BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042890
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 98 PTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 157
P + ++ L L +R S L +L I +L L +LDL GC+ L+ P I G
Sbjct: 199 PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP--- 254
Query: 158 LRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPEC 217
L L L DC L +LP ++RL L LDL GC NL RLP
Sbjct: 255 ------------------LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 218 LGQLSSPITC 227
+ QL P C
Sbjct: 297 IAQL--PANC 304
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 76/153 (49%), Gaps = 29/153 (18%)
Query: 98 PTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 157
PT +P + L + SLKSLP+G+F+ E++S ++ L+
Sbjct: 23 PTGIPAQTTYLDLE---TNSLKSLPNGVFD-------------------ELTS--LTQLY 58
Query: 158 LRGIAIEELPSSIERQLR-LSWLDLSDCKRLKSLPSSLY-RLKSLGILDLHGCSNLQRLP 215
L G ++ LP+ + +L L++L+LS +L+SLP+ ++ +L L L L+ + LQ LP
Sbjct: 59 LGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELALN-TNQLQSLP 116
Query: 216 E-CLGQLSSPITCNLAKTNIERIPESIIQLFVS 247
+ +L+ L + ++ +P+ + S
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 35/162 (21%)
Query: 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKK 106
A+ YL LKSLP+ ++L + Y N+ + +PN + ++
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK---------LQSLPN-GVFNKLTS 77
Query: 107 LVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL 166
L LNL + L+SLP+G+F+ KL +L E++ L ++ L
Sbjct: 78 LTYLNLS-TNQLQSLPNGVFD-------------KLTQLKELA--------LNTNQLQSL 115
Query: 167 PSSI-ERQLRLSWLDLSDCKRLKSLPSSLY-RLKSLGILDLH 206
P + ++ +L L L +LKS+P ++ RL SL + LH
Sbjct: 116 PDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLH 156
>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785
pdb|2EPG|B Chain B, Crystal Structure Of Ttha1785
Length = 487
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 26 YSSLFNGENKCKMSYLQDPGFAEVKYLHW-HGYPLKSLPSNDIEQLWDRVKRYSKLNQII 84
Y+SL N + + +P A +HW +G+P+ + + D E+ + I
Sbjct: 51 YASLQQLXNVATLPGIVEPALAXPD-IHWGYGFPIGGVAAFDPEEGGVVSPGGVGFD--I 107
Query: 85 HAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR 144
+ L + + L+PR K+L + +PSG+ + + D+ SK +
Sbjct: 108 NCGVRLLASHLTLEDLLPRQKELA------DALYRLVPSGVGS----ERRDVR-FSK-RE 155
Query: 145 LPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLD 180
L EI WL RG E IE Q RL W +
Sbjct: 156 LKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWAN 191
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 156 LFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSL---YRLKSLGILDLHGCSNLQ 212
L+L G ++ ELP+ I+ L LDLS RL SLP+ L ++LK D + +
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFD----NMVT 306
Query: 213 RLPECLGQLSSPITCNLAKTNIERIP 238
LP G L CNL +E P
Sbjct: 307 TLPWEFGNL-----CNLQFLGVEGNP 327
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 165 ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSP 224
E+PS + L+W+ LS+ + +P + RL++L IL L S +P LG S
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 225 ITCNLAKTNI--ERIPESIIQ 243
I +L TN+ IP ++ +
Sbjct: 538 IWLDL-NTNLFNGTIPAAMFK 557
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 165 ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSP 224
E+PS + L+W+ LS+ + +P + RL++L IL L S +P LG S
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 225 ITCNLAKTNI--ERIPESIIQ 243
I +L TN+ IP ++ +
Sbjct: 541 IWLDL-NTNLFNGTIPAAMFK 560
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 190 LPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVS 247
LP L++L LDL C Q P LSS N+A ++ +P+ I S
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 43/200 (21%)
Query: 12 NTFTK--MPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN--DI 67
N F++ +P L FL + + + C S D G +KYL + ++ SN +
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQS---DFGTTSLKYLDLSFNGVITMSSNFLGL 395
Query: 68 EQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFN 127
EQL ++S L Q+ + + ++ L+ L++ + + + +GIFN
Sbjct: 396 EQLEHLDFQHSNLKQMSEFS------------VFLSLRNLIYLDISHTHTRVAF-NGIFN 442
Query: 128 LEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEE--LPSSIERQLRLSWLDLSDCK 185
G S L+ L + G + +E LP L++LDLS C+
Sbjct: 443 ----------GLSSLEVLK-----------MAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 186 RLKSLPSSLYRLKSLGILDL 205
+ P++ L SL +L++
Sbjct: 482 LEQLSPTAFNSLSSLQVLNM 501
>pdb|4EZC|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZC|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus
pdb|4EZD|A Chain A, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|B Chain B, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
pdb|4EZD|C Chain C, Crystal Structure Of The Ut-B Urea Transporter From Bos
Taurus Bound To Selenourea
Length = 384
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 175 RLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQ--LSSPITC 227
++W DLS + LKSLP +G+ ++GC N LG LSSP+ C
Sbjct: 206 NVTWPDLSALQLLKSLP--------VGVGQIYGCDNPWTGGIFLGAILLSSPLMC 252
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 43/200 (21%)
Query: 12 NTFTK--MPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN--DI 67
N F++ +P L FL + + + C S D G +KYL + ++ SN +
Sbjct: 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQS---DFGTISLKYLDLSFNGVITMSSNFLGL 419
Query: 68 EQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFN 127
EQL ++S L Q+ + + ++ L+ L++ + + + +GIFN
Sbjct: 420 EQLEHLDFQHSNLKQMSEFS------------VFLSLRNLIYLDISHTHTRVAF-NGIFN 466
Query: 128 LEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEE--LPSSIERQLRLSWLDLSDCK 185
G S L+ L + G + +E LP L++LDLS C+
Sbjct: 467 ----------GLSSLEVLK-----------MAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505
Query: 186 RLKSLPSSLYRLKSLGILDL 205
+ P++ L SL +L++
Sbjct: 506 LEQLSPTAFNSLSSLQVLNM 525
>pdb|3RDW|A Chain A, Putative Arsenate Reductase From Yersinia Pestis
pdb|3RDW|B Chain B, Putative Arsenate Reductase From Yersinia Pestis
Length = 121
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 165 ELPSSIER-QLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSS 223
E P S+++ + L L SD ++L LY+ +L L LQ + + +
Sbjct: 39 ETPPSVDKLKELLQQLGFSDARQLMRTKEDLYKTLNLDDRGLTQDQLLQAMADNPKLIER 98
Query: 224 PITCNLAKTNIERIPESIIQLF 245
PI K I R PE ++++
Sbjct: 99 PIVVTQGKARIGRPPEQVLEIL 120
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 82/196 (41%), Gaps = 41/196 (20%)
Query: 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN--DIEQLW 71
F K+ +L L S+ + + C S D G +KYL + ++ SN +EQL
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQS---DFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104
Query: 72 DRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFL 131
++S L Q+ + + ++ L+ L++ + + + +GIFN
Sbjct: 105 HLDFQHSNLKQMSEFS------------VFLSLRNLIYLDISHTHTRVAF-NGIFN---- 147
Query: 132 TKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEE--LPSSIERQLRLSWLDLSDCKRLKS 189
G S L+ L + G + +E LP L++LDLS C+ +
Sbjct: 148 ------GLSSLEVLK-----------MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190
Query: 190 LPSSLYRLKSLGILDL 205
P++ L SL +L++
Sbjct: 191 SPTAFNSLSSLQVLNM 206
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 115 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGN---ISWLFLRG 160
+ LK LPSG+ L L KL LS + +L +IS+ N ++ L++RG
Sbjct: 284 ATHLKGLPSGMKGLNLLKKLVLS-VNHFDQLCQISAANFPSLTHLYIRG 331
>pdb|3PT1|A Chain A, Structure Of Duf89 From Saccharomyces Cerevisiae
Co-Crystallized With F6p
Length = 471
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 136 LSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLY 195
LS LK+ PE++ G + WLF + +RQ + D+ + + + SS Y
Sbjct: 88 LSFNEYLKKHPEVNWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFY 147
Query: 196 RLKSLGI 202
+ L +
Sbjct: 148 GVVELAL 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,521,250
Number of Sequences: 62578
Number of extensions: 298500
Number of successful extensions: 732
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 63
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)