Query 042890
Match_columns 254
No_of_seqs 137 out of 2286
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 10:40:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2E-23 4.3E-28 195.0 15.4 229 14-253 114-364 (968)
2 PLN00113 leucine-rich repeat r 99.9 4E-23 8.6E-28 193.0 15.7 234 11-253 86-340 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.3E-20 2.8E-25 177.5 18.0 248 1-253 541-877 (1153)
4 KOG4194 Membrane glycoprotein 99.9 3.9E-23 8.4E-28 172.8 0.2 195 47-253 245-447 (873)
5 KOG0444 Cytoskeletal regulator 99.8 2.6E-22 5.6E-27 169.6 -1.0 233 10-253 95-370 (1255)
6 KOG4194 Membrane glycoprotein 99.8 4.6E-21 9.9E-26 160.6 5.1 220 2-237 86-332 (873)
7 KOG0444 Cytoskeletal regulator 99.8 1.9E-21 4.1E-26 164.4 -5.2 159 67-233 211-373 (1255)
8 KOG0472 Leucine-rich repeat pr 99.7 8.1E-19 1.8E-23 141.3 -1.3 224 17-254 182-537 (565)
9 KOG0472 Leucine-rich repeat pr 99.7 1.4E-19 3.1E-24 145.6 -8.4 222 18-254 45-284 (565)
10 PLN03210 Resistant to P. syrin 99.7 2E-15 4.4E-20 142.7 16.1 102 151-253 778-901 (1153)
11 PRK15387 E3 ubiquitin-protein 99.7 1.7E-15 3.8E-20 135.2 13.2 112 130-254 343-454 (788)
12 PRK15370 E3 ubiquitin-protein 99.6 2.2E-15 4.7E-20 135.0 12.5 200 19-253 200-423 (754)
13 PRK15370 E3 ubiquitin-protein 99.6 1.8E-15 4E-20 135.5 9.9 199 4-235 201-428 (754)
14 KOG0617 Ras suppressor protein 99.6 1E-16 2.2E-21 115.5 -2.2 158 47-219 33-193 (264)
15 cd00116 LRR_RI Leucine-rich re 99.5 3.9E-16 8.5E-21 128.5 -1.3 71 16-89 21-92 (319)
16 KOG0618 Serine/threonine phosp 99.5 3.4E-16 7.3E-21 137.6 -3.1 199 47-254 241-485 (1081)
17 PRK15387 E3 ubiquitin-protein 99.5 1.5E-13 3.3E-18 123.0 12.2 123 105-241 342-465 (788)
18 KOG0617 Ras suppressor protein 99.5 4.8E-16 1E-20 112.1 -3.1 163 74-244 29-195 (264)
19 cd00116 LRR_RI Leucine-rich re 99.5 2.7E-15 5.9E-20 123.5 -1.5 234 14-253 47-315 (319)
20 KOG4237 Extracellular matrix p 99.5 6.5E-16 1.4E-20 124.4 -5.5 226 9-251 82-352 (498)
21 KOG0618 Serine/threonine phosp 99.4 2.3E-15 5E-20 132.5 -4.0 224 13-253 194-460 (1081)
22 KOG1909 Ran GTPase-activating 99.3 1.9E-13 4.1E-18 108.7 -3.3 238 13-254 25-307 (382)
23 KOG4237 Extracellular matrix p 99.2 1.4E-13 3.1E-18 111.1 -4.6 61 193-253 269-330 (498)
24 KOG1259 Nischarin, modulator o 99.2 1.9E-12 4.1E-17 101.5 1.2 137 100-239 279-416 (490)
25 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 86.9 4.5 130 100-231 14-149 (175)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 86.3 4.7 126 75-207 16-149 (175)
27 KOG0532 Leucine-rich repeat (L 99.1 2.7E-11 5.8E-16 102.3 0.1 176 49-242 77-254 (722)
28 COG4886 Leucine-rich repeat (L 99.0 4E-10 8.7E-15 95.6 6.3 174 47-237 116-292 (394)
29 COG4886 Leucine-rich repeat (L 99.0 3.4E-10 7.3E-15 96.1 5.0 181 13-215 111-294 (394)
30 KOG3207 Beta-tubulin folding c 99.0 4.6E-11 1E-15 97.9 -0.5 197 47-251 121-332 (505)
31 KOG3207 Beta-tubulin folding c 99.0 9.8E-11 2.1E-15 96.0 0.0 131 104-234 196-338 (505)
32 KOG0532 Leucine-rich repeat (L 98.9 2.8E-11 6E-16 102.2 -4.9 164 81-253 78-242 (722)
33 KOG1259 Nischarin, modulator o 98.9 5.1E-10 1.1E-14 88.1 1.3 125 124-252 279-406 (490)
34 KOG1909 Ran GTPase-activating 98.9 1.4E-10 3.1E-15 92.5 -1.9 196 11-210 85-310 (382)
35 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 64.0 4.1 59 175-233 2-60 (61)
36 PLN03150 hypothetical protein; 98.8 1.6E-08 3.5E-13 90.4 8.0 104 106-209 419-526 (623)
37 PLN03150 hypothetical protein; 98.8 1.8E-08 3.8E-13 90.1 7.8 91 153-243 420-512 (623)
38 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.4E-13 62.0 3.9 60 151-210 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.5 4.2E-08 9E-13 90.1 3.1 87 12-115 565-652 (889)
40 KOG2120 SCF ubiquitin ligase, 98.5 1.9E-09 4.1E-14 84.7 -5.0 37 172-208 336-373 (419)
41 COG5238 RNA1 Ran GTPase-activa 98.5 7.1E-09 1.5E-13 80.6 -3.1 217 14-234 26-284 (388)
42 KOG4658 Apoptotic ATPase [Sign 98.4 8.5E-08 1.8E-12 88.2 2.2 80 47-138 571-651 (889)
43 KOG0531 Protein phosphatase 1, 98.4 3E-08 6.5E-13 84.7 -0.9 105 47-166 95-201 (414)
44 KOG0531 Protein phosphatase 1, 98.4 2.3E-08 5E-13 85.4 -1.8 107 74-186 91-198 (414)
45 KOG1859 Leucine-rich repeat pr 98.3 3.9E-08 8.4E-13 86.0 -2.4 148 100-254 104-263 (1096)
46 KOG1859 Leucine-rich repeat pr 98.1 1.2E-08 2.7E-13 88.9 -9.9 16 46-61 108-123 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.1 2.4E-08 5.3E-13 78.6 -8.1 179 47-234 185-375 (419)
48 PRK15386 type III secretion pr 98.1 2.4E-05 5.2E-10 65.6 8.8 136 74-233 48-188 (426)
49 PRK15386 type III secretion pr 97.9 0.0001 2.2E-09 61.9 9.5 133 47-208 52-187 (426)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.6E-10 44.8 3.3 36 152-187 2-37 (44)
51 KOG2982 Uncharacterized conser 97.8 6.9E-06 1.5E-10 65.1 1.7 178 47-234 71-261 (418)
52 KOG4341 F-box protein containi 97.8 3E-07 6.6E-12 75.5 -6.3 89 15-115 161-252 (483)
53 KOG2982 Uncharacterized conser 97.8 1.9E-06 4.2E-11 68.1 -1.9 201 16-230 69-287 (418)
54 KOG3665 ZYG-1-like serine/thre 97.8 4.4E-06 9.6E-11 75.2 -0.2 150 47-205 122-282 (699)
55 KOG3665 ZYG-1-like serine/thre 97.8 7.1E-06 1.5E-10 73.9 0.5 130 105-235 122-263 (699)
56 PF12799 LRR_4: Leucine Rich r 97.8 4.2E-05 9.1E-10 43.1 3.5 38 199-237 2-39 (44)
57 KOG1644 U2-associated snRNP A' 97.7 9.9E-05 2.2E-09 55.4 6.0 100 106-207 43-149 (233)
58 KOG4579 Leucine-rich repeat (L 97.6 6.9E-06 1.5E-10 57.8 -1.3 86 152-239 54-140 (177)
59 KOG1644 U2-associated snRNP A' 97.5 0.00014 3E-09 54.6 4.3 124 107-234 21-152 (233)
60 KOG4579 Leucine-rich repeat (L 97.1 2.4E-05 5.1E-10 55.1 -3.1 107 105-213 27-138 (177)
61 KOG4341 F-box protein containi 97.0 5.9E-06 1.3E-10 68.1 -7.9 57 196-252 370-433 (483)
62 COG5238 RNA1 Ran GTPase-activa 97.0 8E-05 1.7E-09 58.5 -1.4 173 10-188 84-286 (388)
63 KOG2739 Leucine-rich acidic nu 97.0 0.00036 7.8E-09 54.4 2.1 41 100-140 60-102 (260)
64 KOG2739 Leucine-rich acidic nu 96.9 0.00065 1.4E-08 53.0 2.6 84 127-211 41-129 (260)
65 PF13306 LRR_5: Leucine rich r 96.6 0.019 4.1E-07 40.3 8.0 38 100-138 7-44 (129)
66 KOG2123 Uncharacterized conser 96.4 0.00011 2.3E-09 58.0 -4.7 85 17-120 18-103 (388)
67 KOG2123 Uncharacterized conser 96.1 0.00036 7.8E-09 55.1 -3.3 57 77-140 18-74 (388)
68 KOG1947 Leucine rich repeat pr 95.7 0.0013 2.9E-08 57.1 -1.9 65 75-141 240-307 (482)
69 PF13306 LRR_5: Leucine rich r 95.1 0.18 4E-06 35.2 7.9 107 9-137 3-111 (129)
70 PF00560 LRR_1: Leucine Rich R 95.0 0.013 2.8E-07 27.4 1.1 20 106-126 1-20 (22)
71 PF13504 LRR_7: Leucine rich r 95.0 0.013 2.9E-07 25.5 1.0 15 48-62 2-16 (17)
72 KOG4308 LRR-containing protein 94.7 0.00022 4.7E-09 61.8 -9.8 183 20-210 89-302 (478)
73 KOG3864 Uncharacterized conser 92.9 0.022 4.8E-07 43.0 -0.7 83 151-233 101-187 (221)
74 smart00370 LRR Leucine-rich re 92.8 0.12 2.7E-06 25.0 2.2 21 221-241 1-21 (26)
75 smart00369 LRR_TYP Leucine-ric 92.8 0.12 2.7E-06 25.0 2.2 21 221-241 1-21 (26)
76 KOG1947 Leucine rich repeat pr 92.4 0.026 5.5E-07 49.1 -1.1 15 196-210 293-307 (482)
77 KOG4308 LRR-containing protein 92.2 0.00097 2.1E-08 57.8 -9.9 184 49-235 89-303 (478)
78 KOG3864 Uncharacterized conser 92.0 0.011 2.4E-07 44.7 -3.2 83 47-138 101-185 (221)
79 PF13516 LRR_6: Leucine Rich r 83.1 0.22 4.8E-06 23.5 -0.8 17 17-33 1-17 (24)
80 KOG0473 Leucine-rich repeat pr 82.4 0.051 1.1E-06 42.2 -4.8 58 152-210 66-123 (326)
81 smart00364 LRR_BAC Leucine-ric 82.1 0.99 2.2E-05 22.0 1.3 18 222-239 2-19 (26)
82 smart00365 LRR_SD22 Leucine-ri 73.4 3.2 6.9E-05 20.2 1.6 16 222-237 2-17 (26)
83 KOG3763 mRNA export factor TAP 72.4 1.9 4.1E-05 37.9 1.2 62 103-164 216-283 (585)
84 smart00368 LRR_RI Leucine rich 70.9 1.7 3.6E-05 21.5 0.3 14 18-31 2-15 (28)
85 smart00367 LRR_CC Leucine-rich 66.0 4.5 9.9E-05 19.3 1.3 12 105-116 2-13 (26)
86 KOG0473 Leucine-rich repeat pr 63.9 0.26 5.7E-06 38.4 -5.0 80 154-235 45-124 (326)
87 KOG3763 mRNA export factor TAP 62.3 4.5 9.7E-05 35.7 1.5 33 152-184 219-254 (585)
88 KOG4242 Predicted myosin-I-bin 28.1 4.4E+02 0.0095 23.5 8.5 121 12-138 262-389 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=2e-23 Score=194.99 Aligned_cols=229 Identities=25% Similarity=0.303 Sum_probs=132.1
Q ss_pred cCCCCcceEEEeeccccCCCccC----------------cccccCCCCC-CceeeeeeCCCCCC-CCCCcchhhcchhhh
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKC----------------KMSYLQDPGF-AEVKYLHWHGYPLK-SLPSNDIEQLWDRVK 75 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~----------------~~~~~~~l~~-~~L~~L~l~~~~~~-~l~~~~l~~l~~~~~ 75 (254)
|..+++|++|++++|.+.+..+. ....+..+.. ++|++|++.+|.+. .+| ..+.
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--------~~~~ 185 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP--------NSLT 185 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC--------hhhh
Confidence 34777888888888776433211 0012222333 44444554444422 222 2255
Q ss_pred cccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCc
Q 042890 76 RYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNI 153 (254)
Q Consensus 76 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L 153 (254)
.+++|++|+++++.. .+.+|. .+..+++|++|++++|.+.+.+|..+..+++|+.|++++|...+..|... .++|
T Consensus 186 ~l~~L~~L~L~~n~l-~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 186 NLTSLEFLTLASNQL-VGQIPR--ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hCcCCCeeeccCCCC-cCcCCh--HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 566666666665442 233444 55566666666666666555566556666666666666665554444332 3556
Q ss_pred CeEeccccccc-ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCC
Q 042890 154 SWLFLRGIAIE-ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKT 232 (254)
Q Consensus 154 ~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 232 (254)
+.|++.+|.++ .+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 66666666655 45556666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCC-CCChhhhhhcccCccccc
Q 042890 233 NIE-RIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 233 ~l~-~l~~~~~~~~~L~~L~ls 253 (254)
.+. .+|..+..+++|+.|+++
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECC
Confidence 665 556666666666666654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=4e-23 Score=193.00 Aligned_cols=234 Identities=21% Similarity=0.263 Sum_probs=166.5
Q ss_pred CcccCCCCcceEEEeeccccCCCccCcccccCCCC-C-CceeeeeeCCCCCC-CCCCc-------------ch-hhcchh
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLK-SLPSN-------------DI-EQLWDR 73 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~-~l~~~-------------~l-~~l~~~ 73 (254)
+.+|..+++|++|++++|.+.+ .+|..+. . .+|++|++++|.+. .+|.. .+ ..++..
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~------~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSG------PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCC------cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH
Confidence 4568899999999999999843 3444433 3 77888888887653 23321 11 122344
Q ss_pred hhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cC
Q 042890 74 VKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SG 151 (254)
Q Consensus 74 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~ 151 (254)
+..+++|++|+++++.. ...+|. .+..+++|++|++++|.+.+.+|..+..+++|+.|++++|...+..|... .+
T Consensus 160 ~~~l~~L~~L~L~~n~l-~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVL-VGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred HhcCCCCCEEECccCcc-cccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 66677777777776542 344555 67777777777777777666677777777777777777777666665433 36
Q ss_pred CcCeEeccccccc-ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEecc
Q 042890 152 NISWLFLRGIAIE-ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLA 230 (254)
Q Consensus 152 ~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 230 (254)
+|+.|++.+|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 7778888777776 567777777788888888877777777777778888888888877777777777778888888888
Q ss_pred CCCCC-CCChhhhhhcccCccccc
Q 042890 231 KTNIE-RIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 231 ~n~l~-~l~~~~~~~~~L~~L~ls 253 (254)
+|.+. .+|..+..+++|+.|+++
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECc
Confidence 88876 667777788888888775
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.3e-20 Score=177.54 Aligned_cols=248 Identities=34% Similarity=0.561 Sum_probs=153.7
Q ss_pred CCCcceeeeCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC--CceeeeeeCCCCCCCCCCc-------------
Q 042890 1 MSKVKELRLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSLPSN------------- 65 (254)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~l~~~------------- 65 (254)
|++++++.+...+|.+|++|++|.+..+.++........+|.++.. .+|+.|++.+++++.+|..
T Consensus 541 ~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~ 620 (1153)
T PLN03210 541 IDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQG 620 (1153)
T ss_pred cCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcC
Confidence 3556777888899999999999999876543322223455666655 5688888888887777753
Q ss_pred -chhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcc
Q 042890 66 -DIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR 144 (254)
Q Consensus 66 -~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 144 (254)
.++.+|.++..+++|+.++++++.. ...+| .++.+++|+.|++.+|.....+|.++..+++|+.|++++|.....
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKN-LKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCC-cCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 4555666677778888888876554 24444 455666677777766655555665565666666666665544444
Q ss_pred ccccc-c---------------------CCcCeEecccccccccchhh------------------------------hh
Q 042890 145 LPEIS-S---------------------GNISWLFLRGIAIEELPSSI------------------------------ER 172 (254)
Q Consensus 145 ~p~~~-~---------------------~~L~~L~l~~~~~~~l~~~~------------------------------~~ 172 (254)
+|... . .+|+.|++.+|.++.+|..+ ..
T Consensus 697 Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 697 LPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred cCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhc
Confidence 33321 1 34445555555544444321 01
Q ss_pred ccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCC---------------------CCCcEEeccC
Q 042890 173 QLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQL---------------------SSPITCNLAK 231 (254)
Q Consensus 173 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l---------------------~~L~~L~l~~ 231 (254)
.++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+ .+|+.|++++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~ 855 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR 855 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence 1345566666665555566666666677777776665444444322 12 3456666666
Q ss_pred CCCCCCChhhhhhcccCccccc
Q 042890 232 TNIERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 232 n~l~~l~~~~~~~~~L~~L~ls 253 (254)
|.+..+|.++..+++|++|+++
T Consensus 856 n~i~~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 856 TGIEEVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred CCCccChHHHhcCCCCCEEECC
Confidence 6677778778888888888765
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-23 Score=172.85 Aligned_cols=195 Identities=18% Similarity=0.145 Sum_probs=147.0
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
.+|+.|.+.+|.+..+.+. ++-.+.++++|+++.+. ...+.. ..+.+++.|+.|++++|.+...-++++.
T Consensus 245 ~Sl~nlklqrN~I~kL~DG-------~Fy~l~kme~l~L~~N~--l~~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDG-------AFYGLEKMEHLNLETNR--LQAVNE-GWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred hhhhhhhhhhcCcccccCc-------ceeeecccceeecccch--hhhhhc-ccccccchhhhhccchhhhheeecchhh
Confidence 4455555555544444432 35567788888888554 333332 2667889999999999987666677788
Q ss_pred CCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccchh-hhhccccCEEeccCCcCcccCCc---cccCCCc
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPS---SLYRLKS 199 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~---~l~~l~~ 199 (254)
..++|++|+++.|++. .+++.. +..|+.|.++.|.++.+.++ +..+.+|+.||+..|.+.+-+.+ .+.+++.
T Consensus 315 ftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 8889999999986644 444443 36788899999998887765 77889999999999998875433 4778999
Q ss_pred cCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCC-ChhhhhhcccCccccc
Q 042890 200 LGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERI-PESIIQLFVSGYLLLS 253 (254)
Q Consensus 200 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~ls 253 (254)
|+.|++.||++..+...+|.+++.|++|++.+|.|..+ |.++..+ .|++|.++
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 99999999999888888999999999999999999866 4556666 88877653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=2.6e-22 Score=169.57 Aligned_cols=233 Identities=20% Similarity=0.258 Sum_probs=145.0
Q ss_pred CCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCc----------------chhhcch
Q 042890 10 NPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN----------------DIEQLWD 72 (254)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~----------------~l~~l~~ 72 (254)
.|+.+.+++.|+.|++++|.+ ...|..+.. +++-+|+|++|.++.+|.. .++.+|-
T Consensus 95 iP~diF~l~dLt~lDLShNqL-------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP 167 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQL-------REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP 167 (1255)
T ss_pred CCchhcccccceeeecchhhh-------hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence 355677899999999999987 677888888 8899999999998888865 3444454
Q ss_pred hhhcccccceehhhccC------------------------CceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCC
Q 042890 73 RVKRYSKLNQIIHAACH------------------------KLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNL 128 (254)
Q Consensus 73 ~~~~~~~L~~l~l~~~~------------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 128 (254)
...++.+|++|.+++++ .+...+|. ++..+.+|+.+|++.|. ...+|+.+-++
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt--sld~l~NL~dvDlS~N~-Lp~vPecly~l 244 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT--SLDDLHNLRDVDLSENN-LPIVPECLYKL 244 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC--chhhhhhhhhccccccC-CCcchHHHhhh
Confidence 45555555555555443 22333333 44444444444444443 23344444444
Q ss_pred CcccEEeccCCCCCcccc-ccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcc-cCCccccCCCccCEEEec
Q 042890 129 EFLTKLDLSGCSKLKRLP-EISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLK-SLPSSLYRLKSLGILDLH 206 (254)
Q Consensus 129 ~~L~~L~l~~~~~~~~~p-~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~ 206 (254)
++|+.|++++|.+..... .....+++.|.++.|.++.+|..+..+++|+.|...+|++.- .+|+.++++.+|+.+...
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 455555555544332111 111245555566666666666666666666666666665433 466667777777777666
Q ss_pred CCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCccccc
Q 042890 207 GCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 207 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls 253 (254)
+ +..+.+|+.++.|..|+.|.++.|.+-.+|+++.-++.|+.|++.
T Consensus 325 n-N~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 325 N-NKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred c-cccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence 5 344667777777777777777777777777777777777777764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.6e-21 Score=160.57 Aligned_cols=220 Identities=18% Similarity=0.153 Sum_probs=106.3
Q ss_pred CCcceeeeCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhccccc
Q 042890 2 SKVKELRLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKL 80 (254)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L 80 (254)
|+.+.-.++...|.++++|+.+++.+|++ ..+|..... .+|+.|+|.+|.+.++... .+..++.|
T Consensus 86 snNkl~~id~~~f~nl~nLq~v~l~~N~L-------t~IP~f~~~sghl~~L~L~~N~I~sv~se-------~L~~l~al 151 (873)
T KOG4194|consen 86 SNNKLSHIDFEFFYNLPNLQEVNLNKNEL-------TRIPRFGHESGHLEKLDLRHNLISSVTSE-------ELSALPAL 151 (873)
T ss_pred cccccccCcHHHHhcCCcceeeeeccchh-------hhcccccccccceeEEeeeccccccccHH-------HHHhHhhh
Confidence 33344445556677888888888888886 445554444 5577777777766665543 23344444
Q ss_pred ceehhhccCCceeecCCC-----------------------CccCCcccccEEeccCCcCCCccCCCCCCCCcccEEecc
Q 042890 81 NQIIHAACHKLIAKIPNP-----------------------TLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLS 137 (254)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~-----------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 137 (254)
+.+|++. +.+.+++.+ ..|..+.+|..|.++.|.++..-+.+|.++++|+.|++.
T Consensus 152 rslDLSr--N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 152 RSLDLSR--NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhh--chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 4444442 212333210 134444455555555554332223345556667766666
Q ss_pred CCCCCcc--ccccccCCcCeEecccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCccc
Q 042890 138 GCSKLKR--LPEISSGNISWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRL 214 (254)
Q Consensus 138 ~~~~~~~--~p~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 214 (254)
+|.+... +.-..+.+|+.|.+..|++..+..+ |..+.++++|++..|.+...-...+.+++.|+.|+++.|.+.++.
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 6542211 1111123444444444444433222 333444444444444443333333444444444444444444444
Q ss_pred CccccCCCCCcEEeccCCCCCCC
Q 042890 215 PECLGQLSSPITCNLAKTNIERI 237 (254)
Q Consensus 215 ~~~~~~l~~L~~L~l~~n~l~~l 237 (254)
++.+..++.|++|+++.|.|+++
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred cchhhhcccceeEeccccccccC
Confidence 44444444444444444444444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=1.9e-21 Score=164.40 Aligned_cols=159 Identities=22% Similarity=0.316 Sum_probs=130.9
Q ss_pred hhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccc
Q 042890 67 IEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP 146 (254)
Q Consensus 67 l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p 146 (254)
+..+|..+..+.+|..++++.+. .-.+|. .+-.+++|+.|++++|.++ .+.-....+.+|+.|++++|. ...+|
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~--Lp~vPe--cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ-Lt~LP 284 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENN--LPIVPE--CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ-LTVLP 284 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccC--CCcchH--HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch-hccch
Confidence 44445667788889999998544 556676 8888999999999999954 444446678899999999965 56677
Q ss_pred ccc--cCCcCeEeccccccc--ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCC
Q 042890 147 EIS--SGNISWLFLRGIAIE--ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLS 222 (254)
Q Consensus 147 ~~~--~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 222 (254)
... ++.|+.|++.+|+++ .+|.+++.+.+|+.+..++|+ ..-+|..+..|..|+.|.++.|.+. .+|+++--++
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 654 478889999999877 899999999999999999887 6678889999999999999987664 4788877789
Q ss_pred CCcEEeccCCC
Q 042890 223 SPITCNLAKTN 233 (254)
Q Consensus 223 ~L~~L~l~~n~ 233 (254)
.|+.|++..|+
T Consensus 363 ~l~vLDlreNp 373 (1255)
T KOG0444|consen 363 DLKVLDLRENP 373 (1255)
T ss_pred CcceeeccCCc
Confidence 99999999987
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=8.1e-19 Score=141.29 Aligned_cols=224 Identities=23% Similarity=0.279 Sum_probs=134.2
Q ss_pred CCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCc--------------chhhcch-hhhccccc
Q 042890 17 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN--------------DIEQLWD-RVKRYSKL 80 (254)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~--------------~l~~l~~-~~~~~~~L 80 (254)
|+.|+.|+...|.+ ..+|..+.. .+|.-|++..|.+..+|.+ .++.+++ ..+.++.+
T Consensus 182 m~~L~~ld~~~N~L-------~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLL-------ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSL 254 (565)
T ss_pred HHHHHhcccchhhh-------hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccc
Confidence 55555555555544 344555555 5566666666655555544 3333332 34467777
Q ss_pred ceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCC-------------------
Q 042890 81 NQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK------------------- 141 (254)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------------------- 141 (254)
..+|++++. ..++|. .+..+++|.+||+++|. +..+|.+++++ +|++|-+.+|..
T Consensus 255 ~vLDLRdNk--lke~Pd--e~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 255 LVLDLRDNK--LKEVPD--EICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL 328 (565)
T ss_pred eeeeccccc--cccCch--HHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence 777777554 667776 77777778888888776 34566667776 677666655420
Q ss_pred ---------------------------------------------Ccccccccc--C---CcCeEeccccccccc-----
Q 042890 142 ---------------------------------------------LKRLPEISS--G---NISWLFLRGIAIEEL----- 166 (254)
Q Consensus 142 ---------------------------------------------~~~~p~~~~--~---~L~~L~l~~~~~~~l----- 166 (254)
.+.+|...+ . -+..+++++|.+.++
T Consensus 329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence 000111000 0 022334444433333
Q ss_pred -------------------chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCC-----------------
Q 042890 167 -------------------PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSN----------------- 210 (254)
Q Consensus 167 -------------------~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~----------------- 210 (254)
|..+..+++|..|++++|- ..++|..++.+-.|+.++++.|.+
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtll 487 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLL 487 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHH
Confidence 3334556667777776653 445666666666677777766543
Q ss_pred ------CcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 211 ------LQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 211 ------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
....++.+..+.+|..||+.+|.+..+|+.+++|.+|+.|++++
T Consensus 488 as~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 488 ASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred hccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecC
Confidence 12233346778889999999999999999999999999988864
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.4e-19 Score=145.62 Aligned_cols=222 Identities=22% Similarity=0.233 Sum_probs=153.9
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCc---------------chhhcchhhhcccccc
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN---------------DIEQLWDRVKRYSKLN 81 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~---------------~l~~l~~~~~~~~~L~ 81 (254)
..++.|.++.|.+ .++.+.+.. ..|.++++.+|.+..+|+. .+..+|+++.+..++.
T Consensus 45 v~l~~lils~N~l-------~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDL-------EVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCch-------hhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 3455555555554 333344444 5556666665555555543 2333445577777777
Q ss_pred eehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc-cCCcCeEeccc
Q 042890 82 QIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRG 160 (254)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~ 160 (254)
.++++.++ ..++++ .++.+..+..++..+|. +...|+.+..+.++..+++.+|......|... .+.++.++...
T Consensus 118 ~l~~s~n~--~~el~~--~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 118 KLDCSSNE--LKELPD--SIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhccccc--eeecCc--hHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 77777544 566666 77777788888877777 34556667777778888887766433323222 47788888888
Q ss_pred ccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCcccc-CCCCCcEEeccCCCCCCCCh
Q 042890 161 IAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLG-QLSSPITCNLAKTNIERIPE 239 (254)
Q Consensus 161 ~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~l~~ 239 (254)
|-++.+|+.++.+.+|..|++..|++ ...| +|.+++.|++++++.|.+ +.+|.+.+ +++++..||+.+|+++++|.
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccccccCch
Confidence 88888898888888888888888874 4455 688888888888877544 45555544 78888999999999999998
Q ss_pred hhhhhcccCcccccC
Q 042890 240 SIIQLFVSGYLLLSY 254 (254)
Q Consensus 240 ~~~~~~~L~~L~ls~ 254 (254)
.+..+++|.+||+|+
T Consensus 270 e~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 270 EICLLRSLERLDLSN 284 (565)
T ss_pred HHHHhhhhhhhcccC
Confidence 888888898888874
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=2e-15 Score=142.72 Aligned_cols=102 Identities=32% Similarity=0.541 Sum_probs=71.8
Q ss_pred CCcCeEeccccc-ccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCC------------------
Q 042890 151 GNISWLFLRGIA-IEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNL------------------ 211 (254)
Q Consensus 151 ~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~------------------ 211 (254)
++|+.|++++|. +..+|..++++++|+.|++++|.....+|..+ .+++|+.|++++|...
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 356777777764 44688888888888888888887666666543 4556666666655332
Q ss_pred --cccCccccCCCCCcEEeccCCC-CCCCChhhhhhcccCccccc
Q 042890 212 --QRLPECLGQLSSPITCNLAKTN-IERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 212 --~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~ls 253 (254)
..+|.++..+++|+.|++.+|. +..+|..+..+++|+.++++
T Consensus 857 ~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 857 GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 2356667778999999999854 66777777777777777665
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1.7e-15 Score=135.20 Aligned_cols=112 Identities=23% Similarity=0.244 Sum_probs=71.2
Q ss_pred cccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCC
Q 042890 130 FLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCS 209 (254)
Q Consensus 130 ~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (254)
+|+.|++++|++. .+|... .+++.|++++|.++.+|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp-~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~ 413 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNR 413 (788)
T ss_pred ccceEecCCCccC-CCCCCC-cccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCc
Confidence 5666666665433 344333 4566666666666655543 2467777777776553 4432 3567778888776
Q ss_pred CCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 210 NLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 210 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
+.+ +|.. ..+|+.|++++|.++.+|..+..+++|+.+++++
T Consensus 414 Lss-IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 414 LTS-LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred CCC-CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCC
Confidence 543 5542 3467778888888888888888888888888764
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.64 E-value=2.2e-15 Score=135.03 Aligned_cols=200 Identities=23% Similarity=0.291 Sum_probs=96.3
Q ss_pred cceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCC
Q 042890 19 KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNP 98 (254)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 98 (254)
+|+.|++++|.+ ..+|..+. .+|++|++.+|.++.+|.. + ...|+.|++++|. ...+|.
T Consensus 200 ~L~~L~Ls~N~L-------tsLP~~l~-~nL~~L~Ls~N~LtsLP~~--------l--~~~L~~L~Ls~N~--L~~LP~- 258 (754)
T PRK15370 200 QITTLILDNNEL-------KSLPENLQ-GNIKTLYANSNQLTSIPAT--------L--PDTIQEMELSINR--ITELPE- 258 (754)
T ss_pred CCcEEEecCCCC-------CcCChhhc-cCCCEEECCCCccccCChh--------h--hccccEEECcCCc--cCcCCh-
Confidence 577888888776 23333221 5677777777777666642 1 1245555555443 223332
Q ss_pred CccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCc--------------------cccccccCCcCeEec
Q 042890 99 TLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--------------------RLPEISSGNISWLFL 158 (254)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------------------~~p~~~~~~L~~L~l 158 (254)
.+. ..|+.|++++|.+. .+|..+. ++|+.|++++|++.. .+|.....+|+.|++
T Consensus 259 -~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~L 332 (754)
T PRK15370 259 -RLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEA 332 (754)
T ss_pred -hHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccc
Confidence 221 34555555555432 3343322 245555555543321 222222244555555
Q ss_pred ccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCC
Q 042890 159 RGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIP 238 (254)
Q Consensus 159 ~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 238 (254)
.+|.++.+|..+. ++|+.|++++|.+. .+|..+ .+.|+.|++++|++. .+|..+. ..|+.|++++|.+..+|
T Consensus 333 s~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 333 GENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLP 404 (754)
T ss_pred cCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCc
Confidence 5555555544332 45555555555543 233322 235555666555443 2333322 24555666666665555
Q ss_pred hhhhhh----cccCccccc
Q 042890 239 ESIIQL----FVSGYLLLS 253 (254)
Q Consensus 239 ~~~~~~----~~L~~L~ls 253 (254)
..+..+ +++..+++.
T Consensus 405 ~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred hhHHHHhhcCCCccEEEee
Confidence 443332 444555443
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=1.8e-15 Score=135.49 Aligned_cols=199 Identities=20% Similarity=0.240 Sum_probs=126.3
Q ss_pred cceeeeCCcccCCC-----CcceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhccc
Q 042890 4 VKELRLNPNTFTKM-----PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYS 78 (254)
Q Consensus 4 ~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~ 78 (254)
+..+++....+..+ ++|++|++++|.+. .+|..+. .+|+.|++++|.+..+|.. + ..
T Consensus 201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-------sLP~~l~-~~L~~L~Ls~N~L~~LP~~--------l--~s 262 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLT-------SIPATLP-DTIQEMELSINRITELPER--------L--PS 262 (754)
T ss_pred CcEEEecCCCCCcCChhhccCCCEEECCCCccc-------cCChhhh-ccccEEECcCCccCcCChh--------H--hC
Confidence 33444444444433 37889999888872 2333221 4677777777776666543 1 13
Q ss_pred ccceehhhccCCceeecCCCCccCCcccccEEeccCCcCC--------------------CccCCCCCCCCcccEEeccC
Q 042890 79 KLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSL--------------------KSLPSGIFNLEFLTKLDLSG 138 (254)
Q Consensus 79 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~~~~~l~~L~~L~l~~ 138 (254)
+|+.|+++++. ...+|. .+. +.|+.|++++|.+. ..+|..+ .++|+.|++++
T Consensus 263 ~L~~L~Ls~N~--L~~LP~--~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~ 334 (754)
T PRK15370 263 ALQSLDLFHNK--ISCLPE--NLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGLKTLEAGE 334 (754)
T ss_pred CCCEEECcCCc--cCcccc--ccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccc--cccceeccccC
Confidence 45555555332 223332 221 24555555554432 1233222 35799999999
Q ss_pred CCCCccccccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCcc-
Q 042890 139 CSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPEC- 217 (254)
Q Consensus 139 ~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~- 217 (254)
|.+.. +|.....+|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+. ..|+.|++++|++. .+|..
T Consensus 335 N~Lt~-LP~~l~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 335 NALTS-LPASLPPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred Ccccc-CChhhcCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence 87554 665545799999999999999987653 68999999999866 4555443 36899999998775 44543
Q ss_pred ---ccCCCCCcEEeccCCCCC
Q 042890 218 ---LGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 218 ---~~~l~~L~~L~l~~n~l~ 235 (254)
...++.+..+++.+|++.
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHhhcCCCccEEEeeCCCcc
Confidence 344688999999999986
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=1e-16 Score=115.52 Aligned_cols=158 Identities=26% Similarity=0.343 Sum_probs=114.0
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
..+..|-++.|.++.+|+. +..+.+|+.+++.++. +.++|. .++.++.|+.|++.-|+ ...+|..|+
T Consensus 33 s~ITrLtLSHNKl~~vppn--------ia~l~nlevln~~nnq--ie~lp~--~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPN--------IAELKNLEVLNLSNNQ--IEELPT--SISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred hhhhhhhcccCceeecCCc--------HHHhhhhhhhhcccch--hhhcCh--hhhhchhhhheecchhh-hhcCccccC
Confidence 5566666777776666665 5667777777777444 666766 77777888888877776 456677788
Q ss_pred CCCcccEEeccCCCCCccc-cccc--cCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEE
Q 042890 127 NLEFLTKLDLSGCSKLKRL-PEIS--SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGIL 203 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~-p~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 203 (254)
.+|-|+.||++.|+..... |..+ ...++.|+++.|.++.+|+.++.+++|+.|.+.+|.+. ..|..++.+.+|+.|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 8888888888877766543 3322 25677778888888888998999999999999888744 467778888889999
Q ss_pred EecCCCCCcccCcccc
Q 042890 204 DLHGCSNLQRLPECLG 219 (254)
Q Consensus 204 ~l~~~~~~~~~~~~~~ 219 (254)
++++|.+ ..+|.+++
T Consensus 179 hiqgnrl-~vlppel~ 193 (264)
T KOG0617|consen 179 HIQGNRL-TVLPPELA 193 (264)
T ss_pred hccccee-eecChhhh
Confidence 9988655 44554444
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=3.9e-16 Score=128.50 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=30.6
Q ss_pred CCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccC
Q 042890 16 KMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACH 89 (254)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~ 89 (254)
.+++|+.|+++++.+..... ..++..+.. +.++.+++.++.+...+ ..+..++.++..+++|+.|+++++.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~--~~i~~~l~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAA--KALASALRPQPSLKELCLSLNETGRIP-RGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHhhccEEeecCCCCcHHHH--HHHHHHHhhCCCceEEeccccccCCcc-hHHHHHHHHHHhcCceeEEEccCCC
Confidence 34456666666655532211 122222333 44555555555433211 1222333334445555555555443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.53 E-value=3.4e-16 Score=137.61 Aligned_cols=199 Identities=26% Similarity=0.316 Sum_probs=109.9
Q ss_pred CceeeeeeCCCCCCCCCCc---------------chhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEe
Q 042890 47 AEVKYLHWHGYPLKSLPSN---------------DIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILN 111 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~---------------~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 111 (254)
.+|++++++.+.+..+|.+ .+..++..+...++|+.+.+..+. ...+|. .....+.|++|+
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne--l~yip~--~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE--LEYIPP--FLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh--hhhCCC--cccccceeeeee
Confidence 6677777777666666643 112222334445555555555444 556665 555677777777
Q ss_pred ccCCcCCCccCCCCC--------------------------CCCcccEEeccCCCCCccc-cccc-cCCcCeEecccccc
Q 042890 112 LRGSKSLKSLPSGIF--------------------------NLEFLTKLDLSGCSKLKRL-PEIS-SGNISWLFLRGIAI 163 (254)
Q Consensus 112 l~~~~~~~~~~~~~~--------------------------~l~~L~~L~l~~~~~~~~~-p~~~-~~~L~~L~l~~~~~ 163 (254)
+..|.+ ..+|+.+. .++.|+.|++.+|.+.... |... +..|+.|++++|.+
T Consensus 317 L~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 777763 33332110 1223444555554444332 2211 36677777777777
Q ss_pred cccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCC--CChh
Q 042890 164 EELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIER--IPES 240 (254)
Q Consensus 164 ~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~ 240 (254)
+.+|.. +.++..|+.|++++|++ ..+|.++..+..|++|...+|++ ..+| .+..++.|+.+|++.|.++. +|..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 777654 55666677777777763 33445555566666665555433 3355 45566777777777777652 3332
Q ss_pred hhhhcccCcccccC
Q 042890 241 IIQLFVSGYLLLSY 254 (254)
Q Consensus 241 ~~~~~~L~~L~ls~ 254 (254)
. ..++|++||+++
T Consensus 473 ~-p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 473 L-PSPNLKYLDLSG 485 (1081)
T ss_pred C-CCcccceeeccC
Confidence 2 226777777664
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.5e-13 Score=122.96 Aligned_cols=123 Identities=27% Similarity=0.245 Sum_probs=94.6
Q ss_pred ccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEeccCC
Q 042890 105 KKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDC 184 (254)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n 184 (254)
..|+.|++++|.+. .+|.. .++|+.|++++|.+. .+|... .+|+.|++++|.++.+|.. .++|+.|++++|
T Consensus 342 ~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l~-~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N 412 (788)
T PRK15387 342 SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPALP-SGLKELIVSGNRLTSLPVL---PSELKELMVSGN 412 (788)
T ss_pred cccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCcccc-cccceEEecCCcccCCCCc---ccCCCEEEccCC
Confidence 37899999998854 45542 356888899987654 566654 7899999999999988864 367999999999
Q ss_pred cCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhh
Q 042890 185 KRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESI 241 (254)
Q Consensus 185 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~ 241 (254)
.+.. +|.. ...|+.|++++|++. .+|..++.+++|+.+++++|++. ..+..+
T Consensus 413 ~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 413 RLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 8654 5643 346788999997765 67888889999999999999987 334434
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=4.8e-16 Score=112.05 Aligned_cols=163 Identities=23% Similarity=0.321 Sum_probs=131.6
Q ss_pred hhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cC
Q 042890 74 VKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SG 151 (254)
Q Consensus 74 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~ 151 (254)
+-.+.+++.|.++.+. ...+|. .++.+.+|+.|++.+|+ +..+|.++..+++|+.|+++.|. ...+|..+ ++
T Consensus 29 Lf~~s~ITrLtLSHNK--l~~vpp--nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK--LTVVPP--NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCc--eeecCC--cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence 4456677777888544 566666 88899999999999998 57788889999999999998855 45566554 57
Q ss_pred CcCeEeccccccc--ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEec
Q 042890 152 NISWLFLRGIAIE--ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNL 229 (254)
Q Consensus 152 ~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 229 (254)
.++.|++.+|++. .+|..|..++.|+.|.+++|.+ ..+|..++++++|+.|.+..|.+. .+|.+++.+..|++|++
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhc
Confidence 8899999999887 6899999999999999999874 446667899999999999887654 47788888999999999
Q ss_pred cCCCCCCCChhhhhh
Q 042890 230 AKTNIERIPESIIQL 244 (254)
Q Consensus 230 ~~n~l~~l~~~~~~~ 244 (254)
++|.++-+|..++++
T Consensus 181 qgnrl~vlppel~~l 195 (264)
T KOG0617|consen 181 QGNRLTVLPPELANL 195 (264)
T ss_pred ccceeeecChhhhhh
Confidence 999998888776644
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=2.7e-15 Score=123.49 Aligned_cols=234 Identities=18% Similarity=0.086 Sum_probs=153.1
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
+...+.+++|+++++.+++........+..+.. ++|+.|++++|.+.......+.. .... ++|++|+++++....
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---l~~~-~~L~~L~ls~~~~~~ 122 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES---LLRS-SSLQELKLNNNGLGD 122 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH---Hhcc-CcccEEEeeCCccch
Confidence 446677999999998874210001122333444 89999999999865322211111 1222 569999999776421
Q ss_pred ---eecCCCCccCCc-ccccEEeccCCcCCC----ccCCCCCCCCcccEEeccCCCCCcc----ccccc--cCCcCeEec
Q 042890 93 ---AKIPNPTLMPRM-KKLVILNLRGSKSLK----SLPSGIFNLEFLTKLDLSGCSKLKR----LPEIS--SGNISWLFL 158 (254)
Q Consensus 93 ---~~~~~~~~~~~~-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~p~~~--~~~L~~L~l 158 (254)
..+.. .+..+ +.|+.|++++|.+.+ .++..+..+++|+.|++++|.+... ++... .+.|+.|++
T Consensus 123 ~~~~~l~~--~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L 200 (319)
T cd00116 123 RGLRLLAK--GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200 (319)
T ss_pred HHHHHHHH--HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEec
Confidence 12222 44556 899999999998763 2333455678899999999876632 11111 258999999
Q ss_pred cccccc-----ccchhhhhccccCEEeccCCcCcccCCcccc-----CCCccCEEEecCCCCCc----ccCccccCCCCC
Q 042890 159 RGIAIE-----ELPSSIERQLRLSWLDLSDCKRLKSLPSSLY-----RLKSLGILDLHGCSNLQ----RLPECLGQLSSP 224 (254)
Q Consensus 159 ~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L 224 (254)
++|.++ .++..+..+++|++|++++|.+.+.....+. ..+.|+.+++++|.+.. .+...+..++.|
T Consensus 201 ~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L 280 (319)
T cd00116 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL 280 (319)
T ss_pred cCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCc
Confidence 999886 2444566778999999999987752222221 24789999999987752 233445566899
Q ss_pred cEEeccCCCCCCC-----Chhhhhh-cccCccccc
Q 042890 225 ITCNLAKTNIERI-----PESIIQL-FVSGYLLLS 253 (254)
Q Consensus 225 ~~L~l~~n~l~~l-----~~~~~~~-~~L~~L~ls 253 (254)
+.+++++|.+..- ...+... +.|+++++.
T Consensus 281 ~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 281 LELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred cEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 9999999998632 3334444 678888775
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=6.5e-16 Score=124.35 Aligned_cols=226 Identities=20% Similarity=0.176 Sum_probs=119.5
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCC-CCCCCCCCcchhhcchhhhcccccceehhh
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLKSLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~-~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
+.+.+|+.+++||.|++++|.| ...-|..+.. .+|-.|.+.+ |.++++|.. .+..+..++-|.+.
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~I------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~-------~F~gL~slqrLllN 148 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNI------SFIAPDAFKGLASLLSLVLYGNNKITDLPKG-------AFGGLSSLQRLLLN 148 (498)
T ss_pred CChhhccchhhhceecccccch------hhcChHhhhhhHhhhHHHhhcCCchhhhhhh-------HhhhHHHHHHHhcC
Confidence 4566888999999999999987 3444555666 7777777666 678888865 35556666666665
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCC-CCCCCCcccEEeccCCCCCcc--cccc-------------c-
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKR--LPEI-------------S- 149 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~--~p~~-------------~- 149 (254)
.++ ...++. ..|..++++..|++.+|.+. .++. .+..+..++.+.+..|.+... +|+. +
T Consensus 149 an~--i~Cir~-~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 149 ANH--INCIRQ-DALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hhh--hcchhH-HHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 443 333331 26666777777777777632 2322 444555555555444332111 0000 0
Q ss_pred --------------------cCCcCeE---eccccccc-ccch-hhhhccccCEEeccCCcCcccCCccccCCCccCEEE
Q 042890 150 --------------------SGNISWL---FLRGIAIE-ELPS-SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILD 204 (254)
Q Consensus 150 --------------------~~~L~~L---~l~~~~~~-~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 204 (254)
..+++.+ ....+... ..|. .|+.+++|++|++++|++...-+.+|.+.+.++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 0000000 00001011 1122 245556666666666665554444555555666666
Q ss_pred ecCCCCCcccCccccCCCCCcEEeccCCCCCCC-ChhhhhhcccCccc
Q 042890 205 LHGCSNLQRLPECLGQLSSPITCNLAKTNIERI-PESIIQLFVSGYLL 251 (254)
Q Consensus 205 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~ 251 (254)
+..|++...-...|..+..|+.|++.+|+|+.+ |..+....+|.+|+
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 655555444444455555666666666665532 33444444444443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=2.3e-15 Score=132.45 Aligned_cols=224 Identities=20% Similarity=0.222 Sum_probs=137.6
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCc--------------chhhcchhhhccc
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN--------------DIEQLWDRVKRYS 78 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~--------------~l~~l~~~~~~~~ 78 (254)
.+..+.+|+.+....+.+ ..+ .+..++|+.|+...|++..+... .+..+|..+..+.
T Consensus 194 dls~~~~l~~l~c~rn~l-------s~l--~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~ 264 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQL-------SEL--EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACA 264 (1081)
T ss_pred hhhhccchhhhhhhhccc-------ceE--EecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcc
Confidence 355677778887777765 100 12238899999999986533222 4555566677777
Q ss_pred ccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---------
Q 042890 79 KLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--------- 149 (254)
Q Consensus 79 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--------- 149 (254)
+|+.+....+. ...+|. .+....+|+.|+...|. ...+|+...++..|+.|++..|++ ..+|+..
T Consensus 265 nle~l~~n~N~--l~~lp~--ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 265 NLEALNANHNR--LVALPL--RISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLN 338 (1081)
T ss_pred cceEecccchh--HHhhHH--HHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHH
Confidence 77777777444 456665 66677788888888877 456677677788899999988653 3333211
Q ss_pred -------------------cCCcCeEeccccccc-ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCC
Q 042890 150 -------------------SGNISWLFLRGIAIE-ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCS 209 (254)
Q Consensus 150 -------------------~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (254)
...|+.|++.+|.++ ..-+.+.++.+|+.|++++|.+.......+.++..|+.|+++||.
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence 123445555555555 222334455666666666665444333345566666666666643
Q ss_pred CCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCccccc
Q 042890 210 NLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 210 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls 253 (254)
+ ..+|..+..+..|+.|...+|.+..+| .+.+++.|+.+|+|
T Consensus 419 L-~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 419 L-TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred h-hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence 3 344555556666666666666666666 46666777776665
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=1.9e-13 Score=108.67 Aligned_cols=238 Identities=16% Similarity=0.077 Sum_probs=166.9
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCc---chhhcchhhhcccccceehhhcc
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN---DIEQLWDRVKRYSKLNQIIHAAC 88 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~---~l~~l~~~~~~~~~L~~l~l~~~ 88 (254)
.+..+..++.+++++|.|+.+- ...+...+.. ++|+..++++-....+-+. .+.-+..++..+++|+++++|++
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EA--a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEA--ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HhcccCceEEEeccCCchhHHH--HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4567889999999999995552 2455666777 8999999988654433222 44455567788899999999965
Q ss_pred CCc---eeecCCCCccCCcccccEEeccCCcCCCc-------------cCCCCCCCCcccEEeccCCCCCccccc----c
Q 042890 89 HKL---IAKIPNPTLMPRMKKLVILNLRGSKSLKS-------------LPSGIFNLEFLTKLDLSGCSKLKRLPE----I 148 (254)
Q Consensus 89 ~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~~p~----~ 148 (254)
-.- ...+-. .++.+..|++|++.+|++... ...-...-++|+.+..++|.....-.. .
T Consensus 103 A~G~~g~~~l~~--ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 103 AFGPKGIRGLEE--LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccCccchHHHHH--HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 421 112222 456688999999999985311 111234557899999999764433211 1
Q ss_pred --ccCCcCeEeccccccc-----ccchhhhhccccCEEeccCCcCccc----CCccccCCCccCEEEecCCCCCcc----
Q 042890 149 --SSGNISWLFLRGIAIE-----ELPSSIERQLRLSWLDLSDCKRLKS----LPSSLYRLKSLGILDLHGCSNLQR---- 213 (254)
Q Consensus 149 --~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~---- 213 (254)
..+.++.+.+..|.|. .+...+.++++|+.||+.+|.+... +...+..+++|+.+++++|.+...
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 1268889999998776 2345688899999999999988652 344567789999999999988653
Q ss_pred cCccc-cCCCCCcEEeccCCCCC-----CCChhhhhhcccCcccccC
Q 042890 214 LPECL-GQLSSPITCNLAKTNIE-----RIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 214 ~~~~~-~~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~ls~ 254 (254)
+..++ ...|+|+++.+.+|.++ .+...+...|.|.+|++++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 22333 24789999999999985 2334456678888888874
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=1.4e-13 Score=111.06 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=52.2
Q ss_pred cccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh-hhhhhcccCccccc
Q 042890 193 SLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE-SIIQLFVSGYLLLS 253 (254)
Q Consensus 193 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~ls 253 (254)
.|.++++|+++++++|.+.++-+.+|....++++|.+.+|++..+.. .+..+..|++|++.
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 47789999999999999988888899999999999999999987654 35678888888875
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=1.9e-12 Score=101.51 Aligned_cols=137 Identities=20% Similarity=0.105 Sum_probs=108.3
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEE
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWL 179 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 179 (254)
.+..++.|+++|+++|. +..+.+++.-.|+++.|++++|.+...-.-..+.+|+.|++++|.++.+..+-..+.|+++|
T Consensus 279 ~~dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred ecchHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 44567899999999997 45566667778999999999987554333333589999999999999888887788899999
Q ss_pred eccCCcCcccCCccccCCCccCEEEecCCCCCcc-cCccccCCCCCcEEeccCCCCCCCCh
Q 042890 180 DLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQR-LPECLGQLSSPITCNLAKTNIERIPE 239 (254)
Q Consensus 180 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~l~~ 239 (254)
.+++|.+.+ . +.++++-+|..||+.+|++... -...++++|.|+.+.+.+|++..+++
T Consensus 358 ~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 999987543 2 3467788899999999887542 23567889999999999999876654
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1e-10 Score=86.92 Aligned_cols=130 Identities=23% Similarity=0.142 Sum_probs=47.9
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCC-CCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhh-hhccccC
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSI-ERQLRLS 177 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~ 177 (254)
.+.+...+++|++.+|.+. .+. .++ .+.+|+.|++++|.+...-.-..+..|+.|++++|.++.+.+.+ ..+++|+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 4556678899999999853 333 354 57889999999977554322222578888889999888887655 4578888
Q ss_pred EEeccCCcCcc-cCCccccCCCccCEEEecCCCCCcccC---ccccCCCCCcEEeccC
Q 042890 178 WLDLSDCKRLK-SLPSSLYRLKSLGILDLHGCSNLQRLP---ECLGQLSSPITCNLAK 231 (254)
Q Consensus 178 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~ 231 (254)
.|++++|++.+ .-...+..+++|+.|++.+|++.+.-- ..+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 89988888755 222346678888888888877654311 1245678888887544
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.3e-10 Score=86.31 Aligned_cols=126 Identities=23% Similarity=0.262 Sum_probs=45.2
Q ss_pred hcccccceehhhccCCceeecCCCCccC-CcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc--ccC
Q 042890 75 KRYSKLNQIIHAACHKLIAKIPNPTLMP-RMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSG 151 (254)
Q Consensus 75 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~ 151 (254)
.+..++++|+++++. +..+. .++ .+.+|+.|++++|.+ ..+.. +..+++|+.|++++|.+....+.. .++
T Consensus 16 ~n~~~~~~L~L~~n~--I~~Ie---~L~~~l~~L~~L~Ls~N~I-~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ--ISTIE---NLGATLDKLEVLDLSNNQI-TKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS---S-CHHHHHH-T
T ss_pred ccccccccccccccc--ccccc---chhhhhcCCCEEECCCCCC-ccccC-ccChhhhhhcccCCCCCCccccchHHhCC
Confidence 455577888888665 33332 343 467888888888874 34443 677888888888887765532221 247
Q ss_pred CcCeEecccccccccc--hhhhhccccCEEeccCCcCcccCC---ccccCCCccCEEEecC
Q 042890 152 NISWLFLRGIAIEELP--SSIERQLRLSWLDLSDCKRLKSLP---SSLYRLKSLGILDLHG 207 (254)
Q Consensus 152 ~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~ 207 (254)
+|+.|++++|.|..+. ..+..+++|+.|++.+|.++..-. ..+..+|+|+.||-..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8888888888877543 345677888888888887765311 1255678888887654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=2.7e-11 Score=102.32 Aligned_cols=176 Identities=23% Similarity=0.317 Sum_probs=114.0
Q ss_pred eeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCC
Q 042890 49 VKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNL 128 (254)
Q Consensus 49 L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 128 (254)
-...+++.|.+..+|.. +..|.-|+.+.+..+. ...+|. .+..+..|+.|+++.|+ ...+|..+..+
T Consensus 77 t~~aDlsrNR~~elp~~--------~~~f~~Le~liLy~n~--~r~ip~--~i~~L~~lt~l~ls~Nq-lS~lp~~lC~l 143 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEE--------ACAFVSLESLILYHNC--IRTIPE--AICNLEALTFLDLSSNQ-LSHLPDGLCDL 143 (722)
T ss_pred hhhhhccccccccCchH--------HHHHHHHHHHHHHhcc--ceecch--hhhhhhHHHHhhhccch-hhcCChhhhcC
Confidence 34455666655555543 5566666666665333 455665 77777777777777776 45566666666
Q ss_pred CcccEEeccCCCCCccccccc--cCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEec
Q 042890 129 EFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLH 206 (254)
Q Consensus 129 ~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 206 (254)
+ |+.|.+++|+ .+.+|... ...+..++.+.|.+..+|..+.++.+|+.|.+..|... .+|..+..++ |..||++
T Consensus 144 p-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfS 219 (722)
T KOG0532|consen 144 P-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFS 219 (722)
T ss_pred c-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecc
Confidence 6 7777777755 33344333 25566777777777777777777777777777776633 3445555444 6777877
Q ss_pred CCCCCcccCccccCCCCCcEEeccCCCCCCCChhhh
Q 042890 207 GCSNLQRLPECLGQLSSPITCNLAKTNIERIPESII 242 (254)
Q Consensus 207 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~ 242 (254)
.| ....+|-.|++|..|++|-+.+|+++.-|..+.
T Consensus 220 cN-kis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 220 CN-KISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred cC-ceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 64 445677778888888888888888776665544
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=4e-10 Score=95.65 Aligned_cols=174 Identities=26% Similarity=0.299 Sum_probs=110.7
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhccc-ccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYS-KLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGI 125 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 125 (254)
+.+..|++.++.+..+++. ..... +|+.++++++. ...++. .+..++.|+.|++++|. +..++...
T Consensus 116 ~~l~~L~l~~n~i~~i~~~--------~~~~~~nL~~L~l~~N~--i~~l~~--~~~~l~~L~~L~l~~N~-l~~l~~~~ 182 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL--------IGLLKSNLKELDLSDNK--IESLPS--PLRNLPNLKNLDLSFND-LSDLPKLL 182 (394)
T ss_pred cceeEEecCCcccccCccc--------cccchhhcccccccccc--hhhhhh--hhhccccccccccCCch-hhhhhhhh
Confidence 5677777777777777654 33342 77777777554 445443 56677777777777777 34455534
Q ss_pred CCCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEE
Q 042890 126 FNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGIL 203 (254)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 203 (254)
...+.|+.|++++|+ ...+|.. ....++.+.+++|.+...+..+....++..+.+..|++... +..++.++.++.+
T Consensus 183 ~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L 260 (394)
T COG4886 183 SNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETL 260 (394)
T ss_pred hhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhcccccccee
Confidence 466777777777755 3344443 22447777777776666666666667777777666654332 3456677777888
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCCCC
Q 042890 204 DLHGCSNLQRLPECLGQLSSPITCNLAKTNIERI 237 (254)
Q Consensus 204 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 237 (254)
++++|.+..... +.....++.++++++.+...
T Consensus 261 ~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 261 DLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccccccccc--ccccCccCEEeccCcccccc
Confidence 887766554333 56677778888877766533
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3.4e-10 Score=96.09 Aligned_cols=181 Identities=29% Similarity=0.344 Sum_probs=137.9
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-C-ceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCC
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-A-EVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHK 90 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~-~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~ 90 (254)
.+...+.++.|++.++.+ ..++..... . +|+.|++.+|.+..++.. +..+++|+.|+++++.
T Consensus 111 ~~~~~~~l~~L~l~~n~i-------~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~--------~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 111 ELLELTNLTSLDLDNNNI-------TDIPPLIGLLKSNLKELDLSDNKIESLPSP--------LRNLPNLKNLDLSFND- 174 (394)
T ss_pred hhhcccceeEEecCCccc-------ccCccccccchhhcccccccccchhhhhhh--------hhccccccccccCCch-
Confidence 445567899999999887 555555555 4 899999999998888633 7889999999999776
Q ss_pred ceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccc-ccccCCcCeEecccccccccchh
Q 042890 91 LIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-EISSGNISWLFLRGIAIEELPSS 169 (254)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~~L~~L~l~~~~~~~l~~~ 169 (254)
..+++. .....+.|+.|++++|. +..+|........|+.+++++|....... .....++..+.+..|.+..++..
T Consensus 175 -l~~l~~--~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 175 -LSDLPK--LLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred -hhhhhh--hhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch
Confidence 667764 44478999999999998 46677655566679999999985333322 22246777777888888877788
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccC
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLP 215 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 215 (254)
+..+++++.|++++|.+...-. ++...+++.++++++......+
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 8888999999999988655432 7888999999999977654433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.6e-11 Score=97.85 Aligned_cols=197 Identities=16% Similarity=0.113 Sum_probs=105.9
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCc-eeecCCCCccCCcccccEEeccCCcCCCccCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKL-IAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGI 125 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 125 (254)
.+|+...|.++.+...+.. +..+.|++++.|+++.+-.. +..+.. ...-+++|+.|+++.|.+........
T Consensus 121 kkL~~IsLdn~~V~~~~~~------~~~k~~~~v~~LdLS~NL~~nw~~v~~--i~eqLp~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIE------EYSKILPNVRDLDLSRNLFHNWFPVLK--IAEQLPSLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HhhhheeecCccccccchh------hhhhhCCcceeecchhhhHHhHHHHHH--HHHhcccchhcccccccccCCccccc
Confidence 5677777777765544321 22566777777777733211 222221 22346777777777776432222111
Q ss_pred -CCCCcccEEeccCCCCCcccc-cc--ccCCcCeEeccccc-ccccchhhhhccccCEEeccCCcCcccC-CccccCCCc
Q 042890 126 -FNLEFLTKLDLSGCSKLKRLP-EI--SSGNISWLFLRGIA-IEELPSSIERQLRLSWLDLSDCKRLKSL-PSSLYRLKS 199 (254)
Q Consensus 126 -~~l~~L~~L~l~~~~~~~~~p-~~--~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~ 199 (254)
..+++|+.|.++.|.+...-- .. .+++++.|++.+|. +........-...|+.||+++|.+.+.. ....+.++.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence 135677777777776553211 11 13677777777773 2211111223356777777777766532 123556777
Q ss_pred cCEEEecCCCCCcc-cCcc-----ccCCCCCcEEeccCCCCCCCCh--hhhhhcccCccc
Q 042890 200 LGILDLHGCSNLQR-LPEC-----LGQLSSPITCNLAKTNIERIPE--SIIQLFVSGYLL 251 (254)
Q Consensus 200 L~~L~l~~~~~~~~-~~~~-----~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~ 251 (254)
|..++++.|.+.+. .|+. ...+++|+.|++..|++.+.+. .+..+++|+.+.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 77777776665442 2222 2346778888888888755443 244445554443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.8e-11 Score=95.97 Aligned_cols=131 Identities=13% Similarity=0.037 Sum_probs=58.0
Q ss_pred cccccEEeccCCcCCC-ccCCCCCCCCcccEEeccCCCCCc--cccccccCCcCeEecccccccccc--hhhhhccccCE
Q 042890 104 MKKLVILNLRGSKSLK-SLPSGIFNLEFLTKLDLSGCSKLK--RLPEISSGNISWLFLRGIAIEELP--SSIERQLRLSW 178 (254)
Q Consensus 104 ~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~ 178 (254)
+++|+.|.++.|++.. .+...+..+|.|+.|++..|.... ..+...+..|+.|++++|.+-.++ .....++.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 4455555555555431 111122345555555555542111 112222345555555555555444 22444455555
Q ss_pred EeccCCcCcc-cCCcc-----ccCCCccCEEEecCCCCCcc-cCccccCCCCCcEEeccCCCC
Q 042890 179 LDLSDCKRLK-SLPSS-----LYRLKSLGILDLHGCSNLQR-LPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 179 L~l~~n~~~~-~~~~~-----l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l 234 (254)
|.++.+.+.+ ..|+. ...+++|++|++..|++.+. ....+..+++|+.|.+..|++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 5555555443 22221 22345566666665554221 111223345555555555554
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=2.8e-11 Score=102.21 Aligned_cols=164 Identities=27% Similarity=0.272 Sum_probs=135.4
Q ss_pred ceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc-cCCcCeEecc
Q 042890 81 NQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLR 159 (254)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~ 159 (254)
...+++.++ ..++|. .+..+..|+.+.++.|. +..+|..+..+..|+++|++.|. ...+|... ...|+.+.++
T Consensus 78 ~~aDlsrNR--~~elp~--~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNR--FSELPE--EACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIVS 151 (722)
T ss_pred hhhhccccc--cccCch--HHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-hhcCChhhhcCcceeEEEe
Confidence 344566444 567777 78888899999999887 56788889999999999999966 45556544 5789999999
Q ss_pred cccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh
Q 042890 160 GIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE 239 (254)
Q Consensus 160 ~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 239 (254)
+|+++.+|..++....|..||.+.|.+. .+|..++++.+|+.+.+..|+.. .+|..++.+ .|..||++.|++..+|-
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecch
Confidence 9999999999998889999999999854 45667899999999999987664 466667744 58999999999999999
Q ss_pred hhhhhcccCccccc
Q 042890 240 SIIQLFVSGYLLLS 253 (254)
Q Consensus 240 ~~~~~~~L~~L~ls 253 (254)
.+.+|+.|++|.|.
T Consensus 229 ~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLE 242 (722)
T ss_pred hhhhhhhheeeeec
Confidence 99999999999875
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=5.1e-10 Score=88.08 Aligned_cols=125 Identities=23% Similarity=0.190 Sum_probs=90.0
Q ss_pred CCCCCCcccEEeccCCCCCccccccc-cCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCE
Q 042890 124 GIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGI 202 (254)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 202 (254)
++..+..|+++|+++|.+...-.... .+.++.|+++.|++..+.. +..+++|+.||+++|.+..- ...-.++.+.++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence 34567788999999976554332222 2788999999999887765 77888999999999885442 222335678889
Q ss_pred EEecCCCCCcccCccccCCCCCcEEeccCCCCCCCC--hhhhhhcccCcccc
Q 042890 203 LDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIP--ESIIQLFVSGYLLL 252 (254)
Q Consensus 203 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~~L~~L~l 252 (254)
|.+.+|.+.+ + +.+..+-+|..|++.+|+|..+. ..++++|-|+.+.+
T Consensus 357 L~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 357 LKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred eehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence 9998875533 2 33567889999999999987553 45788888877655
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=1.4e-10 Score=92.50 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=91.7
Q ss_pred CcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhh----cc--hhhhccccccee
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQ----LW--DRVKRYSKLNQI 83 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~----l~--~~~~~~~~L~~l 83 (254)
.+++..+++|++|++|.|.|+-..+ ..+.+-+.. ..|+.|+|.+|.+.......+.. +. .-...-+.|+++
T Consensus 85 ~~aL~~~~~L~~ldLSDNA~G~~g~--~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 85 SKALLGCPKLQKLDLSDNAFGPKGI--RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHhcCCceeEeeccccccCccch--HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 4566677788888888877733321 111122233 66777777777665443321111 00 112233455555
Q ss_pred hhhccCCc---eeecCCCCccCCcccccEEeccCCcCCC----ccCCCCCCCCcccEEeccCCCCCcc----ccc--ccc
Q 042890 84 IHAACHKL---IAKIPNPTLMPRMKKLVILNLRGSKSLK----SLPSGIFNLEFLTKLDLSGCSKLKR----LPE--ISS 150 (254)
Q Consensus 84 ~l~~~~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~p~--~~~ 150 (254)
....++-. ...+.. .|...+.|+.+.+.+|.+.. .+...+..+++|+.||+.+|.+... +.. ..+
T Consensus 163 i~~rNrlen~ga~~~A~--~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAE--AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EeeccccccccHHHHHH--HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 55533211 001111 33444555555555554321 1122344555666666655543321 110 011
Q ss_pred CCcCeEeccccccc-----ccchhh-hhccccCEEeccCCcCccc----CCccccCCCccCEEEecCCCC
Q 042890 151 GNISWLFLRGIAIE-----ELPSSI-ERQLRLSWLDLSDCKRLKS----LPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 151 ~~L~~L~l~~~~~~-----~l~~~~-~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~ 210 (254)
+.|+.+++++|.+. .+-..+ ...++|+.|.+.+|.+... +...+...+.|..|++++|..
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 34555555555544 111121 2345667777776665542 111233456666777776655
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=5.5e-09 Score=64.03 Aligned_cols=59 Identities=29% Similarity=0.327 Sum_probs=32.5
Q ss_pred ccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCC
Q 042890 175 RLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTN 233 (254)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 233 (254)
+|++|++++|++....+..|.++++|+.+++++|.+.+..+.+|.++++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555444333445555566666666555554445555556666666665554
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.6e-08 Score=90.38 Aligned_cols=104 Identities=19% Similarity=0.186 Sum_probs=62.6
Q ss_pred cccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEeccccccc-ccchhhhhccccCEEecc
Q 042890 106 KLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSSIERQLRLSWLDLS 182 (254)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~ 182 (254)
.++.|++.+|.+.+.+|..+..+++|+.|++++|.+.+.+|... +.+|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36667777777666667667777777777777766655555432 355666666666655 455556666666666666
Q ss_pred CCcCcccCCccccCC-CccCEEEecCCC
Q 042890 183 DCKRLKSLPSSLYRL-KSLGILDLHGCS 209 (254)
Q Consensus 183 ~n~~~~~~~~~l~~l-~~L~~L~l~~~~ 209 (254)
+|.+.+.+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 666655555554432 344555555543
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.78 E-value=1.8e-08 Score=90.13 Aligned_cols=91 Identities=31% Similarity=0.372 Sum_probs=68.9
Q ss_pred cCeEeccccccc-ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccC
Q 042890 153 ISWLFLRGIAIE-ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAK 231 (254)
Q Consensus 153 L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 231 (254)
++.|++.+|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556777777776 5677777778888888888877777777777788888888888777777777777788888888888
Q ss_pred CCCC-CCChhhhh
Q 042890 232 TNIE-RIPESIIQ 243 (254)
Q Consensus 232 n~l~-~l~~~~~~ 243 (254)
|.+. .+|..+..
T Consensus 500 N~l~g~iP~~l~~ 512 (623)
T PLN03150 500 NSLSGRVPAALGG 512 (623)
T ss_pred CcccccCChHHhh
Confidence 8776 66766543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.6e-08 Score=61.97 Aligned_cols=60 Identities=28% Similarity=0.302 Sum_probs=50.3
Q ss_pred CCcCeEecccccccccch-hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCC
Q 042890 151 GNISWLFLRGIAIEELPS-SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (254)
++|++|++.+|.++.+|. .+..+++|++|++++|++....+..|.++++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 357788888888888876 478899999999999998777777889999999999998853
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=4.2e-08 Score=90.14 Aligned_cols=87 Identities=23% Similarity=0.343 Sum_probs=53.6
Q ss_pred cccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCC
Q 042890 12 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHK 90 (254)
Q Consensus 12 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~ 90 (254)
..|..+|.|++|++++|.- -..+|+.+.. -+||+|+++++.+..+|.. ++++..|.+|++.....
T Consensus 565 ~ff~~m~~LrVLDLs~~~~------l~~LP~~I~~Li~LryL~L~~t~I~~LP~~--------l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSS------LSKLPSSIGELVHLRYLDLSDTGISHLPSG--------LGNLKKLIYLNLEVTGR 630 (889)
T ss_pred HHHhhCcceEEEECCCCCc------cCcCChHHhhhhhhhcccccCCCccccchH--------HHHHHhhheeccccccc
Confidence 3466677777777776542 2455666666 7777777777766666654 67777777777775443
Q ss_pred ceeecCCCCccCCcccccEEeccCC
Q 042890 91 LIAKIPNPTLMPRMKKLVILNLRGS 115 (254)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~ 115 (254)
+ ..++. ....+++|++|.+...
T Consensus 631 l-~~~~~--i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 631 L-ESIPG--ILLELQSLRVLRLPRS 652 (889)
T ss_pred c-ccccc--hhhhcccccEEEeecc
Confidence 2 22232 4444677777776654
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.9e-09 Score=84.74 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=15.8
Q ss_pred hccccCEEeccCCcCcc-cCCccccCCCccCEEEecCC
Q 042890 172 RQLRLSWLDLSDCKRLK-SLPSSLYRLKSLGILDLHGC 208 (254)
Q Consensus 172 ~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~ 208 (254)
.++-|++|.++.|.... ...-.+...+.|.+|++.||
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 34445555555543211 00012334455555555554
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.48 E-value=7.1e-09 Score=80.56 Aligned_cols=217 Identities=12% Similarity=0.043 Sum_probs=140.3
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCc---chhhcchhhhcccccceehhhccC
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN---DIEQLWDRVKRYSKLNQIIHAACH 89 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~---~l~~l~~~~~~~~~L~~l~l~~~~ 89 (254)
+..+..+..+++++|.|+.+. ...++..+.. .+|++.+++.-.....-+. ++.-+..++-.||.|+.++++++.
T Consensus 26 l~~~d~~~evdLSGNtigtEA--~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEA--MEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHhhcceeEEeccCCcccHHH--HHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 345888999999999995552 2456666777 9999999988655443322 445555677889999999999654
Q ss_pred CceeecCC--CCccCCcccccEEeccCCcCCCccCC--------------CCCCCCcccEEeccCCCCCcccccc-----
Q 042890 90 KLIAKIPN--PTLMPRMKKLVILNLRGSKSLKSLPS--------------GIFNLEFLTKLDLSGCSKLKRLPEI----- 148 (254)
Q Consensus 90 ~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~l~~L~~L~l~~~~~~~~~p~~----- 148 (254)
. ..+.|. ...+++.+.|.+|.+++|++ +.+.. -...-|.|+.+..++|++.......
T Consensus 104 f-g~~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l 181 (388)
T COG5238 104 F-GSEFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALL 181 (388)
T ss_pred c-CcccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence 2 122222 12556778999999999974 32211 1234577888888887644322111
Q ss_pred -ccCCcCeEeccccccc--cc----chhhhhccccCEEeccCCcCcccCC----ccccCCCccCEEEecCCCCCcccC--
Q 042890 149 -SSGNISWLFLRGIAIE--EL----PSSIERQLRLSWLDLSDCKRLKSLP----SSLYRLKSLGILDLHGCSNLQRLP-- 215 (254)
Q Consensus 149 -~~~~L~~L~l~~~~~~--~l----~~~~~~~~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~-- 215 (254)
....++.+.+..|.|. .+ -.++.+..+|+.||+.+|.++-.-+ ..+..|+.|+.|.+..|-+...-.
T Consensus 182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHH
Confidence 0147788888888776 12 2235566788899998888764322 235567778888888876543211
Q ss_pred --cccc--CCCCCcEEeccCCCC
Q 042890 216 --ECLG--QLSSPITCNLAKTNI 234 (254)
Q Consensus 216 --~~~~--~l~~L~~L~l~~n~l 234 (254)
..|. ..|+|+.|....|.+
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHhhhhcCCCccccccchhhh
Confidence 1121 247778888877765
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=8.5e-08 Score=88.15 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=47.5
Q ss_pred CceeeeeeCCCC-CCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCC
Q 042890 47 AEVKYLHWHGYP-LKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGI 125 (254)
Q Consensus 47 ~~L~~L~l~~~~-~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 125 (254)
+.|++|||++|. +..+|.. ++.+-+|++|+++++. ...+|. .+.+++.|.+|++..+.....+|...
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~--------I~~Li~LryL~L~~t~--I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~i~ 638 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSS--------IGELVHLRYLDLSDTG--ISHLPS--GLGNLKKLIYLNLEVTGRLESIPGIL 638 (889)
T ss_pred cceEEEECCCCCccCcCChH--------HhhhhhhhcccccCCC--ccccch--HHHHHHhhheeccccccccccccchh
Confidence 666777776654 4445443 6666666666666555 445665 66666667777666655444444433
Q ss_pred CCCCcccEEeccC
Q 042890 126 FNLEFLTKLDLSG 138 (254)
Q Consensus 126 ~~l~~L~~L~l~~ 138 (254)
..+++|++|.+..
T Consensus 639 ~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 639 LELQSLRVLRLPR 651 (889)
T ss_pred hhcccccEEEeec
Confidence 3466666666554
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=3e-08 Score=84.70 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=57.4
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
.+|..+++.+|.++.+... +..+++|++++++++. +..+. .+..++.|+.|++.+|.+ ..+.. +.
T Consensus 95 ~~l~~l~l~~n~i~~i~~~--------l~~~~~L~~L~ls~N~--I~~i~---~l~~l~~L~~L~l~~N~i-~~~~~-~~ 159 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENL--------LSSLVNLQVLDLSFNK--ITKLE---GLSTLTLLKELNLSGNLI-SDISG-LE 159 (414)
T ss_pred cceeeeeccccchhhcccc--------hhhhhcchheeccccc--ccccc---chhhccchhhheeccCcc-hhccC-Cc
Confidence 6666666666666555432 4456666666666444 34433 455555666666666653 22222 44
Q ss_pred CCCcccEEeccCCCCCcccc--ccccCCcCeEeccccccccc
Q 042890 127 NLEFLTKLDLSGCSKLKRLP--EISSGNISWLFLRGIAIEEL 166 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p--~~~~~~L~~L~l~~~~~~~l 166 (254)
.++.|+.+++++|.+...-+ .....+++.+++.+|.+..+
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 46666666666655444333 12235566666666655533
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.42 E-value=2.3e-08 Score=85.36 Aligned_cols=107 Identities=23% Similarity=0.230 Sum_probs=65.0
Q ss_pred hhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCc
Q 042890 74 VKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNI 153 (254)
Q Consensus 74 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L 153 (254)
+..+.+|+.+++.++. +..+.. .+..+++|++|++++|.+. .+.. +..++.|+.|++.+|.+...-....+..+
T Consensus 91 l~~~~~l~~l~l~~n~--i~~i~~--~l~~~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK--IEKIEN--LLSSLVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLISDISGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccc--hhhccc--chhhhhcchheeccccccc-cccc-hhhccchhhheeccCcchhccCCccchhh
Confidence 4566677777776444 344432 2566777777777777643 3332 55666677777777654443222224677
Q ss_pred CeEecccccccccchh-hhhccccCEEeccCCcC
Q 042890 154 SWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKR 186 (254)
Q Consensus 154 ~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~ 186 (254)
+.+++++|.+..+... ...+.+++.+.+++|.+
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 7777777777766553 35566677777777664
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=3.9e-08 Score=85.95 Aligned_cols=148 Identities=23% Similarity=0.141 Sum_probs=94.6
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCC-CcccEEeccCC---------CCCcccccc-ccCCcCeEecccccccccch
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNL-EFLTKLDLSGC---------SKLKRLPEI-SSGNISWLFLRGIAIEELPS 168 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~---------~~~~~~p~~-~~~~L~~L~l~~~~~~~l~~ 168 (254)
.+..+++|++|.+++|.+.. . ..+..+ .+|+.|...+. ...+++... ....|...+.+.|.+..+..
T Consensus 104 ~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred eeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 56678899999999998533 1 112121 34554433221 011111111 12456666777888888888
Q ss_pred hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCcc-ccCCCCCcEEeccCCCCCCCChhhhhhccc
Q 042890 169 SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPEC-LGQLSSPITCNLAKTNIERIPESIIQLFVS 247 (254)
Q Consensus 169 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 247 (254)
.++-++.++.|++++|++.+.- .+..++.|++||++.|.+. .+|.. ...+. |+.|.+.+|.++.+- ++.++++|
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 8888888999999998876642 5777888999999887654 33331 12233 888888888877664 37777888
Q ss_pred CcccccC
Q 042890 248 GYLLLSY 254 (254)
Q Consensus 248 ~~L~ls~ 254 (254)
+-||++|
T Consensus 257 ~~LDlsy 263 (1096)
T KOG1859|consen 257 YGLDLSY 263 (1096)
T ss_pred hccchhH
Confidence 7777764
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=1.2e-08 Score=88.94 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.0
Q ss_pred CCceeeeeeCCCCCCC
Q 042890 46 FAEVKYLHWHGYPLKS 61 (254)
Q Consensus 46 ~~~L~~L~l~~~~~~~ 61 (254)
+..|++|.+.+|.+..
T Consensus 108 F~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLST 123 (1096)
T ss_pred ccceeeEEecCcchhh
Confidence 3788888888887654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2.4e-08 Score=78.60 Aligned_cols=179 Identities=21% Similarity=0.213 Sum_probs=111.2
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCc--cCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKS--LPSG 124 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~ 124 (254)
..|+++||++..++ .. .+...++.|.+|+.|.+.+.+- .+.+.. .++.-..|+.++++.|.-... +.-.
T Consensus 185 sRlq~lDLS~s~it---~s---tl~~iLs~C~kLk~lSlEg~~L-dD~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNSVIT---VS---TLHGILSQCSKLKNLSLEGLRL-DDPIVN--TIAKNSNLVRLNLSMCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcchhhee---HH---HHHHHHHHHHhhhhcccccccc-CcHHHH--HHhccccceeeccccccccchhHHHHH
Confidence 55888888876443 21 2223367788888888886553 233333 566677888888887752211 1122
Q ss_pred CCCCCcccEEeccCCCCCcccccc----ccCCcCeEeccccccc----ccchhhhhccccCEEeccCCcCcc-cCCcccc
Q 042890 125 IFNLEFLTKLDLSGCSKLKRLPEI----SSGNISWLFLRGIAIE----ELPSSIERQLRLSWLDLSDCKRLK-SLPSSLY 195 (254)
Q Consensus 125 ~~~l~~L~~L~l~~~~~~~~~p~~----~~~~L~~L~l~~~~~~----~l~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~ 195 (254)
+..++.|..|+++.|......... ....+..|.++|+.-. .+..-....+++.+||+++|.-.. ..-..+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 456778888888887654432110 1256778888876322 333445677889999998875333 2223456
Q ss_pred CCCccCEEEecCCCCCc-ccCccccCCCCCcEEeccCCCC
Q 042890 196 RLKSLGILDLHGCSNLQ-RLPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 196 ~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~l 234 (254)
+++-|+++.++.|.... ...-.+...|+|..|++.++--
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 77888889888875432 1122456778888998887653
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=2.4e-05 Score=65.60 Aligned_cols=136 Identities=26% Similarity=0.422 Sum_probs=87.8
Q ss_pred hhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCc
Q 042890 74 VKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNI 153 (254)
Q Consensus 74 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L 153 (254)
+..+.+++.|++++|. +..+|. + -.+|+.|.+++|.....+|..+ .++|+.|++++|.....+| ..|
T Consensus 48 ~~~~~~l~~L~Is~c~--L~sLP~---L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD--IESLPV---L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC--CcccCC---C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----ccc
Confidence 4567889999999874 455542 1 2369999999887666666544 3589999999986555555 567
Q ss_pred CeEecccccc---cccchhhhhccccCEEeccCCcCc--ccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEe
Q 042890 154 SWLFLRGIAI---EELPSSIERQLRLSWLDLSDCKRL--KSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCN 228 (254)
Q Consensus 154 ~~L~l~~~~~---~~l~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 228 (254)
+.|.+..+.. ..+|. +|+.|.+.++... ..++.. -.++|+.|++++|... ..|..+ ..+|+.|.
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCcEEE
Confidence 8888876653 34554 4566766543211 111111 1257999999988754 244433 25889999
Q ss_pred ccCCC
Q 042890 229 LAKTN 233 (254)
Q Consensus 229 l~~n~ 233 (254)
+..+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87763
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=0.0001 Score=61.90 Aligned_cols=133 Identities=21% Similarity=0.332 Sum_probs=86.3
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
.+++.|++++|.++.+|.. -.+|++|.+++|..+ ..+|. .+ .+.|+.|++.+|..+..+|.
T Consensus 52 ~~l~~L~Is~c~L~sLP~L-----------P~sLtsL~Lsnc~nL-tsLP~--~L--P~nLe~L~Ls~Cs~L~sLP~--- 112 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL-----------PNELTEITIENCNNL-TTLPG--SI--PEGLEKLTVCHCPEISGLPE--- 112 (426)
T ss_pred cCCCEEEeCCCCCcccCCC-----------CCCCcEEEccCCCCc-ccCCc--hh--hhhhhheEccCccccccccc---
Confidence 7899999999998888732 246999999988774 55554 33 35899999999954555554
Q ss_pred CCCcccEEeccCCCCCccccccccCCcCeEeccccccc---ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEE
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIE---ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGIL 203 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 203 (254)
.|+.|++.++.. ..++..+ .+|+.|.+.++... .+|. .-.++|++|++++|.... .|..+ ..+|+.|
T Consensus 113 ---sLe~L~L~~n~~-~~L~~LP-ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L 182 (426)
T PRK15386 113 ---SVRSLEIKGSAT-DSIKNVP-NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKL--PESLQSI 182 (426)
T ss_pred ---ccceEEeCCCCC-cccccCc-chHhheecccccccccccccc--ccCCcccEEEecCCCccc-Ccccc--cccCcEE
Confidence 466677765432 2233222 67888887543211 2221 112589999999887442 33222 2578999
Q ss_pred EecCC
Q 042890 204 DLHGC 208 (254)
Q Consensus 204 ~l~~~ 208 (254)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 98765
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.7e-05 Score=44.76 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=20.0
Q ss_pred CcCeEecccccccccchhhhhccccCEEeccCCcCc
Q 042890 152 NISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRL 187 (254)
Q Consensus 152 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~ 187 (254)
+|++|++++|.++.+|+.++.+++|+.|++++|.+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555666666666555566666666666666543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=6.9e-06 Score=65.07 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=93.7
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCc--eeecCCCCccCCcccccEEeccCCcCC-CccCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKL--IAKIPNPTLMPRMKKLVILNLRGSKSL-KSLPS 123 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~ 123 (254)
+.++.+||.+|.+....+ +. .-+..+|.|++|+++.+.-. ++.+|. -..+|++|-+.+.... .....
T Consensus 71 ~~v~elDL~~N~iSdWse--I~---~ile~lP~l~~LNls~N~L~s~I~~lp~-----p~~nl~~lVLNgT~L~w~~~~s 140 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSE--IG---AILEQLPALTTLNLSCNSLSSDIKSLPL-----PLKNLRVLVLNGTGLSWTQSTS 140 (418)
T ss_pred hhhhhhhcccchhccHHH--HH---HHHhcCccceEeeccCCcCCCccccCcc-----cccceEEEEEcCCCCChhhhhh
Confidence 667778888875543321 11 22567788888888754321 222221 2456777777765421 12233
Q ss_pred CCCCCCcccEEeccCCCCCc-----cccccccCCcCeEeccccccc---ccchhhhhccccCEEeccCCcCccc-CCccc
Q 042890 124 GIFNLEFLTKLDLSGCSKLK-----RLPEISSGNISWLFLRGIAIE---ELPSSIERQLRLSWLDLSDCKRLKS-LPSSL 194 (254)
Q Consensus 124 ~~~~l~~L~~L~l~~~~~~~-----~~p~~~~~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~n~~~~~-~~~~l 194 (254)
.+..+|++++|.++.|+... .....+.+.+..+...+|... .+..-.+.++++..+.++.|.+.+. .-...
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s 220 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS 220 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC
Confidence 45567777788777763221 111122244555555555433 1222233456677777776654331 11223
Q ss_pred cCCCccCEEEecCCCCCcc-cCccccCCCCCcEEeccCCCC
Q 042890 195 YRLKSLGILDLHGCSNLQR-LPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 195 ~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l 234 (254)
..++.+..|++..+++-+. ..+++.++++|..|.+.++++
T Consensus 221 e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 221 EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 4455555666666554332 234456677777777777765
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.83 E-value=3e-07 Score=75.53 Aligned_cols=89 Identities=20% Similarity=0.345 Sum_probs=45.4
Q ss_pred CCCCcceEEEeeccccCCCccCcccccCCCC-C-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 15 TKMPKLRFLKFYSSLFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
..+++++.|.+.++.-..+ .....+. + ++|+++++..|. .+++..++.+ -..|++|+++++++|+...
T Consensus 161 ~~CpnIehL~l~gc~~iTd-----~s~~sla~~C~~l~~l~L~~c~--~iT~~~Lk~l---a~gC~kL~~lNlSwc~qi~ 230 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITD-----SSLLSLARYCRKLRHLNLHSCS--SITDVSLKYL---AEGCRKLKYLNLSWCPQIS 230 (483)
T ss_pred hhCCchhhhhhhcceeccH-----HHHHHHHHhcchhhhhhhcccc--hhHHHHHHHH---HHhhhhHHHhhhccCchhh
Confidence 4577777777777653111 1111222 2 677777777765 2333333333 3456677777777665432
Q ss_pred ee-cCCCCccCCcccccEEeccCC
Q 042890 93 AK-IPNPTLMPRMKKLVILNLRGS 115 (254)
Q Consensus 93 ~~-~~~~~~~~~~~~L~~L~l~~~ 115 (254)
+. +.. .+.+++.++.+...+|
T Consensus 231 ~~gv~~--~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 231 GNGVQA--LQRGCKELEKLSLKGC 252 (483)
T ss_pred cCcchH--Hhccchhhhhhhhccc
Confidence 21 111 3344555555544444
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1.9e-06 Score=68.11 Aligned_cols=201 Identities=13% Similarity=0.035 Sum_probs=112.7
Q ss_pred CCCcceEEEeeccccCCCccCccc-ccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCcee
Q 042890 16 KMPKLRFLKFYSSLFNGENKCKMS-YLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIA 93 (254)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~ 93 (254)
.+++++.|++.+|.|. ... +..-+.. +.|++|+++.|++..--+ .+| --..+|++|.+.+..-.+.
T Consensus 69 ~~~~v~elDL~~N~iS-----dWseI~~ile~lP~l~~LNls~N~L~s~I~----~lp---~p~~nl~~lVLNgT~L~w~ 136 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS-----DWSEIGAILEQLPALTTLNLSCNSLSSDIK----SLP---LPLKNLRVLVLNGTGLSWT 136 (418)
T ss_pred Hhhhhhhhhcccchhc-----cHHHHHHHHhcCccceEeeccCCcCCCccc----cCc---ccccceEEEEEcCCCCChh
Confidence 3566777777777761 111 1222344 888888888886543211 111 1345788887777665555
Q ss_pred ecCCCCccCCcccccEEeccCCcCCCcc--CCCCCCC-CcccEEeccCCCCCccccc----cccCCcCeEeccccccccc
Q 042890 94 KIPNPTLMPRMKKLVILNLRGSKSLKSL--PSGIFNL-EFLTKLDLSGCSKLKRLPE----ISSGNISWLFLRGIAIEEL 166 (254)
Q Consensus 94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l-~~L~~L~l~~~~~~~~~p~----~~~~~L~~L~l~~~~~~~l 166 (254)
.... .+..+|.++.|.++.|...... ....... +.+..+....|....+... -.++++..+.+..|.+...
T Consensus 137 ~~~s--~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~ 214 (418)
T KOG2982|consen 137 QSTS--SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTE 214 (418)
T ss_pred hhhh--hhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccch
Confidence 5554 6677888888888887421110 1111111 1333444444322211110 0125777777777766633
Q ss_pred c--hhhhhccccCEEeccCCcCcc-cCCccccCCCccCEEEecCCCCCcccCc------cccCCCCCcEEecc
Q 042890 167 P--SSIERQLRLSWLDLSDCKRLK-SLPSSLYRLKSLGILDLHGCSNLQRLPE------CLGQLSSPITCNLA 230 (254)
Q Consensus 167 ~--~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~ 230 (254)
. +....++.+.-|.++.+.+.+ .-.+.+.++++|.-+.++++.+.+.+.. .++++++++.|+=+
T Consensus 215 s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 215 SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 2 234455566677777776543 2234677888899999988877654321 24567888887644
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=4.4e-06 Score=75.18 Aligned_cols=150 Identities=14% Similarity=0.080 Sum_probs=83.5
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
.+|++|++++.. .+.....+++ -.-+|.|+.|.+.+.....+++.. ....+++|..||++++++ ..+ ..+.
T Consensus 122 ~nL~~LdI~G~~--~~s~~W~~ki---g~~LPsL~sL~i~~~~~~~~dF~~--lc~sFpNL~sLDIS~TnI-~nl-~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSE--LFSNGWPKKI---GTMLPSLRSLVISGRQFDNDDFSQ--LCASFPNLRSLDISGTNI-SNL-SGIS 192 (699)
T ss_pred HhhhhcCccccc--hhhccHHHHH---hhhCcccceEEecCceecchhHHH--HhhccCccceeecCCCCc-cCc-HHHh
Confidence 778888887743 3333333333 235677777777754433333333 555677788888887763 333 3366
Q ss_pred CCCcccEEeccCCCCCccc---cccccCCcCeEecccccccccchh-------hhhccccCEEeccCCcCcccCCcc-cc
Q 042890 127 NLEFLTKLDLSGCSKLKRL---PEISSGNISWLFLRGIAIEELPSS-------IERQLRLSWLDLSDCKRLKSLPSS-LY 195 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~---p~~~~~~L~~L~l~~~~~~~l~~~-------~~~~~~L~~L~l~~n~~~~~~~~~-l~ 195 (254)
.+++|+.|.+.+-.+.... .-+.+++|+.|+++...-...+.. -..+|+|+.||.++..+...+.+. +.
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 6777777766653333211 112246777777777654433321 223578888888877765543322 23
Q ss_pred CCCccCEEEe
Q 042890 196 RLKSLGILDL 205 (254)
Q Consensus 196 ~l~~L~~L~l 205 (254)
..++|+.+..
T Consensus 273 sH~~L~~i~~ 282 (699)
T KOG3665|consen 273 SHPNLQQIAA 282 (699)
T ss_pred hCccHhhhhh
Confidence 3455555543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=7.1e-06 Score=73.91 Aligned_cols=130 Identities=26% Similarity=0.271 Sum_probs=72.7
Q ss_pred ccccEEeccCCcCC-CccCCCCC-CCCcccEEeccCCCCCcc-cccc--ccCCcCeEecccccccccchhhhhccccCEE
Q 042890 105 KKLVILNLRGSKSL-KSLPSGIF-NLEFLTKLDLSGCSKLKR-LPEI--SSGNISWLFLRGIAIEELPSSIERQLRLSWL 179 (254)
Q Consensus 105 ~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~~~~~-~p~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 179 (254)
.+|++|++++.... ...|..++ -+|.|+.|.+++-.+... +... .+++|..|++++++++.+ .+++++.+|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45667777664321 11122222 356777776666222111 1110 136777777777777766 567777778777
Q ss_pred eccCCcCcc-cCCccccCCCccCEEEecCCCCCcc------cCccccCCCCCcEEeccCCCCC
Q 042890 180 DLSDCKRLK-SLPSSLYRLKSLGILDLHGCSNLQR------LPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 180 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
.+.+-.+.. ..-..+..+++|+.||++....... ..+.-..+|+|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777655443 1122466778888888876432211 1122234788888888887764
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=4.2e-05 Score=43.13 Aligned_cols=38 Identities=34% Similarity=0.363 Sum_probs=18.3
Q ss_pred ccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCC
Q 042890 199 SLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERI 237 (254)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 237 (254)
+|++|++++|++.+ +|..+.++++|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555554432 333345555555555555555544
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=9.9e-05 Score=55.38 Aligned_cols=100 Identities=23% Similarity=0.276 Sum_probs=50.1
Q ss_pred cccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccch--hhhhccccCEEec
Q 042890 106 KLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS--SIERQLRLSWLDL 181 (254)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l 181 (254)
+...+|+++|.+ ..++. +..++.|.+|.+++|.+...-|... +++++.|.+.+|++..+-. .+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl-~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccch-hhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666652 33333 5566666666666655544444322 2456666666665553321 1334455666665
Q ss_pred cCCcCcccC-C--ccccCCCccCEEEecC
Q 042890 182 SDCKRLKSL-P--SSLYRLKSLGILDLHG 207 (254)
Q Consensus 182 ~~n~~~~~~-~--~~l~~l~~L~~L~l~~ 207 (254)
-+|.....- . -.+..+++|+.||+++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 555543310 0 1234555666666543
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=6.9e-06 Score=57.77 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=46.6
Q ss_pred CcCeEecccccccccchhhhh-ccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEecc
Q 042890 152 NISWLFLRGIAIEELPSSIER-QLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLA 230 (254)
Q Consensus 152 ~L~~L~l~~~~~~~l~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 230 (254)
.|...++++|.+..+|+.+.. .+.+..+++++|++ .++|.++..++.|+.+++..|.+ ...|+.+..+.++..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcCC
Confidence 444556666666666655433 23556666666653 33455566666666666665443 2334434445556666666
Q ss_pred CCCCCCCCh
Q 042890 231 KTNIERIPE 239 (254)
Q Consensus 231 ~n~l~~l~~ 239 (254)
+|.+..++-
T Consensus 132 ~na~~eid~ 140 (177)
T KOG4579|consen 132 ENARAEIDV 140 (177)
T ss_pred CCccccCcH
Confidence 665544443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00014 Score=54.62 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=84.5
Q ss_pred ccEEeccCCcCCCccCCCCC-CCCcccEEeccCCCCCccccccc-cCCcCeEecccccccccchhhhh-ccccCEEeccC
Q 042890 107 LVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIER-QLRLSWLDLSD 183 (254)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~l~~~~~~-~~~L~~L~l~~ 183 (254)
=+.+++++.++. .+.. ++ -..+...+|+++|.+. .++.+. +..|.+|.+.+|.|+.+.+.+.. .++|+.|.+.+
T Consensus 21 e~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccc-chhh-ccccccccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 456666665421 1111 11 1346678899997644 333333 47899999999999988777554 57899999999
Q ss_pred CcCcc--cCCccccCCCccCEEEecCCCCCcccC---ccccCCCCCcEEeccCCCC
Q 042890 184 CKRLK--SLPSSLYRLKSLGILDLHGCSNLQRLP---ECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 184 n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~n~l 234 (254)
|++.. .+ .-+..++.|++|.+-+|+....-- -.+..+|+|+.||+++-..
T Consensus 98 Nsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 98 NSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 98765 22 226678899999999887764321 2346789999999887654
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=2.4e-05 Score=55.14 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=67.6
Q ss_pred ccccEEeccCCcCC--CccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccchhhhhccccCEE
Q 042890 105 KKLVILNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIERQLRLSWL 179 (254)
Q Consensus 105 ~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 179 (254)
+.+..++++.|++. ...+..+.+...|+.+++++|. ...+|+.. ++.++.+.+.+|.+..+|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 34555666666532 1222234445566667777754 33344322 246677788888888888888888889999
Q ss_pred eccCCcCcccCCccccCCCccCEEEecCCCCCcc
Q 042890 180 DLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQR 213 (254)
Q Consensus 180 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 213 (254)
+++.|.+.. .|..+..+.++-.|+..+|.....
T Consensus 106 Nl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 106 NLRFNPLNA-EPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred ccccCcccc-chHHHHHHHhHHHhcCCCCccccC
Confidence 988887544 344455577777777777655443
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.04 E-value=5.9e-06 Score=68.14 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCCccCEEEecCCCCCcc-----cCccccCCCCCcEEeccCCCCC--CCChhhhhhcccCcccc
Q 042890 196 RLKSLGILDLHGCSNLQR-----LPECLGQLSSPITCNLAKTNIE--RIPESIIQLFVSGYLLL 252 (254)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~l 252 (254)
+++.|+.+.+++|..... +...-+++..|+.+-+++++.. ..-+.+..+++|+.+++
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 455666666665543321 1222344566666666666642 33445666777776654
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.04 E-value=8e-05 Score=58.48 Aligned_cols=173 Identities=15% Similarity=0.087 Sum_probs=104.1
Q ss_pred CCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcc------hhhhcccccce
Q 042890 10 NPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLW------DRVKRYSKLNQ 82 (254)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~------~~~~~~~~L~~ 82 (254)
-.+++.+||+|+..+++.|.|+...+ ..+.+.+.. ..|.+|.+++|.+..+....|.+-. .-...-|.|++
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~--e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFP--EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccc--hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 34578899999999999999844422 122233455 8999999999999887765333221 11234567888
Q ss_pred ehhhccCCceeecCC---CCccCCcccccEEeccCCcCCCc-----cCCCCCCCCcccEEeccCCCCCcc--------cc
Q 042890 83 IIHAACHKLIAKIPN---PTLMPRMKKLVILNLRGSKSLKS-----LPSGIFNLEFLTKLDLSGCSKLKR--------LP 146 (254)
Q Consensus 83 l~l~~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~--------~p 146 (254)
+....++. ...+. ...+..-..|+++.+.+|.+... +-..+..+.+|+.||+.+|.+... ++
T Consensus 162 vicgrNRl--engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~ 239 (388)
T COG5238 162 VICGRNRL--ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239 (388)
T ss_pred EEeccchh--ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc
Confidence 77664432 11111 00233335788888888875322 011234567899999998765432 22
Q ss_pred ccccCCcCeEeccccccc--ccc---hhh--hhccccCEEeccCCcCcc
Q 042890 147 EISSGNISWLFLRGIAIE--ELP---SSI--ERQLRLSWLDLSDCKRLK 188 (254)
Q Consensus 147 ~~~~~~L~~L~l~~~~~~--~l~---~~~--~~~~~L~~L~l~~n~~~~ 188 (254)
.| ..|+.|.+..|-+. ... ..+ ...++|..|-..+|...+
T Consensus 240 ~W--~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 240 EW--NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred cc--chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 22 34778888877655 111 111 134677777777776544
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.00036 Score=54.38 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=19.8
Q ss_pred ccCCcccccEEeccCC--cCCCccCCCCCCCCcccEEeccCCC
Q 042890 100 LMPRMKKLVILNLRGS--KSLKSLPSGIFNLEFLTKLDLSGCS 140 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~ 140 (254)
.+..+++|+.|.+++| ...+.++..+..+|+|+++++++|.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 3444556666666655 2222233223344555555555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00065 Score=52.99 Aligned_cols=84 Identities=24% Similarity=0.173 Sum_probs=42.8
Q ss_pred CCCcccEEeccCCCCCccccccccCCcCeEecccc--ccc-ccchhhhhccccCEEeccCCcCcc--cCCccccCCCccC
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI--AIE-ELPSSIERQLRLSWLDLSDCKRLK--SLPSSLYRLKSLG 201 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~--~~~-~l~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~ 201 (254)
.+..|+.+.+.++..++..-...+++|+.|.++.| ++. .++.-+...++|+++.+++|++.. .+ ..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchh
Confidence 45556666665544333222222346666666666 333 344444445666666666666543 11 1234455566
Q ss_pred EEEecCCCCC
Q 042890 202 ILDLHGCSNL 211 (254)
Q Consensus 202 ~L~l~~~~~~ 211 (254)
.|++..|...
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666655443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.58 E-value=0.019 Score=40.31 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=14.7
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccC
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG 138 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 138 (254)
.|.++.+|+.+.+... +...-...+..+++++.+.+.+
T Consensus 7 ~F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESS
T ss_pred HHhCCCCCCEEEECCC-eeEeChhhcccccccccccccc
Confidence 4555556666665532 1211123344555566555544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00011 Score=57.99 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeec
Q 042890 17 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKI 95 (254)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 95 (254)
+.+.+.|+.++|.+++. +++ .. +.|++|.|+-|.++.+.+ +..|++|++|++..+. +..+
T Consensus 18 l~~vkKLNcwg~~L~DI-----sic---~kMp~lEVLsLSvNkIssL~p---------l~rCtrLkElYLRkN~--I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-----SIC---EKMPLLEVLSLSVNKISSLAP---------LQRCTRLKELYLRKNC--IESL 78 (388)
T ss_pred HHHhhhhcccCCCccHH-----HHH---HhcccceeEEeeccccccchh---------HHHHHHHHHHHHHhcc--cccH
Confidence 45677788888887222 222 23 789999999998887754 6788999999988544 2333
Q ss_pred CCCCccCCcccccEEeccCCcCCCc
Q 042890 96 PNPTLMPRMKKLVILNLRGSKSLKS 120 (254)
Q Consensus 96 ~~~~~~~~~~~L~~L~l~~~~~~~~ 120 (254)
.+...+.++++|+.|.+..|+.-+.
T Consensus 79 dEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 79 DELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHHHhcCchhhhHhhccCCcccc
Confidence 2212677888999999988876544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00036 Score=55.10 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=30.3
Q ss_pred ccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCC
Q 042890 77 YSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS 140 (254)
Q Consensus 77 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 140 (254)
+.+.+.|++-||. ...+. ....++.|++|.++-|.+. .+.+ +..+.+|++|++..|.
T Consensus 18 l~~vkKLNcwg~~--L~DIs---ic~kMp~lEVLsLSvNkIs-sL~p-l~rCtrLkElYLRkN~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--LDDIS---ICEKMPLLEVLSLSVNKIS-SLAP-LQRCTRLKELYLRKNC 74 (388)
T ss_pred HHHhhhhcccCCC--ccHHH---HHHhcccceeEEeeccccc-cchh-HHHHHHHHHHHHHhcc
Confidence 3445555544444 22322 3335667777777776642 2222 5566666666666644
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.73 E-value=0.0013 Score=57.11 Aligned_cols=65 Identities=25% Similarity=0.255 Sum_probs=28.6
Q ss_pred hcccccceehhhccCCceeecCCCCccC-CcccccEEeccCCcC-CC-ccCCCCCCCCcccEEeccCCCC
Q 042890 75 KRYSKLNQIIHAACHKLIAKIPNPTLMP-RMKKLVILNLRGSKS-LK-SLPSGIFNLEFLTKLDLSGCSK 141 (254)
Q Consensus 75 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~-~~-~~~~~~~~l~~L~~L~l~~~~~ 141 (254)
..+++|+.++++.+....+..-. .++ .++.|++|.+..|.- +. .+......++.|++|+++.|..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~--~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLS--ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHH--HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 34456666666655432111111 111 255666666555541 11 1111123455566666665544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.13 E-value=0.18 Score=35.16 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=48.3
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccC-CCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhh
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
+...+|..+++|+.+.+.. .+ ..+.. .+.. .+|+.+.+.++ +..++.. ++..++.++.+.+.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~-------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~-------~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TI-------KKIGENAFSNCTSLKSINFPNN-LTSIGDN-------AFSNCKSLESITFP 66 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T---------EE-TTTTTT-TT-SEEEESST-TSCE-TT-------TTTT-TT-EEEEET
T ss_pred ECHHHHhCCCCCCEEEECC-Ce-------eEeChhhccccccccccccccc-cccccee-------eeeccccccccccc
Confidence 5667888888888888764 23 22322 2344 57888888774 5555543 35556667777665
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEecc
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLS 137 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 137 (254)
.. ...++. ..|..++.++.+++..+ +...-...+.+. +++.+.+.
T Consensus 67 ~~---~~~i~~-~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 67 NN---LKSIGD-NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ST---T-EE-T-TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cc---cccccc-ccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 31 122221 15555667777776543 221112334444 55555543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.013 Score=27.44 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=11.2
Q ss_pred cccEEeccCCcCCCccCCCCC
Q 042890 106 KLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~ 126 (254)
+|++|++++|.+. .+|+.+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666544 5555443
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.99 E-value=0.013 Score=25.47 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=6.5
Q ss_pred ceeeeeeCCCCCCCC
Q 042890 48 EVKYLHWHGYPLKSL 62 (254)
Q Consensus 48 ~L~~L~l~~~~~~~l 62 (254)
+|++|++.+|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455566665555443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.68 E-value=0.00022 Score=61.77 Aligned_cols=183 Identities=18% Similarity=0.163 Sum_probs=84.2
Q ss_pred ceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcc-cccceehhhccCCc---eee
Q 042890 20 LRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRY-SKLNQIIHAACHKL---IAK 94 (254)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~-~~L~~l~l~~~~~~---~~~ 94 (254)
+..|.+.+|.+..... ......+.. ..|..|++++|.+. +.+.+.+.+++... ..+++|.+..|.-. ...
T Consensus 89 l~~L~L~~~~l~~~~~--~~l~~~l~t~~~L~~L~l~~n~l~---~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGA--EELAQALKTLPTLGQLDLSGNNLG---DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP 163 (478)
T ss_pred HHHhhhhhCccccchH--HHHHHHhcccccHhHhhcccCCCc---cHhHHHHHhhcccchHHHHHHHhhcccccccchHH
Confidence 5566666666532211 122223334 66677777777654 33444444444443 44555555544332 111
Q ss_pred cCCCCccCCcccccEEeccCCcCCC----ccCCCC----CCCCcccEEeccCCCCCccc--------cccccCCcCeEec
Q 042890 95 IPNPTLMPRMKKLVILNLRGSKSLK----SLPSGI----FNLEFLTKLDLSGCSKLKRL--------PEISSGNISWLFL 158 (254)
Q Consensus 95 ~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~----~~l~~L~~L~l~~~~~~~~~--------p~~~~~~L~~L~l 158 (254)
+.. .+....+++.++++.|.+.. .++..+ ....+++.|.+.+|...... +... ..+..+++
T Consensus 164 l~~--~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~-~~~~el~l 240 (478)
T KOG4308|consen 164 LAA--VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE-SLLRELDL 240 (478)
T ss_pred HHH--HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc-hhhHHHHH
Confidence 222 33445666666666665421 111112 22445666666665433211 1111 11334555
Q ss_pred ccccccc-----cchhhhhc-cccCEEeccCCcCccc----CCccccCCCccCEEEecCCCC
Q 042890 159 RGIAIEE-----LPSSIERQ-LRLSWLDLSDCKRLKS----LPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 159 ~~~~~~~-----l~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~ 210 (254)
..|.+.. +.+.+..+ ..++.++++.|++.+. ....+..+++++.+.++.|.+
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 5555441 22233333 3456666666665542 222333445566666655544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=0.022 Score=43.04 Aligned_cols=83 Identities=22% Similarity=0.191 Sum_probs=51.9
Q ss_pred CCcCeEeccccccccc-chhhhhccccCEEeccCCcCccc-CCcccc-CCCccCEEEecCCCCCcc-cCccccCCCCCcE
Q 042890 151 GNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKS-LPSSLY-RLKSLGILDLHGCSNLQR-LPECLGQLSSPIT 226 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~-~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 226 (254)
..++.++.+++.|... -..+..++.++.|.+.+|+-.+. -.+.++ ..++|+.|++++|.-++. -...+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 5566777777765521 23355667778888887765442 111122 346899999998865543 3345667788888
Q ss_pred EeccCCC
Q 042890 227 CNLAKTN 233 (254)
Q Consensus 227 L~l~~n~ 233 (254)
|.+.+-.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8876543
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.78 E-value=0.12 Score=25.01 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=16.1
Q ss_pred CCCCcEEeccCCCCCCCChhh
Q 042890 221 LSSPITCNLAKTNIERIPESI 241 (254)
Q Consensus 221 l~~L~~L~l~~n~l~~l~~~~ 241 (254)
+++|+.|++.+|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888888888888887654
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.78 E-value=0.12 Score=25.01 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=16.1
Q ss_pred CCCCcEEeccCCCCCCCChhh
Q 042890 221 LSSPITCNLAKTNIERIPESI 241 (254)
Q Consensus 221 l~~L~~L~l~~n~l~~l~~~~ 241 (254)
+++|+.|++.+|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 357888888888888887654
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.38 E-value=0.026 Score=49.11 Aligned_cols=15 Identities=53% Similarity=0.798 Sum_probs=7.4
Q ss_pred CCCccCEEEecCCCC
Q 042890 196 RLKSLGILDLHGCSN 210 (254)
Q Consensus 196 ~l~~L~~L~l~~~~~ 210 (254)
.++.|+.+++++|..
T Consensus 293 ~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHG 307 (482)
T ss_pred hcCcccEEeeecCcc
Confidence 344455555555443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.23 E-value=0.00097 Score=57.83 Aligned_cols=184 Identities=21% Similarity=0.119 Sum_probs=112.4
Q ss_pred eeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCC-CCccCCc-ccccEEeccCCcCCCc----cC
Q 042890 49 VKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPN-PTLMPRM-KKLVILNLRGSKSLKS----LP 122 (254)
Q Consensus 49 L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~~-~~L~~L~l~~~~~~~~----~~ 122 (254)
+..+.|.+|.+.. ...+.+..++...+.|+.++++++......... -..+... +.++.|++..|.+... +.
T Consensus 89 l~~L~L~~~~l~~---~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGD---RGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCcccc---chHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence 7778888886543 355667777888888999998876543111110 0022222 5677788888875422 33
Q ss_pred CCCCCCCcccEEeccCCCCCcc--------ccc--cccCCcCeEecccccccc-----cchhhhhccc-cCEEeccCCcC
Q 042890 123 SGIFNLEFLTKLDLSGCSKLKR--------LPE--ISSGNISWLFLRGIAIEE-----LPSSIERQLR-LSWLDLSDCKR 186 (254)
Q Consensus 123 ~~~~~l~~L~~L~l~~~~~~~~--------~p~--~~~~~L~~L~l~~~~~~~-----l~~~~~~~~~-L~~L~l~~n~~ 186 (254)
..+.....++.++++.|.+... ++. ....++++|.+.+|.++. +...+...+. +..+++..|++
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 3444566778888887765321 111 112567788888887661 2233444444 56688888876
Q ss_pred ccc----CCccccCC-CccCEEEecCCCCCcc----cCccccCCCCCcEEeccCCCCC
Q 042890 187 LKS----LPSSLYRL-KSLGILDLHGCSNLQR----LPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 187 ~~~----~~~~l~~l-~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
.+. ..+.+..+ ..++.++++.|++.+. ....+..++.++.+.++.|.+.
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 653 22334455 5678888888877643 3344556778888888888863
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=0.011 Score=44.67 Aligned_cols=83 Identities=12% Similarity=0.160 Sum_probs=44.6
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccC-CcccccEEeccCCcCCCcc-CCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMP-RMKKLVILNLRGSKSLKSL-PSG 124 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~-~~~ 124 (254)
..++.++-+++.+.... + +.+..++.++.+.+.+|.....+.-. .++ ..++|+.|++++|..+..- -..
T Consensus 101 ~~IeaVDAsds~I~~eG---l----e~L~~l~~i~~l~l~~ck~~dD~~L~--~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEG---L----EHLRDLRSIKSLSLANCKYFDDWCLE--RLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred ceEEEEecCCchHHHHH---H----HHHhccchhhhheeccccchhhHHHH--HhcccccchheeeccCCCeechhHHHH
Confidence 44555555555432211 1 12455666666677766655333222 222 3578888888888654322 122
Q ss_pred CCCCCcccEEeccC
Q 042890 125 IFNLEFLTKLDLSG 138 (254)
Q Consensus 125 ~~~l~~L~~L~l~~ 138 (254)
+.++++|+.|.+.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 44566777776655
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.13 E-value=0.22 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=9.4
Q ss_pred CCcceEEEeeccccCCC
Q 042890 17 MPKLRFLKFYSSLFNGE 33 (254)
Q Consensus 17 ~~~L~~L~l~~~~~~~~ 33 (254)
+++|++|++++|.|+++
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 46777788877776433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.42 E-value=0.051 Score=42.24 Aligned_cols=58 Identities=14% Similarity=-0.017 Sum_probs=29.8
Q ss_pred CcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCC
Q 042890 152 NISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 152 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (254)
.+..++++.|.+..+|..+.....++.+++..|. .+..|.+++..+.+++++..++.+
T Consensus 66 ~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 66 RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccCcc
Confidence 3344444445555555555555555555554443 334444555555566655555443
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.13 E-value=0.99 Score=21.99 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.0
Q ss_pred CCCcEEeccCCCCCCCCh
Q 042890 222 SSPITCNLAKTNIERIPE 239 (254)
Q Consensus 222 ~~L~~L~l~~n~l~~l~~ 239 (254)
++|+.|++++|.++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468889999999888886
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.37 E-value=3.2 Score=20.22 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.1
Q ss_pred CCCcEEeccCCCCCCC
Q 042890 222 SSPITCNLAKTNIERI 237 (254)
Q Consensus 222 ~~L~~L~l~~n~l~~l 237 (254)
.+|+.|++..|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5688888888887654
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.40 E-value=1.9 Score=37.90 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=38.8
Q ss_pred CcccccEEeccCCcCC--CccCCCCCCCCcccEEeccCC--CCC--ccccccccCCcCeEeccccccc
Q 042890 103 RMKKLVILNLRGSKSL--KSLPSGIFNLEFLTKLDLSGC--SKL--KRLPEISSGNISWLFLRGIAIE 164 (254)
Q Consensus 103 ~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~--~~~--~~~p~~~~~~L~~L~l~~~~~~ 164 (254)
+.+.+..+++++|++. ..+..-....|+|..|+|++| ... .++++.....|+.|.+.||.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3456777778888742 112222234678888888887 222 2345555577888888888766
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.90 E-value=1.7 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=8.0
Q ss_pred CcceEEEeeccccC
Q 042890 18 PKLRFLKFYSSLFN 31 (254)
Q Consensus 18 ~~L~~L~l~~~~~~ 31 (254)
++|++|++++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35566666666653
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.98 E-value=4.5 Score=19.35 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=5.9
Q ss_pred ccccEEeccCCc
Q 042890 105 KKLVILNLRGSK 116 (254)
Q Consensus 105 ~~L~~L~l~~~~ 116 (254)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 345555555543
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=63.90 E-value=0.26 Score=38.44 Aligned_cols=80 Identities=23% Similarity=0.177 Sum_probs=55.8
Q ss_pred CeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCC
Q 042890 154 SWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTN 233 (254)
Q Consensus 154 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 233 (254)
+.++++.|.+..+-..++.++.+..|+++.|. ....|..++....+..++...| ..+..|.+++..++++.++..++.
T Consensus 45 tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 45 TVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred eeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhhccCc
Confidence 33444444433444456667788899999876 4456666777777777877664 446678888899999999998888
Q ss_pred CC
Q 042890 234 IE 235 (254)
Q Consensus 234 l~ 235 (254)
+.
T Consensus 123 ~~ 124 (326)
T KOG0473|consen 123 FF 124 (326)
T ss_pred ch
Confidence 64
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=62.30 E-value=4.5 Score=35.71 Aligned_cols=33 Identities=30% Similarity=0.187 Sum_probs=14.1
Q ss_pred CcCeEecccccccc---cchhhhhccccCEEeccCC
Q 042890 152 NISWLFLRGIAIEE---LPSSIERQLRLSWLDLSDC 184 (254)
Q Consensus 152 ~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~n 184 (254)
.+..+.+++|++-. +....+..++|..|+|++|
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34444445544332 2222333445555555554
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=28.05 E-value=4.4e+02 Score=23.53 Aligned_cols=121 Identities=10% Similarity=-0.095 Sum_probs=54.1
Q ss_pred cccCCCCcceEEEeeccccCCCccCc--ccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcc--cccceehhh
Q 042890 12 NTFTKMPKLRFLKFYSSLFNGENKCK--MSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRY--SKLNQIIHA 86 (254)
Q Consensus 12 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~--~~L~~l~l~ 86 (254)
-++++.+++...+++.+...-..... ...-+.+.. .++ +|++.++.+ |...+..+..++..- +.=-.++++
T Consensus 262 l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~---psE~lks~LLgla~ne~t~g~rldl~ 337 (553)
T KOG4242|consen 262 LAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYT---PSEKLKSMLLGLAENEATLGARLDLR 337 (553)
T ss_pred cccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccC---chhhhhhhhcccccccccccccCChh
Confidence 34456667777777776541110000 000111222 556 667766642 222222221111111 111134455
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCCC--CCCCCcccEEeccC
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSG--IFNLEFLTKLDLSG 138 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~ 138 (254)
.|......... +-.+-.++++|++++|...+..... +..-+..+.+++++
T Consensus 338 ~cp~~~a~vle--aci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 338 RCPLERAEVLE--ACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred hccccccchhh--ccccceeeeEeeccccccccccccccceeeccccccccccc
Confidence 55543333332 3334456899999988755443321 22334566666665
Done!