555555554 33221000 00011123489999999999987666655
Q ss_pred ---HhccccccEEEccCCcceeeCc-hhhhcc---CCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccc
Q 042887 358 ---ANLSAKITVIGMGDNQISGTIP-SEIKNL---VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTL 430 (628)
Q Consensus 358 ---~~~~~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 430 (628)
..+. .+..+++..+.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|++++..|..+
T Consensus 299 ~~~~~L~-~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 299 YSETALK-SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp CCSCSCC-EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred cccccch-heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh
Confidence 3333 566666666666 334 333333 67999999999986332 23788999999999999998899999
Q ss_pred cCCCCCCeEecCCcccccc--cCCcccCCcchhcccceEEcCCCcCccccc-hhhhccCCCCEeeCcCCcCcccCCcccc
Q 042887 431 GNLTLLNRLFLGFNNLQGN--VPSSLGNCQNLMTLSRLLDLSGNLLGGSIP-LEVGNLRNLAEFDLSENHFSNEIPVTLS 507 (628)
Q Consensus 431 ~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 507 (628)
..+++|++|++++|++++. .|..+.++++| +.|++++|++++.+| ..+..+++|++|++++|++++..|..+.
T Consensus 374 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L----~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSL----ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC----CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred cccCCCCEEECCCCCcCCcccchhhhcCCCCC----CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence 9999999999999999863 34668888888 899999999998444 4588999999999999999877666554
Q ss_pred CCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887 508 ACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 508 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 576 (628)
++|++|++++|+++ .+|..+..+++|++|+|++|+++..++..+..+++|+.|++++|++.+..|.
T Consensus 450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 79999999999999 6777777999999999999999955444599999999999999999987663
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-40 Score=366.21 Aligned_cols=411 Identities=19% Similarity=0.233 Sum_probs=332.7
Q ss_pred ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL 236 (628)
Q Consensus 157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L 236 (628)
.+.++++|++|||++|+|+++.|++|.++++|++|+|++|++++..+.+|.++++|++|+|++|++++..+..|+++++|
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 46788999999999999999889999999999999999999998888899999999999999999998777889999999
Q ss_pred CEEEeecccCccc-CChhhhhCCCCCcEEecccCcccccccccccCCCCCC----EEEcccccceeecccccccCCCCCE
Q 042887 237 EIISLHSNRFEGS-LPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQ----VLDVYKNHFSGQVKIDFNRLSNLSR 311 (628)
Q Consensus 237 ~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~~~~l~~L~~ 311 (628)
++|++++|.+++. +|..+ ..+++|++|++++|++++..+..|..+.+++ .++++.|.++.+.+..+.. ..++.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~ 228 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHK 228 (635)
T ss_dssp CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred CeeccccCccccCCCchhh-ccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhh
Confidence 9999999999743 34444 4599999999999999988888887665543 6778888877655543322 22333
Q ss_pred EEccCCcCC-------------------------------CcCCCC---------------------------c------
Q 042887 312 LFLSKNNLG-------------------------------TESTSD---------------------------L------ 327 (628)
Q Consensus 312 L~L~~n~l~-------------------------------~~~~~~---------------------------~------ 327 (628)
+++.+|... ...... +
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 333332111 000000 0
Q ss_pred ----------cccccccCCCCCceeecccCCcccccchHHH-------------------hccccccEEEccCCccee--
Q 042887 328 ----------DFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA-------------------NLSAKITVIGMGDNQISG-- 376 (628)
Q Consensus 328 ----------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-------------------~~~~~L~~L~l~~n~l~~-- 376 (628)
.....+.....++.|++.+|.+.......+. .+ ++++.+++++|.+..
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l-~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC-TTCCEEECCSSCCBEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc-cccccchhhcccccccc
Confidence 0011233445677777777765543322111 22 378999999998863
Q ss_pred eCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccC-ccccCCCCCCeEecCCcccccccCCccc
Q 042887 377 TIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQGNVPSSLG 455 (628)
Q Consensus 377 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 455 (628)
..+..+..+.+|+.+++..|.+.. .+..+..+++|+.+++++|......+ ..|..+++++.++++.|.+.+..+..+.
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 456778889999999999999874 56678899999999999988775544 5678899999999999999999999999
Q ss_pred CCcchhcccceEEcCCCcCc-cccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCC
Q 042887 456 NCQNLMTLSRLLDLSGNLLG-GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK 534 (628)
Q Consensus 456 ~l~~L~~l~~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 534 (628)
.++.+ +.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.+++
T Consensus 467 ~~~~L----~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 467 GLSSL----EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TCTTC----CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred cchhh----hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 99888 89999999854 45788899999999999999999999999999999999999999999988889999999
Q ss_pred CCCEEECCCCcccccCchhhhcc-cCCCeEeccCCcCcccCC
Q 042887 535 SIKELDLSRNNLSGQIPKYLENL-LFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 535 ~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p 575 (628)
+|++|||++|+|++..|+.+..+ ++|++|++++|++.+...
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999999998 689999999999998765
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.3e-39 Score=338.93 Aligned_cols=347 Identities=26% Similarity=0.355 Sum_probs=224.7
Q ss_pred CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI 238 (628)
Q Consensus 159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~ 238 (628)
..+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 356789999999999875 45 38889999999999999986654 9999999999999999986544 999999999
Q ss_pred EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887 239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN 318 (628)
Q Consensus 239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~ 318 (628)
|++++|.++ .++. +..+++|++|++++|.+++. + .+.++++|++|+++ |.+.+.. .+..+++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 999999998 5554 44699999999999998854 3 58899999999996 4555443 38889999999999998
Q ss_pred CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccc
Q 042887 319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398 (628)
Q Consensus 319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 398 (628)
++.+ ..+..+++|+.|++++|.+.+..+ +..+. +|+.|++++|.+.+. ..+.
T Consensus 189 l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~--------------- 240 (466)
T 1o6v_A 189 VSDI--------SVLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLA--------------- 240 (466)
T ss_dssp CCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGG---------------
T ss_pred CCCC--------hhhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhh---------------
Confidence 8653 235666777777777777665433 22222 455555555554432 2344
Q ss_pred cccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCcccc
Q 042887 399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI 478 (628)
Q Consensus 399 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~ 478 (628)
.+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++| +.|++++|++.+..
T Consensus 241 ---------~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L----~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 241 ---------SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL----TNLELNENQLEDIS 303 (466)
T ss_dssp ---------GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC----SEEECCSSCCSCCG
T ss_pred ---------cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc----CeEEcCCCcccCch
Confidence 44455555555555443322 4445555555555555543222 4444444 45555555555332
Q ss_pred chhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887 479 PLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558 (628)
Q Consensus 479 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 558 (628)
+ +..+++|++|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..++
T Consensus 304 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 375 (466)
T 1o6v_A 304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT 375 (466)
T ss_dssp G--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred h--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence 2 4455555555555555554333 44555555555555555532 245555555555555555554444 55555
Q ss_pred CCCeEeccCCcCcc
Q 042887 559 FLAYLNLSYNHFEG 572 (628)
Q Consensus 559 ~L~~L~ls~N~l~~ 572 (628)
+|+.|++++|++++
T Consensus 376 ~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 376 RITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCCEEEEC
T ss_pred CCCEEeccCCcccC
Confidence 55555555555554
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.5e-39 Score=338.85 Aligned_cols=346 Identities=25% Similarity=0.353 Sum_probs=287.9
Q ss_pred CCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcE
Q 042887 184 NFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF 263 (628)
Q Consensus 184 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 263 (628)
.+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence 46789999999999984 44 48889999999999999986544 999999999999999998 4554 446999999
Q ss_pred EecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceee
Q 042887 264 LSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLY 343 (628)
Q Consensus 264 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 343 (628)
|++++|++++..+ +.++++|++|++++|.+++.. .+..+++|++|+++ |.+.. ...+.++++|+.|+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~--------~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTD--------LKPLANLTTLERLD 183 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCC--------CGGGTTCTTCCEEE
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccC--------chhhccCCCCCEEE
Confidence 9999999996543 899999999999999998643 48889999999986 33332 12256667777777
Q ss_pred cccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccc
Q 042887 344 LNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR 423 (628)
Q Consensus 344 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 423 (628)
+++|.+.+. ..+..+++|+.|++++|.+.+..| ++.+++|++|++++|.++
T Consensus 184 l~~n~l~~~---------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 184 ISSNKVSDI---------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp CCSSCCCCC---------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CcCCcCCCC---------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 777665432 236778888999999998886554 677899999999999998
Q ss_pred cccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCC
Q 042887 424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP 503 (628)
Q Consensus 424 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 503 (628)
+. ..+..+++|+.|++++|++++..+ +..+++| +.|++++|.+++..+ +..+++|++|++++|++++..+
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L----~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 304 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKL----TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC----SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCC----CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh
Confidence 53 468899999999999999986655 7788888 899999999996544 8899999999999999996544
Q ss_pred ccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCC
Q 042887 504 VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNR 583 (628)
Q Consensus 504 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l 583 (628)
+..+++|+.|++++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++.+| ...++++
T Consensus 305 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 377 (466)
T 1o6v_A 305 --ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRI 377 (466)
T ss_dssp --GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred --hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCC
Confidence 7899999999999999997665 78999999999999999965 478999999999999999999888 6678899
Q ss_pred CcccccCCCCCc
Q 042887 584 TGIHLIGNERLC 595 (628)
Q Consensus 584 ~~~~~~~n~~~c 595 (628)
+.+++.+|++..
T Consensus 378 ~~L~l~~n~~~~ 389 (466)
T 1o6v_A 378 TQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCCEEEEC
T ss_pred CEEeccCCcccC
Confidence 999999987654
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=345.65 Aligned_cols=346 Identities=21% Similarity=0.212 Sum_probs=247.5
Q ss_pred CEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccc
Q 042887 213 NYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYK 292 (628)
Q Consensus 213 ~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 292 (628)
+.++.+++.++ .+|..+. +++++|+|++|.++ .++...+..+++|++|+|++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666665 3454432 45666666666666 33333333466666666666666665566666666666666666
Q ss_pred ccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCC
Q 042887 293 NHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDN 372 (628)
Q Consensus 293 N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 372 (628)
|+++.+.+..|..+++|++|++++|.+.. ..+..+..+. +|+.|++++|
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------------------------------~~~~~~~~l~-~L~~L~l~~n 138 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVI------------------------------LLDYMFQDLY-NLKSLEVGDN 138 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCE------------------------------ECTTTTTTCT-TCCEEEECCT
T ss_pred CcCCccCcccccCCCCCCEEECCCCcccc------------------------------CChhHccccc-cCCEEECCCC
Confidence 66665555556666666666666666554 3333333333 5555566666
Q ss_pred cceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCC
Q 042887 373 QISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS 452 (628)
Q Consensus 373 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 452 (628)
.+.+..+..|.++++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..|.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 66666667777888888888888888766666778888888888888888877777788888888888888777666766
Q ss_pred cccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccC
Q 042887 453 SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT 532 (628)
Q Consensus 453 ~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 532 (628)
......+| +.|++++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..|..
T Consensus 219 ~~~~~~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 219 NCLYGLNL----TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp TTTTTCCC----SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred ccccCccc----cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 66665666 78888888888655567888899999999999988877888888899999999999998888888888
Q ss_pred CCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887 533 LKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG 597 (628)
Q Consensus 533 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 597 (628)
+++|+.|+|++|++++..+..|..+++|++|++++|++.+..+....+.......+.++...|..
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 99999999999999887777888888999999999998876654433334444566677777754
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=341.19 Aligned_cols=351 Identities=21% Similarity=0.248 Sum_probs=258.5
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n 244 (628)
+.++.++++++ .+|..+ .++++.|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46778888877 455544 358889999999998888888999999999999999998888888999999999999999
Q ss_pred cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCC
Q 042887 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTEST 324 (628)
Q Consensus 245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 324 (628)
.++ .+|...+..+++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+++.++.
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 988 6777766678888999998888888888888888899999999998888888888888888888888887765321
Q ss_pred CCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCc
Q 042887 325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPH 404 (628)
Q Consensus 325 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 404 (628)
..+..++ +|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.
T Consensus 170 ------~~l~~l~-------------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 170 ------EALSHLH-------------------------GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp ------HHHTTCT-------------------------TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ------hHhcccC-------------------------CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 1233333 444444445555555556677788888888888877666666
Q ss_pred CCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhc
Q 042887 405 AIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN 484 (628)
Q Consensus 405 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~ 484 (628)
......+|+.|++++|++++..+..+..+++|+.|++++|++++..+..+.++++| +.|++++|++++..|..|.+
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL----QEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTC----CEEECCSSCCSEECTTTBTT
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccC----CEEECCCCccceECHHHhcC
Confidence 66666688888888888886555677788888888888888887777777777777 77788888887777777777
Q ss_pred cCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhh
Q 042887 485 LRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE 555 (628)
Q Consensus 485 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 555 (628)
+++|++|++++|++++..+..|..+++|++|++++|++...-+ ...-...+..+++.++...-..|..+.
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWVFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhHHhhhhccccCccCceeCCchHHc
Confidence 7888888888888776666667777778888888877764221 111112233344555555444444443
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-39 Score=340.66 Aligned_cols=368 Identities=22% Similarity=0.274 Sum_probs=212.9
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCC-------------CEEecccCcCcccccccccCCCCCCEeecccccCcc
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSAL-------------EAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSC 224 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~ 224 (628)
++++++|++|++++|.+.+.+|..++.+++| ++|++++|.+++ +|.. .++|++|++++|.+++
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE 105 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc
Confidence 4566667777777777766666666666553 677777776664 2321 3567777777777764
Q ss_pred cCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccc
Q 042887 225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFN 304 (628)
Q Consensus 225 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 304 (628)
+|.. +++|++|++++|.++ .+|.. .++|++|++++|++++ +| .|+++++|++|++++|+++++ |..
T Consensus 106 -lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p~~-- 171 (454)
T 1jl5_A 106 -LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PDL-- 171 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CCC--
T ss_pred -cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCccc-CCC--
Confidence 4532 366777777777776 34421 2567777777777775 44 477777777777777777653 222
Q ss_pred cCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhc
Q 042887 305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKN 384 (628)
Q Consensus 305 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 384 (628)
.++|++|++++|+++.++ .+..+++|+.|++++|.+++... ...+++.|++++|.+. .+| .+..
T Consensus 172 -~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~n~l~-~lp-~~~~ 235 (454)
T 1jl5_A 172 -PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILE-ELP-ELQN 235 (454)
T ss_dssp -CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCS-SCC-CCTT
T ss_pred -cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCcCCC-----CcCcccEEECcCCcCC-ccc-ccCC
Confidence 246777777777766532 25566777777777777765321 2236777777777776 445 3677
Q ss_pred cCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhccc
Q 042887 385 LVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLS 464 (628)
Q Consensus 385 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~ 464 (628)
+++|+.|++++|++.+ +|.. +++|+.|++++|++++ +|.. .++|++|++++|++++. |.. .++|
T Consensus 236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L---- 299 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNL---- 299 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTC----
T ss_pred CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcC----
Confidence 7777777777777764 3332 3677777777777774 3432 36777777777777652 211 1334
Q ss_pred ceEEcCCCcCccccchhhhcc-CCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCC
Q 042887 465 RLLDLSGNLLGGSIPLEVGNL-RNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR 543 (628)
Q Consensus 465 ~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 543 (628)
+.|++++|++++. + .+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++
T Consensus 300 ~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 300 YYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp CEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence 6677777777642 1 22 477778888887775 4433 467778888888777 4554 357778888888
Q ss_pred Ccccc--cCchhhhcc-------------cCCCeEeccCCcCcc--cCCCCCCCCCCCcccccCCCC
Q 042887 544 NNLSG--QIPKYLENL-------------LFLAYLNLSYNHFEG--EVPRKGVFGNRTGIHLIGNER 593 (628)
Q Consensus 544 N~l~~--~~~~~~~~l-------------~~L~~L~ls~N~l~~--~~p~~~~~~~l~~~~~~~n~~ 593 (628)
|++++ .+|.++..+ ++|+.|++++|++++ .+| .+++.+.+.+|..
T Consensus 367 N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~ 428 (454)
T 1jl5_A 367 NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERV 428 (454)
T ss_dssp SCCSSCCCCCTTCCEEECCC-----------------------------------------------
T ss_pred CCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----hhHhheeCcCccc
Confidence 88776 566777666 667777777777776 444 2344455554443
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.2e-39 Score=336.51 Aligned_cols=352 Identities=17% Similarity=0.210 Sum_probs=268.3
Q ss_pred ccccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCC
Q 042887 155 LIQRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNIS 234 (628)
Q Consensus 155 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~ 234 (628)
...++++++|++||+++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + +++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 34567889999999999999975 5 699999999999999999975 3 89999999999999999964 4 89999
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL 314 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 314 (628)
+|++|++++|.++ .+| +..+++|++|++++|++++. .++++++|++|++++|+..+.. .+..+++|++|++
T Consensus 107 ~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 KLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp TCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred cCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 9999999999998 465 34699999999999999975 3889999999999999554333 5888999999999
Q ss_pred cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394 (628)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 394 (628)
++|++++++ +..+++|+.|++++|.+++.. +..++ +++.|++++|++++ +| +..+++|+.|+++
T Consensus 178 s~n~l~~l~---------l~~l~~L~~L~l~~N~l~~~~---l~~l~-~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 178 SFNKITELD---------VSQNKLLNRLNCDTNNITKLD---LNQNI-QLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp CSSCCCCCC---------CTTCTTCCEEECCSSCCSCCC---CTTCT-TCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred CCCccceec---------cccCCCCCEEECcCCcCCeec---cccCC-CCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 999998742 566789999999999998763 44444 78899999999887 44 7788889999999
Q ss_pred cccccccCCcCCCCCC-------CCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887 395 YNQLTGTIPHAIGELK-------NLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL 467 (628)
Q Consensus 395 ~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L 467 (628)
+|++.+..+..+..+. +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|... .++ +.|
T Consensus 242 ~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L----~~L 312 (457)
T 3bz5_A 242 VNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGI----TEL 312 (457)
T ss_dssp SSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCC----SCC
T ss_pred CCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---Ccc----eEe
Confidence 9988876544433332 33444444444433333 3445555555555555444433211 122 222
Q ss_pred EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
+ ++++++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|.++
T Consensus 313 ~-------------l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~ 368 (457)
T 3bz5_A 313 D-------------LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFE 368 (457)
T ss_dssp C-------------CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEE
T ss_pred c-------------hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEE
Confidence 2 33446888899999998874 27888889999999998874 356677788888888
Q ss_pred ccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887 548 GQIPKYLENLLFLAYLNLSYNHFEGEVPRK 577 (628)
Q Consensus 548 ~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~ 577 (628)
+. ..+..|+.+++++|+++|.+|..
T Consensus 369 g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 369 AE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ec-----ceeeecCccccccCcEEEEcChh
Confidence 65 35667888999999999998853
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-37 Score=340.62 Aligned_cols=344 Identities=19% Similarity=0.214 Sum_probs=222.1
Q ss_pred CcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEE
Q 042887 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEII 239 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L 239 (628)
.+.+++.|++++|.+....+..|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788999999999988888888999999999999999998888899999999999999999998888888999999999
Q ss_pred EeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcC
Q 042887 240 SLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL 319 (628)
Q Consensus 240 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l 319 (628)
+|++|.++ .+|..++..+++|++|+|++|.+++..|..|+++++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 99999998 777777667888888888888888777777888888888888888877542 44556666676666655
Q ss_pred CCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc
Q 042887 320 GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399 (628)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 399 (628)
+.+. . .++|+.|++++|.+.
T Consensus 205 ~~l~-----------~-------------------------------------------------~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 205 STLA-----------I-------------------------------------------------PIAVEELDASHNSIN 224 (597)
T ss_dssp SEEE-----------C-------------------------------------------------CTTCSEEECCSSCCC
T ss_pred cccc-----------C-------------------------------------------------CchhheeeccCCccc
Confidence 3211 0 112333333333333
Q ss_pred ccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc
Q 042887 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP 479 (628)
Q Consensus 400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~ 479 (628)
...+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+
T Consensus 225 ~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~------------------------- 274 (597)
T 3oja_B 225 VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF------------------------- 274 (597)
T ss_dssp EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG-------------------------
T ss_pred cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh-------------------------
Confidence 221111 1356666666666653 3445555555555555555554444444
Q ss_pred hhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccC
Q 042887 480 LEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559 (628)
Q Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 559 (628)
+.+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++.. +..+++
T Consensus 275 ---~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~ 346 (597)
T 3oja_B 275 ---VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHT 346 (597)
T ss_dssp ---TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCC
T ss_pred ---cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCC
Confidence 444555555555555543 2333444555555555555555 34445555556666666666655332 344556
Q ss_pred CCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCcccCCCCCCCCC
Q 042887 560 LAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGLEELHLPSC 606 (628)
Q Consensus 560 L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c 606 (628)
|+.|++++|++++... ...+..+....+.+++..|+....+....|
T Consensus 347 L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 347 LKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp CSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred CCEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcchhccCCcc
Confidence 6666666666655422 122334444455566677765444333333
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3e-37 Score=324.33 Aligned_cols=386 Identities=21% Similarity=0.233 Sum_probs=271.6
Q ss_pred cCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCC-------------CEeecccccCcccCC
Q 042887 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSL-------------NYLSISENNFSCKLP 227 (628)
Q Consensus 161 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~N~i~~~~p 227 (628)
.+.|++|++++|.+ +.+|++++++++|++|++++|.+.+..|..++.+.+| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 46899999999999 7899999999999999999999999999999999875 999999999985 55
Q ss_pred cCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCC
Q 042887 228 LSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLS 307 (628)
Q Consensus 228 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 307 (628)
.. .++|++|++++|.+++ +|.. +++|++|++++|++++. +.. .++|++|++++|++++ .| .|..++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 42 4789999999999994 7752 58999999999999853 221 2799999999999997 45 599999
Q ss_pred CCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCC
Q 042887 308 NLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVN 387 (628)
Q Consensus 308 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 387 (628)
+|++|++++|++++++.. .++|+.|++++|.+++.. .+..+. +++.|++++|.+++ +|.. .++
T Consensus 154 ~L~~L~l~~N~l~~lp~~----------~~~L~~L~L~~n~l~~l~--~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~ 216 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL----------PPSLEFIAAGNNQLEELP--ELQNLP-FLTAIYADNNSLKK-LPDL---PLS 216 (454)
T ss_dssp TCCEEECCSSCCSCCCCC----------CTTCCEEECCSSCCSSCC--CCTTCT-TCCEEECCSSCCSS-CCCC---CTT
T ss_pred CCCEEECCCCcCcccCCC----------cccccEEECcCCcCCcCc--cccCCC-CCCEEECCCCcCCc-CCCC---cCc
Confidence 999999999999875421 248999999999998853 466665 89999999999986 3432 258
Q ss_pred cCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL 467 (628)
Q Consensus 388 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L 467 (628)
|+.|++++|.+. .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|++++ +|..+ ++| +.|
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~~---~~L----~~L 282 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPELP---QSL----TFL 282 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCCC---TTC----CEE
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCccc---CcC----CEE
Confidence 999999999998 566 48999999999999999985 4543 4899999999999985 55433 455 889
Q ss_pred EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCC-CCCCeEECcCceeeeecCccccCCCCCCEEECCCCcc
Q 042887 468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSAC-TTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546 (628)
Q Consensus 468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 546 (628)
++++|++++. +. + .++|++|++++|++++. + .+ ++|++|++++|++++ +|.. +++|++|++++|++
T Consensus 283 ~ls~N~l~~l-~~-~--~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l 349 (454)
T 1jl5_A 283 DVSENIFSGL-SE-L--PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHL 349 (454)
T ss_dssp ECCSSCCSEE-SC-C--CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred ECcCCccCcc-cC-c--CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcc
Confidence 9999999863 21 1 26899999999999853 2 23 589999999999995 5654 58999999999999
Q ss_pred cccCchhhhcccCCCeEeccCCcCcc--cCCCC-CCC-------------CCCCcccccCCCCCc-----ccCCCCCCCC
Q 042887 547 SGQIPKYLENLLFLAYLNLSYNHFEG--EVPRK-GVF-------------GNRTGIHLIGNERLC-----GGLEELHLPS 605 (628)
Q Consensus 547 ~~~~~~~~~~l~~L~~L~ls~N~l~~--~~p~~-~~~-------------~~l~~~~~~~n~~~c-----~~~~~l~l~~ 605 (628)
++ +|. .+++|++|++++|++++ .+|.. +.+ ++++.+++++|+... ..+..|.+..
T Consensus 350 ~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~ 425 (454)
T 1jl5_A 350 AE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNS 425 (454)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------
T ss_pred cc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhheeCcC
Confidence 95 555 47899999999999999 55532 222 678888888887553 2344556666
Q ss_pred CCCCC
Q 042887 606 CHFGR 610 (628)
Q Consensus 606 c~~~~ 610 (628)
|.+..
T Consensus 426 ~~~~~ 430 (454)
T 1jl5_A 426 ERVVD 430 (454)
T ss_dssp -----
T ss_pred cccCC
Confidence 66533
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.8e-37 Score=323.05 Aligned_cols=353 Identities=18% Similarity=0.193 Sum_probs=271.5
Q ss_pred cccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChh
Q 042887 174 LIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLN 253 (628)
Q Consensus 174 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 253 (628)
..+..+..++.+++|++|++++|.+++. | .|+.+++|++|++++|.+++. | ++.+++|++|++++|.++ .+|
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--
Confidence 3445556788999999999999999965 5 799999999999999999964 4 899999999999999998 455
Q ss_pred hhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccc
Q 042887 254 IGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333 (628)
Q Consensus 254 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 333 (628)
+..+++|++|++++|++++. | ++.+++|++|++++|+++++ .+..+++|++|++++|...+. . .+
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~------~--~~ 166 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITK------L--DV 166 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCC------C--CC
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccc------c--cc
Confidence 34699999999999999974 3 89999999999999999975 388899999999999953321 1 35
Q ss_pred cCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCC
Q 042887 334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQ 413 (628)
Q Consensus 334 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 413 (628)
..+++|+.|++++|++++.. +..++ +++.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+
T Consensus 167 ~~l~~L~~L~ls~n~l~~l~---l~~l~-~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITELD---VSQNK-LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp TTCTTCCEEECCSSCCCCCC---CTTCT-TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred ccCCcCCEEECCCCccceec---cccCC-CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 67789999999999988864 44444 788888888888865 37788888888888888886 44 77888888
Q ss_pred eEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887 414 GLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493 (628)
Q Consensus 414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 493 (628)
.|++++|++++.. +..+++|+.|++++|++ +.|++++|.+.+.+| ++.+++|+.|++
T Consensus 237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L------------------~~L~l~~n~~~~~~~--~~~l~~L~~L~L 293 (457)
T 3bz5_A 237 YFDCSVNPLTELD---VSTLSKLTTLHCIQTDL------------------LEIDLTHNTQLIYFQ--AEGCRKIKELDV 293 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTCCC------------------SCCCCTTCTTCCEEE--CTTCTTCCCCCC
T ss_pred EEEeeCCcCCCcC---HHHCCCCCEEeccCCCC------------------CEEECCCCccCCccc--ccccccCCEEEC
Confidence 8888888888654 34566677777666543 445677776665555 456677777777
Q ss_pred cCCcCcccCCc--------cccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEec
Q 042887 494 SENHFSNEIPV--------TLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNL 565 (628)
Q Consensus 494 s~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 565 (628)
++|...+.+|. .+..+++|++|++++|++++. + +..+++|+.|++++|++++ ++.|..|++
T Consensus 294 s~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l 362 (457)
T 3bz5_A 294 THNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPA 362 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSG
T ss_pred CCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccc
Confidence 77765544432 244557889999999999863 3 7888999999999999885 245667788
Q ss_pred cCCcCcccCCCCCCCCCCCcccccCCCCCcccC
Q 042887 566 SYNHFEGEVPRKGVFGNRTGIHLIGNERLCGGL 598 (628)
Q Consensus 566 s~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~ 598 (628)
++|.++|. +.+..+..++++.|. +.|.+
T Consensus 363 ~~n~l~g~----~~~~~l~~l~l~~N~-l~g~i 390 (457)
T 3bz5_A 363 LNNNFEAE----GQTITMPKETLTNNS-LTIAV 390 (457)
T ss_dssp GGTSEEEE----EEEEECCCBCCBTTB-EEEEC
T ss_pred cCCcEEec----ceeeecCccccccCc-EEEEc
Confidence 99988886 223445566666663 34443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-36 Score=314.56 Aligned_cols=312 Identities=23% Similarity=0.239 Sum_probs=228.7
Q ss_pred CcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEE
Q 042887 160 NLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEII 239 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L 239 (628)
.+.+++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46789999999999998777788999999999999999998888899999999999999999998888889999999999
Q ss_pred EeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcC
Q 042887 240 SLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNL 319 (628)
Q Consensus 240 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l 319 (628)
++++|.++ .+|..++..+++|++|++++|++++..+..|+++++|++|++++|++++. .+..+++|++|++++|.+
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99999998 78888777799999999999999988888899999999999999988754 356677888888888876
Q ss_pred CCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc
Q 042887 320 GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399 (628)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 399 (628)
+.+. ..++|+.|++++|. +... |
T Consensus 199 ~~~~-----------~~~~L~~L~l~~n~-------------------------l~~~-~-------------------- 221 (390)
T 3o6n_A 199 STLA-----------IPIAVEELDASHNS-------------------------INVV-R-------------------- 221 (390)
T ss_dssp SEEE-----------CCSSCSEEECCSSC-------------------------CCEE-E--------------------
T ss_pred cccC-----------CCCcceEEECCCCe-------------------------eeec-c--------------------
Confidence 5421 11233344443333 3221 1
Q ss_pred ccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc
Q 042887 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP 479 (628)
Q Consensus 400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~ 479 (628)
. ...++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++| +.|++++|++++ ++
T Consensus 222 ----~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~-~~ 288 (390)
T 3o6n_A 222 ----G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL----ERLYISNNRLVA-LN 288 (390)
T ss_dssp ----C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC----CEEECCSSCCCE-EE
T ss_pred ----c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC----CEEECCCCcCcc-cC
Confidence 0 0123455555555555432 345555555555555555555555555555555 556666666653 34
Q ss_pred hhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccccc
Q 042887 480 LEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ 549 (628)
Q Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 549 (628)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|+++..
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 44556677777777777777 4555667777888888888887743 3 56778888899999888754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-37 Score=320.08 Aligned_cols=335 Identities=19% Similarity=0.200 Sum_probs=262.8
Q ss_pred CCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcE
Q 042887 184 NFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNF 263 (628)
Q Consensus 184 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 263 (628)
.+++++.|++++|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 4689999999999998776677899999999999999999877889999999999999999998 555555556899999
Q ss_pred EecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceee
Q 042887 264 LSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLY 343 (628)
Q Consensus 264 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 343 (628)
|++++|+++...+..|+++++|++|++++|++++..+..|..+++|++|++++|+++..+ +.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~--------- 183 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---------LS--------- 183 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------GG---------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------cc---------
Confidence 999999998666666788999999999999988887777888888888888888775421 11
Q ss_pred cccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccc
Q 042887 344 LNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLR 423 (628)
Q Consensus 344 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 423 (628)
.+++|+.+++++|.+.+. ...++|+.|++++|.+.
T Consensus 184 ----------------------------------------~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 184 ----------------------------------------LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN 218 (390)
T ss_dssp ----------------------------------------GCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC
T ss_pred ----------------------------------------cccccceeeccccccccc-----CCCCcceEEECCCCeee
Confidence 223334444444443321 12346888999999888
Q ss_pred cccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCC
Q 042887 424 GTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIP 503 (628)
Q Consensus 424 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 503 (628)
.. |.. ..++|+.|++++|++++. ..+..+++| +.|++++|.+++..|..+..+++|++|++++|++++ +|
T Consensus 219 ~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~ 288 (390)
T 3o6n_A 219 VV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGL----VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN 288 (390)
T ss_dssp EE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTC----SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EE
T ss_pred ec-ccc--ccccccEEECCCCCCccc--HHHcCCCCc----cEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cC
Confidence 54 332 247899999999999853 567777777 889999999998888899999999999999999985 45
Q ss_pred ccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCC
Q 042887 504 VTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNR 583 (628)
Q Consensus 504 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l 583 (628)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++... +..+++|+.|++++|++.+... ...+..+
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~ 363 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNV 363 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTC
T ss_pred cccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH-HHHHHHH
Confidence 66678899999999999998 56777888899999999999998553 6678889999999999987533 2334555
Q ss_pred CcccccCCCCCccc
Q 042887 584 TGIHLIGNERLCGG 597 (628)
Q Consensus 584 ~~~~~~~n~~~c~~ 597 (628)
....+.+++..|..
T Consensus 364 ~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 364 ARPAVDDADQHCKI 377 (390)
T ss_dssp CTTTBCCCCSCCCT
T ss_pred HhhcccccCceecc
Confidence 55566677777753
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-35 Score=299.56 Aligned_cols=306 Identities=21% Similarity=0.312 Sum_probs=156.8
Q ss_pred CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI 238 (628)
Q Consensus 159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~ 238 (628)
..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ |..+++|++|++++|.++. + ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 3455666666666666532 2 25566666666666666654332 6666666666666666553 2 23555555555
Q ss_pred EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887 239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN 318 (628)
Q Consensus 239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~ 318 (628)
|++++|.++ .++. +..+++|+.|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 115 L~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 115 LYLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EECcCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 555555554 2332 223444444444444322111 123333444444444333332211 2223333333333222
Q ss_pred CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccc
Q 042887 319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQL 398 (628)
Q Consensus 319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 398 (628)
+. +.. .+..+++|+.+++++|.+
T Consensus 189 l~-------------------------------------------------------~~~--~~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 189 IE-------------------------------------------------------DIS--PLASLTSLHYFTAYVNQI 211 (347)
T ss_dssp CC-------------------------------------------------------CCG--GGGGCTTCCEEECCSSCC
T ss_pred cc-------------------------------------------------------ccc--cccCCCccceeecccCCC
Confidence 21 111 134445555555555555
Q ss_pred cccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCcccc
Q 042887 399 TGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSI 478 (628)
Q Consensus 399 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~ 478 (628)
.+..+ +..+++|++|++++|.+++..+ +..+++|+ .|++++|.+++.
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~----------------------------~L~l~~n~l~~~- 258 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT----------------------------WLEIGTNQISDI- 258 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC----------------------------EEECCSSCCCCC-
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC----------------------------EEECCCCccCCC-
Confidence 43322 4445555555555555543222 44444444 445555554432
Q ss_pred chhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887 479 PLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558 (628)
Q Consensus 479 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 558 (628)
..+..+++|++|++++|++++. ..+..+++|++|++++|++++..|..+..+++|++|++++|++++..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 2455566666666666666643 345666677777777777766666666677777777777777765544 66677
Q ss_pred CCCeEeccCCcCc
Q 042887 559 FLAYLNLSYNHFE 571 (628)
Q Consensus 559 ~L~~L~ls~N~l~ 571 (628)
+|++|++++|+|+
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 7777777777664
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.5e-35 Score=297.99 Aligned_cols=284 Identities=24% Similarity=0.332 Sum_probs=213.3
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~ 237 (628)
+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. .+|..+++|++|++++|.+++. +. +..+++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~ 135 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMY 135 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCC
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCcee
Confidence 5678899999999999986554 99999999999999999853 4699999999999999999854 43 89999999
Q ss_pred EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317 (628)
Q Consensus 238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n 317 (628)
+|++++|.....++. +..+++|++|++++|.+....+ +..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 136 ~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 136 SLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN 209 (347)
T ss_dssp EEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred EEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccC
Confidence 999999976645544 3469999999999999986544 8899999999999999986554 777888888888877
Q ss_pred cCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccc
Q 042887 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397 (628)
Q Consensus 318 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 397 (628)
.+... ..+..+++|+.|++++|.
T Consensus 210 ~l~~~---------------------------------------------------------~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 210 QITDI---------------------------------------------------------TPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCCCC---------------------------------------------------------GGGGGCTTCCEEECCSSC
T ss_pred CCCCC---------------------------------------------------------chhhcCCcCCEEEccCCc
Confidence 66431 014567788999999999
Q ss_pred ccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc
Q 042887 398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS 477 (628)
Q Consensus 398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~ 477 (628)
+.+..+ +..+++|++|++++|.+++. +.+..+++|++|++++|++++. ..+..+++| +.|++++|++++.
T Consensus 233 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L----~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 233 ITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL----NSLFLNNNQLGNE 302 (347)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC----SEEECCSSCCCGG
T ss_pred cCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC----CEEECcCCcCCCc
Confidence 986544 88999999999999999853 4577788888888888877643 234444444 5555555555555
Q ss_pred cchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 478 IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 478 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
.+..+..+++|++|++++|++++..| +..+++|++|++++|.|
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 55555555555555555555554333 44455555555555554
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-35 Score=294.61 Aligned_cols=259 Identities=30% Similarity=0.481 Sum_probs=233.4
Q ss_pred CCceeecccCCccc--ccchHHHhccccccEEEccC-CcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCe
Q 042887 338 QMEMLYLNTNKFGG--VFLRSIANLSAKITVIGMGD-NQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQG 414 (628)
Q Consensus 338 ~L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 414 (628)
+++.|++++|.+++ ..+..+..+. +|+.|++++ |.+.+.+|..+.++++|++|++++|++.+..|..|..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 56666666666666 5566666665 788888884 8888888999999999999999999999899999999999999
Q ss_pred EecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCc-chhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887 415 LALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQ-NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493 (628)
Q Consensus 415 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 493 (628)
|++++|.+++..|..+..+++|++|++++|++++..|..+..++ +| +.|++++|++++..|..+..++ |++|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L----~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF----TSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC----CEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC----cEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 99999999999999999999999999999999999999999887 77 8999999999999999999987 999999
Q ss_pred cCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCccc
Q 042887 494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE 573 (628)
Q Consensus 494 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 573 (628)
++|.+++..|..+..+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99999999999999999999999999999976665 88899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccCCCCCcccCCCCCCCCCC
Q 042887 574 VPRKGVFGNRTGIHLIGNERLCGGLEELHLPSCH 607 (628)
Q Consensus 574 ~p~~~~~~~l~~~~~~~n~~~c~~~~~l~l~~c~ 607 (628)
+|..+.+++++.+++.+|+++|+. .++.|.
T Consensus 284 ip~~~~l~~L~~l~l~~N~~lc~~----p~~~C~ 313 (313)
T 1ogq_A 284 IPQGGNLQRFDVSAYANNKCLCGS----PLPACT 313 (313)
T ss_dssp CCCSTTGGGSCGGGTCSSSEEEST----TSSCCC
T ss_pred CCCCccccccChHHhcCCCCccCC----CCCCCC
Confidence 999888999999999999999985 344563
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=7.8e-38 Score=332.15 Aligned_cols=380 Identities=16% Similarity=0.155 Sum_probs=228.2
Q ss_pred CcccEEEccCCccccccchh-hhCCCCCCEEecccCcCccc----ccccccCCCCCCEeecccccCcccCCcCcc-CCC-
Q 042887 162 LKLEMIDVGDNQLIGKFPDF-IANFSALEAIDISANMLGGR----IPDSLCQLRSLNYLSISENNFSCKLPLSIW-NIS- 234 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~-~l~- 234 (628)
++|++||+++|+++...... +..+++|++|++++|.++.. ++..+..+++|++|+|++|.+++..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888888887654433 77788888888888887743 355667777788888888777654333322 233
Q ss_pred ---CCCEEEeecccCcc----cCChhhhhCCCCCcEEecccCccccccccccc-----CCCCCCEEEcccccceeecccc
Q 042887 235 ---SLEIISLHSNRFEG----SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFS-----NASNLQVLDVYKNHFSGQVKID 302 (628)
Q Consensus 235 ---~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~~~~~~ 302 (628)
+|++|++++|.+++ .++..+ ..+++|++|++++|.+++..+..+. ..++|++|++++|++++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHH-ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-
Confidence 56666666666652 122222 2355555555555555433222221 133455555555554432211
Q ss_pred cccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHh----ccccccEEEccCCcceee-
Q 042887 303 FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIAN----LSAKITVIGMGDNQISGT- 377 (628)
Q Consensus 303 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~~- 377 (628)
.....+..+++|+.|++++|.++......+.. ..++++.|++++|.+++.
T Consensus 161 -------------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 161 -------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp -------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred -------------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 11222333444455555555444433333322 112556666666655542
Q ss_pred ---CchhhhccCCcCeeeeccccccccC-----CcCCCCCCCCCeEecccCccccc----cCccccCCCCCCeEecCCcc
Q 042887 378 ---IPSEIKNLVNINAFGVEYNQLTGTI-----PHAIGELKNLQGLALVRNSLRGT----IPDTLGNLTLLNRLFLGFNN 445 (628)
Q Consensus 378 ---~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~ 445 (628)
++..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 3455667778888888888776432 22334577888888888888753 46666778888888888888
Q ss_pred cccccCCcccCC-----cchhcccceEEcCCCcCccc----cchhhhccCCCCEeeCcCCcCcccCCccccC-----CCC
Q 042887 446 LQGNVPSSLGNC-----QNLMTLSRLLDLSGNLLGGS----IPLEVGNLRNLAEFDLSENHFSNEIPVTLSA-----CTT 511 (628)
Q Consensus 446 l~~~~~~~~~~l-----~~L~~l~~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~ 511 (628)
+++..+..+... ++| +.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++
T Consensus 296 i~~~~~~~l~~~l~~~~~~L----~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQL----ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCC----CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CchHHHHHHHHHhccCCccc----eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 765544433322 345 7778888887754 3455666788888888888877654444432 567
Q ss_pred CCeEECcCceeee----ecCccccCCCCCCEEECCCCcccccCchhhh-----cccCCCeEeccCCcCcc
Q 042887 512 LEYLHLQGNSFSG----SLPLSLKTLKSIKELDLSRNNLSGQIPKYLE-----NLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 512 L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~ls~N~l~~ 572 (628)
|++|++++|.+++ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+..
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 8888888888775 5667777778888888888887754333332 12357777777766654
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-34 Score=315.89 Aligned_cols=311 Identities=19% Similarity=0.201 Sum_probs=218.2
Q ss_pred CCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEE
Q 042887 234 SSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLF 313 (628)
Q Consensus 234 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 313 (628)
.+++.|++++|.+. .+|..++..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|+.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 44555555555554 44554444455555555555555555555555666666666666666555555555566666666
Q ss_pred ccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeee
Q 042887 314 LSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGV 393 (628)
Q Consensus 314 L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 393 (628)
+++|.++.++.. .+.++++|+.|++++| .+.+..|..+..+++|+.|++
T Consensus 130 L~~n~l~~l~~~------~~~~l~~L~~L~Ls~N-------------------------~l~~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 130 LERNDLSSLPRG------IFHNTPKLTTLSMSNN-------------------------NLERIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp CCSSCCCCCCTT------TTTTCTTCCEEECCSS-------------------------CCCBCCTTTTTTCTTCCEEEC
T ss_pred eeCCCCCCCCHH------HhccCCCCCEEEeeCC-------------------------cCCCCChhhhhcCCcCcEEEC
Confidence 666655543322 1222333333333333 333344455666667777777
Q ss_pred ccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887 394 EYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL 473 (628)
Q Consensus 394 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~ 473 (628)
++|.+.+.. +..+++|+.|++++|.+++ +...++|+.|++++|.++...+... ++| +.|++++|.
T Consensus 179 ~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~---~~L----~~L~L~~n~ 243 (597)
T 3oja_B 179 SSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVN---VEL----TILKLQHNN 243 (597)
T ss_dssp TTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCC---SCC----CEEECCSSC
T ss_pred cCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccccC---CCC----CEEECCCCC
Confidence 777766432 4456777888888887764 2344678888888888875444332 345 788999999
Q ss_pred CccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchh
Q 042887 474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKY 553 (628)
Q Consensus 474 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 553 (628)
+++ +..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence 985 4678999999999999999999999999999999999999999995 5777788999999999999999 57788
Q ss_pred hhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887 554 LENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG 597 (628)
Q Consensus 554 ~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 597 (628)
+..+++|+.|++++|++++.. ...+++++.+++++|++.|..
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred cccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 899999999999999998753 456789999999999999853
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.8e-33 Score=283.23 Aligned_cols=288 Identities=22% Similarity=0.259 Sum_probs=215.3
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL 314 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 314 (628)
+++.++++++.++ .+|..+ .++|+.|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4667777777766 666554 356777777777777666777788888888888888887777777888888888888
Q ss_pred cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394 (628)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 394 (628)
++|+++.++...+ + +++.|++++|.+.+..+..+..+++|+.|+++
T Consensus 110 ~~n~l~~l~~~~~---------~-------------------------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVEIPPNLP---------S-------------------------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCSCCSSCC---------T-------------------------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCccCcccc---------c-------------------------cCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 8887765432210 2 34444445555554455567777888888888
Q ss_pred cccccc--cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCC
Q 042887 395 YNQLTG--TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472 (628)
Q Consensus 395 ~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N 472 (628)
+|.+.. ..+..+..+ +|++|++++|++++ +|..+. ++|++|++++|++++..+..+..+++| +.|++++|
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L----~~L~L~~N 227 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL----YRLGLGHN 227 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC----SCCBCCSS
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC----CEEECCCC
Confidence 887753 566777777 88888888888885 454443 688888888888887777888888887 78888999
Q ss_pred cCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccC------CCCCCEEECCCCcc
Q 042887 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT------LKSIKELDLSRNNL 546 (628)
Q Consensus 473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l 546 (628)
++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|++
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 888777778888899999999999988 67777888899999999999998766666654 36788999999998
Q ss_pred c--ccCchhhhcccCCCeEeccCCc
Q 042887 547 S--GQIPKYLENLLFLAYLNLSYNH 569 (628)
Q Consensus 547 ~--~~~~~~~~~l~~L~~L~ls~N~ 569 (628)
. ...|..|..+++|+.+++++|+
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 7 6778889999999999998885
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.4e-33 Score=282.41 Aligned_cols=296 Identities=18% Similarity=0.235 Sum_probs=216.5
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
.+++.++++++.++. +|..+. +++++|++++|.+++..+..|+.+++|++|+|++|.+++..|..|.++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 368899999999984 555443 68999999999999888889999999999999999999888999999999999999
Q ss_pred ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccccee--ecccccccCCCCCEEEccCCcC
Q 042887 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG--QVKIDFNRLSNLSRLFLSKNNL 319 (628)
Q Consensus 242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~n~l 319 (628)
++|.++ .+|..++ ++|++|++++|++++..+..|.++++|++|++++|.++. ..+..|..+++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999998 7887664 789999999999998888889999999999999999864 5667788889999999998888
Q ss_pred CCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccc
Q 042887 320 GTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLT 399 (628)
Q Consensus 320 ~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 399 (628)
+.++... .+ +++.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 184 ~~l~~~~---------~~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 184 TTIPQGL---------PP-------------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp CSCCSSC---------CT-------------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred ccCCccc---------cc-------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc
Confidence 6543210 01 4555555555555555666667777777777777776
Q ss_pred ccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccc
Q 042887 400 GTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIP 479 (628)
Q Consensus 400 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~ 479 (628)
+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.....
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~-------------------- 288 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY-------------------- 288 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC--------------------
T ss_pred eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc--------------------
Confidence 666666667777777777777776 55666666777777777777776554444432210
Q ss_pred hhhhccCCCCEeeCcCCcCcc--cCCccccCCCCCCeEECcCce
Q 042887 480 LEVGNLRNLAEFDLSENHFSN--EIPVTLSACTTLEYLHLQGNS 521 (628)
Q Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 521 (628)
....+.|+.|++++|.+.. ..|..|..+.+++.++|++|+
T Consensus 289 --~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 --NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp --CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred --ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 0112455666666666542 345566666666666666664
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.5e-33 Score=281.56 Aligned_cols=289 Identities=22% Similarity=0.251 Sum_probs=178.6
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL 314 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 314 (628)
+++.++++++.++ .+|..+ .+++++|++++|++++..+..|+++++|++|++++|++++..+..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 3455555555554 444433 245556666666666555555666666666666666666665666666666666666
Q ss_pred cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394 (628)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 394 (628)
++|+++.++... .++|+.|++++|. +.+..+..+.++++|+.|+++
T Consensus 108 s~n~l~~l~~~~---------~~~L~~L~l~~n~-------------------------l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 108 SKNQLKELPEKM---------PKTLQELRVHENE-------------------------ITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CSSCCSBCCSSC---------CTTCCEEECCSSC-------------------------CCBBCHHHHTTCTTCCEEECC
T ss_pred CCCcCCccChhh---------cccccEEECCCCc-------------------------ccccCHhHhcCCccccEEECC
Confidence 666665433211 0234444444443 333334445555666666666
Q ss_pred cccccc--cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCC
Q 042887 395 YNQLTG--TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472 (628)
Q Consensus 395 ~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N 472 (628)
+|.+.. ..+..+..+++|++|++++|.+++ +|..+. ++|++|++++|++++..|..+..+++| +.|++++|
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~Ls~n 226 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL----AKLGLSFN 226 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC----CEEECCSS
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC----CEEECCCC
Confidence 665542 445556666666677776666663 333332 567777777777776666666666666 66777777
Q ss_pred cCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccC------CCCCCEEECCCCcc
Q 042887 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKT------LKSIKELDLSRNNL 546 (628)
Q Consensus 473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~l 546 (628)
++++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.. .+.|+.|++++|++
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 777666666777777777777777777 56666777777777777777777655555543 36778888888887
Q ss_pred cc--cCchhhhcccCCCeEeccCCc
Q 042887 547 SG--QIPKYLENLLFLAYLNLSYNH 569 (628)
Q Consensus 547 ~~--~~~~~~~~l~~L~~L~ls~N~ 569 (628)
.. ..|..|..+..++.+++++|+
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccCccccccccceeEEEecccC
Confidence 63 556778888888888888874
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.9e-33 Score=284.53 Aligned_cols=294 Identities=18% Similarity=0.197 Sum_probs=191.7
Q ss_pred cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887 163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH 242 (628)
Q Consensus 163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~ 242 (628)
+++.++++++.++ .+|..+ .++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6889999999987 456544 3689999999999998888889999999999999999998888899999999999999
Q ss_pred cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccccccee--ecccccccCCCCCEEEccCCcCC
Q 042887 243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSG--QVKIDFNRLSNLSRLFLSKNNLG 320 (628)
Q Consensus 243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~n~l~ 320 (628)
+|.++ .+|..++ ++|++|++++|+++...+..|.++++|++|++++|.++. ..+..|..+ +|++|++++|+++
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99998 7777654 788888888888887766778888888888888888853 455566665 6777777777665
Q ss_pred CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccc
Q 042887 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400 (628)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 400 (628)
.++... .+ +++.|++++|.+.+..+..+..+++|+.|++++|++.+
T Consensus 186 ~l~~~~---------~~-------------------------~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 186 GIPKDL---------PE-------------------------TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SCCSSS---------CS-------------------------SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred ccCccc---------cC-------------------------CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 432210 01 23333333333333334445555555555555555554
Q ss_pred cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccch
Q 042887 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL 480 (628)
Q Consensus 401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~ 480 (628)
..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.....
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--------------------- 289 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF--------------------- 289 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC---------------------
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc---------------------
Confidence 44445555555555555555555 34444555555555555555555443333332110
Q ss_pred hhhccCCCCEeeCcCCcCc--ccCCccccCCCCCCeEECcCce
Q 042887 481 EVGNLRNLAEFDLSENHFS--NEIPVTLSACTTLEYLHLQGNS 521 (628)
Q Consensus 481 ~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~ 521 (628)
-...+.|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 290 -~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 -GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 001245666777777665 4555666667777777777664
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.9e-36 Score=321.48 Aligned_cols=372 Identities=17% Similarity=0.157 Sum_probs=250.1
Q ss_pred cCCcCcccEEEccCCcccc----ccchhhhCCCCCCEEecccCcCcccccccc-cCCC----CCCEeecccccCcc----
Q 042887 158 RLNLLKLEMIDVGDNQLIG----KFPDFIANFSALEAIDISANMLGGRIPDSL-CQLR----SLNYLSISENNFSC---- 224 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~----~L~~L~Ls~N~i~~---- 224 (628)
+..+++|++|++++|+++. .+++.+..+++|++|++++|.+....+..+ ..++ +|++|+|++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 3467789999999999985 356778889999999999999986555444 3455 79999999999984
Q ss_pred cCCcCccCCCCCCEEEeecccCcccCChhhhh----CCCCCcEEecccCcccccc----cccccCCCCCCEEEcccccce
Q 042887 225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIGF----NIPNVNFLSVGQNNFTGSL----PHSFSNASNLQVLDVYKNHFS 296 (628)
Q Consensus 225 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~ 296 (628)
.++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|++++.. +..+..+++|++|++++|.++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 45888999999999999999997544443332 3568999999999999743 566778899999999999997
Q ss_pred eeccccccc-----CCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccC
Q 042887 297 GQVKIDFNR-----LSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGD 371 (628)
Q Consensus 297 ~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 371 (628)
......+.. .++|++|++++|.++..... ..+..+..+++|+.|++++|.++......+..
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~------------ 249 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLCGIVASKASLRELALGSNKLGDVGMAELCP------------ 249 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH------------
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH--HHHHHHHhCCCccEEeccCCcCChHHHHHHHH------------
Confidence 665555442 56999999999988753211 13445666788888888888876654443332
Q ss_pred CcceeeCchhhhccCCcCeeeecccccccc----CCcCCCCCCCCCeEecccCccccccCccccC-----CCCCCeEecC
Q 042887 372 NQISGTIPSEIKNLVNINAFGVEYNQLTGT----IPHAIGELKNLQGLALVRNSLRGTIPDTLGN-----LTLLNRLFLG 442 (628)
Q Consensus 372 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~ 442 (628)
..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|+++
T Consensus 250 --------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 250 --------GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp --------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred --------HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 1112344455555555554432 2333444555555666655555433322222 2466666666
Q ss_pred Ccccccc----cCCcccCCcchhcccceEEcCCCcCccccchhhhc-----cCCCCEeeCcCCcCcc----cCCccccCC
Q 042887 443 FNNLQGN----VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN-----LRNLAEFDLSENHFSN----EIPVTLSAC 509 (628)
Q Consensus 443 ~N~l~~~----~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l 509 (628)
+|.+++. .+..+..+++| +.|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L----~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFL----LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSC----CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred CCCCchHHHHHHHHHHhhCCCc----cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 6666543 23334444555 66677777666544444432 5678888888888875 566677777
Q ss_pred CCCCeEECcCceeeeecCccc-----cCCCCCCEEECCCCcccccCchhhh
Q 042887 510 TTLEYLHLQGNSFSGSLPLSL-----KTLKSIKELDLSRNNLSGQIPKYLE 555 (628)
Q Consensus 510 ~~L~~L~Ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~~~~~~ 555 (628)
++|++|++++|++++.....+ ....+|+.|++.++.+....++.+.
T Consensus 398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~ 448 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448 (461)
T ss_dssp CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHH
Confidence 888888888888775322111 1245688888888877655554443
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-33 Score=283.19 Aligned_cols=185 Identities=30% Similarity=0.532 Sum_probs=131.7
Q ss_pred hhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCC-CCCeEecCCcccccccCCcccCCcc
Q 042887 381 EIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLT-LLNRLFLGFNNLQGNVPSSLGNCQN 459 (628)
Q Consensus 381 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~ 459 (628)
.+.++++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..++ +|++|++++|++++..|..+..++
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-
Confidence 344444444444444444444555555555666666666666655666666665 666666666666666666666654
Q ss_pred hhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEE
Q 042887 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKEL 539 (628)
Q Consensus 460 L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 539 (628)
| +.|++++|++++..|..+..+++|++|++++|++++..|. +..+++|++|++++|++++.+|..+..+++|++|
T Consensus 199 L----~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 199 L----AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp C----SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred c----cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 4 6777777777777777777888888888888888765554 6778888888888888888888888888888888
Q ss_pred ECCCCcccccCchhhhcccCCCeEeccCCc-Ccc
Q 042887 540 DLSRNNLSGQIPKYLENLLFLAYLNLSYNH-FEG 572 (628)
Q Consensus 540 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~-l~~ 572 (628)
++++|++++.+|+. ..+++|+.+++++|+ ++|
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 88888888888876 778888899999888 555
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.8e-31 Score=268.64 Aligned_cols=278 Identities=21% Similarity=0.196 Sum_probs=166.9
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL 314 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 314 (628)
.....++++|.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 3344555666665 555544 245666666666666555556666666666666666666666666666666666666
Q ss_pred cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394 (628)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 394 (628)
++|+++.++ +..+.++++|++|+++
T Consensus 108 s~n~l~~~~-------------------------------------------------------~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 108 SYNYLSNLS-------------------------------------------------------SSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CSSCCSSCC-------------------------------------------------------HHHHTTCTTCSEEECT
T ss_pred CCCcCCcCC-------------------------------------------------------HhHhCCCccCCEEECC
Confidence 666554311 1123334444444444
Q ss_pred cccccccCC-cCCCCCCCCCeEecccC-ccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCC
Q 042887 395 YNQLTGTIP-HAIGELKNLQGLALVRN-SLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN 472 (628)
Q Consensus 395 ~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N 472 (628)
+|++.+..+ ..+..+++|++|++++| .+.+..+..|..+++|++|++++|++++..|..+..+++| +.|++++|
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n 208 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV----SHLILHMK 208 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE----EEEEEECS
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC----CeecCCCC
Confidence 444443222 24555555555555555 3444445555556666666666666665556666666655 56666666
Q ss_pred cCccccchhhhccCCCCEeeCcCCcCcccCCcccc---CCCCCCeEECcCceeee----ecCccccCCCCCCEEECCCCc
Q 042887 473 LLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLS---ACTTLEYLHLQGNSFSG----SLPLSLKTLKSIKELDLSRNN 545 (628)
Q Consensus 473 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~ 545 (628)
++....+..+..+++|++|++++|++++..+..+. ..+.++.+++++|.+.+ .+|..+..+++|++|++++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 66543333344567777777777777654443332 34567777777777764 356677788888888888888
Q ss_pred ccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887 546 LSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 546 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 575 (628)
++...+..|..+++|++|++++|++++.+|
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 885444446788888888888888887766
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.4e-30 Score=256.70 Aligned_cols=190 Identities=21% Similarity=0.238 Sum_probs=125.5
Q ss_pred hccCCcCeeeeccccccccCC-cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccc-ccCCcccCCcch
Q 042887 383 KNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG-NVPSSLGNCQNL 460 (628)
Q Consensus 383 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 460 (628)
..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 334444444444444443332 345556666666666666666666666666667777777776664 456666666666
Q ss_pred hcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCC-CCCEE
Q 042887 461 MTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK-SIKEL 539 (628)
Q Consensus 461 ~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L 539 (628)
+.|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..++ +|++|
T Consensus 178 ----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 178 ----TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp ----CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred ----CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 6677777777766677777777888888888888766666777788888888888888877777777774 78888
Q ss_pred ECCCCcccccCc--hhhhcccCCCeEeccCCcCcccCCC
Q 042887 540 DLSRNNLSGQIP--KYLENLLFLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 540 ~Ls~N~l~~~~~--~~~~~l~~L~~L~ls~N~l~~~~p~ 576 (628)
++++|++++..+ .....+...+.+.+..+.+.+..|.
T Consensus 254 ~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp ECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred EccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 888888875422 2233344455566666666665553
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=260.76 Aligned_cols=278 Identities=18% Similarity=0.162 Sum_probs=185.1
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~ 243 (628)
....|.++|+++. +|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 33 ~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3457888888874 555443 4888888888888877777888888888888888888877788888888888888888
Q ss_pred ccCcccCChhhhhCCCCCcEEecccCccccccc-ccccCCCCCCEEEcccc-cceeecccccccCCCCCEEEccCCcCCC
Q 042887 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKN-HFSGQVKIDFNRLSNLSRLFLSKNNLGT 321 (628)
Q Consensus 244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 321 (628)
|.++ .+|...+..+++|++|++++|+++...+ ..|.++++|++|++++| .++...+..|..+++|++|++++|.++.
T Consensus 110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 8888 6777766678888888888888885544 47888888888888888 4777777788888888888888888876
Q ss_pred cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccccc
Q 042887 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT 401 (628)
Q Consensus 322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 401 (628)
.. +..+..+++|+.|++++|.++......+.... +++.|++++|.+++..+..+..
T Consensus 189 ~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~----------------- 244 (353)
T 2z80_A 189 YE------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELRDTDLDTFHFSELST----------------- 244 (353)
T ss_dssp EC------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTT-TEEEEEEESCBCTTCCCC---------------------
T ss_pred cC------HHHHhccccCCeecCCCCccccchhhhhhhcc-cccEEECCCCcccccccccccc-----------------
Confidence 43 23455667777777777776544333332232 5666666666555433322211
Q ss_pred CCcCCCCCCCCCeEecccCcccc----ccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc
Q 042887 402 IPHAIGELKNLQGLALVRNSLRG----TIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS 477 (628)
Q Consensus 402 ~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~ 477 (628)
......++.++++++.+.+ .+|..+..+++|++|++++|+++...+..+..+++| +.|++++|.+.+.
T Consensus 245 ----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L----~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 ----GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL----QKIWLHTNPWDCS 316 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC----CEEECCSSCBCCC
T ss_pred ----ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC----CEEEeeCCCccCc
Confidence 1122334444444444443 244555566666666666666653222224555555 5566666666543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1e-29 Score=254.03 Aligned_cols=263 Identities=22% Similarity=0.245 Sum_probs=146.9
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCccccc--ccccccCCCCCCEEEcccccceeecccccccCCCCCEE
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGS--LPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRL 312 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 312 (628)
+|++|++++|.++ .+|..++..+++|++|++++|+++.. .+..+..+++|++|++++|.++.. +..+..+++|++|
T Consensus 29 ~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l-~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE-EEEEETCTTCCEE
T ss_pred CCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC-hhhcCCCCCCCEE
Confidence 4444444444444 44444433444555555555544422 134444556666666666665532 3335555555555
Q ss_pred EccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeee
Q 042887 313 FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG 392 (628)
Q Consensus 313 ~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 392 (628)
++++|+++.... ...+..+++|++|+
T Consensus 107 ~l~~n~l~~~~~------------------------------------------------------~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 107 DFQHSNLKQMSE------------------------------------------------------FSVFLSLRNLIYLD 132 (306)
T ss_dssp ECTTSEEESSTT------------------------------------------------------TTTTTTCTTCCEEE
T ss_pred ECCCCccccccc------------------------------------------------------chhhhhccCCCEEE
Confidence 555555443211 01233344444444
Q ss_pred eccccccccCCcCCCCCCCCCeEecccCcccc-ccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCC
Q 042887 393 VEYNQLTGTIPHAIGELKNLQGLALVRNSLRG-TIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSG 471 (628)
Q Consensus 393 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~ 471 (628)
+++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++| +.|++++
T Consensus 133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~ 208 (306)
T 2z66_A 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL----QVLNMSH 208 (306)
T ss_dssp CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----CEEECTT
T ss_pred CCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC----CEEECCC
Confidence 44444444444555555556666666665554 355556666666666666666665556666666666 6666666
Q ss_pred CcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCC-CCCeEECcCceeeeecC--ccccCCCCCCEEECCCCcccc
Q 042887 472 NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT-TLEYLHLQGNSFSGSLP--LSLKTLKSIKELDLSRNNLSG 548 (628)
Q Consensus 472 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~ 548 (628)
|++++..+..+..+++|++|++++|++++..|..+..++ +|++|++++|++++.-+ .....+...+.+.+..+.+..
T Consensus 209 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C 288 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 288 (306)
T ss_dssp SCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBE
T ss_pred CccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhcccccccc
Confidence 666655555667777777777777777777777777763 77777777777764321 111223344455566677776
Q ss_pred cCchhhhcc
Q 042887 549 QIPKYLENL 557 (628)
Q Consensus 549 ~~~~~~~~l 557 (628)
..|+.+.+.
T Consensus 289 ~~p~~~~g~ 297 (306)
T 2z66_A 289 ATPSDKQGM 297 (306)
T ss_dssp EESGGGTTC
T ss_pred CCchhhCCc
Confidence 667666654
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=1.2e-29 Score=250.72 Aligned_cols=231 Identities=24% Similarity=0.219 Sum_probs=179.3
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCc-cccccCccccCCCCCCeEec
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNS-LRGTIPDTLGNLTLLNRLFL 441 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 441 (628)
+++.|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|. +++..|..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 56667777777776666777888888888888888887777788888888888888886 77666777888888888888
Q ss_pred CCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCce
Q 042887 442 GFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS 521 (628)
Q Consensus 442 ~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 521 (628)
++|++++..|..+.++++| +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 113 ~~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAAL----QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCEECHhHhhCCcCC----CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 8888887777777777777 778888888886666678888888888888888887666678888888888888888
Q ss_pred eeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCccc
Q 042887 522 FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLCGG 597 (628)
Q Consensus 522 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~ 597 (628)
+++..|..+..+++|+.|++++|++++..++.+..+++|++|++++|++.+..+.......++......+...|..
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 8877788888888888888888888877777788888888888888888876654333333444445556666653
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.3e-31 Score=291.60 Aligned_cols=403 Identities=12% Similarity=0.077 Sum_probs=289.6
Q ss_pred CcCcccEEEccCCccc---cccc------------hhhhCCCCCCEEecccCcCcccccccccCC--CCCCEeeccccc-
Q 042887 160 NLLKLEMIDVGDNQLI---GKFP------------DFIANFSALEAIDISANMLGGRIPDSLCQL--RSLNYLSISENN- 221 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~---~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~- 221 (628)
.+++|+.|+++++... +.+| .....+++|++|+|++|.+++..+..+... .+|++|+|++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 4567899999774321 1222 223378999999999998887777777664 459999999886
Q ss_pred Ccc-cCCcCccCCCCCCEEEeecccCcccCCh---hhhhCCCCCcEEecccCccc----ccccccccCCCCCCEEEcccc
Q 042887 222 FSC-KLPLSIWNISSLEIISLHSNRFEGSLPL---NIGFNIPNVNFLSVGQNNFT----GSLPHSFSNASNLQVLDVYKN 293 (628)
Q Consensus 222 i~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N 293 (628)
++. .++.....+++|++|+|++|.+++.-.. .+...+++|++|++++|.++ ...+..+.++++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 221 1222334789999999999988754221 23345899999999999987 344555678899999999999
Q ss_pred cceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCc
Q 042887 294 HFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQ 373 (628)
Q Consensus 294 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 373 (628)
.+.+ .+..+..+++|++|+++........ ......+..+++|+.++++++.. ...+..+...+ +|+.|++++|.
T Consensus 231 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~-~L~~L~Ls~~~ 304 (592)
T 3ogk_B 231 EILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAA-QIRKLDLLYAL 304 (592)
T ss_dssp BGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGG-GCCEEEETTCC
T ss_pred cHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHHhhccccccccCccccch-hHHHHHHhhcC-CCcEEecCCCc
Confidence 9886 4567888999999999864322111 12334567778999999887532 22333344444 89999999999
Q ss_pred ceeeCc-hhhhccCCcCeeeeccccccc-cCCcCCCCCCCCCeEecc-----------cCcccccc-CccccCCCCCCeE
Q 042887 374 ISGTIP-SEIKNLVNINAFGVEYNQLTG-TIPHAIGELKNLQGLALV-----------RNSLRGTI-PDTLGNLTLLNRL 439 (628)
Q Consensus 374 l~~~~~-~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~-----------~n~l~~~~-~~~~~~l~~L~~L 439 (628)
+++... ..+..+++|+.|+++ +.+.+ ..+..+..+++|++|+++ .|.+++.. +.....+++|++|
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 765433 346889999999998 44433 333444668899999999 36666432 2234568999999
Q ss_pred ecCCcccccccCCcccC-CcchhcccceEEcC----CCcCccc-----cchhhhccCCCCEeeCcCCc--CcccCCcccc
Q 042887 440 FLGFNNLQGNVPSSLGN-CQNLMTLSRLLDLS----GNLLGGS-----IPLEVGNLRNLAEFDLSENH--FSNEIPVTLS 507 (628)
Q Consensus 440 ~L~~N~l~~~~~~~~~~-l~~L~~l~~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~ 507 (628)
+++.|.+++..+..+.. +++| +.|+++ .|.+++. ++..+.++++|++|++++|. +++..+..+.
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L----~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNL----CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSC----CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred EeecCCccHHHHHHHHhhCCCC----cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 99999998777666665 7777 788885 7788753 33447779999999998644 6655444443
Q ss_pred -CCCCCCeEECcCceeee-ecCccccCCCCCCEEECCCCccccc-CchhhhcccCCCeEeccCCcCccc
Q 042887 508 -ACTTLEYLHLQGNSFSG-SLPLSLKTLKSIKELDLSRNNLSGQ-IPKYLENLLFLAYLNLSYNHFEGE 573 (628)
Q Consensus 508 -~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~ 573 (628)
.+++|++|++++|++++ .++..+.++++|++|++++|.+++. .+..+..+++|++|++++|+++..
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 48899999999999886 3455567889999999999998754 344567899999999999998764
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.6e-28 Score=257.57 Aligned_cols=249 Identities=21% Similarity=0.227 Sum_probs=190.2
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL 314 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 314 (628)
....++.+++.++ .+|..+ .+++++|+|++|++++..+..|.++++|++|++++|+++++.+..|.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3567888888887 677655 367788888888888777777888888888888888887777777777777777777
Q ss_pred cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394 (628)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 394 (628)
++|+++. ..+..+..+++|++|+++
T Consensus 131 ~~n~l~~-------------------------------------------------------~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 131 FDNWLTV-------------------------------------------------------IPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp CSSCCSB-------------------------------------------------------CCTTTSSSCTTCCEEECC
T ss_pred CCCcCCc-------------------------------------------------------cChhhhcccCCCCEEECC
Confidence 7766543 223446677888899999
Q ss_pred cccccccCCcCCCCCCCCCeEeccc-CccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887 395 YNQLTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL 473 (628)
Q Consensus 395 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~ 473 (628)
+|++.+..+..|..+++|+.|++++ |.+....+..|..+++|++|++++|++++. | .+..+++| +.|++++|+
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L----~~L~Ls~N~ 229 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGL----EELEMSGNH 229 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTC----CEEECTTSC
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccc----cEEECcCCc
Confidence 9998877777888899999999988 555555555688888888888888888743 3 35666666 778888888
Q ss_pred CccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccc
Q 042887 474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG 548 (628)
Q Consensus 474 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 548 (628)
+++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++..
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 887777778888888888888888887777778888888888888888876666677778888888888887763
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.5e-29 Score=246.61 Aligned_cols=252 Identities=22% Similarity=0.213 Sum_probs=134.1
Q ss_pred CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887 237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK 316 (628)
Q Consensus 237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 316 (628)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666665 555433 35666666666666655555666666666666666666665555566666666666655
Q ss_pred Cc-CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecc
Q 042887 317 NN-LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEY 395 (628)
Q Consensus 317 n~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 395 (628)
|. ++.+ .+..+..+++|++|++++
T Consensus 90 n~~l~~~-------------------------------------------------------~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 90 NAQLRSV-------------------------------------------------------DPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp CTTCCCC-------------------------------------------------------CTTTTTTCTTCCEEECTT
T ss_pred CCCcccc-------------------------------------------------------CHHHhcCCcCCCEEECCC
Confidence 54 3221 122233334444444444
Q ss_pred ccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCc
Q 042887 396 NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLG 475 (628)
Q Consensus 396 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~ 475 (628)
|.+.+..+..+..+++|++|++++|++++..+..|..+++|+ .|++++|+++
T Consensus 115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----------------------------~L~l~~n~l~ 166 (285)
T 1ozn_A 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT----------------------------HLFLHGNRIS 166 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC----------------------------EEECCSSCCC
T ss_pred CcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc----------------------------EEECCCCccc
Confidence 444433344444444444444444444433333334444444 4444444444
Q ss_pred cccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhh
Q 042887 476 GSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLE 555 (628)
Q Consensus 476 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 555 (628)
+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....+.. .
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~ 245 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-P 245 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-H
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-H
Confidence 333334555556666666666666555566666666666666666666544455666666666666666665432211 1
Q ss_pred cccCCCeEeccCCcCcccCCC
Q 042887 556 NLLFLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 556 ~l~~L~~L~ls~N~l~~~~p~ 576 (628)
-...++.+..+.|.+.+..|.
T Consensus 246 ~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 246 LWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHHHHCCSEECCCBEEESG
T ss_pred HHHHHHhcccccCccccCCch
Confidence 112344455666777666664
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.5e-28 Score=255.67 Aligned_cols=248 Identities=21% Similarity=0.244 Sum_probs=184.5
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEc
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFL 314 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 314 (628)
....++.+++.++ .+|..+ .++++.|+|++|+++...+..|.++++|++|+|++|+++.+.+..|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567888888887 777765 367788888888888777777888888888888888887777777777777777777
Q ss_pred cCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeec
Q 042887 315 SKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVE 394 (628)
Q Consensus 315 ~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 394 (628)
++|+++. ..+..|..+++|+.|+++
T Consensus 120 ~~n~l~~-------------------------------------------------------~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 120 FDNRLTT-------------------------------------------------------IPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp CSSCCSS-------------------------------------------------------CCTTTSCSCSSCCEEECC
T ss_pred CCCcCCe-------------------------------------------------------eCHhHhhccccCceeeCC
Confidence 7776643 222346677888888888
Q ss_pred cccccccCCcCCCCCCCCCeEeccc-CccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCc
Q 042887 395 YNQLTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNL 473 (628)
Q Consensus 395 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~ 473 (628)
+|.+.+..+..|..+++|++|++++ |.+....+..|..+++|++|++++|+++ .+| .+..+++| +.|+|++|+
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L----~~L~Ls~N~ 218 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL----DELDLSGNH 218 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC----CEEECTTSC
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc----CEEECCCCc
Confidence 8888877777888888888888888 4555455556788888888888888887 333 35556666 677777777
Q ss_pred CccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 474 LGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 474 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
+++..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77766777777777777777777777777777777777777777777777666666777777777777777765
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=255.45 Aligned_cols=249 Identities=22% Similarity=0.287 Sum_probs=212.6
Q ss_pred CCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEc
Q 042887 211 SLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDV 290 (628)
Q Consensus 211 ~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 290 (628)
..+.++.+++.++ .+|..+. +++++|+|++|.++ .++...+..+++|++|+|++|+++...+..|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4678999999988 5776664 68999999999998 565555667999999999999999888889999999999999
Q ss_pred ccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEcc
Q 042887 291 YKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMG 370 (628)
Q Consensus 291 ~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 370 (628)
++|+++.+.+..|..+++|++|++++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------------------------------- 150 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------------------------------- 150 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-------------------------------------------------
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccc-------------------------------------------------
Confidence 9999998887788888888888888876643
Q ss_pred CCcceeeCchhhhccCCcCeeeecc-ccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccc
Q 042887 371 DNQISGTIPSEIKNLVNINAFGVEY-NQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN 449 (628)
Q Consensus 371 ~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 449 (628)
..+..|..+++|+.|++++ +.+....+..|..+++|++|++++|.++. +| .+..+++|+.|++++|++++.
T Consensus 151 ------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 151 ------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp ------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEE
T ss_pred ------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCcc
Confidence 2234567788899999998 45555556689999999999999999984 45 488899999999999999988
Q ss_pred cCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeee
Q 042887 450 VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSG 524 (628)
Q Consensus 450 ~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 524 (628)
.|..|.++++| +.|++++|++++..+..|.++++|++|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus 223 ~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 223 RPGSFQGLMHL----QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTTTTTCTTC----CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ChhhhccCccC----CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 89999999988 889999999998888899999999999999999998888888999999999999999873
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.6e-28 Score=256.49 Aligned_cols=247 Identities=20% Similarity=0.192 Sum_probs=198.0
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~ 243 (628)
...++.+++.++. +|..+. +++++|+|++|+++++.+..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4678888888874 555443 6899999999999988888999999999999999999988888899999999999999
Q ss_pred ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccc-ccceeecccccccCCCCCEEEccCCcCCCc
Q 042887 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYK-NHFSGQVKIDFNRLSNLSRLFLSKNNLGTE 322 (628)
Q Consensus 244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 322 (628)
|.++ .+|...+..+++|++|+|++|+++...+..|.++++|++|++++ |.+..+.+..|..+++|++|++++|+++.+
T Consensus 133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9998 67777677799999999999999977777899999999999998 566766677788999999999999988754
Q ss_pred CCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccC
Q 042887 323 STSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTI 402 (628)
Q Consensus 323 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 402 (628)
+ .+..+++| +.|++++|.+++..|..|.++++|+.|++++|++.+..
T Consensus 212 ~--------~~~~l~~L-------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 212 P--------NLTPLVGL-------------------------EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp C--------CCTTCTTC-------------------------CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred c--------cccccccc-------------------------cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 2 23344444 44555555555566677777788888888888888777
Q ss_pred CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccc
Q 042887 403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQ 447 (628)
Q Consensus 403 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 447 (628)
+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 778888888888888888888777777778888888888888776
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=5.1e-30 Score=257.23 Aligned_cols=266 Identities=17% Similarity=0.192 Sum_probs=161.9
Q ss_pred EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317 (628)
Q Consensus 238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n 317 (628)
..+++.+.+. ..+..++..+++|++|++++|++++..|..|+++++|++|++++|++++..+ |..+++|++|++++|
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 3444455444 3344444445566666666666666555666666666666666666665443 566666666666666
Q ss_pred cCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccc
Q 042887 318 NLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ 397 (628)
Q Consensus 318 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 397 (628)
.+++++ ..++|+.|+ +++|.+++..+. .+
T Consensus 91 ~l~~l~-----------~~~~L~~L~-------------------------l~~n~l~~~~~~---~~------------ 119 (317)
T 3o53_A 91 YVQELL-----------VGPSIETLH-------------------------AANNNISRVSCS---RG------------ 119 (317)
T ss_dssp EEEEEE-----------ECTTCCEEE-------------------------CCSSCCSEEEEC---CC------------
T ss_pred cccccc-----------CCCCcCEEE-------------------------CCCCccCCcCcc---cc------------
Confidence 554311 112233333 333332222111 12
Q ss_pred ccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCccc-CCcchhcccceEEcCCCcCcc
Q 042887 398 LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLSRLLDLSGNLLGG 476 (628)
Q Consensus 398 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls~N~l~~ 476 (628)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++| +.|++++|++++
T Consensus 120 ------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L----~~L~L~~N~l~~ 183 (317)
T 3o53_A 120 ------------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----EHLNLQYNFIYD 183 (317)
T ss_dssp ------------SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC----CEEECTTSCCCE
T ss_pred ------------CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC----CEEECCCCcCcc
Confidence 3344444444444444444444455555555555555544443332 34444 555666666654
Q ss_pred ccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc-ccCchhhh
Q 042887 477 SIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS-GQIPKYLE 555 (628)
Q Consensus 477 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~ 555 (628)
. + ....+++|++|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ +..|.++.
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 184 V-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred c-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 3 2 222477888888888888854 445888899999999999998 56778889999999999999998 77888999
Q ss_pred cccCCCeEeccC-CcCcccCCCC
Q 042887 556 NLLFLAYLNLSY-NHFEGEVPRK 577 (628)
Q Consensus 556 ~l~~L~~L~ls~-N~l~~~~p~~ 577 (628)
.+++|+.+++++ +.++|..|..
T Consensus 260 ~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 260 KNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp TCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ccccceEEECCCchhccCCchhc
Confidence 999999999994 4566665543
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.6e-31 Score=287.06 Aligned_cols=396 Identities=17% Similarity=0.113 Sum_probs=292.5
Q ss_pred CcCcccEEEccCCccccccchhhhCC--CCCCEEecccCc-Ccc-cccccccCCCCCCEeecccccCcccC----CcCcc
Q 042887 160 NLLKLEMIDVGDNQLIGKFPDFIANF--SALEAIDISANM-LGG-RIPDSLCQLRSLNYLSISENNFSCKL----PLSIW 231 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~----p~~~~ 231 (628)
++++|++|+|++|.+++..+..+... .+|++|+|++|. ++. ..+.....+++|++|+|++|.+++.. +..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 57889999999999988777777764 459999999987 221 12233457899999999999987653 33456
Q ss_pred CCCCCCEEEeecccCcc----cCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccce---eecccccc
Q 042887 232 NISSLEIISLHSNRFEG----SLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFS---GQVKIDFN 304 (628)
Q Consensus 232 ~l~~L~~L~L~~n~l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---~~~~~~~~ 304 (628)
.+++|++|++++|.+++ .++. ++..+++|+.|++++|.+.+ .+..+.++++|++|++++.... ......+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 78999999999999972 2222 23358999999999999985 6788999999999999864332 12334567
Q ss_pred cCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhc
Q 042887 305 RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKN 384 (628)
Q Consensus 305 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 384 (628)
.+++|+.|+++++... ..+..+..+++|+.|++++|.+++.....+....++|+.|+++++...+.++.....
T Consensus 268 ~~~~L~~L~l~~~~~~-------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~ 340 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQY 340 (592)
T ss_dssp CCTTCCEEEETTCCTT-------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHH
T ss_pred ccccccccCccccchh-------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHh
Confidence 7899999999886433 234456678899999999999876655443333348999999944333334445578
Q ss_pred cCCcCeeeecc-----------ccccccC-CcCCCCCCCCCeEecccCccccccCccccC-CCCCCeEecC----Ccccc
Q 042887 385 LVNINAFGVEY-----------NQLTGTI-PHAIGELKNLQGLALVRNSLRGTIPDTLGN-LTLLNRLFLG----FNNLQ 447 (628)
Q Consensus 385 l~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~N~l~ 447 (628)
+++|+.|++++ |.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 89999999993 5665432 222445899999999999998877777765 8999999996 67777
Q ss_pred cc-----cCCcccCCcchhcccceEEcCCCc--Cccccchhhhc-cCCCCEeeCcCCcCccc-CCccccCCCCCCeEECc
Q 042887 448 GN-----VPSSLGNCQNLMTLSRLLDLSGNL--LGGSIPLEVGN-LRNLAEFDLSENHFSNE-IPVTLSACTTLEYLHLQ 518 (628)
Q Consensus 448 ~~-----~~~~~~~l~~L~~l~~~L~Ls~N~--l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls 518 (628)
+. .+..+.++++| +.|++++|. +++..+..+.. +++|++|++++|++++. .+..+.++++|++|+++
T Consensus 421 ~~p~~~~~~~~~~~~~~L----~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKL----RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCCHHHHHHHHHHCTTC----CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred CchHHHHHHHHHHhCCCC----CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 43 23335667777 889997644 66555555544 89999999999999863 45556789999999999
Q ss_pred Cceeeee-cCccccCCCCCCEEECCCCcccccCchhh-hcccCCCeEeccCC
Q 042887 519 GNSFSGS-LPLSLKTLKSIKELDLSRNNLSGQIPKYL-ENLLFLAYLNLSYN 568 (628)
Q Consensus 519 ~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N 568 (628)
+|.+++. ++.....+++|++|++++|+++......+ ..++.+....+..+
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9998754 34445678999999999999986544433 35666666655554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.8e-29 Score=253.16 Aligned_cols=260 Identities=19% Similarity=0.198 Sum_probs=174.8
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
..++..+++.+.+....+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 346777888888877777777788889999999999988878888999999999999998886544 888888888888
Q ss_pred ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321 (628)
Q Consensus 242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 321 (628)
++|.++ .++. .++|++|++++|++++..+.. +++|++|++++|++++..+..|..+++|++|++++|.++.
T Consensus 88 s~n~l~-~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQ-ELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEE-EEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCccc-cccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 888887 3431 467777777777777554433 4566777777777766656566666666666666665543
Q ss_pred cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhh-hccCCcCeeeeccccccc
Q 042887 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEI-KNLVNINAFGVEYNQLTG 400 (628)
Q Consensus 322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~ 400 (628)
..+..+ ..+++|++|++++|.+++
T Consensus 159 -------------------------------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 159 -------------------------------------------------------VNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp -------------------------------------------------------EEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred -------------------------------------------------------ccHHHHhhccCcCCEEECCCCcCcc
Confidence 112222 234555555555555554
Q ss_pred cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCc-cccc
Q 042887 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLG-GSIP 479 (628)
Q Consensus 401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~-~~~~ 479 (628)
.. ....+++|++|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++| +.|++++|.+. +..+
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L----~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 184 VK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL----EHFDLRGNGFHCGTLR 255 (317)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTC----CEEECTTCCCBHHHHH
T ss_pred cc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCC----CEEEccCCCccCcCHH
Confidence 31 122366777777777777643 334666777777777777776 345556666666 66677777666 4555
Q ss_pred hhhhccCCCCEeeCcC
Q 042887 480 LEVGNLRNLAEFDLSE 495 (628)
Q Consensus 480 ~~~~~l~~L~~L~Ls~ 495 (628)
..+..+++|+.|++++
T Consensus 256 ~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHhccccceEEECCC
Confidence 6666666666666663
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.3e-28 Score=244.78 Aligned_cols=234 Identities=19% Similarity=0.206 Sum_probs=153.2
Q ss_pred cCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887 161 LLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS 240 (628)
Q Consensus 161 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~ 240 (628)
..+++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888999999988 66777888889999999999888 77888888899999999999888 6788888888999999
Q ss_pred eecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCC
Q 042887 241 LHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLG 320 (628)
Q Consensus 241 L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~ 320 (628)
+++|.+.+.+|..+.. . ..+..|.++++|++|++++|+++ ..|..+..+++|++|++++|.++
T Consensus 157 L~~n~~~~~~p~~~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 9988877777765532 0 11223455666666666666666 34455666666666666666554
Q ss_pred CcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccc
Q 042887 321 TESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTG 400 (628)
Q Consensus 321 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 400 (628)
.++ ..+..+++|+.|+++ +|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus 220 ~l~-------~~l~~l~~L~~L~Ls-------------------------~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 220 ALG-------PAIHHLPKLEELDLR-------------------------GCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp CCC-------GGGGGCTTCCEEECT-------------------------TCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred cCc-------hhhccCCCCCEEECc-------------------------CCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 321 112222222222222 222223344455556666666666666665
Q ss_pred cCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccc
Q 042887 401 TIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL 446 (628)
Q Consensus 401 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 446 (628)
.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 268 ~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666666666666666666666666666666666666666665544
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=4.3e-27 Score=254.38 Aligned_cols=109 Identities=28% Similarity=0.337 Sum_probs=74.3
Q ss_pred CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCC
Q 042887 434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLE 513 (628)
Q Consensus 434 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 513 (628)
++|+.|++++|.++ .+|.. +++| +.|++++|++++ +| ..+++|++|++++|+++. +|. .+++|+
T Consensus 201 ~~L~~L~L~~N~l~-~l~~~---~~~L----~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~ 264 (622)
T 3g06_A 201 SELYKLWAYNNRLT-SLPAL---PSGL----KELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLL 264 (622)
T ss_dssp TTCCEEECCSSCCS-SCCCC---CTTC----CEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred chhhEEECcCCccc-ccCCC---CCCC----CEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCc
Confidence 34555555555554 22221 1333 566677776664 33 345778888888888873 444 567888
Q ss_pred eEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccC
Q 042887 514 YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLF 559 (628)
Q Consensus 514 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 559 (628)
.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..+..++.
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 8888888888 67778888888888888888888888887776653
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.7e-28 Score=241.35 Aligned_cols=201 Identities=20% Similarity=0.337 Sum_probs=133.2
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCcccc---------CC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLG---------NL 433 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------~l 433 (628)
+|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+. .+
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 3444444444444 44455555666666666666665 4455566666666666666555555555443 36
Q ss_pred CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCC
Q 042887 434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLE 513 (628)
Q Consensus 434 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 513 (628)
++|++|++++|+++ .+|..+..+++| +.|++++|++++ +|..+..+++|++|++++|++.+.+|..+..+++|+
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~l~~l~~L----~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPASIANLQNL----KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGGGGGCTTC----CEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred CCCCEEECcCCCcC-cchHhhcCCCCC----CEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 77777777777776 566666666666 667777777774 455677777777777777777777777777777777
Q ss_pred eEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCc
Q 042887 514 YLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571 (628)
Q Consensus 514 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 571 (628)
+|++++|.+.+.+|..+..+++|++|+|++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777777777777777777777777777777777777777777777777777766543
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.3e-26 Score=250.75 Aligned_cols=142 Identities=26% Similarity=0.302 Sum_probs=110.2
Q ss_pred CCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCC
Q 042887 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA 489 (628)
Q Consensus 410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~ 489 (628)
++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|.. .++| +.|++++|.++. +|. .+++|+
T Consensus 161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L----~~L~L~~N~l~~-l~~---~~~~L~ 224 (622)
T 3g06_A 161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSEL----YKLWAYNNRLTS-LPA---LPSGLK 224 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTC----CEEECCSSCCSS-CCC---CCTTCC
T ss_pred CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchh----hEEECcCCcccc-cCC---CCCCCC
Confidence 345566666666653 33 335677777777777763 3332 2455 789999999984 443 358899
Q ss_pred EeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCc
Q 042887 490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNH 569 (628)
Q Consensus 490 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~ 569 (628)
+|++++|++++ +| ..+++|+.|++++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 99999999995 55 45689999999999999 5665 6789999999999999 678889999999999999999
Q ss_pred CcccCCC
Q 042887 570 FEGEVPR 576 (628)
Q Consensus 570 l~~~~p~ 576 (628)
+++.+|.
T Consensus 296 l~~~~~~ 302 (622)
T 3g06_A 296 LSERTLQ 302 (622)
T ss_dssp CCHHHHH
T ss_pred CCCcCHH
Confidence 9987664
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=6.4e-29 Score=248.60 Aligned_cols=252 Identities=18% Similarity=0.186 Sum_probs=161.1
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCc-cccccccc-------CCCCCCEeecccccCcccCCcC
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLG-GRIPDSLC-------QLRSLNYLSISENNFSCKLPLS 229 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~N~i~~~~p~~ 229 (628)
.+..++|+.|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. .+++|++|+|++|.+++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34567788889999988 567666554 888888888884 34555554 7888899999998888777877
Q ss_pred c--cCCCCCCEEEeecccCcccCChhhhhCC-----CCCcEEecccCcccccccccccCCCCCCEEEcccccceeec--c
Q 042887 230 I--WNISSLEIISLHSNRFEGSLPLNIGFNI-----PNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV--K 300 (628)
Q Consensus 230 ~--~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~--~ 300 (628)
+ ..+++|++|++++|.+++. |..+.. + ++|++|++++|++++..|..|+++++|++|++++|++.+.. +
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 6 7888888888888888844 655443 4 77888888888877777677777777777777777765431 1
Q ss_pred cc--cccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeC
Q 042887 301 ID--FNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTI 378 (628)
Q Consensus 301 ~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 378 (628)
.. +..+++|++|++++|+++.++ . ..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~------------------------------~----------------------~~ 220 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPS------------------------------G----------------------VC 220 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHH------------------------------H----------------------HH
T ss_pred HHHHhccCCCCCEEECCCCcCcchH------------------------------H----------------------HH
Confidence 22 255666666666666554211 0 00
Q ss_pred chhhhccCCcCeeeeccccccccCC-cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCC
Q 042887 379 PSEIKNLVNINAFGVEYNQLTGTIP-HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNC 457 (628)
Q Consensus 379 ~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 457 (628)
...+..+++|+.|++++|++.+..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+
T Consensus 221 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l 295 (312)
T 1wwl_A 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDEL 295 (312)
T ss_dssp HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTS
T ss_pred HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhC
Confidence 1122344555555555555554442 33444556666666666665 4444444 5666666666666544 43 5555
Q ss_pred cchhcccceEEcCCCcCcc
Q 042887 458 QNLMTLSRLLDLSGNLLGG 476 (628)
Q Consensus 458 ~~L~~l~~~L~Ls~N~l~~ 476 (628)
++| +.|++++|.+++
T Consensus 296 ~~L----~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 PQV----GNLSLKGNPFLD 310 (312)
T ss_dssp CEE----EEEECTTCTTTC
T ss_pred CCC----CEEeccCCCCCC
Confidence 555 566666666653
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.9e-28 Score=243.82 Aligned_cols=242 Identities=23% Similarity=0.230 Sum_probs=140.8
Q ss_pred CCceeecccCCcccccchHHHhccccccEEEccCCcce-eeCchhhh-------ccCCcCeeeeccccccccCCcCC--C
Q 042887 338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQIS-GTIPSEIK-------NLVNINAFGVEYNQLTGTIPHAI--G 407 (628)
Q Consensus 338 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~~--~ 407 (628)
+|+.+++++|.+ ..+..+.. .++.|++++|.+. ..+|..+. ++++|++|++++|++.+..|..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 444445555544 22333332 2455555555552 23444333 56666666666666666566554 6
Q ss_pred CCCCCCeEecccCccccccCccccCC-----CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc--cch
Q 042887 408 ELKNLQGLALVRNSLRGTIPDTLGNL-----TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS--IPL 480 (628)
Q Consensus 408 ~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~--~~~ 480 (628)
.+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++.+++| +.|++++|++.+. .+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL----STLDLSDNPELGERGLIS 193 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC----CEEECCSCTTCHHHHHHH
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC----CEEECCCCCcCcchHHHH
Confidence 666666666666666655 5555555 666666666666666666666666666 6666666665543 222
Q ss_pred hh--hccCCCCEeeCcCCcCcc---cCCccccCCCCCCeEECcCceeeeecC-ccccCCCCCCEEECCCCcccccCchhh
Q 042887 481 EV--GNLRNLAEFDLSENHFSN---EIPVTLSACTTLEYLHLQGNSFSGSLP-LSLKTLKSIKELDLSRNNLSGQIPKYL 554 (628)
Q Consensus 481 ~~--~~l~~L~~L~Ls~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 554 (628)
.+ ..+++|++|++++|++++ .....+..+++|++|++++|++++..| ..+..+++|++|+|++|+|+ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 566666777777766662 112233456666777777776665443 34455666777777777666 445444
Q ss_pred hcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCC
Q 042887 555 ENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNER 593 (628)
Q Consensus 555 ~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~ 593 (628)
. ++|++||+++|++++. |....+++++.+++++|+.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred c--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 3 5666677777766655 4455556666666666653
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.4e-29 Score=277.58 Aligned_cols=398 Identities=17% Similarity=0.157 Sum_probs=263.4
Q ss_pred CcCcccEEEccCCccccccchhhh-CCCCCCEEecccC-cCccc-ccccccCCCCCCEeecccccCcccCCcCcc----C
Q 042887 160 NLLKLEMIDVGDNQLIGKFPDFIA-NFSALEAIDISAN-MLGGR-IPDSLCQLRSLNYLSISENNFSCKLPLSIW----N 232 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~----~ 232 (628)
.+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 467899999999998887777776 6899999999988 55432 344455789999999999988765544443 6
Q ss_pred CCCCCEEEeeccc--CcccCChhhhhCCCCCcEEecccC-cccccccccccCCCCCCEEEccc-------ccceeecccc
Q 042887 233 ISSLEIISLHSNR--FEGSLPLNIGFNIPNVNFLSVGQN-NFTGSLPHSFSNASNLQVLDVYK-------NHFSGQVKID 302 (628)
Q Consensus 233 l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-------N~i~~~~~~~ 302 (628)
+++|++|++++|. +.......+...+++|++|++++| .++ ..+..+..+++|++|+++. +.+.+.. ..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS-VA 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH-HH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHH-HH
Confidence 7799999999887 221111222234799999999988 444 4777788899999998544 3444433 36
Q ss_pred cccCCCCCEE-EccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceee-Cch
Q 042887 303 FNRLSNLSRL-FLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGT-IPS 380 (628)
Q Consensus 303 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~ 380 (628)
+.++++|+.| .+...... .....+..+++|+.|++++|.+++.....+....++|+.|++++| +.+. ++.
T Consensus 261 l~~~~~L~~Ls~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPA-------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHTCTTCCEEECCBTCCGG-------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HhcCCCcccccCCcccchh-------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 7788888888 33332211 122233456789999999888765544443333348888888887 4322 222
Q ss_pred hhhccCCcCeeeecc---------ccccccCCcCCC-CCCCCCeEecccCccccccCcccc-CCCCCCeEecC--C----
Q 042887 381 EIKNLVNINAFGVEY---------NQLTGTIPHAIG-ELKNLQGLALVRNSLRGTIPDTLG-NLTLLNRLFLG--F---- 443 (628)
Q Consensus 381 ~l~~l~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~---- 443 (628)
....+++|+.|++.. +.+++.....+. .+++|+.|+++.|.+++..+..+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 334578888888833 344432222222 367888888888888765555554 47888888888 3
Q ss_pred cccccc-----cCCcccCCcchhcccceEEcCCCcCccccchhhhc-cCCCCEeeCcCCcCcccCCccc-cCCCCCCeEE
Q 042887 444 NNLQGN-----VPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGN-LRNLAEFDLSENHFSNEIPVTL-SACTTLEYLH 516 (628)
Q Consensus 444 N~l~~~-----~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ 516 (628)
|.+++. .+..+..+++| +.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ .++++|++|+
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L----~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDL----RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTC----CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred ccccCCchhhHHHHHHhhCCCc----cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 455421 11124455666 7788877 666555555554 7888888888888876544444 5678888888
Q ss_pred CcCceeeeecCc-cccCCCCCCEEECCCCcccccCchhh-hcccCCCeEeccCCcCcc
Q 042887 517 LQGNSFSGSLPL-SLKTLKSIKELDLSRNNLSGQIPKYL-ENLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 517 Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~ls~N~l~~ 572 (628)
+++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.-..
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 888888644333 34457888888888888864444444 456777666666654433
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-27 Score=251.31 Aligned_cols=235 Identities=17% Similarity=0.190 Sum_probs=143.4
Q ss_pred CCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccccCCCC
Q 042887 259 PNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQ 338 (628)
Q Consensus 259 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~ 338 (628)
++|+.|+|++|.+++..|..|+++++|++|+|++|.+++..+ |..+++|++|++++|.+++++ ..++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----------~~~~ 100 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----------VGPS 100 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----------ECTT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----------CCCC
Confidence 366677777777666666667777777777777777765544 666666666666666554311 0122
Q ss_pred CceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecc
Q 042887 339 MEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALV 418 (628)
Q Consensus 339 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 418 (628)
|+.|+ +++|.+.+..+. .+++|+.|+++
T Consensus 101 -------------------------L~~L~------------------------L~~N~l~~~~~~---~l~~L~~L~L~ 128 (487)
T 3oja_A 101 -------------------------IETLH------------------------AANNNISRVSCS---RGQGKKNIYLA 128 (487)
T ss_dssp -------------------------CCEEE------------------------CCSSCCCCEEEC---CCSSCEEEECC
T ss_pred -------------------------cCEEE------------------------CcCCcCCCCCcc---ccCCCCEEECC
Confidence 22333 333333222221 12345555555
Q ss_pred cCccccccCccccCCCCCCeEecCCcccccccCCccc-CCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCc
Q 042887 419 RNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH 497 (628)
Q Consensus 419 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 497 (628)
+|.+++..|..+..+++|+.|++++|.+++..|..+. .+++| +.|+|++|.+++..+ ...+++|++|+|++|.
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L----~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL----EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC----CEEECTTSCCCEEEC--CCCCTTCCEEECCSSC
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc----cEEecCCCccccccc--cccCCCCCEEECCCCC
Confidence 5555554455555555555555555555554444443 34444 555666666654322 2346778888888888
Q ss_pred CcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc-ccCchhhhcccCCCeEecc
Q 042887 498 FSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS-GQIPKYLENLLFLAYLNLS 566 (628)
Q Consensus 498 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ls 566 (628)
+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.++..++.|+.++++
T Consensus 203 l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 203 LAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 875443 47777888888888888874 6667788888888888888887 5667778888888877776
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-27 Score=250.80 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=179.2
Q ss_pred CCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEe
Q 042887 337 SQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLA 416 (628)
Q Consensus 337 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 416 (628)
++|+.|++++|.+++..+..+..+. +|+.|++++|.+++..| +..+++|+.|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3566666666666666555665555 67777777777776655 7788888888888888875432 27888899
Q ss_pred cccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhh-ccCCCCEeeCcC
Q 042887 417 LVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG-NLRNLAEFDLSE 495 (628)
Q Consensus 417 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~ 495 (628)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++| +.|+|++|.+++..|..+. .+++|++|+|++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV----QYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE----EEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC----CEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 999888866554 35788888999998888888888888887 7888999988887777775 688899999999
Q ss_pred CcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCc-ccC
Q 042887 496 NHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFE-GEV 574 (628)
Q Consensus 496 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~-~~~ 574 (628)
|.+++..+ ...+++|++|+|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred Cccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence 98886532 33578889999999988854 4458888889999999998885 6667888888889999988887 333
Q ss_pred CC-CCCCCCCCccccc-------CCCCCccc
Q 042887 575 PR-KGVFGNRTGIHLI-------GNERLCGG 597 (628)
Q Consensus 575 p~-~~~~~~l~~~~~~-------~n~~~c~~ 597 (628)
|. ...++.+..+++. +++..|..
T Consensus 255 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~ 285 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285 (487)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred HHHHHhCCCCcEEeccccccccCCCcccccC
Confidence 32 2334444555554 66666654
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.1e-28 Score=270.44 Aligned_cols=403 Identities=11% Similarity=0.104 Sum_probs=282.2
Q ss_pred CcCcccEEEccCCcccc---cc------------chhhhCCCCCCEEecccCcCccccccccc-CCCCCCEeecccc-cC
Q 042887 160 NLLKLEMIDVGDNQLIG---KF------------PDFIANFSALEAIDISANMLGGRIPDSLC-QLRSLNYLSISEN-NF 222 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~~---~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N-~i 222 (628)
.+++|+.|+++++.... .. +.....+++|++|+|++|.+++..+..+. .+++|++|+|++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 45678999999875321 11 22345788999999999999877777775 6899999999999 55
Q ss_pred ccc-CCcCccCCCCCCEEEeecccCcccCChhh---hhCCCCCcEEecccCc--ccc-cccccccCCCCCCEEEcccc-c
Q 042887 223 SCK-LPLSIWNISSLEIISLHSNRFEGSLPLNI---GFNIPNVNFLSVGQNN--FTG-SLPHSFSNASNLQVLDVYKN-H 294 (628)
Q Consensus 223 ~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~N~--l~~-~~~~~~~~l~~L~~L~L~~N-~ 294 (628)
+.. ++..+.++++|++|++++|.+++..+..+ ...+++|+.|++++|. ++. ..+..+..+++|++|++++| .
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 532 34445589999999999999875443322 2247799999999997 321 12222356799999999998 4
Q ss_pred ceeecccccccCCCCCEEEccCCcCCCcCCCCc-cccccccCCCCCcee-ecccCCcccccchHHHhccccccEEEccCC
Q 042887 295 FSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDL-DFLTLLTNCSQMEML-YLNTNKFGGVFLRSIANLSAKITVIGMGDN 372 (628)
Q Consensus 295 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~l~~~~~L~~L-~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 372 (628)
+.+ .+..+..+++|++|+++.+...- ....+ .....+.++++|+.+ .+..... ...+..+... ++|+.|++++|
T Consensus 224 ~~~-l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~-~~L~~L~L~~~ 299 (594)
T 2p1m_B 224 LEK-LATLLQRAPQLEELGTGGYTAEV-RPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVC-SRLTTLNLSYA 299 (594)
T ss_dssp HHH-HHHHHHHCTTCSEEECSBCCCCC-CHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHH-TTCCEEECTTC
T ss_pred HHH-HHHHHhcCCcceEcccccccCcc-chhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhh-CCCCEEEccCC
Confidence 444 66678889999999977654210 00000 122356788899988 4443322 1222222233 48999999999
Q ss_pred cceeeCc-hhhhccCCcCeeeecccccccc-CCcCCCCCCCCCeEecc---------cCccccccCcccc-CCCCCCeEe
Q 042887 373 QISGTIP-SEIKNLVNINAFGVEYNQLTGT-IPHAIGELKNLQGLALV---------RNSLRGTIPDTLG-NLTLLNRLF 440 (628)
Q Consensus 373 ~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~---------~n~l~~~~~~~~~-~l~~L~~L~ 440 (628)
.+++... ..+..+++|+.|++++| +.+. .+.....+++|++|+++ .+.+++.....+. .+++|+.|.
T Consensus 300 ~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 300 TVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 9775432 23568899999999988 4432 22223357899999994 3556544333333 489999999
Q ss_pred cCCcccccccCCccc-CCcchhcccceEEcC--C----CcCccc-----cchhhhccCCCCEeeCcCCcCcccCCccccC
Q 042887 441 LGFNNLQGNVPSSLG-NCQNLMTLSRLLDLS--G----NLLGGS-----IPLEVGNLRNLAEFDLSENHFSNEIPVTLSA 508 (628)
Q Consensus 441 L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls--~----N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 508 (628)
++.|.+++..+..+. .+++| +.|+++ + |.+++. ++..+..+++|++|++++ .+++..+..+..
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L----~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNM----TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTC----CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred HhcCCcCHHHHHHHHhhCCCc----ceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence 999999876655554 47777 788998 4 566632 222367789999999987 777655555555
Q ss_pred -CCCCCeEECcCceeeeecCccc-cCCCCCCEEECCCCcccccCch-hhhcccCCCeEeccCCcCcc
Q 042887 509 -CTTLEYLHLQGNSFSGSLPLSL-KTLKSIKELDLSRNNLSGQIPK-YLENLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 509 -l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~~ 572 (628)
+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 8999999999999976555555 6789999999999999755444 44568999999999999854
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=5.8e-26 Score=223.16 Aligned_cols=210 Identities=21% Similarity=0.240 Sum_probs=183.7
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
+++.|++++|.+++..+..+.++++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 67788888888887777788999999999999999998888889999999999999999998888889999999999999
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccc-cchhhhccCCCCEeeCcCCcCcccCCccccCCCCCC----eEEC
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS-IPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLE----YLHL 517 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L 517 (628)
+|++++..+..+..+++| +.|++++|++++. +|..+..+++|++|++++|++++..+..+..+++|+ .|++
T Consensus 109 ~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTL----KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TSCCCCSTTCCCTTCTTC----CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCccccCchhcccCCCC----CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 999997777788888888 8899999999864 588999999999999999999987777787777777 8999
Q ss_pred cCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887 518 QGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK 577 (628)
Q Consensus 518 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~ 577 (628)
++|++++..+..+.. .+|++|++++|++++..+..|..+++|+.|++++|++++..|..
T Consensus 185 s~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 185 SLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 999999766655544 58999999999999887778899999999999999999887754
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.9e-25 Score=219.00 Aligned_cols=200 Identities=24% Similarity=0.238 Sum_probs=134.3
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
+++.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 56777777777763 333332 4667777777777766666677777777777777777654332 566777777777
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
+|+++ .+|..+..+++| +.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus 86 ~N~l~-~l~~~~~~l~~L----~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp SSCCS-SCCCCTTTCTTC----CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCcCC-cCchhhccCCCC----CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 77776 556666666666 6677777777766666677777777777777777766666666777777777777777
Q ss_pred eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCccc
Q 042887 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE 573 (628)
Q Consensus 523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 573 (628)
++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.+++++|++...
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 7555555666777777777777776 4555555666777777777776543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4.3e-25 Score=216.01 Aligned_cols=206 Identities=22% Similarity=0.245 Sum_probs=160.1
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
..+.++++++.++. +|..+. ++++.|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34566666666663 343332 467788888888877666678888888888888888886666667778888888888
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
+|++++..+..+..+++| +.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 94 ~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNL----AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp SSCCCCCCTTTTTTCSSC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCcCCHhHcccccCC----CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 888887666677777777 7888888888877777788888888888888888876666678888888888888888
Q ss_pred eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 575 (628)
++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++....+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 87666678888888888888888887777778888888888888888876654
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.9e-25 Score=219.53 Aligned_cols=223 Identities=21% Similarity=0.234 Sum_probs=192.9
Q ss_pred EEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccc
Q 042887 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL 446 (628)
Q Consensus 367 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 446 (628)
++..+..+. .+|..+. ++++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 3444443 5799999999999988888999999999999999999988888999999999999999999
Q ss_pred ccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCccc-CCccccCCCCCCeEECcCceeeee
Q 042887 447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNE-IPVTLSACTTLEYLHLQGNSFSGS 525 (628)
Q Consensus 447 ~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~ 525 (628)
++..+..+.++++| +.|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++.
T Consensus 89 ~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 89 QSLALGAFSGLSSL----QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CEECTTTTTTCTTC----CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CccChhhhcCCccc----cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 98888899999999 8999999999987777899999999999999999874 589999999999999999999988
Q ss_pred cCccccCCCCCC----EEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC-CCCCCCCcccccCCCCCccc
Q 042887 526 LPLSLKTLKSIK----ELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK-GVFGNRTGIHLIGNERLCGG 597 (628)
Q Consensus 526 ~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~~~c~~ 597 (628)
.+..+..+++|+ .|++++|++++..+..+.. .+|++|++++|++++.++.. ..+++++.+++++|++.|..
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 888887777777 9999999999776666654 48999999999999776643 56789999999999999863
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1e-24 Score=213.25 Aligned_cols=204 Identities=26% Similarity=0.254 Sum_probs=182.7
Q ss_pred CcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccce
Q 042887 387 NINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRL 466 (628)
Q Consensus 387 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~ 466 (628)
+.+.++++++.++. +|..+. +++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++| +.
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L----~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL----ET 89 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC----CE
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC----CE
Confidence 56789999999984 565554 689999999999998877899999999999999999997777777889888 89
Q ss_pred EEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcc
Q 042887 467 LDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNL 546 (628)
Q Consensus 467 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 546 (628)
|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence 99999999987778889999999999999999988888899999999999999999977777799999999999999999
Q ss_pred cccCchhhhcccCCCeEeccCCcCcccCCC-CCCCCCCCcccccCCCCCccc
Q 042887 547 SGQIPKYLENLLFLAYLNLSYNHFEGEVPR-KGVFGNRTGIHLIGNERLCGG 597 (628)
Q Consensus 547 ~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~ 597 (628)
++..+..|..+++|++|++++|++++..+. ...+++++.+++.+||+.|..
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 988888899999999999999999976554 355788999999999999863
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=6.8e-24 Score=209.20 Aligned_cols=204 Identities=20% Similarity=0.191 Sum_probs=179.4
Q ss_pred ccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCC
Q 042887 333 LTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNL 412 (628)
Q Consensus 333 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 412 (628)
+.++++++.++++++.++.+... +..+++.|++++|.+++..+..+..+++|+.|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 55678899999999998876432 234899999999999998889999999999999999999865443 788999
Q ss_pred CeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEee
Q 042887 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFD 492 (628)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 492 (628)
++|++++|+++ .+|..+..+++|++|++++|++++..+..|.++++| +.|++++|++++..+..|..+++|++|+
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL----QELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC----CEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC----CEEECCCCCCCccChhhcccccCCCEEE
Confidence 99999999998 677888999999999999999998878889999888 8999999999987777889999999999
Q ss_pred CcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccc
Q 042887 493 LSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSG 548 (628)
Q Consensus 493 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 548 (628)
|++|+++...+..|..+++|+.|+|++|+++ .+|..+...++|+.|+|++|++..
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9999999777777888999999999999998 678888888899999999999874
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.5e-24 Score=209.64 Aligned_cols=200 Identities=27% Similarity=0.242 Sum_probs=162.9
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
+++.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 566777777766532 3577888888888888888753 467888888899998888887777778888889999998
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
+|++++..+..+..+++| +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 118 ~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNL----TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp TSCCCCCCTTTTTTCTTC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCccCHHHhccCCCC----CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 888887777778888888 8888999988877777788888999999999998877777788888999999999999
Q ss_pred eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCC
Q 042887 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRK 577 (628)
Q Consensus 523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~ 577 (628)
++..+..+..+++|+.|++++|++.+. ++.|+.++++.|.++|.+|..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 877777788889999999999988754 346788888899999888753
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.8e-25 Score=227.09 Aligned_cols=209 Identities=17% Similarity=0.238 Sum_probs=143.8
Q ss_pred EEEccCCccccccchhhhCCCCCCEEecccCcCccccc----ccccCCC-CCCEeecccccCcccCCcCccCC-----CC
Q 042887 166 MIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP----DSLCQLR-SLNYLSISENNFSCKLPLSIWNI-----SS 235 (628)
Q Consensus 166 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~N~i~~~~p~~~~~l-----~~ 235 (628)
..+++.|++++.+|..+...++|++|||++|.+++..+ +.|..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888877777779999999999987766 7788888 89999999999987777777665 88
Q ss_pred CCEEEeecccCcccCChhhhh---CC-CCCcEEecccCccccccccccc----C-CCCCCEEEcccccceeecccc----
Q 042887 236 LEIISLHSNRFEGSLPLNIGF---NI-PNVNFLSVGQNNFTGSLPHSFS----N-ASNLQVLDVYKNHFSGQVKID---- 302 (628)
Q Consensus 236 L~~L~L~~n~l~~~~~~~~~~---~l-~~L~~L~L~~N~l~~~~~~~~~----~-l~~L~~L~L~~N~i~~~~~~~---- 302 (628)
|++|+|++|.+++..+..+.. .+ ++|++|++++|++++..+..+. . .++|++|++++|++++.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999988555544332 23 7888888888888876655443 3 358888888888887544333
Q ss_pred cccCC-CCCEEEccCCcCCCcCCCCccccccccCC-CCCceeecccCCcccccchHHH----hccccccEEEccCCccee
Q 042887 303 FNRLS-NLSRLFLSKNNLGTESTSDLDFLTLLTNC-SQMEMLYLNTNKFGGVFLRSIA----NLSAKITVIGMGDNQISG 376 (628)
Q Consensus 303 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~ 376 (628)
+...+ +|++|++++|+++..... .....+..+ ++|+.|++++|.++......++ ....+|+.|++++|.+++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 33444 788888888877653322 122234444 3777777777777664433222 222245555555555544
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=1.2e-25 Score=232.28 Aligned_cols=251 Identities=19% Similarity=0.246 Sum_probs=142.8
Q ss_pred ccccccCCCCCCEEEcccccceeeccc----ccccCCCCCEEEccCCcCCCcCCCCc----cccccccCCCCCceeeccc
Q 042887 275 LPHSFSNASNLQVLDVYKNHFSGQVKI----DFNRLSNLSRLFLSKNNLGTESTSDL----DFLTLLTNCSQMEMLYLNT 346 (628)
Q Consensus 275 ~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~ 346 (628)
++..+..+++|++|++++|+++...+. .+..+++|++|++++|.+..+..... .....+..+++|+.|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 344555566666666666666544332 24456666666666654432211000 0111223444444444444
Q ss_pred CCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCC----C---------CCCC
Q 042887 347 NKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGE----L---------KNLQ 413 (628)
Q Consensus 347 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~----l---------~~L~ 413 (628)
|.++..... .+|..+..+++|+.|++++|.+++..+..+.. + ++|+
T Consensus 104 n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 104 NAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 444332211 23455677778888888888776443333332 2 6777
Q ss_pred eEecccCccc-cccC---ccccCCCCCCeEecCCccccc-----ccCCcccCCcchhcccceEEcCCCcCc----cccch
Q 042887 414 GLALVRNSLR-GTIP---DTLGNLTLLNRLFLGFNNLQG-----NVPSSLGNCQNLMTLSRLLDLSGNLLG----GSIPL 480 (628)
Q Consensus 414 ~L~L~~n~l~-~~~~---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~l~~~L~Ls~N~l~----~~~~~ 480 (628)
+|++++|+++ +..+ ..+..+++|++|++++|+++. ..+..+..+++| +.|+|++|.++ ..+|.
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L----~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL----KVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC----CEEECCSSCCHHHHHHHHHH
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc----cEEECcCCCCCcHHHHHHHH
Confidence 7777777776 2233 345566777777777777762 233355556666 66777777764 34555
Q ss_pred hhhccCCCCEeeCcCCcCccc----CCcccc--CCCCCCeEECcCceeee----ecCccc-cCCCCCCEEECCCCccccc
Q 042887 481 EVGNLRNLAEFDLSENHFSNE----IPVTLS--ACTTLEYLHLQGNSFSG----SLPLSL-KTLKSIKELDLSRNNLSGQ 549 (628)
Q Consensus 481 ~~~~l~~L~~L~Ls~N~l~~~----~~~~~~--~l~~L~~L~Ls~N~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~~~ 549 (628)
.+..+++|++|+|++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 666667777777777776644 334442 26667777777777665 355555 4466777777777777655
Q ss_pred C
Q 042887 550 I 550 (628)
Q Consensus 550 ~ 550 (628)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 5
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=212.54 Aligned_cols=225 Identities=17% Similarity=0.176 Sum_probs=153.7
Q ss_pred CCceeecccCCcccccchHHHhc--cccccEEEccCCcceeeCchhh--hccCCcCeeeeccccccccCC----cCCCCC
Q 042887 338 QMEMLYLNTNKFGGVFLRSIANL--SAKITVIGMGDNQISGTIPSEI--KNLVNINAFGVEYNQLTGTIP----HAIGEL 409 (628)
Q Consensus 338 ~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~l 409 (628)
.++.+.+..+.++......+... ..+++.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35555555555543322221111 1257888888888877777776 778888888888888876444 334567
Q ss_pred CCCCeEecccCccccccCccccCCCCCCeEecCCcccccc---c-CCcccCCcchhcccceEEcCCCcCccccch----h
Q 042887 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGN---V-PSSLGNCQNLMTLSRLLDLSGNLLGGSIPL----E 481 (628)
Q Consensus 410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~----~ 481 (628)
++|++|++++|++.+..+..|..+++|++|++++|++.+. . +..+..+++| ++|++++|+++. ++. .
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L----~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI----QNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC----CSCBCCSSCCCC-HHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC----CEEECCCCCCCc-hHHHHHHH
Confidence 7888888888888877777788888888888888876542 1 2233566666 777888888863 222 2
Q ss_pred hhccCCCCEeeCcCCcCcccCCccccCC---CCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhccc
Q 042887 482 VGNLRNLAEFDLSENHFSNEIPVTLSAC---TTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLL 558 (628)
Q Consensus 482 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 558 (628)
++.+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|+|++. |. +..++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~ 294 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELP 294 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCC
Confidence 4667888888888888877666666655 58888888888887 5566553 6788888888888754 32 56777
Q ss_pred CCCeEeccCCcCcc
Q 042887 559 FLAYLNLSYNHFEG 572 (628)
Q Consensus 559 ~L~~L~ls~N~l~~ 572 (628)
+|+.|++++|+|+.
T Consensus 295 ~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 295 EVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCEECSSTTTSC
T ss_pred CccEEECcCCCCCC
Confidence 88888888887753
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=7.6e-25 Score=223.84 Aligned_cols=265 Identities=18% Similarity=0.227 Sum_probs=160.7
Q ss_pred EEecccCcCcccccccccCCCCCCEeecccccCcccCC----cCccCCC-CCCEEEeecccCcccCChhhhhC----CCC
Q 042887 190 AIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLP----LSIWNIS-SLEIISLHSNRFEGSLPLNIGFN----IPN 260 (628)
Q Consensus 190 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~----l~~ 260 (628)
.+++++|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+... .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888877777779999999999987666 6778888 89999999999985545444431 288
Q ss_pred CcEEecccCccccccccccc----CC-CCCCEEEcccccceeeccccccc-----CCCCCEEEccCCcCCCcCCCCcccc
Q 042887 261 VNFLSVGQNNFTGSLPHSFS----NA-SNLQVLDVYKNHFSGQVKIDFNR-----LSNLSRLFLSKNNLGTESTSDLDFL 330 (628)
Q Consensus 261 L~~L~L~~N~l~~~~~~~~~----~l-~~L~~L~L~~N~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~ 330 (628)
|++|+|++|++++..+..+. .+ ++|++|++++|++++..+..+.. .++|++|++++|.++..... ...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD--ELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH--HHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH--HHH
Confidence 88888888888876665443 34 78888888888887666655433 25788888888877643221 122
Q ss_pred ccccCCC-CCceeecccCCcccccchHHHhc----cccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcC
Q 042887 331 TLLTNCS-QMEMLYLNTNKFGGVFLRSIANL----SAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHA 405 (628)
Q Consensus 331 ~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 405 (628)
..+...+ +|+.|++++|.+++..+..+... +.+|+.|++++|.+.+..... ++..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~--------------------l~~~ 219 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--------------------LAYI 219 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH--------------------HHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH--------------------HHHH
Confidence 2333343 67777777777666555444322 124455555555444321110 1222
Q ss_pred CCC-CCCCCeEecccCccccccC----ccccCCCCCCeEecCCcccccc-------cCCcccCCcchhcccceEEcCCCc
Q 042887 406 IGE-LKNLQGLALVRNSLRGTIP----DTLGNLTLLNRLFLGFNNLQGN-------VPSSLGNCQNLMTLSRLLDLSGNL 473 (628)
Q Consensus 406 ~~~-l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~l~~~L~Ls~N~ 473 (628)
+.. .++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+. .+..+..+++| +.||+++|.
T Consensus 220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L----~~LdL~~N~ 295 (362)
T 3goz_A 220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI----ILVDKNGKE 295 (362)
T ss_dssp HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEE----EEECTTSCB
T ss_pred HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCce----EEEecCCCc
Confidence 222 2355555555555553322 2234445556666655553221 22234444444 666777777
Q ss_pred Cccccch
Q 042887 474 LGGSIPL 480 (628)
Q Consensus 474 l~~~~~~ 480 (628)
+....+.
T Consensus 296 l~~~~~~ 302 (362)
T 3goz_A 296 IHPSHSI 302 (362)
T ss_dssp CCGGGCH
T ss_pred CCCcchH
Confidence 6654443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.3e-23 Score=201.58 Aligned_cols=199 Identities=19% Similarity=0.180 Sum_probs=109.2
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeecccc-ccccCCcCCCCCCCCCeEeccc-CccccccCccccCCCCCCeEe
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQ-LTGTIPHAIGELKNLQGLALVR-NSLRGTIPDTLGNLTLLNRLF 440 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 440 (628)
+++.|++++|++++..+..|.++++|+.|++++|+ +++..+..|..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45566666666665555566666666666666665 5555555566666666666665 666655555566666666666
Q ss_pred cCCcccccccCCcccCCcchhcccceEEcCCC-cCccccchhhhccCCCC-EeeCcCCcCcccCCccccCCCCCCeEECc
Q 042887 441 LGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGN-LLGGSIPLEVGNLRNLA-EFDLSENHFSNEIPVTLSACTTLEYLHLQ 518 (628)
Q Consensus 441 L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 518 (628)
+++|++++ +|. +..+++|..+ +.|++++| ++++..+..|.++++|+ +|++++|+++...+..+.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L-~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIF-FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSE-EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccc-cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 66666653 333 5555555221 25566666 55544444555555555 5555555555333333333 555555555
Q ss_pred Cce-eeeecCccccCC-CCCCEEECCCCcccccCchhhhcccCCCeEeccCC
Q 042887 519 GNS-FSGSLPLSLKTL-KSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568 (628)
Q Consensus 519 ~N~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 568 (628)
+|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 553 554444455555 5555555555555533222 3444555555544
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=4.6e-23 Score=199.22 Aligned_cols=178 Identities=20% Similarity=0.208 Sum_probs=86.9
Q ss_pred ccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCC
Q 042887 364 ITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGF 443 (628)
Q Consensus 364 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 443 (628)
.+.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4455555555542 232222 3455555555555544444555555555555555555544444455555555555555
Q ss_pred cccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceee
Q 042887 444 NNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFS 523 (628)
Q Consensus 444 N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 523 (628)
|++++..+..+..+++| +.|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+++
T Consensus 93 n~l~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQL----DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTC----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcccccChhHhcccCCC----CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 55554444444444444 44455555554443334444555555555555554444434444455555555555554
Q ss_pred eecCccccCCCCCCEEECCCCcccc
Q 042887 524 GSLPLSLKTLKSIKELDLSRNNLSG 548 (628)
Q Consensus 524 ~~~~~~~~~l~~L~~L~Ls~N~l~~ 548 (628)
+..+..+..+++|+.|++++|+++.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 4444444444555555555555443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=9.8e-24 Score=202.42 Aligned_cols=198 Identities=13% Similarity=0.121 Sum_probs=175.0
Q ss_pred CCcCeeeeccccccccCCcCCCCCCCCCeEecccCc-cccccCccccCCCCCCeEecCC-cccccccCCcccCCcchhcc
Q 042887 386 VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNS-LRGTIPDTLGNLTLLNRLFLGF-NNLQGNVPSSLGNCQNLMTL 463 (628)
Q Consensus 386 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~l 463 (628)
++++.|++++|++++..+..|..+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L--- 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL--- 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC---
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC---
Confidence 389999999999998888899999999999999997 9877777999999999999998 99998888899999998
Q ss_pred cceEEcCCCcCccccchhhhccCCCC---EeeCcCC-cCcccCCccccCCCCCC-eEECcCceeeeecCccccCCCCCCE
Q 042887 464 SRLLDLSGNLLGGSIPLEVGNLRNLA---EFDLSEN-HFSNEIPVTLSACTTLE-YLHLQGNSFSGSLPLSLKTLKSIKE 538 (628)
Q Consensus 464 ~~~L~Ls~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~ 538 (628)
+.|++++|++++ +|. +..+++|+ +|++++| ++++..+..|.++++|+ +|++++|+++...+..+.. ++|+.
T Consensus 108 -~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 108 -KFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp -CEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred -CEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence 899999999996 555 88889998 9999999 99988788899999999 9999999999555555655 89999
Q ss_pred EECCCCc-ccccCchhhhcc-cCCCeEeccCCcCcccCCCCCCCCCCCcccccCCC
Q 042887 539 LDLSRNN-LSGQIPKYLENL-LFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNE 592 (628)
Q Consensus 539 L~Ls~N~-l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~ 592 (628)
|++++|+ ++...+..|..+ ++|+.|++++|++++..+. .+++++.+++.++.
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 9999995 998888899999 9999999999999865443 67888888887664
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.1e-23 Score=202.04 Aligned_cols=201 Identities=23% Similarity=0.239 Sum_probs=177.0
Q ss_pred EEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcc
Q 042887 366 VIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNN 445 (628)
Q Consensus 366 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 445 (628)
.+.+..+.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|+
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCc
Confidence 344445544433 3467889999999999998743 4588899999999999999853 478999999999999999
Q ss_pred cccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeee
Q 042887 446 LQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGS 525 (628)
Q Consensus 446 l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 525 (628)
+++..+..+..+++| +.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 97 l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNL----KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp CCCCCTTTTTTCTTC----CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCccChhHhcCCcCC----CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 998888888999998 8999999999988888899999999999999999988888889999999999999999988
Q ss_pred cCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCC
Q 042887 526 LPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 526 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~ 576 (628)
.+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 888889999999999999999998888899999999999999999987763
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=9.5e-23 Score=196.99 Aligned_cols=183 Identities=22% Similarity=0.217 Sum_probs=164.6
Q ss_pred CCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccc
Q 042887 386 VNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSR 465 (628)
Q Consensus 386 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~ 465 (628)
...+.++++++.+. .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..+..+.++++| +
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~ 86 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL----G 86 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----C
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC----C
Confidence 45678999999998 4565554 689999999999998888899999999999999999998888889999888 8
Q ss_pred eEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCc
Q 042887 466 LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNN 545 (628)
Q Consensus 466 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 545 (628)
.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 87 TLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 99999999998888889999999999999999997777778999999999999999997777789999999999999999
Q ss_pred ccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887 546 LSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 546 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 575 (628)
+++..+..|..+++|+.|++++|++++...
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 196 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence 998888899999999999999999988744
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.5e-23 Score=207.84 Aligned_cols=223 Identities=21% Similarity=0.186 Sum_probs=182.7
Q ss_pred cccEEEccCCcceeeCch---hhhccCCcCeeeeccccccccCCcCC--CCCCCCCeEecccCccccccC----ccccCC
Q 042887 363 KITVIGMGDNQISGTIPS---EIKNLVNINAFGVEYNQLTGTIPHAI--GELKNLQGLALVRNSLRGTIP----DTLGNL 433 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l 433 (628)
.++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 567788888776532111 12345779999999999999988888 899999999999999997555 345679
Q ss_pred CCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccc--c--chhhhccCCCCEeeCcCCcCcccCCc----c
Q 042887 434 TLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGS--I--PLEVGNLRNLAEFDLSENHFSNEIPV----T 505 (628)
Q Consensus 434 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~--~--~~~~~~l~~L~~L~Ls~N~l~~~~~~----~ 505 (628)
++|++|++++|++++..+..+..+++| ++|++++|++.+. . +..+..+++|++|++++|+++. .+. .
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPAL----TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTC----CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCC----CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 999999999999998888999999998 8999999998652 2 2234789999999999999973 222 3
Q ss_pred ccCCCCCCeEECcCceeeeecCccccCC---CCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCC
Q 042887 506 LSACTTLEYLHLQGNSFSGSLPLSLKTL---KSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGN 582 (628)
Q Consensus 506 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~ 582 (628)
+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+ .+|..+. ++|++|++++|++++. |....+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCC
Confidence 5788999999999999998878777776 69999999999999 5666654 7999999999999974 44566788
Q ss_pred CCcccccCCCCC
Q 042887 583 RTGIHLIGNERL 594 (628)
Q Consensus 583 l~~~~~~~n~~~ 594 (628)
++.+++++|+..
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 999999999754
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=4.7e-25 Score=227.78 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=26.4
Q ss_pred ccchhhhCCCCCCEEecccCcCcccccc----cccCCCCCCEeecccc
Q 042887 177 KFPDFIANFSALEAIDISANMLGGRIPD----SLCQLRSLNYLSISEN 220 (628)
Q Consensus 177 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N 220 (628)
.++..+..+++|++|+|++|.++...+. .+..+++|++|+|++|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~ 70 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 70 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc
Confidence 3445566666677777777766654332 3556666666666664
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.4e-23 Score=210.83 Aligned_cols=251 Identities=17% Similarity=0.189 Sum_probs=177.4
Q ss_pred CCCEEEcccccceeecccccccC--CCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhcc
Q 042887 284 NLQVLDVYKNHFSGQVKIDFNRL--SNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLS 361 (628)
Q Consensus 284 ~L~~L~L~~N~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 361 (628)
.++.+++++|.+. +..+..+ ++++.|++++|.+.+.... +..+++|+.|++++|.+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-------~~~~~~L~~L~L~~~~l------------ 105 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-------HFSPFRVQHMDLSNSVI------------ 105 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-------CCCCBCCCEEECTTCEE------------
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-------hccCCCCCEEEccCCCc------------
Confidence 3666777766655 3445555 6777777777766553221 22334455555554443
Q ss_pred ccccEEEccCCcceee-CchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccC-ccccc-cCccccCCCCCCe
Q 042887 362 AKITVIGMGDNQISGT-IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRN-SLRGT-IPDTLGNLTLLNR 438 (628)
Q Consensus 362 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~ 438 (628)
.+. ++..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+++. .+..+..+++|++
T Consensus 106 -------------~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 106 -------------EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp -------------CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred -------------CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 322 3445667777888888888777666777777888888888888 56652 5666777888888
Q ss_pred EecCCc-ccccc-cCCcccCCc-chhcccceEEcCCC--cCc-cccchhhhccCCCCEeeCcCCc-CcccCCccccCCCC
Q 042887 439 LFLGFN-NLQGN-VPSSLGNCQ-NLMTLSRLLDLSGN--LLG-GSIPLEVGNLRNLAEFDLSENH-FSNEIPVTLSACTT 511 (628)
Q Consensus 439 L~L~~N-~l~~~-~~~~~~~l~-~L~~l~~~L~Ls~N--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~ 511 (628)
|++++| .+++. .+..+..++ +| +.|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L----~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETI----TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTC----CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred EcCCCCCCcChHHHHHHHHhcccCC----CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 888888 88754 455667777 77 88889988 454 3466778889999999999999 77777888899999
Q ss_pred CCeEECcCce-eeeecCccccCCCCCCEEECCCCcccccCchhhhcc-cCCCeEeccCCcCcccCCCC
Q 042887 512 LEYLHLQGNS-FSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL-LFLAYLNLSYNHFEGEVPRK 577 (628)
Q Consensus 512 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~p~~ 577 (628)
|++|++++|. +.......+..+++|+.|++++| ++. +.+..+ ..+..|++++|++++..|..
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 9999999995 33222236788999999999999 443 334444 34778889999999987753
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.3e-23 Score=212.84 Aligned_cols=256 Identities=18% Similarity=0.247 Sum_probs=168.3
Q ss_pred cccEEEccCCccccccchhhhCC--CCCCEEecccCcCcccccccccCCCCCCEeecccccCccc-CCcCccCCCCCCEE
Q 042887 163 KLEMIDVGDNQLIGKFPDFIANF--SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCK-LPLSIWNISSLEII 239 (628)
Q Consensus 163 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~p~~~~~l~~L~~L 239 (628)
.++.+|+++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3678889888876 5667776 8888999998888866554 55788888888888888755 67777888888888
Q ss_pred EeecccCcccCChhhhhCCCCCcEEecccC-ccccc-ccccccCCCCCCEEEcccc-cceee-cccccccCC-CCCEEEc
Q 042887 240 SLHSNRFEGSLPLNIGFNIPNVNFLSVGQN-NFTGS-LPHSFSNASNLQVLDVYKN-HFSGQ-VKIDFNRLS-NLSRLFL 314 (628)
Q Consensus 240 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~-~L~~L~L 314 (628)
++++|.+++..+..+.. +++|++|++++| .+++. .+..+.++++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 88888887666665553 788888888888 56652 5556777788888888888 77653 345566777 7777777
Q ss_pred cCCc--CCCcCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeee
Q 042887 315 SKNN--LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFG 392 (628)
Q Consensus 315 ~~n~--l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 392 (628)
++|. ++.. ..+..+..+++|+.|++++|.. +++..+..+..+++|+.|+
T Consensus 203 ~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~------------------------l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 203 SGYRKNLQKS-----DLSTLVRRCPNLVHLDLSDSVM------------------------LKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp CSCGGGSCHH-----HHHHHHHHCTTCSEEECTTCTT------------------------CCGGGGGGGGGCTTCCEEE
T ss_pred CCCcccCCHH-----HHHHHHhhCCCCCEEeCCCCCc------------------------CCHHHHHHHhCCCCCCEee
Confidence 7773 3210 1222333444455555444441 3334445566667777777
Q ss_pred ecccc-ccccCCcCCCCCCCCCeEecccCccccccCccccCC-CCCCeEecCCcccccccCCcccC
Q 042887 393 VEYNQ-LTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNL-TLLNRLFLGFNNLQGNVPSSLGN 456 (628)
Q Consensus 393 l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~ 456 (628)
+++|. +.......+..+++|+.|++++| ++. ..+..+ .++..|++++|++++..|..++.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 77773 32222224666777788888777 332 223333 23566667888887777766654
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=3.2e-22 Score=199.22 Aligned_cols=190 Identities=24% Similarity=0.334 Sum_probs=150.4
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
+++.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 677777777777643 3 57788888888888888875544 88888888999988888753 368888889999999
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
+|++++.. .+..+++| +.|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++
T Consensus 116 ~n~l~~~~--~l~~l~~L----~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 116 STQITDVT--PLAGLSNL----QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TSCCCCCG--GGTTCTTC----CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCCCCch--hhcCCCCC----CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 88887532 27777777 888899998885443 7888899999999998885433 78888999999999998
Q ss_pred eeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcc
Q 042887 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 572 (628)
++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 85443 7888899999999999986553 7888899999999998876
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=5.4e-22 Score=201.58 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccC-CcCccCCCCCCE-EEee
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKL-PLSIWNISSLEI-ISLH 242 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~-p~~~~~l~~L~~-L~L~ 242 (628)
++++-++++++ .+|..+ .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+ +.+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666 344433 246666666666666555556666666666666666654333 345566665543 4444
Q ss_pred cccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEccc-ccceeecccccccCC-CCCEEEccCCcCC
Q 042887 243 SNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYK-NHFSGQVKIDFNRLS-NLSRLFLSKNNLG 320 (628)
Q Consensus 243 ~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~-~L~~L~L~~n~l~ 320 (628)
.|+++ .++...+..+++|++|++++|+++...+..+....++..|++.+ +++..+.+..|..+. .++.|++++|+++
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55665 44444444555566666655555544444444445555555533 344444444444432 3444444444443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.4e-21 Score=198.61 Aligned_cols=76 Identities=21% Similarity=0.160 Sum_probs=32.4
Q ss_pred ceEEcCC-CcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCC
Q 042887 465 RLLDLSG-NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSR 543 (628)
Q Consensus 465 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 543 (628)
+.+++++ |.++...+..|.++++|++||+++|+|+...+..+ .+|+.|.+.++.-...+| .+..+++|+.+++++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 3444442 34443333345555555555555555553332222 233333332222112333 244555555555544
Q ss_pred C
Q 042887 544 N 544 (628)
Q Consensus 544 N 544 (628)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 3
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=7.7e-22 Score=196.47 Aligned_cols=206 Identities=27% Similarity=0.340 Sum_probs=173.7
Q ss_pred ccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccccc
Q 042887 369 MGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQG 448 (628)
Q Consensus 369 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 448 (628)
++.+.+.+.. ....+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++
T Consensus 26 l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 26 AGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp TTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred hCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence 4444444332 35678899999999999985 34 68899999999999999996544 9999999999999999985
Q ss_pred ccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCc
Q 042887 449 NVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPL 528 (628)
Q Consensus 449 ~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 528 (628)
. ..+..+++| +.|++++|++++. + .+..+++|++|++++|++++..+ +..+++|++|++++|++++..+
T Consensus 100 ~--~~~~~l~~L----~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 100 V--SAIAGLQSI----KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp C--GGGTTCTTC----CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred c--hhhcCCCCC----CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-
Confidence 3 367778888 8999999999864 3 38999999999999999986544 8899999999999999996443
Q ss_pred cccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCc
Q 042887 529 SLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLC 595 (628)
Q Consensus 529 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 595 (628)
+..+++|+.|++++|++++..+ +..+++|++|++++|++++..| ...+++++.+++++|+..+
T Consensus 169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 8999999999999999996554 8899999999999999998665 5678899999999998655
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=8e-21 Score=177.85 Aligned_cols=179 Identities=21% Similarity=0.277 Sum_probs=135.1
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n 244 (628)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 466777777764 34332 457888888888888777777888888888888888888666666788888888888888
Q ss_pred cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCC
Q 042887 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTEST 324 (628)
Q Consensus 245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 324 (628)
.++ .+|...+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+..
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 887 6666665568888888888888887777778888888888888888887777778888888888888886643
Q ss_pred CCccccccccCCCCCceeecccCCcccccchHHHhc
Q 042887 325 SDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANL 360 (628)
Q Consensus 325 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~ 360 (628)
.++.|+.|+++.|.+++..+..++.+
T Consensus 163 ----------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 ----------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ----------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ----------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 34567777777777776666554443
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=3.9e-21 Score=181.26 Aligned_cols=151 Identities=18% Similarity=0.204 Sum_probs=72.7
Q ss_pred eeeeccccccccCCcCCCCCCCCCeEecccCccccccC-ccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEE
Q 042887 390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIP-DTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLD 468 (628)
Q Consensus 390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~ 468 (628)
.+++++|.++. +|..+. +.+++|++++|++++..+ ..|..+++|++|++++|+|++..+..|.++++| +.|+
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L----~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV----NEIL 87 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC----CEEE
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC----CEEE
Confidence 55555555553 333332 234555555555554432 234555555555555555554444444444444 4445
Q ss_pred cCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 469 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|+++
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555554444444444444444444444444444444444444444444444444444444444444444444444444
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=8.4e-21 Score=177.73 Aligned_cols=173 Identities=24% Similarity=0.218 Sum_probs=128.9
Q ss_pred eeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEc
Q 042887 390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDL 469 (628)
Q Consensus 390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~L 469 (628)
.++.+++.++. +|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++| ++|++
T Consensus 11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~L 83 (208)
T 2o6s_A 11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL----TYLNL 83 (208)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC----CEEEC
T ss_pred EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCc----CEEEC
Confidence 44555555552 33322 3467777777777776666667777778888888777776666666777777 77888
Q ss_pred CCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccccc
Q 042887 470 SGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQ 549 (628)
Q Consensus 470 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 549 (628)
++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 8888876666667888888888888888887666677888888888888888886666668888888888888887774
Q ss_pred CchhhhcccCCCeEeccCCcCcccCCC
Q 042887 550 IPKYLENLLFLAYLNLSYNHFEGEVPR 576 (628)
Q Consensus 550 ~~~~~~~l~~L~~L~ls~N~l~~~~p~ 576 (628)
.+++|++|+++.|+++|.+|.
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBC
T ss_pred ------CCCCHHHHHHHHHhCCceeec
Confidence 345788888888988888875
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=5.3e-21 Score=180.36 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=80.8
Q ss_pred CeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEE
Q 042887 389 NAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLD 468 (628)
Q Consensus 389 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~ 468 (628)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|++++..|..|.++++| ++|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L----~~L~ 86 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL----NSLV 86 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC----CEEE
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC----CEEE
Confidence 34555666555 2333332 455666666666655555555555566666665555555555555555555 5555
Q ss_pred cCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 469 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
|++|+|+...+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5555555444444455555555555555555444555555555555555555555444444555555555555555544
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=2.1e-20 Score=176.31 Aligned_cols=153 Identities=20% Similarity=0.323 Sum_probs=137.8
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n 244 (628)
+.+++++++++. +|..+. ++|+.|++++|.++++.+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578999999884 555443 68999999999999888889999999999999999999888999999999999999999
Q ss_pred cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321 (628)
Q Consensus 245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 321 (628)
.++ .+|..++..+++|++|+|++|++++..|..|.++++|++|+|++|+++++.+..|..+++|++|++++|.+..
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 998 7888887789999999999999998888999999999999999999998888889999999999999998764
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=3e-20 Score=189.50 Aligned_cols=176 Identities=26% Similarity=0.210 Sum_probs=97.5
Q ss_pred eeeeccccccccCCcCCCCCCCCCeEecccCccccccCcccc-CCCCCCeEecCCcccccccCCcccCCcchhcccceEE
Q 042887 390 AFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLG-NLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLD 468 (628)
Q Consensus 390 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~ 468 (628)
.+++++++++. +|..+. +.++.|+|++|++++..+..|. .+++|++|++++|+|++..+..|.++++| +.|+
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L----~~L~ 94 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL----RYLD 94 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC----CEEE
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC----CEEE
Confidence 44455555442 333222 2355555555555555555454 55556666666665555555555555555 5556
Q ss_pred cCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccc---cCCCCCCEEECCCCc
Q 042887 469 LSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSL---KTLKSIKELDLSRNN 545 (628)
Q Consensus 469 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~ 545 (628)
|++|+|+...+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 66666655545555666666666666666665555566666666666666666664333333 345666666666666
Q ss_pred ccccCchhhhcccC--CCeEeccCCcCcc
Q 042887 546 LSGQIPKYLENLLF--LAYLNLSYNHFEG 572 (628)
Q Consensus 546 l~~~~~~~~~~l~~--L~~L~ls~N~l~~ 572 (628)
|+...++.+..++. ++.|++++|++..
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCccCHHHhhhccHhhcceEEecCCCccC
Confidence 66555555665554 3566666666553
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=6.5e-20 Score=195.78 Aligned_cols=187 Identities=22% Similarity=0.330 Sum_probs=85.4
Q ss_pred CCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEec
Q 042887 338 QMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLAL 417 (628)
Q Consensus 338 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 417 (628)
+++.|++++|.+++.... + .++++.|++++|.++ .+| ..+++|+.|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~-l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN-L---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSC-C---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHh-H---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 455555555555542221 1 124555555555554 233 234455555555555543 333 332 4555555
Q ss_pred ccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCc
Q 042887 418 VRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH 497 (628)
Q Consensus 418 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 497 (628)
++|.+++ +|. .+++|+.|++++|+|++ +|. .+++| +.|+|++|++++ +|. |. ++|++|+|++|+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L----~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL----EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC----CEEECCSSCCSC-CCC-CC--TTCCEEECCSSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc----CEEECCCCCCCC-cch-hh--CCCCEEECcCCC
Confidence 5555553 332 34455555555555543 232 22333 445555555543 333 33 455555555555
Q ss_pred CcccCCccccCCCCC-------CeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887 498 FSNEIPVTLSACTTL-------EYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557 (628)
Q Consensus 498 l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 557 (628)
|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 192 L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 192 LE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 54 2333 322 34 55555555554 344444445555555555555555445444443
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=8.6e-20 Score=172.03 Aligned_cols=153 Identities=21% Similarity=0.236 Sum_probs=135.3
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCccccc-ccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIP-DSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~ 243 (628)
+.+++++|.++. +|..+ ...+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999985 56544 3467899999999997754 5689999999999999999988888999999999999999
Q ss_pred ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321 (628)
Q Consensus 244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 321 (628)
|.++ .++...+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|.+..
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9998 6777766679999999999999998889999999999999999999998888899999999999999998865
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=8e-20 Score=180.19 Aligned_cols=173 Identities=29% Similarity=0.331 Sum_probs=109.0
Q ss_pred hhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchh
Q 042887 382 IKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM 461 (628)
Q Consensus 382 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 461 (628)
+..+++|+.|++++|.+.+. + .+..+++|++|++++|++++..+ +..+++|++|++++|++++. ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L- 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKL- 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTC-
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCC-
Confidence 34556666666666666533 2 35566666666666666664333 66666666666666666532 225555555
Q ss_pred cccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEEC
Q 042887 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDL 541 (628)
Q Consensus 462 ~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 541 (628)
+.|++++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|++
T Consensus 115 ---~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 115 ---KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp ---CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ---CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 6667777766643 3566667777777777777643 456667777777777777765433 666777777777
Q ss_pred CCCcccccCchhhhcccCCCeEeccCCcCcc
Q 042887 542 SRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 542 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 572 (628)
++|.+++. + .+..+++|+.|++++|+++.
T Consensus 186 ~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 186 SKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 77777643 3 36667777777777777654
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=6.7e-20 Score=186.90 Aligned_cols=177 Identities=25% Similarity=0.209 Sum_probs=152.1
Q ss_pred CeEecccCccccccCccccCCCCCCeEecCCcccccccCCccc-CCcchhcccceEEcCCCcCccccchhhhccCCCCEe
Q 042887 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLG-NCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF 491 (628)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L 491 (628)
+.++++++.++. +|..+. +.++.|++++|+|++..+..+. ++++| +.|+|++|+|++..+..|.++++|++|
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L----~~L~L~~N~i~~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNL----HSLLLSHNHLNFISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTC----CEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhccccc----CEEECCCCcCCccChhhccCCCCCCEE
Confidence 689999999984 665543 4689999999999988888887 88888 899999999998888899999999999
Q ss_pred eCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhh---hcccCCCeEeccCC
Q 042887 492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYL---ENLLFLAYLNLSYN 568 (628)
Q Consensus 492 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~ls~N 568 (628)
+|++|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 999999998888889999999999999999998889999999999999999999997666666 67999999999999
Q ss_pred cCcccCCC-CCCCCC--CCcccccCCCCCcc
Q 042887 569 HFEGEVPR-KGVFGN--RTGIHLIGNERLCG 596 (628)
Q Consensus 569 ~l~~~~p~-~~~~~~--l~~~~~~~n~~~c~ 596 (628)
+|++..+. ...++. ++.+++.+||+.|.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 99864432 122333 36789999999985
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2e-19 Score=170.68 Aligned_cols=153 Identities=24% Similarity=0.242 Sum_probs=82.5
Q ss_pred cCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceE
Q 042887 388 INAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLL 467 (628)
Q Consensus 388 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L 467 (628)
.+.++.+++.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++| +.|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L----~~L 93 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL----TVL 93 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC----CEE
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc----CEE
Confidence 345566666655 3333332 556666666666665555556666666666666666654444444555555 555
Q ss_pred EcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 468 DLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 468 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55555555444444555555555555555555 34444555555555555555555444444555555555555555554
Q ss_pred c
Q 042887 548 G 548 (628)
Q Consensus 548 ~ 548 (628)
.
T Consensus 173 c 173 (229)
T 3e6j_A 173 C 173 (229)
T ss_dssp T
T ss_pred C
Confidence 3
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2.2e-19 Score=177.00 Aligned_cols=175 Identities=22% Similarity=0.347 Sum_probs=142.3
Q ss_pred ccCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCC
Q 042887 157 QRLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSL 236 (628)
Q Consensus 157 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L 236 (628)
....+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++ +| .+..+++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 345678899999999998855 3 48889999999999999986554 8999999999999999985 33 48899999
Q ss_pred CEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccC
Q 042887 237 EIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSK 316 (628)
Q Consensus 237 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 316 (628)
++|++++|.++ .++ .+ ..+++|+.|++++|++++. ..+..+++|++|++++|++++..+ +..+++|++|++++
T Consensus 115 ~~L~L~~n~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 115 KSLSLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CEEECTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CEEECCCCcCC-CCh-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 99999999998 453 33 3589999999999999865 578889999999999999987655 88889999999999
Q ss_pred CcCCCcCCCCccccccccCCCCCceeecccCCcccc
Q 042887 317 NNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV 352 (628)
Q Consensus 317 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 352 (628)
|.++.+ ..+..+++|+.|++++|++...
T Consensus 188 N~i~~l--------~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 188 NHISDL--------RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp SCCCBC--------GGGTTCTTCSEEEEEEEEEECC
T ss_pred CcCCCC--------hhhccCCCCCEEECcCCcccCC
Confidence 988753 2366777888888888876543
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.5e-19 Score=169.10 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=124.3
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~ 243 (628)
.+.++.++++++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888887 4454333 7888999999998888888888888999999999988866667788888889999988
Q ss_pred ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321 (628)
Q Consensus 244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 321 (628)
|.++ .+|...+..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+..
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8888 677666667888888888888888 667778888888888888888887777778888888888888887764
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.1e-19 Score=191.92 Aligned_cols=181 Identities=21% Similarity=0.294 Sum_probs=126.2
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
+++.|++++|.+++ +|..+ .++|+.|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67788888888776 44444 267788888888877 445 346778888888888875 555 544 78888888
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
+|++++ +|. .+++| +.|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+|
T Consensus 129 ~N~l~~-lp~---~l~~L----~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L 192 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALL----EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL 192 (571)
T ss_dssp SSCCSC-CCC---CCTTC----CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC
T ss_pred CCcCCC-CCC---cCccc----cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC
Confidence 888875 444 45555 777888888875 443 46778888888888875 454 54 7788888888887
Q ss_pred eeecCccccCCCCC-------CEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887 523 SGSLPLSLKTLKSI-------KELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 523 ~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 575 (628)
+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|
T Consensus 193 ~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 193 E-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp S-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred C-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 7 5555 443 66 78888888887 456666668888888888888877655
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=4.4e-19 Score=191.56 Aligned_cols=187 Identities=27% Similarity=0.337 Sum_probs=141.1
Q ss_pred EEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCccc
Q 042887 367 IGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNL 446 (628)
Q Consensus 367 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 446 (628)
+.++.+.+.+.. .+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++
T Consensus 26 l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 344445544332 256777888888888887743 3 47778888888888888886544 77888888888888888
Q ss_pred ccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeec
Q 042887 447 QGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL 526 (628)
Q Consensus 447 ~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 526 (628)
++ + ..+..+++| +.|+|++|++.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..
T Consensus 100 ~~-l-~~l~~l~~L----~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 100 KD-L-SSLKDLKKL----KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp CC-C-TTSTTCTTC----CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CC-C-hhhccCCCC----CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 74 2 356777777 7888888888753 4577888888888888888754 56788888888888888888655
Q ss_pred CccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCccc
Q 042887 527 PLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGE 573 (628)
Q Consensus 527 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~ 573 (628)
| +..+++|+.|+|++|+|++. ..+..+++|+.|+|++|++++.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 5 78888888888888888854 3578888888888888888764
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=3.1e-19 Score=179.60 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=51.0
Q ss_pred CCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccc-eEEcCCCcCccccchhhhccCCC
Q 042887 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSR-LLDLSGNLLGGSIPLEVGNLRNL 488 (628)
Q Consensus 410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~-~L~Ls~N~l~~~~~~~~~~l~~L 488 (628)
++|+.+++++|+++...+..|.++++|+.+++.+| ++...+..|.+|.+| + .+++.+ .++.+.+..|.++++|
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L----~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL----AGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC----CEEEEECT-TCCEECTTTTTTCTTE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc----cEEEEEcc-cceEEchhhhhCCccC
Confidence 44444444444444444444444444555555444 444444445555444 4 445544 4444444555555555
Q ss_pred CEeeCcCCcCcccCCccccCCCCCCeEE
Q 042887 489 AEFDLSENHFSNEIPVTLSACTTLEYLH 516 (628)
Q Consensus 489 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 516 (628)
+.+++++|+++...+..|.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555555555555555555555555554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=8.6e-20 Score=177.05 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=127.2
Q ss_pred CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI 238 (628)
Q Consensus 159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~ 238 (628)
.++.++..+++++|.+++.. .+..+++|++|++++|.++. ++ .++.+++|++|+|++|.+++..+ +..+++|++
T Consensus 16 ~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 16 PGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 34566777788888877543 57778888888888888874 44 67788888888888888875433 788888888
Q ss_pred EEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCc
Q 042887 239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNN 318 (628)
Q Consensus 239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~ 318 (628)
|++++|+++ .+|.... ++|+.|++++|++++. ..++.+++|++|++++|++++.. .+..+++|++|++++|+
T Consensus 90 L~L~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 90 LSVNRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EECCSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSC
T ss_pred EECCCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCc
Confidence 888888887 4554322 7888888888888854 35778888888888888887652 57778888888888888
Q ss_pred CCCcCCCCccccccccCCCCCceeecccCCcccc
Q 042887 319 LGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV 352 (628)
Q Consensus 319 l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 352 (628)
+++. ..+..+++|+.|++++|.+...
T Consensus 162 i~~~--------~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--------GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--------TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch--------HHhccCCCCCEEeCCCCcccCC
Confidence 8653 3456667777778777776554
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=9.4e-19 Score=162.06 Aligned_cols=154 Identities=14% Similarity=0.251 Sum_probs=119.9
Q ss_pred CCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887 159 LNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI 238 (628)
Q Consensus 159 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~ 238 (628)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56678899999999988 445 5888999999999999775 3347888999999999999998777888888999999
Q ss_pred EEeecccCcccCChhhhhCCCCCcEEecccCc-ccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887 239 ISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNN-FTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317 (628)
Q Consensus 239 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n 317 (628)
|++++|.+++..|..+. .+++|++|++++|. ++. +| .+..+++|++|++++|++++.. .+..+++|++|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 99999988855555554 58888888888887 653 34 5788888888888888887643 5777888888888888
Q ss_pred cCCC
Q 042887 318 NLGT 321 (628)
Q Consensus 318 ~l~~ 321 (628)
++..
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 7653
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=4.8e-19 Score=163.16 Aligned_cols=131 Identities=24% Similarity=0.297 Sum_probs=88.7
Q ss_pred CeEecccCccccccCccccCCCCCCeEecCCcccccccCC-cccCCcchhcccceEEcCCCcCccccchhhhccCCCCEe
Q 042887 413 QGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPS-SLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF 491 (628)
Q Consensus 413 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L 491 (628)
+.+++++|.++ .+|..+. .++++|++++|++++..+. .+..+++| +.|+|++|++++..|..|.++++|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L----~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL----VKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC----CEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC----CEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 56777777776 4454443 2677777777777655543 36666666 667777777776666677777777777
Q ss_pred eCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccC
Q 042887 492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQI 550 (628)
Q Consensus 492 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 550 (628)
+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 77777777666666667777777777777777666666777777777777777776543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.5e-18 Score=160.63 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=75.0
Q ss_pred hccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhc
Q 042887 383 KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMT 462 (628)
Q Consensus 383 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 462 (628)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~------- 109 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLS------- 109 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCT-------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhc-------
Confidence 44455555555555555 223 3555555555555555443 222445555555555555555444444444
Q ss_pred ccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCce-eeeecCccccCCCCCCEEEC
Q 042887 463 LSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNS-FSGSLPLSLKTLKSIKELDL 541 (628)
Q Consensus 463 l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 541 (628)
.+++|++|++++|++++..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++
T Consensus 110 ---------------------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 110 ---------------------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNI 166 (197)
T ss_dssp ---------------------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEEC
T ss_pred ---------------------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEEC
Confidence 44444444444444444444444445555555555554 33 222 3455555555555
Q ss_pred CCCcccccCchhhhcccCCCeEeccCCcCc
Q 042887 542 SRNNLSGQIPKYLENLLFLAYLNLSYNHFE 571 (628)
Q Consensus 542 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~ 571 (628)
++|++++. + .+..+++|++|++++|++.
T Consensus 167 ~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 55555532 2 4555555566666655553
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.5e-18 Score=187.35 Aligned_cols=173 Identities=27% Similarity=0.320 Sum_probs=110.5
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
.|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|+
T Consensus 44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 444455555554432 2 35666677777777776665433 6666777777777777663 22 56667777777777
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
+|++++. ..+..+++| +.|+|++|++++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|+|
T Consensus 118 ~N~l~~l--~~l~~l~~L----~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 118 HNGISDI--NGLVHLPQL----ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp TSCCCCC--GGGGGCTTC----SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCCCCC--ccccCCCcc----CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 7777642 345556655 6677777777653 456677777777777777775544 66777777777777777
Q ss_pred eeecCccccCCCCCCEEECCCCcccccCchh
Q 042887 523 SGSLPLSLKTLKSIKELDLSRNNLSGQIPKY 553 (628)
Q Consensus 523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 553 (628)
++. ..+..+++|+.|+|++|++++.....
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 643 34677777777777777776543333
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=3.9e-19 Score=172.39 Aligned_cols=168 Identities=23% Similarity=0.319 Sum_probs=99.0
Q ss_pred cccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecC
Q 042887 363 KITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLG 442 (628)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 442 (628)
++..+++++|.+++.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3455566666665443 45666677777777776663 23 46666667777777776664433 6666667777777
Q ss_pred CcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCcee
Q 042887 443 FNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSF 522 (628)
Q Consensus 443 ~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 522 (628)
+|++++. |.. .. ++| +.|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++
T Consensus 94 ~N~l~~l-~~~-~~-~~L----~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 94 RNRLKNL-NGI-PS-ACL----SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SSCCSCC-TTC-CC-SSC----CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred CCccCCc-Ccc-cc-Ccc----cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 6666642 221 11 444 5666666666642 2456666666666666666543 2 455566666666666666
Q ss_pred eeecCccccCCCCCCEEECCCCccccc
Q 042887 523 SGSLPLSLKTLKSIKELDLSRNNLSGQ 549 (628)
Q Consensus 523 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 549 (628)
++. ..+..+++|+.|++++|+++..
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 543 4455666666666666666543
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=1.4e-18 Score=174.77 Aligned_cols=284 Identities=13% Similarity=0.088 Sum_probs=164.7
Q ss_pred cCcccEEEccCCccccccchhhhC-CCCCCEEecccCcCc--ccccccccCCCCCCEeecccccCcccCCcCccC-----
Q 042887 161 LLKLEMIDVGDNQLIGKFPDFIAN-FSALEAIDISANMLG--GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWN----- 232 (628)
Q Consensus 161 l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~----- 232 (628)
+.+++.|+++++ +.......+.. +++|+.|||++|++. ...+ +.++.++.+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccc---cCHHHhccccccc
Confidence 345677777754 22222233334 667777777777766 2221 122224445554442 23445555
Q ss_pred ---CCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccc----eeeccccccc
Q 042887 233 ---ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHF----SGQVKIDFNR 305 (628)
Q Consensus 233 ---l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~~~~ 305 (628)
+++|++|+|.+ .++ .|+...|.++++|+.+++++|.++.+.+..|.++.++..+....+.. ..+...+|..
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 66666666666 555 55555555566666666666655555555555555555444443211 1112223333
Q ss_pred CCCCC-EEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHh---ccccccEEEccCCcceeeCchh
Q 042887 306 LSNLS-RLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIAN---LSAKITVIGMGDNQISGTIPSE 381 (628)
Q Consensus 306 l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~ 381 (628)
+..|+ .+.+.. ... .+..+.. ...++..+.+.++-.. .....
T Consensus 175 ~~~L~~~i~~~~------------------------------~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~ 220 (329)
T 3sb4_A 175 GEPLETTIQVGA------------------------------MGK---LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKL 220 (329)
T ss_dssp SCCCEEEEEECT------------------------------TCC---HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHH
T ss_pred ccccceeEEecC------------------------------CCc---HHHHHhhcccCccccceEEEeeeecH-HHHHH
Confidence 33333 222221 100 0011100 0123444444433211 11111
Q ss_pred h-hccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCC-eEecCCcccccccCCcccCCcc
Q 042887 382 I-KNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLN-RLFLGFNNLQGNVPSSLGNCQN 459 (628)
Q Consensus 382 l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~ 459 (628)
+ ..+++|+.+++++|+++.+.+.+|.++++|+.+++.+| ++...+.+|.++++|+ .+++.. .++...+..|.+|++
T Consensus 221 l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 221 IRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp HHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred HHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 2 23678888888888888777778888888888888887 7767778888888888 888887 777777888888888
Q ss_pred hhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887 460 LMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493 (628)
Q Consensus 460 L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 493 (628)
| +.+++++|++..+.+..|.++++|+.++.
T Consensus 299 L----~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 L----RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp E----EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred C----CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8 77888888888777778888888888764
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=6.7e-21 Score=204.62 Aligned_cols=108 Identities=27% Similarity=0.294 Sum_probs=75.2
Q ss_pred ceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887 465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544 (628)
Q Consensus 465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 544 (628)
+.|+|++|++++ +|. ++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+|++ +| .+..+++|+.|+|++|
T Consensus 444 ~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 444 RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 566777777764 444 677777777777777776 566677777777777777777774 45 6677777777777777
Q ss_pred cccccC-chhhhcccCCCeEeccCCcCcccCCCC
Q 042887 545 NLSGQI-PKYLENLLFLAYLNLSYNHFEGEVPRK 577 (628)
Q Consensus 545 ~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~p~~ 577 (628)
+|++.. |..+..+++|+.|++++|++++.+|..
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 777665 677777777777777777777665543
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=3.7e-20 Score=198.80 Aligned_cols=165 Identities=21% Similarity=0.183 Sum_probs=132.8
Q ss_pred eeeCchhhhccCCcCeee-eccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCc
Q 042887 375 SGTIPSEIKNLVNINAFG-VEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSS 453 (628)
Q Consensus 375 ~~~~~~~l~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 453 (628)
.+..|..+..+++|+.|+ ++.|.+. +|..+.+++|.++...+ ..|+.|++++|+|++ +|.
T Consensus 398 ~~~~~~~l~~l~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~- 458 (567)
T 1dce_A 398 LLYEKETLQYFSTLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH- 458 (567)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-
T ss_pred ccCCHHHHHHHHhcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-
Confidence 445667777778888777 6666543 35566677777764332 258899999999985 565
Q ss_pred ccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeec-CccccC
Q 042887 454 LGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSL-PLSLKT 532 (628)
Q Consensus 454 ~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~ 532 (628)
++.+++| +.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+..
T Consensus 459 ~~~l~~L----~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 459 LEQLLLV----THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp GGGGTTC----CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred ccccccC----cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 8888887 88999999998 778899999999999999999996 56 8899999999999999999776 899999
Q ss_pred CCCCCEEECCCCcccccCch---hhhcccCCCeEec
Q 042887 533 LKSIKELDLSRNNLSGQIPK---YLENLLFLAYLNL 565 (628)
Q Consensus 533 l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l 565 (628)
+++|+.|+|++|++++.+|. .+..+++|+.|++
T Consensus 532 l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 532 CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999976553 3455889998875
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=6e-19 Score=195.50 Aligned_cols=181 Identities=24% Similarity=0.298 Sum_probs=81.8
Q ss_pred CchhhhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCC
Q 042887 378 IPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNC 457 (628)
Q Consensus 378 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 457 (628)
.+..+..+++|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+|+ .+|..++++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3445555666666666666665 34444445666666666666666 45555666666666666666666 456566665
Q ss_pred cchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCC-CCCeEECcCceeeeecCccccCCCCC
Q 042887 458 QNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACT-TLEYLHLQGNSFSGSLPLSLKTLKSI 536 (628)
Q Consensus 458 ~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 536 (628)
++| ++|+|++|.|+ .+|..|+.+++|++|+|++|.+++.+|..+..+. .+..|+|++|.+++.+|. .|
T Consensus 293 ~~L----~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l 361 (727)
T 4b8c_D 293 FQL----KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ER 361 (727)
T ss_dssp TTC----SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-
T ss_pred CCC----CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cc
Confidence 555 56666666665 4455566666666666666666655555544321 112355666666655543 23
Q ss_pred CEEECCCC--------cccccCchhhhcccCCCeEeccCCcCcc
Q 042887 537 KELDLSRN--------NLSGQIPKYLENLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 537 ~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 572 (628)
+.|++++| .+.+..+..+..+..++...+++|-+.+
T Consensus 362 ~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 362 RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------------------------------------CCCG
T ss_pred ceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 44445554 3333334444555555666666666653
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=2.4e-17 Score=151.69 Aligned_cols=155 Identities=23% Similarity=0.246 Sum_probs=108.8
Q ss_pred CeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccch-hhhccCCCCEeeCcCCcCcccCCccccCCCCCCeE
Q 042887 437 NRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPL-EVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYL 515 (628)
Q Consensus 437 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 515 (628)
+.+++++|+++ .+|..+.. ++ +.|++++|++++..+. .|..+++|++|+|++|++++..|..|.++++|++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l----~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT----TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC----SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCcC-cCccCCCC--CC----CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 67788888876 55554433 44 6778888888765553 37778888888888888887777778888888888
Q ss_pred ECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccCCCCCCCCCCCcccccCCCCCc
Q 042887 516 HLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEVPRKGVFGNRTGIHLIGNERLC 595 (628)
Q Consensus 516 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~~~c 595 (628)
+|++|++++..+..|.++++|++|+|++|++++..|+.|..+++|++|++++|++++..+.......+....+.++...|
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C 163 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC 163 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCC
Confidence 88888888777777778888888888888888777777888888888888888887766532221122223344455556
Q ss_pred ccC
Q 042887 596 GGL 598 (628)
Q Consensus 596 ~~~ 598 (628)
+..
T Consensus 164 ~~P 166 (192)
T 1w8a_A 164 GAP 166 (192)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=1.8e-17 Score=149.26 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=68.5
Q ss_pred CcccEEEccCCccc-cccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEE
Q 042887 162 LKLEMIDVGDNQLI-GKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIIS 240 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~ 240 (628)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..|..+++|++|++++|.+++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 93 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-------- 93 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH--------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh--------
Confidence 44555555555554 34444455555555555555555433 44445555555555555554334444444
Q ss_pred eecccCcccCChhhhhCCCCCcEEecccCcccccc-cccccCCCCCCEEEcccccceeecc---cccccCCCCCEEEccC
Q 042887 241 LHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSL-PHSFSNASNLQVLDVYKNHFSGQVK---IDFNRLSNLSRLFLSK 316 (628)
Q Consensus 241 L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~~ 316 (628)
+++|++|++++|++++.. +..+..+++|++|++++|.+++..+ ..|..+++|++|++++
T Consensus 94 -----------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 94 -----------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp -----------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred -----------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 445555555555544321 1445555555555555555554433 3455566666666666
Q ss_pred CcCCCc
Q 042887 317 NNLGTE 322 (628)
Q Consensus 317 n~l~~~ 322 (628)
|.+...
T Consensus 157 n~~~~~ 162 (168)
T 2ell_A 157 REDQEA 162 (168)
T ss_dssp TTSCBC
T ss_pred CChhhc
Confidence 655443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=152.28 Aligned_cols=130 Identities=25% Similarity=0.289 Sum_probs=85.8
Q ss_pred CeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEE
Q 042887 437 NRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLH 516 (628)
Q Consensus 437 ~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 516 (628)
+.+++++|.++ .+|..+. +++ +.|++++|+++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l----~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV----TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC----CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC----CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 34555555555 3333332 233 56666666666 4556677777777777777777766666677777777777
Q ss_pred CcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcccC
Q 042887 517 LQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEGEV 574 (628)
Q Consensus 517 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 574 (628)
|++|++++..|..|..+++|++|+|++|+|+...+..|..+++|+.|++++|++.+..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 7777777666666777777777777777777665666777777777777777776543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=6.3e-17 Score=145.61 Aligned_cols=137 Identities=16% Similarity=0.110 Sum_probs=96.2
Q ss_pred CCCCEeecccccCc-ccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEE
Q 042887 210 RSLNYLSISENNFS-CKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVL 288 (628)
Q Consensus 210 ~~L~~L~Ls~N~i~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 288 (628)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|++++..|..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 44555555555554 344555555555666666666555 23 222346666677777777766677778889999999
Q ss_pred Ecccccceeecc-cccccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccc
Q 042887 289 DVYKNHFSGQVK-IDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGV 352 (628)
Q Consensus 289 ~L~~N~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 352 (628)
++++|++++... ..+..+++|++|++++|.++..+.. ....+..+++|+.|++++|.+...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDY---RESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTH---HHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHH---HHHHHHhCccCcEecCCCCChhhc
Confidence 999999987643 6889999999999999999864320 013577889999999999987654
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=8.5e-18 Score=186.27 Aligned_cols=187 Identities=19% Similarity=0.173 Sum_probs=71.6
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
+.++.|+|.+|.+... +.. .|+.++|+.|.|.+ ++++.|.+. ..|+.|..+++|++|+|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 4577888888887753 332 34444555554432 223334433 34445555555555555
Q ss_pred ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321 (628)
Q Consensus 242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 321 (628)
++|.+. .+|..++ .+++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|..+++|++|+|++|.++.
T Consensus 232 s~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp TTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred CCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc
Confidence 555554 4555544 2555555555555555 44555555555555555555555 334455555555555555555543
Q ss_pred cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCch
Q 042887 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPS 380 (628)
Q Consensus 322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 380 (628)
++ ..+..+++|+.|+|++|.+++..+..+.........+++++|.+++.+|.
T Consensus 308 lp-------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 308 LP-------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CC-------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cC-------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 22 22444555555555555555555555544322233345556666555554
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1.1e-15 Score=156.84 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=38.4
Q ss_pred cccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEee
Q 042887 163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLH 242 (628)
Q Consensus 163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~ 242 (628)
.++.+.+.+ .++.+...+|.+. +|+.+++..+ ++.+...+|.+. +|+.+.+.. .++.+.+.+|.++++|+.++++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 344444433 2333444445443 4555555433 443444444442 355555443 3333444444444444444444
Q ss_pred cccCcccCChhhh
Q 042887 243 SNRFEGSLPLNIG 255 (628)
Q Consensus 243 ~n~l~~~~~~~~~ 255 (628)
+|.++ .++...|
T Consensus 189 ~n~l~-~I~~~aF 200 (401)
T 4fdw_A 189 KTKIT-KLPASTF 200 (401)
T ss_dssp TSCCS-EECTTTT
T ss_pred CCcce-EechhhE
Confidence 44444 3443333
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.2e-15 Score=156.55 Aligned_cols=153 Identities=10% Similarity=0.090 Sum_probs=125.0
Q ss_pred cCCcCcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCC
Q 042887 158 RLNLLKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLE 237 (628)
Q Consensus 158 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~ 237 (628)
+.+. +|+.+++..+ ++.+...+|.+. +|+.+++.. .++.+.+.+|.++++|+.+++++|+++.+...+|. ..+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccC
Confidence 4443 6999999876 777777888884 799999986 67778888999999999999999999976666676 58999
Q ss_pred EEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCC
Q 042887 238 IISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKN 317 (628)
Q Consensus 238 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n 317 (628)
.+.+..+ ++ .++...|.++++|+.+++..| ++.+...+|.+ .+|+.+.+ .+.++.+...+|..+++|+.+++.+|
T Consensus 207 ~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 207 EVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp EEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred EEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 9999855 76 788888888999999999875 66677778888 78999998 45677788888888888888888877
Q ss_pred cCC
Q 042887 318 NLG 320 (628)
Q Consensus 318 ~l~ 320 (628)
.+.
T Consensus 282 ~~~ 284 (401)
T 4fdw_A 282 TFN 284 (401)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=9.1e-17 Score=141.41 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=79.1
Q ss_pred CCCCeEecCCcccc-cccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCC
Q 042887 434 TLLNRLFLGFNNLQ-GNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTL 512 (628)
Q Consensus 434 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 512 (628)
++++.|++++|.++ +..|..+..+++| +.|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L----~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEEL----EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTC----CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCC----cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34445555555554 3444444444444 5555555555533 455566666677777777665556666666777
Q ss_pred CeEECcCceeeee-cCccccCCCCCCEEECCCCcccccCc---hhhhcccCCCeEeccC
Q 042887 513 EYLHLQGNSFSGS-LPLSLKTLKSIKELDLSRNNLSGQIP---KYLENLLFLAYLNLSY 567 (628)
Q Consensus 513 ~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~ls~ 567 (628)
++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777777777642 23567777777777777777776555 4677777777777763
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=3.8e-15 Score=153.67 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=78.7
Q ss_pred CcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhh
Q 042887 403 PHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEV 482 (628)
Q Consensus 403 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~ 482 (628)
..+|..+..++.+.+..+... .....|..+..++.+....+.+ ....|.++.+| +.+.+.++ +..+....|
T Consensus 246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L----~~i~l~~~-i~~I~~~aF 316 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSL----TEVKLLDS-VKFIGEEAF 316 (394)
T ss_dssp SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTC----CEEEECTT-CCEECTTTT
T ss_pred cccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccc----cccccccc-cceechhhh
Confidence 344555555555555544332 4444555555555555544432 22344555555 44455433 443445556
Q ss_pred hccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCe
Q 042887 483 GNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAY 562 (628)
Q Consensus 483 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 562 (628)
.++.+|+.+++.++ ++......|.++++|+.+++..| ++.....+|.++++|+.+++..+ ++ .+...|.+.++|+.
T Consensus 317 ~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 317 ESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred cCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 66666666666533 54445556666666766666655 55455566666667777666543 22 22345555555544
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.1e-16 Score=140.83 Aligned_cols=126 Identities=17% Similarity=0.271 Sum_probs=62.7
Q ss_pred CCCEEecccCcCc-ccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChhhhhCCCCCcEEe
Q 042887 187 ALEAIDISANMLG-GRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLS 265 (628)
Q Consensus 187 ~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 265 (628)
+|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+. .+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCEEE
Confidence 3444444444443 33344444444444444444444432 3444455555555555555432333222 255555555
Q ss_pred cccCccccc-ccccccCCCCCCEEEcccccceeecc---cccccCCCCCEEEcc
Q 042887 266 VGQNNFTGS-LPHSFSNASNLQVLDVYKNHFSGQVK---IDFNRLSNLSRLFLS 315 (628)
Q Consensus 266 L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~---~~~~~l~~L~~L~L~ 315 (628)
+++|++++. .+..++.+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555542 23455666666666666666655444 345566666666654
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=144.00 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=82.8
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n 244 (628)
+.+++++|+++. +|..+ .++|++|++++|.++ .+|..|..+++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567888887773 44433 257777777777776 55677777777777777777777666667777777777777777
Q ss_pred cCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccce
Q 042887 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFS 296 (628)
Q Consensus 245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 296 (628)
.++ .++...+..+++|++|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 776 444444444666666666666666544445555555555555555554
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=3.5e-16 Score=142.05 Aligned_cols=111 Identities=23% Similarity=0.239 Sum_probs=67.1
Q ss_pred ceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887 465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544 (628)
Q Consensus 465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 544 (628)
+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 31 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC
Confidence 45555555555444445555666666666666666554555566666666666666666555555566666666666666
Q ss_pred cccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887 545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 575 (628)
++++..+..+..+++|++|++++|++++..|
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 111 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6665555555666666666666666665544
No 135
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.66 E-value=7e-17 Score=160.74 Aligned_cols=94 Identities=19% Similarity=0.301 Sum_probs=77.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.+|++++|||||++++++ ++.+.
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~-----~~~~~ 97 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESF-----EENGS 97 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-----EETTE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEE-----EECCE
Confidence 478999999999999999999999999999999997643 34457899999999999999999999995 45789
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.|+|||||+||+|.+++....
T Consensus 98 ~yiVmEy~~gg~L~~~i~~~~ 118 (350)
T 4b9d_A 98 LYIVMDYCEGGDLFKRINAQK 118 (350)
T ss_dssp EEEEEECCTTCBHHHHHHHTT
T ss_pred EEEEEeCCCCCcHHHHHHHcC
Confidence 999999999999999997543
No 136
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.65 E-value=9.5e-17 Score=159.49 Aligned_cols=92 Identities=22% Similarity=0.337 Sum_probs=83.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.+.|+..+.||+|+||.||+|++..+|+.||||+++.......+.+.+|+.+|++++|||||++++++. +.+..|
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~ 147 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELW 147 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hHhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEE
Confidence 356999999999999999999999999999999998766666678999999999999999999999954 478999
Q ss_pred eeecccccCCchhhhhc
Q 042887 127 LIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~ 143 (628)
+|||||+||+|.+++..
T Consensus 148 ivmEy~~gg~L~~~l~~ 164 (346)
T 4fih_A 148 VVMEFLEGGALTDIVTH 164 (346)
T ss_dssp EEECCCTTEEHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHc
Confidence 99999999999998864
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.1e-16 Score=139.99 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=90.8
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~ 243 (628)
.+.+++++|+++. +|..+ .++|++|++++|++++..+..|+.+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4677888888774 34332 36788888888888766666777788888888888887765566677777777777777
Q ss_pred ccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeec
Q 042887 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQV 299 (628)
Q Consensus 244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 299 (628)
|.++ .+|...+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 7777 455555445677777777777776555555566666666666666665433
No 138
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.65 E-value=8.5e-17 Score=157.35 Aligned_cols=93 Identities=18% Similarity=0.319 Sum_probs=83.0
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
++|++.+.||+|+||+||+|++..+|+.||||++++. .....+.+.+|+++|++++|||||+++++ +++.+.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~-----~~~~~~ 106 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFT-----FQDDEK 106 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEE-----EECSSE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEE-----EEeCCE
Confidence 5799999999999999999999999999999999764 23445779999999999999999999999 456889
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.|+|||||+||+|.+++.+.+
T Consensus 107 ~yivmEy~~gG~L~~~i~~~~ 127 (311)
T 4aw0_A 107 LYFGLSYAKNGELLKYIRKIG 127 (311)
T ss_dssp EEEEECCCTTEEHHHHHHHHS
T ss_pred EEEEEecCCCCCHHHHHHHcC
Confidence 999999999999999997643
No 139
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.64 E-value=1.5e-16 Score=155.99 Aligned_cols=94 Identities=29% Similarity=0.502 Sum_probs=80.0
Q ss_pred hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
+++|.+.+.||+|+||.||+|++. .+++.||||+++.......+.|.+|+++|++++|||||+++++|.+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~----- 86 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVE----- 86 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEee-----
Confidence 467889999999999999999975 3578899999987666667889999999999999999999999653
Q ss_pred cceeeeeecccccCCchhhhhccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.+..|+|||||++|+|.+++...+
T Consensus 87 ~~~~~lV~Ey~~~G~L~~~l~~~~ 110 (299)
T 4asz_A 87 GDPLIMVFEYMKHGDLNKFLRAHG 110 (299)
T ss_dssp SSSEEEEEECCTTCBHHHHHHHTS
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcC
Confidence 678999999999999999997654
No 140
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=160.90 Aligned_cols=92 Identities=22% Similarity=0.337 Sum_probs=83.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.+.|++.+.||+|+||.||+|++..+|+.||||++........+.+.+|+.+|++++|||||++++++. +.+..|
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~-----~~~~~~ 224 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL-----VGDELW 224 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEE-----ECCEEE
Confidence 457999999999999999999999999999999998766666678999999999999999999999954 478999
Q ss_pred eeecccccCCchhhhhc
Q 042887 127 LIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~ 143 (628)
+|||||+||+|.+++..
T Consensus 225 iVmEy~~gG~L~~~i~~ 241 (423)
T 4fie_A 225 VVMEFLEGGALTDIVTH 241 (423)
T ss_dssp EEEECCTTEEHHHHHHH
T ss_pred EEEeCCCCCcHHHHHhc
Confidence 99999999999998864
No 141
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=155.26 Aligned_cols=95 Identities=22% Similarity=0.457 Sum_probs=81.8
Q ss_pred hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
+++|.+.+.||+|+||.||+|++. .+++.||||+++.......+.|.+|+++|++++|||||+++++|.+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~----- 114 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTE----- 114 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----
T ss_pred HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----
Confidence 456778889999999999999975 3578899999987666667889999999999999999999999754
Q ss_pred cceeeeeecccccCCchhhhhcccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
....|+|||||++|+|.+++.....
T Consensus 115 ~~~~~lV~Ey~~~G~L~~~l~~~~~ 139 (329)
T 4aoj_A 115 GRPLLMVFEYMRHGDLNRFLRSHGP 139 (329)
T ss_dssp SSSEEEEEECCTTCBHHHHHHTSSC
T ss_pred CCEEEEEEEcCCCCcHHHHHHhcCc
Confidence 6789999999999999999986653
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=4.2e-16 Score=141.27 Aligned_cols=133 Identities=20% Similarity=0.139 Sum_probs=81.6
Q ss_pred ccCCCCCCeEecCCcccccccCCcccCCc-chhcccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccC
Q 042887 430 LGNLTLLNRLFLGFNNLQGNVPSSLGNCQ-NLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSA 508 (628)
Q Consensus 430 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 508 (628)
+..+++|+.|++++|+++. +|. +..+. +| +.|++++|.+++. ..+..+++|++|++++|.+++..+..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L----~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQF----DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCC----SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCC----CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc
Confidence 3344455555555555542 222 22222 34 5556666665543 45666667777777777776554455567
Q ss_pred CCCCCeEECcCceeeeecCc--cccCCCCCCEEECCCCcccccCch----hhhcccCCCeEeccCCcCcc
Q 042887 509 CTTLEYLHLQGNSFSGSLPL--SLKTLKSIKELDLSRNNLSGQIPK----YLENLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 509 l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~ls~N~l~~ 572 (628)
+++|++|++++|+++ .+|. .+..+++|+.|++++|+++. .|. .+..+++|+.||+++|.+..
T Consensus 87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 777777777777775 3444 66777777888888887773 444 37777888888888877654
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=3.3e-14 Score=146.59 Aligned_cols=318 Identities=11% Similarity=0.044 Sum_probs=189.4
Q ss_pred cccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecccCcccCChh
Q 042887 174 LIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSNRFEGSLPLN 253 (628)
Q Consensus 174 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 253 (628)
++.+...+|.++++|+.+.+.. .++.+...+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++ .+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 3334444555555565555543 244444555555555665555433 44344455555555555444332 22 23333
Q ss_pred hhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccccccc
Q 042887 254 IGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDFLTLL 333 (628)
Q Consensus 254 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 333 (628)
.|.+...++..... ....+...+|.++++|+.+.+.++. ..+....|..+++|+.+.+..+ ++.
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~------------ 198 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKI------------ 198 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCE------------
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceE------------
Confidence 33322222211111 1111233345555555555554332 2244444444444444444332 111
Q ss_pred cCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCCCCCC
Q 042887 334 TNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGELKNLQ 413 (628)
Q Consensus 334 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 413 (628)
+...+|.++..|+.+.+..+... +.+.+....+|+
T Consensus 199 -------------------------------------------I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~ 233 (394)
T 4fs7_A 199 -------------------------------------------IRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK 233 (394)
T ss_dssp -------------------------------------------ECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred -------------------------------------------eCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence 12233444455555544443322 122333445777
Q ss_pred eEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEeeC
Q 042887 414 GLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDL 493 (628)
Q Consensus 414 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 493 (628)
.+.+..+ ++......|..+..++.+.+..+... .....|..+..+ +.+....+.+ ....|.++.+|+.+.+
T Consensus 234 ~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l----~~~~~~~~~i---~~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 234 NIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL----KKVIYGSVIV---PEKTFYGCSSLTEVKL 304 (394)
T ss_dssp EEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC----CEEEECSSEE---CTTTTTTCTTCCEEEE
T ss_pred eEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccccc----ceeccCceee---cccccccccccccccc
Confidence 7777643 33355667888999999999887554 677788888888 5666665543 3456888999999999
Q ss_pred cCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCC
Q 042887 494 SENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYN 568 (628)
Q Consensus 494 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 568 (628)
.++ ++......|.++++|+.+++..+ ++.....+|.++.+|+.+++..| ++.....+|.++++|+.+++..+
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 765 66567788999999999999865 77677889999999999999887 77677889999999999999755
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1.1e-17 Score=154.88 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=117.5
Q ss_pred cCcccEEEccCCccccccch------hhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCC
Q 042887 161 LLKLEMIDVGDNQLIGKFPD------FIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNIS 234 (628)
Q Consensus 161 l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~ 234 (628)
...++.++++.+.+.+..|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34566667777777666665 88899999999999999885 55 8888899999999999988 5777777788
Q ss_pred CCCEEEeecccCcccCChhhhhCCCCCcEEecccCccccccc-ccccCCCCCCEEEcccccceeecccc----------c
Q 042887 235 SLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLP-HSFSNASNLQVLDVYKNHFSGQVKID----------F 303 (628)
Q Consensus 235 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~----------~ 303 (628)
+|++|++++|.++ .+| .+. .+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+.. +
T Consensus 94 ~L~~L~L~~N~l~-~l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 94 TLEELWISYNQIA-SLS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HCSEEEEEEEECC-CHH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cCCEEECcCCcCC-cCC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 8999999999988 455 333 48889999999998885443 46888888999999999887665542 6
Q ss_pred ccCCCCCEEEccCCcCC
Q 042887 304 NRLSNLSRLFLSKNNLG 320 (628)
Q Consensus 304 ~~l~~L~~L~L~~n~l~ 320 (628)
..+++|+.|| +|.++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 6778888776 55554
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.4e-15 Score=137.80 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred CcCcccEEEccCCccccccchhhhCC-CCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCE
Q 042887 160 NLLKLEMIDVGDNQLIGKFPDFIANF-SALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEI 238 (628)
Q Consensus 160 ~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~ 238 (628)
++.+|+.|++++|+++.. |. +..+ ++|++|++++|.+++. ..|+.+++|++|++++|.+++..+..|..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345566666666665532 33 2222 2555555555555543 34555555555555555555333333345555555
Q ss_pred EEeecccCcccCCh-hhhhCCCCCcEEecccCccc
Q 042887 239 ISLHSNRFEGSLPL-NIGFNIPNVNFLSVGQNNFT 272 (628)
Q Consensus 239 L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~N~l~ 272 (628)
|++++|.++ .+|. ..+..+++|+.|++++|.++
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 555555554 3333 11122444444444444443
No 146
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.58 E-value=1.4e-15 Score=146.59 Aligned_cols=93 Identities=29% Similarity=0.391 Sum_probs=76.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++++.. ....+.+.+|+++|++++|||||++++++ ++.+
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~-----~~~~ 86 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVI-----KSKD 86 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EECC
Confidence 468999999999999999999999999999999997542 33456799999999999999999999994 5588
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..|+||||| +|++.+++.+..
T Consensus 87 ~~~ivmEy~-~g~L~~~l~~~~ 107 (275)
T 3hyh_A 87 EIIMVIEYA-GNELFDYIVQRD 107 (275)
T ss_dssp EEEEEEECC-CEEHHHHHHHSC
T ss_pred EEEEEEeCC-CCCHHHHHHHcC
Confidence 999999999 679999987643
No 147
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.57 E-value=2.1e-15 Score=148.15 Aligned_cols=98 Identities=18% Similarity=0.350 Sum_probs=79.3
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecc-------c
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-------F 119 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-------~ 119 (628)
++|++.+.||+|+||+||+|+++.+|+.||||+++... ....+.+.+|+.+|++++|||||++++++.+.+ .
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 46899999999999999999999999999999997654 334567999999999999999999999876411 1
Q ss_pred cccceeeeeecccccCCchhhhhccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
......|+|||||++|+|.+++....
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~ 110 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRC 110 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCC
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcC
Confidence 12345799999999999999997543
No 148
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=2.6e-15 Score=146.12 Aligned_cols=93 Identities=29% Similarity=0.408 Sum_probs=78.7
Q ss_pred CcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887 51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI 128 (628)
Q Consensus 51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv 128 (628)
++.+.||+|+||.||+|.+..+++.||+|.+.... ....+.|.+|+++|++++|||||++++++.+. .......|+|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence 66778999999999999999999999999997542 34457799999999999999999999986531 1234678999
Q ss_pred ecccccCCchhhhhcc
Q 042887 129 YEYMKCGSSEDWMHQS 144 (628)
Q Consensus 129 ~e~~~~g~L~~~l~~~ 144 (628)
||||++|+|.+++.+.
T Consensus 108 mEy~~gg~L~~~l~~~ 123 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRF 123 (290)
T ss_dssp EECCCSCBHHHHHHHH
T ss_pred EeCCCCCCHHHHHHhc
Confidence 9999999999999754
No 149
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.57 E-value=2.2e-15 Score=148.36 Aligned_cols=94 Identities=22% Similarity=0.365 Sum_probs=77.6
Q ss_pred hCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
..++++.+.||+|+||.||+|++. .+++.||||+++... ....+.|.+|+.+|++++|||||+++++|.+
T Consensus 25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~---- 100 (308)
T 4gt4_A 25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTK---- 100 (308)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEE----
Confidence 345677889999999999999974 356889999997543 3345789999999999999999999999754
Q ss_pred ccceeeeeecccccCCchhhhhccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
....++|||||++|+|.+++....
T Consensus 101 -~~~~~lV~Ey~~~G~L~~~L~~~~ 124 (308)
T 4gt4_A 101 -DQPLSMIFSYCSHGDLHEFLVMRS 124 (308)
T ss_dssp -SSSCEEEEECCSSCBHHHHHHTTC
T ss_pred -CCEEEEEEEcCCCCcHHHHHHhhC
Confidence 678899999999999999997654
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=3.4e-17 Score=151.69 Aligned_cols=161 Identities=24% Similarity=0.290 Sum_probs=86.6
Q ss_pred hhccCCcCeeeeccccccccCCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchh
Q 042887 382 IKNLVNINAFGVEYNQLTGTIPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLM 461 (628)
Q Consensus 382 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 461 (628)
+.....++.++++.+.+.+..|. ++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L- 72 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL- 72 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-
T ss_pred HHhcccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-
Confidence 44555666666666666554443 00 111244445555555555555543 33 44444444
Q ss_pred cccceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecC-ccccCCCCCCEEE
Q 042887 462 TLSRLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLP-LSLKTLKSIKELD 540 (628)
Q Consensus 462 ~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ 540 (628)
+.|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|+
T Consensus 73 ---~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 73 ---RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp ---CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred ---CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 45555555554 344445555566666666666654 22 45556666666666666653222 3556666667777
Q ss_pred CCCCcccccCch----------hhhcccCCCeEeccCCcCc
Q 042887 541 LSRNNLSGQIPK----------YLENLLFLAYLNLSYNHFE 571 (628)
Q Consensus 541 Ls~N~l~~~~~~----------~~~~l~~L~~L~ls~N~l~ 571 (628)
+++|++++..|. .+..+++|+.|| +|.++
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777766654443 366777777776 55554
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.3e-14 Score=130.41 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=58.0
Q ss_pred ceEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCC
Q 042887 465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRN 544 (628)
Q Consensus 465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 544 (628)
+.+++++|+++. +|..+ .++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 345555555542 33333 245555555555555555555555555555555555555444444555555555555555
Q ss_pred cccccCchhhhcccCCCeEeccCCcCcccCC
Q 042887 545 NLSGQIPKYLENLLFLAYLNLSYNHFEGEVP 575 (628)
Q Consensus 545 ~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~p 575 (628)
+|++..++.|..+++|++|++++|++++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 5555444455555555555555555554443
No 152
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.54 E-value=3.1e-15 Score=148.13 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=77.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.+.|++.++||+|+||.||+|+++.+|+.||||+++.... ..+|+.+|++++|||||++++++. +....|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~-----~~~~~~ 126 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVR-----EGPWVN 126 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEE-----ECCEEE
Confidence 4567888899999999999999999999999999975422 357999999999999999999954 478899
Q ss_pred eeecccccCCchhhhhccc
Q 042887 127 LIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~ 145 (628)
+|||||+||+|.+++.+.+
T Consensus 127 ivmEy~~gg~L~~~l~~~~ 145 (336)
T 4g3f_A 127 IFMELLEGGSLGQLIKQMG 145 (336)
T ss_dssp EEECCCTTCBHHHHHHHHS
T ss_pred EEEeccCCCcHHHHHHHcC
Confidence 9999999999999997543
No 153
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.54 E-value=1.3e-15 Score=149.00 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=74.3
Q ss_pred CCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
++|++.+.||+|+||+||+|++. .+++.||+|++++.. .....++.+|+++|++++|||||++++++ ++.
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~-----~~~ 98 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAF-----QTE 98 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEE-----EET
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEE-----EEC
Confidence 46999999999999999999974 467899999997642 23345788999999999999999999995 457
Q ss_pred ceeeeeecccccCCchhhhhccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
+..|+|||||+||+|.+++.+..
T Consensus 99 ~~~~ivmEy~~gg~L~~~l~~~~ 121 (304)
T 3ubd_A 99 GKLYLILDFLRGGDLFTRLSKEV 121 (304)
T ss_dssp TEEEEEECCCTTCEEHHHHHHHC
T ss_pred CEEEEEEEcCCCCCHHHHHHhcC
Confidence 89999999999999999997643
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=8.8e-13 Score=135.89 Aligned_cols=154 Identities=11% Similarity=0.083 Sum_probs=82.7
Q ss_pred ccCCcC-cccEEEccCCccccccchhhhCCCCCCEEecccCc---CcccccccccCCCCCCEeecccccCcccCCcCccC
Q 042887 157 QRLNLL-KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANM---LGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWN 232 (628)
Q Consensus 157 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~ 232 (628)
.+.+.. .|+.+.+..+ ++.+...+|.++++|+.+.++.|. ++.+...+|..+.+|+.+.+..+ ++.+...+|..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 344442 4666666543 555556666666666666666543 44445556666666666666543 44355556666
Q ss_pred CCCCCEEEeecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEE
Q 042887 233 ISSLEIISLHSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRL 312 (628)
Q Consensus 233 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 312 (628)
+.+|+.+.+..+ ++ .++...|....+|+.+.+..+ ++.+....|.+ .+|+.+.+..+- ..+...+|..+.+++..
T Consensus 136 c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 136 CEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTI 210 (394)
T ss_dssp CTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEE
T ss_pred hcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhcccccee
Confidence 666666666543 22 455555555566666665543 33344444443 445555555432 22444455555555555
Q ss_pred EccCC
Q 042887 313 FLSKN 317 (628)
Q Consensus 313 ~L~~n 317 (628)
....+
T Consensus 211 ~~~~~ 215 (394)
T 4gt6_A 211 TSDSE 215 (394)
T ss_dssp EECCS
T ss_pred ccccc
Confidence 44433
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=2.7e-14 Score=128.75 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=55.9
Q ss_pred eEEcCCCcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCc
Q 042887 466 LLDLSGNLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNN 545 (628)
Q Consensus 466 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 545 (628)
.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4455555554 3333332 455555555555555545555555555555555555554444444555555555555555
Q ss_pred ccccCchhhhcccCCCeEeccCCcCcccC
Q 042887 546 LSGQIPKYLENLLFLAYLNLSYNHFEGEV 574 (628)
Q Consensus 546 l~~~~~~~~~~l~~L~~L~ls~N~l~~~~ 574 (628)
|++..+..|..+++|++|++++|++....
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 55444444555555555555555555443
No 156
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.53 E-value=3.4e-15 Score=146.36 Aligned_cols=97 Identities=28% Similarity=0.414 Sum_probs=80.1
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
|+...+++++.+.||+|+||+||+|++. ..||||+++... ....+.|.+|+.+|++++|||||++++++.
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~----- 102 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT----- 102 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred cEEcHHHeEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----
Confidence 4455678889999999999999999874 359999987543 345578999999999999999999999864
Q ss_pred ccceeeeeecccccCCchhhhhcccccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
.+..|+|||||++|+|.+++......+
T Consensus 103 -~~~~~iVmEy~~gGsL~~~l~~~~~~l 129 (307)
T 3omv_A 103 -KDNLAIVTQWCEGSSLYKHLHVQETKF 129 (307)
T ss_dssp -SSSCEEEEECCSSCBHHHHHHTSCCCC
T ss_pred -CCeEEEEEEcCCCCCHHHHHhhcCCCC
Confidence 345799999999999999997655444
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=3e-12 Score=131.83 Aligned_cols=337 Identities=11% Similarity=0.154 Sum_probs=222.3
Q ss_pred cccccchhhhCCC-CCCEEecccCcCcccccccccCCCCCCEeeccccc---CcccCCcCccCCCCCCEEEeecccCccc
Q 042887 174 LIGKFPDFIANFS-ALEAIDISANMLGGRIPDSLCQLRSLNYLSISENN---FSCKLPLSIWNISSLEIISLHSNRFEGS 249 (628)
Q Consensus 174 l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---i~~~~p~~~~~l~~L~~L~L~~n~l~~~ 249 (628)
++.+...+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.++.|. ++.+...+|.++.+|+.+.+..+ ++ .
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence 4555567888885 6999999854 777888999999999999998874 77677888999999999888765 55 6
Q ss_pred CChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCCcCCCCccc
Q 042887 250 LPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGTESTSDLDF 329 (628)
Q Consensus 250 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 329 (628)
++...|....+|+.+.+..+ +..+....|..+.+|+.+.+..+ ++.+...+|.. .+|+.+.+..+-. .+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~----- 198 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGT----- 198 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECT-----
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-cccc-----
Confidence 88888888999999999755 45477788999999999999865 56677778865 6799998876532 2221
Q ss_pred cccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeeccccccccCCcCCCCC
Q 042887 330 LTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGTIPHAIGEL 409 (628)
Q Consensus 330 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 409 (628)
..+..+..++......+......-..+. .+.........+.....+..+.+. +.+......+|.++
T Consensus 199 -~af~~c~~l~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c 264 (394)
T 4gt6_A 199 -NAFSECFALSTITSDSESYPAIDNVLYE------------KSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSC 264 (394)
T ss_dssp -TTTTTCTTCCEEEECCSSSCBSSSCEEE------------ECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTC
T ss_pred -chhhhccccceecccccccccccceeec------------ccccccccccccccccccceEEcC-CcceEcccceeeec
Confidence 2345566676666554433221100000 000000000011112223333332 23333455678888
Q ss_pred CCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCC
Q 042887 410 KNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLA 489 (628)
Q Consensus 410 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~ 489 (628)
.+|+.+.+..+... .....|.++++|+.+.+. +.++......|.+|.+| +.+++..+ ++.+....|.++.+|+
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L----~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISL----KSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTC----CEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCc----CEEEeCCc-ccEehHhHhhCCCCCC
Confidence 88888888765443 566677888888888885 45665667778888888 77788754 5556667888888888
Q ss_pred EeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 490 EFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 490 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
.+.+..+ ++......|.++++|+.+++.++.... ..+....+|+.+.+..|.+.
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 8888654 665666788888899998888876541 45667778888888776654
No 158
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.51 E-value=8.5e-15 Score=146.88 Aligned_cols=103 Identities=18% Similarity=0.344 Sum_probs=85.6
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEEECCC-----CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCC-CCcccccc
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGET-----GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRH-RNLIKIIT 112 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~-----~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h-~nIv~l~~ 112 (628)
...|+.++++|++.+.||+|+||+||+|.+..+ ++.||||.+.... ....+.|.+|+.+|+++.| ||||++++
T Consensus 56 ~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g 135 (353)
T 4ase_A 56 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 135 (353)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred CcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 346778889999999999999999999998654 3579999997643 3345679999999999975 99999999
Q ss_pred eeeeccccccceeeeeecccccCCchhhhhcccc
Q 042887 113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
+|.. .....|+|||||++|+|.++++....
T Consensus 136 ~~~~----~~~~~~iV~Ey~~~G~L~~~L~~~~~ 165 (353)
T 4ase_A 136 ACTK----PGGPLMVIVEFCKFGNLSTYLRSKRN 165 (353)
T ss_dssp EECC----TTSCCEEEEECCTTEEHHHHHHHTGG
T ss_pred EEEe----cCCEEEEEEEcCCCCCHHHHHHhccc
Confidence 9743 34678999999999999999987654
No 159
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.50 E-value=1.7e-14 Score=154.92 Aligned_cols=99 Identities=21% Similarity=0.398 Sum_probs=87.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|+++.+|+.||+|++........+.+.+|+.+|+.++|||||+++++ +++....|
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~-----~~~~~~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA-----FEDDNEMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEE-----EECSSEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEE-----EEECCEEE
Confidence 3679999999999999999999999999999999987665566788999999999999999999999 45588999
Q ss_pred eeecccccCCchhhhhcccccccc
Q 042887 127 LIYEYMKCGSSEDWMHQSNDKLEA 150 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~~~~~ 150 (628)
+|||||+||+|.+++.+....+++
T Consensus 231 iv~E~~~gg~L~~~i~~~~~~l~e 254 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADEHNKMSE 254 (573)
T ss_dssp EEEECCCCCBHHHHHTCTTSCEEH
T ss_pred EEEeecCCCcHHHHHHHhCCCCCH
Confidence 999999999999999765544543
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=7.7e-14 Score=125.27 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=55.2
Q ss_pred ccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887 164 LEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 164 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~ 243 (628)
.+.+|+++|+++. +|..+ .++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666653 33333 25566666666666655555555566666666666655544444455555555555555
Q ss_pred ccCcccCChhhhhCCCCCcEEecccCccc
Q 042887 244 NRFEGSLPLNIGFNIPNVNFLSVGQNNFT 272 (628)
Q Consensus 244 n~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 272 (628)
|+++ .+|...+..+++|++|+|++|.++
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555 344333333444444444444443
No 161
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.49 E-value=2.2e-14 Score=146.54 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=81.6
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeee-ccccccce
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFKGVDF 124 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~~~~ 124 (628)
++|++.+.||+|+||+||+|++..+|+.||||+++... ....+++.+|+.+|++++|||||++++++.. ..+.+...
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999999999999999997543 3345678999999999999999999998654 22445678
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.|+|||||+ |+|.+++.+..
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~ 153 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ 153 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS
T ss_pred EEEEEeCCC-CCHHHHHHhcC
Confidence 999999996 67988886543
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.3e-13 Score=124.31 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=58.7
Q ss_pred cEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeecc
Q 042887 165 EMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHSN 244 (628)
Q Consensus 165 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~n 244 (628)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56666766665 3444332 56666666666666555666666666666666666666444444555666666666666
Q ss_pred cCcccCChhhhhCCCCCcEEecccCccc
Q 042887 245 RFEGSLPLNIGFNIPNVNFLSVGQNNFT 272 (628)
Q Consensus 245 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 272 (628)
+++ .+|...+..+++|++|+|++|.+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 555 444443334555555555555444
No 163
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.44 E-value=7.1e-14 Score=137.94 Aligned_cols=93 Identities=25% Similarity=0.356 Sum_probs=72.3
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKAL 127 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~l 127 (628)
++|.+.+.||+|+||.||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||++++++.+.+ ......|+
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~-~~~~~~~l 78 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWL 78 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecC-CCceEEEE
Confidence 4578889999999999999998 689999999875432 1122345566667889999999999986511 12246899
Q ss_pred eecccccCCchhhhhcc
Q 042887 128 IYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 128 v~e~~~~g~L~~~l~~~ 144 (628)
|||||++|+|.++++..
T Consensus 79 V~Ey~~~gsL~~~l~~~ 95 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNRY 95 (303)
T ss_dssp EEECCTTCBHHHHHHHC
T ss_pred EecCCCCCcHHHHHHhC
Confidence 99999999999999754
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=3.2e-14 Score=144.56 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=27.0
Q ss_pred CCcCeeeeccccccccCCcCCC-----CCCCCCeEecccCccccccCccc-cCCCCCCeEecCCcccc
Q 042887 386 VNINAFGVEYNQLTGTIPHAIG-----ELKNLQGLALVRNSLRGTIPDTL-GNLTLLNRLFLGFNNLQ 447 (628)
Q Consensus 386 ~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 447 (628)
+.|+.|++++|.++......+. ..++|++|+|++|.++......+ ..+++|+.|++++|.++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 4455556665555432222211 12455555555555543222222 12334455555555544
No 165
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.39 E-value=2.2e-13 Score=145.46 Aligned_cols=94 Identities=26% Similarity=0.370 Sum_probs=77.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHH---HHHHhhcCCCCcccccceeeecccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTE---CEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E---~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
.++|++.++||+|+||+||+|+++.+|+.||||++++.. ......+.+| +.+++.++|||||+++++ |+
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~-----f~ 262 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYA-----FH 262 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEE-----EE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEE-----EE
Confidence 367999999999999999999999999999999997642 2222333444 566777899999999999 55
Q ss_pred ccceeeeeecccccCCchhhhhccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
+....|+|||||+||+|.+++.+.+
T Consensus 263 ~~~~lylVmEy~~GGdL~~~l~~~~ 287 (689)
T 3v5w_A 263 TPDKLSFILDLMNGGDLHYHLSQHG 287 (689)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHHHC
T ss_pred ECCEEEEEEecCCCCcHHHHHHhcC
Confidence 6889999999999999999997643
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=1.5e-14 Score=146.95 Aligned_cols=172 Identities=11% Similarity=0.145 Sum_probs=99.2
Q ss_pred CCCCCEEecccCcCcccccccccCC-----CCCCEeecccccCcccCCcCc-cCCCCCCEEEeecccCcccCChhhh---
Q 042887 185 FSALEAIDISANMLGGRIPDSLCQL-----RSLNYLSISENNFSCKLPLSI-WNISSLEIISLHSNRFEGSLPLNIG--- 255 (628)
Q Consensus 185 l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~i~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~--- 255 (628)
+++|+.|+|++|.++......+... ++|++|+|++|.++......+ ..+++|++|+|++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678899999998876554444332 688888888888765433333 2356778888888877633222222
Q ss_pred -hCCCCCcEEecccCccccc----ccccccCCCCCCEEEcccccceeec----ccccccCCCCCEEEccCCcCCCcCCCC
Q 042887 256 -FNIPNVNFLSVGQNNFTGS----LPHSFSNASNLQVLDVYKNHFSGQV----KIDFNRLSNLSRLFLSKNNLGTESTSD 326 (628)
Q Consensus 256 -~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~ 326 (628)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.|+... ...+...++|++|+|++|.++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~- 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL- 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH-
Confidence 1246677777777777642 2333456667777777777765432 23344555666666666666532211
Q ss_pred ccccccccCCCCCceeecccCCcccccchHHH
Q 042887 327 LDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIA 358 (628)
Q Consensus 327 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 358 (628)
.....+..+++|+.|++++|.++......+.
T Consensus 230 -~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 230 -ALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp -HHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred -HHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 1122233445555555555555544444433
No 167
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.36 E-value=6.3e-13 Score=134.19 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=77.5
Q ss_pred HHhCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~ 120 (628)
...+.|++.+.||+|+||.||+|+++ .+++.||+|.+.... ...++.+|+++|+.+ .|||||++++++ +
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~-----~ 90 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCF-----R 90 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEE-----E
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEE-----E
Confidence 44578999999999999999999874 457889999986543 345688999999998 599999999984 4
Q ss_pred ccceeeeeecccccCCchhhhh
Q 042887 121 GVDFKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~ 142 (628)
+.+..|+|||||++|+|.+++.
T Consensus 91 ~~~~~~lvmE~~~g~~L~~~~~ 112 (361)
T 4f9c_A 91 KNDHVVIAMPYLEHESFLDILN 112 (361)
T ss_dssp ETTEEEEEEECCCCCCHHHHHT
T ss_pred ECCEEEEEEeCCCcccHHHHHc
Confidence 5789999999999999999884
No 168
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.35 E-value=1.5e-13 Score=142.67 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=85.6
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSID 118 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~ 118 (628)
+.....++|++.+.||+|+||.||+|++..+++.||+|++++.. ......+.+|+.++..++||||+++++++.
T Consensus 68 ~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~--- 144 (437)
T 4aw2_A 68 QMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ--- 144 (437)
T ss_dssp HHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE---
T ss_pred cccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe---
Confidence 33445688999999999999999999999999999999997632 233455889999999999999999999854
Q ss_pred ccccceeeeeecccccCCchhhhhcccccc
Q 042887 119 FKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
+....|+|||||++|+|.+++.+....+
T Consensus 145 --~~~~~~lV~Ey~~gg~L~~~l~~~~~~l 172 (437)
T 4aw2_A 145 --DDNNLYLVMDYYVGGDLLTLLSKFEDRL 172 (437)
T ss_dssp --CSSEEEEEECCCTTCBHHHHHHTTTTCC
T ss_pred --eCCEEEEEEecCCCCcHHHHHHHccCCC
Confidence 4788999999999999999997644333
No 169
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.33 E-value=2.3e-12 Score=127.24 Aligned_cols=94 Identities=24% Similarity=0.364 Sum_probs=83.5
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..++|++.+.||+|+||.||+|.+..+|+.||+|.+........+.+.+|+.+++.++||||+++++++.. .+..
T Consensus 18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~ 92 (297)
T 3fxz_A 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLV-----GDEL 92 (297)
T ss_dssp GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEE-----CCEE
Confidence 34689999999999999999999999999999999987655556778999999999999999999998653 6789
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++|+|.+++...
T Consensus 93 ~lv~e~~~~~~L~~~~~~~ 111 (297)
T 3fxz_A 93 WVVMEYLAGGSLTDVVTET 111 (297)
T ss_dssp EEEEECCTTCBHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHhhc
Confidence 9999999999999998654
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=3e-12 Score=129.62 Aligned_cols=103 Identities=20% Similarity=0.183 Sum_probs=63.9
Q ss_pred eEecCCc-ccccccCCcccCCcchhcccceEEcCC-CcCccccchhhhccCCCCEeeCcCCcCcccCCccccCCCCCCeE
Q 042887 438 RLFLGFN-NLQGNVPSSLGNCQNLMTLSRLLDLSG-NLLGGSIPLEVGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYL 515 (628)
Q Consensus 438 ~L~L~~N-~l~~~~~~~~~~l~~L~~l~~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 515 (628)
.++.+++ +++ .+|. +..+++| +.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|..+++|++|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L----~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENL----TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCC----SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCe----eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 4566665 665 3555 6555555 6666664 66665555666666666666666666666666666666666666
Q ss_pred ECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 516 HLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 516 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
+|++|+|++..+..+..++ |+.|+|++|++.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666666654444454444 666666666665
No 171
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.32 E-value=1.3e-12 Score=130.78 Aligned_cols=95 Identities=24% Similarity=0.357 Sum_probs=83.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+++.+|+.+|+.++||||+++++++. ...
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 87 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIE-----TEK 87 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----ECC
Confidence 4578999999999999999999999999999999997642 344567889999999999999999999954 478
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..|+||||+++|++.+++....
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~~ 109 (328)
T 3fe3_A 88 TLYLIMEYASGGEVFDYLVAHG 109 (328)
T ss_dssp EEEEEECCCTTCBHHHHHHHHC
T ss_pred EEEEEEECCCCCcHHHHHHHcC
Confidence 8999999999999999986543
No 172
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.31 E-value=2.7e-12 Score=127.70 Aligned_cols=96 Identities=22% Similarity=0.375 Sum_probs=84.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|.+.+.||+|+||.||+|.+..+++.||+|.+........+.+.+|++++++++||||+++++++.+ ....+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~ 83 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYK-----DKRLN 83 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEec-----CCeeE
Confidence 4578999999999999999999999999999999876666667889999999999999999999999654 67899
Q ss_pred eeecccccCCchhhhhccccc
Q 042887 127 LIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~~ 147 (628)
+||||+++|+|.+++......
T Consensus 84 lv~e~~~~~~L~~~l~~~~~~ 104 (310)
T 3s95_A 84 FITEYIKGGTLRGIIKSMDSQ 104 (310)
T ss_dssp EEEECCTTCBHHHHHHHCCTT
T ss_pred EEEEecCCCcHHHHHHhccCC
Confidence 999999999999999764433
No 173
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.30 E-value=2.8e-12 Score=129.20 Aligned_cols=95 Identities=25% Similarity=0.344 Sum_probs=81.7
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
..+.|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++ +....
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~-----~~~~~ 82 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVL-----ETANK 82 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEE-----ECSSE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEE-----EeCCE
Confidence 3578999999999999999999999999999999997643 33456789999999999999999999995 44788
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.++|||||++|+|.+++....
T Consensus 83 ~~lv~E~~~gg~L~~~l~~~~ 103 (347)
T 3zgw_A 83 IFMVLEYCPGGELFDYIISQD 103 (347)
T ss_dssp EEEEEECCTTCBHHHHHHHHS
T ss_pred EEEEEeCCCCCCHHHHHHHcC
Confidence 999999999999999986543
No 174
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.29 E-value=4.2e-12 Score=128.71 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=81.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
.+.|++.+.||+|+||.||+|++..+|+.||+|+++.... ...+.+.+|+.++++++||||+++++++ +
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~ 85 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVY-----E 85 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEE-----E
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEE-----E
Confidence 4679999999999999999999999999999999976432 1346789999999999999999999995 4
Q ss_pred ccceeeeeecccccCCchhhhhcc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
+....|+||||+++|+|.+++...
T Consensus 86 ~~~~~~lv~e~~~gg~L~~~l~~~ 109 (361)
T 2yab_A 86 NRTDVVLILELVSGGELFDFLAQK 109 (361)
T ss_dssp CSSEEEEEEECCCSCBHHHHHTTC
T ss_pred eCCEEEEEEEcCCCCcHHHHHHhc
Confidence 578899999999999999998654
No 175
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.28 E-value=1.8e-12 Score=133.41 Aligned_cols=96 Identities=18% Similarity=0.301 Sum_probs=82.9
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
.....++|++.+.||+|+||.||+|++..+++.||+|++.+.. ....+.+.+|+.+++.++|||||++++++.
T Consensus 64 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~---- 139 (410)
T 3v8s_A 64 LRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ---- 139 (410)
T ss_dssp HSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE----
T ss_pred cccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE----
Confidence 3344678999999999999999999999999999999997632 334566889999999999999999999854
Q ss_pred cccceeeeeecccccCCchhhhhc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
+....|+|||||++|+|.+++..
T Consensus 140 -~~~~~~lV~E~~~gg~L~~~l~~ 162 (410)
T 3v8s_A 140 -DDRYLYMVMEYMPGGDLVNLMSN 162 (410)
T ss_dssp -CSSEEEEEECCCTTEEHHHHHHH
T ss_pred -ECCEEEEEEeCCCCCcHHHHHHc
Confidence 57889999999999999998864
No 176
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=132.94 Aligned_cols=100 Identities=23% Similarity=0.353 Sum_probs=85.3
Q ss_pred HHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887 41 ADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSI 117 (628)
Q Consensus 41 ~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 117 (628)
.+.....++|++.+.||+|+||.||+|++..+|+.||+|++++.. ....+.+.+|..++..++||||+++++++
T Consensus 54 ~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~--- 130 (412)
T 2vd5_A 54 KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF--- 130 (412)
T ss_dssp HHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE---
T ss_pred hhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE---
Confidence 333445688999999999999999999999999999999997532 33456688999999999999999999985
Q ss_pred cccccceeeeeecccccCCchhhhhccc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
++....|+|||||++|+|.+++.+.+
T Consensus 131 --~~~~~~~lVmE~~~gg~L~~~l~~~~ 156 (412)
T 2vd5_A 131 --QDENYLYLVMEYYVGGDLLTLLSKFG 156 (412)
T ss_dssp --ECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred --eeCCEEEEEEcCCCCCcHHHHHHhcC
Confidence 45788999999999999999997644
No 177
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=9.9e-12 Score=125.75 Aligned_cols=103 Identities=24% Similarity=0.228 Sum_probs=69.1
Q ss_pred eEecccC-ccccccCccccCCCCCCeEecCC-cccccccCCcccCCcchhcccceEEcCCCcCccccchhhhccCCCCEe
Q 042887 414 GLALVRN-SLRGTIPDTLGNLTLLNRLFLGF-NNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVGNLRNLAEF 491 (628)
Q Consensus 414 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~~l~~L~~L 491 (628)
.++.+++ ++++ +|. +..+++|+.|+|++ |+|++..+..|.++++| +.|+|++|+|++..|..|.++++|++|
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L----~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL----RNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC----SEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC----CEEECCCCccceeCHHHhcCCcCCCEE
Confidence 4566666 6663 555 66677777777774 77776666667666666 667777777776666667777777777
Q ss_pred eCcCCcCcccCCccccCCCCCCeEECcCceee
Q 042887 492 DLSENHFSNEIPVTLSACTTLEYLHLQGNSFS 523 (628)
Q Consensus 492 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 523 (628)
+|++|+|++..+..+..++ |+.|+|++|.+.
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777777755555555554 777777777765
No 178
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.27 E-value=8.1e-12 Score=124.80 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=86.3
Q ss_pred CcccHHHHHHHhCC----------CCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC
Q 042887 36 PMVSYADLSKATNN----------FSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR 105 (628)
Q Consensus 36 ~~~~~~~~~~~~~~----------~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~ 105 (628)
+.+++.+...+.+. |+..+.||+|+||.||+|++..+|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45667666655543 66778999999999999999889999999999876655667899999999999999
Q ss_pred CcccccceeeeccccccceeeeeecccccCCchhhhhc
Q 042887 106 NLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 106 nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
||+++++++.. ....++||||+++|++.+++..
T Consensus 103 niv~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~ 135 (321)
T 2c30_A 103 NVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQ 135 (321)
T ss_dssp TBCCEEEEEEE-----TTEEEEEECCCCSCBHHHHHTT
T ss_pred CcceEEEEEEE-----CCEEEEEEecCCCCCHHHHHHh
Confidence 99999998654 6789999999999999998764
No 179
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.27 E-value=3.7e-12 Score=124.89 Aligned_cols=92 Identities=10% Similarity=0.113 Sum_probs=80.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ..+
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~ 104 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVH-----TRA 104 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETT
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEE-----ECC
Confidence 367999999999999999999999899999999997643 233467899999999999999999999954 367
Q ss_pred eeeeeecccccCCchhhhhc
Q 042887 124 FKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~ 143 (628)
..|+||||+++++|.+++..
T Consensus 105 ~~~lv~e~~~g~~L~~~l~~ 124 (286)
T 3uqc_A 105 GGLVVAEWIRGGSLQEVADT 124 (286)
T ss_dssp EEEEEEECCCEEEHHHHHTT
T ss_pred cEEEEEEecCCCCHHHHHhc
Confidence 89999999999999999854
No 180
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.27 E-value=4.3e-12 Score=127.38 Aligned_cols=93 Identities=26% Similarity=0.341 Sum_probs=81.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++++. .....+.+.+|+.+++.++||||+++++++ ....
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~-----~~~~ 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAF-----QTHD 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEE-----ECSS
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEE-----EeCC
Confidence 46799999999999999999999999999999999764 233456788999999999999999999985 4478
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+||||+++|+|.+++...
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~~ 99 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSRE 99 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHHH
T ss_pred EEEEEEeCCCCCcHHHHHHhc
Confidence 899999999999999888654
No 181
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.26 E-value=5.7e-12 Score=128.93 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=84.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.+.|++.+.||+|+||.||+|.+..+|+.||+|++..........+.+|+.+|+.++||||+++++++. .....+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFE-----DKYEMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEE-----CSSEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEE-----eCCEEE
Confidence 467999999999999999999999999999999997765545567899999999999999999999954 478899
Q ss_pred eeecccccCCchhhhhcccccc
Q 042887 127 LIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
+||||+++|+|.+++......+
T Consensus 125 lv~E~~~gg~L~~~l~~~~~~l 146 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAEDYKM 146 (387)
T ss_dssp EEEECCCCCBHHHHTTCTTCCB
T ss_pred EEEEcCCCCcHHHHHHhhcCCC
Confidence 9999999999999987654333
No 182
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.26 E-value=6.1e-12 Score=125.65 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=81.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|.+.... .....+.+|+.+++.++||||+++++++. +....+
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~ 77 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFE-----SMEELV 77 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEE-----ETTEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEe-----cCCEEE
Confidence 468999999999999999999999999999999987543 34466889999999999999999999954 477899
Q ss_pred eeecccccCCchhhhhccc
Q 042887 127 LIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~ 145 (628)
+|||||++|+|.+++....
T Consensus 78 lv~e~~~g~~L~~~l~~~~ 96 (321)
T 1tki_A 78 MIFEFISGLDIFERINTSA 96 (321)
T ss_dssp EEECCCCCCBHHHHHTSSS
T ss_pred EEEEeCCCCCHHHHHHhcC
Confidence 9999999999999987654
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=8.3e-10 Score=112.99 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=79.1
Q ss_pred cCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchhhh
Q 042887 404 HAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLEVG 483 (628)
Q Consensus 404 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~~~ 483 (628)
..+....+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|.++.+| +.+.+..+ +.......|.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l----~~i~l~~~-i~~i~~~aF~ 283 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL----KTLNFYAK-VKTVPYLLCS 283 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC----CEEEECCC-CSEECTTTTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh----cccccccc-ceeccccccc
Confidence 34444555555555433 22234445555555655555443 443444555555555 44455432 3334445566
Q ss_pred ccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCcccccCchhhhcc
Q 042887 484 NLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENL 557 (628)
Q Consensus 484 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 557 (628)
++++|+.+++.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.+.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 6666666666666666555566666666776666544 44455556666667776666543 444444555554
No 184
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.26 E-value=3.8e-12 Score=125.62 Aligned_cols=99 Identities=29% Similarity=0.500 Sum_probs=83.6
Q ss_pred hCCCCcCceeecCCceeEEEEE----ECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGK----LGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~----~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|+ ...+++.||+|++........+.+.+|+.++++++||||+++++++.. ...
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECH---HHH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec---CCC
Confidence 4679999999999999999999 456789999999987666566789999999999999999999998653 234
Q ss_pred ceeeeeecccccCCchhhhhcccccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
...++||||+++|+|.+++......+
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~~~ 111 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKERI 111 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGGGC
T ss_pred CceEEEEEeCCCCCHHHHHHhccccc
Confidence 56899999999999999997655433
No 185
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.25 E-value=8.4e-12 Score=125.39 Aligned_cols=99 Identities=18% Similarity=0.342 Sum_probs=80.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccc------
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF------ 119 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~------ 119 (628)
.++|++.+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.++++++||||+++++++.+..-
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 357999999999999999999999999999999997543 3455779999999999999999999998754110
Q ss_pred ----------------------------------------------cccceeeeeecccccCCchhhhhccc
Q 042887 120 ----------------------------------------------KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ----------------------------------------------~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
......++|||||++|+|.+++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~ 156 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRC 156 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCC
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhccc
Confidence 11234899999999999999997654
No 186
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.25 E-value=5.6e-12 Score=127.66 Aligned_cols=93 Identities=17% Similarity=0.324 Sum_probs=80.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.+.|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++. .
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~ 97 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYS-----S 97 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----E
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEE-----e
Confidence 357999999999999999999999999999999996532 123567899999999999999999999854 4
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+|||||++|+|.+++...
T Consensus 98 ~~~~~lv~e~~~g~~L~~~l~~~ 120 (351)
T 3c0i_A 98 DGMLYMVFEFMDGADLCFEIVKR 120 (351)
T ss_dssp TTEEEEEEECCSSCBHHHHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHh
Confidence 78899999999999998887644
No 187
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.24 E-value=8.5e-12 Score=123.02 Aligned_cols=93 Identities=20% Similarity=0.352 Sum_probs=81.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+++.||+|.+.... ....+.+.+|+.++++++||||+++++++. ..+
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~-----~~~ 84 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDE-----EDD 84 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEE-----CSS
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeee-----eCC
Confidence 467999999999999999999999999999999986532 334567899999999999999999999854 478
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+||||+++|+|.+++...
T Consensus 85 ~~~lv~e~~~g~~L~~~l~~~ 105 (294)
T 4eqm_A 85 CYYLVMEYIEGPTLSEYIESH 105 (294)
T ss_dssp EEEEEEECCCSCBHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHhc
Confidence 899999999999999998654
No 188
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.24 E-value=8.7e-12 Score=124.68 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=78.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++. .....
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRR-----EGNIQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cCCeE
Confidence 468999999999999999999999999999999997543 233467889999999999999999999854 47788
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
|+|||||++|+|.+++...
T Consensus 81 ~lv~e~~~~~~L~~~l~~~ 99 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEPD 99 (323)
T ss_dssp EEEEECCTTEEGGGGSBTT
T ss_pred EEEEEcCCCCcHHHHHhhc
Confidence 9999999999999988644
No 189
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.24 E-value=7.9e-12 Score=124.46 Aligned_cols=93 Identities=23% Similarity=0.268 Sum_probs=81.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|+++... ....+.+.+|+.+++.++||||+++++++ .+..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~-----~~~~ 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTF-----QDAQ 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEE-----ECSS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEE-----EeCC
Confidence 467999999999999999999999999999999997642 23456788999999999999999999985 4478
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+||||+++|+|.+++...
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~~ 100 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRKS 100 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHHT
T ss_pred EEEEEEeCCCCCCHHHHHHHc
Confidence 899999999999999998754
No 190
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.23 E-value=4.7e-12 Score=126.65 Aligned_cols=101 Identities=40% Similarity=0.598 Sum_probs=85.6
Q ss_pred ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887 38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI 117 (628)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 117 (628)
+++.+.....++|++.+.||+|+||.||+|++ .+|+.||+|.+........+.+.+|+.+++.++||||+++++++
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~--- 104 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFC--- 104 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEEC-TTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEEC---
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEE-CCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEE---
Confidence 33444455678999999999999999999997 46899999998776555667899999999999999999999985
Q ss_pred cccccceeeeeecccccCCchhhhhcc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
......++||||+++|+|.+++...
T Consensus 105 --~~~~~~~lv~e~~~~~~L~~~l~~~ 129 (321)
T 2qkw_B 105 --DERNEMILIYKYMENGNLKRHLYGS 129 (321)
T ss_dssp --CCTTCCEEEEECCTTCBTGGGSSSS
T ss_pred --cCCCeEEEEEEcCCCCcHHHHHhcc
Confidence 4477889999999999999998654
No 191
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.23 E-value=9e-12 Score=124.87 Aligned_cols=107 Identities=37% Similarity=0.614 Sum_probs=89.9
Q ss_pred CCCCcccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCccccc
Q 042887 33 QQFPMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKII 111 (628)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~ 111 (628)
.....+++.+.....++|++.+.||+|+||.||+|.+ .+|+.||+|++.... ......+.+|+.+++.++||||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~ 93 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR 93 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceE
Confidence 4456788899999999999999999999999999986 468999999997643 23344789999999999999999999
Q ss_pred ceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
+++. .....++||||+++|+|.+++....
T Consensus 94 ~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~~ 122 (326)
T 3uim_A 94 GFCM-----TPTERLLVYPYMANGSVASCLRERP 122 (326)
T ss_dssp EEEC-----CSSCCEEEEECCTTCBHHHHHHCCS
T ss_pred EEEe-----cCCceEEEEEeccCCCHHHHHHhcc
Confidence 9964 4677899999999999999987654
No 192
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.23 E-value=9e-12 Score=126.56 Aligned_cols=93 Identities=18% Similarity=0.353 Sum_probs=81.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ....
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~-----~~~~ 102 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF 102 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCCE
Confidence 467999999999999999999999999999999997643 334567899999999999999999999854 4788
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.|+|||||++|+|.+++...
T Consensus 103 ~~lv~e~~~gg~L~~~l~~~ 122 (362)
T 2bdw_A 103 HYLVFDLVTGGELFEDIVAR 122 (362)
T ss_dssp EEEEECCCCSCBHHHHHTTC
T ss_pred EEEEEecCCCCCHHHHHHHc
Confidence 99999999999999888654
No 193
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.23 E-value=6.2e-12 Score=128.66 Aligned_cols=101 Identities=23% Similarity=0.406 Sum_probs=84.8
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
.+....++|.+.+.||+|+||.||+|.+..+++.||+|.++... ....+.|.+|+.+|++++||||+++++++.
T Consensus 108 ~~~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~----- 182 (377)
T 3cbl_A 108 KWVLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT----- 182 (377)
T ss_dssp TTBCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred ccEEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe-----
Confidence 33445578889999999999999999998899999999987542 334567899999999999999999999964
Q ss_pred ccceeeeeecccccCCchhhhhccccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~ 147 (628)
.....++||||+++|+|.+++......
T Consensus 183 ~~~~~~lv~e~~~~g~L~~~l~~~~~~ 209 (377)
T 3cbl_A 183 QKQPIYIVMELVQGGDFLTFLRTEGAR 209 (377)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHHGGG
T ss_pred cCCCcEEEEEcCCCCCHHHHHHhcCCC
Confidence 367789999999999999999765433
No 194
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.23 E-value=8.3e-12 Score=125.69 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=81.0
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccc
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDF 119 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~ 119 (628)
....++|++.+.||+|+||.||+|++..+|+.||+|+++... ....+.+.+|..++..+ +||||+++++++
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~----- 87 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTF----- 87 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEE-----
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEE-----
Confidence 345688999999999999999999999999999999997642 33456678899999887 899999999985
Q ss_pred cccceeeeeecccccCCchhhhhcc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
++....|+||||+++|+|.+++...
T Consensus 88 ~~~~~~~lv~E~~~gg~L~~~l~~~ 112 (345)
T 1xjd_A 88 QTKENLFFVMEYLNGGDLMYHIQSC 112 (345)
T ss_dssp ECSSEEEEEEECCTTCBHHHHHHHH
T ss_pred EeCCEEEEEEeCCCCCcHHHHHHHc
Confidence 4578899999999999999998653
No 195
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.23 E-value=7.3e-12 Score=127.71 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=81.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.+|+.++|||||++++++. +..
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~-----~~~ 88 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQ-----DEE 88 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 467999999999999999999999999999999997542 334567889999999999999999999854 478
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+||||+++|+|.+++...
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~~ 109 (384)
T 4fr4_A 89 DMFMVVDLLLGGDLRYHLQQN 109 (384)
T ss_dssp EEEEEECCCTTEEHHHHHHTT
T ss_pred EEEEEEecCCCCcHHHHHHhc
Confidence 899999999999999998754
No 196
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.22 E-value=9.7e-12 Score=125.66 Aligned_cols=95 Identities=27% Similarity=0.363 Sum_probs=80.7
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeecccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~ 120 (628)
...++|++.+.||+|+||.||+|++..+|+.||+|+++.. .....+.+.+|..+++.+ .||||+++++++ .
T Consensus 20 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~ 94 (353)
T 3txo_A 20 LGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCF-----Q 94 (353)
T ss_dssp ---CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEE-----E
T ss_pred CchhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEE-----E
Confidence 3457899999999999999999999999999999999764 233456788999999988 699999999985 4
Q ss_pred ccceeeeeecccccCCchhhhhcc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
+....|+|||||++|+|.+++...
T Consensus 95 ~~~~~~lv~E~~~gg~L~~~l~~~ 118 (353)
T 3txo_A 95 TPDRLFFVMEFVNGGDLMFHIQKS 118 (353)
T ss_dssp CSSEEEEEEECCCSCBHHHHHHHH
T ss_pred eCCEEEEEEeCCCCCcHHHHHHHc
Confidence 578899999999999999998654
No 197
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=124.19 Aligned_cols=96 Identities=23% Similarity=0.461 Sum_probs=80.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCc---EEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|++..+++ .||||+++.. .....+.+.+|+.++++++||||+++++++. ..
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 122 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVT-----RG 122 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----GG
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eC
Confidence 4578889999999999999999986555 4999999764 3344567999999999999999999999954 47
Q ss_pred ceeeeeecccccCCchhhhhccccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~ 147 (628)
...++||||+++|+|.+++......
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~~ 147 (325)
T 3kul_A 123 RLAMIVTEYMENGSLDTFLRTHDGQ 147 (325)
T ss_dssp GCCEEEEECCTTCBHHHHHHTTTTC
T ss_pred CccEEEeeCCCCCcHHHHHHhcccC
Confidence 7889999999999999999655433
No 198
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.22 E-value=1.1e-11 Score=125.79 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=80.9
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++..... ..+.+.+|+.+++.++||||+++++++. .....+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~~~~ 92 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVIL-----TPTHLA 92 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEe-----eCCEEE
Confidence 4689999999999999999999999999999999975432 3466889999999999999999999954 477899
Q ss_pred eeecccccCCchhhhhcc
Q 042887 127 LIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~ 144 (628)
+|||||++|+|.+++...
T Consensus 93 lv~e~~~~~~L~~~l~~~ 110 (361)
T 3uc3_A 93 IIMEYASGGELYERICNA 110 (361)
T ss_dssp EEEECCCSCBHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhc
Confidence 999999999999988653
No 199
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.22 E-value=1.5e-11 Score=122.76 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=81.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.+.|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|++++++++||||+++++++.. ......
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~~ 84 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHK 84 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeec---CCCceE
Confidence 357999999999999999999999999999999997543 3345678899999999999999999998653 234578
Q ss_pred eeeecccccCCchhhhhccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~ 145 (628)
++||||+++|+|.+++....
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~ 104 (319)
T 4euu_A 85 VLIMEFCPCGSLYTVLEEPS 104 (319)
T ss_dssp EEEEECCTTCBHHHHHHSGG
T ss_pred EEEEeCCCCCCHHHHHHHhc
Confidence 99999999999999997654
No 200
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=122.82 Aligned_cols=93 Identities=22% Similarity=0.338 Sum_probs=80.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
.+.|++.+.||+|+||.||+|.+..+|+.||+|++..... ...+.+.+|+.++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----- 84 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYE----- 84 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEE-----
Confidence 3568999999999999999999999999999999976432 13467899999999999999999999854
Q ss_pred ccceeeeeecccccCCchhhhhcc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.....++||||+++|+|.+++...
T Consensus 85 ~~~~~~lv~e~~~~~~L~~~l~~~ 108 (326)
T 2y0a_A 85 NKTDVILILELVAGGELFDFLAEK 108 (326)
T ss_dssp CSSEEEEEEECCCSCBHHHHHTTS
T ss_pred eCCEEEEEEEcCCCCCHHHHHHhc
Confidence 477899999999999999998653
No 201
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.22 E-value=9.4e-12 Score=125.81 Aligned_cols=95 Identities=22% Similarity=0.345 Sum_probs=82.5
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-----ccchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-----QKGAAKSFVTECEALSNVRHRNLIKIITVCSSID 118 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-----~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~ 118 (628)
....++|++.+.||+|+||.||+|++..+++.||+|++... .....+.+.+|+.++++++||||+++++++.
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~--- 98 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYE--- 98 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEE---
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhc---
Confidence 44567899999999999999999999999999999999753 2345578999999999999999999999954
Q ss_pred ccccceeeeeecccccCCchhhhhc
Q 042887 119 FKGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
.....++|||||++|+|.+++..
T Consensus 99 --~~~~~~lv~e~~~gg~L~~~l~~ 121 (345)
T 3hko_A 99 --DEQYICLVMELCHGGHLLDKLNV 121 (345)
T ss_dssp --CSSEEEEEEECCCSCBHHHHEEE
T ss_pred --cCCeEEEEEeCCCCCcHHHHHHH
Confidence 47889999999999999999864
No 202
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.22 E-value=9.8e-12 Score=122.25 Aligned_cols=95 Identities=26% Similarity=0.508 Sum_probs=82.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCC-------cEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETG-------TTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~-------~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
.++|++.+.||+|+||.||+|++..++ +.||+|.+........+.+.+|+.++++++||||+++++++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---- 82 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCV---- 82 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEEC----
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEE----
Confidence 467999999999999999999998776 469999997766666788999999999999999999999954
Q ss_pred cccceeeeeecccccCCchhhhhcccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
.....++||||+++|+|.+++.....
T Consensus 83 -~~~~~~lv~e~~~~~~L~~~l~~~~~ 108 (289)
T 4fvq_A 83 -CGDENILVQEFVKFGSLDTYLKKNKN 108 (289)
T ss_dssp -CTTCCEEEEECCTTCBHHHHHHHTGG
T ss_pred -eCCCCEEEEECCCCCCHHHHHHhCCC
Confidence 46778999999999999999976553
No 203
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.21 E-value=1.2e-11 Score=125.00 Aligned_cols=93 Identities=23% Similarity=0.297 Sum_probs=81.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++ .+..
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~ 114 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSF-----KDNS 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE-----ECSS
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEE-----EcCC
Confidence 367999999999999999999999999999999997542 23456788999999999999999999985 4478
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+||||+++|+|.+++.+.
T Consensus 115 ~~~lv~e~~~gg~L~~~l~~~ 135 (350)
T 1rdq_E 115 NLYMVMEYVAGGEMFSHLRRI 135 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHH
T ss_pred EEEEEEcCCCCCcHHHHHHHc
Confidence 899999999999999998754
No 204
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.21 E-value=1.5e-11 Score=124.02 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=80.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++.++ +||||+++++++ .+.
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~~ 82 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QTE 82 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEE-----ECS
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEE-----EeC
Confidence 357999999999999999999999999999999997642 23456688999999988 799999999985 447
Q ss_pred ceeeeeecccccCCchhhhhcc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
...|+||||+++|+|.+++...
T Consensus 83 ~~~~lv~e~~~gg~L~~~l~~~ 104 (345)
T 3a8x_A 83 SRLFFVIEYVNGGDLMFHMQRQ 104 (345)
T ss_dssp SEEEEEECCCCSCBHHHHHHHH
T ss_pred CEEEEEEeCCCCCcHHHHHHHc
Confidence 8899999999999999988654
No 205
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=129.09 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=80.6
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++ ....
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~-----~~~~ 83 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSI-----SEEG 83 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEE-----ECSS
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEE-----EECC
Confidence 3467999999999999999999999999999999997643 23456789999999999999999999985 4578
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..|+|||||++|+|.+++....
T Consensus 84 ~~~lv~E~~~gg~L~~~i~~~~ 105 (444)
T 3soa_A 84 HHYLIFDLVTGGELFEDIVARE 105 (444)
T ss_dssp EEEEEECCCBCCBHHHHHHHCS
T ss_pred EEEEEEEeCCCCCHHHHHHHcC
Confidence 8999999999999999887543
No 206
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.20 E-value=1.4e-11 Score=120.40 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=82.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|.+........+.+.+|++++++++||||+++++++. .....+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 82 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFE-----DNTDIY 82 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCeEE
Confidence 457999999999999999999999999999999998765556678999999999999999999999854 477899
Q ss_pred eeecccccCCchhhhhcc
Q 042887 127 LIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~ 144 (628)
+||||++++++.+++...
T Consensus 83 lv~e~~~~~~L~~~~~~~ 100 (277)
T 3f3z_A 83 LVMELCTGGELFERVVHK 100 (277)
T ss_dssp EEEECCCSCBHHHHHHHH
T ss_pred EEEeccCCCcHHHHHHHc
Confidence 999999999999888654
No 207
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.20 E-value=1.4e-11 Score=126.12 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=80.1
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~ 121 (628)
..++|++.+.||+|+||.||+|++..+++.||+|++++.. ....+.+.+|..++.++ +|||||++++++ .+
T Consensus 50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~-----~~ 124 (396)
T 4dc2_A 50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCF-----QT 124 (396)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEE-----EC
T ss_pred ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEE-----EE
Confidence 3568999999999999999999999999999999997642 33456688999999887 799999999985 45
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+|||||++|+|.+++.+.
T Consensus 125 ~~~~~lV~E~~~gg~L~~~l~~~ 147 (396)
T 4dc2_A 125 ESRLFFVIEYVNGGDLMFHMQRQ 147 (396)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHH
T ss_pred CCEEEEEEEcCCCCcHHHHHHHc
Confidence 78899999999999999988754
No 208
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.20 E-value=9.4e-12 Score=123.58 Aligned_cols=96 Identities=24% Similarity=0.420 Sum_probs=81.5
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
+....++|++.+.||+|+||.||+|++ +|+.||+|++.... ....+.+.+|+.++++++||||+++++++.
T Consensus 32 ~~i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~----- 104 (309)
T 3p86_A 32 MDIPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT----- 104 (309)
T ss_dssp CBCCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred ccCChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-----
Confidence 334567899999999999999999988 68899999987543 334567899999999999999999999854
Q ss_pred ccceeeeeecccccCCchhhhhccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....++||||+++|+|.+++....
T Consensus 105 ~~~~~~lv~e~~~~~~L~~~l~~~~ 129 (309)
T 3p86_A 105 QPPNLSIVTEYLSRGSLYRLLHKSG 129 (309)
T ss_dssp STTCCEEEEECCTTCBHHHHHHSTT
T ss_pred ECCceEEEEecCCCCcHHHHHhhcC
Confidence 4677899999999999999997654
No 209
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=125.45 Aligned_cols=89 Identities=22% Similarity=0.357 Sum_probs=73.4
Q ss_pred CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeeccc
Q 042887 53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEYM 132 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~ 132 (628)
.+.||+|+||.||+|++..+|+.||+|+++.......+.+.+|+.++++++||||+++++++. .....++||||+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~-----~~~~~~lv~E~~ 168 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFE-----SKNDIVLVMEYV 168 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSEEEEEEECC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEE-----ECCEEEEEEeCC
Confidence 567999999999999999999999999998765556678999999999999999999999954 467899999999
Q ss_pred ccCCchhhhhcccc
Q 042887 133 KCGSSEDWMHQSND 146 (628)
Q Consensus 133 ~~g~L~~~l~~~~~ 146 (628)
++|+|.+++.....
T Consensus 169 ~~~~L~~~l~~~~~ 182 (373)
T 2x4f_A 169 DGGELFDRIIDESY 182 (373)
T ss_dssp TTCEEHHHHHHTGG
T ss_pred CCCcHHHHHHhcCC
Confidence 99999998875543
No 210
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.19 E-value=9.7e-12 Score=126.48 Aligned_cols=103 Identities=19% Similarity=0.372 Sum_probs=85.7
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEE-----ECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccc
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGK-----LGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIIT 112 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~-----~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~ 112 (628)
...+....++|++.+.||+|+||.||+|+ ...+++.||||+++... ....+.+.+|+++++++ +||||+++++
T Consensus 14 ~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~ 93 (359)
T 3vhe_A 14 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 93 (359)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred cccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeee
Confidence 55666778899999999999999999999 44567899999997643 33456799999999999 7999999999
Q ss_pred eeeeccccccceeeeeecccccCCchhhhhcccc
Q 042887 113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
++.+ .....++|||||++|+|.+++.....
T Consensus 94 ~~~~----~~~~~~iv~e~~~~g~L~~~l~~~~~ 123 (359)
T 3vhe_A 94 ACTK----PGGPLMVIVEFCKFGNLSTYLRSKRN 123 (359)
T ss_dssp EECS----TTSCCEEEEECCTTEEHHHHHHTTTT
T ss_pred eeec----CCCceEEEEEecCCCcHHHHHHhccc
Confidence 8643 34558999999999999999987653
No 211
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.19 E-value=1.4e-11 Score=125.68 Aligned_cols=95 Identities=24% Similarity=0.487 Sum_probs=79.9
Q ss_pred hCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|++. .++..||+|.++... ....+.|.+|+.++++++||||+++++++. ..
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~ 118 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVT-----KS 118 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-----SS
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----eC
Confidence 357999999999999999999986 457789999997643 344567999999999999999999999964 46
Q ss_pred ceeeeeecccccCCchhhhhcccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
...++||||+++|+|.+++.....
T Consensus 119 ~~~~lv~e~~~~~sL~~~l~~~~~ 142 (373)
T 2qol_A 119 KPVMIVTEYMENGSLDSFLRKHDA 142 (373)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTT
T ss_pred CceEEEEeCCCCCcHHHHHHhCCC
Confidence 788999999999999999976543
No 212
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.19 E-value=1.8e-11 Score=121.22 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=80.6
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..+.|++.+.||+|+||.||+|.+..+++.||+|++........+.+.+|+.+++.++||||+++++++.. ....
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 91 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYH-----DGKL 91 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----C-CE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeee-----CCeE
Confidence 45689999999999999999999999999999999977655566789999999999999999999998653 6788
Q ss_pred eeeecccccCCchhhhhccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~ 145 (628)
++||||++++++.+++....
T Consensus 92 ~lv~e~~~~~~l~~~~~~~~ 111 (302)
T 2j7t_A 92 WIMIEFCPGGAVDAIMLELD 111 (302)
T ss_dssp EEEEECCTTEEHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHhhc
Confidence 99999999999999886543
No 213
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=8e-09 Score=105.63 Aligned_cols=311 Identities=11% Similarity=0.046 Sum_probs=164.7
Q ss_pred CcccEEEccCCccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEe
Q 042887 162 LKLEMIDVGDNQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISL 241 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L 241 (628)
.+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.+. +|+.+.+..+ ++.+...+|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 4566666653 455555667777777777777543 555556666665 4666655433 44344444544 35666666
Q ss_pred ecccCcccCChhhhhCCCCCcEEecccCcccccccccccCCCCCCEEEcccccceeecccccccCCCCCEEEccCCcCCC
Q 042887 242 HSNRFEGSLPLNIGFNIPNVNFLSVGQNNFTGSLPHSFSNASNLQVLDVYKNHFSGQVKIDFNRLSNLSRLFLSKNNLGT 321 (628)
Q Consensus 242 ~~n~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 321 (628)
..+ ++ .+....|.. .+++.+.+..+ ++.+....|.++.+++.+.+..+.........+. .....
T Consensus 121 p~~-~~-~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~----------- 184 (379)
T 4h09_A 121 PGA-TT-EIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKNK----------- 184 (379)
T ss_dssp CTT-CC-EECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETTS-----------
T ss_pred CCc-cc-ccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccccc-----------
Confidence 544 22 333333332 23444333322 2223333444444444444433322111110000 00000
Q ss_pred cCCCCccccccccCCCCCceeecccCCcccccchHHHhccccccEEEccCCcceeeCchhhhccCCcCeeeecccccccc
Q 042887 322 ESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIANLSAKITVIGMGDNQISGTIPSEIKNLVNINAFGVEYNQLTGT 401 (628)
Q Consensus 322 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 401 (628)
.....+..+..+..+. +... ........+....+++.+.+..+ +...
T Consensus 185 ------~~~~~~~~~~~~~~~~-------------------------~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i 231 (379)
T 4h09_A 185 ------TILESYPAAKTGTEFT-------------------------IPST-VKTVTAYGFSYGKNLKKITITSG-VTTL 231 (379)
T ss_dssp ------SEEEECCTTCCCSEEE-------------------------CCTT-CCEECTTTTTTCSSCSEEECCTT-CCEE
T ss_pred ------ceeccccccccccccc-------------------------cccc-eeEEeecccccccccceeeeccc-eeEE
Confidence 0000011111122111 1111 11123344555666666665443 3334
Q ss_pred CCcCCCCCCCCCeEecccCccccccCccccCCCCCCeEecCCcccccccCCcccCCcchhcccceEEcCCCcCccccchh
Q 042887 402 IPHAIGELKNLQGLALVRNSLRGTIPDTLGNLTLLNRLFLGFNNLQGNVPSSLGNCQNLMTLSRLLDLSGNLLGGSIPLE 481 (628)
Q Consensus 402 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~l~~~L~Ls~N~l~~~~~~~ 481 (628)
...+|..+..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.+|.+| +.+.+.++.++.+....
T Consensus 232 ~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L----~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 232 GDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL----TKVVMDNSAIETLEPRV 305 (379)
T ss_dssp CTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC----CEEEECCTTCCEECTTT
T ss_pred ccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc----ccccccccccceehhhh
Confidence 5566777777777777655 55455666777777777777543 554556677777777 66777777777666677
Q ss_pred hhccCCCCEeeCcCCcCcccCCccccCCCCCCeEECcCceeeeecCccccCCC
Q 042887 482 VGNLRNLAEFDLSENHFSNEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK 534 (628)
Q Consensus 482 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 534 (628)
|.++.+|+.+++..+ ++.+....|.++++|+.+.+..+ ++.+...+|.+.+
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 888888888888654 55555667888888888887655 5545566666553
No 214
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.19 E-value=2.3e-11 Score=120.15 Aligned_cols=93 Identities=24% Similarity=0.379 Sum_probs=75.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------------------------chhhhHHHHHHHHh
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------------------------GAAKSFVTECEALS 100 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------------------------~~~~~~~~E~~~l~ 100 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999965321 12356899999999
Q ss_pred hcCCCCcccccceeeeccccccceeeeeecccccCCchhhhh
Q 042887 101 NVRHRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 101 ~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~ 142 (628)
+++||||+++++++.+ ......|+||||+++|++.++..
T Consensus 92 ~l~h~~iv~~~~~~~~---~~~~~~~lv~e~~~~~~l~~~~~ 130 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDD---PNEDHLYMVFELVNQGPVMEVPT 130 (298)
T ss_dssp TCCCTTBCCEEEEEEC---SSSSEEEEEEECCTTCBSCCSSC
T ss_pred hCCCCCCCeEEEEEEc---CCCCEEEEEEecCCCCcHHHHhh
Confidence 9999999999998653 23568899999999999987643
No 215
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.19 E-value=2.6e-11 Score=120.88 Aligned_cols=93 Identities=23% Similarity=0.304 Sum_probs=80.6
Q ss_pred hCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887 47 TNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.+.|++. +.||+|+||.||+|++..+++.||+|++........+.+.+|+.++.++ +||||+++++++. ..+.
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~-----~~~~ 85 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFE-----EEDR 85 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----ETTE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEe-----eCCE
Confidence 3568874 7899999999999999999999999999776555567899999999985 7999999999954 4778
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.|+||||+++|+|.+++...
T Consensus 86 ~~lv~e~~~~~~L~~~l~~~ 105 (316)
T 2ac3_A 86 FYLVFEKMRGGSILSHIHKR 105 (316)
T ss_dssp EEEEEECCTTCBHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHhcc
Confidence 99999999999999998654
No 216
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=125.46 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=81.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.+.|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|++++++++||||+++++++.. ......
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---~~~~~~ 84 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEE---TTTRHK 84 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC---TTTCCE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeecc---CCCCee
Confidence 357999999999999999999999999999999997543 3345678899999999999999999998653 234477
Q ss_pred eeeecccccCCchhhhhccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~ 145 (628)
++|||||++|+|.+++....
T Consensus 85 ~lv~e~~~~g~L~~~l~~~~ 104 (396)
T 4eut_A 85 VLIMEFCPCGSLYTVLEEPS 104 (396)
T ss_dssp EEEECCCTTEEHHHHTTSGG
T ss_pred EEEEecCCCCCHHHHHHhhh
Confidence 99999999999999987654
No 217
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.18 E-value=3.5e-11 Score=124.83 Aligned_cols=94 Identities=22% Similarity=0.280 Sum_probs=78.7
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcCCCCcccccceeee
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVRHRNLIKIITVCSS 116 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~ 116 (628)
...++|.+.+.||+|+||.||+|.+..+++.||+|++.... ......+.+|+.+|++++||||+++++++.
T Consensus 132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~- 210 (419)
T 3i6u_A 132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD- 210 (419)
T ss_dssp HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-
T ss_pred hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-
Confidence 45688999999999999999999999999999999997532 122346889999999999999999999853
Q ss_pred ccccccceeeeeecccccCCchhhhhcc
Q 042887 117 IDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+||||+++|+|.+++...
T Consensus 211 -----~~~~~lv~e~~~~g~L~~~l~~~ 233 (419)
T 3i6u_A 211 -----AEDYYIVLELMEGGELFDKVVGN 233 (419)
T ss_dssp -----SSEEEEEEECCTTCBGGGGTSSS
T ss_pred -----cCceEEEEEcCCCCcHHHHHhcc
Confidence 34579999999999999888654
No 218
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.18 E-value=1.7e-11 Score=128.64 Aligned_cols=93 Identities=28% Similarity=0.412 Sum_probs=81.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|.+.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++. ...
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~-----~~~ 89 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVIS-----TPS 89 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----ECC
Confidence 468999999999999999999999999999999997542 234567899999999999999999999954 477
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+|||||++|+|.+++.+.
T Consensus 90 ~~~lv~E~~~gg~L~~~l~~~ 110 (476)
T 2y94_A 90 DIFMVMEYVSGGELFDYICKN 110 (476)
T ss_dssp EEEEEEECCSSEEHHHHTTSS
T ss_pred EEEEEEeCCCCCcHHHHHHhc
Confidence 899999999999999998654
No 219
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.18 E-value=2.6e-11 Score=124.68 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=81.9
Q ss_pred hCCCCcCceeecC--CceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQG--SFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G--~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+| +||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++|||||++++++. ..
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~ 98 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFI-----AD 98 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ET
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEE-----EC
Confidence 4579999999999 99999999999999999999997643 344567889999999999999999999965 47
Q ss_pred ceeeeeecccccCCchhhhhcc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
...|+|||||++|++.+++...
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~ 120 (389)
T 3gni_B 99 NELWVVTSFMAYGSAKDLICTH 120 (389)
T ss_dssp TEEEEEEECCTTCBHHHHHHHT
T ss_pred CEEEEEEEccCCCCHHHHHhhh
Confidence 7899999999999999998754
No 220
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.18 E-value=2.3e-11 Score=119.31 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=81.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|.+.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|++++++++||||+++++++. .....
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-----~~~~~ 95 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFE-----DYHNM 95 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHhee-----cCCeE
Confidence 457999999999999999999999999999999997653 334577899999999999999999999954 47789
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++|++.+++...
T Consensus 96 ~lv~e~~~~~~L~~~l~~~ 114 (285)
T 3is5_A 96 YIVMETCEGGELLERIVSA 114 (285)
T ss_dssp EEEECCCSCCBHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHhh
Confidence 9999999999999988643
No 221
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.18 E-value=2.2e-11 Score=120.71 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=79.1
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..++|.+.+.||+|+||.||+|++..+|+.||+|++........+.+.+|+.++++++||||+++++++. .....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~ 81 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYE-----STTHY 81 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcc-----cCCEE
Confidence 3467999999999999999999999999999999998655445567899999999999999999999854 47789
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++|+|.+++...
T Consensus 82 ~lv~e~~~~~~L~~~l~~~ 100 (304)
T 2jam_A 82 YLVMQLVSGGELFDRILER 100 (304)
T ss_dssp EEEECCCCSCBHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHc
Confidence 9999999999999988653
No 222
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.17 E-value=1.9e-11 Score=122.58 Aligned_cols=92 Identities=23% Similarity=0.299 Sum_probs=79.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|.+.+.||+|+||.||+|.+..+|+.||+|++.... ......+.+|+.+++.++||||+++++++. ...
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~-----~~~ 82 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVIT-----TPT 82 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence 468999999999999999999999999999999997542 233467899999999999999999999954 477
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..++||||+ +|++.+++...
T Consensus 83 ~~~lv~E~~-~g~l~~~l~~~ 102 (336)
T 3h4j_B 83 DIVMVIEYA-GGELFDYIVEK 102 (336)
T ss_dssp EEEEEECCC-CEEHHHHHHHH
T ss_pred EEEEEEECC-CCcHHHHHHHc
Confidence 899999999 67888887654
No 223
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.17 E-value=2.9e-11 Score=120.83 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=80.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
.+.|++.+.||+|+||.||+|++..+|+.||+|++..... ...+.+.+|+.++++++||||+++++++.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 85 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYE----- 85 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEe-----
Confidence 4569999999999999999999999999999999976432 13467899999999999999999999854
Q ss_pred ccceeeeeecccccCCchhhhhcc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.....++||||+++++|.+++...
T Consensus 86 ~~~~~~lv~e~~~~~~L~~~l~~~ 109 (321)
T 2a2a_A 86 NRTDVVLILELVSGGELFDFLAQK 109 (321)
T ss_dssp CSSEEEEEECCCCSCBHHHHHHTC
T ss_pred cCCEEEEEEEcCCCCcHHHHHHhc
Confidence 477899999999999999998653
No 224
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.17 E-value=2.4e-11 Score=122.81 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=74.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..+.|++.+.||+|+||.||+|++..+++.||+|++.... ..+.+.+|+.++++++||||+++++++. .....
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~-----~~~~~ 123 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFE-----TPTEI 123 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEE-----CSSEE
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEe-----cCCeE
Confidence 3467999999999999999999999999999999997543 3456889999999999999999999954 47789
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++|+|.+++...
T Consensus 124 ~lv~e~~~~~~L~~~l~~~ 142 (349)
T 2w4o_A 124 SLVLELVTGGELFDRIVEK 142 (349)
T ss_dssp EEEECCCCSCBHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHhc
Confidence 9999999999999988654
No 225
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.16 E-value=3.7e-11 Score=116.72 Aligned_cols=93 Identities=24% Similarity=0.463 Sum_probs=79.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|.+. +++.||+|++..... ..+.+.+|++++++++||||+++++++. .....+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 81 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC 81 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSEE
T ss_pred hhhceeeheecCCCccEEEEEEec-CCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEe-----cCCceE
Confidence 467999999999999999999996 577899999976433 3467899999999999999999999854 467889
Q ss_pred eeecccccCCchhhhhcccc
Q 042887 127 LIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~ 146 (628)
+||||+++|++.+++.....
T Consensus 82 lv~e~~~~~~L~~~l~~~~~ 101 (269)
T 4hcu_A 82 LVFEFMEHGCLSDYLRTQRG 101 (269)
T ss_dssp EEEECCTTCBHHHHHHTTTT
T ss_pred EEEEeCCCCcHHHHHHhcCc
Confidence 99999999999999976543
No 226
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.16 E-value=2.2e-11 Score=129.74 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=79.4
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-------------chhhhHHHHHHHHhhcCCCCccccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------------GAAKSFVTECEALSNVRHRNLIKII 111 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~nIv~l~ 111 (628)
...+.|++.+.||+|+||.||+|++..+++.||+|++..... ...+.+.+|+.++++++||||++++
T Consensus 33 ~i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~ 112 (504)
T 3q5i_A 33 KIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF 112 (504)
T ss_dssp CGGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred CcccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence 346789999999999999999999999999999999975421 2346789999999999999999999
Q ss_pred ceeeeccccccceeeeeecccccCCchhhhhcc
Q 042887 112 TVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 112 ~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
+++. .....|+|||||++|+|.+++...
T Consensus 113 ~~~~-----~~~~~~lv~e~~~gg~L~~~l~~~ 140 (504)
T 3q5i_A 113 DVFE-----DKKYFYLVTEFYEGGELFEQIINR 140 (504)
T ss_dssp EEEE-----CSSEEEEEEECCTTCBHHHHHHHH
T ss_pred EEEE-----cCCEEEEEEecCCCCcHHHHHHHc
Confidence 9954 478899999999999999888654
No 227
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.16 E-value=2.8e-11 Score=128.89 Aligned_cols=94 Identities=21% Similarity=0.309 Sum_probs=81.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ......+.+|+.+|+.++|||||++++++ ++..
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~~~ 257 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAY-----ETKD 257 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSS
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEE-----eeCC
Confidence 467999999999999999999999999999999997642 23456688999999999999999999985 4578
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..|+||||++||+|.+++....
T Consensus 258 ~l~lVmEy~~gg~L~~~l~~~~ 279 (576)
T 2acx_A 258 ALCLVLTLMNGGDLKFHIYHMG 279 (576)
T ss_dssp EEEEEECCCCSCBHHHHHHSSS
T ss_pred EEEEEEEcCCCCcHHHHHHhcC
Confidence 8999999999999999887543
No 228
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.16 E-value=3.5e-11 Score=120.01 Aligned_cols=92 Identities=24% Similarity=0.511 Sum_probs=66.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++ ......
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~~~ 78 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVI-----HTENKL 78 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEE-----CCTTEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEE-----EECCeE
Confidence 467999999999999999999999999999999997643 33456788999999999999999999995 447789
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||++ |++.+++...
T Consensus 79 ~lv~e~~~-~~L~~~l~~~ 96 (317)
T 2pmi_A 79 TLVFEFMD-NDLKKYMDSR 96 (317)
T ss_dssp EEEEECCC-CBHHHHHHHH
T ss_pred EEEEEecC-CCHHHHHHhc
Confidence 99999999 5898888654
No 229
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.16 E-value=3.9e-11 Score=117.25 Aligned_cols=95 Identities=17% Similarity=0.311 Sum_probs=82.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|.+..+|+.||+|.+.... ....+.+.+|+.++++++||||+++++++.. +....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---~~~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID---RTNTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---GGGTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEec---CCCce
Confidence 468999999999999999999999999999999997543 3345678999999999999999999998653 34678
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.++||||+++|+|.+++...
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~ 101 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKG 101 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHhh
Confidence 89999999999999998754
No 230
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.16 E-value=2.3e-11 Score=123.95 Aligned_cols=94 Identities=22% Similarity=0.432 Sum_probs=79.4
Q ss_pred hCCCCcCceeecCCceeEEEEEEC-------CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceeeec
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLG-------ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCSSI 117 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~-------~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~ 117 (628)
.++|++.+.||+|+||.||+|++. .++..||+|+++... ....+.+.+|+.+|+.+ +||||+++++++.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~-- 157 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT-- 157 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEEC--
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEc--
Confidence 467889999999999999999974 345679999997643 34456799999999999 8999999999954
Q ss_pred cccccceeeeeecccccCCchhhhhccc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....|+||||+++|+|.+++....
T Consensus 158 ---~~~~~~lv~e~~~~g~L~~~l~~~~ 182 (370)
T 2psq_A 158 ---QDGPLYVIVEYASKGNLREYLRARR 182 (370)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred ---cCCCEEEEEEcCCCCCHHHHHHhhC
Confidence 4778999999999999999997654
No 231
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.16 E-value=2.1e-11 Score=123.09 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=81.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~ 121 (628)
..++|++.+.||+|+||.||+|++..+|+.||+|+++... ....+.+.+|..++..+ .||+|+++++++ ++
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~-----~~ 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCF-----QT 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEE-----EC
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEE-----Ec
Confidence 4578999999999999999999999899999999997642 33456788999999988 799999999984 45
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+||||+++|+|.+++...
T Consensus 93 ~~~~~lv~E~~~gg~L~~~l~~~ 115 (353)
T 2i0e_A 93 MDRLYFVMEYVNGGDLMYHIQQV 115 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHhc
Confidence 78899999999999999998754
No 232
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.15 E-value=4.4e-11 Score=117.21 Aligned_cols=93 Identities=18% Similarity=0.353 Sum_probs=80.9
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~ 79 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF 79 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSSE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEE-----cCCE
Confidence 468999999999999999999999999999999997543 334567889999999999999999999854 4778
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.++||||+++|++.+++...
T Consensus 80 ~~~v~e~~~~~~l~~~~~~~ 99 (284)
T 3kk8_A 80 HYLVFDLVTGGELFEDIVAR 99 (284)
T ss_dssp EEEEECCCCSCBHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHhc
Confidence 89999999999998887654
No 233
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.15 E-value=3.4e-11 Score=120.68 Aligned_cols=97 Identities=23% Similarity=0.372 Sum_probs=83.1
Q ss_pred hCCCCcCceeecCCceeEEEEEE----CCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~----~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|++ ..+++.||+|++........+.+.+|++++++++||||+++++++.. +..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 98 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGR 98 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSS
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCC
Confidence 35799999999999999999994 56789999999987666566789999999999999999999998653 346
Q ss_pred ceeeeeecccccCCchhhhhcccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
...++||||+++|+|.+++.....
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~ 122 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHRA 122 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHGG
T ss_pred ceEEEEEeecCCCCHHHHHHhccc
Confidence 778999999999999999976443
No 234
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.15 E-value=1.1e-11 Score=121.85 Aligned_cols=97 Identities=24% Similarity=0.469 Sum_probs=83.8
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
++....++|++.+.||+|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.++||||+++++++. .
T Consensus 7 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~ 80 (288)
T 3kfa_A 7 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCT-----R 80 (288)
T ss_dssp TTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEEC-----S
T ss_pred cccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEc-----c
Confidence 44445678999999999999999999999889999999987543 34577899999999999999999999854 4
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....++||||+++|+|.+++...
T Consensus 81 ~~~~~~v~e~~~~~~L~~~~~~~ 103 (288)
T 3kfa_A 81 EPPFYIITEFMTYGNLLDYLREC 103 (288)
T ss_dssp SSSEEEEEECCTTEEHHHHHHHC
T ss_pred CCCEEEEEEcCCCCcHHHHHHhc
Confidence 77889999999999999999754
No 235
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=124.42 Aligned_cols=95 Identities=23% Similarity=0.404 Sum_probs=79.1
Q ss_pred HhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
..++|++.+.||+|+||.||+|++ ..+++.||||+++.. .......+.+|+.++++++||||+++++++.
T Consensus 69 ~~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~---- 144 (367)
T 3l9p_A 69 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL---- 144 (367)
T ss_dssp CGGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred CHhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEe----
Confidence 346789999999999999999994 346778999999654 3344567899999999999999999999954
Q ss_pred cccceeeeeecccccCCchhhhhccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....++|||||++|+|.+++....
T Consensus 145 -~~~~~~lv~e~~~~g~L~~~l~~~~ 169 (367)
T 3l9p_A 145 -QSLPRFILLELMAGGDLKSFLRETR 169 (367)
T ss_dssp -SSSSCEEEEECCTTEEHHHHHHHHS
T ss_pred -cCCCCEEEEEeCCCCCHHHHHHhhc
Confidence 4677899999999999999997654
No 236
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.15 E-value=8.1e-11 Score=116.02 Aligned_cols=92 Identities=17% Similarity=0.334 Sum_probs=78.1
Q ss_pred CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeee
Q 042887 49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALI 128 (628)
Q Consensus 49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv 128 (628)
+|.....||+|+||.||+|.+..+++.||+|.+........+.+.+|+.+++.++||||+++++++.. ....++|
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv 97 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSE-----NGFIKIF 97 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEe-----CCcEEEE
Confidence 44555689999999999999999999999999987655556789999999999999999999998653 6789999
Q ss_pred ecccccCCchhhhhccc
Q 042887 129 YEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 129 ~e~~~~g~L~~~l~~~~ 145 (628)
|||+++++|.+++....
T Consensus 98 ~e~~~~~~L~~~l~~~~ 114 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKW 114 (295)
T ss_dssp EECCSEEEHHHHHHHTT
T ss_pred EEeCCCCCHHHHHHhhc
Confidence 99999999999987643
No 237
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.15 E-value=2.4e-11 Score=121.72 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=74.1
Q ss_pred hCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
.++|++.+.||+|+||.||+|++. .+|+.||+|+++... ......+.+|+.+++.++||||+++++++.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~---- 91 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQ---- 91 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEE----
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEE----
Confidence 467999999999999999999985 678999999997542 234456789999999999999999999854
Q ss_pred cccceeeeeecccccCCchhhhhcc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.....|+||||+++|+|.+++...
T Consensus 92 -~~~~~~lv~e~~~~~~L~~~l~~~ 115 (327)
T 3a62_A 92 -TGGKLYLILEYLSGGELFMQLERE 115 (327)
T ss_dssp -CSSCEEEEEECCTTEEHHHHHHHH
T ss_pred -cCCEEEEEEeCCCCCcHHHHHHhC
Confidence 477899999999999999988654
No 238
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.15 E-value=3e-11 Score=128.05 Aligned_cols=94 Identities=26% Similarity=0.319 Sum_probs=81.8
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++.+.||+|+||.||+|++..+++.||+|++.... ......+.+|+.++++++||||+++++++. ...
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 94 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----DSS 94 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEE-----cCC
Confidence 3467999999999999999999999999999999996532 334577899999999999999999999954 478
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+|||||++|+|.+++...
T Consensus 95 ~~~lv~e~~~~~~L~~~~~~~ 115 (486)
T 3mwu_A 95 SFYIVGELYTGGELFDEIIKR 115 (486)
T ss_dssp EEEEEECCCCSCBHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHhc
Confidence 899999999999999888654
No 239
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.15 E-value=2.2e-11 Score=119.41 Aligned_cols=99 Identities=22% Similarity=0.417 Sum_probs=79.5
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.+....++|++.+.||+|+||.||+|.+. +++.||+|++..... ..+.+.+|++++++++||||+++++++. .
T Consensus 18 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~ 90 (283)
T 3gen_A 18 SWEIDPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCT-----K 90 (283)
T ss_dssp TTBCCGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----S
T ss_pred CccCCHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEe-----c
Confidence 34445678999999999999999999985 677899999976543 3467899999999999999999999854 4
Q ss_pred cceeeeeecccccCCchhhhhccccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~ 147 (628)
....++||||+++|+|.+++......
T Consensus 91 ~~~~~lv~e~~~~~~L~~~l~~~~~~ 116 (283)
T 3gen_A 91 QRPIFIITEYMANGCLLNYLREMRHR 116 (283)
T ss_dssp SSSEEEEECCCTTCBHHHHHHCGGGC
T ss_pred CCCeEEEEeccCCCcHHHHHHHhccC
Confidence 77889999999999999999764433
No 240
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.15 E-value=3.7e-11 Score=122.20 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=81.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|++... .....+.+.+|+.++++++||||+++++++.. ....
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 106 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYS-----DGEI 106 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEE-----TTEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEE-----CCEE
Confidence 46799999999999999999999999999999999765 33445678999999999999999999998654 6789
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++|+|.+++...
T Consensus 107 ~lv~e~~~~~~L~~~l~~~ 125 (360)
T 3eqc_A 107 SICMEHMDGGSLDQVLKKA 125 (360)
T ss_dssp EEEECCCTTCBHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHc
Confidence 9999999999999998654
No 241
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.15 E-value=2.4e-11 Score=128.91 Aligned_cols=97 Identities=24% Similarity=0.476 Sum_probs=83.8
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.+....++|++.+.||+|+||.||+|.+..+++.||||.++.... ..+.|.+|+.+|++++|||||++++++. .
T Consensus 214 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~-----~ 287 (495)
T 1opk_A 214 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCT-----R 287 (495)
T ss_dssp CCBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----S
T ss_pred ccccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEe-----c
Confidence 344556778999999999999999999988899999999976433 4578999999999999999999999964 3
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+|||||++|+|.+++...
T Consensus 288 ~~~~~lv~E~~~~g~L~~~l~~~ 310 (495)
T 1opk_A 288 EPPFYIITEFMTYGNLLDYLREC 310 (495)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHS
T ss_pred CCcEEEEEEccCCCCHHHHHHhc
Confidence 67889999999999999999754
No 242
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.15 E-value=2.7e-11 Score=121.90 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=77.6
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
..++|++.+.||+|+||.||+|.+..+|+.||+|++..... ...+|++++.++ +||||+++++++ ++...
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~-----~~~~~ 90 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVY-----DDGKY 90 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEE-----ECSSE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEE-----EcCCE
Confidence 34679999999999999999999999999999999976432 345788888888 799999999985 45788
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.|+|||||++|+|.+++...
T Consensus 91 ~~lv~E~~~gg~L~~~i~~~ 110 (342)
T 2qr7_A 91 VYVVTELMKGGELLDKILRQ 110 (342)
T ss_dssp EEEEECCCCSCBHHHHHHTC
T ss_pred EEEEEeCCCCCcHHHHHHHc
Confidence 99999999999999988654
No 243
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.15 E-value=3.1e-11 Score=128.21 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=77.6
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..+.|++.+.||+|+||.||+|++..+++.||+|++.... ......+.+|+.+++.++||||+++++++. ...
T Consensus 35 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 109 (494)
T 3lij_A 35 LSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFE-----DKR 109 (494)
T ss_dssp HHHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred hhcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEE-----eCC
Confidence 3457999999999999999999999999999999997643 334567899999999999999999999954 478
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+|||||++|+|.+++...
T Consensus 110 ~~~lv~e~~~~g~L~~~~~~~ 130 (494)
T 3lij_A 110 NYYLVMECYKGGELFDEIIHR 130 (494)
T ss_dssp EEEEEEECCCSCBHHHHHHHH
T ss_pred EEEEEEecCCCCcHHHHHHHc
Confidence 899999999999998888654
No 244
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.14 E-value=5.4e-11 Score=117.11 Aligned_cols=91 Identities=24% Similarity=0.455 Sum_probs=76.9
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. .....
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH-----SDKKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----ETTEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEE-----eCCEE
Confidence 57999999999999999999999999999999997543 334567889999999999999999999954 47889
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++ ++.+++...
T Consensus 77 ~lv~e~~~~-~l~~~~~~~ 94 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSC 94 (292)
T ss_dssp EEEEECCSE-EHHHHHHHT
T ss_pred EEEEecCCC-CHHHHHHhC
Confidence 999999986 555555443
No 245
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.14 E-value=1.8e-11 Score=121.77 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=80.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ......+.+|+.++++++||||+++++++.... ....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~~ 89 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAGP 89 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TTEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CCCc
Confidence 468999999999999999999999999999999997642 233457889999999999999999999865411 1123
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..|+||||+++|+|.+++...
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~~ 110 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHTE 110 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHHH
T ss_pred ccEEEEecCCCCCHHHHHHhc
Confidence 459999999999999998654
No 246
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.14 E-value=2.5e-11 Score=121.80 Aligned_cols=97 Identities=26% Similarity=0.456 Sum_probs=78.0
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
.....++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++.
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----- 103 (329)
T 3gbz_A 29 SATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIH----- 103 (329)
T ss_dssp ---CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEE-----
T ss_pred cccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEe-----
Confidence 3445678999999999999999999999999999999997543 233567889999999999999999999954
Q ss_pred ccceeeeeecccccCCchhhhhccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....++||||+++ ++.+++....
T Consensus 104 ~~~~~~lv~e~~~~-~L~~~~~~~~ 127 (329)
T 3gbz_A 104 HNHRLHLIFEYAEN-DLKKYMDKNP 127 (329)
T ss_dssp ETTEEEEEEECCSE-EHHHHHHHCT
T ss_pred cCCEEEEEEecCCC-CHHHHHhhcC
Confidence 47889999999985 8988886543
No 247
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.14 E-value=3.9e-11 Score=117.25 Aligned_cols=95 Identities=21% Similarity=0.438 Sum_probs=82.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
..++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ..
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 83 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFE-----DS 83 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEE-----CS
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEc-----cC
Confidence 3467999999999999999999999899999999997542 223467899999999999999999999854 47
Q ss_pred ceeeeeecccccCCchhhhhccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
...++||||++++++.+++....
T Consensus 84 ~~~~lv~e~~~~~~L~~~l~~~~ 106 (278)
T 3cok_A 84 NYVYLVLEMCHNGEMNRYLKNRV 106 (278)
T ss_dssp SEEEEEEECCTTEEHHHHHHTCS
T ss_pred CeEEEEEecCCCCcHHHHHhhcc
Confidence 78999999999999999987654
No 248
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.14 E-value=3.4e-11 Score=121.08 Aligned_cols=99 Identities=21% Similarity=0.394 Sum_probs=83.3
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEECCCCc-----EEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGT-----TVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC 114 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~-----~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~ 114 (628)
.+....++|++.+.||+|+||.||+|.+..+++ .||+|.+.... ....+.+.+|+.+++.+ +||||+++++++
T Consensus 40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~ 119 (333)
T 2i1m_A 40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC 119 (333)
T ss_dssp GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 445566889999999999999999999976654 79999997643 33456789999999999 899999999985
Q ss_pred eeccccccceeeeeecccccCCchhhhhccc
Q 042887 115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
. .....++||||+++|+|.+++....
T Consensus 120 ~-----~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (333)
T 2i1m_A 120 T-----HGGPVLVITEYCCYGDLLNFLRRKS 145 (333)
T ss_dssp C-----SSSSCEEEEECCTTEEHHHHHHHHH
T ss_pred e-----cCCceEEEEecCCCCcHHHHHHHhc
Confidence 4 4678999999999999999997654
No 249
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.14 E-value=3.6e-11 Score=121.38 Aligned_cols=97 Identities=26% Similarity=0.464 Sum_probs=82.3
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSI 117 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 117 (628)
....++|++.+.||+|+||.||+|++. .+++.||+|+++... ....+.+.+|+.++++++||||+++++++.
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-- 120 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA-- 120 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC--
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc--
Confidence 345688999999999999999999986 345889999997643 334567999999999999999999999954
Q ss_pred cccccceeeeeecccccCCchhhhhccc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....++||||+++|+|.+++....
T Consensus 121 ---~~~~~~lv~e~~~~~~L~~~l~~~~ 145 (343)
T 1luf_A 121 ---VGKPMCLLFEYMAYGDLNEFLRSMS 145 (343)
T ss_dssp ---SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred ---cCCceEEEEecCCCCcHHHHHHHhC
Confidence 4678899999999999999997643
No 250
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.14 E-value=4e-11 Score=119.61 Aligned_cols=97 Identities=14% Similarity=0.209 Sum_probs=81.5
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..++|++.+.||+|+||.||+|++..+|+.||+|++........+.+.+|+.+++.++||||+++++++... .......
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~ 105 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEA 105 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCcee
Confidence 346799999999999999999999999999999999766555667899999999999999999999987531 1234678
Q ss_pred eeeecccccCCchhhhhc
Q 042887 126 ALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~ 143 (628)
++||||+++|+|.+++..
T Consensus 106 ~lv~e~~~~~~L~~~l~~ 123 (317)
T 2buj_A 106 WLLLPFFKRGTLWNEIER 123 (317)
T ss_dssp EEEEECCTTCBHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHH
Confidence 999999999999998875
No 251
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.13 E-value=6e-11 Score=117.94 Aligned_cols=93 Identities=24% Similarity=0.369 Sum_probs=79.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ....
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~~~~ 76 (311)
T 4agu_A 2 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR-----RKRR 76 (311)
T ss_dssp -CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-----ETTE
T ss_pred cccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheee-----cCCe
Confidence 367999999999999999999999999999999986543 233567889999999999999999999965 3778
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.++||||++++++.+++...
T Consensus 77 ~~lv~e~~~~~~l~~~~~~~ 96 (311)
T 4agu_A 77 LHLVFEYCDHTVLHELDRYQ 96 (311)
T ss_dssp EEEEEECCSEEHHHHHHHTS
T ss_pred EEEEEEeCCCchHHHHHhhh
Confidence 99999999999998877543
No 252
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.13 E-value=5.7e-11 Score=115.35 Aligned_cols=93 Identities=23% Similarity=0.393 Sum_probs=79.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|.+. ++..||+|++..... ..+.+.+|+.++++++||||+++++++ ......+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~-----~~~~~~~ 79 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVC-----SKEYPIY 79 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEE-----CSSSSEE
T ss_pred hhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEE-----ccCCceE
Confidence 567999999999999999999885 567899999976443 346789999999999999999999985 4477889
Q ss_pred eeecccccCCchhhhhcccc
Q 042887 127 LIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~ 146 (628)
+||||+++|++.+++.....
T Consensus 80 lv~e~~~~~~L~~~l~~~~~ 99 (268)
T 3sxs_A 80 IVTEYISNGCLLNYLRSHGK 99 (268)
T ss_dssp EEEECCTTCBHHHHHHHHGG
T ss_pred EEEEccCCCcHHHHHHHcCC
Confidence 99999999999999976543
No 253
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.13 E-value=2e-11 Score=121.56 Aligned_cols=96 Identities=30% Similarity=0.426 Sum_probs=81.2
Q ss_pred HHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSID 118 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~ 118 (628)
...++|.+.+.||+|+||.||+|.+. .+++.||+|++.... ....+.+.+|+.++++++||||+++++++.
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--- 96 (314)
T 2ivs_A 20 FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACS--- 96 (314)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC---
T ss_pred cchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEe---
Confidence 34578999999999999999999973 455889999997543 344577899999999999999999999854
Q ss_pred ccccceeeeeecccccCCchhhhhccc
Q 042887 119 FKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....++||||+++|+|.+++....
T Consensus 97 --~~~~~~lv~e~~~~~~L~~~l~~~~ 121 (314)
T 2ivs_A 97 --QDGPLLLIVEYAKYGSLRGFLRESR 121 (314)
T ss_dssp --SSSSCEEEEECCTTCBHHHHHHHTT
T ss_pred --cCCceEEEEeecCCCCHHHHHHHHh
Confidence 4778999999999999999997654
No 254
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.13 E-value=5e-11 Score=119.22 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=73.8
Q ss_pred CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccccceeeeeecc
Q 042887 53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFKALIYEY 131 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~~lv~e~ 131 (628)
.+.||+|+||.||+|.+..+|+.||+|++... ....+.+|+.+++.+. ||||+++++++. +....|+||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~-----~~~~~~lv~e~ 87 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFH-----DQLHTFLVMEL 87 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSEEEEEECC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEE-----cCCEEEEEEEc
Confidence 37899999999999999999999999998653 3356789999999997 999999999954 47889999999
Q ss_pred cccCCchhhhhcc
Q 042887 132 MKCGSSEDWMHQS 144 (628)
Q Consensus 132 ~~~g~L~~~l~~~ 144 (628)
+++|+|.+++...
T Consensus 88 ~~~~~L~~~l~~~ 100 (325)
T 3kn6_A 88 LNGGELFERIKKK 100 (325)
T ss_dssp CCSCBHHHHHHHC
T ss_pred cCCCcHHHHHHhc
Confidence 9999999998754
No 255
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.13 E-value=4.6e-11 Score=126.83 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=80.4
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
++|++.+.||+|+||.||+|++..+|+.||+|++.... ......+.+|+.++++++||||+++++++ ++...
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~-----~~~~~ 259 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAF-----ETKTD 259 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEE-----ECSSE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEE-----eeCCE
Confidence 67888899999999999999999999999999997542 23456788999999999999999999984 45788
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.|+||||++||+|.+++...
T Consensus 260 l~lVmE~~~gg~L~~~l~~~ 279 (543)
T 3c4z_A 260 LCLVMTIMNGGDIRYHIYNV 279 (543)
T ss_dssp EEEEECCCTTCBHHHHHHTS
T ss_pred EEEEEEeccCCCHHHHHHHh
Confidence 99999999999999988654
No 256
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.13 E-value=4.5e-11 Score=126.75 Aligned_cols=94 Identities=27% Similarity=0.373 Sum_probs=81.9
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++. ...
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~-----~~~ 99 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFE-----DKG 99 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSS
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEE-----eCC
Confidence 457999999999999999999999999999999996542 334577999999999999999999999954 478
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..|+|||||.+|++.+++....
T Consensus 100 ~~~lv~e~~~~~~L~~~~~~~~ 121 (484)
T 3nyv_A 100 YFYLVGEVYTGGELFDEIISRK 121 (484)
T ss_dssp EEEEEECCCCSCBHHHHHHTCS
T ss_pred EEEEEEecCCCCCHHHHHHhcC
Confidence 8999999999999998886543
No 257
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.13 E-value=5.6e-11 Score=116.42 Aligned_cols=91 Identities=22% Similarity=0.370 Sum_probs=79.5
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
++|++.+.||+|+||.||+|++..+|+.||+|++..... ...+.+.+|+.++++++||||+++++++. .
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-----~ 79 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFE-----N 79 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEE-----C
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheec-----C
Confidence 568999999999999999999998999999999975421 23567899999999999999999999854 4
Q ss_pred cceeeeeecccccCCchhhhhc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
....++||||+++++|.+++..
T Consensus 80 ~~~~~lv~e~~~~~~L~~~l~~ 101 (283)
T 3bhy_A 80 KTDVVLILELVSGGELFDFLAE 101 (283)
T ss_dssp SSEEEEEEECCCSCBHHHHHHH
T ss_pred CCeEEEEEeecCCCcHHHHHHh
Confidence 6789999999999999999864
No 258
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.13 E-value=6.5e-11 Score=116.23 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=81.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++... .......+.+|+..+..+ +||||+++++++.+ .+
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~-----~~ 84 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAE-----DD 84 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEE-----TT
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeec-----CC
Confidence 45799999999999999999999989999999999764 233456788999999999 89999999998654 77
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..++||||+++|+|.+++...
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~ 105 (289)
T 1x8b_A 85 HMLIQNEYCNGGSLADAISEN 105 (289)
T ss_dssp EEEEEEECCTTCBHHHHHHHH
T ss_pred eEEEEEEecCCCcHHHHHHhh
Confidence 899999999999999999754
No 259
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.13 E-value=1.4e-10 Score=115.04 Aligned_cols=104 Identities=35% Similarity=0.543 Sum_probs=87.5
Q ss_pred CCCcccHHHHHHHhCCCCcC------ceeecCCceeEEEEEECCCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcC
Q 042887 34 QFPMVSYADLSKATNNFSAS------NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVR 103 (628)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~------~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~ 103 (628)
..+.+++.+....+++|... +.||+|+||.||+|.+ +++.||+|.+.... ....+.+.+|+.+++.++
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 88 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQ 88 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcC
Confidence 35667888888888888766 8999999999999987 68899999986532 234567899999999999
Q ss_pred CCCcccccceeeeccccccceeeeeecccccCCchhhhhcc
Q 042887 104 HRNLIKIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 104 h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
||||+++++++. .....++||||+++|++.+++...
T Consensus 89 h~~i~~~~~~~~-----~~~~~~lv~e~~~~~~L~~~l~~~ 124 (307)
T 2nru_A 89 HENLVELLGFSS-----DGDDLCLVYVYMPNGSLLDRLSCL 124 (307)
T ss_dssp CTTBCCEEEEEC-----SSSSCEEEEECCTTCBHHHHHHTG
T ss_pred CCCeEEEEEEEe-----cCCceEEEEEecCCCcHHHHHHhc
Confidence 999999999854 467889999999999999998643
No 260
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.13 E-value=5.2e-11 Score=116.92 Aligned_cols=94 Identities=26% Similarity=0.459 Sum_probs=78.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-------chhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------GAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++..... ...+.+.+|+.++++++||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~---- 93 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMH---- 93 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEET----
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeec----
Confidence 4679999999999999999999999999999999865422 11267899999999999999999999853
Q ss_pred cccceeeeeecccccCCchhhhhccccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~ 147 (628)
.. .++||||+++|++.+++.+....
T Consensus 94 -~~--~~lv~e~~~~~~L~~~l~~~~~~ 118 (287)
T 4f0f_A 94 -NP--PRMVMEFVPCGDLYHRLLDKAHP 118 (287)
T ss_dssp -TT--TEEEEECCTTCBHHHHHHCTTSC
T ss_pred -CC--CeEEEEecCCCCHHHHHhcccCC
Confidence 22 36999999999999888665433
No 261
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.13 E-value=2.5e-11 Score=123.46 Aligned_cols=94 Identities=26% Similarity=0.358 Sum_probs=72.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHH-HhhcCCCCcccccceeeeccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEA-LSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~-l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
..++|++.+.||+|+||.||+|++..+++.||+|++++.. ......+.+|..+ ++.++||||+++++++ .+
T Consensus 36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~-----~~ 110 (373)
T 2r5t_A 36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSF-----QT 110 (373)
T ss_dssp CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEE-----EC
T ss_pred ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEE-----Ee
Confidence 3467999999999999999999999999999999997643 2334566777776 5778999999999985 45
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+||||+++|+|.+++.+.
T Consensus 111 ~~~~~lv~E~~~gg~L~~~l~~~ 133 (373)
T 2r5t_A 111 ADKLYFVLDYINGGELFYHLQRE 133 (373)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHH
T ss_pred CCEEEEEEeCCCCCcHHHHHHhc
Confidence 78999999999999999988654
No 262
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.12 E-value=4.9e-11 Score=125.51 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=73.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||||++... .....+++.+|+.+|++++|||||++++++....++....
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 36799999999999999999999999999999999653 2344577899999999999999999999976544455678
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.|+||||+. |++.+++...
T Consensus 132 ~~lv~e~~~-~~L~~~~~~~ 150 (458)
T 3rp9_A 132 LYVVLEIAD-SDFKKLFRTP 150 (458)
T ss_dssp EEEEECCCS-EEHHHHHHSS
T ss_pred EEEEEeccc-cchhhhcccC
Confidence 999999985 6888888654
No 263
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.12 E-value=3.7e-11 Score=116.81 Aligned_cols=94 Identities=22% Similarity=0.459 Sum_probs=79.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++ .++.||+|++.... ....+.+.+|+.++++++||||+++++++.+ .....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~ 83 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQS---PPAPH 83 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECT---TTSSS
T ss_pred HHHhHHHHHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEcc---CCCCC
Confidence 46799999999999999999999 58899999997643 3345679999999999999999999998653 22377
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.++||||+++|+|.+++....
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~ 104 (271)
T 3kmu_A 84 PTLITHWMPYGSLYNVLHEGT 104 (271)
T ss_dssp CEEEEECCTTCBHHHHHHSCS
T ss_pred eEeeecccCCCcHHHHHhhcc
Confidence 899999999999999997644
No 264
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.12 E-value=7.3e-11 Score=115.12 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=80.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+ ....
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 80 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNIQ 80 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEc-----CCEE
Confidence 467999999999999999999999899999999997543 3345778999999999999999999998643 6788
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++++|.+++...
T Consensus 81 ~lv~e~~~~~~L~~~l~~~ 99 (276)
T 2yex_A 81 YLFLEYCSGGELFDRIEPD 99 (276)
T ss_dssp EEEEECCTTEEGGGGSBTT
T ss_pred EEEEEecCCCcHHHHHhhc
Confidence 9999999999999988643
No 265
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.12 E-value=7.1e-11 Score=115.19 Aligned_cols=93 Identities=27% Similarity=0.396 Sum_probs=81.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++. ...
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 84 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIS-----TPT 84 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEe-----cCC
Confidence 468999999999999999999999899999999997542 234567899999999999999999999854 467
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..++||||+++++|.+++...
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~ 105 (276)
T 2h6d_A 85 DFFMVMEYVSGGELFDYICKH 105 (276)
T ss_dssp EEEEEEECCCSCBHHHHHHHH
T ss_pred eEEEEEeccCCCcHHHHHhcc
Confidence 899999999999999998654
No 266
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.12 E-value=6.2e-11 Score=124.15 Aligned_cols=93 Identities=28% Similarity=0.470 Sum_probs=79.7
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
...++|++.+.||+|+||.||+|.+ .|+.||||+++... ..+.|.+|+.+|++++||||+++++++.. ....
T Consensus 190 i~~~~~~~~~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~----~~~~ 261 (450)
T 1k9a_A 190 LNMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGG 261 (450)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEEC----TTSC
T ss_pred cChHHeEEEeeecCcCCeeEEEEEe--cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEc----CCCc
Confidence 3457889999999999999999999 47899999997543 45789999999999999999999998653 3447
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.|+|||||++|+|.+++....
T Consensus 262 ~~iv~e~~~~g~L~~~l~~~~ 282 (450)
T 1k9a_A 262 LYIVTEYMAKGSLVDYLRSRG 282 (450)
T ss_dssp EEEEEECCTTCBHHHHHHHHC
T ss_pred eEEEEEecCCCcHHHHHHhcC
Confidence 899999999999999997653
No 267
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.12 E-value=5.7e-11 Score=118.97 Aligned_cols=97 Identities=30% Similarity=0.497 Sum_probs=80.7
Q ss_pred hCCCCcCceeecCCceeEEEEEE----CCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKL----GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~----~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|++ ..+|+.||+|++........+.+.+|+.++++++||||+++++++.. ...
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYS---AGR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEe---cCC
Confidence 45689999999999999999994 56789999999987665566789999999999999999999998653 224
Q ss_pred ceeeeeecccccCCchhhhhcccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
...++||||+++|+|.+++.....
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~ 140 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKE 140 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTT
T ss_pred CceEEEEECCCCCCHHHHHHhccc
Confidence 578999999999999999976543
No 268
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.12 E-value=6.2e-11 Score=119.19 Aligned_cols=94 Identities=13% Similarity=0.204 Sum_probs=81.5
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
..++|.+.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++. ..
T Consensus 39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~ 113 (335)
T 2owb_A 39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DN 113 (335)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CS
T ss_pred cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-----cC
Confidence 3567999999999999999999999999999999997542 334567899999999999999999999854 47
Q ss_pred ceeeeeecccccCCchhhhhcc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
...|+||||++++++.+++...
T Consensus 114 ~~~~lv~e~~~~~~L~~~~~~~ 135 (335)
T 2owb_A 114 DFVFVVLELCRRRSLLELHKRR 135 (335)
T ss_dssp SEEEEEECCCTTCBHHHHHHHH
T ss_pred CeEEEEEecCCCCCHHHHHhcc
Confidence 7899999999999999987653
No 269
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.12 E-value=6.5e-11 Score=116.68 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=80.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|.+.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++. ..+
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-----~~~ 88 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFE-----DND 88 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeec-----cCC
Confidence 467999999999999999999999999999999997542 334567889999999999999999999954 477
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..++||||++++++.+++...
T Consensus 89 ~~~lv~e~~~~~~L~~~~~~~ 109 (294)
T 2rku_A 89 FVFVVLELCRRRSLLELHKRR 109 (294)
T ss_dssp EEEEEEECCTTCBHHHHHHHH
T ss_pred EEEEEEecCCCCCHHHHHHhc
Confidence 899999999999999887643
No 270
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.12 E-value=5.2e-11 Score=116.40 Aligned_cols=94 Identities=26% Similarity=0.384 Sum_probs=81.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
..++|++.+.||+|+||.||+|.+..+++.||+|++.... ......+.+|+.++++++||||+++++++. ..
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 81 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH-----DA 81 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CS
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEe-----cC
Confidence 3567999999999999999999999999999999996542 233467889999999999999999999954 47
Q ss_pred ceeeeeecccccCCchhhhhcc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
...++||||+++|++.+++...
T Consensus 82 ~~~~lv~e~~~~~~l~~~l~~~ 103 (279)
T 3fdn_A 82 TRVYLILEYAPLGTVYRELQKL 103 (279)
T ss_dssp SEEEEEECCCTTEEHHHHHHHH
T ss_pred CEEEEEEecCCCCcHHHHHHhc
Confidence 7899999999999999988654
No 271
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.12 E-value=7.4e-11 Score=116.71 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=81.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec--------c
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI--------D 118 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~--------~ 118 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|.+.... ...+.+.+|+.++++++||||+++++++.+. .
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 457999999999999999999999999999999996532 3456789999999999999999999987541 1
Q ss_pred ccccceeeeeecccccCCchhhhhccc
Q 042887 119 FKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.......|+||||+++|+|.+++....
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~ 110 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSEN 110 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccc
Confidence 133578899999999999999997544
No 272
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.12 E-value=7.9e-11 Score=116.29 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=80.8
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---------cchhhhHHHHHHHHhhcC-CCCcccccceee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---------KGAAKSFVTECEALSNVR-HRNLIKIITVCS 115 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---------~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~ 115 (628)
..++|++.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.+++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 3578999999999999999999999999999999997542 123456889999999996 999999999854
Q ss_pred eccccccceeeeeecccccCCchhhhhcc
Q 042887 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.....++||||+++|+|.+++...
T Consensus 95 -----~~~~~~lv~e~~~~~~L~~~l~~~ 118 (298)
T 1phk_A 95 -----TNTFFFLVFDLMKKGELFDYLTEK 118 (298)
T ss_dssp -----CSSEEEEEEECCTTCBHHHHHHHH
T ss_pred -----cCCeEEEEEeccCCCcHHHHHhcc
Confidence 478899999999999999998653
No 273
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.11 E-value=6.3e-11 Score=117.27 Aligned_cols=97 Identities=26% Similarity=0.423 Sum_probs=77.8
Q ss_pred hCCCCcCceeecCCceeEEEEE----ECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGK----LGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~----~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.+.|++.+.||+|+||.||+|+ ...+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.. ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~ 96 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTE---DG 96 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEec---CC
Confidence 3458899999999999999999 45678999999997543 3345778999999999999999999998753 23
Q ss_pred cceeeeeecccccCCchhhhhcccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
....++||||+++|+|.+++.....
T Consensus 97 ~~~~~lv~e~~~~~~L~~~l~~~~~ 121 (302)
T 4e5w_A 97 GNGIKLIMEFLPSGSLKEYLPKNKN 121 (302)
T ss_dssp -CCEEEEEECCTTCBHHHHHHHHTT
T ss_pred CceEEEEEEeCCCCcHHHHHHhccc
Confidence 3678999999999999999965443
No 274
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.11 E-value=7.4e-11 Score=122.95 Aligned_cols=97 Identities=21% Similarity=0.331 Sum_probs=81.9
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||||++... .....+++.+|+.+|++++||||+++++++....+.....
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 46899999999999999999999999999999999753 2344578899999999999999999999976533334477
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.|+||||+. |+|.+++...
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~ 123 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP 123 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS
T ss_pred EEEEEecCC-cCHHHHHhcc
Confidence 999999987 5899888654
No 275
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.11 E-value=3.2e-11 Score=126.36 Aligned_cols=93 Identities=26% Similarity=0.324 Sum_probs=72.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|.+..+|+.||+|++... .......+.+|+.+++.++||||+++++++.. ..
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~-----~~ 221 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-----HD 221 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEE-----TT
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEee-----CC
Confidence 46799999999999999999999999999999999753 23345678899999999999999999999654 67
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..++|||||++|+|.+++...
T Consensus 222 ~~~lv~e~~~~~~L~~~l~~~ 242 (446)
T 4ejn_A 222 RLCFVMEYANGGELFFHLSRE 242 (446)
T ss_dssp EEEEEECCCSSCBHHHHHHHH
T ss_pred EEEEEEeeCCCCcHHHHHHhc
Confidence 899999999999999888653
No 276
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.11 E-value=6e-11 Score=118.58 Aligned_cols=95 Identities=22% Similarity=0.286 Sum_probs=77.3
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..++|++.+.||+|+||.||+|++ .++.||||++..... ....+.+|+.++++++||||+++++++.... ......
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~~ 97 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQL--LNEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVDL 97 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEE
T ss_pred chhhchhhheecccCceEEEEEEE--CCCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCceE
Confidence 456899999999999999999998 479999999975432 3345677999999999999999999976421 113457
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++|||||++|+|.+++...
T Consensus 98 ~lv~e~~~~g~L~~~l~~~ 116 (322)
T 3soc_A 98 WLITAFHEKGSLSDFLKAN 116 (322)
T ss_dssp EEEEECCTTCBHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHhc
Confidence 9999999999999999653
No 277
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.10 E-value=1e-10 Score=116.27 Aligned_cols=93 Identities=23% Similarity=0.335 Sum_probs=79.1
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
..++|++.+.||+|+||.||+|.+..+|+.||+|++... .....+.+.+|+.++++++||||+++++++.. .
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~ 104 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIE-----D 104 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEE-----T
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----C
Confidence 346799999999999999999999989999999999753 23345678999999999999999999998654 6
Q ss_pred ceeeeeecccccCCchhhhhc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~ 143 (628)
...++||||+++|+|.+++..
T Consensus 105 ~~~~lv~e~~~~~~L~~~l~~ 125 (310)
T 2wqm_A 105 NELNIVLELADAGDLSRMIKH 125 (310)
T ss_dssp TEEEEEEECCCSCBHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHH
Confidence 789999999999999998864
No 278
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.10 E-value=7.6e-11 Score=115.79 Aligned_cols=91 Identities=23% Similarity=0.464 Sum_probs=77.2
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
++|++.+.||+|+||.||+|++ .+|+.||+|.+.... ....+.+.+|+.++++++||||+++++++. .....
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~ 75 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIH-----TKKRL 75 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEE-----CSSCE
T ss_pred ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEc-----cCCeE
Confidence 5799999999999999999999 678999999996543 233467889999999999999999999954 46789
Q ss_pred eeeecccccCCchhhhhccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~ 145 (628)
++||||+++ ++.+++....
T Consensus 76 ~lv~e~~~~-~l~~~~~~~~ 94 (288)
T 1ob3_A 76 VLVFEHLDQ-DLKKLLDVCE 94 (288)
T ss_dssp EEEEECCSE-EHHHHHHTST
T ss_pred EEEEEecCC-CHHHHHHhcc
Confidence 999999986 8888876543
No 279
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.10 E-value=9.1e-11 Score=116.50 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=81.0
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
...++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++..
T Consensus 31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~----- 105 (309)
T 2h34_A 31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEI----- 105 (309)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEE-----
T ss_pred cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEee-----
Confidence 34588999999999999999999999899999999997542 2234678999999999999999999998643
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+||||+++++|.+++...
T Consensus 106 ~~~~~lv~e~~~~~~L~~~l~~~ 128 (309)
T 2h34_A 106 DGQLYVDMRLINGVDLAAMLRRQ 128 (309)
T ss_dssp TTEEEEEEECCCCEEHHHHHHHH
T ss_pred CCeEEEEEEecCCCCHHHHHHhc
Confidence 67899999999999999998754
No 280
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.10 E-value=1.4e-10 Score=114.83 Aligned_cols=92 Identities=27% Similarity=0.371 Sum_probs=80.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.+.|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.. ....
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~ 95 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLK-----DTKL 95 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----CCeE
Confidence 456999999999999999999999999999999997653 3345778999999999999999999998654 6788
Q ss_pred eeeecccccCCchhhhhc
Q 042887 126 ALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~ 143 (628)
++||||++++++.+++..
T Consensus 96 ~lv~e~~~~~~L~~~~~~ 113 (303)
T 3a7i_A 96 WIIMEYLGGGSALDLLEP 113 (303)
T ss_dssp EEEEECCTTEEHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHhc
Confidence 999999999999998864
No 281
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.10 E-value=1.5e-10 Score=113.84 Aligned_cols=96 Identities=28% Similarity=0.393 Sum_probs=80.6
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..|.+.+.||+|+||.||+|.+..+++.||+|.+.... ....+.+.+|+.++++++||||+++++++... .......
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~ 104 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCI 104 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceE
Confidence 34788889999999999999999999999999987542 34456789999999999999999999986541 2335678
Q ss_pred eeeecccccCCchhhhhcc
Q 042887 126 ALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~ 144 (628)
++||||+++|+|.+++...
T Consensus 105 ~lv~e~~~~~~L~~~l~~~ 123 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRF 123 (290)
T ss_dssp EEEEECCCSCBHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHc
Confidence 9999999999999998653
No 282
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.09 E-value=1.1e-10 Score=113.83 Aligned_cols=92 Identities=27% Similarity=0.354 Sum_probs=68.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++. ...
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 86 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIK-----SKD 86 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEE-----CSS
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEe-----cCC
Confidence 468999999999999999999999999999999997542 234567889999999999999999999954 467
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..++||||+ ++++.+++...
T Consensus 87 ~~~lv~e~~-~~~l~~~~~~~ 106 (275)
T 2eue_A 87 EIIMVIEYA-GNELFDYIVQR 106 (275)
T ss_dssp CEEEEEECC-CEEHHHHHHTS
T ss_pred eEEEEehhc-CCcHHHHHHhc
Confidence 889999999 56777777543
No 283
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.09 E-value=9.4e-11 Score=116.48 Aligned_cols=94 Identities=23% Similarity=0.484 Sum_probs=76.8
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++.+.||+|+||.||+|++. +|+.||+|++.... ....+.+.+|+.++++++||||+++++++ ....
T Consensus 19 l~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~-----~~~~ 92 (311)
T 3niz_A 19 LMEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI-----HSER 92 (311)
T ss_dssp SSCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEE-----CCSS
T ss_pred hHhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEE-----ccCC
Confidence 3578999999999999999999994 58999999996542 33456788999999999999999999995 4477
Q ss_pred eeeeeecccccCCchhhhhcccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
..++||||+++ ++.+++.....
T Consensus 93 ~~~lv~e~~~~-~l~~~~~~~~~ 114 (311)
T 3niz_A 93 CLTLVFEFMEK-DLKKVLDENKT 114 (311)
T ss_dssp CEEEEEECCSE-EHHHHHHTCTT
T ss_pred EEEEEEcCCCC-CHHHHHHhccC
Confidence 89999999985 77777765443
No 284
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.09 E-value=7.7e-11 Score=115.50 Aligned_cols=93 Identities=23% Similarity=0.368 Sum_probs=80.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+++++.++||||+++++++. ...
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~ 87 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFH-----DRK 87 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----CSS
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEE-----cCC
Confidence 467999999999999999999999899999999996542 233467899999999999999999999954 477
Q ss_pred eeeeeecccccCCchhhhhcc
Q 042887 124 FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..++||||+++|++.+++...
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~ 108 (284)
T 2vgo_A 88 RIYLMLEFAPRGELYKELQKH 108 (284)
T ss_dssp EEEEEECCCTTEEHHHHHHHH
T ss_pred EEEEEEEeCCCCcHHHHHHhc
Confidence 899999999999999988654
No 285
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.09 E-value=1.1e-10 Score=114.60 Aligned_cols=96 Identities=25% Similarity=0.314 Sum_probs=82.6
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
....++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+.+|+.++++++||||+++++++. .
T Consensus 18 ~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~ 92 (287)
T 2wei_A 18 GTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILE-----D 92 (287)
T ss_dssp HHHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEE-----C
T ss_pred HHHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEe-----C
Confidence 344578999999999999999999999899999999997543 334567899999999999999999999854 4
Q ss_pred cceeeeeecccccCCchhhhhcc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....++||||++++++.+++...
T Consensus 93 ~~~~~lv~e~~~~~~L~~~l~~~ 115 (287)
T 2wei_A 93 SSSFYIVGELYTGGELFDEIIKR 115 (287)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHH
T ss_pred CCeEEEEEEccCCCCHHHHHHhc
Confidence 67899999999999998887643
No 286
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.09 E-value=5.7e-11 Score=120.01 Aligned_cols=101 Identities=21% Similarity=0.415 Sum_probs=81.9
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeecc-ccchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVC 114 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~ 114 (628)
++....++|++.+.||+|+||.||+|.+. .+++.||+|++... .....+.+.+|+.+++++ .||||+++++++
T Consensus 39 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 118 (344)
T 1rjb_A 39 KWEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGAC 118 (344)
T ss_dssp GGBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred CcccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 34455688999999999999999999973 35678999999754 234557899999999999 899999999985
Q ss_pred eeccccccceeeeeecccccCCchhhhhccccc
Q 042887 115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~ 147 (628)
. .....++||||+++|+|.+++......
T Consensus 119 ~-----~~~~~~lv~e~~~~g~L~~~l~~~~~~ 146 (344)
T 1rjb_A 119 T-----LSGPIYLIFEYCCYGDLLNYLRSKREK 146 (344)
T ss_dssp C-----SSSSCEEEEECCTTCBHHHHHHTTTTC
T ss_pred e-----eCCccEEEEecCCCCcHHHHHhhcccc
Confidence 4 467899999999999999999876544
No 287
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.08 E-value=9.5e-11 Score=117.13 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=75.8
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVRHRNLIKIITVCSSI 117 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 117 (628)
..++|++.+.||+|+||.||+|.+..+++.||||++.... ......+.+|++++++++||||+++++++.
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-- 85 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-- 85 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEE--
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEc--
Confidence 3467999999999999999999999999999999986532 122346889999999999999999999854
Q ss_pred cccccceeeeeecccccCCchhhhhcc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+||||+++|+|.+++...
T Consensus 86 ----~~~~~lv~e~~~~~~L~~~~~~~ 108 (322)
T 2ycf_A 86 ----AEDYYIVLELMEGGELFDKVVGN 108 (322)
T ss_dssp ----SSSEEEEEECCTTEETHHHHSTT
T ss_pred ----CCceEEEEecCCCCcHHHHHhcc
Confidence 23479999999999999988643
No 288
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.08 E-value=8.5e-11 Score=118.65 Aligned_cols=92 Identities=28% Similarity=0.364 Sum_probs=77.4
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
+.|+..+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|++++++++||||+++++++.. ...
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~ 128 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLR-----EHT 128 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CCe
Confidence 45888999999999999999999999999999997543 2334678999999999999999999998654 678
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.++||||+. |++.+++....
T Consensus 129 ~~lv~e~~~-g~l~~~l~~~~ 148 (348)
T 1u5q_A 129 AWLVMEYCL-GSASDLLEVHK 148 (348)
T ss_dssp EEEEEECCS-EEHHHHHHHHT
T ss_pred EEEEEecCC-CCHHHHHHHhc
Confidence 999999998 57777775433
No 289
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.08 E-value=1e-10 Score=117.55 Aligned_cols=97 Identities=22% Similarity=0.412 Sum_probs=80.1
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEEC-------CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCccccccee
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLG-------ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVC 114 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~-------~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~ 114 (628)
....++|++.+.||+|+||.||+|++. .+++.||+|++.... ....+.+.+|+.+++.+ +||||+++++++
T Consensus 31 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 110 (334)
T 2pvf_A 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGAC 110 (334)
T ss_dssp BCCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cCCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEE
Confidence 344678999999999999999999975 356789999997543 33456789999999999 899999999985
Q ss_pred eeccccccceeeeeecccccCCchhhhhccc
Q 042887 115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
. .....++||||+++|+|.+++....
T Consensus 111 ~-----~~~~~~lv~e~~~~~~L~~~l~~~~ 136 (334)
T 2pvf_A 111 T-----QDGPLYVIVEYASKGNLREYLRARR 136 (334)
T ss_dssp C-----SSSCCEEEEECCTTCBHHHHHHTTS
T ss_pred c-----cCCceEEEEECCCCCcHHHHHHHhc
Confidence 4 4678899999999999999997654
No 290
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.08 E-value=7.7e-11 Score=118.11 Aligned_cols=95 Identities=23% Similarity=0.386 Sum_probs=76.4
Q ss_pred HhCCCCcCceeecCCceeEEEEE-----ECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGK-----LGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~-----~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
..++|++.+.||+|+||.||+|+ ...+++.||+|.+... .......+.+|+.++++++||||+++++++.
T Consensus 28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~---- 103 (327)
T 2yfx_A 28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSL---- 103 (327)
T ss_dssp CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEc----
Confidence 35789999999999999999999 4457789999999654 3344567899999999999999999999854
Q ss_pred cccceeeeeecccccCCchhhhhccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....|+||||+++|+|.+++....
T Consensus 104 -~~~~~~lv~e~~~~~~L~~~l~~~~ 128 (327)
T 2yfx_A 104 -QSLPRFILMELMAGGDLKSFLRETR 128 (327)
T ss_dssp -SSSSCEEEEECCTTEEHHHHHHHTS
T ss_pred -CCCCcEEEEecCCCCcHHHHHHhhc
Confidence 4677899999999999999997654
No 291
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.08 E-value=3.1e-11 Score=120.76 Aligned_cols=101 Identities=25% Similarity=0.399 Sum_probs=83.8
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEEEC-----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccce
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGKLG-----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITV 113 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~-----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~ 113 (628)
..++....++|++.+.||+|+||.||+|++. .+++.||+|.+.... ......+.+|+.+++.++||||++++++
T Consensus 17 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~ 96 (322)
T 1p4o_A 17 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV 96 (322)
T ss_dssp CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred hhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence 3455556788999999999999999999875 356789999997543 2344578999999999999999999998
Q ss_pred eeeccccccceeeeeecccccCCchhhhhccc
Q 042887 114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 114 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
+. .....++||||+++|+|.+++....
T Consensus 97 ~~-----~~~~~~lv~e~~~~~~L~~~l~~~~ 123 (322)
T 1p4o_A 97 VS-----QGQPTLVIMELMTRGDLKSYLRSLR 123 (322)
T ss_dssp EC-----SSSSCEEEEECCTTCBHHHHHHHHH
T ss_pred Ec-----cCCccEEEEEeCCCCcHHHHHHHhc
Confidence 54 4678899999999999999997644
No 292
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.08 E-value=2e-10 Score=116.83 Aligned_cols=104 Identities=21% Similarity=0.303 Sum_probs=83.5
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-----------chhhhHHHHHHHHhhcCCCCcc
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-----------GAAKSFVTECEALSNVRHRNLI 108 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----------~~~~~~~~E~~~l~~l~h~nIv 108 (628)
..+.....++|++.+.||+|+||.||+|.+.. |+.||+|++..... ...+.+.+|+.++++++||||+
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 44566778999999999999999999999854 89999999865321 1136789999999999999999
Q ss_pred cccceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887 109 KIITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
++++++...+-......|+||||+. |++.+++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~ 128 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQR 128 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTT
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcc
Confidence 9999976533344567899999998 57888776544
No 293
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.08 E-value=6.1e-11 Score=124.45 Aligned_cols=96 Identities=24% Similarity=0.403 Sum_probs=81.7
Q ss_pred HHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 41 ADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 41 ~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
..+....++|++.+.||+|+||.||+|.+. ++..||||+++... ...+.|.+|+.+|++++|||||++++++.
T Consensus 181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~----- 253 (454)
T 1qcf_A 181 DAWEIPRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT----- 253 (454)
T ss_dssp TCSBCCGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-----
T ss_pred cceeechHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-----
Confidence 445566788999999999999999999995 46789999997644 34678999999999999999999998853
Q ss_pred ccceeeeeecccccCCchhhhhcc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....++|||||++|+|.+++...
T Consensus 254 -~~~~~lv~e~~~~g~L~~~l~~~ 276 (454)
T 1qcf_A 254 -KEPIYIITEFMAKGSLLDFLKSD 276 (454)
T ss_dssp -SSSCEEEECCCTTCBHHHHHHSH
T ss_pred -CCccEEEEeecCCCcHHHHHHhc
Confidence 45689999999999999999754
No 294
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.08 E-value=1.3e-10 Score=115.72 Aligned_cols=93 Identities=23% Similarity=0.350 Sum_probs=75.3
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
...+.|++.+.||+|+||.||+|.+..+|+.||+|.+.... ..+.+.+|+.+++.++||||+++++++.. ...
T Consensus 26 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 98 (314)
T 3com_A 26 QPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFK-----NTD 98 (314)
T ss_dssp ----CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEE-----TTE
T ss_pred cchhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEe-----CCE
Confidence 34578999999999999999999999999999999997643 34678999999999999999999998653 678
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.++||||+++|+|.+++...
T Consensus 99 ~~lv~e~~~~~~L~~~~~~~ 118 (314)
T 3com_A 99 LWIVMEYCGAGSVSDIIRLR 118 (314)
T ss_dssp EEEEEECCTTEEHHHHHHHH
T ss_pred EEEEeecCCCCCHHHHHHhc
Confidence 89999999999999998643
No 295
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.08 E-value=4.7e-11 Score=118.85 Aligned_cols=99 Identities=23% Similarity=0.395 Sum_probs=82.6
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccceee
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITVCS 115 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~ 115 (628)
+....++|++.+.||+|+||.||+|.+ ..+++.||+|++.... ....+.+.+|+.+++++ +||||+++++++.
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~ 97 (313)
T 1t46_A 18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT 97 (313)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe
Confidence 334457899999999999999999985 3567889999997643 23457799999999999 8999999999854
Q ss_pred eccccccceeeeeecccccCCchhhhhcccc
Q 042887 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
..+..++||||+++|+|.+++.....
T Consensus 98 -----~~~~~~lv~e~~~~~~L~~~l~~~~~ 123 (313)
T 1t46_A 98 -----IGGPTLVITEYCCYGDLLNFLRRKRD 123 (313)
T ss_dssp -----SSSSCEEEEECCTTEEHHHHHHHTTT
T ss_pred -----cCCCcEEEEecCCCCCHHHHHHhccc
Confidence 46788999999999999999976653
No 296
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.08 E-value=1.4e-10 Score=113.47 Aligned_cols=94 Identities=23% Similarity=0.441 Sum_probs=79.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc-------
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF------- 119 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~------- 119 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|.+.... +.+.+|++++++++||||+++++++...++
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 457999999999999999999998899999999987543 467799999999999999999998654221
Q ss_pred ----cccceeeeeecccccCCchhhhhcc
Q 042887 120 ----KGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 120 ----~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
......++||||+++|+|.+++...
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 114 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKR 114 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHG
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhc
Confidence 2345689999999999999999754
No 297
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.07 E-value=1.5e-10 Score=112.17 Aligned_cols=92 Identities=24% Similarity=0.442 Sum_probs=79.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|.+. +++.||+|.+..... ..+.+.+|+++++.++||||+++++++. .....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~~~~~ 79 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCL-----EQAPIC 79 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEEC-----SSSSCE
T ss_pred hhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----cCCCeE
Confidence 467899999999999999999995 678899999976543 3467899999999999999999999854 467889
Q ss_pred eeecccccCCchhhhhccc
Q 042887 127 LIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~ 145 (628)
+||||+++|+|.+++....
T Consensus 80 lv~e~~~~~~L~~~~~~~~ 98 (267)
T 3t9t_A 80 LVTEFMEHGCLSDYLRTQR 98 (267)
T ss_dssp EEECCCTTCBHHHHHHHTT
T ss_pred EEEeCCCCCcHHHHHhhCc
Confidence 9999999999999997654
No 298
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.07 E-value=1.2e-10 Score=113.36 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=73.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|.+ .|+.||+|++.... ....+.+.+|+++++.++||||+++++++. ..
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 78 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCL-----KE 78 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----CC
T ss_pred hhheeeeeeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe-----cC
Confidence 46799999999999999999998 58899999986542 233467889999999999999999999954 46
Q ss_pred ceeeeeecccccCCchhhhhc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~ 143 (628)
...++||||++++++.+++..
T Consensus 79 ~~~~lv~e~~~~~~L~~~~~~ 99 (271)
T 3dtc_A 79 PNLCLVMEFARGGPLNRVLSG 99 (271)
T ss_dssp --CEEEEECCTTEEHHHHHTS
T ss_pred CceEEEEEcCCCCCHHHHhhc
Confidence 788999999999999988853
No 299
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.07 E-value=1.3e-10 Score=117.30 Aligned_cols=95 Identities=21% Similarity=0.433 Sum_probs=73.3
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
...++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~----- 81 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAF----- 81 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEE-----
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEE-----
Confidence 34578999999999999999999999999999999997532 12245788999999999999999999985
Q ss_pred cccceeeeeecccccCCchhhhhccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
......++||||+++ ++.+++....
T Consensus 82 ~~~~~~~lv~e~~~~-~l~~~~~~~~ 106 (346)
T 1ua2_A 82 GHKSNISLVFDFMET-DLEVIIKDNS 106 (346)
T ss_dssp CCTTCCEEEEECCSE-EHHHHHTTCC
T ss_pred eeCCceEEEEEcCCC-CHHHHHHhcC
Confidence 447789999999996 7888876544
No 300
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.07 E-value=1.4e-10 Score=121.71 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=78.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|++..+|+.||||++... .....+++.+|+.+|+.++|||||++++++... .++...
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 47899999999999999999999999999999999754 334567789999999999999999999997542 123446
Q ss_pred eeeeeecccccCCchhhhh
Q 042887 124 FKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~ 142 (628)
..|+||||++++ +.+.+.
T Consensus 141 ~~~lv~E~~~~~-l~~~~~ 158 (464)
T 3ttj_A 141 DVYLVMELMDAN-LCQVIQ 158 (464)
T ss_dssp EEEEEEECCSEE-HHHHHT
T ss_pred eEEEEEeCCCCC-HHHHHh
Confidence 789999999875 555543
No 301
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.06 E-value=1.3e-10 Score=116.71 Aligned_cols=92 Identities=26% Similarity=0.440 Sum_probs=79.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++.+ ...
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~ 98 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-----KKR 98 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-----CCE
Confidence 467999999999999999999999999999999986543 2334568899999999999999999999653 778
Q ss_pred eeeeecccccCCchhhhhc
Q 042887 125 KALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~ 143 (628)
.++||||++++++.++...
T Consensus 99 ~~lv~e~~~~~~l~~~~~~ 117 (331)
T 4aaa_A 99 WYLVFEFVDHTILDDLELF 117 (331)
T ss_dssp EEEEEECCSEEHHHHHHHS
T ss_pred EEEEEecCCcchHHHHHhh
Confidence 9999999999988877543
No 302
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.06 E-value=3.7e-11 Score=120.91 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=70.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcC---------CCCccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVR---------HRNLIK 109 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~nIv~ 109 (628)
.++|++.+.||+|+||.||+|++ +|+.||||++.... ....+.+.+|+.++++++ |||||+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 46799999999999999999999 78999999997642 123367899999999886 555555
Q ss_pred ccceee-----------------e--------ccccccceeeeeecccccCCchhhhh
Q 042887 110 IITVCS-----------------S--------IDFKGVDFKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 110 l~~~~~-----------------~--------~~~~~~~~~~lv~e~~~~g~L~~~l~ 142 (628)
+.+++. + .++......|+|||||++|++.+.+.
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~ 154 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR 154 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH
Confidence 544321 1 00113678999999999998766664
No 303
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.06 E-value=5e-11 Score=119.23 Aligned_cols=93 Identities=23% Similarity=0.484 Sum_probs=76.5
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
++|++.+.||+|+||.||+|++..+++.||+|++..... .....+.+|+.+++.++||||+++++++. .....+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-----~~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIH-----TEKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEE-----CSSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEe-----eCCEEE
Confidence 579999999999999999999999999999999975432 23345678999999999999999999954 477899
Q ss_pred eeecccccCCchhhhhcccc
Q 042887 127 LIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~ 146 (628)
+||||++ |++.+++.....
T Consensus 77 lv~e~~~-~~l~~~~~~~~~ 95 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDCGN 95 (324)
T ss_dssp EEEECCS-EEHHHHHHHTTT
T ss_pred EEecccc-cCHHHHHHhcCC
Confidence 9999998 488888876543
No 304
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.06 E-value=1.5e-10 Score=116.22 Aligned_cols=91 Identities=23% Similarity=0.285 Sum_probs=78.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ..+.+.+|+.+++.+ +||||+++++++.. ....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-----~~~~ 80 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPC-----GKYN 80 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEE-----TTEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEec-----CCcc
Confidence 367999999999999999999999999999999987543 235688999999999 89999999998543 6788
Q ss_pred eeeecccccCCchhhhhccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~ 145 (628)
++||||+ +|+|.+++....
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~ 99 (330)
T 2izr_A 81 AMVLELL-GPSLEDLFDLCD 99 (330)
T ss_dssp EEEEECC-CCBHHHHHHHTT
T ss_pred EEEEEeC-CCCHHHHHHHcC
Confidence 9999999 999999987653
No 305
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.06 E-value=2e-10 Score=116.77 Aligned_cols=95 Identities=22% Similarity=0.392 Sum_probs=80.5
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------chhhhHHHHHHHHhhc-CCCCccccccee
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------GAAKSFVTECEALSNV-RHRNLIKIITVC 114 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~nIv~l~~~~ 114 (628)
....++|++.+.||+|+||.||+|++..+|+.||||++..... ...+.+.+|+.+++++ +||||+++++++
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~ 169 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSY 169 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEE
Confidence 3345679999999999999999999988999999999875431 1245688999999999 799999999985
Q ss_pred eeccccccceeeeeecccccCCchhhhhc
Q 042887 115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
. .....++||||+++|+|.+++..
T Consensus 170 ~-----~~~~~~lv~e~~~g~~L~~~l~~ 193 (365)
T 2y7j_A 170 E-----SSSFMFLVFDLMRKGELFDYLTE 193 (365)
T ss_dssp E-----BSSEEEEEECCCTTCBHHHHHHH
T ss_pred e-----eCCEEEEEEEeCCCCcHHHHHHh
Confidence 4 47889999999999999999864
No 306
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.06 E-value=1.6e-10 Score=115.81 Aligned_cols=93 Identities=29% Similarity=0.540 Sum_probs=77.8
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEE--EEEEeecc-ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccc
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTV--AVKVMNLK-QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~--avK~~~~~-~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~ 123 (628)
++|++.+.||+|+||.||+|++..+|+.+ |+|.+... .....+.+.+|+++++++ +||||+++++++. ...
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~-----~~~ 99 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACE-----HRG 99 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEE-----ETT
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeee-----eCC
Confidence 57999999999999999999998888765 99988753 334557799999999999 8999999999964 377
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..|+||||+++|+|.+++....
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~ 121 (327)
T 1fvr_A 100 YLYLAIEYAPHGNLLDFLRKSR 121 (327)
T ss_dssp EEEEEECCCTTCBHHHHHHTTC
T ss_pred ceEEEEecCCCCCHHHHHHhcc
Confidence 8999999999999999997654
No 307
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.06 E-value=9.4e-11 Score=119.21 Aligned_cols=103 Identities=22% Similarity=0.238 Sum_probs=85.6
Q ss_pred CcccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-----CCCcccc
Q 042887 36 PMVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-----HRNLIKI 110 (628)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-----h~nIv~l 110 (628)
..+++.+.....++|++.+.||+|+||.||+|++..+++.||+|++.... ...+.+.+|+.+++.+. ||||+++
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~h~~iv~~ 101 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADILKKIQNDDINNNNIVKY 101 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence 34555555666789999999999999999999999999999999987432 23456788999999986 9999999
Q ss_pred cceeeeccccccceeeeeecccccCCchhhhhccc
Q 042887 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 111 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
++++.. .+..++||||+ +++|.+++....
T Consensus 102 ~~~~~~-----~~~~~lv~e~~-~~~L~~~~~~~~ 130 (360)
T 3llt_A 102 HGKFMY-----YDHMCLIFEPL-GPSLYEIITRNN 130 (360)
T ss_dssp EEEEEE-----TTEEEEEECCC-CCBHHHHHHHTT
T ss_pred cceeeE-----CCeeEEEEcCC-CCCHHHHHHhcC
Confidence 998653 67899999999 899999987544
No 308
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.06 E-value=1.3e-10 Score=118.32 Aligned_cols=96 Identities=23% Similarity=0.308 Sum_probs=73.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~ 123 (628)
.+.|++.+.||+|+||.||+|.+..+|+.||||++... .....+++.+|+.+++.++||||+++++++... ......
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 46799999999999999999999999999999998653 233456789999999999999999999987541 112235
Q ss_pred eeeeeecccccCCchhhhhc
Q 042887 124 FKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~ 143 (628)
..|+||||+ +++|.+++..
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~ 122 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH 122 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH
T ss_pred eEEEEEecC-CCCHHHHHhc
Confidence 679999999 7899988865
No 309
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.05 E-value=1.6e-10 Score=118.48 Aligned_cols=98 Identities=20% Similarity=0.381 Sum_probs=81.4
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECC-------CCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccce
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGE-------TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIITV 113 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~-------~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~~ 113 (628)
+....++|.+.+.||+|+||.||+|++.. .+..||+|++.... ....+.+.+|+++++.+ +||||++++++
T Consensus 64 ~~i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~ 143 (382)
T 3tt0_A 64 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGA 143 (382)
T ss_dssp TBCCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred cccchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheee
Confidence 34456789999999999999999999753 33579999997643 34457789999999999 89999999999
Q ss_pred eeeccccccceeeeeecccccCCchhhhhccc
Q 042887 114 CSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 114 ~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
+. .....++||||+++|+|.+++....
T Consensus 144 ~~-----~~~~~~lv~e~~~~g~L~~~l~~~~ 170 (382)
T 3tt0_A 144 CT-----QDGPLYVIVEYASKGNLREYLQARR 170 (382)
T ss_dssp EC-----SSSSCEEEEECCTTCBHHHHHHHTC
T ss_pred ec-----cCCceEEEEEecCCCcHHHHHHHhc
Confidence 54 4778899999999999999997654
No 310
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.05 E-value=1.4e-10 Score=115.96 Aligned_cols=101 Identities=22% Similarity=0.405 Sum_probs=72.1
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCc---EEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
...++|++.+.||+|+||.||+|++..+++ .||+|+++.. .....+.+.+|+.++++++||||+++++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 345689999999999999999999877665 7999999754 33456789999999999999999999998754111
Q ss_pred -cccceeeeeecccccCCchhhhhccc
Q 042887 120 -KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 -~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
......++||||+++|+|.+++....
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~ 126 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASR 126 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHH
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhh
Confidence 11123489999999999999986543
No 311
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.05 E-value=7.3e-11 Score=118.54 Aligned_cols=94 Identities=24% Similarity=0.402 Sum_probs=80.1
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------chhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------GAAKSFVTECEALSNVRHRNLIKIITVCSSI 117 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 117 (628)
..++|++.+.||+|+||.||+|++..+++.||+|++..... ...+.+.+|+.++++++||||+++++++.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~-- 99 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFE-- 99 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEE--
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEe--
Confidence 34679999999999999999999999999999999976421 23456889999999999999999999954
Q ss_pred cccccceeeeeecccccC-Cchhhhhcc
Q 042887 118 DFKGVDFKALIYEYMKCG-SSEDWMHQS 144 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g-~L~~~l~~~ 144 (628)
.....++||||+.+| ++.+++...
T Consensus 100 ---~~~~~~lv~e~~~~g~~l~~~~~~~ 124 (335)
T 3dls_A 100 ---NQGFFQLVMEKHGSGLDLFAFIDRH 124 (335)
T ss_dssp ---CSSEEEEEEECCTTSCBHHHHHHTC
T ss_pred ---eCCEEEEEEEeCCCCccHHHHHHhc
Confidence 478899999999777 888888654
No 312
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.05 E-value=6.3e-11 Score=115.94 Aligned_cols=94 Identities=20% Similarity=0.323 Sum_probs=78.2
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
..++|++.+.||+|+||.||+|.+..+ +..||+|...... ....+.+.+|+.++++++||||+++++++.
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------ 86 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT------ 86 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc------
Confidence 456899999999999999999998654 4569999986543 344567899999999999999999998853
Q ss_pred cceeeeeecccccCCchhhhhccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
....++||||+++|+|.+++....
T Consensus 87 ~~~~~lv~e~~~~~~L~~~l~~~~ 110 (281)
T 1mp8_A 87 ENPVWIIMELCTLGELRSFLQVRK 110 (281)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHTT
T ss_pred cCccEEEEecCCCCCHHHHHHhcC
Confidence 456799999999999999997554
No 313
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=114.92 Aligned_cols=88 Identities=30% Similarity=0.537 Sum_probs=75.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|.+ .++.||+|.+... ...+.+.+|+.++++++||||+++++++. +..+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~ 75 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKW--RAKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVC 75 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEE--TTEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTE
T ss_pred HhHeeeeeEeecCCCceEEEEEE--CCeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcE
Confidence 35788999999999999999998 5788999998643 34567899999999999999999998842 3478
Q ss_pred eeecccccCCchhhhhccc
Q 042887 127 LIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~ 145 (628)
+||||+++|+|.+++....
T Consensus 76 lv~e~~~~~~L~~~l~~~~ 94 (307)
T 2eva_A 76 LVMEYAEGGSLYNVLHGAE 94 (307)
T ss_dssp EEEECCTTCBHHHHHHCSS
T ss_pred EEEEcCCCCCHHHHHhccC
Confidence 9999999999999997543
No 314
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.05 E-value=9.9e-11 Score=122.70 Aligned_cols=96 Identities=25% Similarity=0.436 Sum_probs=80.5
Q ss_pred HHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 41 ADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 41 ~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
..+....++|++.+.||+|+||.||+|.+.. +..||||+++.... ..+.|.+|+.+|++++||||+++++++.
T Consensus 177 ~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~----- 249 (452)
T 1fmk_A 177 DAWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS----- 249 (452)
T ss_dssp TCSBCCGGGEEEEEEEEECSSCEEEEEEETT-TEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-----
T ss_pred cccccChhHceeeeeecCCCCeEEEEEEECC-CceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEc-----
Confidence 3455567789999999999999999999954 56799999976432 3467999999999999999999999853
Q ss_pred ccceeeeeecccccCCchhhhhcc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....++||||+++|+|.+++...
T Consensus 250 -~~~~~iv~e~~~~gsL~~~l~~~ 272 (452)
T 1fmk_A 250 -EEPIYIVTEYMSKGSLLDFLKGE 272 (452)
T ss_dssp -SSSCEEEECCCTTCBHHHHHSHH
T ss_pred -CCceEEEehhhcCCCHHHHHHhc
Confidence 25689999999999999999753
No 315
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.05 E-value=2.7e-10 Score=112.84 Aligned_cols=93 Identities=24% Similarity=0.423 Sum_probs=76.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc----cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.++++++||||+++++++.. +..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 80 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EEK 80 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C--
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CCC
Confidence 478999999999999999999999999999999997542 2345678999999999999999999998642 345
Q ss_pred ceeeeeecccccCCchhhhhc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~ 143 (628)
...++||||+++| +.+++..
T Consensus 81 ~~~~lv~e~~~~~-l~~~~~~ 100 (305)
T 2wtk_C 81 QKMYMVMEYCVCG-MQEMLDS 100 (305)
T ss_dssp -CEEEEEECCSEE-HHHHHHH
T ss_pred CeEEEEehhccCC-HHHHHHh
Confidence 6889999999987 6666644
No 316
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.05 E-value=1.1e-10 Score=116.38 Aligned_cols=103 Identities=19% Similarity=0.375 Sum_probs=83.9
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEEE-----CCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhc-CCCCcccccc
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGKL-----GETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNV-RHRNLIKIIT 112 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~-----~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~nIv~l~~ 112 (628)
...+....++|++.+.||+|+||.||+|++ ..+++.||+|++.... ....+.+.+|+.+++++ +||||+++++
T Consensus 19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~ 98 (316)
T 2xir_A 19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 98 (316)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence 345555678899999999999999999985 3467889999997643 33456789999999999 6999999999
Q ss_pred eeeeccccccceeeeeecccccCCchhhhhcccc
Q 042887 113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
++.. .....++||||+++|+|.+++.....
T Consensus 99 ~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~ 128 (316)
T 2xir_A 99 ACTK----PGGPLMVIVEFCKFGNLSTYLRSKRN 128 (316)
T ss_dssp EECC----TTSCCEEEEECCTTEEHHHHHHTCTT
T ss_pred EEec----CCCceEEEEEcCCCCcHHHHHHhccc
Confidence 8642 34568999999999999999976553
No 317
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.05 E-value=1.5e-10 Score=116.21 Aligned_cols=95 Identities=25% Similarity=0.462 Sum_probs=77.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCC----cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETG----TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~----~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.++|.+.+.||+|+||.||+|.+..++ ..||+|.+.... ......+.+|+.++++++||||+++++++ ..
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-----~~ 117 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVI-----SK 117 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-----CS
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-----ec
Confidence 356777899999999999999986543 359999997543 33456789999999999999999999985 34
Q ss_pred cceeeeeecccccCCchhhhhcccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
....++||||+++|+|.+++.....
T Consensus 118 ~~~~~lv~e~~~~~~L~~~l~~~~~ 142 (333)
T 1mqb_A 118 YKPMMIITEYMENGALDKFLREKDG 142 (333)
T ss_dssp SSSEEEEEECCTTEEHHHHHHHTTT
T ss_pred CCCcEEEEeCCCCCcHHHHHHhCCC
Confidence 7789999999999999999976543
No 318
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.04 E-value=2.6e-10 Score=116.00 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=81.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|++.... ....+.+.+|+.++++++||||+++++++.....+.....
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 457999999999999999999999999999999997543 3345778999999999999999999998765444455678
Q ss_pred eeeecccccCCchhhhhc
Q 042887 126 ALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~ 143 (628)
|+||||+.+ ++.+++..
T Consensus 106 ~iv~e~~~~-~L~~~l~~ 122 (364)
T 3qyz_A 106 YIVQDLMET-DLYKLLKT 122 (364)
T ss_dssp EEEEECCSE-EHHHHHHH
T ss_pred EEEEcccCc-CHHHHHHh
Confidence 999999985 88888754
No 319
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.04 E-value=3e-10 Score=112.29 Aligned_cols=91 Identities=26% Similarity=0.451 Sum_probs=74.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhh--cCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSN--VRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++ +|+.||+|++... ....+.+|.+++.. ++||||+++++++... ......
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCce
Confidence 46899999999999999999998 7899999998653 23556677777766 7899999999986541 233567
Q ss_pred eeeeecccccCCchhhhhc
Q 042887 125 KALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~ 143 (628)
.++||||+++|+|.+++..
T Consensus 81 ~~lv~e~~~~g~L~~~l~~ 99 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQL 99 (301)
T ss_dssp EEEEECCCTTCBHHHHHTT
T ss_pred eEEehhhccCCCHHHHHhh
Confidence 8999999999999999954
No 320
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.04 E-value=4.6e-11 Score=118.30 Aligned_cols=95 Identities=22% Similarity=0.320 Sum_probs=64.5
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
....++|++.+.||+|+||.||+|.+..+++.||+|.+.... ....+.+.+|+.++++++||||+++++++. ..
T Consensus 11 ~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-----~~ 85 (303)
T 2vwi_A 11 SINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFV-----VK 85 (303)
T ss_dssp --CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEE-----SS
T ss_pred ccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEe-----ec
Confidence 345678999999999999999999998899999999986543 334567889999999999999999999864 36
Q ss_pred ceeeeeecccccCCchhhhhc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~ 143 (628)
...++||||+++|+|.+++..
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~ 106 (303)
T 2vwi_A 86 DELWLVMKLLSGGSVLDIIKH 106 (303)
T ss_dssp SCEEEEEECCTTCBHHHHHHH
T ss_pred CCcEEEehhccCCchHHHHHH
Confidence 788999999999999999864
No 321
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=114.90 Aligned_cols=96 Identities=18% Similarity=0.336 Sum_probs=76.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec---------
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI--------- 117 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~--------- 117 (628)
.++|++.+.||+|+||.||+|.+..+|+.||+|.+........+.+.+|+.++++++||||+++++++...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 46799999999999999999999999999999999876666667899999999999999999999876321
Q ss_pred cccccceeeeeecccccCCchhhhhc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
.+......++||||++ |++.+++..
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~ 114 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQ 114 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTT
T ss_pred cccccCceeEEeeccC-CCHHHHhhc
Confidence 1234578899999998 589888854
No 322
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.04 E-value=3.1e-10 Score=113.78 Aligned_cols=90 Identities=18% Similarity=0.307 Sum_probs=78.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|++..+++.||+|+++... .+.+.+|+.++++++ ||||+++++++.. ......
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~---~~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKD---PVSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEEC---TTTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeecc---CCCCce
Confidence 367999999999999999999999999999999987433 367889999999997 9999999998653 235678
Q ss_pred eeeecccccCCchhhhh
Q 042887 126 ALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~ 142 (628)
++||||++++++.+++.
T Consensus 109 ~lv~e~~~~~~l~~~~~ 125 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQ 125 (330)
T ss_dssp EEEEECCCCCCHHHHGG
T ss_pred EEEEeccCchhHHHHHH
Confidence 99999999999988874
No 323
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.04 E-value=1.2e-10 Score=113.87 Aligned_cols=94 Identities=24% Similarity=0.443 Sum_probs=78.6
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
+....++|++.+.||+|+||.||+|.+. +++.||+|.+..... ..+.+.+|+++++.++||||+++++++. .
T Consensus 8 ~~v~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~ 79 (279)
T 1qpc_A 8 WEVPRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT------Q 79 (279)
T ss_dssp TBCCGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC------S
T ss_pred cccCHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc------C
Confidence 3344578999999999999999999984 567899999875432 3567899999999999999999998853 3
Q ss_pred ceeeeeecccccCCchhhhhcc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
...++||||+++++|.+++...
T Consensus 80 ~~~~~v~e~~~~~~L~~~l~~~ 101 (279)
T 1qpc_A 80 EPIYIITEYMENGSLVDFLKTP 101 (279)
T ss_dssp SSCEEEEECCTTCBHHHHTTSH
T ss_pred CCcEEEEecCCCCCHHHHHhcC
Confidence 4579999999999999998654
No 324
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.04 E-value=2.3e-10 Score=113.00 Aligned_cols=96 Identities=25% Similarity=0.487 Sum_probs=77.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCC---cEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
...|++.+.||+|+||.||+|.+..++ ..||+|.+.... ....+.+.+|+.++++++||||+++++++. ...
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~----~~~ 99 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----RSE 99 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEC----CSS
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEE----cCC
Confidence 356888899999999999999975433 358999987543 344577899999999999999999999863 345
Q ss_pred ceeeeeecccccCCchhhhhcccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
...++||||+++|+|.+++.....
T Consensus 100 ~~~~~v~e~~~~~~L~~~l~~~~~ 123 (298)
T 3f66_A 100 GSPLVVLPYMKHGDLRNFIRNETH 123 (298)
T ss_dssp SCCEEEEECCTTCBHHHHHHCTTC
T ss_pred CceEEEEeCCCCCCHHHHHHhccc
Confidence 678999999999999999976443
No 325
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.04 E-value=1.4e-10 Score=117.31 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=76.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccc---h--------------hhhHHHHHHHHhhcCCCCccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKG---A--------------AKSFVTECEALSNVRHRNLIK 109 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~---~--------------~~~~~~E~~~l~~l~h~nIv~ 109 (628)
.++|++.+.||+|+||.||+|.+ +|+.||+|.+...... . .+.+.+|+.++++++||||++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~ 107 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT 107 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence 46899999999999999999999 8999999999754211 1 178999999999999999999
Q ss_pred ccceeeeccccccceeeeeecccccCCchhhh
Q 042887 110 IITVCSSIDFKGVDFKALIYEYMKCGSSEDWM 141 (628)
Q Consensus 110 l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l 141 (628)
+++++. ..+..++||||+++|+|.+++
T Consensus 108 ~~~~~~-----~~~~~~lv~e~~~~~~L~~~~ 134 (348)
T 2pml_X 108 CEGIIT-----NYDEVYIIYEYMENDSILKFD 134 (348)
T ss_dssp CSEEEE-----SSSEEEEEEECCTTCBSSEES
T ss_pred EEEEEe-----eCCeEEEEEeccCCCcHHHHH
Confidence 999964 467899999999999999883
No 326
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.04 E-value=1.9e-10 Score=115.10 Aligned_cols=96 Identities=23% Similarity=0.427 Sum_probs=77.9
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcE----EEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTT----VAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~----~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.++|++.+.||+|+||.||+|++..+++. ||+|.+.... ......+.+|+.++++++||||+++++++.
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~------ 85 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP------ 85 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC------
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc------
Confidence 35799999999999999999999888876 6677664332 334467889999999999999999999853
Q ss_pred cceeeeeecccccCCchhhhhcccccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
....++||||+++|++.+++......+
T Consensus 86 ~~~~~~v~e~~~~~~L~~~l~~~~~~~ 112 (325)
T 3kex_A 86 GSSLQLVTQYLPLGSLLDHVRQHRGAL 112 (325)
T ss_dssp BSSEEEEEECCTTCBSHHHHHSSGGGS
T ss_pred CCccEEEEEeCCCCCHHHHHHHccccC
Confidence 456889999999999999997654333
No 327
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=117.04 Aligned_cols=102 Identities=25% Similarity=0.401 Sum_probs=83.9
Q ss_pred HHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccc-
Q 042887 42 DLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDF- 119 (628)
Q Consensus 42 ~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~- 119 (628)
+.....+.|++.+.||+|+||.||+|++..+|+.||+|++..... ..+.+.+|+.+++++ +||||+++++++.....
T Consensus 18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~ 96 (326)
T 2x7f_A 18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96 (326)
T ss_dssp CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence 334456889999999999999999999999999999999875432 346789999999999 79999999998754111
Q ss_pred cccceeeeeecccccCCchhhhhcc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
......++||||+++|+|.+++...
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~ 121 (326)
T 2x7f_A 97 GMDDQLWLVMEFCGAGSVTDLIKNT 121 (326)
T ss_dssp CCCCEEEEEEECCTTEEHHHHHHHS
T ss_pred cccceEEEEEEcCCCCcHHHHHHhc
Confidence 1146789999999999999998754
No 328
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.03 E-value=2.4e-10 Score=117.13 Aligned_cols=94 Identities=20% Similarity=0.290 Sum_probs=72.7
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc-----
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF----- 119 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~----- 119 (628)
...++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+|+.+|+.++||||+++++++....-
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 45678999999999999999999999999999999986542 223479999999999999999998754111
Q ss_pred ----------------------------cccceeeeeecccccCCchhhhhc
Q 042887 120 ----------------------------KGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 120 ----------------------------~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
......++||||+++ ++.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~ 130 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKS 130 (383)
T ss_dssp ------------------------------CCEEEEEECCCSE-EHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHH
Confidence 234568899999995 77766653
No 329
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.03 E-value=2.4e-10 Score=117.36 Aligned_cols=95 Identities=21% Similarity=0.362 Sum_probs=72.6
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcC-CCCcccccceeeeccccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~ 121 (628)
...++|++.+.||+|+||.||+|.+..+|+.||+|++... ......++.+|+.+++++. ||||+++++++.. +.
T Consensus 6 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~---~~ 82 (388)
T 3oz6_A 6 HVLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRA---DN 82 (388)
T ss_dssp HHHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC---TT
T ss_pred cccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEec---CC
Confidence 3467899999999999999999999999999999998653 2345567889999999997 9999999998653 33
Q ss_pred cceeeeeecccccCCchhhhhc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
....|+|||||+ |++.+++..
T Consensus 83 ~~~~~lv~e~~~-~~L~~~~~~ 103 (388)
T 3oz6_A 83 DRDVYLVFDYME-TDLHAVIRA 103 (388)
T ss_dssp SSCEEEEEECCS-EEHHHHHHH
T ss_pred CCEEEEEecccC-cCHHHHHHc
Confidence 457899999998 588888864
No 330
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.03 E-value=2.8e-10 Score=115.33 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=81.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|.+..+|+.||||.+.... ......+.+|+.++++++||||+++++++....+......
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999999999999999996543 3345678899999999999999999998765445556789
Q ss_pred eeeecccccCCchhhhhc
Q 042887 126 ALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~ 143 (628)
++||||+. |++.+++..
T Consensus 90 ~lv~e~~~-~~L~~~~~~ 106 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVIST 106 (353)
T ss_dssp EEEECCCS-EEHHHHHHH
T ss_pred EEEEeccC-ccHHHHHhh
Confidence 99999998 588888764
No 331
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.02 E-value=2.7e-10 Score=112.74 Aligned_cols=92 Identities=27% Similarity=0.464 Sum_probs=72.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhh--cCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSN--VRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++ +|+.||+|++... ....+.+|.+++.. ++||||+++++++.... .....
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C--TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEEC-SSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEE--cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCC-Cccce
Confidence 35799999999999999999988 5899999998643 23567788888887 68999999999876411 11137
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.++||||+++|+|.+++...
T Consensus 76 ~~lv~e~~~~g~L~~~l~~~ 95 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNRY 95 (303)
T ss_dssp EEEEEECCTTCCHHHHHHHC
T ss_pred eEEEEeccCCCCHHHHHhcc
Confidence 89999999999999999543
No 332
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.02 E-value=3.1e-10 Score=114.15 Aligned_cols=193 Identities=17% Similarity=0.172 Sum_probs=109.5
Q ss_pred CcccEEEccCCcccc-c-------cchhhhCCCCCCEEecccCcCc---------ccccccccCCCCCCEeecccccCcc
Q 042887 162 LKLEMIDVGDNQLIG-K-------FPDFIANFSALEAIDISANMLG---------GRIPDSLCQLRSLNYLSISENNFSC 224 (628)
Q Consensus 162 ~~L~~L~Ls~n~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~Ls~N~i~~ 224 (628)
.+++.|.+......+ . +.++...+++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 356666666554331 1 1334556789999988765331 123345567888999999887311
Q ss_pred cCCcCccCCCCCCEEEeecccCcccCChhhh-hCCCCCcEEeccc--Cccccc-----ccccc--cCCCCCCEEEccccc
Q 042887 225 KLPLSIWNISSLEIISLHSNRFEGSLPLNIG-FNIPNVNFLSVGQ--NNFTGS-----LPHSF--SNASNLQVLDVYKNH 294 (628)
Q Consensus 225 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~--N~l~~~-----~~~~~--~~l~~L~~L~L~~N~ 294 (628)
..+. + .+++|++|++..|.+.......+. ..+|+|+.|+|+. |...+. +...+ ..+++|++|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2233 3 378889999988877633222333 2478888888753 221111 11122 246778888887777
Q ss_pred ceeecccccc---cCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeecccCCcccccchHHHh
Q 042887 295 FSGQVKIDFN---RLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNTNKFGGVFLRSIAN 359 (628)
Q Consensus 295 i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 359 (628)
++...+..+. .+++|++|+|+.|.+++.... .....+.++++|+.|+++.|.++......+..
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~--~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGAR--LLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH--HHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHH--HHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 7643332232 356777777777776542111 11222344566777777776666554444443
No 333
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.02 E-value=1.2e-10 Score=124.70 Aligned_cols=97 Identities=25% Similarity=0.425 Sum_probs=80.9
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
...+....++|++.+.||+|+||.||+|.+.. +..||||+++.... ..+.|.+|+.+|++++||||+++++++.
T Consensus 259 ~~~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~---- 332 (535)
T 2h8h_A 259 KDAWEIPRESLRLEVKLGQGCFGEVWMGTWNG-TTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS---- 332 (535)
T ss_dssp TTCSBCCGGGEEEEEEEEECSSEEEEEEEETT-TEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred ccceecchhhhhhheecccCCCeEEEEEEECC-CceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEe----
Confidence 34455567789999999999999999999954 56799999976442 3467999999999999999999999853
Q ss_pred cccceeeeeecccccCCchhhhhcc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....|+|||||++|+|.+++...
T Consensus 333 --~~~~~lv~e~~~~gsL~~~l~~~ 355 (535)
T 2h8h_A 333 --EEPIYIVTEYMSKGSLLDFLKGE 355 (535)
T ss_dssp --SSSCEEEECCCTTEEHHHHHSHH
T ss_pred --eccceEeeehhcCCcHHHHHhhc
Confidence 35689999999999999999753
No 334
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.02 E-value=2.7e-10 Score=114.01 Aligned_cols=100 Identities=18% Similarity=0.266 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcC-CCCcccccceee
Q 042887 40 YADLSKATNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVR-HRNLIKIITVCS 115 (628)
Q Consensus 40 ~~~~~~~~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~ 115 (628)
+.......+.|.+. +.||+|+||.||+|.+..+|+.||+|++.... ......+.+|+.+++.+. ||||+++++++
T Consensus 20 ~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~- 98 (327)
T 3lm5_A 20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVY- 98 (327)
T ss_dssp SBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEE-
T ss_pred HHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEE-
Confidence 34444445667776 88999999999999999999999999997643 334567899999999995 69999999995
Q ss_pred eccccccceeeeeecccccCCchhhhhcc
Q 042887 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
......++||||+++|+|.+++...
T Consensus 99 ----~~~~~~~lv~e~~~~~~L~~~~~~~ 123 (327)
T 3lm5_A 99 ----ENTSEIILILEYAAGGEIFSLCLPE 123 (327)
T ss_dssp ----ECSSEEEEEEECCTTEEGGGGGSSC
T ss_pred ----EeCCeEEEEEEecCCCcHHHHHHHh
Confidence 4478899999999999999988543
No 335
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.02 E-value=3.2e-10 Score=111.96 Aligned_cols=92 Identities=28% Similarity=0.545 Sum_probs=76.3
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ....+.+.+|+.++++++||||+++++++.. ...
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 76 (299)
T 2r3i_A 2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHT-----ENK 76 (299)
T ss_dssp CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEE-----TTE
T ss_pred cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEec-----CCc
Confidence 367999999999999999999999999999999986543 2344678899999999999999999999653 678
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.++||||+. |++.+++...
T Consensus 77 ~~lv~e~~~-~~L~~~~~~~ 95 (299)
T 2r3i_A 77 LYLVFEFLH-QDLKKFMDAS 95 (299)
T ss_dssp EEEEEECCS-EEHHHHHHHT
T ss_pred eEEEEEccc-CCHHHHHHhh
Confidence 999999998 5888888654
No 336
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.02 E-value=2.4e-10 Score=114.46 Aligned_cols=96 Identities=25% Similarity=0.477 Sum_probs=73.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEE----EEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTV----AVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~----avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.++|++.+.||+|+||.||+|++..+++.+ |+|.+... .....+.+.+|+.++++++||||+++++++..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 88 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES-----
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----
Confidence 357999999999999999999998777654 77776543 23445779999999999999999999999753
Q ss_pred cceeeeeecccccCCchhhhhcccccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
...++++||+++|++.+++......+
T Consensus 89 -~~~~~v~e~~~~g~L~~~l~~~~~~~ 114 (327)
T 3poz_A 89 -STVQLITQLMPFGCLLDYVREHKDNI 114 (327)
T ss_dssp -SSEEEEEECCTTCBHHHHHHHSTTSC
T ss_pred -CCeEEEEEecCCCcHHHHHHhcCCCC
Confidence 34789999999999999997655433
No 337
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.01 E-value=2.2e-10 Score=111.86 Aligned_cols=92 Identities=28% Similarity=0.486 Sum_probs=76.4
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..++|++.+.||+|+||.||+|.+ +|+.||+|+++... ..+.+.+|+.++++++||||+++++++. +.....
T Consensus 19 ~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~----~~~~~~ 90 (278)
T 1byg_A 19 NMKELKLLQTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIV----EEKGGL 90 (278)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEE--TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEEC----CC--CC
T ss_pred ChhhceEEeEEecCCCceEEEEEE--cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEE----cCCCce
Confidence 356899999999999999999998 58899999987543 4567899999999999999999999853 234578
Q ss_pred eeeecccccCCchhhhhccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~ 145 (628)
++||||+++|+|.+++....
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~ 110 (278)
T 1byg_A 91 YIVTEYMAKGSLVDYLRSRG 110 (278)
T ss_dssp EEEECCCTTEEHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHhcc
Confidence 99999999999999987543
No 338
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.01 E-value=3.1e-10 Score=112.78 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=75.1
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
++|++.+.||+|+||.||+|++..+|+.||||++.... ......+.+|+..+.++ .||||+++++++.+ ...
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-----~~~ 131 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-----GGI 131 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-----CCE
Confidence 57999999999999999999999999999999986532 23344566677666666 89999999999654 788
Q ss_pred eeeeecccccCCchhhhhcccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
.++||||+ ++++.+++.....
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~~ 152 (311)
T 3p1a_A 132 LYLQTELC-GPSLQQHCEAWGA 152 (311)
T ss_dssp EEEEEECC-CCBHHHHHHHHCS
T ss_pred EEEEEecc-CCCHHHHHHhcCC
Confidence 99999999 6688888866543
No 339
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.01 E-value=3.8e-10 Score=111.92 Aligned_cols=99 Identities=24% Similarity=0.431 Sum_probs=77.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-----cchhhhHHHHHHHHhhcC---CCCcccccceeeec
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-----KGAAKSFVTECEALSNVR---HRNLIKIITVCSSI 117 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~ 117 (628)
..++|++.+.||+|+||.||+|++..+|+.||+|++.... ......+.+|+.+++.++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 3578999999999999999999999999999999997532 122356778888877775 99999999997653
Q ss_pred cccccceeeeeecccccCCchhhhhccc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
........++||||+. |++.+++....
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~ 113 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAP 113 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhcc
Confidence 2223346899999998 59998887544
No 340
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.01 E-value=3.2e-10 Score=112.82 Aligned_cols=102 Identities=27% Similarity=0.529 Sum_probs=76.2
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECC---CCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeec
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGE---TGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSI 117 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~---~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~ 117 (628)
.....++|.+.+.||+|+||.||+|.+.. +++.||+|.++... ....+.+.+|+.++++++||||+++++++...
T Consensus 29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~ 108 (313)
T 3brb_A 29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM 108 (313)
T ss_dssp TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence 33445789999999999999999998765 45589999987542 33456789999999999999999999997653
Q ss_pred cccccceeeeeecccccCCchhhhhcc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
........++||||+++|+|.+++...
T Consensus 109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~ 135 (313)
T 3brb_A 109 SSQGIPKPMVILPFMKYGDLHTYLLYS 135 (313)
T ss_dssp ------CEEEEEECCTTCBHHHHHHHT
T ss_pred cccCCcccEEEEecccCCCHHHHHHHh
Confidence 222234569999999999999998543
No 341
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.01 E-value=2.1e-10 Score=116.82 Aligned_cols=94 Identities=26% Similarity=0.505 Sum_probs=76.3
Q ss_pred CCCcCceeecCCceeEEEEEECCCC---cEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 49 NFSASNMIGQGSFGFVYKGKLGETG---TTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 49 ~~~~~~~iG~G~~g~V~~~~~~~~~---~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.|++.+.||+|+||.||+|.+..++ ..||+|.++.. .....+.+.+|+.++++++||||+++++++. +....
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~----~~~~~ 165 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICL----RSEGS 165 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEEC----CCSSC
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEE----cCCCC
Confidence 3667789999999999999975432 45899998654 3345678999999999999999999999863 33567
Q ss_pred eeeeecccccCCchhhhhcccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
.++||||+++|+|.+++.....
T Consensus 166 ~~lv~e~~~~g~L~~~l~~~~~ 187 (373)
T 3c1x_A 166 PLVVLPYMKHGDLRNFIRNETH 187 (373)
T ss_dssp CEEEEECCTTCBHHHHHHCTTC
T ss_pred eEEEEECCCCCCHHHHHhhccc
Confidence 8999999999999999976543
No 342
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.00 E-value=3.1e-10 Score=113.18 Aligned_cols=92 Identities=26% Similarity=0.407 Sum_probs=76.4
Q ss_pred CCcCceeecCCceeEEEEEEC----CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 50 FSASNMIGQGSFGFVYKGKLG----ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 50 ~~~~~~iG~G~~g~V~~~~~~----~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
|++.+.||+|+||.||+|.+. .+++.||+|++.... ....+.+.+|++++++++||||+++++++.+ .....
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---~~~~~ 109 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCED---AGAAS 109 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE---TTTTE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEec---CCCce
Confidence 488999999999999888653 467899999997653 3445678999999999999999999998764 23567
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.++||||+++|+|.+++...
T Consensus 110 ~~lv~e~~~~~~L~~~l~~~ 129 (318)
T 3lxp_A 110 LQLVMEYVPLGSLRDYLPRH 129 (318)
T ss_dssp EEEEECCCTTCBHHHHGGGS
T ss_pred EEEEEecccCCcHHHHHhhC
Confidence 89999999999999998654
No 343
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.00 E-value=3.2e-10 Score=124.51 Aligned_cols=95 Identities=22% Similarity=0.299 Sum_probs=81.7
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~ 121 (628)
..++|++.+.||+|+||.||+|++..+++.||||+++.. .....+.+.+|..++..+ .||+|++++++ +++
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~-----~~~ 413 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSC-----FQT 413 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEE-----CBC
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEE-----EEe
Confidence 457899999999999999999999999999999999754 234556788999999988 69999999998 556
Q ss_pred cceeeeeecccccCCchhhhhccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
....|+||||+++|+|.+++....
T Consensus 414 ~~~~~lV~E~~~gg~L~~~l~~~~ 437 (674)
T 3pfq_A 414 MDRLYFVMEYVNGGDLMYHIQQVG 437 (674)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHS
T ss_pred CCEEEEEEeCcCCCcHHHHHHhcC
Confidence 889999999999999999987543
No 344
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=98.99 E-value=4.3e-10 Score=110.30 Aligned_cols=94 Identities=20% Similarity=0.418 Sum_probs=77.2
Q ss_pred hCCCCcCc-eeecCCceeEEEEEEC--CCCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 47 TNNFSASN-MIGQGSFGFVYKGKLG--ETGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~-~iG~G~~g~V~~~~~~--~~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
.++|.+.+ .||+|+||.||+|.+. .+++.||+|+++... ....+.+.+|++++++++||||+++++++. .
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------~ 81 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------A 81 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE------S
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec------C
Confidence 45677766 8999999999999864 467789999997643 345677999999999999999999999863 4
Q ss_pred ceeeeeecccccCCchhhhhcccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~ 146 (628)
...++||||+++++|.+++.....
T Consensus 82 ~~~~lv~e~~~~~~L~~~l~~~~~ 105 (287)
T 1u59_A 82 EALMLVMEMAGGGPLHKFLVGKRE 105 (287)
T ss_dssp SSEEEEEECCTTEEHHHHHTTCTT
T ss_pred CCcEEEEEeCCCCCHHHHHHhCCc
Confidence 568999999999999999865443
No 345
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.99 E-value=6.2e-10 Score=111.92 Aligned_cols=95 Identities=27% Similarity=0.473 Sum_probs=75.2
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHH--HhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEA--LSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~--l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++.+.||+|+||.||+|++ +++.||+|++..... ..+..|.++ +..++||||+++++.+.........
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 85 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRM 85 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCE
T ss_pred ChHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCc
Confidence 457899999999999999999988 789999999975432 344445444 4457999999999876554455566
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..++|||||++|+|.+++....
T Consensus 86 ~~~lv~e~~~~g~L~~~l~~~~ 107 (336)
T 3g2f_A 86 EYLLVMEYYPNGSLXKYLSLHT 107 (336)
T ss_dssp EEEEEECCCTTCBHHHHHHHCC
T ss_pred eEEEEEecCCCCcHHHHHhhcc
Confidence 7899999999999999996544
No 346
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=98.99 E-value=2.7e-10 Score=111.41 Aligned_cols=94 Identities=22% Similarity=0.415 Sum_probs=77.3
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
..++|.+.+.||+|+||.||+|++... +..||+|.+... .....+.+.+|+.+++.++||||+++++++.
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~------ 83 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIE------ 83 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEEC------
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEc------
Confidence 356799999999999999999997533 346999998764 2344577999999999999999999999853
Q ss_pred cceeeeeecccccCCchhhhhccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
....++||||+++++|.+++....
T Consensus 84 ~~~~~~v~e~~~~~~L~~~l~~~~ 107 (281)
T 3cc6_A 84 EEPTWIIMELYPYGELGHYLERNK 107 (281)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHHT
T ss_pred CCCCEEEEecCCCCCHHHHHHhcc
Confidence 345689999999999999997644
No 347
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=98.99 E-value=4.7e-10 Score=110.69 Aligned_cols=95 Identities=19% Similarity=0.379 Sum_probs=76.6
Q ss_pred CCCcCceeecCCceeEEEEEECCCCc---EEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 49 NFSASNMIGQGSFGFVYKGKLGETGT---TVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 49 ~~~~~~~iG~G~~g~V~~~~~~~~~~---~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.|...+.||+|+||.||+|.+..+++ .||+|.+.... ....+.+.+|+.++++++||||+++++++.+ ....
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLP----PEGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SSSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEec----CCCC
Confidence 45667899999999999999765554 79999987543 3455788999999999999999999998643 2344
Q ss_pred eeeeecccccCCchhhhhccccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~~~ 147 (628)
.+++|||+.+|++.+++......
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~~~~ 120 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSPQRN 120 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCTTCC
T ss_pred cEEEEecccCCCHHHHHhccccC
Confidence 58999999999999999764433
No 348
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=98.99 E-value=4.1e-10 Score=122.42 Aligned_cols=86 Identities=21% Similarity=0.413 Sum_probs=72.3
Q ss_pred eeecCCceeEEEEEECC--CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeeecc
Q 042887 55 MIGQGSFGFVYKGKLGE--TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIYEY 131 (628)
Q Consensus 55 ~iG~G~~g~V~~~~~~~--~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~ 131 (628)
.||+|+||.||+|.+.. ++..||||+++... ....+.+.+|+.+|++++|||||++++++. ....++||||
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~------~~~~~lv~E~ 416 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ------AEALMLVMEM 416 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEE------SSSEEEEEEC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEec------cCCeEEEEEe
Confidence 79999999999998753 45679999997643 345678999999999999999999999864 2458999999
Q ss_pred cccCCchhhhhcccc
Q 042887 132 MKCGSSEDWMHQSND 146 (628)
Q Consensus 132 ~~~g~L~~~l~~~~~ 146 (628)
|++|+|.+++.....
T Consensus 417 ~~~g~L~~~l~~~~~ 431 (613)
T 2ozo_A 417 AGGGPLHKFLVGKRE 431 (613)
T ss_dssp CTTCBHHHHHTTCTT
T ss_pred CCCCcHHHHHhhccC
Confidence 999999999975543
No 349
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.99 E-value=3.3e-10 Score=115.16 Aligned_cols=96 Identities=21% Similarity=0.275 Sum_probs=72.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|.+..+|+.||||++... .....+++.+|+.+++.++||||+++++++... .++...
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 47899999999999999999999999999999999653 233456788999999999999999999987541 223346
Q ss_pred eeeeeecccccCCchhhhhc
Q 042887 124 FKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~ 143 (628)
..|+|+|++ +++|.+++..
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~ 126 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC 126 (367)
T ss_dssp CCEEEEECC-CEECC-----
T ss_pred eEEEEeccc-CCCHHHHHhc
Confidence 789999999 6788888754
No 350
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=98.99 E-value=2.1e-10 Score=112.85 Aligned_cols=93 Identities=20% Similarity=0.426 Sum_probs=76.2
Q ss_pred HhCCCCcCc-eeecCCceeEEEEEE--CCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 46 ATNNFSASN-MIGQGSFGFVYKGKL--GETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 46 ~~~~~~~~~-~iG~G~~g~V~~~~~--~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
..++|.+.+ .||+|+||.||+|.+ ..+++.||+|++.... ....+.+.+|+.+++.++||||+++++++.
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~----- 88 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE----- 88 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEE-----
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEC-----
Confidence 346788887 999999999999954 5567899999997543 233567999999999999999999999862
Q ss_pred ccceeeeeecccccCCchhhhhcc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
....++||||+++++|.+++...
T Consensus 89 -~~~~~lv~e~~~~~~L~~~l~~~ 111 (291)
T 1xbb_A 89 -AESWMLVMEMAELGPLNKYLQQN 111 (291)
T ss_dssp -SSSEEEEEECCTTEEHHHHHHHC
T ss_pred -CCCcEEEEEeCCCCCHHHHHHhC
Confidence 46689999999999999998754
No 351
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=98.98 E-value=2.4e-10 Score=115.75 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=78.6
Q ss_pred hCCCCcCceeecCCceeEEEEEEC---CCCcEEEEEEeeccc----cchhhhHHHHHHHHhhc-CCCCcccccceeeecc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLG---ETGTTVAVKVMNLKQ----KGAAKSFVTECEALSNV-RHRNLIKIITVCSSID 118 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~---~~~~~~avK~~~~~~----~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~ 118 (628)
.++|++.+.||+|+||.||+|++. .+|+.||||+++... ....+.+.+|+.+++++ .||||+++++++.
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~--- 129 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQ--- 129 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEE---
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEe---
Confidence 368999999999999999999984 478999999986532 23446678899999999 6999999999854
Q ss_pred ccccceeeeeecccccCCchhhhhcc
Q 042887 119 FKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.....++||||+++|+|.+++...
T Consensus 130 --~~~~~~lv~e~~~~~~L~~~l~~~ 153 (355)
T 1vzo_A 130 --TETKLHLILDYINGGELFTHLSQR 153 (355)
T ss_dssp --ETTEEEEEECCCCSCBHHHHHHHH
T ss_pred --eCceEEEEeecCCCCCHHHHHHHc
Confidence 467899999999999999998654
No 352
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.98 E-value=5.3e-10 Score=112.40 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=80.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecc---cccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSID---FKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~---~~~~ 122 (628)
..+|++.+.||+|+||.||+|++..+++.||+|++........+.+.+|+.+++++. ||||+++++++.... ....
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 357999999999999999999999999999999987665556678899999999996 999999999875311 1345
Q ss_pred ceeeeeecccccCCchhhhhc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~ 143 (628)
...+++|||+. |++.+++..
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~ 126 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKK 126 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHH
T ss_pred ceEEEEEEecC-CCHHHHHHH
Confidence 67899999997 688888864
No 353
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=98.98 E-value=4e-10 Score=114.76 Aligned_cols=91 Identities=13% Similarity=0.206 Sum_probs=74.6
Q ss_pred HHhCCCCcCceeecCCceeEEEEE-----ECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC---CCCcccccceeee
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGK-----LGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR---HRNLIKIITVCSS 116 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~-----~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~ 116 (628)
...++|.+.+.||+|+||.||+|. ...+++.||+|++.... ...+.+|+.+++.++ |+||+++++++.
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~- 137 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHL- 137 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEE-
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeee-
Confidence 345779999999999999999994 56788999999987543 356778888888886 999999999864
Q ss_pred ccccccceeeeeecccccCCchhhhhc
Q 042887 117 IDFKGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 117 ~~~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
..+..|+|||||++|+|.+++..
T Consensus 138 ----~~~~~~lv~e~~~~g~L~~~l~~ 160 (365)
T 3e7e_A 138 ----FQNGSVLVGELYSYGTLLNAINL 160 (365)
T ss_dssp ----CSSCEEEEECCCCSCBHHHHHHH
T ss_pred ----cCCCcEEEEeccCCCcHHHHHHH
Confidence 36788999999999999999975
No 354
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=98.97 E-value=4.5e-10 Score=115.64 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=74.5
Q ss_pred hCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccce
Q 042887 47 TNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|.+. +.||+|+||.||+|.+..+|+.||||++... ..+.+|+.++.+. +||||+++++++... +.+...
T Consensus 60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~ 133 (400)
T 1nxk_A 60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 133 (400)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcE
Confidence 3566665 6899999999999999999999999998632 4567888887544 799999999986431 233567
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.|+|||||++|+|.+++....
T Consensus 134 ~~lv~E~~~gg~L~~~l~~~~ 154 (400)
T 1nxk_A 134 LLIVMECLDGGELFSRIQDRG 154 (400)
T ss_dssp EEEEEECCCSEEHHHHHHCC-
T ss_pred EEEEEEeCCCCcHHHHHHHhC
Confidence 899999999999999997643
No 355
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.97 E-value=7.4e-10 Score=112.96 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=78.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~ 123 (628)
.++|++.+.||+|+||.||+|.+..+++.||+|++... .....+.+.+|+.+++.++||||+++++++... .++...
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 46899999999999999999999999999999999753 233456788999999999999999999987541 123345
Q ss_pred eeeeeecccccCCchhhhh
Q 042887 124 FKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~ 142 (628)
..|+||||+++ ++.+++.
T Consensus 104 ~~~lv~e~~~~-~l~~~~~ 121 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQ 121 (371)
T ss_dssp EEEEEEECCSE-EHHHHHH
T ss_pred ceEEEEEcCCC-CHHHHHh
Confidence 78999999985 6777664
No 356
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.97 E-value=6.5e-10 Score=111.21 Aligned_cols=96 Identities=25% Similarity=0.477 Sum_probs=78.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEE----EEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeeeccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTV----AVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~----avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~ 121 (628)
.++|++.+.||+|+||.||+|++..+++.+ |+|.+... .....+.+.+|+.+++.++||||+++++++..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----- 88 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES-----
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec-----
Confidence 467999999999999999999998888765 55555432 23455779999999999999999999998653
Q ss_pred cceeeeeecccccCCchhhhhcccccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
...++++||+++|++.+++......+
T Consensus 89 -~~~~~v~~~~~~g~L~~~l~~~~~~~ 114 (327)
T 3lzb_A 89 -STVQLITQLMPFGCLLDYVREHKDNI 114 (327)
T ss_dssp -SSEEEEECCCSSCBHHHHHHHTTTCC
T ss_pred -CCceEEEEecCCCcHHHHHHhcCCCC
Confidence 34789999999999999997654433
No 357
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.97 E-value=6.5e-10 Score=110.13 Aligned_cols=95 Identities=28% Similarity=0.425 Sum_probs=77.3
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
...++|.+.+.||+|+||.||+|.+. ..+|+|+++... ....+.+.+|+.++++++||||+++++++. .
T Consensus 33 i~~~~~~~~~~lG~G~~g~Vy~~~~~---~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~------~ 103 (307)
T 3lb7_A 33 IEASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT------K 103 (307)
T ss_dssp CCTTSCCEEEEEEECSSCEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC------S
T ss_pred ecccceEEEeEecCCCCeEEEEEEEC---CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc------c
Confidence 34578999999999999999999874 358999887542 334577999999999999999999999743 4
Q ss_pred ceeeeeecccccCCchhhhhcccccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
...++||||+++|+|.+++......+
T Consensus 104 ~~~~lv~e~~~~~~L~~~l~~~~~~~ 129 (307)
T 3lb7_A 104 DNLAIVTQWCEGSSLYKHLHVQETKF 129 (307)
T ss_dssp SSCEEEEECCSSCBHHHHHHTSCCCC
T ss_pred CcEEEEEecCCCCcHHHHHHhcccCC
Confidence 56799999999999999987554433
No 358
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.97 E-value=1.5e-10 Score=124.60 Aligned_cols=99 Identities=20% Similarity=0.357 Sum_probs=80.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc-ccchhhhHHHHHHHHhhcCCCCcccccceeee-ccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-QKGAAKSFVTECEALSNVRHRNLIKIITVCSS-IDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~-~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|.+..+|+.||+|++... .....+.+.+|++++++++||||+++++++.. ..+.....
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 47899999999999999999999999999999998654 33445779999999999999999999988643 11233677
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.++|||||++|+|.+++....
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~ 113 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFE 113 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSS
T ss_pred EEEEEEeCCCCCHHHHHHhcc
Confidence 899999999999999997644
No 359
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.97 E-value=5.4e-10 Score=113.09 Aligned_cols=98 Identities=21% Similarity=0.419 Sum_probs=77.6
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc---ccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID---FKG 121 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~---~~~ 121 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ......+.+|+.+++.++||||+++++++.... ...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 467999999999999999999999999999999986543 233457889999999999999999999876521 111
Q ss_pred cceeeeeecccccCCchhhhhccc
Q 042887 122 VDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
....++||||+++ ++.+.+....
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~ 118 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVL 118 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTT
T ss_pred CceEEEEEeccCC-CHHHHHhhcc
Confidence 4578999999986 6766665543
No 360
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=98.96 E-value=9.2e-10 Score=110.92 Aligned_cols=102 Identities=25% Similarity=0.393 Sum_probs=80.6
Q ss_pred cccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhh--cCCCCccccccee
Q 042887 37 MVSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSN--VRHRNLIKIITVC 114 (628)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~l~~~~ 114 (628)
..+........++|++.+.||+|+||.||+|++ +|+.||+|++... ....+.+|++++.. ++||||+++++++
T Consensus 31 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~ 105 (342)
T 1b6c_B 31 GLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAAD 105 (342)
T ss_dssp SSCHHHHHHHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEE
T ss_pred CCceeecccccccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeee
Confidence 344444455667899999999999999999999 6899999998643 23567889998887 6899999999986
Q ss_pred eeccccccceeeeeecccccCCchhhhhcc
Q 042887 115 SSIDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 115 ~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.... ......++||||+++|+|.+++.+.
T Consensus 106 ~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~ 134 (342)
T 1b6c_B 106 NKDN-GTWTQLWLVSDYHEHGSLFDYLNRY 134 (342)
T ss_dssp ECCC-SSCCCEEEEECCCTTCBHHHHHHHC
T ss_pred cccC-CccceeEEEEeecCCCcHHHHHhcc
Confidence 5411 1113789999999999999999653
No 361
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=2.7e-10 Score=114.58 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=48.6
Q ss_pred ccCCCCEeeCcCCcCcccCCcccc---CCCCCCeEECcCceeeee----cCccccCCCCCCEEECCCCcccccCchhhhc
Q 042887 484 NLRNLAEFDLSENHFSNEIPVTLS---ACTTLEYLHLQGNSFSGS----LPLSLKTLKSIKELDLSRNNLSGQIPKYLEN 556 (628)
Q Consensus 484 ~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 556 (628)
.+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.|+...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356777777777776543322222 356777777777776653 2333345677777777777766443334443
Q ss_pred ccCCCeEeccCCc
Q 042887 557 LLFLAYLNLSYNH 569 (628)
Q Consensus 557 l~~L~~L~ls~N~ 569 (628)
.- ...++++.|+
T Consensus 330 al-g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL-PMKIDVSDSQ 341 (362)
T ss_dssp HC-CSEEECCSBC
T ss_pred Hc-CCEEEecCCc
Confidence 11 3456776665
No 362
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.96 E-value=4.1e-10 Score=124.36 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=76.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECC-CCcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGE-TGTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~-~~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|.+.. +|+.||||++.... ....+.+.+|+.++++++||||+++++++...+......
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 4789999999999999999999975 68999999986542 334567899999999999999999999876532222233
Q ss_pred eeeeecccccCCchhhhhc
Q 042887 125 KALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~ 143 (628)
.|+||||+++++|.+++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~ 177 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ 177 (681)
T ss_dssp EEEEEECCCCEECC----C
T ss_pred eEEEEEeCCCCcHHHHHhC
Confidence 7999999999999887654
No 363
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=98.95 E-value=1.9e-10 Score=117.64 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=72.7
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecc---ccchhhhHHHHHH---HHhhcCCCCcccccceeee--cc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK---QKGAAKSFVTECE---ALSNVRHRNLIKIITVCSS--ID 118 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~---~~~~~~~~~~E~~---~l~~l~h~nIv~l~~~~~~--~~ 118 (628)
.++|++.+.||+|+||.||+|++..+|+.||||++... .....+.+.+|+. .+++++|||||++++.+.. ..
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 35688899999999999999999889999999999743 2345577899994 5556679999999854321 00
Q ss_pred ccccc-----------------eeeeeecccccCCchhhhhcc
Q 042887 119 FKGVD-----------------FKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 119 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~ 144 (628)
++..+ ..|+||||+ +|+|.+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~ 193 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL 193 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc
Confidence 11111 378999999 57999999754
No 364
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.95 E-value=8.2e-10 Score=109.02 Aligned_cols=93 Identities=15% Similarity=0.255 Sum_probs=76.1
Q ss_pred hCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHH-hhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEAL-SNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l-~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|.+. +.||+|+||.||+|.+..+++.||+|++.. ...+.+|+.++ +..+||||+++++++... ......
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 89 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKC 89 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCce
Confidence 4567776 789999999999999999999999999864 24567888887 555899999999986531 223577
Q ss_pred eeeeecccccCCchhhhhccc
Q 042887 125 KALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.++||||+++|+|.+++....
T Consensus 90 ~~lv~e~~~~~~L~~~l~~~~ 110 (299)
T 3m2w_A 90 LLIVMECLDGGELFSRIQDRG 110 (299)
T ss_dssp EEEEECCCCSCBHHHHHHHCT
T ss_pred EEEEEeecCCCcHHHHHHhcc
Confidence 899999999999999997643
No 365
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=98.94 E-value=1.1e-09 Score=110.04 Aligned_cols=99 Identities=27% Similarity=0.367 Sum_probs=76.2
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc--CCCCcccccceeeec
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV--RHRNLIKIITVCSSI 117 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l--~h~nIv~l~~~~~~~ 117 (628)
........++|++.+.||+|+||.||+|++ +|+.||+|++.... ...+.+|.+++... +||||+++++++...
T Consensus 29 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~ 103 (337)
T 3mdy_A 29 LLVQRTIAKQIQMVKQIGKGRYGEVWMGKW--RGEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKG 103 (337)
T ss_dssp HHHHTTHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEES
T ss_pred cccccccccceEEEeEeecCCCeEEEEEEE--CCceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccC
Confidence 333444567899999999999999999998 48999999986432 24455666666555 899999999987641
Q ss_pred cccccceeeeeecccccCCchhhhhcc
Q 042887 118 DFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 118 ~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.......++||||+++|+|.+++...
T Consensus 104 -~~~~~~~~lv~e~~~~g~L~~~l~~~ 129 (337)
T 3mdy_A 104 -TGSWTQLYLITDYHENGSLYDYLKST 129 (337)
T ss_dssp -CGGGCEEEEEECCCTTCBHHHHHHHC
T ss_pred -CCCCCceEEEEeccCCCcHHHHhhcc
Confidence 11226789999999999999999643
No 366
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.94 E-value=6e-10 Score=109.41 Aligned_cols=95 Identities=28% Similarity=0.437 Sum_probs=76.4
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
...++|++.+.||+|+||.||+|++. ..||+|+++... ....+.+.+|+.++++++||||+++++++ ..
T Consensus 21 i~~~~y~~~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~------~~ 91 (289)
T 3og7_A 21 IPDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS------TA 91 (289)
T ss_dssp CCTTSCEEEEEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE------CS
T ss_pred cCccceeeeeEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec------cC
Confidence 34578999999999999999999873 359999997543 34457799999999999999999998864 24
Q ss_pred ceeeeeecccccCCchhhhhcccccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
...++||||++++++.+++.......
T Consensus 92 ~~~~lv~e~~~~~~L~~~l~~~~~~~ 117 (289)
T 3og7_A 92 PQLAIVTQWCEGSSLYHHLHASETKF 117 (289)
T ss_dssp SSCEEEEECCCEEEHHHHHTTC---C
T ss_pred CccEEEEEecCCCcHHHHHhhccCCC
Confidence 56899999999999999986554433
No 367
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.94 E-value=1.3e-09 Score=107.57 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=79.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeecccccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ..+.+.+|+.+++.+ .|++++++++++. .....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~-----~~~~~ 81 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQ-----EGLHN 81 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEE-----ETTEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecC-----CCcee
Confidence 467999999999999999999999999999999986533 345688999999999 6999999998854 47788
Q ss_pred eeeecccccCCchhhhhcccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~~ 146 (628)
++||||+ +++|.+++.....
T Consensus 82 ~lv~e~~-~~~L~~~l~~~~~ 101 (298)
T 1csn_A 82 VLVIDLL-GPSLEDLLDLCGR 101 (298)
T ss_dssp EEEEECC-CCBHHHHHHHTTT
T ss_pred EEEEEec-CCCHHHHHHHhcc
Confidence 9999999 9999999976543
No 368
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=98.94 E-value=9.4e-10 Score=110.78 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=75.3
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHHH-HhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECEA-LSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~~-l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++.+.||+|+||.||+|++..+|+.||||++.... ......+..|+.+ ++.++||||+++++++. ..+
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~-----~~~ 123 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REG 123 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEE-----CSS
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEE-----eCC
Confidence 4577889999999999999999999999999999997642 2334556666665 77789999999999964 367
Q ss_pred eeeeeecccccCCchhhhhc
Q 042887 124 FKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~ 143 (628)
..|+||||+++ ++.+++..
T Consensus 124 ~~~lv~e~~~~-~L~~~l~~ 142 (340)
T 3an0_A 124 DVWICMELMDT-SLDKFYKQ 142 (340)
T ss_dssp CEEEEECCCSE-EHHHHHHH
T ss_pred cEEEEHHHhhC-cHHHHHHH
Confidence 89999999986 88888764
No 369
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.93 E-value=3.9e-10 Score=112.07 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=72.8
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhc----CCCCcccccc
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNV----RHRNLIKIIT 112 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l----~h~nIv~l~~ 112 (628)
.....++|++.+.||+|+||.||+|++..+++.||+|++..... .....+.+|+.++.++ +||||+++++
T Consensus 26 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~ 105 (312)
T 2iwi_A 26 REAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLD 105 (312)
T ss_dssp -------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEE
T ss_pred hhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEE
Confidence 34446789999999999999999999999999999999965432 2335577899999998 8999999999
Q ss_pred eeeeccccccceeeeeecc-cccCCchhhhhcc
Q 042887 113 VCSSIDFKGVDFKALIYEY-MKCGSSEDWMHQS 144 (628)
Q Consensus 113 ~~~~~~~~~~~~~~lv~e~-~~~g~L~~~l~~~ 144 (628)
++ ......++|||+ +.+++|.+++...
T Consensus 106 ~~-----~~~~~~~~v~e~~~~~~~L~~~l~~~ 133 (312)
T 2iwi_A 106 WF-----ETQEGFMLVLERPLPAQDLFDYITEK 133 (312)
T ss_dssp EC----------CEEEEECCSSEEEHHHHHHHH
T ss_pred EE-----ecCCeEEEEEEecCCCCCHHHHHHhc
Confidence 84 446788999999 7899999998753
No 370
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.93 E-value=2.1e-10 Score=114.37 Aligned_cols=100 Identities=22% Similarity=0.417 Sum_probs=82.3
Q ss_pred ccHHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceee
Q 042887 38 VSYADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCS 115 (628)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~ 115 (628)
....++....++|++.+.||+|+||.||+|.+.. .+|+|++.... ....+.+.+|+.++++++||||+++++++.
T Consensus 23 ~~~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 99 (319)
T 2y4i_B 23 IFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACM 99 (319)
T ss_dssp CCGGGSSSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEE
T ss_pred cccccccCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEe
Confidence 3345555667899999999999999999999843 49999987542 334467889999999999999999999965
Q ss_pred eccccccceeeeeecccccCCchhhhhccc
Q 042887 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
+ ....++||||+++++|.+++....
T Consensus 100 ~-----~~~~~iv~e~~~~~~L~~~l~~~~ 124 (319)
T 2y4i_B 100 S-----PPHLAIITSLCKGRTLYSVVRDAK 124 (319)
T ss_dssp C-----SSCEEEECBCCCSEEHHHHTTSSC
T ss_pred c-----CCceEEEeecccCCcHHHHHHhcC
Confidence 3 677999999999999999997654
No 371
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.92 E-value=1.4e-09 Score=110.25 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=76.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-ccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~ 123 (628)
.++|.+.+.||+|+||.||+|.+..+|+.||||++.... ....+.+.+|+.+++.++||||+++++++.... .....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 367999999999999999999999999999999996542 334567899999999999999999999865411 11123
Q ss_pred eeeeeecccccCCchhhhh
Q 042887 124 FKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~ 142 (628)
..|+||||+. |++.+++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~ 120 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG 120 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT
T ss_pred eEEEEecccc-CCHHHHhc
Confidence 4699999998 57877764
No 372
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.92 E-value=1.1e-09 Score=111.54 Aligned_cols=95 Identities=20% Similarity=0.296 Sum_probs=76.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeecc-ccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVD 123 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~ 123 (628)
.++|.+.+.||+|+||.||+|.+..+|+.||+|++.... ....+.+.+|+.+++.++||||+++++++.... .....
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468999999999999999999999999999999997542 334577899999999999999999999975411 11122
Q ss_pred eeeeeecccccCCchhhhh
Q 042887 124 FKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~ 142 (628)
..++||||+. |++.+++.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~ 138 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG 138 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT
T ss_pred eEEEEEcccc-ccHHHHhh
Confidence 3499999998 57777664
No 373
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=98.92 E-value=1.3e-09 Score=118.83 Aligned_cols=85 Identities=22% Similarity=0.461 Sum_probs=70.9
Q ss_pred ceeecCCceeEEEEEE--CCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceeeeee
Q 042887 54 NMIGQGSFGFVYKGKL--GETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKALIY 129 (628)
Q Consensus 54 ~~iG~G~~g~V~~~~~--~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~ 129 (628)
+.||+|+||.||+|.+ ..+++.||||+++... ....+.+.+|+.+|++++|||||++++++. ....++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~------~~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE------AESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE------SSSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe------cCCEEEEE
Confidence 3699999999999965 3566889999997643 334578999999999999999999999864 34578999
Q ss_pred cccccCCchhhhhcc
Q 042887 130 EYMKCGSSEDWMHQS 144 (628)
Q Consensus 130 e~~~~g~L~~~l~~~ 144 (628)
|||++|+|.+++...
T Consensus 449 E~~~~g~L~~~l~~~ 463 (635)
T 4fl3_A 449 EMAELGPLNKYLQQN 463 (635)
T ss_dssp ECCTTEEHHHHHHHC
T ss_pred EccCCCCHHHHHhhC
Confidence 999999999999643
No 374
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=98.91 E-value=9.9e-10 Score=107.85 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=71.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-c-chhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-K-GAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~-~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... . ...+.+.++...++.+.||||+++++++. ....
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~-----~~~~ 80 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALF-----REGD 80 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEE-----CSSS
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeee-----ccCC
Confidence 468999999999999999999999999999999997542 2 22233444455578889999999999964 4678
Q ss_pred eeeeecccccCCchhhhhc
Q 042887 125 KALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~ 143 (628)
.++||||+++ ++.+++..
T Consensus 81 ~~lv~e~~~~-~l~~~l~~ 98 (290)
T 3fme_A 81 VWICMELMDT-SLDKFYKQ 98 (290)
T ss_dssp EEEEEECCSE-EHHHHHHH
T ss_pred EEEEEehhcc-chHHHHHH
Confidence 8999999985 77777654
No 375
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.90 E-value=1.8e-09 Score=108.04 Aligned_cols=99 Identities=21% Similarity=0.413 Sum_probs=78.8
Q ss_pred HhCCCCcCceeecCCceeEEEEEEC-CCCcEEEEEEeeccc--cchhhhHHHHHHHHhhc---CCCCcccccceeeeccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLG-ETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNV---RHRNLIKIITVCSSIDF 119 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~-~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~ 119 (628)
..++|++.+.||+|+||.||+|++. .+|+.||+|++.... ......+.+|+.+++.+ .||||+++++++.....
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 3468999999999999999999995 678899999997543 22345678888888777 89999999998763223
Q ss_pred cccceeeeeecccccCCchhhhhccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
......++||||+. |++.+++....
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~ 113 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVP 113 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcc
Confidence 35678999999998 59998886543
No 376
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.90 E-value=9.3e-10 Score=120.39 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=78.6
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCC---CcEEEEEEeeccc-cchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGET---GTTVAVKVMNLKQ-KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~---~~~~avK~~~~~~-~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
....++|++.+.||+|+||.||+|.+..+ +..||+|...... ....+.+.+|+.++++++||||+++++++.
T Consensus 386 ~i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~---- 461 (656)
T 2j0j_A 386 EIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT---- 461 (656)
T ss_dssp BCCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC----
T ss_pred ccccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe----
Confidence 33456788889999999999999998654 4569999986543 344577999999999999999999999853
Q ss_pred cccceeeeeecccccCCchhhhhccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.+..|+||||+++|+|.+++....
T Consensus 462 --~~~~~lv~E~~~~g~L~~~l~~~~ 485 (656)
T 2j0j_A 462 --ENPVWIIMELCTLGELRSFLQVRK 485 (656)
T ss_dssp --SSSCEEEEECCTTCBHHHHHHHTT
T ss_pred --cCceEEEEEcCCCCcHHHHHHhcc
Confidence 356899999999999999997544
No 377
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=98.90 E-value=1.3e-09 Score=111.82 Aligned_cols=91 Identities=16% Similarity=0.266 Sum_probs=76.1
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcC--CCCcccccceeeeccccccc
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVR--HRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~~~~~ 123 (628)
..|++.+.||+|+||.||+|.+.. ++.||||++.... ....+.+.+|+.+|++++ ||||+++++++. ...
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~-----~~~ 129 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TDQ 129 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSS
T ss_pred CceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEe-----cCC
Confidence 459999999999999999999864 8999999997543 344577999999999997 599999999864 367
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..|+||| +.+++|.+++....
T Consensus 130 ~~~lv~E-~~~~~L~~~l~~~~ 150 (390)
T 2zmd_A 130 YIYMVME-CGNIDLNSWLKKKK 150 (390)
T ss_dssp EEEEEEE-CCSEEHHHHHHHCS
T ss_pred EEEEEEe-cCCCCHHHHHHhcC
Confidence 7999999 67789999987543
No 378
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=98.90 E-value=1.2e-09 Score=110.09 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=76.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcCC--CCcccccceeeecccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVRH--RNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~h--~nIv~l~~~~~~~~~~~~ 122 (628)
.+.|++.+.||+|+||.||+|.+ .+++.||+|++.... ....+.+.+|+.++++++| |||+++++++. ..
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~-----~~ 81 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-----TD 81 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CS
T ss_pred cCEEEEEEEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe-----eC
Confidence 35699999999999999999998 468999999997543 3345678999999999986 99999999854 47
Q ss_pred ceeeeeecccccCCchhhhhcc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
...|+||| +.+|+|.+++...
T Consensus 82 ~~~~lv~e-~~~~~L~~~l~~~ 102 (343)
T 3dbq_A 82 QYIYMVME-CGNIDLNSWLKKK 102 (343)
T ss_dssp SEEEEEEC-CCSEEHHHHHHHS
T ss_pred CEEEEEEe-CCCCCHHHHHHhc
Confidence 78999999 5678999998754
No 379
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=98.89 E-value=2.2e-09 Score=107.36 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=73.4
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc-cchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ-KGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~-~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++.+.||+|+||.||+|.+..+|+.||+|++.... ......+.+|+. +++.++||||+++++++. ..+
T Consensus 20 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~-----~~~ 94 (327)
T 3aln_A 20 TAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALF-----REG 94 (327)
T ss_dssp CSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEE-----CSS
T ss_pred CHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEE-----eCC
Confidence 3578999999999999999999999899999999997643 233455666766 677789999999999964 367
Q ss_pred eeeeeecccccCCchhhhh
Q 042887 124 FKALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~ 142 (628)
..++||||+++ ++.+++.
T Consensus 95 ~~~lv~e~~~~-~l~~~~~ 112 (327)
T 3aln_A 95 DCWICMELMST-SFDKFYK 112 (327)
T ss_dssp EEEEEECCCSE-EHHHHHH
T ss_pred ceEEEEeecCC-ChHHHHH
Confidence 88999999996 7776665
No 380
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.87 E-value=2.9e-09 Score=108.12 Aligned_cols=100 Identities=21% Similarity=0.279 Sum_probs=67.5
Q ss_pred HHHHHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccc
Q 042887 40 YADLSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDF 119 (628)
Q Consensus 40 ~~~~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~ 119 (628)
........++|++.+.||+|+||.||+|++..+|+.||||++.... .....+.+|+..++.++||||+++++++.....
T Consensus 15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~ 93 (360)
T 3e3p_A 15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE 93 (360)
T ss_dssp SHHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred hhhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence 3445667789999999999999999999999999999999986543 234567788888899999999999998765211
Q ss_pred --cccceeeeeecccccCCchhhh
Q 042887 120 --KGVDFKALIYEYMKCGSSEDWM 141 (628)
Q Consensus 120 --~~~~~~~lv~e~~~~g~L~~~l 141 (628)
......++||||++++ +.+.+
T Consensus 94 ~~~~~~~~~lv~e~~~~~-l~~~~ 116 (360)
T 3e3p_A 94 RDRRDIYLNVVMEYVPDT-LHRCC 116 (360)
T ss_dssp SCTTCEEEEEEEECCSCB-HHHHH
T ss_pred ccccceeEEEEeeccccc-HHHHH
Confidence 1233478999999974 44333
No 381
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.87 E-value=1e-09 Score=107.87 Aligned_cols=93 Identities=29% Similarity=0.484 Sum_probs=69.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECC-CCc--EEEEEEeecc---ccchhhhHHHHHHHHhhcCCCCcccccceeeecccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGE-TGT--TVAVKVMNLK---QKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~-~~~--~~avK~~~~~---~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~ 120 (628)
.++|++.+.||+|+||.||+|++.. +++ .||+|+++.. .....+.+.+|+.++++++||||+++++++..
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 92 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT---- 92 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence 4579999999999999999998643 333 5899998654 23445778999999999999999999998642
Q ss_pred ccceeeeeecccccCCchhhhhccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
...++||||+++|++.+++....
T Consensus 93 --~~~~~v~e~~~~~~L~~~l~~~~ 115 (291)
T 1u46_A 93 --PPMKMVTELAPLGSLLDRLRKHQ 115 (291)
T ss_dssp --SSCEEEEECCTTCBHHHHHHHHG
T ss_pred --CCceeeEecccCCCHHHHHHhcc
Confidence 34789999999999999987654
No 382
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.86 E-value=2.3e-09 Score=111.13 Aligned_cols=90 Identities=23% Similarity=0.392 Sum_probs=71.1
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeec-cccccceee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSI-DFKGVDFKA 126 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~-~~~~~~~~~ 126 (628)
..|++.+.||+|+||.||+|++..+|+.||||++.... ....+|+++|++++|||||++++++... ...+....+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 36899999999999999999999999999999986532 2334799999999999999999987542 112334577
Q ss_pred eeecccccCCchhhhh
Q 042887 127 LIYEYMKCGSSEDWMH 142 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~ 142 (628)
+||||+++ ++.+.+.
T Consensus 130 lv~e~~~~-~l~~~~~ 144 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVAR 144 (420)
T ss_dssp EEEECCCE-EHHHHHH
T ss_pred eehhcccc-cHHHHHH
Confidence 99999986 5555543
No 383
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.86 E-value=3.1e-09 Score=104.64 Aligned_cols=93 Identities=25% Similarity=0.349 Sum_probs=77.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++.... ..+.+.+|+.+++.++|++++..+..+. ......+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEE----EETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCcccccc----CCCCceE
Confidence 468999999999999999999999999999999986543 2356889999999999988877766553 2467889
Q ss_pred eeecccccCCchhhhhcccc
Q 042887 127 LIYEYMKCGSSEDWMHQSND 146 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~ 146 (628)
+||||+ +++|.+++.....
T Consensus 82 lv~e~~-~~~L~~~~~~~~~ 100 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFCSR 100 (296)
T ss_dssp EEEECC-CCBHHHHHHHTTT
T ss_pred EEEEec-CCCHHHHHHhhcc
Confidence 999999 8999999875443
No 384
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.85 E-value=3.1e-09 Score=104.64 Aligned_cols=95 Identities=25% Similarity=0.353 Sum_probs=75.0
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecccccccee
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
..++|++.+.||+|+||.||+|++..+++.||+|++.... ....+.+|+.+++.++|++++..+..+. ......
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~----~~~~~~ 80 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCG----AEGDYN 80 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEE----EETTEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeec----CCCCce
Confidence 3578999999999999999999999999999999876543 2356889999999999988888777653 346788
Q ss_pred eeeecccccCCchhhhhccccc
Q 042887 126 ALIYEYMKCGSSEDWMHQSNDK 147 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~~~~~~ 147 (628)
++||||+ +|+|.+++......
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~~~ 101 (296)
T 4hgt_A 81 VMVMELL-GPSLEDLFNFCSRK 101 (296)
T ss_dssp EEEEECC-CCBHHHHHHHTTSC
T ss_pred EEEEEcc-CCCHHHHHHHhcCC
Confidence 9999999 89999998754433
No 385
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.84 E-value=2.2e-09 Score=109.22 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=75.0
Q ss_pred hCCCCcCceeecCCceeEEEEEECCC-----CcEEEEEEeeccccc-----------hhhhHHHHHHHHhhcCCCCcccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGET-----GTTVAVKVMNLKQKG-----------AAKSFVTECEALSNVRHRNLIKI 110 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~-----~~~~avK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~nIv~l 110 (628)
.++|++.+.||+|+||.||+|.+..+ ++.||+|++...... ....+.+|+..+..++||||+++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 45899999999999999999998764 578999998754311 11234556667788899999999
Q ss_pred cceeeeccccccceeeeeecccccCCchhhhhcccccc
Q 042887 111 ITVCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 111 ~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
++++... .......++||||| +|+|.+++......+
T Consensus 114 ~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l 149 (364)
T 3op5_A 114 WGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEANAKRF 149 (364)
T ss_dssp EEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHTTSCC
T ss_pred Eeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhccCCC
Confidence 9987641 12236689999999 999999997654333
No 386
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=109.76 Aligned_cols=97 Identities=18% Similarity=0.214 Sum_probs=72.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECC---CCcEEEEEEeeccccc-----------hhhhHHHHHHHHhhcCCCCcccccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGE---TGTTVAVKVMNLKQKG-----------AAKSFVTECEALSNVRHRNLIKIIT 112 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~---~~~~~avK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~nIv~l~~ 112 (628)
.++|++.+.||+|+||.||+|.+.. ++..||+|+....... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 3679999999999999999999987 7788999998754311 2234778889999999999999999
Q ss_pred eeeeccccccceeeeeecccccCCchhhhhccc
Q 042887 113 VCSSIDFKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 113 ~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
++... +......|+||||+ +++|.+++....
T Consensus 116 ~~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~~ 146 (345)
T 2v62_A 116 SGLTE-FKGRSYRFMVMERL-GIDLQKISGQNG 146 (345)
T ss_dssp EEEEE-SSSCEEEEEEEECE-EEEHHHHCBGGG
T ss_pred ccccc-cCCCcEEEEEEecc-CCCHHHHHHhcC
Confidence 87541 23467899999999 999999987543
No 387
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.83 E-value=1.5e-09 Score=109.92 Aligned_cols=92 Identities=8% Similarity=0.089 Sum_probs=71.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECC--------CCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceee---
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGE--------TGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCS--- 115 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~--------~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~--- 115 (628)
.++|++.+.||+|+||.||+|++.. .++.||+|++... +.+.+|++++++++||||+++++...
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3689999999999999999999987 3789999998743 46889999999999999998533211
Q ss_pred --------eccccccceeeeeecccccCCchhhhhcc
Q 042887 116 --------SIDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 116 --------~~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
..........++||||+ +|+|.+++...
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~ 151 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS 151 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC
Confidence 00012357889999999 99999999765
No 388
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.83 E-value=4.1e-09 Score=108.85 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=68.3
Q ss_pred CCCCc-CceeecCCceeEEEEEEC--CCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 48 NNFSA-SNMIGQGSFGFVYKGKLG--ETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 48 ~~~~~-~~~iG~G~~g~V~~~~~~--~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
+.|++ .++||+|+||.||+|++. .+++.||+|++.... ....+.+|+.+|++++||||+++++++.. .....
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLS---HADRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCe
Confidence 44666 458999999999999976 468899999986532 33578899999999999999999999653 34678
Q ss_pred eeeeecccccCCchhhhhcc
Q 042887 125 KALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l~~~ 144 (628)
.|+||||+.+ ++.+++...
T Consensus 95 ~~lv~e~~~~-~l~~~~~~~ 113 (405)
T 3rgf_A 95 VWLLFDYAEH-DLWHIIKFH 113 (405)
T ss_dssp EEEEEECCSE-EHHHHHHHH
T ss_pred EEEEEeCCCC-CHHHHHHHh
Confidence 9999999985 777777543
No 389
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.82 E-value=2.5e-09 Score=110.14 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=75.1
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC--------CCCcccccceeeecc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR--------HRNLIKIITVCSSID 118 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~--------h~nIv~l~~~~~~~~ 118 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++... ....+.+.+|+.+++.++ |+||+++++++...
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~- 113 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS- 113 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE-
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec-
Confidence 46899999999999999999999999999999999754 234567889999999986 78899999986521
Q ss_pred ccccceeeeeecccccCCchhhhhc
Q 042887 119 FKGVDFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~ 143 (628)
.......++||||+ ++++.+++..
T Consensus 114 ~~~~~~~~lv~e~~-~~~l~~~~~~ 137 (397)
T 1wak_A 114 GVNGTHICMVFEVL-GHHLLKWIIK 137 (397)
T ss_dssp ETTEEEEEEEECCC-CCBHHHHHHH
T ss_pred CCCCceEEEEEecc-CccHHHHHHh
Confidence 11356889999999 4566555543
No 390
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.81 E-value=4.2e-09 Score=105.70 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=72.0
Q ss_pred HhCCCCcC-ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHH-HHhhcCCCCcccccceeeeccccccc
Q 042887 46 ATNNFSAS-NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECE-ALSNVRHRNLIKIITVCSSIDFKGVD 123 (628)
Q Consensus 46 ~~~~~~~~-~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~-~l~~l~h~nIv~l~~~~~~~~~~~~~ 123 (628)
..++|++. +.||+|+||.||+|.+..+|+.||+|++.... ...+|+. .++.+.||||+++++++... .....
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~ 99 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----KARQEVDHHWQASGGPHIVCILDVYENM-HHGKR 99 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----HHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----HHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCc
Confidence 35678885 46999999999999999999999999986532 2233333 35667899999999986541 12245
Q ss_pred eeeeeecccccCCchhhhhccc
Q 042887 124 FKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..++|||||++|+|.+++....
T Consensus 100 ~~~lv~e~~~gg~L~~~l~~~~ 121 (336)
T 3fhr_A 100 CLLIIMECMEGGELFSRIQERG 121 (336)
T ss_dssp EEEEEEECCTTEEHHHHHHTC-
T ss_pred eEEEEEeccCCCCHHHHHHhcC
Confidence 6899999999999999997654
No 391
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.81 E-value=6e-09 Score=108.24 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=75.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc------CCCCcccccceeeecccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV------RHRNLIKIITVCSSIDFK 120 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l------~h~nIv~l~~~~~~~~~~ 120 (628)
..+|++.+.||+|+||.||+|.+..+++.||||++.... ...+.+.+|+.+++.+ .|+||+++++++..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~---- 170 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF---- 170 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE----
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc----
Confidence 457999999999999999999999999999999997542 2345677888888877 56799999998643
Q ss_pred ccceeeeeecccccCCchhhhhccc
Q 042887 121 GVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
....++||||+. +++.+++....
T Consensus 171 -~~~~~lv~e~~~-~~L~~~l~~~~ 193 (429)
T 3kvw_A 171 -RNHICMTFELLS-MNLYELIKKNK 193 (429)
T ss_dssp -TTEEEEEECCCC-CBHHHHHHHTT
T ss_pred -CCeEEEEEeccC-CCHHHHHHhcc
Confidence 678999999997 58888886543
No 392
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.80 E-value=1.9e-09 Score=107.54 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=79.8
Q ss_pred HHHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------chhhhHHHHHHHHhhcC--CCCccccccee
Q 042887 43 LSKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------GAAKSFVTECEALSNVR--HRNLIKIITVC 114 (628)
Q Consensus 43 ~~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------~~~~~~~~E~~~l~~l~--h~nIv~l~~~~ 114 (628)
.....++|++.+.||+|+||.||+|++..+++.||+|++..... ...+.+.+|+.++++++ ||||+++++++
T Consensus 38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~ 117 (320)
T 3a99_A 38 KEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWF 117 (320)
T ss_dssp --CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEE
T ss_pred cCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEE
Confidence 34456789999999999999999999999999999999976432 13356789999999996 59999999995
Q ss_pred eeccccccceeeeeeccccc-CCchhhhhcc
Q 042887 115 SSIDFKGVDFKALIYEYMKC-GSSEDWMHQS 144 (628)
Q Consensus 115 ~~~~~~~~~~~~lv~e~~~~-g~L~~~l~~~ 144 (628)
. .....++|||++.+ +++.+++...
T Consensus 118 ~-----~~~~~~lv~e~~~~~~~L~~~l~~~ 143 (320)
T 3a99_A 118 E-----RPDSFVLILERPEPVQDLFDFITER 143 (320)
T ss_dssp E-----CSSEEEEEEECCSSEEEHHHHHHHH
T ss_pred e-----cCCcEEEEEEcCCCCccHHHHHhcc
Confidence 4 47789999999976 8999988653
No 393
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.78 E-value=3.9e-09 Score=107.62 Aligned_cols=98 Identities=10% Similarity=-0.009 Sum_probs=64.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc---chhhhHHHHHHHHhhc--CCCCccccccee-------
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK---GAAKSFVTECEALSNV--RHRNLIKIITVC------- 114 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~---~~~~~~~~E~~~l~~l--~h~nIv~l~~~~------- 114 (628)
..+|++.+.||+|+||.||+|++..+|+.||+|++..... ...+.+.+|+.+++.+ +||||++++..+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 3458999999999999999999999999999999987432 3445677885544444 699988855332
Q ss_pred eeccc------------cccceeeeeecccccCCchhhhhccc
Q 042887 115 SSIDF------------KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 115 ~~~~~------------~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..... ......|+|||||+ |+|.+++....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~ 182 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLD 182 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHH
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhc
Confidence 11000 00145899999999 89999997653
No 394
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.78 E-value=3.8e-09 Score=106.18 Aligned_cols=92 Identities=16% Similarity=0.313 Sum_probs=75.7
Q ss_pred hCCCCcCceeecCCceeEEEEEE-CCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCC------cccccceeeeccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKL-GETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN------LIKIITVCSSIDF 119 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~-~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~l~~~~~~~~~ 119 (628)
.++|++.+.||+|+||.||+|.+ ..+++.||+|+++... ...+.+.+|+.+++.++|++ ++++++++.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~---- 87 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE---- 87 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE----
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc----
Confidence 46899999999999999999998 4578999999987543 34567889999999887665 888888854
Q ss_pred cccceeeeeecccccCCchhhhhccc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
..+..++||||+ ++++.+++....
T Consensus 88 -~~~~~~lv~e~~-~~~l~~~l~~~~ 111 (339)
T 1z57_A 88 -HHGHICIVFELL-GLSTYDFIKENG 111 (339)
T ss_dssp -ETTEEEEEEECC-CCBHHHHHHHTT
T ss_pred -cCCcEEEEEcCC-CCCHHHHHHhcC
Confidence 477899999999 889999886543
No 395
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.76 E-value=1.1e-08 Score=107.46 Aligned_cols=95 Identities=27% Similarity=0.362 Sum_probs=74.9
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeeccccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.++|++.+.||+|+||.||+|++..+++.||||++..... ...+.+|+++++.++|++.+..+..+. ......+
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~----~~~~~~~ 79 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFG----VEGDYNV 79 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEE----EETTEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEE----eeCCEEE
Confidence 4689999999999999999999999999999998865432 356889999999998755444443332 2367889
Q ss_pred eeecccccCCchhhhhcccccc
Q 042887 127 LIYEYMKCGSSEDWMHQSNDKL 148 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~~~~ 148 (628)
+||||+ +++|.+++......+
T Consensus 80 lvme~~-g~sL~~ll~~~~~~l 100 (483)
T 3sv0_A 80 LVMDLL-GPSLEDLFNFCSRKL 100 (483)
T ss_dssp EEEECC-CCBHHHHHHHTTTCC
T ss_pred EEEECC-CCCHHHHHHhhcCCC
Confidence 999999 899999987544333
No 396
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=98.76 E-value=6e-09 Score=103.52 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=77.9
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--cchhhhHHHHHHHHhhcC--CCCcccccceeeeccc
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--KGAAKSFVTECEALSNVR--HRNLIKIITVCSSIDF 119 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~ 119 (628)
....++|++.+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+.++++++ ||||+++++++.
T Consensus 24 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~---- 98 (313)
T 3cek_A 24 SVKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI---- 98 (313)
T ss_dssp EETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEE----
T ss_pred eeccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEee----
Confidence 344567999999999999999999985 58999999997543 344577899999999997 599999999854
Q ss_pred cccceeeeeecccccCCchhhhhcc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
.....++||| +.+++|.+++...
T Consensus 99 -~~~~~~lv~e-~~~~~L~~~l~~~ 121 (313)
T 3cek_A 99 -TDQYIYMVME-CGNIDLNSWLKKK 121 (313)
T ss_dssp -CSSEEEEEEC-CCSEEHHHHHHHC
T ss_pred -cCCEEEEEEe-cCCCcHHHHHHhc
Confidence 3678999999 6678999998754
No 397
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.76 E-value=6.2e-09 Score=103.59 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=63.2
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc-chhhh-HHHHHHHHhhcCCCCcccccceeeeccccccce
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-GAAKS-FVTECEALSNVRHRNLIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-~~~~~-~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 124 (628)
.++|++.+.||+|+||.||+|++..+|+.||+|++..... ....+ +.++..+++.++||||+++++++. ....
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~-----~~~~ 98 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFI-----TNTD 98 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-----CSSE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEe-----cCCc
Confidence 4678999999999999999999999999999999976432 22223 344445678889999999999964 4678
Q ss_pred eeeeecccccCCchhhh
Q 042887 125 KALIYEYMKCGSSEDWM 141 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~~l 141 (628)
.++||||+ ++.+....
T Consensus 99 ~~lv~e~~-~~~~~~l~ 114 (318)
T 2dyl_A 99 VFIAMELM-GTCAEKLK 114 (318)
T ss_dssp EEEEECCC-SEEHHHHH
T ss_pred EEEEEecc-CCcHHHHH
Confidence 99999999 44444444
No 398
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.73 E-value=8.7e-09 Score=105.12 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=77.4
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-----------CCCcccccceee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-----------HRNLIKIITVCS 115 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~nIv~l~~~~~ 115 (628)
.++|++.+.||+|+||.||+|++..+++.||+|++.... ...+.+.+|+.+++++. ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 467999999999999999999999999999999987532 23466889999988886 899999999865
Q ss_pred eccccccceeeeeecccccCCchhhhhcc
Q 042887 116 SIDFKGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 116 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
... ......++||||+ ++++.+++...
T Consensus 97 ~~~-~~~~~~~lv~e~~-~~~L~~~~~~~ 123 (373)
T 1q8y_A 97 HKG-PNGVHVVMVFEVL-GENLLALIKKY 123 (373)
T ss_dssp EEE-TTEEEEEEEECCC-CEEHHHHHHHT
T ss_pred ccC-CCCceEEEEEecC-CCCHHHHHHHh
Confidence 411 1234789999999 88999988753
No 399
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.72 E-value=1.2e-08 Score=106.33 Aligned_cols=87 Identities=23% Similarity=0.222 Sum_probs=69.9
Q ss_pred CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceeee
Q 042887 49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKAL 127 (628)
Q Consensus 49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~l 127 (628)
.|...+.||+|+||+||.+.. .+|+.||||++.... .+.+.+|+.+++++ +|||||++++++. .....|+
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~~~~~~~-----~~~~~~l 86 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGS-FQGRPVAVKRMLIDF---CDIALMEIKLLTESDDHPNVIRYYCSET-----TDRFLYI 86 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEE-SSSSEEEEEEEEGGG---HHHHHHHHHHHHHHTTSTTBCCEEEEEE-----CSSEEEE
T ss_pred eeeccCeEeeCCCeEEEEEEE-ECCeEEEEEEEcHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCeEEE
Confidence 355568899999999986644 579999999986532 34678999999887 7999999998853 4788999
Q ss_pred eecccccCCchhhhhccc
Q 042887 128 IYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 128 v~e~~~~g~L~~~l~~~~ 145 (628)
|||||. |+|.+++....
T Consensus 87 v~E~~~-gsL~~~l~~~~ 103 (434)
T 2rio_A 87 ALELCN-LNLQDLVESKN 103 (434)
T ss_dssp EECCCS-EEHHHHHHTC-
T ss_pred EEecCC-CCHHHHHhccC
Confidence 999996 59999997654
No 400
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.71 E-value=8.5e-09 Score=105.89 Aligned_cols=86 Identities=27% Similarity=0.374 Sum_probs=66.8
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCcccccceeeecc-cccccee
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNLIKIITVCSSID-FKGVDFK 125 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~-~~~~~~~ 125 (628)
..+|++.+.||+|+||.||+|++..+++ ||+|++..... ...+|+.+|+.++||||+++++++.... .......
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~ 113 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDE-VAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCe-EEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence 3569999999999999999999976655 88888754322 2247999999999999999999876522 1334458
Q ss_pred eeeecccccCCc
Q 042887 126 ALIYEYMKCGSS 137 (628)
Q Consensus 126 ~lv~e~~~~g~L 137 (628)
++||||++++.+
T Consensus 114 ~lv~e~~~~~l~ 125 (394)
T 4e7w_A 114 NLVLEYVPETVY 125 (394)
T ss_dssp EEEEECCSEEHH
T ss_pred EEEeeccCccHH
Confidence 899999997543
No 401
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.69 E-value=3.5e-08 Score=105.16 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=60.0
Q ss_pred CcCceeecCCceeEEEEEECCCCcEEEEEEeeccc--------cchhhhHHHHHHHHhhcCCCCcccccceeeecccccc
Q 042887 51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ--------KGAAKSFVTECEALSNVRHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~--------~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~ 122 (628)
...+.||+|+||.||+|.+ .++.+|+|...... ....+++.+|++++++++||||+++..++.. .
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~-----~ 411 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVD-----L 411 (540)
T ss_dssp ---------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEE-----T
T ss_pred CCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEe-----C
Confidence 4467899999999999965 67889999864321 1123568999999999999999955444332 4
Q ss_pred ceeeeeecccccCCchhhhhc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQ 143 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~ 143 (628)
...|+|||||++|+|.+++.+
T Consensus 412 ~~~~lVmE~~~ggsL~~~l~~ 432 (540)
T 3en9_A 412 DNKRIMMSYINGKLAKDVIED 432 (540)
T ss_dssp TTTEEEEECCCSEEHHHHSTT
T ss_pred CccEEEEECCCCCCHHHHHHH
Confidence 566999999999999999876
No 402
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.68 E-value=2.8e-08 Score=96.69 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=65.9
Q ss_pred HhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc------------------chhhhHHHHHHHHhhcCCCCc
Q 042887 46 ATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK------------------GAAKSFVTECEALSNVRHRNL 107 (628)
Q Consensus 46 ~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~------------------~~~~~~~~E~~~l~~l~h~nI 107 (628)
....|++.+.||+|+||.||+|.+ .+|+.||+|+++.... .....+.+|+.+|++++ |
T Consensus 88 ~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~- 163 (282)
T 1zar_A 88 SGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--G- 163 (282)
T ss_dssp TTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--T-
T ss_pred CCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--C-
Confidence 345566779999999999999999 7899999999964321 13456899999999998 4
Q ss_pred ccccceeeeccccccceeeeeecccccCCchh
Q 042887 108 IKIITVCSSIDFKGVDFKALIYEYMKCGSSED 139 (628)
Q Consensus 108 v~l~~~~~~~~~~~~~~~~lv~e~~~~g~L~~ 139 (628)
+++.+++. ....|+||||++||+|.+
T Consensus 164 ~~v~~~~~------~~~~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 164 LAVPKVYA------WEGNAVLMELIDAKELYR 189 (282)
T ss_dssp SSSCCEEE------EETTEEEEECCCCEEGGG
T ss_pred CCcCeEEe------ccceEEEEEecCCCcHHH
Confidence 66666532 355699999999999988
No 403
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.67 E-value=1.4e-08 Score=105.32 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=70.9
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhc-CCCCcccccceeeeccccccceee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
.+|+..+.||+|+||.||.... .+|+.||||++..... ..+.+|+.+++++ +|||||++++++. .....|
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~-~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~-----~~~~~~ 94 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEK-----DRQFQY 94 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEE-SSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEE-----ETTEEE
T ss_pred EEEecCCeeecCcCEEEEEEEE-eCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEe-----cCCEEE
Confidence 4688889999999999664333 4789999999865332 3467899999999 7999999998854 477889
Q ss_pred eeecccccCCchhhhhccc
Q 042887 127 LIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 127 lv~e~~~~g~L~~~l~~~~ 145 (628)
+|||||. |+|.+++....
T Consensus 95 lv~E~~~-g~L~~~l~~~~ 112 (432)
T 3p23_A 95 IAIELCA-ATLQEYVEQKD 112 (432)
T ss_dssp EEEECCS-EEHHHHHHSSS
T ss_pred EEEECCC-CCHHHHHHhcC
Confidence 9999997 58999987654
No 404
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.67 E-value=2e-08 Score=102.68 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=75.5
Q ss_pred HHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCC-----cccccceeeecc
Q 042887 45 KATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRN-----LIKIITVCSSID 118 (628)
Q Consensus 45 ~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~n-----Iv~l~~~~~~~~ 118 (628)
...++|++.+.||+|+||.||+|++..+++.||||+++... .....+.+|+.+++.+. |++ |+++++.+.
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~--- 126 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM--- 126 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE---
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeec---
Confidence 34678999999999999999999999999999999997532 23456778888888885 554 777777754
Q ss_pred ccccceeeeeecccccCCchhhhhccc
Q 042887 119 FKGVDFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 119 ~~~~~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
.....++||||+. |++.+++....
T Consensus 127 --~~~~~~lv~e~~~-~~L~~~l~~~~ 150 (382)
T 2vx3_A 127 --FRNHLCLVFEMLS-YNLYDLLRNTN 150 (382)
T ss_dssp --ETTEEEEEEECCC-CBHHHHHHHTT
T ss_pred --cCCceEEEEecCC-CCHHHHHhhcC
Confidence 3678999999997 48998887543
No 405
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.63 E-value=2e-08 Score=101.57 Aligned_cols=91 Identities=13% Similarity=0.252 Sum_probs=72.5
Q ss_pred hCCCCcCceeecCCceeEEEEEECCCC-cEEEEEEeeccccchhhhHHHHHHHHhhcCCCC------cccccceeeeccc
Q 042887 47 TNNFSASNMIGQGSFGFVYKGKLGETG-TTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN------LIKIITVCSSIDF 119 (628)
Q Consensus 47 ~~~~~~~~~iG~G~~g~V~~~~~~~~~-~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~l~~~~~~~~~ 119 (628)
.++|++.+.||+|+||.||+|.+..++ +.||+|+++... ...+.+.+|+.+++.++|++ ++.+.+++
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~----- 91 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWF----- 91 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEE-----
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeee-----
Confidence 478999999999999999999998777 689999997532 34467889999999998766 77777764
Q ss_pred cccceeeeeecccccCCchhhhhcc
Q 042887 120 KGVDFKALIYEYMKCGSSEDWMHQS 144 (628)
Q Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (628)
......++||||+ ++++.+++...
T Consensus 92 ~~~~~~~lv~e~~-~~~l~~~l~~~ 115 (355)
T 2eu9_A 92 NFHGHMCIAFELL-GKNTFEFLKEN 115 (355)
T ss_dssp EETTEEEEEEECC-CCBHHHHHHHT
T ss_pred eeCCeEEEEEecc-CCChHHHHHhc
Confidence 3467899999999 56666666543
No 406
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=1.2e-08 Score=97.09 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=63.0
Q ss_pred CcccE--EEccCCccc---cccchhhhCCCCCCEEecccCcCccc--ccccccCCCCCCEeecccccCcccCCcCccCCC
Q 042887 162 LKLEM--IDVGDNQLI---GKFPDFIANFSALEAIDISANMLGGR--IPDSLCQLRSLNYLSISENNFSCKLPLSIWNIS 234 (628)
Q Consensus 162 ~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~ 234 (628)
+.|.. ++++.|+.. ...+-...++++|+.|+|++|+|+++ +|..+..+++|++|+|++|.|++. ..+..+.
T Consensus 141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~ 218 (267)
T 3rw6_A 141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK 218 (267)
T ss_dssp HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence 34554 666777433 22222234677888888888888763 346667788888888888888753 2233333
Q ss_pred --CCCEEEeecccCcccCCh------hhhhCCCCCcEEe
Q 042887 235 --SLEIISLHSNRFEGSLPL------NIGFNIPNVNFLS 265 (628)
Q Consensus 235 --~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~ 265 (628)
+|++|+|++|.+.+.+|. .+...+|+|+.||
T Consensus 219 ~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 219 GLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 778888888877765552 1233455655554
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=1.6e-08 Score=91.58 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=43.1
Q ss_pred cCCCCEeeCcCCcCcccC----CccccCCCCCCeEECcCceeeee----cCccccCCCCCCEEEC--CCCcccccC----
Q 042887 485 LRNLAEFDLSENHFSNEI----PVTLSACTTLEYLHLQGNSFSGS----LPLSLKTLKSIKELDL--SRNNLSGQI---- 550 (628)
Q Consensus 485 l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~l~~~~---- 550 (628)
.++|++|+|++|.+.+.. ...+...++|++|+|++|.|... +...+...++|++|+| ++|.|....
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 344555555555554321 22233334555555555555432 2334445556666666 556665332
Q ss_pred chhhhcccCCCeEeccCCcCc
Q 042887 551 PKYLENLLFLAYLNLSYNHFE 571 (628)
Q Consensus 551 ~~~~~~l~~L~~L~ls~N~l~ 571 (628)
.+.+...++|++|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 233344456666666666654
No 408
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.59 E-value=2.1e-08 Score=95.38 Aligned_cols=96 Identities=23% Similarity=0.336 Sum_probs=59.2
Q ss_pred EEcCCCcCc---cccchhhhccCCCCEeeCcCCcCcc--cCCccccCCCCCCeEECcCceeeeecCccccCCC--CCCEE
Q 042887 467 LDLSGNLLG---GSIPLEVGNLRNLAEFDLSENHFSN--EIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLK--SIKEL 539 (628)
Q Consensus 467 L~Ls~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L 539 (628)
++++.|+.. +..+....++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 456666433 1112222457778888888888776 3345566777777888887777743 2233333 77777
Q ss_pred ECCCCcccccCc-------hhhhcccCCCeEe
Q 042887 540 DLSRNNLSGQIP-------KYLENLLFLAYLN 564 (628)
Q Consensus 540 ~Ls~N~l~~~~~-------~~~~~l~~L~~L~ 564 (628)
+|++|++.+..| ..+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 777777775444 2356677777665
No 409
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.55 E-value=1.5e-08 Score=91.91 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=25.8
Q ss_pred cchhhhCCCCCCEEecccC-cCccc----ccccccCCCCCCEeecccccCc
Q 042887 178 FPDFIANFSALEAIDISAN-MLGGR----IPDSLCQLRSLNYLSISENNFS 223 (628)
Q Consensus 178 ~~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~i~ 223 (628)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.|.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3445556666777777766 66532 2233444555666666666554
No 410
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.31 E-value=2.4e-07 Score=99.41 Aligned_cols=87 Identities=10% Similarity=-0.030 Sum_probs=63.7
Q ss_pred ceeecCCceeEEEEEECCCCcEEEEEEeeccc----------cchhhhHHHHHHHHhhc-CCCCcccccceeeecccccc
Q 042887 54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ----------KGAAKSFVTECEALSNV-RHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~nIv~l~~~~~~~~~~~~ 122 (628)
...+.|+.|.+..++....|+.||+|++.... ....+.|.+|+++|+++ .|+||++++++ +++.
T Consensus 240 ~~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~-----~ed~ 314 (569)
T 4azs_A 240 NQPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAH-----GENA 314 (569)
T ss_dssp CC-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEE-----EECS
T ss_pred hccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEE-----EEEC
Confidence 34667777777766666678999999996531 12345699999999999 69999999999 5668
Q ss_pred ceeeeeecccccCCchhhhhccc
Q 042887 123 DFKALIYEYMKCGSSEDWMHQSN 145 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l~~~~ 145 (628)
...|||||||+||+|.+++.+.+
T Consensus 315 ~~~yLVMEyv~G~~L~d~i~~~~ 337 (569)
T 4azs_A 315 QSGWLVMEKLPGRLLSDMLAAGE 337 (569)
T ss_dssp SEEEEEEECCCSEEHHHHHHTTC
T ss_pred CEEEEEEecCCCCcHHHHHHhCC
Confidence 99999999999999999997654
No 411
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=98.16 E-value=1.1e-06 Score=84.31 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=55.9
Q ss_pred CCcCceeecCCceeEEEEEECCCCcE--EEEEEeeccccc------------------------hhhhHHHHHHHHhhcC
Q 042887 50 FSASNMIGQGSFGFVYKGKLGETGTT--VAVKVMNLKQKG------------------------AAKSFVTECEALSNVR 103 (628)
Q Consensus 50 ~~~~~~iG~G~~g~V~~~~~~~~~~~--~avK~~~~~~~~------------------------~~~~~~~E~~~l~~l~ 103 (628)
|++.+.||+|+||.||+|.+..+|+. ||||+++..... ....+.+|+.+|..+.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999998778888 999987543110 1125789999999998
Q ss_pred CCCcc--cccceeeeccccccceeeeeecccc
Q 042887 104 HRNLI--KIITVCSSIDFKGVDFKALIYEYMK 133 (628)
Q Consensus 104 h~nIv--~l~~~~~~~~~~~~~~~~lv~e~~~ 133 (628)
|+++. ..++ ....++||||+.
T Consensus 129 ~~~i~~p~~~~---------~~~~~lVmE~~g 151 (258)
T 1zth_A 129 EAGVSVPQPYT---------YMKNVLLMEFIG 151 (258)
T ss_dssp HTTCCCCCEEE---------EETTEEEEECCE
T ss_pred hCCCCCCeEEE---------cCCCEEEEEecC
Confidence 88652 2222 235689999994
No 412
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=4.9e-07 Score=79.55 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=41.1
Q ss_pred ceEEcCCCcCccccchhhhccCCCCEeeCcCCc-CcccCCccccCC----CCCCeEECcCce-eeeecCccccCCCCCCE
Q 042887 465 RLLDLSGNLLGGSIPLEVGNLRNLAEFDLSENH-FSNEIPVTLSAC----TTLEYLHLQGNS-FSGSLPLSLKTLKSIKE 538 (628)
Q Consensus 465 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~ 538 (628)
+.||++++.++...-..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. |++..-..+..+++|++
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 556666666554444445555666666666653 444333333332 245555555553 44333333445555555
Q ss_pred EECCCCc
Q 042887 539 LDLSRNN 545 (628)
Q Consensus 539 L~Ls~N~ 545 (628)
|++++|.
T Consensus 144 L~L~~c~ 150 (176)
T 3e4g_A 144 LFLSDLP 150 (176)
T ss_dssp EEEESCT
T ss_pred EECCCCC
Confidence 5555553
No 413
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=9.3e-07 Score=77.79 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=63.6
Q ss_pred cccEEEccCCccccccchhhhCCCCCCEEecccCc-CcccccccccCC----CCCCEeeccccc-CcccCCcCccCCCCC
Q 042887 163 KLEMIDVGDNQLIGKFPDFIANFSALEAIDISANM-LGGRIPDSLCQL----RSLNYLSISENN-FSCKLPLSIWNISSL 236 (628)
Q Consensus 163 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-i~~~~p~~~~~l~~L 236 (628)
+|+.||++++.|+..--..+.++++|+.|+|++|. ++..--..++.+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58899999988887766778888899999999885 665544556665 368888888874 776555567778888
Q ss_pred CEEEeeccc
Q 042887 237 EIISLHSNR 245 (628)
Q Consensus 237 ~~L~L~~n~ 245 (628)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888875
No 414
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.97 E-value=5.8e-06 Score=85.20 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccc---cchhhhHHHHHHHHhhcCC
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVRH 104 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~h 104 (628)
..|...+.||+|+||.||+|++..+|+.||||++.... ....+.+.+|+.+++.+.|
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 34777889999999999999999999999999987432 2335779999999999987
No 415
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=97.92 E-value=5.2e-06 Score=83.07 Aligned_cols=92 Identities=9% Similarity=0.040 Sum_probs=54.4
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeecccc--------------chhhhHHHHHHHHhhcCCCCcccccce
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK--------------GAAKSFVTECEALSNVRHRNLIKIITV 113 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~--------------~~~~~~~~E~~~l~~l~h~nIv~l~~~ 113 (628)
.-|++.+.||+|+||.||+|... +|+.||||+++.... ........++++.....|+|+++++..
T Consensus 95 ~iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~ 173 (397)
T 4gyi_A 95 DVYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEE 173 (397)
T ss_dssp SCSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34899999999999999999984 699999998754210 001112222333333334444444332
Q ss_pred eeec-cccccceeeeeecccccCCchhh
Q 042887 114 CSSI-DFKGVDFKALIYEYMKCGSSEDW 140 (628)
Q Consensus 114 ~~~~-~~~~~~~~~lv~e~~~~g~L~~~ 140 (628)
.... ..-.....++||||++|+.+.+.
T Consensus 174 gv~vp~p~~~~~~~LVME~i~G~~L~~l 201 (397)
T 4gyi_A 174 GFPVPEPIAQSRHTIVMSLVDALPMRQV 201 (397)
T ss_dssp TCSCCCEEEEETTEEEEECCSCEEGGGC
T ss_pred CCCCCeeeeccCceEEEEecCCccHhhh
Confidence 1110 00012345799999998877654
No 416
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.54 E-value=5e-05 Score=68.08 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=30.0
Q ss_pred cccCCCCCCEEEcccccceeeccccc----ccCCCCCEEEccCCcCCCcCCCCccccccccCCCCCceeeccc
Q 042887 278 SFSNASNLQVLDVYKNHFSGQVKIDF----NRLSNLSRLFLSKNNLGTESTSDLDFLTLLTNCSQMEMLYLNT 346 (628)
Q Consensus 278 ~~~~l~~L~~L~L~~N~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 346 (628)
.+..-+.|+.|+|++|+|.......+ ..-+.|++|+|++|.|+..... .....+...+.|+.|+|++
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~--ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA--RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--HHHHHTTTTCCCSEEECCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH--HHHHHHhhCCceeEEECCC
Confidence 34444555555555555543332222 2334555555555555432111 1223344444455555543
No 417
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=6.1e-05 Score=67.54 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=47.5
Q ss_pred CcccEEEccCC-ccccc----cchhhhCCCCCCEEecccCcCccccccc----ccCCCCCCEeecccccCcccCC----c
Q 042887 162 LKLEMIDVGDN-QLIGK----FPDFIANFSALEAIDISANMLGGRIPDS----LCQLRSLNYLSISENNFSCKLP----L 228 (628)
Q Consensus 162 ~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~i~~~~p----~ 228 (628)
+.|+.|+|++| .|... +.+.+..-+.|+.|+|++|.|...-..+ +..-+.|++|+|++|.|.+... +
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45777888775 66432 3345556667777777777776433222 3345667777777776664322 2
Q ss_pred CccCCCCCCEEEeecc
Q 042887 229 SIWNISSLEIISLHSN 244 (628)
Q Consensus 229 ~~~~l~~L~~L~L~~n 244 (628)
++..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3334445666666543
No 418
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=97.17 E-value=0.00072 Score=64.56 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=70.6
Q ss_pred HHHhCCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccc
Q 042887 44 SKATNNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 44 ~~~~~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~ 122 (628)
.....+|.+....|.|+.+.||++.. .++.+++|+...........+.+|+.+++.+. +..+.++++.+. ..
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~-----~~ 82 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFER-----HD 82 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEE-----ET
T ss_pred HHHhccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEe-----cC
Confidence 34457898888899999999999976 46889999987543233457899999999885 667778887754 35
Q ss_pred ceeeeeecccccCCchhhh
Q 042887 123 DFKALIYEYMKCGSSEDWM 141 (628)
Q Consensus 123 ~~~~lv~e~~~~g~L~~~l 141 (628)
+..|+||||++|.++.+.+
T Consensus 83 ~~~~lv~e~i~G~~l~~~~ 101 (263)
T 3tm0_A 83 GWSNLLMSEADGVLCSEEY 101 (263)
T ss_dssp TEEEEEEECCSSEEHHHHC
T ss_pred CceEEEEEecCCeehhhcc
Confidence 7789999999999887653
No 419
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.0006 Score=57.02 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=31.4
Q ss_pred EeeCcCCcCc-ccCCccccCCCCCCeEECcCceeeeecCccccCCCCCCEEECCCCccc
Q 042887 490 EFDLSENHFS-NEIPVTLSACTTLEYLHLQGNSFSGSLPLSLKTLKSIKELDLSRNNLS 547 (628)
Q Consensus 490 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 547 (628)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666664 23343322 34666666666666544555566666666666666554
No 420
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.95 E-value=0.0012 Score=55.14 Aligned_cols=57 Identities=26% Similarity=0.329 Sum_probs=30.3
Q ss_pred eEECcCceee-eecCccccCCCCCCEEECCCCcccccCchhhhcccCCCeEeccCCcCcc
Q 042887 514 YLHLQGNSFS-GSLPLSLKTLKSIKELDLSRNNLSGQIPKYLENLLFLAYLNLSYNHFEG 572 (628)
Q Consensus 514 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~ 572 (628)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...++.|..+++|+.|+|++|++..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 12333221 345666666666665555555666666666666665543
No 421
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=96.49 E-value=0.0046 Score=59.71 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=59.1
Q ss_pred CcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC---Ccccccceeeeccccccceeee
Q 042887 51 SASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR---NLIKIITVCSSIDFKGVDFKAL 127 (628)
Q Consensus 51 ~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~---nIv~l~~~~~~~~~~~~~~~~l 127 (628)
.-.+.+|.|.++.||++.. .+|+.+++|+...........|.+|++.|+.+.+. .+.+++.. +..++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~-~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~---------~~~~l 87 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW---------DDRTL 87 (288)
T ss_dssp EEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE---------ETTEE
T ss_pred cceeeeCCcchhheEEEEe-CCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEe---------cCcEE
Confidence 3356799999999999987 46888999997543333446789999999999865 35556554 13589
Q ss_pred eecccccCCch
Q 042887 128 IYEYMKCGSSE 138 (628)
Q Consensus 128 v~e~~~~g~L~ 138 (628)
||||++++...
T Consensus 88 vme~l~g~~~~ 98 (288)
T 3d1u_A 88 AMEWVDERPPT 98 (288)
T ss_dssp EEECCCCCCCC
T ss_pred EEEecccCCCC
Confidence 99999998753
No 422
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=95.38 E-value=0.015 Score=55.05 Aligned_cols=82 Identities=12% Similarity=-0.005 Sum_probs=57.2
Q ss_pred CCCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCC--cccccceeeecccccccee
Q 042887 48 NNFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN--LIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n--Iv~l~~~~~~~~~~~~~~~ 125 (628)
.+|.+....+.|..+.||++.. .+|+.+++|..... ....+.+|+.+++.+.+.. +.+++.... ..+..
T Consensus 20 ~~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~-----~~~~~ 90 (264)
T 1nd4_A 20 FGYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVT-----EAGRD 90 (264)
T ss_dssp TTCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEE-----CSSCE
T ss_pred CCCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEecc-----CCCCC
Confidence 4455543334566799999975 46778999987543 2356889999999886444 445666532 34568
Q ss_pred eeeecccccCCch
Q 042887 126 ALIYEYMKCGSSE 138 (628)
Q Consensus 126 ~lv~e~~~~g~L~ 138 (628)
++||||++|.++.
T Consensus 91 ~~v~e~i~G~~l~ 103 (264)
T 1nd4_A 91 WLLLGEVPGQDLL 103 (264)
T ss_dssp EEEEECCSSEETT
T ss_pred EEEEEecCCcccC
Confidence 9999999998874
No 423
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=93.13 E-value=0.1 Score=51.93 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=56.4
Q ss_pred cCceeecCCceeEEEEEECCCCcEEEEEEee--ccc-cchhhhHHHHHHHHhhcC--CCCcccccceeeeccccccceee
Q 042887 52 ASNMIGQGSFGFVYKGKLGETGTTVAVKVMN--LKQ-KGAAKSFVTECEALSNVR--HRNLIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 52 ~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~nIv~l~~~~~~~~~~~~~~~~ 126 (628)
..+.++.|.++.||+... .+..+++|+.. ... ......+.+|..+++.+. +..+.+++..+.+. ...+..|
T Consensus 42 ~~~~l~~G~sn~~y~v~~--~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~--~~~g~~~ 117 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVT--PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDE--SVIGRAF 117 (359)
T ss_dssp EEEECCC-CCSCEEEEEC--SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCT--TTTSSCE
T ss_pred eEEEcCCcccceEEEEEE--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCC--CccCCeE
Confidence 356799999999999887 34678888775 332 123457889999999987 45577777775431 1125578
Q ss_pred eeecccccCCchh
Q 042887 127 LIYEYMKCGSSED 139 (628)
Q Consensus 127 lv~e~~~~g~L~~ 139 (628)
+||||++|..+.+
T Consensus 118 ~vme~v~G~~l~~ 130 (359)
T 3dxp_A 118 YIMEFVSGRVLWD 130 (359)
T ss_dssp EEEECCCCBCCCC
T ss_pred EEEEecCCeecCC
Confidence 9999999987743
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=92.12 E-value=0.15 Score=51.57 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=49.2
Q ss_pred CceeecCCceeEEEEEECCCCcEEEEEEeecccc-------chhhhHHHHHHHHhhcCC--CC-cccccceeeecccccc
Q 042887 53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQK-------GAAKSFVTECEALSNVRH--RN-LIKIITVCSSIDFKGV 122 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~n-Iv~l~~~~~~~~~~~~ 122 (628)
.+.+|.|.++.||++....+++.+++|....... ....++.+|.++++.+.. +. +.+++.. +.
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~-------d~ 107 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS-------DT 107 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE-------ET
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE-------cC
Confidence 4579999999999997655678899998653211 134567889998887742 33 3344432 13
Q ss_pred ceeeeeecccccCC
Q 042887 123 DFKALIYEYMKCGS 136 (628)
Q Consensus 123 ~~~~lv~e~~~~g~ 136 (628)
...++|||++++..
T Consensus 108 ~~~~lvmE~l~g~~ 121 (397)
T 2olc_A 108 EMAVTVMEDLSHLK 121 (397)
T ss_dssp TTTEEEECCCTTSE
T ss_pred CccEEEEEeCCCcc
Confidence 34589999997643
No 425
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=91.37 E-value=0.4 Score=45.87 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=55.4
Q ss_pred CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC---Ccccccceeeecccccccee
Q 042887 49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR---NLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~---nIv~l~~~~~~~~~~~~~~~ 125 (628)
...-.+.+|.|..+.||+.+. .+|+.|.+|+...........|.+|+..|+.+... -+.+++.. +..
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l-~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~---------~~~ 85 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVEL-ADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW---------DDR 85 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEE-TTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE---------ETT
T ss_pred CeEEEEecCCCCCeEEEEEEE-CCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec---------cCc
Confidence 445567899999999999987 57899999987654443445688999998888422 23333333 234
Q ss_pred eeeecccccCCc
Q 042887 126 ALIYEYMKCGSS 137 (628)
Q Consensus 126 ~lv~e~~~~g~L 137 (628)
++||||.+++..
T Consensus 86 ~lv~e~l~~~~~ 97 (288)
T 3f7w_A 86 TLAMEWVDERPP 97 (288)
T ss_dssp EEEEECCCCCCC
T ss_pred eEEEEeecccCC
Confidence 789999887654
No 426
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=90.70 E-value=0.029 Score=57.97 Aligned_cols=62 Identities=11% Similarity=0.042 Sum_probs=18.1
Q ss_pred CcCceeecCCceeEEEEEECCCCcEEEE------EEeecc--ccchhhhHHHHHHHHhhcCCCCcccccceee
Q 042887 51 SASNMIGQGSFGFVYKGKLGETGTTVAV------KVMNLK--QKGAAKSFVTECEALSNVRHRNLIKIITVCS 115 (628)
Q Consensus 51 ~~~~~iG~G~~g~V~~~~~~~~~~~~av------K~~~~~--~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~ 115 (628)
.+.+.+| ||+||+|.+......||+ |..... .......|.+|..+++..+|||+++.+.+..
T Consensus 145 ~l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 145 PIYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp CSTTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 3456676 999999999655567888 655432 2233457889999999999999999988743
No 427
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=88.73 E-value=0.93 Score=43.86 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=56.2
Q ss_pred CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC---CCCcccccceeeeccccccceeeeee
Q 042887 53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR---HRNLIKIITVCSSIDFKGVDFKALIY 129 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~---h~nIv~l~~~~~~~~~~~~~~~~lv~ 129 (628)
.+.++.|....+|+... +++.+.+|+.... ....+.+|.+.|+.+. ..-+.+++..+.. .+..++||
T Consensus 41 ~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~-----~g~~~lvm 110 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNS-----QGHSFLLL 110 (312)
T ss_dssp EEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEEC-----SSEEEEEE
T ss_pred eEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeec-----CCceEEEE
Confidence 46789999999999876 4677888987543 2466889998888874 2456677666432 46789999
Q ss_pred cccccCCc
Q 042887 130 EYMKCGSS 137 (628)
Q Consensus 130 e~~~~g~L 137 (628)
|++++...
T Consensus 111 e~l~G~~~ 118 (312)
T 3jr1_A 111 EALNKSKN 118 (312)
T ss_dssp ECCCCCCC
T ss_pred EeccCCCC
Confidence 99998865
No 428
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=84.90 E-value=2 Score=40.27 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=58.7
Q ss_pred CCCCcCceeecCCce-eEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCcccccceeeecccccccee
Q 042887 48 NNFSASNMIGQGSFG-FVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNLIKIITVCSSIDFKGVDFK 125 (628)
Q Consensus 48 ~~~~~~~~iG~G~~g-~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nIv~l~~~~~~~~~~~~~~~ 125 (628)
.+|+. +.+..|.-| .||+.....++..+.+|+.... ....+.+|...|+.+. +--|.+++..+.+ .+..
T Consensus 25 ~g~~~-~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~-----~~~~ 95 (272)
T 4gkh_A 25 YGYRW-ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRT-----PDDA 95 (272)
T ss_dssp TTCEE-EEEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEE-----TTEE
T ss_pred cCCeE-EEccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEE-----CCeE
Confidence 44543 345556554 6898887667778999986543 3456788999888875 3234566666443 5678
Q ss_pred eeeecccccCCchhhhh
Q 042887 126 ALIYEYMKCGSSEDWMH 142 (628)
Q Consensus 126 ~lv~e~~~~g~L~~~l~ 142 (628)
++|||+++|.++.+...
T Consensus 96 ~lvme~l~G~~~~~~~~ 112 (272)
T 4gkh_A 96 WLLTTAIPGKTAFQVLE 112 (272)
T ss_dssp EEEEECCCSEEHHHHHH
T ss_pred EEEEEeeCCcccccccc
Confidence 99999999988766543
No 429
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=83.75 E-value=1.7 Score=42.25 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=52.7
Q ss_pred CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCC--CC--cccccceeeeccccccce
Q 042887 49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRH--RN--LIKIITVCSSIDFKGVDF 124 (628)
Q Consensus 49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h--~n--Iv~l~~~~~~~~~~~~~~ 124 (628)
.+...+.++.|....||+. |+.+++|+.... .....+.+|..+++.+.+ .. +.++++. +.
T Consensus 38 ~i~~v~~l~~G~~n~vy~v-----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---------~~ 101 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC-----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ---------SD 101 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE-----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---------CS
T ss_pred ceEEEEeCCCCCCceEEEE-----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec---------CC
Confidence 4555678999999999987 566888876432 223568899999888865 11 2233222 35
Q ss_pred eeeeecccccCCchh
Q 042887 125 KALIYEYMKCGSSED 139 (628)
Q Consensus 125 ~~lv~e~~~~g~L~~ 139 (628)
.++||||++|..+.+
T Consensus 102 ~~lvme~i~G~~l~~ 116 (320)
T 3r70_A 102 RFNIMKYIKGERITY 116 (320)
T ss_dssp SCEEEECCCCBCCCH
T ss_pred cEEEEeecCCccccc
Confidence 689999999988863
No 430
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=80.61 E-value=3.1 Score=41.12 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=55.7
Q ss_pred CCCcCceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCC--cccccceeeeccccccceee
Q 042887 49 NFSASNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN--LIKIITVCSSIDFKGVDFKA 126 (628)
Q Consensus 49 ~~~~~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n--Iv~l~~~~~~~~~~~~~~~~ 126 (628)
.....+.++.|....+|+... +|+.+++|..... ..+.+|+.++..+.... +.+++..+.. .....|
T Consensus 42 ~~~~i~~l~gG~~n~~y~v~~--~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~----~~g~~~ 110 (362)
T 3ovc_A 42 SVSDLMQLSEGEESRAFSFDV--GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEF----SESLTY 110 (362)
T ss_dssp CCEEEEEEEECSSEEEEEEEE--TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEES----SSSCEE
T ss_pred CCceEEECCCCCcceEEEEEE--CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccC----CCCCeE
Confidence 344457789999999999886 5788999987432 25888999998886433 3445544332 125679
Q ss_pred eeecccccCCch
Q 042887 127 LIYEYMKCGSSE 138 (628)
Q Consensus 127 lv~e~~~~g~L~ 138 (628)
+||||++|..+.
T Consensus 111 lv~e~l~G~~l~ 122 (362)
T 3ovc_A 111 CISRRAQGVTLQ 122 (362)
T ss_dssp EEEECCCSEETT
T ss_pred EEEEecCCCCcc
Confidence 999999987654
No 431
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=78.47 E-value=3.6 Score=39.52 Aligned_cols=76 Identities=9% Similarity=0.061 Sum_probs=52.5
Q ss_pred CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC---Ccccccceeeeccccccceeeeee
Q 042887 53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR---NLIKIITVCSSIDFKGVDFKALIY 129 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~---nIv~l~~~~~~~~~~~~~~~~lv~ 129 (628)
.+.++.|....||+. |+.+++|+... ......+.+|.++|+.+.+. -|.+.+..+. ...+..+++|
T Consensus 24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~----~~~g~~~~v~ 92 (306)
T 3tdw_A 24 VESLGEGFRNYAILV-----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGK----RSDGNPFVGY 92 (306)
T ss_dssp EEEEEECSSEEEEEE-----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEE----CTTSCEEEEE
T ss_pred eeecCCCcceeEEEE-----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecc----cCCCceEEEE
Confidence 356888988899987 46688888532 23356788999999999753 2334444432 1245568999
Q ss_pred cccccCCchh
Q 042887 130 EYMKCGSSED 139 (628)
Q Consensus 130 e~~~~g~L~~ 139 (628)
|+++|..+.+
T Consensus 93 e~i~G~~l~~ 102 (306)
T 3tdw_A 93 RKVQGQILGE 102 (306)
T ss_dssp ECCCSEECHH
T ss_pred eccCCeECch
Confidence 9999988765
No 432
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=77.07 E-value=2.5 Score=40.58 Aligned_cols=78 Identities=10% Similarity=0.102 Sum_probs=50.8
Q ss_pred CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcC-CCCc--ccccceeeeccccccceeeeee
Q 042887 53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVR-HRNL--IKIITVCSSIDFKGVDFKALIY 129 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~-h~nI--v~l~~~~~~~~~~~~~~~~lv~ 129 (628)
.+.++.|....||+.. ..+++|+.... .....+.+|+++|+.+. +..+ .+++..... -......|+||
T Consensus 25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~--~~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMP--SETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCC--CSSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCC--CCCCCcceEEE
Confidence 4568999999999853 45888886432 33567889999998884 3332 233332211 11123568899
Q ss_pred cccccCCchh
Q 042887 130 EYMKCGSSED 139 (628)
Q Consensus 130 e~~~~g~L~~ 139 (628)
|+++|..+.+
T Consensus 96 ~~i~G~~l~~ 105 (304)
T 3sg8_A 96 TKIKGVPLTP 105 (304)
T ss_dssp ECCCCEECCH
T ss_pred cccCCeECCc
Confidence 9999988764
No 433
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=72.93 E-value=2.8 Score=41.29 Aligned_cols=85 Identities=8% Similarity=-0.001 Sum_probs=55.0
Q ss_pred cee-ecCCceeEEEEEEC--C----CCcEEEEEEeeccc---cchhhhHHHHHHHHhhcC-C--CCcccccceeeecccc
Q 042887 54 NMI-GQGSFGFVYKGKLG--E----TGTTVAVKVMNLKQ---KGAAKSFVTECEALSNVR-H--RNLIKIITVCSSIDFK 120 (628)
Q Consensus 54 ~~i-G~G~~g~V~~~~~~--~----~~~~~avK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~nIv~l~~~~~~~~~~ 120 (628)
+.+ +.|....+|+.... . +++.+++|+..... ......+.+|+.+++.+. + -.+.+++..+.+..
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~-- 103 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGD-- 103 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSST--
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCC--
Confidence 567 88889999988762 0 15678888765432 112356788999888884 3 24556666543211
Q ss_pred ccceeeeeecccccCCchhh
Q 042887 121 GVDFKALIYEYMKCGSSEDW 140 (628)
Q Consensus 121 ~~~~~~lv~e~~~~g~L~~~ 140 (628)
..+..++|||+++|..+.+.
T Consensus 104 ~~g~~~~v~e~l~G~~l~~~ 123 (357)
T 3ats_A 104 VLGTPFFLMDYVEGVVPPDV 123 (357)
T ss_dssp TTSSCEEEEECCCCBCCCBT
T ss_pred ccCCceEEEEecCCCChhhc
Confidence 12456899999998877653
No 434
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=61.59 E-value=5.8 Score=25.17 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=4.6
Q ss_pred HHHhhhhcccc
Q 042887 10 CLIIVYTGRRK 20 (628)
Q Consensus 10 ~~~~~~~~~~~ 20 (628)
.++|+|.+||+
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 33344444444
No 435
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=60.77 E-value=5.7 Score=25.26 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=4.5
Q ss_pred HHHhhhhcccc
Q 042887 10 CLIIVYTGRRK 20 (628)
Q Consensus 10 ~~~~~~~~~~~ 20 (628)
.++|+|.+||+
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 33334444443
No 436
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=58.96 E-value=18 Score=34.88 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=41.8
Q ss_pred ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCC--CCcccccceeee-ccccccceeeeeec
Q 042887 54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRH--RNLIKIITVCSS-IDFKGVDFKALIYE 130 (628)
Q Consensus 54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h--~nIv~l~~~~~~-~~~~~~~~~~lv~e 130 (628)
+.++.|..+.||+.... +..+++|+.... ......|..+++.+.. -.+.+++..... ......+..+++|+
T Consensus 38 ~~l~gG~~n~~~~v~~~--~~~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~ 111 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTD--SGAVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD 111 (346)
T ss_dssp EECC----CEEEEEEET--TEEEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred eeccccccCcEEEEEeC--CCCEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence 34666778999998873 345889988652 1334455555555531 123333321000 00112456789999
Q ss_pred ccccCCch
Q 042887 131 YMKCGSSE 138 (628)
Q Consensus 131 ~~~~g~L~ 138 (628)
|++|..+.
T Consensus 112 ~i~G~~~~ 119 (346)
T 2q83_A 112 WIEGRPFE 119 (346)
T ss_dssp CCCCBCCC
T ss_pred eecCccCC
Confidence 99987654
No 437
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.25 E-value=15 Score=28.32 Aligned_cols=42 Identities=10% Similarity=0.021 Sum_probs=19.8
Q ss_pred cccccccCCCCCCEeecccccCcccCCcCccCCCCCCEEEeec
Q 042887 201 RIPDSLCQLRSLNYLSISENNFSCKLPLSIWNISSLEIISLHS 243 (628)
Q Consensus 201 ~~~~~~~~l~~L~~L~Ls~N~i~~~~p~~~~~l~~L~~L~L~~ 243 (628)
+...+|.++.+|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444555555555555433 3334444555555555555443
No 438
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.38 E-value=28 Score=26.67 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=37.6
Q ss_pred CccccccchhhhCCCCCCEEecccCcCcccccccccCCCCCCEeeccccc
Q 042887 172 NQLIGKFPDFIANFSALEAIDISANMLGGRIPDSLCQLRSLNYLSISENN 221 (628)
Q Consensus 172 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 221 (628)
..++.+-..+|.++++|+.+.+-.+ ++.+-..+|.++.+|+.+.+....
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 3456666778888888988888764 555777888899999988887653
No 439
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=52.30 E-value=8.9 Score=24.30 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.9
Q ss_pred HHHHhhhhccccc
Q 042887 9 ACLIIVYTGRRKH 21 (628)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (628)
..++++|.+||+.
T Consensus 28 ~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 28 GVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHhheehhhh
Confidence 3333445555543
No 440
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=51.76 E-value=56 Score=30.96 Aligned_cols=98 Identities=4% Similarity=-0.049 Sum_probs=52.9
Q ss_pred cccHHHHHHHhCCCCc-----CceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCC--ccc
Q 042887 37 MVSYADLSKATNNFSA-----SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRN--LIK 109 (628)
Q Consensus 37 ~~~~~~~~~~~~~~~~-----~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~n--Iv~ 109 (628)
.++..+.......|.+ .+.++.|....+|+.... +| .+++|..... ...+.+..|..++..+.... +.+
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEES-SC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeC-Cc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCc
Confidence 3445555555555654 234667888899998873 33 6888887652 12345667888877774222 233
Q ss_pred ccceeee-ccccccceeeeeecccccCCch
Q 042887 110 IITVCSS-IDFKGVDFKALIYEYMKCGSSE 138 (628)
Q Consensus 110 l~~~~~~-~~~~~~~~~~lv~e~~~~g~L~ 138 (628)
++..... .-....+..+.+++|++|..+.
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~ 111 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLR 111 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCS
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCC
Confidence 3322100 0001134568899999987653
No 441
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=37.76 E-value=67 Score=30.50 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=48.0
Q ss_pred ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCC--Ccccccceeeecc--ccccceeeeee
Q 042887 54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHR--NLIKIITVCSSID--FKGVDFKALIY 129 (628)
Q Consensus 54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~--nIv~l~~~~~~~~--~~~~~~~~lv~ 129 (628)
..++ |.-..||+... .+|+.+++|...... .....+.+|..++..+... .+.+++.. ++. ....+..+.+|
T Consensus 32 ~~l~-g~~n~~y~v~~-~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~--~g~~~~~~~g~~~~l~ 106 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQD-EDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAF--NGQTLLNHQGFYFAVF 106 (328)
T ss_dssp EEEC-CSSSEEEEECC-TTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCB--TTBSCEEETTEEEEEE
T ss_pred Eeec-CcccceEEEEc-CCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeec--CCcEEEEECCEEEEEE
Confidence 3466 77789998765 346679999876331 2335667788887777422 23444332 100 11245667899
Q ss_pred cccccCCc
Q 042887 130 EYMKCGSS 137 (628)
Q Consensus 130 e~~~~g~L 137 (628)
++++|..+
T Consensus 107 ~~i~G~~~ 114 (328)
T 1zyl_A 107 PSVGGRQF 114 (328)
T ss_dssp ECCCCEEC
T ss_pred EecCCCCC
Confidence 99987654
No 442
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=32.53 E-value=39 Score=33.77 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=42.8
Q ss_pred CceeecCCceeEEEEEECCCCcEEEEEEeecc-----cc--chhhhHHHHHHHHhhc---CCCCcccccceeeecccccc
Q 042887 53 SNMIGQGSFGFVYKGKLGETGTTVAVKVMNLK-----QK--GAAKSFVTECEALSNV---RHRNLIKIITVCSSIDFKGV 122 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~-----~~--~~~~~~~~E~~~l~~l---~h~nIv~l~~~~~~~~~~~~ 122 (628)
.+.+|.|..+.||++.. +++.+.+|..... .. ....+...|.+++... ....+.+++... .
T Consensus 39 i~~l~~G~~n~vyrv~~--~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~-------~ 109 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG--SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD-------R 109 (420)
T ss_dssp EEECCCSSSCEEEEEEC--SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE-------T
T ss_pred EEEccCCCcEEEEEEEc--CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC-------C
Confidence 46789999999999965 5678999943221 11 0112223344333322 223455555441 3
Q ss_pred ceeeeeeccc-cc
Q 042887 123 DFKALIYEYM-KC 134 (628)
Q Consensus 123 ~~~~lv~e~~-~~ 134 (628)
...++|||++ ++
T Consensus 110 ~~~~lv~e~l~~g 122 (420)
T 2pyw_A 110 TMALIGMRYLEPP 122 (420)
T ss_dssp TTTEEEECCCCTT
T ss_pred CccEEEEeecCCc
Confidence 5678999999 76
No 443
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=28.35 E-value=24 Score=21.55 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=3.0
Q ss_pred HHHHHhhh
Q 042887 8 LACLIIVY 15 (628)
Q Consensus 8 ~~~~~~~~ 15 (628)
++.+.+++
T Consensus 27 i~~l~~~~ 34 (38)
T 2k1k_A 27 LLGILVFR 34 (38)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 444
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=26.60 E-value=85 Score=31.81 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=45.7
Q ss_pred ceeecCCceeEEEEEECCCCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCc-ccccceeeeccccccceeeeeeccc
Q 042887 54 NMIGQGSFGFVYKGKLGETGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL-IKIITVCSSIDFKGVDFKALIYEYM 132 (628)
Q Consensus 54 ~~iG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nI-v~l~~~~~~~~~~~~~~~~lv~e~~ 132 (628)
+.|+.|-...+|++.....++.+.+|+........ -...+|..+++.+...++ .++++.+ . . .+||||+
T Consensus 114 ~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~-----~-~---G~v~e~I 183 (458)
T 2qg7_A 114 QIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFF-----T-N---GRIEEFM 183 (458)
T ss_dssp EEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEE-----T-T---EEEEECC
T ss_pred EEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEe-----C-C---eEEEEee
Confidence 56888888999999885445778898764322111 112588888988864444 3455442 1 1 3589999
Q ss_pred ccCCc
Q 042887 133 KCGSS 137 (628)
Q Consensus 133 ~~g~L 137 (628)
+|..+
T Consensus 184 ~G~~l 188 (458)
T 2qg7_A 184 DGYAL 188 (458)
T ss_dssp CSEEC
T ss_pred CCccC
Confidence 87554
No 445
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=25.75 E-value=1e+02 Score=30.88 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=48.2
Q ss_pred CceeecCCceeEEEEEECC-------CCcEEEEEEeeccccchhhhHHHHHHHHhhcCCCCc-ccccceeeeccccccce
Q 042887 53 SNMIGQGSFGFVYKGKLGE-------TGTTVAVKVMNLKQKGAAKSFVTECEALSNVRHRNL-IKIITVCSSIDFKGVDF 124 (628)
Q Consensus 53 ~~~iG~G~~g~V~~~~~~~-------~~~~~avK~~~~~~~~~~~~~~~E~~~l~~l~h~nI-v~l~~~~~~~~~~~~~~ 124 (628)
.+.|+.|....||++.... .++.+.+|+.... ...+.+.+|..+++.+...++ .++++.+ .+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~-----~~--- 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIF-----SG--- 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEE-----TT---
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEe-----CC---
Confidence 3568888889999998753 2577888887331 112456689998888853333 4455432 11
Q ss_pred eeeeecccccCCc
Q 042887 125 KALIYEYMKCGSS 137 (628)
Q Consensus 125 ~~lv~e~~~~g~L 137 (628)
.+|+||++|..+
T Consensus 148 -g~v~e~l~G~~l 159 (429)
T 1nw1_A 148 -GRLEEYIPSRPL 159 (429)
T ss_dssp -EEEECCCCEEEC
T ss_pred -CEEEEEeCCccc
Confidence 388999987555
Done!