Query 042890
Match_columns 254
No_of_seqs 137 out of 2286
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 18:42:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 100.0 1E-27 3.5E-32 197.0 17.7 217 17-253 80-309 (328)
2 3rgz_A Protein brassinosteroid 99.9 1.5E-26 5.2E-31 209.8 19.1 229 9-254 409-713 (768)
3 1ogq_A PGIP-2, polygalacturona 99.9 9E-27 3.1E-31 190.2 11.1 226 10-254 68-300 (313)
4 4fcg_A Uncharacterized protein 99.9 3.1E-25 1.1E-29 182.1 16.3 194 47-254 81-286 (328)
5 3rgz_A Protein brassinosteroid 99.9 4.8E-25 1.6E-29 200.0 18.6 203 41-254 411-689 (768)
6 3v47_A TOLL-like receptor 5B a 99.9 1.1E-24 3.7E-29 186.4 18.3 103 151-253 299-403 (455)
7 2id5_A Lingo-1, leucine rich r 99.9 1.3E-24 4.5E-29 187.1 18.5 236 9-254 71-329 (477)
8 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-25 1.5E-29 180.2 14.5 220 18-254 50-277 (313)
9 4eco_A Uncharacterized protein 99.9 2.4E-25 8.1E-30 198.0 13.5 233 10-254 198-466 (636)
10 3o6n_A APL1; leucine-rich repe 99.9 1.1E-23 3.6E-28 177.0 22.2 224 13-254 64-327 (390)
11 3oja_B Anopheles plasmodium-re 99.9 4.4E-24 1.5E-28 188.6 19.3 226 11-254 68-333 (597)
12 1xku_A Decorin; proteoglycan, 99.9 7.2E-24 2.4E-28 174.2 18.9 222 11-253 69-301 (330)
13 3zyj_A Leucine-rich repeat-con 99.9 6.8E-24 2.3E-28 180.9 19.0 220 18-254 64-288 (440)
14 3v47_A TOLL-like receptor 5B a 99.9 5.8E-24 2E-28 181.9 18.6 239 8-254 44-380 (455)
15 3zyi_A Leucine-rich repeat-con 99.9 1.4E-23 4.7E-28 179.6 20.2 220 18-254 75-299 (452)
16 1xku_A Decorin; proteoglycan, 99.9 1.7E-23 5.7E-28 172.0 19.6 215 18-253 52-271 (330)
17 2z66_A Variable lymphocyte rec 99.9 4.7E-24 1.6E-28 173.4 16.2 220 18-253 28-256 (306)
18 3t6q_A CD180 antigen; protein- 99.9 9E-24 3.1E-28 186.9 19.1 235 9-253 269-531 (606)
19 2id5_A Lingo-1, leucine rich r 99.9 7.6E-24 2.6E-28 182.3 17.7 231 8-254 46-305 (477)
20 2ft3_A Biglycan; proteoglycan, 99.9 9.7E-24 3.3E-28 173.5 17.3 205 12-238 72-280 (332)
21 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-23 4E-28 173.0 17.7 215 18-253 54-272 (332)
22 4eco_A Uncharacterized protein 99.9 3.9E-24 1.3E-28 190.2 15.1 219 13-254 325-596 (636)
23 3vq2_A TLR4, TOLL-like recepto 99.9 8.4E-24 2.9E-28 187.1 16.7 230 13-254 302-554 (606)
24 3o6n_A APL1; leucine-rich repe 99.9 9.7E-24 3.3E-28 177.2 15.9 217 16-254 43-304 (390)
25 1ozn_A Reticulon 4 receptor; N 99.9 6E-23 2.1E-27 165.2 19.5 204 17-235 31-238 (285)
26 3zyi_A Leucine-rich repeat-con 99.9 9.4E-23 3.2E-27 174.4 20.6 212 7-235 88-303 (452)
27 2z66_A Variable lymphocyte rec 99.9 8E-24 2.7E-28 172.0 12.9 213 9-235 43-261 (306)
28 3t6q_A CD180 antigen; protein- 99.9 8.5E-23 2.9E-27 180.6 20.2 235 11-254 294-556 (606)
29 3zyj_A Leucine-rich repeat-con 99.9 8.6E-23 2.9E-27 174.1 19.5 210 8-234 78-291 (440)
30 4fmz_A Internalin; leucine ric 99.9 9.8E-23 3.3E-27 168.4 19.1 223 12-254 104-342 (347)
31 4ecn_A Leucine-rich repeat pro 99.9 9.2E-23 3.1E-27 185.6 20.0 218 13-254 568-836 (876)
32 2z7x_B TOLL-like receptor 1, v 99.9 9.5E-23 3.3E-27 177.2 18.7 125 126-252 321-451 (520)
33 4fmz_A Internalin; leucine ric 99.9 2E-22 6.8E-27 166.5 19.6 214 14-254 62-296 (347)
34 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-23 1.1E-27 181.3 15.5 103 152-254 311-419 (549)
35 2z80_A TOLL-like receptor 2, v 99.9 2.7E-23 9.2E-28 172.3 14.3 231 9-254 67-310 (353)
36 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-22 4.3E-27 163.4 17.3 215 21-254 14-234 (285)
37 3oja_B Anopheles plasmodium-re 99.9 2.1E-22 7.2E-27 177.9 19.3 227 8-254 89-354 (597)
38 4ecn_A Leucine-rich repeat pro 99.9 2.2E-22 7.4E-27 183.2 19.3 236 10-253 507-784 (876)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.8E-22 9.6E-27 175.9 18.8 126 127-253 351-505 (562)
40 3vq2_A TLR4, TOLL-like recepto 99.9 3.5E-22 1.2E-26 176.7 18.2 103 151-253 350-481 (606)
41 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-22 5.9E-27 180.9 16.0 226 11-252 42-303 (680)
42 2z7x_B TOLL-like receptor 1, v 99.9 3.7E-23 1.3E-27 179.8 10.8 82 172-253 322-407 (520)
43 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-21 9E-26 173.3 19.9 155 100-254 449-618 (680)
44 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-23 1.7E-27 168.3 7.8 212 13-253 53-270 (317)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-21 6.7E-26 170.6 18.2 132 102-235 350-510 (562)
46 1o6v_A Internalin A; bacterial 99.9 4.7E-21 1.6E-25 164.5 20.1 144 101-252 173-316 (466)
47 1o6v_A Internalin A; bacterial 99.9 3.2E-21 1.1E-25 165.6 18.8 211 14-254 173-384 (466)
48 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-21 3.9E-26 179.6 16.7 101 153-253 268-370 (844)
49 3j0a_A TOLL-like receptor 5; m 99.9 2.1E-21 7.2E-26 177.8 18.1 87 151-237 290-377 (844)
50 2o6q_A Variable lymphocyte rec 99.9 1.1E-20 3.8E-25 150.9 19.7 199 19-235 17-218 (270)
51 1wwl_A Monocyte differentiatio 99.9 5.5E-23 1.9E-27 167.6 6.1 192 47-254 95-305 (312)
52 1p9a_G Platelet glycoprotein I 99.9 4.1E-21 1.4E-25 155.0 16.5 201 13-235 5-208 (290)
53 2z62_A TOLL-like receptor 4, v 99.9 7E-21 2.4E-25 152.5 17.4 201 18-235 28-237 (276)
54 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-20 4.3E-25 161.3 20.0 190 13-238 59-249 (457)
55 3oja_A Leucine-rich immune mol 99.9 2.9E-22 1E-26 172.8 10.0 212 12-252 52-269 (487)
56 2z63_A TOLL-like receptor 4, v 99.9 9.9E-22 3.4E-26 172.5 13.5 235 10-254 274-527 (570)
57 2o6q_A Variable lymphocyte rec 99.9 1.9E-20 6.6E-25 149.5 18.9 195 47-254 16-214 (270)
58 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-21 1.3E-25 168.2 15.0 90 150-240 333-428 (549)
59 3o53_A Protein LRIM1, AGAP0063 99.9 3.7E-22 1.3E-26 163.1 7.6 213 13-254 29-246 (317)
60 2z63_A TOLL-like receptor 4, v 99.9 6.3E-21 2.2E-25 167.3 15.7 142 9-166 43-192 (570)
61 3oja_A Leucine-rich immune mol 99.9 2.8E-21 9.7E-26 166.6 12.1 210 16-254 32-246 (487)
62 2z80_A TOLL-like receptor 2, v 99.9 5E-21 1.7E-25 158.6 12.8 212 8-235 90-314 (353)
63 3rfs_A Internalin B, repeat mo 99.9 2.7E-20 9.2E-25 148.8 16.5 204 14-244 37-245 (272)
64 2ca6_A RAN GTPase-activating p 99.9 2.1E-23 7E-28 175.0 -1.9 240 11-254 25-312 (386)
65 1h6u_A Internalin H; cell adhe 99.9 5.7E-21 1.9E-25 155.4 12.6 197 14-239 37-234 (308)
66 3rfs_A Internalin B, repeat mo 99.9 7E-21 2.4E-25 152.2 12.8 175 47-235 41-218 (272)
67 1wwl_A Monocyte differentiatio 99.8 3.8E-21 1.3E-25 156.7 11.3 198 16-236 93-310 (312)
68 2z62_A TOLL-like receptor 4, v 99.8 6.7E-20 2.3E-24 146.7 18.2 197 47-254 28-233 (276)
69 3bz5_A Internalin-J, INLJ; leu 99.8 2.6E-20 8.9E-25 159.3 16.0 206 11-254 35-242 (457)
70 1h6u_A Internalin H; cell adhe 99.8 4.1E-20 1.4E-24 150.4 16.4 186 47-254 41-226 (308)
71 2xwt_C Thyrotropin receptor; s 99.8 1.9E-20 6.6E-25 146.8 12.1 194 47-253 31-234 (239)
72 1jl5_A Outer protein YOPM; leu 99.8 3E-19 1E-23 152.6 20.4 129 19-167 132-273 (454)
73 3g06_A SSPH2 (leucine-rich rep 99.8 5E-19 1.7E-23 156.2 21.6 113 129-254 181-293 (622)
74 4glp_A Monocyte differentiatio 99.8 4.3E-20 1.5E-24 150.3 13.4 222 19-254 65-303 (310)
75 1p9a_G Platelet glycoprotein I 99.8 1.5E-19 5.3E-24 145.7 14.3 192 47-254 10-204 (290)
76 3m19_A Variable lymphocyte rec 99.8 1.3E-18 4.3E-23 137.4 17.9 136 100-235 54-192 (251)
77 2xwt_C Thyrotropin receptor; s 99.8 4.8E-19 1.6E-23 138.8 14.5 195 18-233 31-237 (239)
78 3m19_A Variable lymphocyte rec 99.8 9.4E-19 3.2E-23 138.2 16.2 171 78-254 14-188 (251)
79 1jl5_A Outer protein YOPM; leu 99.8 1.5E-18 5.2E-23 148.3 18.3 143 78-238 111-253 (454)
80 4ay9_X Follicle-stimulating ho 99.8 7.2E-19 2.4E-23 145.5 13.1 216 18-254 30-255 (350)
81 2ast_B S-phase kinase-associat 99.8 2.3E-20 8E-25 153.4 2.9 199 18-232 70-282 (336)
82 2ast_B S-phase kinase-associat 99.8 2.3E-20 7.9E-25 153.4 2.4 219 20-254 49-281 (336)
83 4glp_A Monocyte differentiatio 99.8 1.8E-18 6.1E-23 140.8 12.6 202 17-236 90-308 (310)
84 1h6t_A Internalin B; cell adhe 99.8 2.2E-18 7.5E-23 139.0 12.6 170 47-238 46-216 (291)
85 3g06_A SSPH2 (leucine-rich rep 99.8 4.2E-17 1.4E-21 143.9 20.1 215 4-246 63-309 (622)
86 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-20 4.9E-25 161.0 -2.2 235 12-254 107-407 (461)
87 3cvr_A Invasion plasmid antige 99.8 1.5E-17 5.3E-22 145.1 16.0 188 19-246 60-255 (571)
88 3cvr_A Invasion plasmid antige 99.8 2.4E-17 8.1E-22 144.0 16.8 174 47-254 59-239 (571)
89 1h6t_A Internalin B; cell adhe 99.7 2.6E-17 9.1E-22 132.7 15.0 171 14-212 42-214 (291)
90 2ca6_A RAN GTPase-activating p 99.7 3.1E-19 1.1E-23 149.5 3.7 218 13-238 55-319 (386)
91 4g8a_A TOLL-like receptor 4; l 99.7 4.1E-17 1.4E-21 144.5 17.5 198 47-253 371-575 (635)
92 1m9s_A Internalin B; cell inva 99.7 1.3E-17 4.6E-22 146.8 13.8 170 47-238 43-213 (605)
93 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-17 4.2E-22 147.9 12.4 207 15-235 368-580 (635)
94 1z7x_W Ribonuclease inhibitor; 99.7 6.2E-20 2.1E-24 157.0 -2.8 168 14-187 52-240 (461)
95 1m9s_A Internalin B; cell inva 99.7 5.5E-17 1.9E-21 142.9 15.6 172 14-213 39-212 (605)
96 4ezg_A Putative uncharacterize 99.7 1.5E-17 5E-22 126.6 10.3 146 103-253 42-189 (197)
97 3goz_A Leucine-rich repeat-con 99.7 1.3E-19 4.6E-24 150.6 -2.6 235 14-254 18-293 (362)
98 1xeu_A Internalin C; cellular 99.7 3.5E-17 1.2E-21 130.1 11.1 147 75-234 38-184 (263)
99 2o6s_A Variable lymphocyte rec 99.7 7.3E-17 2.5E-21 123.7 12.2 158 47-221 28-188 (208)
100 4ezg_A Putative uncharacterize 99.7 1.4E-16 4.6E-21 121.2 12.1 150 47-235 44-194 (197)
101 2v9t_B SLIT homolog 2 protein 99.7 3.9E-16 1.3E-20 120.7 14.0 147 50-210 14-164 (220)
102 3goz_A Leucine-rich repeat-con 99.7 1.8E-18 6.1E-23 143.8 0.9 220 22-253 2-261 (362)
103 4ay9_X Follicle-stimulating ho 99.7 2E-16 6.7E-21 130.9 13.0 213 21-251 12-232 (350)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 6.6E-16 2.3E-20 119.4 14.9 149 50-210 14-165 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 7.8E-16 2.7E-20 119.0 14.0 150 80-235 13-166 (220)
106 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.2E-21 125.9 9.2 165 76-254 17-181 (263)
107 3e6j_A Variable lymphocyte rec 99.7 2E-15 6.8E-20 117.4 14.9 150 48-211 20-172 (229)
108 2v9t_B SLIT homolog 2 protein 99.7 1.9E-15 6.4E-20 116.9 14.1 149 81-235 14-165 (220)
109 1dce_A Protein (RAB geranylger 99.7 7.3E-19 2.5E-23 153.9 -6.8 192 47-252 349-567 (567)
110 2xot_A Amphoterin-induced prot 99.6 2.2E-15 7.6E-20 125.0 14.3 174 49-235 20-202 (361)
111 2o6s_A Variable lymphocyte rec 99.6 2.6E-15 9.1E-20 114.9 13.6 176 50-245 10-189 (208)
112 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.7E-20 112.1 11.9 136 104-240 23-165 (168)
113 3e6j_A Variable lymphocyte rec 99.6 5.1E-15 1.7E-19 115.1 14.9 129 105-235 40-172 (229)
114 2xot_A Amphoterin-induced prot 99.6 9.7E-16 3.3E-20 127.2 11.4 173 21-211 21-202 (361)
115 2je0_A Acidic leucine-rich nuc 99.6 6.3E-15 2.1E-19 106.8 9.8 127 104-253 16-148 (149)
116 2wfh_A SLIT homolog 2 protein 99.6 2.3E-14 7.9E-19 108.4 12.6 125 107-235 12-139 (193)
117 2je0_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 107.7 8.1 102 151-254 17-122 (149)
118 1dce_A Protein (RAB geranylger 99.6 3E-17 1E-21 143.7 -5.0 171 75-254 346-542 (567)
119 1w8a_A SLIT protein; signaling 99.6 2.3E-14 7.8E-19 108.4 11.3 126 107-235 10-139 (192)
120 2ell_A Acidic leucine-rich nuc 99.5 2.3E-14 7.7E-19 106.0 9.6 130 78-211 24-160 (168)
121 3sb4_A Hypothetical leucine ri 99.5 5.7E-14 1.9E-18 115.1 12.8 170 77-252 100-328 (329)
122 1w8a_A SLIT protein; signaling 99.5 1.1E-13 3.6E-18 104.7 13.1 128 81-214 11-142 (192)
123 3ogk_B Coronatine-insensitive 99.5 1.4E-15 4.8E-20 133.9 2.8 104 151-254 403-522 (592)
124 4b8c_D Glucose-repressible alc 99.5 1.7E-15 5.7E-20 136.4 2.0 132 47-192 224-359 (727)
125 3ogk_B Coronatine-insensitive 99.5 3.6E-15 1.2E-19 131.4 3.6 158 16-182 162-350 (592)
126 1a9n_A U2A', U2A'; complex (nu 99.5 4E-14 1.4E-18 105.5 8.0 132 100-236 14-154 (176)
127 1a9n_A U2A', U2A'; complex (nu 99.5 8.2E-14 2.8E-18 103.8 7.4 129 74-211 15-153 (176)
128 4b8c_D Glucose-repressible alc 99.5 2.6E-14 8.8E-19 128.7 5.1 150 9-184 215-369 (727)
129 2o6r_A Variable lymphocyte rec 99.5 7.3E-13 2.5E-17 98.7 12.0 128 106-236 8-138 (177)
130 2p1m_B Transport inhibitor res 99.4 3.4E-14 1.2E-18 125.1 3.9 67 16-88 154-221 (594)
131 2wfh_A SLIT homolog 2 protein 99.4 1.9E-12 6.6E-17 97.8 13.1 124 81-211 13-139 (193)
132 2p1m_B Transport inhibitor res 99.4 4.6E-15 1.6E-19 130.7 -2.3 197 47-253 289-514 (594)
133 2o6r_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 94.9 13.6 129 80-214 9-140 (177)
134 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.9E-20 115.6 -5.9 154 74-235 14-185 (198)
135 3g39_A Variable lymphocyte rec 99.3 3.2E-12 1.1E-16 94.6 8.7 105 130-235 10-115 (170)
136 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 91.6 11.5 105 106-213 10-117 (170)
137 2r9u_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 91.5 11.6 85 151-235 33-118 (174)
138 2r9u_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 94.2 8.9 100 153-254 14-114 (174)
139 1ds9_A Outer arm dynein; leuci 99.3 1.5E-14 5.3E-19 109.8 -4.8 125 73-204 43-180 (198)
140 4fdw_A Leucine rich hypothetic 99.3 2E-10 6.7E-15 96.4 16.2 145 100-252 221-377 (401)
141 3sb4_A Hypothetical leucine ri 99.2 3.9E-10 1.3E-14 92.2 13.1 99 128-229 225-328 (329)
142 4fdw_A Leucine rich hypothetic 99.1 2.7E-09 9.1E-14 89.6 16.8 202 9-234 171-382 (401)
143 3un9_A NLR family member X1; l 99.1 5.1E-12 1.8E-16 105.1 -0.5 160 47-211 72-252 (372)
144 2ifg_A High affinity nerve gro 99.1 2E-10 6.8E-15 94.5 8.5 102 133-235 12-116 (347)
145 3un9_A NLR family member X1; l 99.1 7.9E-12 2.7E-16 103.9 -0.6 157 77-235 71-252 (372)
146 2ifg_A High affinity nerve gro 98.9 6.4E-09 2.2E-13 85.5 10.3 102 108-212 11-117 (347)
147 4fs7_A Uncharacterized protein 98.8 1.5E-07 5.1E-12 78.7 14.8 219 9-250 153-393 (394)
148 2ra8_A Uncharacterized protein 98.7 1.3E-08 4.5E-13 84.1 5.1 184 47-235 107-320 (362)
149 2ra8_A Uncharacterized protein 98.6 2.8E-08 9.5E-13 82.1 4.9 207 19-233 108-341 (362)
150 4fs7_A Uncharacterized protein 98.5 6.5E-06 2.2E-10 68.7 16.4 80 171-253 294-374 (394)
151 1io0_A Tropomodulin; LRR prote 98.5 8.3E-08 2.8E-12 71.7 3.2 112 124-235 31-164 (185)
152 4gt6_A Cell surface protein; l 98.4 2.2E-05 7.5E-10 65.5 18.2 81 170-253 284-365 (394)
153 1io0_A Tropomodulin; LRR prote 98.4 6.2E-08 2.1E-12 72.4 1.6 111 101-211 32-164 (185)
154 3e4g_A ATP synthase subunit S, 98.2 4.6E-07 1.6E-11 66.5 2.8 89 47-144 61-154 (176)
155 3rw6_A Nuclear RNA export fact 98.2 2.2E-06 7.4E-11 67.5 6.0 80 171-251 167-257 (267)
156 3e4g_A ATP synthase subunit S, 98.1 5.7E-07 1.9E-11 66.1 1.2 85 151-235 61-153 (176)
157 4gt6_A Cell surface protein; l 98.1 0.00042 1.4E-08 57.7 18.8 81 170-253 261-342 (394)
158 4h09_A Hypothetical leucine ri 98.0 0.00094 3.2E-08 55.1 19.1 21 8-28 59-79 (379)
159 3rw6_A Nuclear RNA export fact 97.9 1.7E-05 5.8E-10 62.4 6.0 77 151-229 170-258 (267)
160 4h09_A Hypothetical leucine ri 97.5 0.0084 2.9E-07 49.4 16.3 127 100-231 212-342 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00012 4.2E-09 54.6 3.6 109 126-234 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00083 2.8E-08 50.1 3.7 106 103-208 39-167 (197)
163 3rfe_A Platelet glycoprotein I 96.4 0.0041 1.4E-07 43.1 4.7 54 133-186 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.01 3.6E-07 41.0 5.9 54 155-210 12-67 (130)
165 2lz0_A Uncharacterized protein 64.7 13 0.00043 23.9 4.7 37 170-207 16-52 (100)
166 2lz0_A Uncharacterized protein 56.9 13 0.00045 23.8 3.8 42 191-233 13-54 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1e-27 Score=196.99 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=192.4
Q ss_pred CCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeec
Q 042890 17 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKI 95 (254)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 95 (254)
.+++++|+++++.+ ..+|..+.. ++|++|++++|.++.+|.. +..+++|++|+++++. ...+
T Consensus 80 ~~~l~~L~L~~n~l-------~~lp~~l~~l~~L~~L~L~~n~l~~lp~~--------~~~l~~L~~L~Ls~n~--l~~l 142 (328)
T 4fcg_A 80 QPGRVALELRSVPL-------PQFPDQAFRLSHLQHMTIDAAGLMELPDT--------MQQFAGLETLTLARNP--LRAL 142 (328)
T ss_dssp STTCCEEEEESSCC-------SSCCSCGGGGTTCSEEEEESSCCCCCCSC--------GGGGTTCSEEEEESCC--CCCC
T ss_pred ccceeEEEccCCCc-------hhcChhhhhCCCCCEEECCCCCccchhHH--------HhccCCCCEEECCCCc--cccC
Confidence 47899999999998 456777777 9999999999998888865 7889999999999876 4477
Q ss_pred CCCCccCCcccccEEeccCCcCCCccCCCCCC---------CCcccEEeccCCCCCccccccc--cCCcCeEeccccccc
Q 042890 96 PNPTLMPRMKKLVILNLRGSKSLKSLPSGIFN---------LEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE 164 (254)
Q Consensus 96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~ 164 (254)
|. .+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+. .+|... .++|+.|++++|.++
T Consensus 143 p~--~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 143 PA--SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp CG--GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred cH--HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 76 8999999999999999888888877654 999999999998766 666543 479999999999999
Q ss_pred ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhh
Q 042890 165 ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQ 243 (254)
Q Consensus 165 ~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 243 (254)
.+|..+..+++|+.|++++|.+.+.+|..++++++|+.|++++|+..+.+|..+..+++|+.|++++|.+. .+|..+..
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998875 89999999
Q ss_pred hcccCccccc
Q 042890 244 LFVSGYLLLS 253 (254)
Q Consensus 244 ~~~L~~L~ls 253 (254)
+++|+.+++.
T Consensus 300 L~~L~~l~l~ 309 (328)
T 4fcg_A 300 LPANCIILVP 309 (328)
T ss_dssp SCTTCEEECC
T ss_pred ccCceEEeCC
Confidence 9999988764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.5e-26 Score=209.77 Aligned_cols=229 Identities=21% Similarity=0.264 Sum_probs=161.8
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCC-CCCCcchhhcchhhhcccccceehhh
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~-~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
..+..|..+++|++|++++|.+.+ ..|..+.. ++|++|++.+|.+. .+|. .+..+++|++|+++
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSG------TIPSSLGSLSKLRDLKLWLNMLEGEIPQ--------ELMYVKTLETLILD 474 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECC
T ss_pred ccCHHHhcCCCCCEEECcCCcccC------cccHHHhcCCCCCEEECCCCcccCcCCH--------HHcCCCCceEEEec
Confidence 344556667777777777776632 23334444 66777777777654 3333 35667777777777
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEeccccccc
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE 164 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~ 164 (254)
++.. .+.+|. .+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|... .++|+.|++++|.++
T Consensus 475 ~N~l-~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 475 FNDL-TGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp SSCC-CSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred CCcc-cCcCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 6543 234554 66677777777777777666677767777777777777777666666543 366777777777665
Q ss_pred -ccchhh----------------------------------------------------------------------hhc
Q 042890 165 -ELPSSI----------------------------------------------------------------------ERQ 173 (254)
Q Consensus 165 -~l~~~~----------------------------------------------------------------------~~~ 173 (254)
.+|..+ ..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 444332 224
Q ss_pred cccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhhhcccCcccc
Q 042890 174 LRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQLFVSGYLLL 252 (254)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~l 252 (254)
++|+.|++++|.+.+.+|..++.++.|+.|++++|.+.+.+|..++.+++|+.|++++|.+. .+|..+..+++|++|++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 56788888888888888888888888888888888888888888888888888888888887 78888888888888888
Q ss_pred cC
Q 042890 253 SY 254 (254)
Q Consensus 253 s~ 254 (254)
++
T Consensus 712 s~ 713 (768)
T 3rgz_A 712 SN 713 (768)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=9e-27 Score=190.18 Aligned_cols=226 Identities=16% Similarity=0.177 Sum_probs=166.4
Q ss_pred CCcccCCCCcceEEEeec-cccCCCccCcccccCCCCC-CceeeeeeCCCCCC-CCCCcchhhcchhhhcccccceehhh
Q 042890 10 NPNTFTKMPKLRFLKFYS-SLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~-~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
.+.+|+++++|++|++++ +.+. ...|..+.. ++|++|++++|.+. .+|.. +..+++|++|+++
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--------~~~l~~L~~L~Ls 133 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLV------GPIPPAIAKLTQLHYLYITHTNVSGAIPDF--------LSQIKTLVTLDFS 133 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEE------SCCCGGGGGCTTCSEEEEEEECCEEECCGG--------GGGCTTCCEEECC
T ss_pred cChhHhCCCCCCeeeCCCCCccc------ccCChhHhcCCCCCEEECcCCeeCCcCCHH--------HhCCCCCCEEeCC
Confidence 355677788888888884 6662 234445555 78888888888765 44443 6778888888888
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCC-cccEEeccCCCCCccccccc-cCCcCeEeccccccc
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIE 164 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~ 164 (254)
++.. .+.+|. .+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.+.+..|... ...|+.|++++|.++
T Consensus 134 ~N~l-~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 134 YNAL-SGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210 (313)
T ss_dssp SSEE-ESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred CCcc-CCcCCh--HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence 6552 224555 777888888888888887667777777776 88888888877665655443 234888888888877
Q ss_pred -ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhh
Q 042890 165 -ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESII 242 (254)
Q Consensus 165 -~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~ 242 (254)
..|..+..+++|+.|++++|.+.+.++. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|.. .
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~ 288 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c
Confidence 4555677788888888888887666554 677888888888888887788888888888888888888887 66654 7
Q ss_pred hhcccCcccccC
Q 042890 243 QLFVSGYLLLSY 254 (254)
Q Consensus 243 ~~~~L~~L~ls~ 254 (254)
.+++|+.+++++
T Consensus 289 ~l~~L~~l~l~~ 300 (313)
T 1ogq_A 289 NLQRFDVSAYAN 300 (313)
T ss_dssp TGGGSCGGGTCS
T ss_pred cccccChHHhcC
Confidence 788888887764
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=3.1e-25 Score=182.14 Aligned_cols=194 Identities=26% Similarity=0.338 Sum_probs=175.0
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
..++.|++.+|.++.+|+. +..+++|++|+++++. ...+|. .+..+++|++|++++|.+. .+|..+.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~--------l~~l~~L~~L~L~~n~--l~~lp~--~~~~l~~L~~L~Ls~n~l~-~lp~~l~ 147 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ--------AFRLSHLQHMTIDAAG--LMELPD--TMQQFAGLETLTLARNPLR-ALPASIA 147 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC--------GGGGTTCSEEEEESSC--CCCCCS--CGGGGTTCSEEEEESCCCC-CCCGGGG
T ss_pred cceeEEEccCCCchhcChh--------hhhCCCCCEEECCCCC--ccchhH--HHhccCCCCEEECCCCccc-cCcHHHh
Confidence 7899999999999888876 7789999999999776 447776 8999999999999999865 7888899
Q ss_pred CCCcccEEeccCCCCCccccccc-----------cCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCcccc
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS-----------SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLY 195 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~-----------~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 195 (254)
.+++|+.|++++|+..+.+|... .++|+.|++++|.++.+|..+..+++|+.|++++|.+.+ +|..+.
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~ 226 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIH 226 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchhhc
Confidence 99999999999998888887643 579999999999999999999999999999999999775 666799
Q ss_pred CCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhhhcccCcccccC
Q 042890 196 RLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~ls~ 254 (254)
.+++|+.|++++|+..+.+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 9999999999999999999999999999999999998865 8898999999999999874
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=4.8e-25 Score=199.98 Aligned_cols=203 Identities=23% Similarity=0.234 Sum_probs=165.8
Q ss_pred cCCCCC-CceeeeeeCCCCCC-CCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCC
Q 042890 41 LQDPGF-AEVKYLHWHGYPLK-SLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSL 118 (254)
Q Consensus 41 ~~~l~~-~~L~~L~l~~~~~~-~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 118 (254)
+..+.. ++|++|++++|.+. .+| ..+..+++|++|+++++.. .+.+|. .+..+++|++|++++|.+.
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p--------~~l~~l~~L~~L~L~~n~l-~~~~p~--~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIP--------SSLGSLSKLRDLKLWLNML-EGEIPQ--ELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCC--------GGGGGCTTCCEEECCSSCC-CSCCCG--GGGGCTTCCEEECCSSCCC
T ss_pred CHHHhcCCCCCEEECcCCcccCccc--------HHHhcCCCCCEEECCCCcc-cCcCCH--HHcCCCCceEEEecCCccc
Confidence 334444 66777777776644 233 2477888899999887763 345665 7888999999999999988
Q ss_pred CccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEeccccccc-ccchhhhhccccCEEeccCCcCcccCCcc--
Q 042890 119 KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSSIERQLRLSWLDLSDCKRLKSLPSS-- 193 (254)
Q Consensus 119 ~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~n~~~~~~~~~-- 193 (254)
+.+|..+..+++|+.|++++|.+.+..|... .++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 8888888899999999999998887777654 478999999999988 78888999999999999999877655543
Q ss_pred --------------------------------------------------------------------ccCCCccCEEEe
Q 042890 194 --------------------------------------------------------------------LYRLKSLGILDL 205 (254)
Q Consensus 194 --------------------------------------------------------------------l~~l~~L~~L~l 205 (254)
++.+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 334567899999
Q ss_pred cCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhhhcccCcccccC
Q 042890 206 HGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~ls~ 254 (254)
++|.+.+.+|..++.++.|+.|++++|.+. .+|..++.+++|+.|++++
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 999999999999999999999999999998 8999999999999999985
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.1e-24 Score=186.43 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=58.1
Q ss_pred CCcCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEec
Q 042890 151 GNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNL 229 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 229 (254)
++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 3444555555555533 224455555555555555554444455555666666666666555555555666666666666
Q ss_pred cCCCCCCCCh-hhhhhcccCccccc
Q 042890 230 AKTNIERIPE-SIIQLFVSGYLLLS 253 (254)
Q Consensus 230 ~~n~l~~l~~-~~~~~~~L~~L~ls 253 (254)
++|.++.+|. .+..+++|++|+++
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCccccCCHhHhccCCcccEEEcc
Confidence 6666665543 23556666666655
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=187.08 Aligned_cols=236 Identities=17% Similarity=0.159 Sum_probs=167.9
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCC-CCC-CceeeeeeCCCCCCCCCCcchh----------------hc
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQD-PGF-AEVKYLHWHGYPLKSLPSNDIE----------------QL 70 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~-~~L~~L~l~~~~~~~l~~~~l~----------------~l 70 (254)
+.+.+|+.+++|++|++++|.+ ..++.. +.. ++|++|++++|.+..+++..+. .+
T Consensus 71 ~~~~~~~~l~~L~~L~L~~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 143 (477)
T 2id5_A 71 VEPGAFNNLFNLRTLGLRSNRL-------KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI 143 (477)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC-------CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred eChhhhhCCccCCEEECCCCcC-------CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence 4466788999999999999887 233332 445 7888888888876655432100 00
Q ss_pred -chhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc
Q 042890 71 -WDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS 149 (254)
Q Consensus 71 -~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~ 149 (254)
+..+..+++|++|+++++. ...++. ..+..+++|+.|++++|.+....+..+..+++|+.|++++|.....+|...
T Consensus 144 ~~~~~~~l~~L~~L~l~~n~--l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 144 SHRAFSGLNSLEQLTLEKCN--LTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp CTTSSTTCTTCCEEEEESCC--CSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT
T ss_pred ChhhccCCCCCCEEECCCCc--CcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc
Confidence 1123344445555554433 122221 134455555555555555444334456667777777777776666666544
Q ss_pred c--CCcCeEecccccccccch-hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcE
Q 042890 150 S--GNISWLFLRGIAIEELPS-SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPIT 226 (254)
Q Consensus 150 ~--~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 226 (254)
+ .+|+.|++++|.++.+|. .+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.
T Consensus 221 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp TTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCE
T ss_pred ccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCE
Confidence 2 589999999999999885 5788999999999999988777777899999999999999998888899999999999
Q ss_pred EeccCCCCCCCCh-hhhhhcccCcccccC
Q 042890 227 CNLAKTNIERIPE-SIIQLFVSGYLLLSY 254 (254)
Q Consensus 227 L~l~~n~l~~l~~-~~~~~~~L~~L~ls~ 254 (254)
|++++|.++.++. .+..+++|++|++++
T Consensus 301 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 301 LNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp EECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred EECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 9999999998765 467899999999874
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=4.2e-25 Score=180.24 Aligned_cols=220 Identities=16% Similarity=0.191 Sum_probs=187.3
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCC-CCCC-CCCCcchhhcchhhhcccccceehhhccCCceee
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLK-SLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAK 94 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~-~~~~-~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~ 94 (254)
.+++.|+++++.+.+. ..++..+.. ++|++|++++ |.+. .+|.. +..+++|++|+++++.. .+.
T Consensus 50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~--------l~~l~~L~~L~Ls~n~l-~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPA--------IAKLTQLHYLYITHTNV-SGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGG--------GGGCTTCSEEEEEEECC-EEE
T ss_pred ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChh--------HhcCCCCCEEECcCCee-CCc
Confidence 5899999999998431 135566666 9999999995 6644 55544 88899999999998763 346
Q ss_pred cCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cC-CcCeEeccccccc-ccchhh
Q 042890 95 IPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SG-NISWLFLRGIAIE-ELPSSI 170 (254)
Q Consensus 95 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~-~L~~L~l~~~~~~-~l~~~~ 170 (254)
+|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|... .. .|+.|++++|.++ .+|..+
T Consensus 117 ~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 117 IPD--FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp CCG--GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CCH--HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 776 89999999999999999887889889999999999999998876777654 24 8999999999998 678888
Q ss_pred hhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhhhcccCc
Q 042890 171 ERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQLFVSGY 249 (254)
Q Consensus 171 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~ 249 (254)
..+. |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+. .+|..+..+++|++
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 8877 99999999999888888899999999999999988766655 778999999999999998 88999999999999
Q ss_pred ccccC
Q 042890 250 LLLSY 254 (254)
Q Consensus 250 L~ls~ 254 (254)
|++++
T Consensus 273 L~Ls~ 277 (313)
T 1ogq_A 273 LNVSF 277 (313)
T ss_dssp EECCS
T ss_pred EECcC
Confidence 99874
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=2.4e-25 Score=198.01 Aligned_cols=233 Identities=16% Similarity=0.154 Sum_probs=177.9
Q ss_pred CCcccCCCCcceEEEeeccccCCCccCccc-----------ccCCCC--C-CceeeeeeCCCC-CCCCCCcchhhcchhh
Q 042890 10 NPNTFTKMPKLRFLKFYSSLFNGENKCKMS-----------YLQDPG--F-AEVKYLHWHGYP-LKSLPSNDIEQLWDRV 74 (254)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----------~~~~l~--~-~~L~~L~l~~~~-~~~l~~~~l~~l~~~~ 74 (254)
.|.+|+++++|++|++++|.+.+.+....+ +|..+. . ++|++|++++|. ...+|+. +
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~--------l 269 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF--------L 269 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT--------T
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH--------H
Confidence 567899999999999999999653222122 788888 7 999999999997 4455654 7
Q ss_pred hcccccceehhhccCCcee-ecCCCCccCCc------ccccEEeccCCcCCCccCC--CCCCCCcccEEeccCCCCCccc
Q 042890 75 KRYSKLNQIIHAACHKLIA-KIPNPTLMPRM------KKLVILNLRGSKSLKSLPS--GIFNLEFLTKLDLSGCSKLKRL 145 (254)
Q Consensus 75 ~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~ 145 (254)
..+++|++|+++++....+ .+|. .++.+ ++|++|++++|.+. .+|. .+..+++|+.|++++|.+.+.+
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred hcCCCCCEEECcCCCCCccccchH--HHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 7888999999997763344 5665 56555 88999999998866 7777 7888889999999988877677
Q ss_pred cccc-cCCcCeEecccccccccchhhhhccc-cCEEeccCCcCcccCCccccCCC--ccCEEEecCCCCCcccCcccc--
Q 042890 146 PEIS-SGNISWLFLRGIAIEELPSSIERQLR-LSWLDLSDCKRLKSLPSSLYRLK--SLGILDLHGCSNLQRLPECLG-- 219 (254)
Q Consensus 146 p~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~-- 219 (254)
|... .++|+.|++++|.++.+|..+..+++ |+.|++++|.+. .+|..+...+ +|+.|++++|.+.+..|..+.
T Consensus 347 p~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 7332 37888888888888888888888888 888888888866 6676666544 788888888877777776666
Q ss_pred -----CCCCCcEEeccCCCCCCCChhhh-hhcccCcccccC
Q 042890 220 -----QLSSPITCNLAKTNIERIPESII-QLFVSGYLLLSY 254 (254)
Q Consensus 220 -----~l~~L~~L~l~~n~l~~l~~~~~-~~~~L~~L~ls~ 254 (254)
.+++|+.|++++|.+..+|..+. .+++|++|++++
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 66778888888888877776544 377777777753
No 10
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-23 Score=176.97 Aligned_cols=224 Identities=12% Similarity=0.087 Sum_probs=137.0
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCc
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKL 91 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~ 91 (254)
.|..+++|++|++++|.+. ...+..+.. ++|++|++.+|.++.+++. .+..+++|++|+++++.
T Consensus 64 ~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~~n~-- 128 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPH-------VFQNVPLLTVLVLERND-- 128 (390)
T ss_dssp HHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSSC--
T ss_pred HhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHH-------HhcCCCCCCEEECCCCc--
Confidence 3455566666666666551 111223344 5566666666555554432 13444555555555443
Q ss_pred eeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcc---------------------------
Q 042890 92 IAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--------------------------- 144 (254)
Q Consensus 92 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--------------------------- 144 (254)
...++. ..|..+++|++|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 129 l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L 207 (390)
T 3o6n_A 129 LSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207 (390)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSC
T ss_pred cCcCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcc
Confidence 223332 1234455555555555544333333444455555555554432211
Q ss_pred ------------ccccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCc
Q 042890 145 ------------LPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQ 212 (254)
Q Consensus 145 ------------~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 212 (254)
.|.....+|+.|++++|.++.. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 208 EELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp SEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred eEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence 1122224566777777776655 357778899999999998888778888899999999999987654
Q ss_pred ccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 213 RLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 213 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
++..+..+++|+.|++++|.+..+|..+..+++|++|++++
T Consensus 287 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 287 -LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp -EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS
T ss_pred -cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCC
Confidence 45555678899999999999988888888889999888764
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.4e-24 Score=188.61 Aligned_cols=226 Identities=12% Similarity=0.078 Sum_probs=154.8
Q ss_pred CcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccC
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACH 89 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~ 89 (254)
+..|+.+++|++|++++|.+. ...+..+.. ++|++|++++|.++.+++. .+..+++|++|+++++.
T Consensus 68 ~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~~n~ 134 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPH-------VFQNVPLLTVLVLERND 134 (597)
T ss_dssp THHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSSC
T ss_pred HHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCcCCCCCHH-------HHcCCCCCCEEEeeCCC
Confidence 334556677777777777762 122234455 7777777777776666543 24566677777777554
Q ss_pred CceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccc------------------------
Q 042890 90 KLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL------------------------ 145 (254)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~------------------------ 145 (254)
...+|. ..|..+++|++|++++|.+.+..|..+..+++|+.|++++|.+...-
T Consensus 135 --l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~ 211 (597)
T 3oja_B 135 --LSSLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI 211 (597)
T ss_dssp --CCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCT
T ss_pred --CCCCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCc
Confidence 334443 13466677777777777655555555666667777777666543211
Q ss_pred ---------------cccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCC
Q 042890 146 ---------------PEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 146 ---------------p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (254)
+.....+|+.|++++|.++.. ..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus 212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred hhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 111123456666666666653 4577888999999999998888888899999999999999877
Q ss_pred CcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 211 LQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
.+ +|..+..+++|+.|++++|.+..+|..+..+++|++|++++
T Consensus 291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 291 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS
T ss_pred CC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCC
Confidence 55 45666778999999999999999998888899999988864
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=7.2e-24 Score=174.15 Aligned_cols=222 Identities=16% Similarity=0.143 Sum_probs=136.9
Q ss_pred CcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccC
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACH 89 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~ 89 (254)
+.+|+.+++|++|++++|.+. ...+..+.. ++|++|++++|.++.+|.. + .++|++|+++++.
T Consensus 69 ~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--------~--~~~L~~L~l~~n~ 132 (330)
T 1xku_A 69 DGDFKNLKNLHTLILINNKIS------KISPGAFAPLVKLERLYLSKNQLKELPEK--------M--PKTLQELRVHENE 132 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCC------CBCTTTTTTCTTCCEEECCSSCCSBCCSS--------C--CTTCCEEECCSSC
T ss_pred hhhhccCCCCCEEECCCCcCC------eeCHHHhcCCCCCCEEECCCCcCCccChh--------h--cccccEEECCCCc
Confidence 335556666666666666651 112334444 6666666666666555543 1 2566666666554
Q ss_pred CceeecCCCCccCCcccccEEeccCCcCCC--ccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEeccccccccc-
Q 042890 90 KLIAKIPNPTLMPRMKKLVILNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL- 166 (254)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l- 166 (254)
...++. ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. .+|....++|+.|++++|.++.+
T Consensus 133 --l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 133 --ITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVD 208 (330)
T ss_dssp --CCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCCEEC
T ss_pred --ccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCCCcCCccC
Confidence 223321 145667777777777776532 34555666777777777776543 34444446777777777777755
Q ss_pred chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhh----
Q 042890 167 PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESII---- 242 (254)
Q Consensus 167 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---- 242 (254)
|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++....
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence 455777777888888877776665556777777888888776554 566667777778888888877776553221
Q ss_pred ---hhcccCccccc
Q 042890 243 ---QLFVSGYLLLS 253 (254)
Q Consensus 243 ---~~~~L~~L~ls 253 (254)
..++++.++++
T Consensus 288 ~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 288 YNTKKASYSGVSLF 301 (330)
T ss_dssp CCTTSCCCSEEECC
T ss_pred cccccccccceEee
Confidence 23555566554
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=6.8e-24 Score=180.90 Aligned_cols=220 Identities=20% Similarity=0.211 Sum_probs=163.0
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecC
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIP 96 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 96 (254)
+++++|++++|.+. ...+..+.. ++|++|++++|.++.++.. .+..+++|++|+++++. ...++
T Consensus 64 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~-------~~~~l~~L~~L~L~~n~--l~~~~ 128 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIG-------AFNGLANLNTLELFDNR--LTTIP 128 (440)
T ss_dssp TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCEECGG-------GGTTCSSCCEEECCSSC--CSSCC
T ss_pred CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCccChh-------hccCCccCCEEECCCCc--CCeeC
Confidence 46888888888872 222344555 8888888888877766532 36678888888888665 34444
Q ss_pred CCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccchhhhhc
Q 042890 97 NPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIERQ 173 (254)
Q Consensus 97 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~~~~~~~ 173 (254)
. ..|..+++|++|++++|.+....+..+..+++|+.|++++|+....++... ..+|+.|++++|.++.+|. +..+
T Consensus 129 ~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l 206 (440)
T 3zyj_A 129 N-GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPL 206 (440)
T ss_dssp T-TTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTC
T ss_pred H-hHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCC
Confidence 2 257788888888888887654445567778888888888877666665532 3678888888888887774 6677
Q ss_pred cccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh-hhhhhcccCcccc
Q 042890 174 LRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE-SIIQLFVSGYLLL 252 (254)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l 252 (254)
++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|.++.++. .+..+++|+.|++
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 888888888888777777778888888888888888777777778888888888888888886654 3566788888877
Q ss_pred cC
Q 042890 253 SY 254 (254)
Q Consensus 253 s~ 254 (254)
++
T Consensus 287 ~~ 288 (440)
T 3zyj_A 287 HH 288 (440)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=5.8e-24 Score=181.89 Aligned_cols=239 Identities=19% Similarity=0.151 Sum_probs=155.5
Q ss_pred eeCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchh------h-----------
Q 042890 8 RLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIE------Q----------- 69 (254)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~------~----------- 69 (254)
.+.+.+|+++++|++|++++|.+.+. ..+..+.. ++|++|++++|.+..+++..+. .
T Consensus 44 ~~~~~~~~~l~~L~~L~L~~n~~~~~-----i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 118 (455)
T 3v47_A 44 ELNETSFSRLQDLQFLKVEQQTPGLV-----IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA 118 (455)
T ss_dssp EECTTTTSSCTTCCEEECCCCSTTCE-----ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH
T ss_pred cCChhHhccCccccEEECcCCcccce-----ECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc
Confidence 34466777888888888888776211 11334555 7777777777766554322000 0
Q ss_pred cch--hhhcccccceehhhccCCceeec-CCCCccCCcccccEEeccCCcCCCccCCCCCC-------------------
Q 042890 70 LWD--RVKRYSKLNQIIHAACHKLIAKI-PNPTLMPRMKKLVILNLRGSKSLKSLPSGIFN------------------- 127 (254)
Q Consensus 70 l~~--~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------- 127 (254)
++. .+..+++|++|+++++. ...+ +. ..+..+++|++|++++|.+.+..+..+..
T Consensus 119 ~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 119 VLSGNFFKPLTSLEMLVLRDNN--IKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp HHHSSTTTTCTTCCEEECCSSB--CCSCCCC-GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred ccCcccccCcccCCEEECCCCc--cCccCcc-cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence 001 14445555555555443 2222 21 01455666666666666544433332222
Q ss_pred ---------------CCcccEEeccCCCCCcccccc-----------------------------------------ccC
Q 042890 128 ---------------LEFLTKLDLSGCSKLKRLPEI-----------------------------------------SSG 151 (254)
Q Consensus 128 ---------------l~~L~~L~l~~~~~~~~~p~~-----------------------------------------~~~ 151 (254)
+++|+.|++++|.+.+..|.. ...
T Consensus 196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (455)
T 3v47_A 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275 (455)
T ss_dssp STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence 245555566555433211110 013
Q ss_pred CcCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEecc
Q 042890 152 NISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLA 230 (254)
Q Consensus 152 ~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 230 (254)
+++.+++++|.++.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 677777777777754 5568889999999999999888878889999999999999998877778888999999999999
Q ss_pred CCCCCCC-ChhhhhhcccCcccccC
Q 042890 231 KTNIERI-PESIIQLFVSGYLLLSY 254 (254)
Q Consensus 231 ~n~l~~l-~~~~~~~~~L~~L~ls~ 254 (254)
+|.+..+ |..+..+++|++|++++
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcccccChhhccccccccEEECCC
Confidence 9999855 77888999999999874
No 15
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.4e-23 Score=179.62 Aligned_cols=220 Identities=20% Similarity=0.189 Sum_probs=162.6
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecC
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIP 96 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 96 (254)
+++++|++++|.+. ...+..+.. ++|++|++++|.++.++.. .+..+++|++|+++++. ...++
T Consensus 75 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-------~~~~l~~L~~L~L~~n~--l~~~~ 139 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVG-------AFNGLASLNTLELFDNW--LTVIP 139 (452)
T ss_dssp TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEECCSSC--CSBCC
T ss_pred CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChh-------hccCcccCCEEECCCCc--CCccC
Confidence 46888888888872 223445566 8888888888877766532 36677888888888665 34444
Q ss_pred CCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccchhhhhc
Q 042890 97 NPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIERQ 173 (254)
Q Consensus 97 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~~~~~~~ 173 (254)
. ..|..+++|++|++++|.+....+..+..+++|+.|++++|+..+.++... ..+|++|++++|.++.+|. +..+
T Consensus 140 ~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l 217 (452)
T 3zyi_A 140 S-GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPL 217 (452)
T ss_dssp T-TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTC
T ss_pred h-hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-cccc
Confidence 2 257778888888888887654444567778888888888877666666532 3678888888888887763 6677
Q ss_pred cccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh-hhhhhcccCcccc
Q 042890 174 LRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE-SIIQLFVSGYLLL 252 (254)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l 252 (254)
++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|++|++
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 788888888888777777778888888888888888777777778888888888888888886654 3567788888877
Q ss_pred cC
Q 042890 253 SY 254 (254)
Q Consensus 253 s~ 254 (254)
++
T Consensus 298 ~~ 299 (452)
T 3zyi_A 298 HH 299 (452)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.7e-23 Score=171.98 Aligned_cols=215 Identities=16% Similarity=0.136 Sum_probs=140.4
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecC
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIP 96 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 96 (254)
+++++|++++|.+.+ ..+..+.. ++|++|++++|.++.+.+. ++..+++|++|+++++. ...+|
T Consensus 52 ~~l~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~Ls~n~--l~~l~ 116 (330)
T 1xku_A 52 PDTALLDLQNNKITE------IKDGDFKNLKNLHTLILINNKISKISPG-------AFAPLVKLERLYLSKNQ--LKELP 116 (330)
T ss_dssp TTCCEEECCSSCCCC------BCTTTTTTCTTCCEEECCSSCCCCBCTT-------TTTTCTTCCEEECCSSC--CSBCC
T ss_pred CCCeEEECCCCcCCE------eChhhhccCCCCCEEECCCCcCCeeCHH-------HhcCCCCCCEEECCCCc--CCccC
Confidence 467777777777621 11223455 7777777777776655321 25667777777777655 34555
Q ss_pred CCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCc--cccccc--cCCcCeEecccccccccchhhhh
Q 042890 97 NPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS--SGNISWLFLRGIAIEELPSSIER 172 (254)
Q Consensus 97 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~--~~~L~~L~l~~~~~~~l~~~~~~ 172 (254)
. .+. ++|++|++++|.+....+..+.++++|+.|++++|.... ..+... .++|+.|++++|.++.+|..+.
T Consensus 117 ~--~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~- 191 (330)
T 1xku_A 117 E--KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP- 191 (330)
T ss_dssp S--SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-
T ss_pred h--hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc-
Confidence 3 332 677777777777554444456677777777777766532 222211 3677777777777777665443
Q ss_pred ccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccc
Q 042890 173 QLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLL 252 (254)
Q Consensus 173 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l 252 (254)
++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+..+|.++..+++|++|++
T Consensus 192 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 -PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270 (330)
T ss_dssp -TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred -ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence 6777777777776666666677777777777777776666666667777777777777777777777777777777776
Q ss_pred c
Q 042890 253 S 253 (254)
Q Consensus 253 s 253 (254)
+
T Consensus 271 ~ 271 (330)
T 1xku_A 271 H 271 (330)
T ss_dssp C
T ss_pred C
Confidence 5
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=4.7e-24 Score=173.40 Aligned_cols=220 Identities=17% Similarity=0.131 Sum_probs=130.6
Q ss_pred CcceEEEeeccccCCCccCcccccCC-CCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeec
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQD-PGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKI 95 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 95 (254)
++|++|++++|.+ ..++.. +.. ++|++|++++|.++.+.. .+..+..+++|++|+++++. ...+
T Consensus 28 ~~l~~L~L~~n~l-------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~L~~L~Ls~n~--i~~l 93 (306)
T 2z66_A 28 SSATRLELESNKL-------QSLPHGVFDKLTQLTKLSLSSNGLSFKGC-----CSQSDFGTTSLKYLDLSFNG--VITM 93 (306)
T ss_dssp TTCCEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSCCCEEEE-----EEHHHHSCSCCCEEECCSCS--EEEE
T ss_pred CCCCEEECCCCcc-------CccCHhHhhccccCCEEECCCCccCcccC-----cccccccccccCEEECCCCc--cccC
Confidence 4677777777776 233333 344 777777777776553310 11224456667777776554 3445
Q ss_pred CCCCccCCcccccEEeccCCcCCCccC-CCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccc--cchhh
Q 042890 96 PNPTLMPRMKKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE--LPSSI 170 (254)
Q Consensus 96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~--l~~~~ 170 (254)
+. .+..+++|++|++++|.+....+ ..+..+++|+.|++++|......+... .++|+.|++++|.++. +|..+
T Consensus 94 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 94 SS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EE--EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred hh--hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 54 56666677777777666433322 345566667777776665544433322 3566666666666653 55556
Q ss_pred hhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCC-CChhhhhhc-ccC
Q 042890 171 ERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIER-IPESIIQLF-VSG 248 (254)
Q Consensus 171 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~-~L~ 248 (254)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.. .+..+..++ +|+
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~ 251 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 251 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence 666667777777666665555566666666777776666655555556666666777776666653 344455553 666
Q ss_pred ccccc
Q 042890 249 YLLLS 253 (254)
Q Consensus 249 ~L~ls 253 (254)
+|+++
T Consensus 252 ~L~L~ 256 (306)
T 2z66_A 252 FLNLT 256 (306)
T ss_dssp EEECT
T ss_pred EEEcc
Confidence 66665
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=9e-24 Score=186.86 Aligned_cols=235 Identities=17% Similarity=0.088 Sum_probs=148.6
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhh-----------------c
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQ-----------------L 70 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~-----------------l 70 (254)
+.+.+|+.+++|++|++++|.+ ..+|..+.. ++|++|++.+|.++.+++..+.. +
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l-------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHL-------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCC-------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBC
T ss_pred cCHHHhccccCCCEEeccCCcc-------CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccccc
Confidence 4455688889999999999887 356666766 88999999988877654321110 1
Q ss_pred c-hhhhcccccceehhhccCCceee-cCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc
Q 042890 71 W-DRVKRYSKLNQIIHAACHKLIAK-IPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI 148 (254)
Q Consensus 71 ~-~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 148 (254)
+ ..+..+++|++|+++++...... .+. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|......+..
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTT--TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred chhhhhccCcCCEEECCCCccccccCcch--hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 1 12445555666665554422111 133 5556666666666666654444555666666777777666554443332
Q ss_pred ---ccCCcCeEeccccccccc-chhhhhccccCEEeccCCcCccc---CCccccCCCccCEEEecCCCCCcccCccccCC
Q 042890 149 ---SSGNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKS---LPSSLYRLKSLGILDLHGCSNLQRLPECLGQL 221 (254)
Q Consensus 149 ---~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 221 (254)
..++|+.|++++|.++.. |..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..+..+
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 499 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence 135677777777776643 44466677777777777776552 22346677777777777777766667777777
Q ss_pred CCCcEEeccCCCCC-CCChhhhhhcccCccccc
Q 042890 222 SSPITCNLAKTNIE-RIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 222 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~ls 253 (254)
++|+.|++++|.+. ..|..+..+++| .|+++
T Consensus 500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~ 531 (606)
T 3t6q_A 500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA 531 (606)
T ss_dssp TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC
T ss_pred cCCCEEECCCCccCcCChhHhCccccc-EEECc
Confidence 77777777777776 345667777777 66665
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=7.6e-24 Score=182.32 Aligned_cols=231 Identities=18% Similarity=0.161 Sum_probs=154.5
Q ss_pred eeCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhh
Q 042890 8 RLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
.+.+.+|..+++|++|++++|.+. ...+..+.. ++|++|++++|.++.+|.. .+..+++|++|+++
T Consensus 46 ~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 46 TLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLKLIPLG-------VFTGLSNLTKLDIS 112 (477)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCTT-------SSTTCTTCCEEECT
T ss_pred eECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCCccCcc-------cccCCCCCCEEECC
Confidence 445667888899999999988872 233555666 8899999999888877753 25667788888888
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc--ccCCcCeEeccccccc
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIE 164 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~ 164 (254)
++.. ....+. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+.. ..++|+.|++.+|.++
T Consensus 113 ~n~i-~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 113 ENKI-VILLDY--MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp TSCC-CEECTT--TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCcc-ccCChh--HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 6653 222343 6777788888888887765555666777777888888776644322211 1256666666666655
Q ss_pred ccch-hhhhccc------------------------cCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCcccc
Q 042890 165 ELPS-SIERQLR------------------------LSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLG 219 (254)
Q Consensus 165 ~l~~-~~~~~~~------------------------L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 219 (254)
.++. .+..+++ |+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 4433 2344444 44444444444332223466777888888888777666666777
Q ss_pred CCCCCcEEeccCCCCCCC-ChhhhhhcccCcccccC
Q 042890 220 QLSSPITCNLAKTNIERI-PESIIQLFVSGYLLLSY 254 (254)
Q Consensus 220 ~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~ls~ 254 (254)
.+++|+.|++++|.+..+ |..+..+++|++|++++
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 788888888888888744 56677888888888764
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=9.7e-24 Score=173.54 Aligned_cols=205 Identities=19% Similarity=0.182 Sum_probs=102.1
Q ss_pred cccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCC
Q 042890 12 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHK 90 (254)
Q Consensus 12 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~ 90 (254)
.+|..+++|++|++++|.+. ...+..+.. ++|++|++++|.++.+|.. + .++|++|+++++.
T Consensus 72 ~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--------~--~~~L~~L~l~~n~- 134 (332)
T 2ft3_A 72 DDFKGLQHLYALVLVNNKIS------KIHEKAFSPLRKLQKLYISKNHLVEIPPN--------L--PSSLVELRIHDNR- 134 (332)
T ss_dssp TTTTTCTTCCEEECCSSCCC------EECGGGSTTCTTCCEEECCSSCCCSCCSS--------C--CTTCCEEECCSSC-
T ss_pred hHhhCCCCCcEEECCCCccC------ccCHhHhhCcCCCCEEECCCCcCCccCcc--------c--cccCCEEECCCCc-
Confidence 34444555555555554441 111223333 4455555555544444432 1 1445555555433
Q ss_pred ceeecCCCCccCCcccccEEeccCCcCC--CccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccc-
Q 042890 91 LIAKIPNPTLMPRMKKLVILNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELP- 167 (254)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~- 167 (254)
...++. ..+..+++|++|++++|.+. +..+..+..+ +|+.|++++|.+.. +|.....+|+.|++++|.++.++
T Consensus 135 -i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 135 -IRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp -CCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCT
T ss_pred -cCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCH
Confidence 223321 13445555555555555432 1233334334 55555555544332 33333355666666666666544
Q ss_pred hhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCC
Q 042890 168 SSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIP 238 (254)
Q Consensus 168 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 238 (254)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 34555666666666666655554445666666666666665544 45555556666666666666665443
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.2e-23 Score=173.03 Aligned_cols=215 Identities=16% Similarity=0.159 Sum_probs=127.5
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecC
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIP 96 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 96 (254)
+++++|++++|.+. ...+..+.. ++|++|++++|.++.+++. ++..+++|++|+++++. ...+|
T Consensus 54 ~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~~n~--l~~l~ 118 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNKISKIHEK-------AFSPLRKLQKLYISKNH--LVEIP 118 (332)
T ss_dssp TTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECGG-------GSTTCTTCCEEECCSSC--CCSCC
T ss_pred CCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCccCccCHh-------HhhCcCCCCEEECCCCc--CCccC
Confidence 45667777766651 112234444 6677777777665544321 35566667777776554 33444
Q ss_pred CCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCc--cccccc-cCCcCeEecccccccccchhhhhc
Q 042890 97 NPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS-SGNISWLFLRGIAIEELPSSIERQ 173 (254)
Q Consensus 97 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~-~~~L~~L~l~~~~~~~l~~~~~~~ 173 (254)
. .+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+... ..+|+.|++++|.++.+|..+.
T Consensus 119 ~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~-- 192 (332)
T 2ft3_A 119 P--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP-- 192 (332)
T ss_dssp S--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--
T ss_pred c--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--
Confidence 3 332 667777777766543333445666677777776665432 222111 1256666777776666665433
Q ss_pred cccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCccccc
Q 042890 174 LRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls 253 (254)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..+|..+..+++|++|+++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 56667777776666555555666667777777766666555556666667777777777766666666666677766665
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.9e-24 Score=190.16 Aligned_cols=219 Identities=17% Similarity=0.172 Sum_probs=133.6
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhccc-------------
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYS------------- 78 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~------------- 78 (254)
.|+.+++|++|++++|.+.|. +| .+.. ++|++|++++|.++.+|.. +..++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~------ip-~~~~l~~L~~L~L~~N~l~~lp~~--------l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGK------LP-AFGSEIKLASLNLAYNQITEIPAN--------FCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEE------CC-CCEEEEEESEEECCSSEEEECCTT--------SEEECTTCCEEECCSSCC
T ss_pred hhccCCCCCEEeCcCCcCccc------hh-hhCCCCCCCEEECCCCccccccHh--------hhhhcccCcEEEccCCcC
Confidence 567777788888887776322 22 3333 4555555555544433332 33333
Q ss_pred -------------ccceehhhccCCceeecCCCCccC-------CcccccEEeccCCcCCCccCCC-CCCCCcccEEecc
Q 042890 79 -------------KLNQIIHAACHKLIAKIPNPTLMP-------RMKKLVILNLRGSKSLKSLPSG-IFNLEFLTKLDLS 137 (254)
Q Consensus 79 -------------~L~~l~l~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~ 137 (254)
+|++|+++++.. .+..|. .+. .+++|++|++++|.+. .+|.. +..+++|+.|+++
T Consensus 390 ~~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 390 KYIPNIFDAKSVSVMSAIDFSYNEI-GSVDGK--NFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SSCCSCCCTTCSSCEEEEECCSSCT-TTTTTC--SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred cccchhhhhcccCccCEEECcCCcC-CCcchh--hhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence 455555554432 122222 333 4456666666666543 33332 2235666667776
Q ss_pred CCCCCccccccccC----------CcCeEecccccccccchhhh--hccccCEEeccCCcCcccCCccccCCCccCEEEe
Q 042890 138 GCSKLKRLPEISSG----------NISWLFLRGIAIEELPSSIE--RQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDL 205 (254)
Q Consensus 138 ~~~~~~~~p~~~~~----------~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 205 (254)
+|.+. .+|...+. +|+.|++++|.++.+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 66554 44443321 67777777777777777765 77778888888877666 6777777778888877
Q ss_pred c------CCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 206 H------GCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 206 ~------~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
+ +|.+.+.+|..+..+++|+.|++++|.+..+|..+. ++|++|++++
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~ 596 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKD 596 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCS
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcC
Confidence 3 455566777777777888888888888777776654 6777777764
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=8.4e-24 Score=187.07 Aligned_cols=230 Identities=17% Similarity=0.099 Sum_probs=177.7
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCC-CCCCCCc-------------chhhc---chhhh
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYP-LKSLPSN-------------DIEQL---WDRVK 75 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~-~~~l~~~-------------~l~~l---~~~~~ 75 (254)
.+..+++|++|++++|.+ + .++ .+..++|++|++.+|. +..++.. .+..+ +..+.
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~------~lp-~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-K------QFP-TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-S------SCC-CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred hccccccCCEEEcccccC-c------ccc-cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 466677888888888876 1 222 2211555555555541 1111100 11111 34577
Q ss_pred cccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccC-CCCCCCCcccEEeccCCCCCccccccc--cCC
Q 042890 76 RYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGN 152 (254)
Q Consensus 76 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~ 152 (254)
.+++|++|+++++. ...++. .+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|......|... .++
T Consensus 374 ~~~~L~~L~L~~n~--l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 374 GTNSLRHLDLSFNG--AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp CCSCCCEEECCSCS--EEEECC--CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred cCCcccEeECCCCc--cccchh--hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 88999999999776 556666 88899999999999998766665 568889999999999988777666543 478
Q ss_pred cCeEecccccccc--cchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEecc
Q 042890 153 ISWLFLRGIAIEE--LPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLA 230 (254)
Q Consensus 153 L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 230 (254)
|+.|++++|.++. +|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 9999999999885 67778899999999999999888888889999999999999999988889999999999999999
Q ss_pred CCCCCCCChhhhhhc-ccCcccccC
Q 042890 231 KTNIERIPESIIQLF-VSGYLLLSY 254 (254)
Q Consensus 231 ~n~l~~l~~~~~~~~-~L~~L~ls~ 254 (254)
+|.++.+|..+..++ +|+++++++
T Consensus 530 ~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 530 FNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp TSCCCCEESCGGGSCTTCCEEECCS
T ss_pred CCcCcccCHhHhhhcccCcEEEccC
Confidence 999999988888887 599998864
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=9.7e-24 Score=177.21 Aligned_cols=217 Identities=13% Similarity=0.082 Sum_probs=164.6
Q ss_pred CCCcceEEEeeccccCCCccCcccccCCC-CC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCcee
Q 042890 16 KMPKLRFLKFYSSLFNGENKCKMSYLQDP-GF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIA 93 (254)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~ 93 (254)
.++++++|+++++.+ ..++..+ .. ++|++|++.+|.++.+++. .+..+++|++|+++++. ..
T Consensus 43 ~l~~l~~l~l~~~~l-------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-------~~~~l~~L~~L~L~~n~--l~ 106 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-------RKLPAALLDSFRQVELLNLNDLQIEEIDTY-------AFAYAHTIQKLYMGFNA--IR 106 (390)
T ss_dssp GGCCCSEEEEESCEE-------SEECTHHHHHCCCCSEEECTTSCCCEECTT-------TTTTCTTCCEEECCSSC--CC
T ss_pred ccCCceEEEecCCch-------hhCChhHhcccccCcEEECCCCcccccChh-------hccCCCCcCEEECCCCC--CC
Confidence 468999999999987 4455443 44 8999999999998877653 37789999999999776 34
Q ss_pred ecCCCCccCCcccccEEeccCCcCCCccCC-CCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccchhh
Q 042890 94 KIPNPTLMPRMKKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSI 170 (254)
Q Consensus 94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~~ 170 (254)
.++. ..+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.+....+... .++|+.|++++|.++.++.
T Consensus 107 ~~~~-~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 182 (390)
T 3o6n_A 107 YLPP-HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-- 182 (390)
T ss_dssp CCCT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--
T ss_pred cCCH-HHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--
Confidence 4432 26889999999999999865 4554 45789999999999988765544322 4789999999998886542
Q ss_pred hhcc----------------------------------------ccCEEeccCCcCcccCCccccCCCccCEEEecCCCC
Q 042890 171 ERQL----------------------------------------RLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 171 ~~~~----------------------------------------~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (254)
..++ +|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l 260 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC
Confidence 2223 344444444443332 3467788899999999888
Q ss_pred CcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 211 LQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
.+..|..+..+++|+.|++++|.+..++.....+++|++|++++
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS
T ss_pred CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCC
Confidence 77778888889999999999999988877777888999988874
No 25
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=6e-23 Score=165.24 Aligned_cols=204 Identities=17% Similarity=0.098 Sum_probs=139.4
Q ss_pred CCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeec
Q 042890 17 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKI 95 (254)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 95 (254)
.++|++|+++++.+. ...+..+.. ++|++|++++|.++.+++. .+..+++|++|+++++.......
T Consensus 31 ~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~~l~~~~ 97 (285)
T 1ozn_A 31 PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNVLARIDAA-------AFTGLALLEQLDLSDNAQLRSVD 97 (285)
T ss_dssp CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEEECCSCTTCCCCC
T ss_pred CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCccceeCHh-------hcCCccCCCEEeCCCCCCccccC
Confidence 457788888887762 112233555 7788888888776655322 35667788888887664322222
Q ss_pred CCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccchh-hhh
Q 042890 96 PNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IER 172 (254)
Q Consensus 96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~-~~~ 172 (254)
+. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+... .++|+.|++++|.++.++.. +..
T Consensus 98 ~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 98 PA--TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp TT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred HH--HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 43 67777888888888887665556667777888888888776554333221 36777888888877776654 667
Q ss_pred ccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 173 QLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 173 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 778888888888777766777777788888888877776655566777788888888887764
No 26
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=9.4e-23 Score=174.44 Aligned_cols=212 Identities=19% Similarity=0.177 Sum_probs=176.4
Q ss_pred eeeCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehh
Q 042890 7 LRLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIH 85 (254)
Q Consensus 7 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l 85 (254)
..+.+.+|..+++|++|++++|.+. ...+..+.. ++|++|+|++|.++.++.. .+..+++|++|++
T Consensus 88 ~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L 154 (452)
T 3zyi_A 88 QMIQADTFRHLHHLEVLQLGRNSIR------QIEVGAFNGLASLNTLELFDNWLTVIPSG-------AFEYLSKLRELWL 154 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCSBCCTT-------TSSSCTTCCEEEC
T ss_pred ceECHHHcCCCCCCCEEECCCCccC------CcChhhccCcccCCEEECCCCcCCccChh-------hhcccCCCCEEEC
Confidence 3455778999999999999999982 223455666 9999999999998888754 3677899999999
Q ss_pred hccCCceeecCCCCccCCcccccEEeccCCcCCCccCC-CCCCCCcccEEeccCCCCCccccccc-cCCcCeEecccccc
Q 042890 86 AACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAI 163 (254)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~ 163 (254)
+++. ...++. ..|..+++|+.|++++|...+.++. .+..+++|+.|++++|.+.. +|... ..+|+.|++++|.+
T Consensus 155 ~~N~--l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 155 RNNP--IESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CSCC--CCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCC
T ss_pred CCCC--cceeCH-hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcC
Confidence 9776 445542 3788999999999999766666654 57889999999999987654 45443 58999999999999
Q ss_pred ccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 164 EEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 164 ~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 976 556889999999999999998888888999999999999999888777778889999999999999863
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=8e-24 Score=172.04 Aligned_cols=213 Identities=19% Similarity=0.217 Sum_probs=172.5
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhc
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAA 87 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~ 87 (254)
+.+..|+++++|++|++++|.+.... ..+..+.. ++|++|++++|.+..++.. +..+++|++|++++
T Consensus 43 i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~~~L~~L~Ls~n~i~~l~~~--------~~~l~~L~~L~l~~ 110 (306)
T 2z66_A 43 LPHGVFDKLTQLTKLSLSSNGLSFKG----CCSQSDFGTTSLKYLDLSFNGVITMSSN--------FLGLEQLEHLDFQH 110 (306)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCEEE----EEEHHHHSCSCCCEEECCSCSEEEEEEE--------EETCTTCCEEECTT
T ss_pred cCHhHhhccccCCEEECCCCccCccc----CcccccccccccCEEECCCCccccChhh--------cCCCCCCCEEECCC
Confidence 44456889999999999999983221 11222234 8999999999987766543 77899999999997
Q ss_pred cCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCc-cccccc--cCCcCeEeccccccc
Q 042890 88 CHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK-RLPEIS--SGNISWLFLRGIAIE 164 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~--~~~L~~L~l~~~~~~ 164 (254)
+. ...++....+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+ ..|... .++|+.|++++|.++
T Consensus 111 n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 111 SN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp SE--EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred Cc--ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 65 4444421268889999999999999777777778899999999999988765 345433 479999999999999
Q ss_pred cc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCC-CCcEEeccCCCCC
Q 042890 165 EL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLS-SPITCNLAKTNIE 235 (254)
Q Consensus 165 ~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~ 235 (254)
.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.
T Consensus 189 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 76 56688899999999999998876666788999999999999999888888888884 9999999999985
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=8.5e-23 Score=180.63 Aligned_cols=235 Identities=17% Similarity=0.124 Sum_probs=176.9
Q ss_pred CcccCCCCcceEEEeeccccCCCccCc------------------ccccC-CCCC-CceeeeeeCCCCCCCCCCcchhhc
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCK------------------MSYLQ-DPGF-AEVKYLHWHGYPLKSLPSNDIEQL 70 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------~~~~~-~l~~-~~L~~L~l~~~~~~~l~~~~l~~l 70 (254)
+..|..+++|++|++++|.+.+..+.. ...+. .+.. ++|++|++++|.+..++ ..
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~ 368 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD-----CC 368 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE-----ES
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc-----Cc
Confidence 345667778888888888763221100 01111 1223 45555555555443321 00
Q ss_pred chhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCC-CCCCCCcccEEeccCCCCCccccccc
Q 042890 71 WDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLPEIS 149 (254)
Q Consensus 71 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~ 149 (254)
+..+..+++|++|+++++.. ....+. .+..+++|++|++++|.+.+..+. .+..+++|+.|++++|......|...
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l-~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEP-LSLKTE--AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSC-EEECTT--TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred chhcccCCCCCEEECCCCcC-CcCCHH--HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 23477899999999998763 334455 888999999999999987665554 37889999999999988766655433
Q ss_pred --cCCcCeEecccccccc--c--chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCC
Q 042890 150 --SGNISWLFLRGIAIEE--L--PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSS 223 (254)
Q Consensus 150 --~~~L~~L~l~~~~~~~--l--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 223 (254)
.++|+.|++++|.++. + +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.+++.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 4899999999999874 2 245888999999999999998888888999999999999999998888999999999
Q ss_pred CcEEeccCCCCCCC-ChhhhhhcccCcccccC
Q 042890 224 PITCNLAKTNIERI-PESIIQLFVSGYLLLSY 254 (254)
Q Consensus 224 L~~L~l~~n~l~~l-~~~~~~~~~L~~L~ls~ 254 (254)
| .|++++|.+..+ |..+..+++|+++++++
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 9 999999999865 45688999999999874
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=8.6e-23 Score=174.09 Aligned_cols=210 Identities=19% Similarity=0.196 Sum_probs=175.4
Q ss_pred eeCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhh
Q 042890 8 RLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
.+.+.+|..+++|++|++++|.+. ...+..+.. ++|++|++++|.++.++.. .+..+++|++|+++
T Consensus 78 ~~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 78 IIKVNSFKHLRHLEILQLSRNHIR------TIEIGAFNGLANLNTLELFDNRLTTIPNG-------AFVYLSKLKELWLR 144 (440)
T ss_dssp EECTTTTSSCSSCCEEECCSSCCC------EECGGGGTTCSSCCEEECCSSCCSSCCTT-------TSCSCSSCCEEECC
T ss_pred eeCHHHhhCCCCCCEEECCCCcCC------ccChhhccCCccCCEEECCCCcCCeeCHh-------HhhccccCceeeCC
Confidence 455678999999999999999982 222344566 9999999999999888763 36788999999999
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCC-CCCCCCcccEEeccCCCCCccccccc-cCCcCeEeccccccc
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIE 164 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~ 164 (254)
++. ...++. ..|..+++|++|++++|.....++. .+.++++|+.|++++|.+. .+|... ..+|+.|++++|.++
T Consensus 145 ~N~--i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 145 NNP--IESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp SCC--CCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCC
T ss_pred CCc--ccccCH-HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccC
Confidence 776 445542 3788999999999999766666654 6788999999999998755 455443 589999999999999
Q ss_pred cc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCC
Q 042890 165 EL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 165 ~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 234 (254)
.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 76 55688999999999999999888888899999999999999988877778888999999999999986
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=9.8e-23 Score=168.39 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=151.9
Q ss_pred cccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCC-CCCCCCc--------------chhhcchhhh
Q 042890 12 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYP-LKSLPSN--------------DIEQLWDRVK 75 (254)
Q Consensus 12 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~-~~~l~~~--------------~l~~l~~~~~ 75 (254)
++|..+++|++|++++|.+.+. +. +.. ++|++|++.+|. +..++.. .+..+ ..+.
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~-------~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~ 174 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDI-------SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIA 174 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCC-------GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-GGGG
T ss_pred hHHcCCCcCCEEECcCCcccCc-------hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-hhhc
Confidence 3578889999999999887322 22 334 667777777664 2222211 00000 0144
Q ss_pred cccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCe
Q 042890 76 RYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISW 155 (254)
Q Consensus 76 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~ 155 (254)
.+++|++|+++++. ...++ .+..+++|+.|++++|.+... +. +..+++|+.|++++|.+....+....++|+.
T Consensus 175 ~l~~L~~L~l~~n~--l~~~~---~~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~ 247 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQ--IEDIS---PLASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKITDLSPLANLSQLTW 247 (347)
T ss_dssp GCTTCSEEECTTSC--CCCCG---GGGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred cCCCCCEEEccCCc--ccccc---cccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccCCCcchhcCCCCCE
Confidence 56666666666554 23333 355666777777777664332 22 6677788888888876554433223478888
Q ss_pred EecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 156 LFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 156 L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
|++++|.++.++ .+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 248 L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 248 LEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp EECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred EECCCCccCCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 888888888764 467788888888888876553 35778889999999998887777788888999999999999988
Q ss_pred CCChhhhhhcccCcccccC
Q 042890 236 RIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 236 ~l~~~~~~~~~L~~L~ls~ 254 (254)
.++. +..+++|++|++++
T Consensus 325 ~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 325 DIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp CCGG-GGGCTTCSEESSSC
T ss_pred cccC-hhhhhccceeehhh
Confidence 7765 78889999998874
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=9.2e-23 Score=185.64 Aligned_cols=218 Identities=16% Similarity=0.154 Sum_probs=135.0
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccc-cceehhhccCC
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSK-LNQIIHAACHK 90 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~-L~~l~l~~~~~ 90 (254)
.|+.+++|++|++++|.+ ..+| .+.. ++|+.|++++|.+..+|.. +..+++ |++|+++++.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l-------~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--------l~~l~~~L~~L~Ls~N~- 630 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKV-------RHLE-AFGTNVKLTDLKLDYNQIEEIPED--------FCAFTDQVEGLGFSHNK- 630 (876)
T ss_dssp HHTTCTTCCEEECTTSCC-------CBCC-CCCTTSEESEEECCSSCCSCCCTT--------SCEECTTCCEEECCSSC-
T ss_pred hhhcCCCCCEEECCCCCc-------ccch-hhcCCCcceEEECcCCccccchHH--------HhhccccCCEEECcCCC-
Confidence 566777777777777776 2334 4445 6777777777766665543 455555 6666666544
Q ss_pred ceeecCCCCccCCcc--cccEEeccCCcCCC----------------------------ccCCCC-CCCCcccEEeccCC
Q 042890 91 LIAKIPNPTLMPRMK--KLVILNLRGSKSLK----------------------------SLPSGI-FNLEFLTKLDLSGC 139 (254)
Q Consensus 91 ~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~----------------------------~~~~~~-~~l~~L~~L~l~~~ 139 (254)
...+|. .+...+ +|+.|++++|.+.+ .+|..+ ..+++|+.|++++|
T Consensus 631 -L~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 631 -LKYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp -CCSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred -CCcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence 224443 333332 24455555444333 233222 24566666666665
Q ss_pred CCCccccccccC----------CcCeEecccccccccchhhh--hccccCEEeccCCcCcccCCccccCCCccCEEEecC
Q 042890 140 SKLKRLPEISSG----------NISWLFLRGIAIEELPSSIE--RQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHG 207 (254)
Q Consensus 140 ~~~~~~p~~~~~----------~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 207 (254)
.+. .+|...+. +|+.|++++|.++.+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 544 44443321 67777777777777777665 67777777777777665 666677777777777755
Q ss_pred ------CCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 208 ------CSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 208 ------~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
|.+.+.+|..+.++++|+.|++++|.+..+|..+. ++|+.|++++
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~ 836 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIAD 836 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCS
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCC
Confidence 55566677777777777777777777777776554 5777777764
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=9.5e-23 Score=177.22 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccc---cchhhhhccccCEEeccCCcCcccCCcc-ccCCCc
Q 042890 126 FNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE---LPSSIERQLRLSWLDLSDCKRLKSLPSS-LYRLKS 199 (254)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~---l~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~ 199 (254)
..+++|+.|++++|.+.+..|... .++|+.|++++|.++. +|..+..+++|++|++++|.+.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345566666666665555444322 3566666666666663 3344566666666666666665534432 444555
Q ss_pred cCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccc
Q 042890 200 LGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLL 252 (254)
Q Consensus 200 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l 252 (254)
|+.|++++|.+.+..+..+. ++|+.|++++|.+..+|..+..+++|++|++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 451 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNV 451 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEEC
Confidence 55555555544333333221 3444444444444444444444444444443
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2e-22 Score=166.55 Aligned_cols=214 Identities=17% Similarity=0.175 Sum_probs=125.7
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
|..+++|++|++++|.+.+ .+. +.. ++|++|++++|.++.++. +..+++|++|+++++. .
T Consensus 62 ~~~~~~L~~L~l~~n~i~~-------~~~-~~~l~~L~~L~L~~n~i~~~~~---------~~~l~~L~~L~l~~n~--i 122 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITD-------ISP-LSNLVKLTNLYIGTNKITDISA---------LQNLTNLRELYLNEDN--I 122 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCCCCGG---------GTTCTTCSEEECTTSC--C
T ss_pred hhhcCCccEEEccCCcccc-------chh-hhcCCcCCEEEccCCcccCchH---------HcCCCcCCEEECcCCc--c
Confidence 5567777777777777622 222 444 677777777776655532 3444455555554433 1
Q ss_pred eecCC--------------------CCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCC
Q 042890 93 AKIPN--------------------PTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGN 152 (254)
Q Consensus 93 ~~~~~--------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~ 152 (254)
..++. ...+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+....+-...++
T Consensus 123 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~ 200 (347)
T 4fmz_A 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISPLASLTS 200 (347)
T ss_dssp CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGGGGGCTT
T ss_pred cCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccccccccCCCc
Confidence 22220 0034444555555555554322 222 4455555566665554333222122356
Q ss_pred cCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCC
Q 042890 153 ISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKT 232 (254)
Q Consensus 153 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 232 (254)
++.+++.+|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|
T Consensus 201 L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS
T ss_pred cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCC
Confidence 6666666666665544 5667777888887777555332 67778888888888766542 34677888888888888
Q ss_pred CCCCCChhhhhhcccCcccccC
Q 042890 233 NIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 233 ~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
.+..++ .+..+++|++|++++
T Consensus 276 ~l~~~~-~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 276 QISDIS-VLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCCCCG-GGGGCTTCSEEECCS
T ss_pred ccCCCh-hhcCCCCCCEEECcC
Confidence 887764 477788888888764
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=3.2e-23 Score=181.28 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=69.6
Q ss_pred CcCeEecccccccccchhh-hhccccCEEeccCCcCcccCC---ccccCCCccCEEEecCCCCCcccC--ccccCCCCCc
Q 042890 152 NISWLFLRGIAIEELPSSI-ERQLRLSWLDLSDCKRLKSLP---SSLYRLKSLGILDLHGCSNLQRLP--ECLGQLSSPI 225 (254)
Q Consensus 152 ~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 225 (254)
+++.+++.+|.++.+|..+ ..+++|+.|++++|.+.+.++ ..++.+++|+.|++++|.+.+..+ ..+..+++|+
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~ 390 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence 3445555555555566654 467888888888888776543 235667778888888776654322 3466677888
Q ss_pred EEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 226 TCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 226 ~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
.|++++|.++.+|..+..+++|++|++++
T Consensus 391 ~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp EEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred EEECCCCCCccCChhhcccccccEEECCC
Confidence 88888888777777777777777777653
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=172.28 Aligned_cols=231 Identities=16% Similarity=0.161 Sum_probs=142.2
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhc
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAA 87 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~ 87 (254)
+.+.+|.++++|++|++++|.+. ...+..+.. ++|++|++++|.++.++.. .+..+++|++|++++
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 67 ISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLSNLSSS-------WFKPLSSLTFLNLLG 133 (353)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCSSCCHH-------HHTTCTTCSEEECTT
T ss_pred cCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCcCCcCCHh-------HhCCCccCCEEECCC
Confidence 33446777777777777777762 122334555 7777777777776666542 256677788887776
Q ss_pred cCCceeecCCCCccCCcccccEEeccCCcCCCcc-CCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEeccccccc
Q 042890 88 CHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE 164 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~ 164 (254)
+. ...++....+..+++|++|++++|.....+ +..+..+++|+.|++++|.+.+..|... .++|+.|++++|.++
T Consensus 134 n~--l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 134 NP--YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp CC--CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CC--CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 65 334431125667778888888777433333 4556677778888887776655444332 356777778777777
Q ss_pred ccchh-hhhccccCEEeccCCcCcccCCccc---cCCCccCEEEecCCCCCc----ccCccccCCCCCcEEeccCCCCCC
Q 042890 165 ELPSS-IERQLRLSWLDLSDCKRLKSLPSSL---YRLKSLGILDLHGCSNLQ----RLPECLGQLSSPITCNLAKTNIER 236 (254)
Q Consensus 165 ~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~ 236 (254)
.+|.. +..+++|+.|++++|.+.+..+..+ ...+.++.+++.++.+.+ .+|..+..+++|+.|++++|.++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 76665 3346778888888777665332221 123445555555544432 244556667777777777777776
Q ss_pred CChhh-hhhcccCcccccC
Q 042890 237 IPESI-IQLFVSGYLLLSY 254 (254)
Q Consensus 237 l~~~~-~~~~~L~~L~ls~ 254 (254)
+|..+ ..+++|++|++++
T Consensus 292 i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CCTTTTTTCTTCCEEECCS
T ss_pred cCHHHHhcCCCCCEEEeeC
Confidence 66653 5677777776653
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.3e-22 Score=163.39 Aligned_cols=215 Identities=19% Similarity=0.211 Sum_probs=172.0
Q ss_pred eEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeec-CCCC
Q 042890 21 RFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKI-PNPT 99 (254)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~ 99 (254)
++++.+++.+ ..+|..+ .++|++|++++|.++.++.. .+..+++|++|+++++. ...+ +.
T Consensus 14 ~~~~c~~~~l-------~~ip~~~-~~~l~~L~l~~n~i~~~~~~-------~~~~~~~L~~L~l~~n~--l~~~~~~-- 74 (285)
T 1ozn_A 14 VTTSCPQQGL-------QAVPVGI-PAASQRIFLHGNRISHVPAA-------SFRACRNLTILWLHSNV--LARIDAA-- 74 (285)
T ss_dssp CEEECCSSCC-------SSCCTTC-CTTCSEEECTTSCCCEECTT-------TTTTCTTCCEEECCSSC--CCEECTT--
T ss_pred eEEEcCcCCc-------ccCCcCC-CCCceEEEeeCCcCCccCHH-------HcccCCCCCEEECCCCc--cceeCHh--
Confidence 4566666554 3334322 27899999999988877643 36788999999999775 3344 54
Q ss_pred ccCCcccccEEeccCCc-CCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccchh-hhhccc
Q 042890 100 LMPRMKKLVILNLRGSK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERQLR 175 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~-~~~~~~ 175 (254)
.+..+++|++|++++|. +....+..+..+++|+.|++++|.+....+... .++|++|++++|.++.++.. +..+++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 88899999999999997 444446778889999999999988766545332 47899999999999988765 788899
Q ss_pred cCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh-hhhhhcccCcccccC
Q 042890 176 LSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE-SIIQLFVSGYLLLSY 254 (254)
Q Consensus 176 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~ls~ 254 (254)
|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|++|++++
T Consensus 155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 9999999998777666668889999999999998888888889999999999999999997764 488899999998874
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.1e-22 Score=177.90 Aligned_cols=227 Identities=16% Similarity=0.027 Sum_probs=168.2
Q ss_pred eeCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhh
Q 042890 8 RLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
.+.+.+|+.+++|++|++++|.+.+ ..+..+.. ++|++|++++|.++.+|+. .+..+++|++|+++
T Consensus 89 ~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~-------~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 89 EIDTYAFAYAHTIQKLYMGFNAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRG-------IFHNTPKLTTLSMS 155 (597)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC
T ss_pred CCChHHhcCCCCCCEEECCCCcCCC------CCHHHHcCCCCCCEEEeeCCCCCCCCHH-------HhccCCCCCEEEee
Confidence 3445688999999999999999832 22334556 8999999999998888764 24678888888888
Q ss_pred ccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC-------------------------------------CCC
Q 042890 87 ACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF-------------------------------------NLE 129 (254)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------------------------~l~ 129 (254)
++.. ....+. .+..+++|++|++++|.+.+.....+. ..+
T Consensus 156 ~N~l-~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 156 NNNL-ERIEDD--TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp SSCC-CBCCTT--TTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred CCcC-CCCChh--hhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 7653 222333 677888888888888875432111111 113
Q ss_pred cccEEeccCCCCCccccccccCCcCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCC
Q 042890 130 FLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGC 208 (254)
Q Consensus 130 ~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 208 (254)
+|+.|++++|.+.+...-...++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 4666777776655431112258999999999999865 6678899999999999998766 4556677999999999998
Q ss_pred CCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 209 SNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 209 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
.+. .+|..+..+++|+.|++++|.+..++ +..+++|+.|++++
T Consensus 312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 312 HLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred CCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 776 56777788999999999999998775 66789999998874
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.2e-22 Score=183.20 Aligned_cols=236 Identities=16% Similarity=0.126 Sum_probs=148.4
Q ss_pred CCcccCCCCcceEEEeeccc-cCC-CccCcccc-cCCCCC-CceeeeeeCCCCCCCCCC--c---------------chh
Q 042890 10 NPNTFTKMPKLRFLKFYSSL-FNG-ENKCKMSY-LQDPGF-AEVKYLHWHGYPLKSLPS--N---------------DIE 68 (254)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~-~~~l~~-~~L~~L~l~~~~~~~l~~--~---------------~l~ 68 (254)
.|..|+++++|++|++++|. +.+ ..+..... ...+.. ++|++|++.+|.+..+|. . .+.
T Consensus 507 iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc
Confidence 35678888888888888887 644 21110000 002222 567777777666666655 2 111
Q ss_pred hcchhhhcccccceehhhccCCceeecCCCCccCCccc-ccEEeccCCcCCCccCCCCCCCC--cccEEeccCCCCCccc
Q 042890 69 QLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKK-LVILNLRGSKSLKSLPSGIFNLE--FLTKLDLSGCSKLKRL 145 (254)
Q Consensus 69 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~ 145 (254)
.++ .+..+++|+.|+++++. ...+|. .+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.+.+..
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~--l~~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQ--IEEIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSC--CSCCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred cch-hhcCCCcceEEECcCCc--cccchH--HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence 222 35566777777777655 235665 6777777 778888777754 5666555443 3777777777665544
Q ss_pred cccc-------cCCcCeEecccccccccchhhh-hccccCEEeccCCcCcccCCccccC--------CCccCEEEecCCC
Q 042890 146 PEIS-------SGNISWLFLRGIAIEELPSSIE-RQLRLSWLDLSDCKRLKSLPSSLYR--------LKSLGILDLHGCS 209 (254)
Q Consensus 146 p~~~-------~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~--------l~~L~~L~l~~~~ 209 (254)
|... ..+|+.|++++|.++.+|..+. .+++|+.|++++|.+. .+|..+.. +++|+.|++++|.
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCC
Confidence 3221 1367788888888887777643 6778888888887765 44443222 2377777777776
Q ss_pred CCcccCcccc--CCCCCcEEeccCCCCCCCChhhhhhcccCccccc
Q 042890 210 NLQRLPECLG--QLSSPITCNLAKTNIERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 210 ~~~~~~~~~~--~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls 253 (254)
+. .+|..+. .+++|+.|++++|.+..+|..+..+++|+.|+++
T Consensus 740 L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 740 LT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECC
T ss_pred Cc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECC
Confidence 65 5666665 6777777777777777777777777777777664
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.8e-22 Score=175.92 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=67.3
Q ss_pred CCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccc---hhhhhccccCEEeccCCcCcccCCc-cccCCC--
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELP---SSIERQLRLSWLDLSDCKRLKSLPS-SLYRLK-- 198 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~---~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~-- 198 (254)
.+++|++|++++|.+.+..|... .++|+.|++++|.++.++ ..+..+++|+.|++++|.+.+.+|. .+..++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 34555555555555444333322 245556666666555433 2344555566666666555443332 233333
Q ss_pred --------------------ccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChh-hhhhcccCccccc
Q 042890 199 --------------------SLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPES-IIQLFVSGYLLLS 253 (254)
Q Consensus 199 --------------------~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~ls 253 (254)
+|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|.. +..+++|+.++++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 4555555554433 3444444566666677766666666655 5666666666665
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=3.5e-22 Score=176.68 Aligned_cols=103 Identities=21% Similarity=0.122 Sum_probs=53.5
Q ss_pred CCcCeEeccccccccc---chhhhhccccCEEeccCCcCc-----------------------ccCC-ccccCCCccCEE
Q 042890 151 GNISWLFLRGIAIEEL---PSSIERQLRLSWLDLSDCKRL-----------------------KSLP-SSLYRLKSLGIL 203 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~n~~~-----------------------~~~~-~~l~~l~~L~~L 203 (254)
++|++|++++|.++.+ |..+..+++|+.|++++|.+. +..+ ..+..+++|+.|
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 4555556665555533 455555556666666655533 2222 234444455555
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCCC--CChhhhhhcccCccccc
Q 042890 204 DLHGCSNLQRLPECLGQLSSPITCNLAKTNIER--IPESIIQLFVSGYLLLS 253 (254)
Q Consensus 204 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~ls 253 (254)
++++|.+.+..|..+..+++|+.|++++|.+.. +|..+..+++|++|+++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 481 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECC
Confidence 555554444444555555555555555555542 44455555666665554
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.7e-22 Score=180.94 Aligned_cols=226 Identities=21% Similarity=0.153 Sum_probs=132.9
Q ss_pred CcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccC
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACH 89 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~ 89 (254)
+.+|+++++|++|++++|.+.+. .+..+.. ++|++|++++|.++.+|+. .+..+++|++|+++++.
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~l~~l~~~-------~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKL------EPELCQKLPMLKVLNLQHNELSQLSDK-------TFAFCTNLTELHLMSNS 108 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCC------CTTHHHHCTTCCEEECCSSCCCCCCTT-------TTTTCTTCSEEECCSSC
T ss_pred HHHHhCCCcCcEEECCCCccCcc------CHHHHhcccCcCEEECCCCccCccChh-------hhccCCCCCEEECCCCc
Confidence 34566677777777777766221 2222333 6777777777777666642 25667777777777665
Q ss_pred CceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc----ccCCcCeEecccccccc
Q 042890 90 KLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI----SSGNISWLFLRGIAIEE 165 (254)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~----~~~~L~~L~l~~~~~~~ 165 (254)
...++. ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. ...+|+.|++++|.++.
T Consensus 109 --l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 109 --IQKIKN-NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp --CCCCCS-CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred --cCccCh-hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 234431 26777777888888777766666666667777777777776654433321 12566777777776664
Q ss_pred cch-hhhhc---------------------------cccCEEeccCCcCcccCCccccCCCc--cCEEEecCCCCCcccC
Q 042890 166 LPS-SIERQ---------------------------LRLSWLDLSDCKRLKSLPSSLYRLKS--LGILDLHGCSNLQRLP 215 (254)
Q Consensus 166 l~~-~~~~~---------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~ 215 (254)
+++ .+..+ ++|+.|++++|.+.+..+..+.+++. |+.|++++|.+.+..+
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc
Confidence 432 22221 34455555555555544445555433 6666666666655555
Q ss_pred ccccCCCCCcEEeccCCCCCC-CChhhhhhcccCcccc
Q 042890 216 ECLGQLSSPITCNLAKTNIER-IPESIIQLFVSGYLLL 252 (254)
Q Consensus 216 ~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~l 252 (254)
..+..+++|+.|++++|.+.. .|..+..+++|++|++
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 566666666666666666653 3334555555555544
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=179.84 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=45.1
Q ss_pred hccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCc--ccCccccCCCCCcEEeccCCCCCC-CChh-hhhhccc
Q 042890 172 RQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQ--RLPECLGQLSSPITCNLAKTNIER-IPES-IIQLFVS 247 (254)
Q Consensus 172 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~-l~~~-~~~~~~L 247 (254)
.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.. +|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 34556666666666555555555566666666666655543 334445556666666666666553 5443 3444555
Q ss_pred Cccccc
Q 042890 248 GYLLLS 253 (254)
Q Consensus 248 ~~L~ls 253 (254)
++|+++
T Consensus 402 ~~L~Ls 407 (520)
T 2z7x_B 402 LSLNMS 407 (520)
T ss_dssp CEEECC
T ss_pred CEEECc
Confidence 555544
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=2.6e-21 Score=173.29 Aligned_cols=155 Identities=20% Similarity=0.069 Sum_probs=93.8
Q ss_pred ccCCcccccEEeccCCcCC--CccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccch-------
Q 042890 100 LMPRMKKLVILNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS------- 168 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~------- 168 (254)
.+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+....+... ..+|++|++++|.++.++.
T Consensus 449 ~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 528 (680)
T 1ziw_A 449 SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528 (680)
T ss_dssp TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC
T ss_pred hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc
Confidence 4444455555555554432 3345556666677777777665443322211 3566777777776664421
Q ss_pred --hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChh-hh-hh
Q 042890 169 --SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPES-II-QL 244 (254)
Q Consensus 169 --~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~-~~ 244 (254)
.+..+++|+.|++++|.+....+..+.++++|+.+++++|.+.+..+..|..+++|+.|++++|.++.++.. +. .+
T Consensus 529 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 608 (680)
T 1ziw_A 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608 (680)
T ss_dssp CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH
T ss_pred chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc
Confidence 145666777777777765533333467777777777777766655555666777777777777777766543 33 57
Q ss_pred cccCcccccC
Q 042890 245 FVSGYLLLSY 254 (254)
Q Consensus 245 ~~L~~L~ls~ 254 (254)
++|+++++++
T Consensus 609 ~~L~~l~l~~ 618 (680)
T 1ziw_A 609 RNLTELDMRF 618 (680)
T ss_dssp TTCSEEECTT
T ss_pred cccCEEEccC
Confidence 7777777653
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=4.8e-23 Score=168.35 Aligned_cols=212 Identities=13% Similarity=0.016 Sum_probs=139.1
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCc
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKL 91 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~ 91 (254)
+|..+++|++|++++|.+.+ .+. +.. ++|++|++++|.++.+ ...++|++|+++++..
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~Ls~n~l~~l------------~~~~~L~~L~l~~n~l- 111 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYE-------TLD-LESLSTLRTLDLNNNYVQEL------------LVGPSIETLHAANNNI- 111 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEE-------EEE-ETTCTTCCEEECCSSEEEEE------------EECTTCCEEECCSSCC-
T ss_pred HhhCCCcCCEEECCCCcCCc-------chh-hhhcCCCCEEECcCCccccc------------cCCCCcCEEECCCCcc-
Confidence 45555566666666655521 111 333 5566666666644332 2336677777765542
Q ss_pred eeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccch
Q 042890 92 IAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS 168 (254)
Q Consensus 92 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~~ 168 (254)
..++. ..+++|++|++++|.+....+..+..+++|+.|++++|.+....+... .++|++|++++|.++.++.
T Consensus 112 -~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 112 -SRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp -SEEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred -CCcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 22221 235678888888887666555567778888888888877665444322 3678888888888887654
Q ss_pred hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC--CCChhhhhhcc
Q 042890 169 SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE--RIPESIIQLFV 246 (254)
Q Consensus 169 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~ 246 (254)
.. .+++|+.|++++|.+.+. +..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .++.++..+++
T Consensus 187 ~~-~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 187 QV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp CC-CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred cc-ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 33 467888888888876653 445778888888888887665 46666777888888888888886 56677777777
Q ss_pred cCccccc
Q 042890 247 SGYLLLS 253 (254)
Q Consensus 247 L~~L~ls 253 (254)
|+.++++
T Consensus 264 L~~l~l~ 270 (317)
T 3o53_A 264 VQTVAKQ 270 (317)
T ss_dssp HHHHHHH
T ss_pred ceEEECC
Confidence 7776653
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.9e-21 Score=170.57 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=95.1
Q ss_pred CCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCc--ccccc--ccCCcCeEecccccccc-cchh-hhhc--
Q 042890 102 PRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEI--SSGNISWLFLRGIAIEE-LPSS-IERQ-- 173 (254)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~--~~~~L~~L~l~~~~~~~-l~~~-~~~~-- 173 (254)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+ ..|.. ..++|+.|++++|.++. +|.. +..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 556788888888888777677777788888888888876554 22221 23667777777777664 5432 2222
Q ss_pred --------------------cccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCcc-ccCCCCCcEEeccCC
Q 042890 174 --------------------LRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPEC-LGQLSSPITCNLAKT 232 (254)
Q Consensus 174 --------------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n 232 (254)
++|+.|++++|.+. .+|..+.++++|+.|++++|.+.+ +|.. +..+++|+.+++++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCC
Confidence 46667777766644 566667789999999999988874 5544 889999999999999
Q ss_pred CCC
Q 042890 233 NIE 235 (254)
Q Consensus 233 ~l~ 235 (254)
++.
T Consensus 508 ~~~ 510 (562)
T 3a79_B 508 PWD 510 (562)
T ss_dssp CBC
T ss_pred CcC
Confidence 986
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=4.7e-21 Score=164.50 Aligned_cols=144 Identities=22% Similarity=0.220 Sum_probs=67.3
Q ss_pred cCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEe
Q 042890 101 MPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLD 180 (254)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 180 (254)
+..+++|++|++++|.+. .++ .+..+++|+.|++++|......|....++|+.|++++|.++.++ .+..+++|+.|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVS-DIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCC-CCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEE
Confidence 445556666666666532 222 24555666666666655444333222355555555555555443 244455555555
Q ss_pred ccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccc
Q 042890 181 LSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLL 252 (254)
Q Consensus 181 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l 252 (254)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+..++. +..+++|++|++
T Consensus 250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L 316 (466)
T 1o6v_A 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTL 316 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEEC
T ss_pred CCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEEC
Confidence 55555433222 4444445555554444332221 3334444444444444433322 333344444333
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=3.2e-21 Score=165.56 Aligned_cols=211 Identities=15% Similarity=0.122 Sum_probs=140.7
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
++.+++|++|++++|.+.+. ..+.. ++|++|++++|.+..+++ +..+++|++|+++++. .
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~l~~n~l~~~~~---------~~~l~~L~~L~l~~n~--l 233 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDI--------SVLAKLTNLESLIATNNQISDITP---------LGILTNLDELSLNGNQ--L 233 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG---------GGGCTTCCEEECCSSC--C
T ss_pred hccCCCCCEEECcCCcCCCC--------hhhccCCCCCEEEecCCccccccc---------ccccCCCCEEECCCCC--c
Confidence 44555555666655554111 11233 566666666665544432 3456777777777655 2
Q ss_pred eecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhh
Q 042890 93 AKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIER 172 (254)
Q Consensus 93 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~ 172 (254)
..++ .+..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+....+....++|+.|++++|.++.++. +..
T Consensus 234 ~~~~---~l~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~ 307 (466)
T 1o6v_A 234 KDIG---TLASLTNLTDLDLANNQISNL-AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISN 307 (466)
T ss_dssp CCCG---GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGG
T ss_pred ccch---hhhcCCCCCEEECCCCccccc-hh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hcC
Confidence 3333 566777888888888875443 32 66778888888888765554332234778888888888887665 667
Q ss_pred ccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccc
Q 042890 173 QLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLL 252 (254)
Q Consensus 173 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l 252 (254)
+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...+. +..+++|+.|++
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 382 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL 382 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence 7888888888887766544 66788888888888766553 356778888888888888876554 777888888877
Q ss_pred cC
Q 042890 253 SY 254 (254)
Q Consensus 253 s~ 254 (254)
++
T Consensus 383 ~~ 384 (466)
T 1o6v_A 383 ND 384 (466)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=179.56 Aligned_cols=101 Identities=22% Similarity=0.102 Sum_probs=57.5
Q ss_pred cCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccC
Q 042890 153 ISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAK 231 (254)
Q Consensus 153 L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 231 (254)
++.|++++|.++.+ +..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 44444444444432 22344555566666666655555555566666666666666655555555666666666666666
Q ss_pred CCCCCCCh-hhhhhcccCccccc
Q 042890 232 TNIERIPE-SIIQLFVSGYLLLS 253 (254)
Q Consensus 232 n~l~~l~~-~~~~~~~L~~L~ls 253 (254)
|.+..++. .+..+++|++|+++
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEE
T ss_pred CCCCccChhhhcCCCCCCEEECC
Confidence 66654432 35556666666664
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=177.78 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=46.6
Q ss_pred CCcCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEec
Q 042890 151 GNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNL 229 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 229 (254)
++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+....+..+..+++|+.|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 4555555555555543 233455555555555555554444445555555555555555554444444555555555555
Q ss_pred cCCCCCCC
Q 042890 230 AKTNIERI 237 (254)
Q Consensus 230 ~~n~l~~l 237 (254)
++|.++.+
T Consensus 370 s~N~l~~i 377 (844)
T 3j0a_A 370 RDNALTTI 377 (844)
T ss_dssp ETCCSCCC
T ss_pred CCCCCCcc
Confidence 55555544
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-20 Score=150.86 Aligned_cols=199 Identities=18% Similarity=0.177 Sum_probs=155.5
Q ss_pred cceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCC
Q 042890 19 KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNP 98 (254)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 98 (254)
+.++++++++.+ ..+|..+. ++++.|++++|.++.++.. ++..+++|++|+++++. ...++.
T Consensus 17 ~~~~l~~~~~~l-------~~ip~~~~-~~l~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~--l~~i~~- 78 (270)
T 2o6q_A 17 NKNSVDCSSKKL-------TAIPSNIP-ADTKKLDLQSNKLSSLPSK-------AFHRLTKLRLLYLNDNK--LQTLPA- 78 (270)
T ss_dssp TTTEEECTTSCC-------SSCCSCCC-TTCSEEECCSSCCSCCCTT-------SSSSCTTCCEEECCSSC--CSCCCT-
T ss_pred CCCEEEccCCCC-------CccCCCCC-CCCCEEECcCCCCCeeCHH-------HhcCCCCCCEEECCCCc--cCeeCh-
Confidence 567888888776 33444332 6799999999988877753 36778899999998765 445553
Q ss_pred CccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchh-hhhccc
Q 042890 99 TLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSS-IERQLR 175 (254)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~-~~~~~~ 175 (254)
..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+.. ..++|++|++++|.++.+|.. +..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 25678999999999999866554556778899999999998765544432 247899999999999988765 678899
Q ss_pred cCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 176 LSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 176 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++.+|++.
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 999999999877766666888999999999998887666667888999999999999874
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=5.5e-23 Score=167.64 Aligned_cols=192 Identities=19% Similarity=0.169 Sum_probs=121.2
Q ss_pred CceeeeeeCCCCCC-CCCCcchhhcchhh--hcccccceehhhccCCceeecCCCCccCCc-----ccccEEeccCCcCC
Q 042890 47 AEVKYLHWHGYPLK-SLPSNDIEQLWDRV--KRYSKLNQIIHAACHKLIAKIPNPTLMPRM-----KKLVILNLRGSKSL 118 (254)
Q Consensus 47 ~~L~~L~l~~~~~~-~l~~~~l~~l~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~ 118 (254)
++|++|++++|.++ .+|.. + ..+++|++|+++++. ....|. .+..+ ++|++|++++|.+.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~--------~~~~~l~~L~~L~Ls~N~--l~~~~~--~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPP--------LLEATGPDLNILNLRNVS--WATRDA--WLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCC--------SSSCCSCCCSEEEEESCB--CSSSSS--HHHHHHTTCCTTCCEEEEESCSCC
T ss_pred CCccEEEccCCcccchhHHH--------HHHhcCCCccEEEccCCC--CcchhH--HHHHHHHhhcCCCcEEEeeCCCCc
Confidence 56666666666554 33332 2 456666666666544 222233 44444 67777777777765
Q ss_pred CccCCCCCCCCcccEEeccCCCCCccc--c-c---cccCCcCeEecccccccccch---h-hhhccccCEEeccCCcCcc
Q 042890 119 KSLPSGIFNLEFLTKLDLSGCSKLKRL--P-E---ISSGNISWLFLRGIAIEELPS---S-IERQLRLSWLDLSDCKRLK 188 (254)
Q Consensus 119 ~~~~~~~~~l~~L~~L~l~~~~~~~~~--p-~---~~~~~L~~L~l~~~~~~~l~~---~-~~~~~~L~~L~l~~n~~~~ 188 (254)
+..+..+..+++|++|++++|...+.. + . ...++|++|++++|.++.++. . +..+++|+.|++++|.+.+
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 555566667777777777776654431 1 1 223677777777777774332 2 3455778888888887766
Q ss_pred cCC-ccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 189 SLP-SSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 189 ~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
..+ ..+..+++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|. +..+++|++|++++
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred ccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 553 34556777888888887665 5565554 678888888888877765 77778888877764
No 52
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=4.1e-21 Score=154.97 Aligned_cols=201 Identities=19% Similarity=0.135 Sum_probs=160.4
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
.+++++++++++++++.+ ..+|..+. +++++|++++|.++.++.. .+..+++|++|+++++. .
T Consensus 5 ~~~~l~~l~~l~~~~~~l-------~~ip~~~~-~~l~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~n~--l 67 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNL-------TALPPDLP-KDTTILHLSENLLYTFSLA-------TLMPYTRLTQLNLDRAE--L 67 (290)
T ss_dssp EEECSTTCCEEECTTSCC-------SSCCSCCC-TTCCEEECTTSCCSEEEGG-------GGTTCTTCCEEECTTSC--C
T ss_pred cccccCCccEEECCCCCC-------CcCCCCCC-CCCCEEEcCCCcCCccCHH-------HhhcCCCCCEEECCCCc--c
Confidence 467889999999999887 34454433 7899999999988766432 47788999999999776 4
Q ss_pred eecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccchh-
Q 042890 93 AKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS- 169 (254)
Q Consensus 93 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~- 169 (254)
..++. ...+++|++|++++|.+ ..+|..+..+++|+.|++++|.+....+... .++|+.|++++|.++.+|..
T Consensus 68 ~~~~~---~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 68 TKLQV---DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp CEEEC---CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CcccC---CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 55553 37889999999999985 4677778889999999999987665433322 47899999999999988765
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+...+.|+.+++.+|++.
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 577899999999999977655556788999999999998775 56776777889999999999874
No 53
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=7e-21 Score=152.45 Aligned_cols=201 Identities=15% Similarity=0.045 Sum_probs=151.6
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecC
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIP 96 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 96 (254)
++|++|++++|.+.+ ..+..+.. ++|++|++++|.++.++.. .+..+++|++|+++++. ...++
T Consensus 28 ~~l~~L~ls~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L~~n~--l~~~~ 92 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH------LGSYSFFSFPELQVLDLSRCEIQTIEDG-------AYQSLSHLSTLILTGNP--IQSLA 92 (276)
T ss_dssp TTCCEEECTTCCCCE------ECTTTTTTCTTCSEEECTTCCCCEECTT-------TTTTCTTCCEEECTTCC--CCEEC
T ss_pred CCccEEECCCCcccc------cCHhHhccccCCcEEECCCCcCCccCHH-------HccCCcCCCEEECCCCc--cCccC
Confidence 469999999998722 12224555 8899999999988776643 36778899999999776 33433
Q ss_pred CCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcc-ccccc--cCCcCeEecccccccccch-hhhh
Q 042890 97 NPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR-LPEIS--SGNISWLFLRGIAIEELPS-SIER 172 (254)
Q Consensus 97 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~p~~~--~~~L~~L~l~~~~~~~l~~-~~~~ 172 (254)
. ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+... +|... .++|+.|++++|.++.++. .+..
T Consensus 93 ~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 93 L-GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp T-TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred h-hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 1 2788899999999999986655555688899999999999876652 35433 4789999999999987654 4666
Q ss_pred ccccC----EEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 173 QLRLS----WLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 173 ~~~L~----~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+++++ .|++++|.+.+..+..+ ...+|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66676 89999998766544433 4457999999998877666666788999999999999886
No 54
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.2e-20 Score=161.33 Aligned_cols=190 Identities=17% Similarity=0.122 Sum_probs=125.4
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCc
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKL 91 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~ 91 (254)
.|+.+++|++|++++|.+.+ ++ +.. ++|++|++++|.++.++ +..+++|++|+++++.-
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-------~~--~~~l~~L~~L~Ls~N~l~~~~----------~~~l~~L~~L~L~~N~l- 118 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-------LD--LSQNTNLTYLACDSNKLTNLD----------VTPLTKLTYLNCDTNKL- 118 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-------CC--CTTCTTCSEEECCSSCCSCCC----------CTTCTTCCEEECCSSCC-
T ss_pred hhcccCCCCEEEccCCcCCe-------Ec--cccCCCCCEEECcCCCCceee----------cCCCCcCCEEECCCCcC-
Confidence 45566777777777777622 11 444 77777777777666553 45677778887776642
Q ss_pred eeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhh
Q 042890 92 IAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIE 171 (254)
Q Consensus 92 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~ 171 (254)
..+ .++.+++|++|++++|.+.+ ++ +..+++|+.|++++|...+..+....++|+.|++++|.++.+| +.
T Consensus 119 -~~l----~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~ 188 (457)
T 3bz5_A 119 -TKL----DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VS 188 (457)
T ss_dssp -SCC----CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CT
T ss_pred -Cee----cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cc
Confidence 222 35567778888888777544 22 5667777777777775555554444567777888777777776 56
Q ss_pred hccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCC
Q 042890 172 RQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIP 238 (254)
Q Consensus 172 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 238 (254)
.+++|+.|++++|.+.+. .++.+++|+.|++++|.+.+ +| +..+++|+.|++++|.+..+|
T Consensus 189 ~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 677777777777776553 26667777777777776655 44 566777777777777766544
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-22 Score=172.78 Aligned_cols=212 Identities=13% Similarity=0.019 Sum_probs=123.4
Q ss_pred cccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCC
Q 042890 12 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHK 90 (254)
Q Consensus 12 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~ 90 (254)
.+|+.+++|++|++++|.+.+. ++ +.. ++|++|++++|.++.++ ..++|++|+++++..
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~-------~~-l~~l~~L~~L~Ls~N~l~~l~------------~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYET-------LD-LESLSTLRTLDLNNNYVQELL------------VGPSIETLHAANNNI 111 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEE-------EE-CTTCTTCCEEECCSSEEEEEE------------ECTTCCEEECCSSCC
T ss_pred HHHhCCCCCCEEEeeCCCCCCC-------cc-cccCCCCCEEEecCCcCCCCC------------CCCCcCEEECcCCcC
Confidence 3455555555555555554211 11 333 55555555555443322 225566666665442
Q ss_pred ceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccc
Q 042890 91 LIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELP 167 (254)
Q Consensus 91 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~ 167 (254)
..++. ..++.|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|... +++|+.|++++|.++.+|
T Consensus 112 --~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 112 --SRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp --CCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred --CCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 22221 134667777777777665556566667777777777776655444332 266777777777777654
Q ss_pred hhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC--CCChhhhhhc
Q 042890 168 SSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE--RIPESIIQLF 245 (254)
Q Consensus 168 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~ 245 (254)
... .+++|+.|++++|.+.+. |..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|.++..++
T Consensus 186 ~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 186 GQV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp CCC-CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred ccc-cCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 432 466777777777776553 3346677777777777766553 5555666777777777777765 4555566666
Q ss_pred ccCcccc
Q 042890 246 VSGYLLL 252 (254)
Q Consensus 246 ~L~~L~l 252 (254)
.|+.+++
T Consensus 263 ~L~~l~~ 269 (487)
T 3oja_A 263 RVQTVAK 269 (487)
T ss_dssp HHHHHHH
T ss_pred CCcEEec
Confidence 6655543
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=9.9e-22 Score=172.45 Aligned_cols=235 Identities=16% Similarity=0.108 Sum_probs=163.8
Q ss_pred CCcccCCCCcceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhc---c---------hhhhcc
Q 042890 10 NPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQL---W---------DRVKRY 77 (254)
Q Consensus 10 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l---~---------~~~~~~ 77 (254)
.+..|..+++|++|+++++.+. .++..+...+|++|++.+|.+..+|...+..+ . .....+
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~-------~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIE-------RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEEC-------SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred chhhhcCcCcccEEEecCccch-------hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 3456777888999999888772 23333332477777777777666664311111 0 001456
Q ss_pred cccceehhhccCCcee-ecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc---ccCCc
Q 042890 78 SKLNQIIHAACHKLIA-KIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNI 153 (254)
Q Consensus 78 ~~L~~l~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~---~~~~L 153 (254)
++|++|+++++..... ..+. .+..+++|++|++++|.+.+ ++..+..+++|+.|++++|......+.. ..++|
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQ--SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEH--HHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred CCCCEEeCcCCccCccccccc--cccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 7788888876653211 1233 56677888888888887543 3333777888888888887765544422 13788
Q ss_pred CeEecccccccc-cchhhhhccccCEEeccCCcCc-ccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccC
Q 042890 154 SWLFLRGIAIEE-LPSSIERQLRLSWLDLSDCKRL-KSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAK 231 (254)
Q Consensus 154 ~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 231 (254)
++|++++|.++. .|..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 888888888774 4556778888888888888876 46777788888888888888888777788888888888999888
Q ss_pred CCCCCCC-hhhhhhcccCcccccC
Q 042890 232 TNIERIP-ESIIQLFVSGYLLLSY 254 (254)
Q Consensus 232 n~l~~l~-~~~~~~~~L~~L~ls~ 254 (254)
|.+..++ ..+..+++|++|++++
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCCCCHHHhhcccCCcEEEecC
Confidence 8888654 4577888888888764
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-20 Score=149.48 Aligned_cols=195 Identities=18% Similarity=0.173 Sum_probs=159.6
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
...+.++++++.++.+|.. + .+++++|+++++. ...++. ..|..+++|++|++++|.+....+..+.
T Consensus 16 ~~~~~l~~~~~~l~~ip~~--------~--~~~l~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~i~~~~~~ 82 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSN--------I--PADTKKLDLQSNK--LSSLPS-KAFHRLTKLRLLYLNDNKLQTLPAGIFK 82 (270)
T ss_dssp TTTTEEECTTSCCSSCCSC--------C--CTTCSEEECCSSC--CSCCCT-TSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred CCCCEEEccCCCCCccCCC--------C--CCCCCEEECcCCC--CCeeCH-HHhcCCCCCCEEECCCCccCeeChhhhc
Confidence 5678999999999888864 2 3689999999776 344442 2788999999999999986544445567
Q ss_pred CCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEE
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGIL 203 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 203 (254)
.+++|+.|++++|.+....+... .++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence 89999999999987654433322 47899999999999987764 7889999999999999877666668899999999
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCCCCChh-hhhhcccCcccccC
Q 042890 204 DLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPES-IIQLFVSGYLLLSY 254 (254)
Q Consensus 204 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~ls~ 254 (254)
++++|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|+.|++++
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 9999988877777788999999999999999987754 77899999998864
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.7e-21 Score=168.18 Aligned_cols=90 Identities=20% Similarity=0.098 Sum_probs=62.3
Q ss_pred cCCcCeEecccccccc-cch---hhhhccccCEEeccCCcCcccCC--ccccCCCccCEEEecCCCCCcccCccccCCCC
Q 042890 150 SGNISWLFLRGIAIEE-LPS---SIERQLRLSWLDLSDCKRLKSLP--SSLYRLKSLGILDLHGCSNLQRLPECLGQLSS 223 (254)
Q Consensus 150 ~~~L~~L~l~~~~~~~-l~~---~~~~~~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 223 (254)
.++|+.|++++|.++. +|. .+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. .+|..+..+++
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~ 411 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc
Confidence 4778888888888774 332 25567788888888887655321 34667788888888887665 56666677777
Q ss_pred CcEEeccCCCCCCCChh
Q 042890 224 PITCNLAKTNIERIPES 240 (254)
Q Consensus 224 L~~L~l~~n~l~~l~~~ 240 (254)
|+.|++++|.+..+|..
T Consensus 412 L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp CCEEECTTSCCSCCCTT
T ss_pred ccEEECCCCCcccccch
Confidence 77777777777665543
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=3.7e-22 Score=163.10 Aligned_cols=213 Identities=10% Similarity=-0.023 Sum_probs=165.6
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCc
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKL 91 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~ 91 (254)
.+..+++|++|++++|.+.+ ..+..+.. ++|++|++++|.+...++ +..+++|++|+++++.
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~l~~L~~L~Ls~n~-- 91 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNVLYETLD---------LESLSTLRTLDLNNNY-- 91 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCC------CCHHHHTTCTTCCEEECTTSCCEEEEE---------ETTCTTCCEEECCSSE--
T ss_pred HhccCCCCCEEECcCCccCc------CCHHHhhCCCcCCEEECCCCcCCcchh---------hhhcCCCCEEECcCCc--
Confidence 34567799999999999832 22334556 899999999998765432 5678999999999765
Q ss_pred eeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccc-h
Q 042890 92 IAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELP-S 168 (254)
Q Consensus 92 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~-~ 168 (254)
...++ ..++|++|++++|.+.+..+. .+++|+.|++++|.+....+... .++|++|++++|.++.++ .
T Consensus 92 l~~l~------~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 92 VQELL------VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEE------ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred ccccc------CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 44444 248999999999986554333 46789999999988766544332 478999999999999754 3
Q ss_pred hh-hhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhccc
Q 042890 169 SI-ERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVS 247 (254)
Q Consensus 169 ~~-~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 247 (254)
.+ ..+++|+.|++++|.+.+. + ....+++|+.|++++|.+.+ ++..+..+++|+.|++++|.+..+|..+..+++|
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence 34 4679999999999997665 2 24458999999999987765 4445888999999999999999999888899999
Q ss_pred CcccccC
Q 042890 248 GYLLLSY 254 (254)
Q Consensus 248 ~~L~ls~ 254 (254)
+.|++++
T Consensus 240 ~~L~l~~ 246 (317)
T 3o53_A 240 EHFDLRG 246 (317)
T ss_dssp CEEECTT
T ss_pred CEEEccC
Confidence 9999874
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=6.3e-21 Score=167.34 Aligned_cols=142 Identities=20% Similarity=0.173 Sum_probs=78.0
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhc
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAA 87 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~ 87 (254)
+.+.+|+.+++|++|++++|.+. ...+..+.. ++|++|++++|.++.+++. ++..+++|++|++++
T Consensus 43 ~~~~~~~~l~~L~~L~Ls~n~i~------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 43 LGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQSLALG-------AFSGLSSLQKLVAVE 109 (570)
T ss_dssp ECTTTTTTCSSCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCEECTT-------TTTTCTTCCEEECTT
T ss_pred cChhHhhCCCCceEEECCCCcCC------ccCcccccCchhCCEEeCcCCcCCccCHh-------hhcCccccccccccc
Confidence 33446666777777777776651 112233444 6677777777666555432 255666677776665
Q ss_pred cCCceeecCCCCccCCcccccEEeccCCcCCC-ccCCCCCCCCcccEEeccCCCCCccccccc--cCCc----CeEeccc
Q 042890 88 CHKLIAKIPNPTLMPRMKKLVILNLRGSKSLK-SLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNI----SWLFLRG 160 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L----~~L~l~~ 160 (254)
+. ...++. ..++.+++|++|++++|.+.. .+|..+.++++|+.|++++|.+....+... ..++ ..+++++
T Consensus 110 n~--l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 110 TN--LASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp SC--CCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cc--cccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 54 333331 145666677777777666543 346666666677777776665443322211 1233 4455555
Q ss_pred cccccc
Q 042890 161 IAIEEL 166 (254)
Q Consensus 161 ~~~~~l 166 (254)
|.++.+
T Consensus 187 n~l~~~ 192 (570)
T 2z63_A 187 NPMNFI 192 (570)
T ss_dssp CCCCEE
T ss_pred CCceec
Confidence 555433
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.8e-21 Score=166.59 Aligned_cols=210 Identities=10% Similarity=-0.039 Sum_probs=167.1
Q ss_pred CCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceee
Q 042890 16 KMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAK 94 (254)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~ 94 (254)
.+++|++|++++|.+.+ ..+..+.. ++|++|++++|.++..++ +..+++|++|+++++. ...
T Consensus 32 ~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------l~~l~~L~~L~Ls~N~--l~~ 94 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNVLYETLD---------LESLSTLRTLDLNNNY--VQE 94 (487)
T ss_dssp TGGGCCEEECCSSCCCC------CCGGGGTTCTTCCEEECTTSCCEEEEE---------CTTCTTCCEEECCSSE--EEE
T ss_pred cCCCccEEEeeCCcCCC------CCHHHHhCCCCCCEEEeeCCCCCCCcc---------cccCCCCCEEEecCCc--CCC
Confidence 34589999999999832 22345666 999999999998765433 5678999999999775 455
Q ss_pred cCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccc-cchhhh
Q 042890 95 IPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE-LPSSIE 171 (254)
Q Consensus 95 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~-l~~~~~ 171 (254)
++. .+.|++|++++|.+.+..+. .+++|+.|++++|.+.+..|... .++|+.|++++|.++. .|..+.
T Consensus 95 l~~------~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 95 LLV------GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp EEE------CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CCC------CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 542 38999999999987654443 46889999999988777655433 4889999999999996 455554
Q ss_pred -hccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcc
Q 042890 172 -RQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYL 250 (254)
Q Consensus 172 -~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L 250 (254)
.+++|+.|++++|.+.+.. ....+++|+.|++++|.+.+. |..+..+++|+.|++++|.+..+|..+..+++|+.|
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF 242 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred hhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEE
Confidence 6899999999999977653 244689999999999887664 445888999999999999999999988899999999
Q ss_pred cccC
Q 042890 251 LLSY 254 (254)
Q Consensus 251 ~ls~ 254 (254)
++++
T Consensus 243 ~l~~ 246 (487)
T 3oja_A 243 DLRG 246 (487)
T ss_dssp ECTT
T ss_pred EcCC
Confidence 8874
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=158.64 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=166.7
Q ss_pred eeCCcccCCCCcceEEEeeccccCCCccCcccccCC-CCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehh
Q 042890 8 RLNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQD-PGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIH 85 (254)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l 85 (254)
.+.+.+|+.+++|++|++++|.+. .++.. +.. ++|++|++++|.++.++.. ..+..+++|++|++
T Consensus 90 ~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~------~~~~~l~~L~~L~l 156 (353)
T 2z80_A 90 TIEEDSFSSLGSLEHLDLSYNYLS-------NLSSSWFKPLSSLTFLNLLGNPYKTLGET------SLFSHLTKLQILRV 156 (353)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCS-------SCCHHHHTTCTTCSEEECTTCCCSSSCSS------CSCTTCTTCCEEEE
T ss_pred ccCHhhcCCCCCCCEEECCCCcCC-------cCCHhHhCCCccCCEEECCCCCCcccCch------hhhccCCCCcEEEC
Confidence 345667999999999999999983 23333 455 8999999999999888761 12678999999999
Q ss_pred hccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEeccccc
Q 042890 86 AACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIA 162 (254)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~ 162 (254)
+++.......+. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.. ...|... .++|+.|++++|.
T Consensus 157 ~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 157 GNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EESSSCCEECTT--TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCB
T ss_pred CCCccccccCHH--HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCc
Confidence 987543333344 788999999999999998777788899999999999999875 4444322 4789999999999
Q ss_pred ccccchh----hhhccccCEEeccCCcCcc----cCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCC
Q 042890 163 IEELPSS----IERQLRLSWLDLSDCKRLK----SLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 163 ~~~l~~~----~~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 234 (254)
++.++.. ......++.+++.++.+.+ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 9865421 2345678889999888766 4667788999999999999888743334468899999999999998
Q ss_pred C
Q 042890 235 E 235 (254)
Q Consensus 235 ~ 235 (254)
.
T Consensus 314 ~ 314 (353)
T 2z80_A 314 D 314 (353)
T ss_dssp C
T ss_pred c
Confidence 6
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.7e-20 Score=148.81 Aligned_cols=204 Identities=17% Similarity=0.129 Sum_probs=126.6
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
+..+++|+.|++.++.+. ....+.. ++|++|++++|.++.++ .+..+++|++|+++++. .
T Consensus 37 ~~~l~~L~~L~l~~~~i~--------~~~~l~~l~~L~~L~l~~n~l~~~~---------~l~~l~~L~~L~L~~n~--l 97 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK--------SVQGIQYLPNVRYLALGGNKLHDIS---------ALKELTNLTYLILTGNQ--L 97 (272)
T ss_dssp HHHHTTCCEEECTTSCCC--------CCTTGGGCTTCCEEECTTSCCCCCG---------GGTTCTTCCEEECTTSC--C
T ss_pred cccccceeeeeeCCCCcc--------cccccccCCCCcEEECCCCCCCCch---------hhcCCCCCCEEECCCCc--c
Confidence 345667777777777651 1223444 77777777777666543 15567777777777654 3
Q ss_pred eecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchh-
Q 042890 93 AKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSS- 169 (254)
Q Consensus 93 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~- 169 (254)
..++. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+.. ..++|+.|++++|.++.++..
T Consensus 98 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 98 QSLPN-GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CccCh-hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 33332 14667777777777777755544455666777777777776554333322 136677777777777766554
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhhh
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQL 244 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 244 (254)
+..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+. +.++.|+.++++.|.+. .+|.+++.+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 456677777777777766655555666777777777776442 33556667776666665 555555443
No 64
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.1e-23 Score=175.01 Aligned_cols=240 Identities=13% Similarity=0.065 Sum_probs=165.8
Q ss_pred CcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCc---chhhcchhhhcccccceehhh
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN---DIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~---~l~~l~~~~~~~~~L~~l~l~ 86 (254)
..++..+++|++|++++|.+++..+ ..++..+.. ++|++|++++|.+..++.. .+..+..++..+++|++|+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3456678889999999988744322 223444666 8899999998876665432 455555566788889999988
Q ss_pred ccCCcee---ecCCCCccCCcccccEEeccCCcCCCc----cCCCCCCC---------CcccEEeccCCCCC-ccccc--
Q 042890 87 ACHKLIA---KIPNPTLMPRMKKLVILNLRGSKSLKS----LPSGIFNL---------EFLTKLDLSGCSKL-KRLPE-- 147 (254)
Q Consensus 87 ~~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~~~~~-~~~p~-- 147 (254)
++..... .++. .+..+++|++|++++|.+... ++..+..+ ++|+.|++++|.+. ...+.
T Consensus 103 ~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 103 DNAFGPTAQEPLID--FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp SCCCCTTTHHHHHH--HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCcCCHHHHHHHHH--HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 7653211 2444 667788899999998876422 22223233 78888999888765 23331
Q ss_pred -c--ccCCcCeEeccccccc--c---c-chhhhhccccCEEeccCCcCc----ccCCccccCCCccCEEEecCCCCCcc-
Q 042890 148 -I--SSGNISWLFLRGIAIE--E---L-PSSIERQLRLSWLDLSDCKRL----KSLPSSLYRLKSLGILDLHGCSNLQR- 213 (254)
Q Consensus 148 -~--~~~~L~~L~l~~~~~~--~---l-~~~~~~~~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~- 213 (254)
. ..++|+.|++++|.++ . + +..+..+++|+.|++++|.+. ..++..+..+++|+.|++++|.+.+.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 1 1368888888888877 2 2 336677888899999888875 45666777888888999988877654
Q ss_pred ---cCccc--cCCCCCcEEeccCCCCCC-----CChhh-hhhcccCcccccC
Q 042890 214 ---LPECL--GQLSSPITCNLAKTNIER-----IPESI-IQLFVSGYLLLSY 254 (254)
Q Consensus 214 ---~~~~~--~~l~~L~~L~l~~n~l~~-----l~~~~-~~~~~L~~L~ls~ 254 (254)
++..+ +.+++|+.|++++|.+.. +|..+ .++++|++|++++
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 45555 337888899998888875 77766 5578888888764
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.7e-21 Score=155.42 Aligned_cols=197 Identities=15% Similarity=0.191 Sum_probs=155.7
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
+..+++|++|+++++.+ ..++ .+.. ++|++|++++|.++.++. +..+++|++|+++++. .
T Consensus 37 ~~~l~~L~~L~l~~~~i-------~~l~-~~~~l~~L~~L~L~~n~i~~~~~---------~~~l~~L~~L~L~~n~--l 97 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGV-------TTIE-GVQYLNNLIGLELKDNQITDLAP---------LKNLTKITELELSGNP--L 97 (308)
T ss_dssp HHHHHTCCEEECTTSCC-------CCCT-TGGGCTTCCEEECCSSCCCCCGG---------GTTCCSCCEEECCSCC--C
T ss_pred HHHcCCcCEEEeeCCCc-------cCch-hhhccCCCCEEEccCCcCCCChh---------HccCCCCCEEEccCCc--C
Confidence 44578999999999887 2233 4555 899999999998877653 5678999999999776 3
Q ss_pred eecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhh
Q 042890 93 AKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIER 172 (254)
Q Consensus 93 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~ 172 (254)
..++ .+..+++|++|++++|.+.. ++. +..+++|+.|++++|.+....+-...++|+.|++++|.++.++. +..
T Consensus 98 ~~~~---~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~ 171 (308)
T 1h6u_A 98 KNVS---AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LAN 171 (308)
T ss_dssp SCCG---GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred CCch---hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcC
Confidence 4444 68889999999999998544 444 78899999999999876554332235889999999999998877 788
Q ss_pred ccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh
Q 042890 173 QLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE 239 (254)
Q Consensus 173 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 239 (254)
+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+...|.
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 8999999999998765432 7889999999999988765543 7789999999999999866544
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=7e-21 Score=152.21 Aligned_cols=175 Identities=16% Similarity=0.124 Sum_probs=146.2
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
++|+.|++.+|.++.++. +..+++|++|+++++. ...++ .+..+++|++|++++|.+.+..+..+.
T Consensus 41 ~~L~~L~l~~~~i~~~~~---------l~~l~~L~~L~l~~n~--l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG---------IQYLPNVRYLALGGNK--LHDIS---ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp TTCCEEECTTSCCCCCTT---------GGGCTTCCEEECTTSC--CCCCG---GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cceeeeeeCCCCcccccc---------cccCCCCcEEECCCCC--CCCch---hhcCCCCCCEEECCCCccCccChhHhc
Confidence 889999999998877653 6789999999999776 33443 788899999999999987666566678
Q ss_pred CCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEE
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGIL 203 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 203 (254)
.+++|+.|++++|.+....+.. ..++|++|++++|.++.++.. +..+++|+.|++++|.+.+..+..++.+++|+.|
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 8999999999998866544432 247899999999999988765 5788999999999999887666667889999999
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 204 DLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 204 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 99999888877777888999999999999875
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=3.8e-21 Score=156.73 Aligned_cols=198 Identities=16% Similarity=0.133 Sum_probs=156.5
Q ss_pred CCCcceEEEeeccccCCCccCcccccCCC--CC-CceeeeeeCCCCCCCCCCcchhhcchhhhcc-----cccceehhhc
Q 042890 16 KMPKLRFLKFYSSLFNGENKCKMSYLQDP--GF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRY-----SKLNQIIHAA 87 (254)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~-----~~L~~l~l~~ 87 (254)
.+++|++|++++|.+.+ ..+..+ .. ++|++|++++|.++.+|.. +..+ ++|++|++++
T Consensus 93 ~l~~L~~L~L~~n~l~~------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG------TAPPPLLEATGPDLNILNLRNVSWATRDAW--------LAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp TTSCCCEEEEEEEBCBS------CCCCCSSSCCSCCCSEEEEESCBCSSSSSH--------HHHHHTTCCTTCCEEEEES
T ss_pred CcCCccEEEccCCcccc------hhHHHHHHhcCCCccEEEccCCCCcchhHH--------HHHHHHhhcCCCcEEEeeC
Confidence 68999999999999843 344444 55 9999999999998877543 4444 8999999997
Q ss_pred cCCceeecC-CCCccCCcccccEEeccCCcCCCc--cCCCC--CCCCcccEEeccCCCCCc--ccccc---ccCCcCeEe
Q 042890 88 CHKLIAKIP-NPTLMPRMKKLVILNLRGSKSLKS--LPSGI--FNLEFLTKLDLSGCSKLK--RLPEI---SSGNISWLF 157 (254)
Q Consensus 88 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~~~--~~p~~---~~~~L~~L~ 157 (254)
+. ...++ . .++.+++|++|++++|.+.+. .+..+ ..+++|+.|++++|.+.. ..+.. ..++|+.|+
T Consensus 159 N~--l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 159 AH--SLNFSCE--QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp CS--CCCCCTT--TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred CC--CccchHH--HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 76 34444 4 888999999999999987654 23334 789999999999988663 22222 137999999
Q ss_pred cccccccccc--hhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 158 LRGIAIEELP--SSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 158 l~~~~~~~l~--~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+++|.++..+ ..+..+++|+.|++++|.+. .+|..+. ++|+.|++++|.+.+. |. +..+++|+.|++++|.++
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 9999999754 34556789999999999977 6776665 8999999999888665 66 888999999999999986
Q ss_pred C
Q 042890 236 R 236 (254)
Q Consensus 236 ~ 236 (254)
.
T Consensus 310 ~ 310 (312)
T 1wwl_A 310 D 310 (312)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=6.7e-20 Score=146.72 Aligned_cols=197 Identities=19% Similarity=0.128 Sum_probs=158.5
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
++|++|++++|.++.++.. .+..+++|++|+++++. ...++. ..+..+++|++|++++|.+....+..+.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~-------~~~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY-------SFFSFPELQVLDLSRCE--IQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp TTCCEEECTTCCCCEECTT-------TTTTCTTCSEEECTTCC--CCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCccEEECCCCcccccCHh-------HhccccCCcEEECCCCc--CCccCH-HHccCCcCCCEEECCCCccCccChhhhc
Confidence 6799999999998877653 36788999999999875 344432 2788899999999999997666667788
Q ss_pred CCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccc--cchhhhhccccCEEeccCCcCcccCCccccCCCccC-
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEE--LPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLG- 201 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~- 201 (254)
++++|+.|++++|.+....+.. ..++|+.|++++|.++. +|..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 9999999999998766544322 24789999999999986 688899999999999999998776666677666666
Q ss_pred ---EEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChh-hhhhcccCcccccC
Q 042890 202 ---ILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPES-IIQLFVSGYLLLSY 254 (254)
Q Consensus 202 ---~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~ls~ 254 (254)
.+++++|.+.+..+..+. ..+|+.|++++|.++.+|.. +..+++|++|++++
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 899999888765555554 45899999999999987765 57899999998874
No 69
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=2.6e-20 Score=159.34 Aligned_cols=206 Identities=17% Similarity=0.092 Sum_probs=168.8
Q ss_pred CcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccC
Q 042890 11 PNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACH 89 (254)
Q Consensus 11 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~ 89 (254)
+..++++++|++|++++|.+.+ .+ .+.. ++|++|++++|.++.++ +..+++|++|+++++.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-------~~-~l~~l~~L~~L~Ls~n~l~~~~----------~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-------MT-GIEKLTGLTKLICTSNNITTLD----------LSQNTNLTYLACDSNK 96 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-------CT-TGGGCTTCSEEECCSSCCSCCC----------CTTCTTCSEEECCSSC
T ss_pred ccChhHcCCCCEEEccCCCccc-------Ch-hhcccCCCCEEEccCCcCCeEc----------cccCCCCCEEECcCCC
Confidence 3467789999999999999832 23 4555 99999999999988764 4678999999999776
Q ss_pred CceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccc-cccccch
Q 042890 90 KLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI-AIEELPS 168 (254)
Q Consensus 90 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~-~~~~l~~ 168 (254)
- ..+ .++.+++|++|++++|.+.+ ++ +..+++|+.|++++|.+.+ ++-...++|++|++++| .++.++
T Consensus 97 l--~~~----~~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~- 165 (457)
T 3bz5_A 97 L--TNL----DVTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLD- 165 (457)
T ss_dssp C--SCC----CCTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCC-
T ss_pred C--cee----ecCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccc-
Confidence 3 333 36789999999999998655 44 7889999999999988665 44444589999999999 455663
Q ss_pred hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccC
Q 042890 169 SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSG 248 (254)
Q Consensus 169 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~ 248 (254)
+..+++|+.|++++|.+.+ ++ +..+++|+.+++++|.+.+. .+..+++|+.|++++|.+..+| +..+++|+
T Consensus 166 -~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~ 236 (457)
T 3bz5_A 166 -VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLT 236 (457)
T ss_dssp -CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCS
T ss_pred -cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCC
Confidence 6778999999999998766 44 78899999999999887664 3778999999999999999887 78889999
Q ss_pred cccccC
Q 042890 249 YLLLSY 254 (254)
Q Consensus 249 ~L~ls~ 254 (254)
+|++++
T Consensus 237 ~L~l~~ 242 (457)
T 3bz5_A 237 YFDCSV 242 (457)
T ss_dssp EEECCS
T ss_pred EEEeeC
Confidence 998874
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=4.1e-20 Score=150.36 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=154.9
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
++|++|++.+|.++.++. +..+++|++|+++++. ...++ .+..+++|++|++++|.+. .++ .+.
T Consensus 41 ~~L~~L~l~~~~i~~l~~---------~~~l~~L~~L~L~~n~--i~~~~---~~~~l~~L~~L~L~~n~l~-~~~-~~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEG---------VQYLNNLIGLELKDNQ--ITDLA---PLKNLTKITELELSGNPLK-NVS-AIA 104 (308)
T ss_dssp HTCCEEECTTSCCCCCTT---------GGGCTTCCEEECCSSC--CCCCG---GGTTCCSCCEEECCSCCCS-CCG-GGT
T ss_pred CCcCEEEeeCCCccCchh---------hhccCCCCEEEccCCc--CCCCh---hHccCCCCCEEEccCCcCC-Cch-hhc
Confidence 889999999999888763 6789999999999776 44555 4788999999999999854 444 488
Q ss_pred CCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEec
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLH 206 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 206 (254)
.+++|+.|++++|.+....+-...++|+.|++++|.++.++. +..+++|+.|++++|.+.+. +. +..+++|+.|+++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKAD 181 (308)
T ss_dssp TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC
T ss_pred CCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECC
Confidence 999999999999886553332235899999999999998876 78899999999999987653 33 8899999999999
Q ss_pred CCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 207 GCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 207 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
+|.+.+..+ +..+++|+.|++++|.+..++. +..+++|+.|++++
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccC
Confidence 988765443 7789999999999999998874 88899999998863
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.9e-20 Score=146.79 Aligned_cols=194 Identities=13% Similarity=0.167 Sum_probs=127.1
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccC-CcCCCccCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRG-SKSLKSLPSGI 125 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~ 125 (254)
.+|++|++++|.++.++.. .+..+++|++|+++++.. ...++. ..|.++++|++|++++ |.+....+..+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~-------~~~~l~~L~~L~l~~n~~-l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH-------AFSNLPNISRIYVSIDVT-LQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESCCCSEECTT-------TTTTCTTCCEEEEECCSS-CCEECT-TTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCCcceEECHH-------HccCCCCCcEEeCCCCCC-cceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4677777777776666542 255667777777775542 223321 1566777777777776 65443334456
Q ss_pred CCCCcccEEeccCCCCCccccccc-cCCcC---eEecccc-cccccchh-hhhccccC-EEeccCCcCcccCCccccCCC
Q 042890 126 FNLEFLTKLDLSGCSKLKRLPEIS-SGNIS---WLFLRGI-AIEELPSS-IERQLRLS-WLDLSDCKRLKSLPSSLYRLK 198 (254)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~---~L~l~~~-~~~~l~~~-~~~~~~L~-~L~l~~n~~~~~~~~~l~~l~ 198 (254)
..+++|+.|++++|.+.. +|... ..+++ .|++++| .++.+|.. +..+++|+ .|++++|.+. .+|......+
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC
T ss_pred CCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC
Confidence 667777777777765443 44422 35555 7777777 77777654 67778888 8888888766 4443332337
Q ss_pred ccCEEEecCCC-CCcccCccccCC-CCCcEEeccCCCCCCCChhhhhhcccCccccc
Q 042890 199 SLGILDLHGCS-NLQRLPECLGQL-SSPITCNLAKTNIERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 199 ~L~~L~l~~~~-~~~~~~~~~~~l-~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls 253 (254)
+|+.+++++|. +.+..+..+..+ ++|+.|++++|.++.+|.. .+++|+.|+++
T Consensus 180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence 78888888874 655556667777 8888888888888877764 56777777765
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=3e-19 Score=152.64 Aligned_cols=129 Identities=22% Similarity=0.282 Sum_probs=63.5
Q ss_pred cceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCc------------chhhcchhhhcccccceehh
Q 042890 19 KLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN------------DIEQLWDRVKRYSKLNQIIH 85 (254)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~------------~l~~l~~~~~~~~~L~~l~l 85 (254)
+|++|++++|.+. .++ .+.. ++|++|++++|.++.+|+. .+..++ ++..+++|++|++
T Consensus 132 ~L~~L~L~~n~l~-------~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLE-------KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCS-------SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCC-------CCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEEC
Confidence 4555555555541 123 2444 6666666666666555432 112222 2455566666666
Q ss_pred hccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccc
Q 042890 86 AACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEE 165 (254)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~ 165 (254)
+++. ...+|. . .++|++|++++|.+. .+|. +..+++|+.|++++|.+.+ +|... .+++.|++++|.++.
T Consensus 203 ~~N~--l~~l~~--~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~-~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 203 DNNS--LKKLPD--L---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLP-PSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSC--CSSCCC--C---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCC-TTCCEEECCSSCCSC
T ss_pred CCCc--CCcCCC--C---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccc-cccCEEECCCCcccc
Confidence 6544 222332 1 135566666665533 4443 5566666666666655432 33222 445555555554444
Q ss_pred cc
Q 042890 166 LP 167 (254)
Q Consensus 166 l~ 167 (254)
+|
T Consensus 272 l~ 273 (454)
T 1jl5_A 272 LP 273 (454)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=5e-19 Score=156.18 Aligned_cols=113 Identities=23% Similarity=0.240 Sum_probs=82.4
Q ss_pred CcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCC
Q 042890 129 EFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGC 208 (254)
Q Consensus 129 ~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 208 (254)
++|+.|++++|.+. .+|... .+|+.|++.+|.++.+|.. .++|+.|++++|.+.+ +| ..+++|+.|++++|
T Consensus 181 ~~L~~L~Ls~N~l~-~l~~~~-~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 181 SGLQELSVSDNQLA-SLPTLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGN 251 (622)
T ss_dssp TTCCEEECCSSCCS-CCCCCC-TTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCC-CCCCcc-chhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCC
Confidence 56677777776543 344333 6677777777777766642 3678888888887654 44 35678899999888
Q ss_pred CCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 209 SNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 209 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
.+. .+|. .+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus 252 ~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 252 RLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 665 4554 46889999999999998888889999999998864
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=150.33 Aligned_cols=222 Identities=18% Similarity=0.078 Sum_probs=162.6
Q ss_pred cceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhh--hcccccceehhhccCCceeecC
Q 042890 19 KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRV--KRYSKLNQIIHAACHKLIAKIP 96 (254)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~--~~~~~L~~l~l~~~~~~~~~~~ 96 (254)
.++.+.+.++.++.... ......+..++|++|++++|.+....+. .+ ..+++|++|+++++... ...+
T Consensus 65 ~l~~l~l~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~~~~~~L~~L~Ls~n~i~-~~~~ 134 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLL--VGALRVLAYSRLKELTLEDLKITGTMPP-------LPLEATGLALSSLRLRNVSWA-TGRS 134 (310)
T ss_dssp CCCEEEECSCCCBHHHH--HHHHHHHHHSCCCEEEEESCCCBSCCCC-------CSSSCCCBCCSSCEEESCCCS-STTS
T ss_pred ceeEEEEeCCcCCHHHH--HHHHHhcccCceeEEEeeCCEeccchhh-------hhhhccCCCCCEEEeeccccc-chhh
Confidence 46677777666522110 0111111126699999999987644332 13 67889999999977632 1111
Q ss_pred C--CCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcc--cc--c--cccCCcCeEecccccccccch
Q 042890 97 N--PTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LP--E--ISSGNISWLFLRGIAIEELPS 168 (254)
Q Consensus 97 ~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~p--~--~~~~~L~~L~l~~~~~~~l~~ 168 (254)
. ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+ . ..+++|++|++++|.++.++.
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 0 01344689999999999998777777888999999999999886542 21 1 224789999999999987665
Q ss_pred h----hhhccccCEEeccCCcCcccCCccccCC---CccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhh
Q 042890 169 S----IERQLRLSWLDLSDCKRLKSLPSSLYRL---KSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESI 241 (254)
Q Consensus 169 ~----~~~~~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~ 241 (254)
. +..+++|++|++++|.+.+..|..+..+ ++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|. +
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~ 290 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-P 290 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-T
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-h
Confidence 3 4677999999999999888777777666 69999999998877 5676553 799999999999998765 6
Q ss_pred hhhcccCcccccC
Q 042890 242 IQLFVSGYLLLSY 254 (254)
Q Consensus 242 ~~~~~L~~L~ls~ 254 (254)
..+++|++|++++
T Consensus 291 ~~l~~L~~L~L~~ 303 (310)
T 4glp_A 291 DELPEVDNLTLDG 303 (310)
T ss_dssp TSCCCCSCEECSS
T ss_pred hhCCCccEEECcC
Confidence 7889999999874
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.5e-19 Score=145.69 Aligned_cols=192 Identities=19% Similarity=0.101 Sum_probs=161.1
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
++++.+++.++.++.+|.. + .++++.|+++++... ...+. .+..+++|+.|++++|.+.. ++. ..
T Consensus 10 ~~l~~l~~~~~~l~~ip~~--------~--~~~l~~L~L~~N~l~-~~~~~--~~~~l~~L~~L~L~~n~l~~-~~~-~~ 74 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPD--------L--PKDTTILHLSENLLY-TFSLA--TLMPYTRLTQLNLDRAELTK-LQV-DG 74 (290)
T ss_dssp TTCCEEECTTSCCSSCCSC--------C--CTTCCEEECTTSCCS-EEEGG--GGTTCTTCCEEECTTSCCCE-EEC-CS
T ss_pred CCccEEECCCCCCCcCCCC--------C--CCCCCEEEcCCCcCC-ccCHH--HhhcCCCCCEEECCCCccCc-ccC-CC
Confidence 7899999999999998864 3 368999999977632 22233 78899999999999998643 444 36
Q ss_pred CCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccch-hhhhccccCEEeccCCcCcccCCccccCCCccCEE
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGIL 203 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 203 (254)
.+++|+.|++++|.+. .+|... .++|++|++++|.++.+|. .+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 8999999999998755 555433 4789999999999998875 58899999999999999887766678899999999
Q ss_pred EecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 204 DLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 204 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
++++|.+.+..+..+..+++|+.|++++|.++.+|..+...++|+.+++++
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 999998876666677889999999999999999999999999999998864
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1.3e-18 Score=137.44 Aligned_cols=136 Identities=19% Similarity=0.163 Sum_probs=72.8
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchh-hhhcccc
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSS-IERQLRL 176 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~-~~~~~~L 176 (254)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+.. ..++|++|++++|.++.+|.. +..+++|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 3445555555555555544433444445555555555554433222221 124555555555555555443 3555666
Q ss_pred CEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 177 SWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 177 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 66666666655444445556666666666666555555555556666666666666654
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.8e-19 Score=138.81 Aligned_cols=195 Identities=14% Similarity=0.077 Sum_probs=151.7
Q ss_pred CcceEEEeeccccCCCccCcccccC-CCCC-CceeeeeeCCCC-CCCCCCcchhhcchhhhcccccceehhhccCCceee
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYP-LKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAK 94 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~-~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~ 94 (254)
+++++|++++|.+ ..++. .+.. ++|++|++++|. ++.+++. ++..+++|++|++++|.. ...
T Consensus 31 ~~l~~L~l~~n~l-------~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-------~f~~l~~L~~L~l~~~n~-l~~ 95 (239)
T 2xwt_C 31 PSTQTLKLIETHL-------RTIPSHAFSNLPNISRIYVSIDVTLQQLESH-------SFYNLSKVTHIEIRNTRN-LTY 95 (239)
T ss_dssp TTCCEEEEESCCC-------SEECTTTTTTCTTCCEEEEECCSSCCEECTT-------TEESCTTCCEEEEEEETT-CCE
T ss_pred CcccEEEEeCCcc-------eEECHHHccCCCCCcEEeCCCCCCcceeCHh-------HcCCCcCCcEEECCCCCC-eeE
Confidence 3899999999998 33333 4556 999999999997 8877753 367889999999997333 344
Q ss_pred cCCCCccCCcccccEEeccCCcCCCccCCCCCCCCccc---EEeccCCCCCccccccc---cCCcC-eEecccccccccc
Q 042890 95 IPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLT---KLDLSGCSKLKRLPEIS---SGNIS-WLFLRGIAIEELP 167 (254)
Q Consensus 95 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~p~~~---~~~L~-~L~l~~~~~~~l~ 167 (254)
++. ..|..+++|++|++++|.+.+ +|. +..+++|+ .|++++|.....++... .++|+ .+++++|.++.+|
T Consensus 96 i~~-~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 96 IDP-DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp ECT-TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred cCH-HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 442 278899999999999998654 676 77888888 99999983344555432 47888 9999999999988
Q ss_pred hhhhhccccCEEeccCCc-CcccCCccccCC-CccCEEEecCCCCCcccCccccCCCCCcEEeccCCC
Q 042890 168 SSIERQLRLSWLDLSDCK-RLKSLPSSLYRL-KSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTN 233 (254)
Q Consensus 168 ~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 233 (254)
......++|+.|++++|. +....+..+.++ ++|+.+++++|.+.+ +|.. .+++|+.|++.++.
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 875555899999999995 666556678888 999999999987764 4443 57899999988763
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=9.4e-19 Score=138.18 Aligned_cols=171 Identities=16% Similarity=0.097 Sum_probs=140.8
Q ss_pred cccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCe
Q 042890 78 SKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISW 155 (254)
Q Consensus 78 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~ 155 (254)
...+++++++.. ...+|. .+. +.++.|++++|.+.+..+..+.++++|+.|++++|.+....+... .++|++
T Consensus 14 ~~~~~l~~~~~~--l~~~p~--~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKS--LDSVPS--GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCC--CSSCCS--CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCC--ccccCC--CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 456677776544 455654 443 689999999999877767778899999999999988766555432 489999
Q ss_pred Eecccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCC
Q 042890 156 LFLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 156 L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 234 (254)
|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 167 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence 99999999988754 68899999999999998876666678999999999999988777777889999999999999999
Q ss_pred CCCCh-hhhhhcccCcccccC
Q 042890 235 ERIPE-SIIQLFVSGYLLLSY 254 (254)
Q Consensus 235 ~~l~~-~~~~~~~L~~L~ls~ 254 (254)
..++. .+..+++|++|++++
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHHHHhCCCCCCEEEeeC
Confidence 97765 678899999999874
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.5e-18 Score=148.29 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=76.6
Q ss_pred cccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEe
Q 042890 78 SKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 157 (254)
Q Consensus 78 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~ 157 (254)
++|++|+++++. ...++. . .++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|... .+|++|+
T Consensus 111 ~~L~~L~l~~n~--l~~l~~--~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~-~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNN--LKALSD--L---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP-PSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSC--CSCCCS--C---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC-TTCCEEE
T ss_pred CCCcEEECCCCc--cCcccC--C---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc-ccccEEE
Confidence 456666665443 222321 1 1467777777776443 55 36667777777777765443 44433 5666777
Q ss_pred cccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCC
Q 042890 158 LRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERI 237 (254)
Q Consensus 158 l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 237 (254)
+++|.++.+| .+..+++|+.|++++|.+.+ +|.. .++|+.|++++|.+. .+|. +..+++|+.|++++|.+..+
T Consensus 180 L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 180 AGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSC
T ss_pred CcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcc
Confidence 7777666665 35566666666666665443 2221 134555555554433 3332 44455555555555554444
Q ss_pred C
Q 042890 238 P 238 (254)
Q Consensus 238 ~ 238 (254)
|
T Consensus 253 ~ 253 (454)
T 1jl5_A 253 P 253 (454)
T ss_dssp C
T ss_pred c
Confidence 3
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=7.2e-19 Score=145.52 Aligned_cols=216 Identities=16% Similarity=0.136 Sum_probs=158.3
Q ss_pred CcceEEEeeccccCCCccCcccccC-CCCC-CceeeeeeCCCCC-CCCCCcchhhcchhhhcccccceehhhccCCceee
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPL-KSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAK 94 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~-~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~ 94 (254)
+++++|++++|.| ..++. .+.. ++|++|+|++|.+ +.++.. ++..+++++++....+.. ...
T Consensus 30 ~~l~~L~Ls~N~i-------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-------~f~~L~~l~~~l~~~~N~-l~~ 94 (350)
T 4ay9_X 30 RNAIELRFVLTKL-------RVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-------VFSNLPKLHEIRIEKANN-LLY 94 (350)
T ss_dssp TTCSEEEEESCCC-------SEECTTSSTTCTTCCEEEEECCTTCCEECTT-------SBCSCTTCCEEEEEEETT-CCE
T ss_pred CCCCEEEccCCcC-------CCcCHHHHcCCCCCCEEECcCCCCCCccChh-------HhhcchhhhhhhcccCCc-ccc
Confidence 5799999999998 44554 4566 9999999999985 445543 356777777655554444 344
Q ss_pred c-CCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccccc----CCcCeEecccccccccchh
Q 042890 95 I-PNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS----GNISWLFLRGIAIEELPSS 169 (254)
Q Consensus 95 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~----~~L~~L~l~~~~~~~l~~~ 169 (254)
+ +. .|..+++|++|++++|.+....+..+....++..+++.++.....++...+ ..++.|++++|.++.++..
T Consensus 95 l~~~--~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 95 INPE--AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp ECTT--SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred cCch--hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence 4 44 788999999999999986554444455666788899877666666665432 4577899999999999988
Q ss_pred hhhccccCEEeccCCcCcccCCc-cccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCC-CCCCCChhhhhhccc
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPS-SLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKT-NIERIPESIIQLFVS 247 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L 247 (254)
+...++++.+++.++...+.+|. .|.++++|+.|++++|++....+.. +.+|+.|.+.++ .++.+|. +..+++|
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcCh
Confidence 77778999999987666666664 5789999999999998775543333 456666665554 4677874 7788999
Q ss_pred CcccccC
Q 042890 248 GYLLLSY 254 (254)
Q Consensus 248 ~~L~ls~ 254 (254)
+.+++++
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 9888764
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.3e-20 Score=153.37 Aligned_cols=199 Identities=21% Similarity=0.224 Sum_probs=144.9
Q ss_pred CcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecC
Q 042890 18 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIP 96 (254)
Q Consensus 18 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~ 96 (254)
++++.|+++++.+.+. +..+.. ++|++|++++|.+.. ..++..+..+++|++|+++++.. ....+
T Consensus 70 ~~l~~L~l~~n~l~~~-------~~~~~~~~~L~~L~L~~~~l~~------~~~~~~~~~~~~L~~L~L~~~~l-~~~~~ 135 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP-------LAEHFSPFRVQHMDLSNSVIEV------STLHGILSQCSKLQNLSLEGLRL-SDPIV 135 (336)
T ss_dssp TTCSEEECTTCEECSC-------CCSCCCCBCCCEEECTTCEECH------HHHHHHHTTBCCCSEEECTTCBC-CHHHH
T ss_pred ccceEEEcCCcccccc-------chhhccCCCCCEEEccCCCcCH------HHHHHHHhhCCCCCEEeCcCccc-CHHHH
Confidence 7888899988887332 222334 889999999986432 11233477889999999998753 33445
Q ss_pred CCCccCCcccccEEeccCC-cCCC-ccCCCCCCCCcccEEeccCC-CCCcc-ccccc--cC-CcCeEeccccc--cc--c
Q 042890 97 NPTLMPRMKKLVILNLRGS-KSLK-SLPSGIFNLEFLTKLDLSGC-SKLKR-LPEIS--SG-NISWLFLRGIA--IE--E 165 (254)
Q Consensus 97 ~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~p~~~--~~-~L~~L~l~~~~--~~--~ 165 (254)
. .++.+++|++|++++| .+.. .++..+..+++|+.|++++| .+... ++... .+ +|+.|++++|. ++ .
T Consensus 136 ~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 136 N--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp H--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred H--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 4 6778999999999998 4433 25555677899999999998 55432 33322 36 89999999994 43 5
Q ss_pred cchhhhhccccCEEeccCCc-CcccCCccccCCCccCEEEecCCC-CCcccCccccCCCCCcEEeccCC
Q 042890 166 LPSSIERQLRLSWLDLSDCK-RLKSLPSSLYRLKSLGILDLHGCS-NLQRLPECLGQLSSPITCNLAKT 232 (254)
Q Consensus 166 l~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n 232 (254)
++..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|. ........+..+++|+.|++++|
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77778888999999999998 556666678889999999999985 22222235677899999999998
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=2.3e-20 Score=153.42 Aligned_cols=219 Identities=15% Similarity=0.076 Sum_probs=133.7
Q ss_pred ceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCC
Q 042890 20 LRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPT 99 (254)
Q Consensus 20 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 99 (254)
++.++++++.+... ....+..+.++.+++.+|.+...+.. ...+++|++|+++++......++.
T Consensus 49 ~~~l~l~~~~~~~~------~~~~~~~~~l~~L~l~~n~l~~~~~~--------~~~~~~L~~L~L~~~~l~~~~~~~-- 112 (336)
T 2ast_B 49 WQTLDLTGKNLHPD------VTGRLLSQGVIAFRCPRSFMDQPLAE--------HFSPFRVQHMDLSNSVIEVSTLHG-- 112 (336)
T ss_dssp SSEEECTTCBCCHH------HHHHHHHTTCSEEECTTCEECSCCCS--------CCCCBCCCEEECTTCEECHHHHHH--
T ss_pred heeeccccccCCHH------HHHhhhhccceEEEcCCccccccchh--------hccCCCCCEEEccCCCcCHHHHHH--
Confidence 66777777665210 00000115677777777765554433 345677777777766521122444
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCC-CCc-cccccc--cCCcCeEecccc-cccc--cchhhhh
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS-KLK-RLPEIS--SGNISWLFLRGI-AIEE--LPSSIER 172 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~p~~~--~~~L~~L~l~~~-~~~~--l~~~~~~ 172 (254)
.+..+++|++|++++|.+....+..+..+++|+.|++++|. +.. .++... .++|+.|++++| .++. ++..+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 56677777777777777555555556677777777777773 332 133321 367777777777 6663 5666677
Q ss_pred cc-ccCEEeccCC--cCc-ccCCccccCCCccCEEEecCCC-CCcccCccccCCCCCcEEeccCCC-CC-CCChhhhhhc
Q 042890 173 QL-RLSWLDLSDC--KRL-KSLPSSLYRLKSLGILDLHGCS-NLQRLPECLGQLSSPITCNLAKTN-IE-RIPESIIQLF 245 (254)
Q Consensus 173 ~~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~-l~-~l~~~~~~~~ 245 (254)
++ +|++|++++| .+. ..++..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|. +. .....+..++
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 77 7777777777 333 3444555667777777777776 444555566677777777777774 22 1122456677
Q ss_pred ccCcccccC
Q 042890 246 VSGYLLLSY 254 (254)
Q Consensus 246 ~L~~L~ls~ 254 (254)
+|++|++++
T Consensus 273 ~L~~L~l~~ 281 (336)
T 2ast_B 273 TLKTLQVFG 281 (336)
T ss_dssp TCCEEECTT
T ss_pred CCCEEeccC
Confidence 777777653
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=140.77 Aligned_cols=202 Identities=17% Similarity=0.088 Sum_probs=151.0
Q ss_pred CCcceEEEeeccccCCCccCcccccCCC--CC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCcee
Q 042890 17 MPKLRFLKFYSSLFNGENKCKMSYLQDP--GF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIA 93 (254)
Q Consensus 17 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l--~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~ 93 (254)
+++|++|++++|.+.+. .+..+ .. ++|++|++++|.++..... +.. ..+..+++|++|+++++.. ..
T Consensus 90 ~~~L~~L~l~~n~l~~~------~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~--~~~~~~~~L~~L~Ls~n~l-~~ 159 (310)
T 4glp_A 90 YSRLKELTLEDLKITGT------MPPLPLEATGLALSSLRLRNVSWATGRSW-LAE--LQQWLKPGLKVLSIAQAHS-PA 159 (310)
T ss_dssp HSCCCEEEEESCCCBSC------CCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHH--HHTTBCSCCCEEEEECCSS-CC
T ss_pred cCceeEEEeeCCEeccc------hhhhhhhccCCCCCEEEeecccccchhhh-hHH--HHhhhccCCCEEEeeCCCc-ch
Confidence 45699999999998433 33444 55 9999999999987643221 111 1234789999999998763 22
Q ss_pred ecCCCCccCCcccccEEeccCCcCCCc--c--CCCCCCCCcccEEeccCCCCCcccccc------ccCCcCeEecccccc
Q 042890 94 KIPNPTLMPRMKKLVILNLRGSKSLKS--L--PSGIFNLEFLTKLDLSGCSKLKRLPEI------SSGNISWLFLRGIAI 163 (254)
Q Consensus 94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~p~~------~~~~L~~L~l~~~~~ 163 (254)
..+. .+..+++|++|++++|.+.+. + +..+..+++|+.|++++|.+.. ++.. ..++|++|++++|.+
T Consensus 160 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 160 FSCE--QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp CCTT--SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred hhHH--HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCC
Confidence 3334 788999999999999986542 2 2223678999999999987642 2321 238999999999999
Q ss_pred ccc-chhhhhc---cccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCC
Q 042890 164 EEL-PSSIERQ---LRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIER 236 (254)
Q Consensus 164 ~~l-~~~~~~~---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (254)
+.. |..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.+.+. |. +..+++|+.|++++|.++.
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 976 7666555 69999999999977 6676553 7999999999888653 33 5678999999999999863
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.2e-18 Score=139.04 Aligned_cols=170 Identities=19% Similarity=0.207 Sum_probs=134.6
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
++|+.|++.+|.++.++. +..+++|++|+++++. ...++ .+..+++|+.|++++|.+. .++. +.
T Consensus 46 ~~L~~L~l~~~~i~~~~~---------~~~l~~L~~L~L~~n~--l~~~~---~l~~l~~L~~L~l~~n~l~-~~~~-l~ 109 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG---------IQYLPNVTKLFLNGNK--LTDIK---PLANLKNLGWLFLDENKVK-DLSS-LK 109 (291)
T ss_dssp HTCCEEECTTSCCCCCTT---------GGGCTTCCEEECCSSC--CCCCG---GGTTCTTCCEEECCSSCCC-CGGG-GT
T ss_pred CcccEEEccCCCcccChh---------HhcCCCCCEEEccCCc--cCCCc---ccccCCCCCEEECCCCcCC-CChh-hc
Confidence 789999999998877753 5678999999999776 34444 4778899999999999854 3444 78
Q ss_pred CCCcccEEeccCCCCCccccccc-cCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEe
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDL 205 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 205 (254)
.+++|+.|++++|.+... +... .++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 110 ~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 899999999999876553 3332 47899999999999887 567888999999999998766543 888999999999
Q ss_pred cCCCCCcccCccccCCCCCcEEeccCCCCCCCC
Q 042890 206 HGCSNLQRLPECLGQLSSPITCNLAKTNIERIP 238 (254)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 238 (254)
++|.+.+ ++ .+..+++|+.|++++|.+...|
T Consensus 186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 186 SKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 9987755 33 3778999999999999876543
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=4.2e-17 Score=143.93 Aligned_cols=215 Identities=24% Similarity=0.230 Sum_probs=141.5
Q ss_pred cceeeeCCcccC----CCCcceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCc------------ch
Q 042890 4 VKELRLNPNTFT----KMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN------------DI 67 (254)
Q Consensus 4 ~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~------------~l 67 (254)
++.+++....+. .+++|++|++++|.+. .++. ..++|++|++++|.++.+|.. .+
T Consensus 63 L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~-------~lp~--~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l 133 (622)
T 3g06_A 63 ITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-------SLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133 (622)
T ss_dssp CSEEEECSCCCSCCCCCCTTCCEEEECSCCCS-------CCCC--CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCC
T ss_pred CcEEEecCCCCCCCCCcCCCCCEEEcCCCcCC-------cCCC--CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCC
Confidence 444444443333 2456777777777662 2222 115666666666665555432 11
Q ss_pred hhcchhhhcccccceehhhccCCceeecCC-CCccCC--------------cccccEEeccCCcCCCccCCCCCCCCccc
Q 042890 68 EQLWDRVKRYSKLNQIIHAACHKLIAKIPN-PTLMPR--------------MKKLVILNLRGSKSLKSLPSGIFNLEFLT 132 (254)
Q Consensus 68 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~-~~~~~~--------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 132 (254)
..++. .+++|++|++++|.. ..++. ...+.. +++|+.|++++|.+. .+|. .+++|+
T Consensus 134 ~~lp~---~l~~L~~L~Ls~N~l--~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~-~l~~---~~~~L~ 204 (622)
T 3g06_A 134 TSLPV---LPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA-SLPT---LPSELY 204 (622)
T ss_dssp SCCCC---CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred CcCCC---CCCCCCEEECcCCcC--CCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-CCCC---ccchhh
Confidence 11111 136777777776542 22222 002222 277888888888754 3554 247899
Q ss_pred EEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCc
Q 042890 133 KLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQ 212 (254)
Q Consensus 133 ~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 212 (254)
.|++++|.+. .+|... ++|+.|++++|.++.+| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.+.
T Consensus 205 ~L~L~~N~l~-~l~~~~-~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~- 274 (622)
T 3g06_A 205 KLWAYNNRLT-SLPALP-SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT- 274 (622)
T ss_dssp EEECCSSCCS-SCCCCC-TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-
T ss_pred EEECcCCccc-ccCCCC-CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-
Confidence 9999997754 555544 89999999999999988 45689999999999866 4554 5788999999998776
Q ss_pred ccCccccCCCCCcEEeccCCCCC-CCChhhhhhcc
Q 042890 213 RLPECLGQLSSPITCNLAKTNIE-RIPESIIQLFV 246 (254)
Q Consensus 213 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 246 (254)
.+|..+..+++|+.|++++|.+. ..|..+..+++
T Consensus 275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 275 RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 67888999999999999999987 44555554443
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=1.4e-20 Score=161.01 Aligned_cols=235 Identities=15% Similarity=0.043 Sum_probs=123.7
Q ss_pred cccCCCCcceEEEeeccccCCCccCcccccCCCC-C-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccC
Q 042890 12 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACH 89 (254)
Q Consensus 12 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~ 89 (254)
.+|..+++|++|++++|.+++..+ ..+...+. . ++|++|++.+|.++. ...+.++..+..+++|++|+++++.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~---~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGL--QLLCEGLLDPQCRLEKLQLEYCSLSA---ASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHH--HHHHHHHTSTTCCCCEEECTTSCCBG---GGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHccCCceeEEECCCCcCchHHH--HHHHHHHhcCCCcceEEECCCCCCCH---HHHHHHHHHHhhCCCCCEEECcCCC
Confidence 345677778888887777633221 11111111 1 567778887775432 2333444556666777777777654
Q ss_pred CceeecCCCCccC-----CcccccEEeccCCcCCCc----cCCCCCCCCcccEEeccCCCCCccc----ccc---ccCCc
Q 042890 90 KLIAKIPNPTLMP-----RMKKLVILNLRGSKSLKS----LPSGIFNLEFLTKLDLSGCSKLKRL----PEI---SSGNI 153 (254)
Q Consensus 90 ~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~----p~~---~~~~L 153 (254)
.. ...+. .+. ..++|++|++++|.+... ++..+..+++|+.|++++|.+.... ++. ..++|
T Consensus 182 i~-~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 182 IN-EAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp CH-HHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred cc-hHHHH--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence 21 11010 111 134666666666654332 3333445566666666665433211 010 12455
Q ss_pred CeEecccccccc-----cchhhhhccccCEEeccCCcCc-----------------------------cc----CCcccc
Q 042890 154 SWLFLRGIAIEE-----LPSSIERQLRLSWLDLSDCKRL-----------------------------KS----LPSSLY 195 (254)
Q Consensus 154 ~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~n~~~-----------------------------~~----~~~~l~ 195 (254)
+.|++++|.++. ++..+..+++|++|++++|.+. +. ++..+.
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 338 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence 566666555553 4444444555555555555443 21 223344
Q ss_pred CCCccCEEEecCCCCCcccCcccc----C-CCCCcEEeccCCCCC-----CCChhhhhhcccCcccccC
Q 042890 196 RLKSLGILDLHGCSNLQRLPECLG----Q-LSSPITCNLAKTNIE-----RIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 196 ~l~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~ls~ 254 (254)
.+++|+.|++++|.+.+..+..+. . .+.|+.|++++|.++ .++..+..+++|++|++++
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 456666777766655443222221 1 567777777777776 4566677777777777763
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=1.5e-17 Score=145.13 Aligned_cols=188 Identities=21% Similarity=0.214 Sum_probs=145.5
Q ss_pred cceEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCC
Q 042890 19 KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNP 98 (254)
Q Consensus 19 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 98 (254)
++++|++++|.++ .+|..+ .++|++|++++|.++.+| . .+++|++|+++++. +..+|
T Consensus 60 ~L~~L~Ls~n~L~-------~lp~~l-~~~L~~L~Ls~N~l~~ip-~----------~l~~L~~L~Ls~N~--l~~ip-- 116 (571)
T 3cvr_A 60 QFSELQLNRLNLS-------SLPDNL-PPQITVLEITQNALISLP-E----------LPASLEYLDACDNR--LSTLP-- 116 (571)
T ss_dssp TCSEEECCSSCCS-------CCCSCC-CTTCSEEECCSSCCSCCC-C----------CCTTCCEEECCSSC--CSCCC--
T ss_pred CccEEEeCCCCCC-------ccCHhH-cCCCCEEECcCCCCcccc-c----------ccCCCCEEEccCCC--CCCcc--
Confidence 8999999999883 244433 278999999999988777 3 36899999999775 34465
Q ss_pred CccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCE
Q 042890 99 TLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSW 178 (254)
Q Consensus 99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 178 (254)
.+.. +|++|++++|.+.+ +|. .+++|+.|++++|.+.. +|. ..++|+.|++++|.++.+|. +. ++|+.
T Consensus 117 -~l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~ 184 (571)
T 3cvr_A 117 -ELPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEA 184 (571)
T ss_dssp -CCCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCE
T ss_pred -hhhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC-cCCCcCEEECCCCCCCCcch-hh--CCCCE
Confidence 2333 99999999998655 666 67899999999987654 666 44899999999999999888 54 89999
Q ss_pred EeccCCcCcccCCccccCCCcc-------CEEEecCCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhhhcc
Q 042890 179 LDLSDCKRLKSLPSSLYRLKSL-------GILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQLFV 246 (254)
Q Consensus 179 L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 246 (254)
|++++|.+. .+|. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..++.
T Consensus 185 L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 185 LDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp EECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred EECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 999999876 5665 544 67 99999998775 57777777999999999999997 56776666544
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=2.4e-17 Score=143.96 Aligned_cols=174 Identities=22% Similarity=0.259 Sum_probs=143.8
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
.+++.|++++|.++.+|.. + +++|++|+++++. +..+| ..+++|++|++++|.+.+ +|. +.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~--------l--~~~L~~L~Ls~N~--l~~ip-----~~l~~L~~L~Ls~N~l~~-ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDN--------L--PPQITVLEITQNA--LISLP-----ELPASLEYLDACDNRLST-LPE-LP 119 (571)
T ss_dssp TTCSEEECCSSCCSCCCSC--------C--CTTCSEEECCSSC--CSCCC-----CCCTTCCEEECCSSCCSC-CCC-CC
T ss_pred CCccEEEeCCCCCCccCHh--------H--cCCCCEEECcCCC--Ccccc-----cccCCCCEEEccCCCCCC-cch-hh
Confidence 4899999999999888864 3 4789999999776 34554 347899999999998665 777 65
Q ss_pred CCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEec
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLH 206 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 206 (254)
. +|+.|++++|.+.+ +|. ..++|+.|++++|.++.+|. .+++|+.|++++|.+.+ +|. +. ++|+.|+++
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred c--CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 4 89999999988665 666 55899999999999999887 56899999999999776 666 55 899999999
Q ss_pred CCCCCcccCccccCCCCC-------cEEeccCCCCCCCChhhhhhcccCcccccC
Q 042890 207 GCSNLQRLPECLGQLSSP-------ITCNLAKTNIERIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 207 ~~~~~~~~~~~~~~l~~L-------~~L~l~~n~l~~l~~~~~~~~~L~~L~ls~ 254 (254)
+|.+. .+|. +.. +| +.|++++|.++.+|..+..+++|+.|++++
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 98776 5666 543 67 999999999999999999999999999874
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2.6e-17 Score=132.67 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=136.2
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
+..+++|++|++++|.+ ... +.+.. ++|++|++++|.++.+++ +..+++|++|+++++. .
T Consensus 42 ~~~l~~L~~L~l~~~~i-------~~~-~~~~~l~~L~~L~L~~n~l~~~~~---------l~~l~~L~~L~l~~n~--l 102 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDI-------KSV-QGIQYLPNVTKLFLNGNKLTDIKP---------LANLKNLGWLFLDENK--V 102 (291)
T ss_dssp HHHHHTCCEEECTTSCC-------CCC-TTGGGCTTCCEEECCSSCCCCCGG---------GTTCTTCCEEECCSSC--C
T ss_pred hhhcCcccEEEccCCCc-------ccC-hhHhcCCCCCEEEccCCccCCCcc---------cccCCCCCEEECCCCc--C
Confidence 45678899999999987 222 23555 899999999998877653 5678999999999776 4
Q ss_pred eecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc-cCCcCeEecccccccccchhhh
Q 042890 93 AKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIE 171 (254)
Q Consensus 93 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~l~~~~~ 171 (254)
..++ .+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.+... +... .++|+.|++++|.++.++. +.
T Consensus 103 ~~~~---~l~~l~~L~~L~L~~n~i~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 103 KDLS---SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp CCGG---GGTTCTTCCEEECTTSCCCC-CG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCh---hhccCCCCCEEECCCCcCCC-Ch-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hc
Confidence 4454 68889999999999998644 43 477899999999999876654 3332 5899999999999998876 88
Q ss_pred hccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCc
Q 042890 172 RQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQ 212 (254)
Q Consensus 172 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 212 (254)
.+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+..
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 88999999999998765 33 48889999999999987654
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=3.1e-19 Score=149.54 Aligned_cols=218 Identities=12% Similarity=0.072 Sum_probs=161.4
Q ss_pred ccCCCCcceEEEeeccccCCCccCcccccCC-------CCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceeh
Q 042890 13 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQD-------PGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQII 84 (254)
Q Consensus 13 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~ 84 (254)
.|..+++|++|++++|.+... ....|.. +.. ++|++|++++|.++. .+...++..+..+++|++|+
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l---~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~L~~L~ 128 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRV---KDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP---TAQEPLIDFLSKHTPLEHLY 128 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSC---GGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT---TTHHHHHHHHHHCTTCCEEE
T ss_pred HHHhCCCccEEeCcccccCcc---ccchhHHHHHHHHHHhhCCcccEEECCCCcCCH---HHHHHHHHHHHhCCCCCEEE
Confidence 366899999999999765211 0112222 245 999999999997653 34455666788999999999
Q ss_pred hhccCCce---eecCCCCccCCc---------ccccEEeccCCcCC-CccC---CCCCCCCcccEEeccCCCCCcc----
Q 042890 85 HAACHKLI---AKIPNPTLMPRM---------KKLVILNLRGSKSL-KSLP---SGIFNLEFLTKLDLSGCSKLKR---- 144 (254)
Q Consensus 85 l~~~~~~~---~~~~~~~~~~~~---------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~~---- 144 (254)
+++|.... ..++. .+..+ ++|++|++++|.+. ..++ ..+..+++|+.|++++|.+...
T Consensus 129 L~~n~l~~~~~~~l~~--~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 206 (386)
T 2ca6_A 129 LHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206 (386)
T ss_dssp CCSSCCHHHHHHHHHH--HHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred CcCCCCCHHHHHHHHH--HHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH
Confidence 99876421 11222 23333 89999999999865 3334 3466788999999999876632
Q ss_pred -cc-cc-ccCCcCeEecccccc-----cccchhhhhccccCEEeccCCcCccc----CCcccc--CCCccCEEEecCCCC
Q 042890 145 -LP-EI-SSGNISWLFLRGIAI-----EELPSSIERQLRLSWLDLSDCKRLKS----LPSSLY--RLKSLGILDLHGCSN 210 (254)
Q Consensus 145 -~p-~~-~~~~L~~L~l~~~~~-----~~l~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~--~l~~L~~L~l~~~~~ 210 (254)
.+ .. ..++|+.|++++|.+ ..+|..+..+++|+.|++++|.+.+. ++..+. .+++|+.|++++|.+
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 22 12 247899999999998 45788888999999999999998764 455563 489999999999988
Q ss_pred Cc----ccCccc-cCCCCCcEEeccCCCCCCCC
Q 042890 211 LQ----RLPECL-GQLSSPITCNLAKTNIERIP 238 (254)
Q Consensus 211 ~~----~~~~~~-~~l~~L~~L~l~~n~l~~l~ 238 (254)
.. .++..+ .++++|+.|++++|.+....
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77 477766 56899999999999998544
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=4.1e-17 Score=144.52 Aligned_cols=198 Identities=17% Similarity=0.145 Sum_probs=91.2
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccC-CCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLP-SGI 125 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~ 125 (254)
++|+++++++|.+..... .+.....+.+|+.+++..+. ....+. .+..+++|+.+++.++......+ ..+
T Consensus 371 ~~L~~L~ls~n~l~~~~~-----~~~~~~~~~~L~~L~~~~~~--~~~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGC-----CSQSDFGTISLKYLDLSFNG--VITMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp TTCCEEECCSSCCBEEEE-----CCHHHHSCSCCCEEECCSCS--EEEECS--CCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred cccccchhhccccccccc-----cccchhhhhhhhhhhccccc--cccccc--cccccccccchhhhhcccccccccccc
Confidence 667777777665432111 11123344455555554333 222332 44455555555555544322221 223
Q ss_pred CCCCcccEEeccCCCCCccccccc--cCCcCeEeccccccc--ccchhhhhccccCEEeccCCcCcccCCccccCCCccC
Q 042890 126 FNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE--ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLG 201 (254)
Q Consensus 126 ~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 201 (254)
..+++++.++++.|......+... ...++.+++++|.+. ..|..+..+++|+.|++++|.+.+..|..++++++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 344555555555544333322221 244555555555422 1333444455555555555555444444455555555
Q ss_pred EEEecCCCCCcccCccccCCCCCcEEeccCCCCCCC-Chhhhhh-cccCccccc
Q 042890 202 ILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERI-PESIIQL-FVSGYLLLS 253 (254)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~-~~L~~L~ls 253 (254)
.|++++|++.+..+..+..+++|+.|++++|.+..+ |..+..+ ++|++|+++
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 575 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence 555555554444444455555555555555555433 3334443 345555544
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.3e-17 Score=146.81 Aligned_cols=170 Identities=18% Similarity=0.202 Sum_probs=140.4
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
.+|+.|++.+|.+..++. +..+++|+.|+++++. ...++ .+..+++|+.|++++|.+. .++ .+.
T Consensus 43 ~~L~~L~l~~n~i~~l~~---------l~~l~~L~~L~Ls~N~--l~~~~---~l~~l~~L~~L~Ls~N~l~-~l~-~l~ 106 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQG---------IQYLPNVTKLFLNGNK--LTDIK---PLTNLKNLGWLFLDENKIK-DLS-SLK 106 (605)
T ss_dssp TTCCCCBCTTCCCCCCTT---------GGGCTTCCEEECTTSC--CCCCG---GGGGCTTCCEEECCSSCCC-CCT-TST
T ss_pred CCCCEEECcCCCCCCChH---------HccCCCCCEEEeeCCC--CCCCh---hhccCCCCCEEECcCCCCC-CCh-hhc
Confidence 889999999999887763 6789999999999776 44554 4788999999999999854 344 588
Q ss_pred CCCcccEEeccCCCCCccccccc-cCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEe
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDL 205 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 205 (254)
.+++|+.|++++|.+.. ++... +++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+..+ +..+++|+.|++
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred cCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 99999999999988665 34332 58999999999999988 567889999999999999777655 889999999999
Q ss_pred cCCCCCcccCccccCCCCCcEEeccCCCCCCCC
Q 042890 206 HGCSNLQRLPECLGQLSSPITCNLAKTNIERIP 238 (254)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 238 (254)
++|.+.+. ..+..+++|+.|++++|.+...|
T Consensus 183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 183 SKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred cCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 99877653 35788999999999999986543
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=1.2e-17 Score=147.93 Aligned_cols=207 Identities=19% Similarity=0.220 Sum_probs=159.9
Q ss_pred CCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCcee
Q 042890 15 TKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIA 93 (254)
Q Consensus 15 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~ 93 (254)
..+++|++|++++|.+.... ..+..... .+|+++++..+....++.. +..+++|+.+++..+...
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~----~~~~~~~~~~~L~~L~~~~~~~~~~~~~--------~~~l~~L~~l~l~~~~~~-- 433 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKG----CCSQSDFGTISLKYLDLSFNGVITMSSN--------FLGLEQLEHLDFQHSNLK-- 433 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEE----ECCHHHHSCSCCCEEECCSCSEEEECSC--------CTTCTTCCEEECTTSEEE--
T ss_pred ccccccccchhhcccccccc----ccccchhhhhhhhhhhcccccccccccc--------ccccccccchhhhhcccc--
Confidence 35677888888877762221 11111223 7899999998875555443 667889999998865532
Q ss_pred ecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccc-cccc--cCCcCeEeccccccccc-chh
Q 042890 94 KIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-PEIS--SGNISWLFLRGIAIEEL-PSS 169 (254)
Q Consensus 94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~--~~~L~~L~l~~~~~~~l-~~~ 169 (254)
.......+..++.++.+++++|.+....+..+..+++++.|++++|...... |... .++|+.|++++|.++.+ |..
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 2221226788999999999999877777777888999999999998755543 3322 47899999999999976 456
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCC-CCCcEEeccCCCCC
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQL-SSPITCNLAKTNIE 235 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~ 235 (254)
+.++++|+.|++++|++.+..+..+.++++|+.|++++|++.+..|..+..+ ++|+.|++++|++.
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 8899999999999999888778889999999999999999998889988887 68999999999863
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=6.2e-20 Score=157.05 Aligned_cols=168 Identities=15% Similarity=0.055 Sum_probs=82.8
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC--CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCc
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKL 91 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~ 91 (254)
|..+++|++|++++|.+++..+ ..+...+.. .+|++|++++|.++ +.+.+.++..+..+++|++|+++++.-.
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~L~~n~i~---~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGV--HCVLQGLQTPSCKIQKLSLQNCCLT---GAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHH--HHHHHTTCSTTCCCCEEECTTSCCB---GGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHhCCCcCEEeCCCCcCChHHH--HHHHHHHhhCCCceeEEEccCCCCC---HHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 4445666666666666532211 112222332 25777777777543 2233344455666777777777755421
Q ss_pred ee---ecCCCCccCCcccccEEeccCCcCCCc----cCCCCCCCCcccEEeccCCCCCccccccc-------cCCcCeEe
Q 042890 92 IA---KIPNPTLMPRMKKLVILNLRGSKSLKS----LPSGIFNLEFLTKLDLSGCSKLKRLPEIS-------SGNISWLF 157 (254)
Q Consensus 92 ~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-------~~~L~~L~ 157 (254)
.. .+.. ......++|++|++++|.+... ++..+..+++|+.|++++|.+....+... .++|+.|+
T Consensus 127 ~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 127 DAGLQLLCE-GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHH-HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hHHHHHHHH-HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 00 0110 0011234566666666654432 23334445666666666665433211110 13566666
Q ss_pred cccccccc-----cchhhhhccccCEEeccCCcCc
Q 042890 158 LRGIAIEE-----LPSSIERQLRLSWLDLSDCKRL 187 (254)
Q Consensus 158 l~~~~~~~-----l~~~~~~~~~L~~L~l~~n~~~ 187 (254)
+++|.++. ++..+..+++|++|++++|.+.
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 66665553 3444555556666666665543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=5.5e-17 Score=142.93 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=139.3
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCce
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLI 92 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~ 92 (254)
+..+++|+.|++++|.+ ..++ .+.. ++|+.|+|++|.+..+++ +..+++|+.|+++++. +
T Consensus 39 ~~~L~~L~~L~l~~n~i-------~~l~-~l~~l~~L~~L~Ls~N~l~~~~~---------l~~l~~L~~L~Ls~N~--l 99 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDI-------KSVQ-GIQYLPNVTKLFLNGNKLTDIKP---------LTNLKNLGWLFLDENK--I 99 (605)
T ss_dssp HHHHTTCCCCBCTTCCC-------CCCT-TGGGCTTCCEEECTTSCCCCCGG---------GGGCTTCCEEECCSSC--C
T ss_pred hhcCCCCCEEECcCCCC-------CCCh-HHccCCCCCEEEeeCCCCCCChh---------hccCCCCCEEECcCCC--C
Confidence 45688999999999987 2222 4556 999999999998887764 5789999999999776 4
Q ss_pred eecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc-ccCCcCeEecccccccccchhhh
Q 042890 93 AKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI-SSGNISWLFLRGIAIEELPSSIE 171 (254)
Q Consensus 93 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~~L~~L~l~~~~~~~l~~~~~ 171 (254)
..++ .+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+... +.. .+++|+.|++++|.++.+++ +.
T Consensus 100 ~~l~---~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~ 172 (605)
T 1m9s_A 100 KDLS---SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LA 172 (605)
T ss_dssp CCCT---TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCh---hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hc
Confidence 4444 78889999999999998654 44 488899999999999876654 333 25899999999999998776 88
Q ss_pred hccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcc
Q 042890 172 RQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQR 213 (254)
Q Consensus 172 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 213 (254)
.+++|+.|++++|.+.+. +.+..+++|+.|++++|.+...
T Consensus 173 ~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 899999999999987663 3588999999999999876543
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=126.57 Aligned_cols=146 Identities=17% Similarity=0.179 Sum_probs=68.3
Q ss_pred CcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc-cCCcCeEecccccccc-cchhhhhccccCEEe
Q 042890 103 RMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEE-LPSSIERQLRLSWLD 180 (254)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~ 180 (254)
.+++|+.|++++|.+. .++ .+..+++|+.|++++|.. ...+... .++|++|++++|.++. .+..+..+++|+.|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3444555555554422 333 244444555555554422 1111111 2445555555555442 333444555555555
Q ss_pred ccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCChhhhhhcccCccccc
Q 042890 181 LSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPESIIQLFVSGYLLLS 253 (254)
Q Consensus 181 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ls 253 (254)
+++|.+.+..+..+..+++|+.|++++|...+.++ .+..+++|+.|++++|.+..++ .+..+++|++|+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEEC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEee
Confidence 55555544444445555555555555554223233 3444555555555555555444 34555555555544
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.3e-19 Score=150.58 Aligned_cols=235 Identities=14% Similarity=0.021 Sum_probs=129.6
Q ss_pred cCCCCcceEEEeeccccCCCccCcccccCCCCC-C-ceeeeeeCCCCCCCCCCcchhhcchhhhcc-cccceehhhccCC
Q 042890 14 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-A-EVKYLHWHGYPLKSLPSNDIEQLWDRVKRY-SKLNQIIHAACHK 90 (254)
Q Consensus 14 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~-~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~-~~L~~l~l~~~~~ 90 (254)
+...++|++|++++|.+++... ..+...+.. + +|++|++++|.++.... ..+...+... ++|++|+++++.-
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNS---DELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCH---HHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHH---HHHHHHHhccCCCccEEECcCCcC
Confidence 3444558888888888743321 111133333 4 78888888886654432 2222223333 7788888876652
Q ss_pred ceeecCC--CCccCCc-ccccEEeccCCcCCCccCCC----CCC-CCcccEEeccCCCCCcccc----ccc--c-CCcCe
Q 042890 91 LIAKIPN--PTLMPRM-KKLVILNLRGSKSLKSLPSG----IFN-LEFLTKLDLSGCSKLKRLP----EIS--S-GNISW 155 (254)
Q Consensus 91 ~~~~~~~--~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~p----~~~--~-~~L~~ 155 (254)
. ...+. ...+..+ ++|++|++++|.+....+.. +.. .++|+.|++++|.+....+ ... . .+|+.
T Consensus 93 ~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 93 S-YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp G-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred C-hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence 1 11111 0013333 67888888887754332222 223 2477788888776553221 111 1 37777
Q ss_pred Eecccccccccch-----hhhhc-cccCEEeccCCcCccc----CCccccC-CCccCEEEecCCCCCcccC----ccccC
Q 042890 156 LFLRGIAIEELPS-----SIERQ-LRLSWLDLSDCKRLKS----LPSSLYR-LKSLGILDLHGCSNLQRLP----ECLGQ 220 (254)
Q Consensus 156 L~l~~~~~~~l~~-----~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~~~~~~~~~----~~~~~ 220 (254)
|++++|.++.... .+... ++|+.|++++|.+.+. ++..+.. .++|+.|++++|.+.+..+ ..+..
T Consensus 172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 7887777764332 23334 4777888877776552 3334444 3477777877776654322 23455
Q ss_pred CCCCcEEeccCCCCCCC--------ChhhhhhcccCcccccC
Q 042890 221 LSSPITCNLAKTNIERI--------PESIIQLFVSGYLLLSY 254 (254)
Q Consensus 221 l~~L~~L~l~~n~l~~l--------~~~~~~~~~L~~L~ls~ 254 (254)
+++|+.|++++|.+..+ +..+..+++|++|++++
T Consensus 252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 67777777777774322 22344566666666653
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=3.5e-17 Score=130.07 Aligned_cols=147 Identities=22% Similarity=0.207 Sum_probs=65.3
Q ss_pred hcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcC
Q 042890 75 KRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNIS 154 (254)
Q Consensus 75 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~ 154 (254)
..+++|+.|+++++. ...++ .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.. +|.....+|+
T Consensus 38 ~~l~~L~~L~l~~n~--i~~l~---~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~ 109 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN--IQSLA---GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLS 109 (263)
T ss_dssp HHHTTCSEEECTTSC--CCCCT---TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCC
T ss_pred hhcCcCcEEECcCCC--cccch---HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC-cCccccCccc
Confidence 344444444444432 22222 3444445555555554432 2222 4444555555555544322 2222124455
Q ss_pred eEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCC
Q 042890 155 WLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 155 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 234 (254)
.|++++|.++.++ .+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 5555555554443 244445555555555544332 1 344455555555555444333 3344455555555555544
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=7.3e-17 Score=123.68 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=87.9
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
++|++|++++|.++.++.. .+..+++|++|+++++. ...++. ..|..+++|++|++++|.+....+..+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG-------VFDELTSLTQLYLGGNK--LQSLPN-GVFNKLTSLTYLNLSTNQLQSLPNGVFD 97 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-------TTTTCTTCSEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEEcCCCccCcCChh-------hhcccccCcEEECCCCc--cCccCh-hhcCCCCCcCEEECCCCcCCccCHhHhc
Confidence 5677777777776666543 24556677777777554 334332 1456667777777777765443344455
Q ss_pred CCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEE
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGIL 203 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 203 (254)
.+++|+.|++++|.+....+.. ..++|+.|++++|.++.++.. +..+++|+.|++++|.+. +.++.|+.+
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L 170 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYL 170 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHH
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHH
Confidence 6667777777666544332221 124556666666665555443 445556666666655432 223445555
Q ss_pred EecCCCCCcccCccccCC
Q 042890 204 DLHGCSNLQRLPECLGQL 221 (254)
Q Consensus 204 ~l~~~~~~~~~~~~~~~l 221 (254)
+++.|.+.+.+|..++.+
T Consensus 171 ~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 171 SEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHHHCTTTBBCTTSSB
T ss_pred HHHHHhCCceeeccCccc
Confidence 555555555555554433
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-16 Score=121.18 Aligned_cols=150 Identities=14% Similarity=0.161 Sum_probs=83.4
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
++|++|++++|.++.++. +..+++|++|+++++. ...++ .+..+++|++|++++|.+....+..+.
T Consensus 44 ~~L~~L~l~~n~i~~l~~---------l~~l~~L~~L~l~~n~--~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~ 109 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTG---------IEYAHNIKDLTINNIH--ATNYN---PISGLSNLERLRIMGKDVTSDKIPNLS 109 (197)
T ss_dssp HTCCEEEEESSCCSCCTT---------GGGCTTCSEEEEESCC--CSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCT
T ss_pred CCccEEeccCCCccChHH---------HhcCCCCCEEEccCCC--CCcch---hhhcCCCCCEEEeECCccCcccChhhc
Confidence 445555555555444431 3444555555555442 12221 344455555555555544333344444
Q ss_pred CCCcccEEeccCCCCCccccccccCCcCeEecccccccc-cchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEe
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEE-LPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDL 205 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 205 (254)
.+++|+.|+ +++|.++. .|..+..+++|+.|++++|.....++ .+..+++|+.|++
T Consensus 110 ~l~~L~~L~----------------------Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 110 GLTSLTLLD----------------------ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp TCTTCCEEE----------------------CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred CCCCCCEEE----------------------ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 444444444 44454442 45556677788888888877444454 4777788888888
Q ss_pred cCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 206 HGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
++|.+.+ ++ .+..+++|+.|++++|.+.
T Consensus 167 ~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 8876654 33 4667788888888887764
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=3.9e-16 Score=120.72 Aligned_cols=147 Identities=21% Similarity=0.243 Sum_probs=83.8
Q ss_pred eeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCC
Q 042890 50 KYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLE 129 (254)
Q Consensus 50 ~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 129 (254)
+.+++.++.++.+|.. + .++++.|+++++. +..++. ..|..+++|+.|++++|.+....|..+.+++
T Consensus 14 ~~v~c~~~~l~~iP~~--------l--~~~l~~L~l~~n~--i~~i~~-~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 80 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN--------L--PETITEIRLEQNT--IKVIPP-GAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80 (220)
T ss_dssp TEEECTTSCCSSCCSS--------C--CTTCCEEECCSSC--CCEECT-TSSTTCTTCCEEECCSSCCCEECTTTTTTCS
T ss_pred CEEEcCCCCcCcCCCc--------c--CcCCCEEECCCCc--CCCcCH-hHhhCCCCCCEEECCCCcCCCcCHHHhhCCc
Confidence 5677777777777653 2 2567777777654 334431 2566777777777777776555566677777
Q ss_pred cccEEeccCCCCCccccccc---cCCcCeEecccccccccc-hhhhhccccCEEeccCCcCcccCCccccCCCccCEEEe
Q 042890 130 FLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELP-SSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDL 205 (254)
Q Consensus 130 ~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 205 (254)
+|+.|++++|.+. .+|... ..+|+.|++++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|+.+++
T Consensus 81 ~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 81 SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 7777777776544 233221 245555555555555442 23444555555555555544444444445555555555
Q ss_pred cCCCC
Q 042890 206 HGCSN 210 (254)
Q Consensus 206 ~~~~~ 210 (254)
++|.+
T Consensus 160 ~~N~~ 164 (220)
T 2v9t_B 160 AQNPF 164 (220)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 55443
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=1.8e-18 Score=143.77 Aligned_cols=220 Identities=15% Similarity=0.033 Sum_probs=154.9
Q ss_pred EEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhccc-ccceehhhccCCceeecCCCC
Q 042890 22 FLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYS-KLNQIIHAACHKLIAKIPNPT 99 (254)
Q Consensus 22 ~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~ 99 (254)
+++++.+.+.+ ..+..+.. ++|++|++++|.++..+. +.+..++..++ +|++|+++++.-. ...+.
T Consensus 2 ~~~ls~n~~~~------~~~~~~~~~~~L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~-- 69 (362)
T 3goz_A 2 NYKLTLHPGSN------PVEEFTSIPHGVTSLDLSLNNLYSIST---VELIQAFANTPASVTSLNLSGNSLG-FKNSD-- 69 (362)
T ss_dssp EEECCCCTTCC------HHHHHHTSCTTCCEEECTTSCGGGSCH---HHHHHHHHTCCTTCCEEECCSSCGG-GSCHH--
T ss_pred ccccccccchH------HHHHHHhCCCCceEEEccCCCCChHHH---HHHHHHHHhCCCceeEEECcCCCCC-HHHHH--
Confidence 45677777632 23333445 669999999998766553 33445577888 8999999987532 22122
Q ss_pred ccCCc-----ccccEEeccCCcCCCccCCC----CCCC-CcccEEeccCCCCCccccccc-------cCCcCeEeccccc
Q 042890 100 LMPRM-----KKLVILNLRGSKSLKSLPSG----IFNL-EFLTKLDLSGCSKLKRLPEIS-------SGNISWLFLRGIA 162 (254)
Q Consensus 100 ~~~~~-----~~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~p~~~-------~~~L~~L~l~~~~ 162 (254)
.+..+ ++|++|++++|.+....+.. +..+ ++|+.|++++|.+....+... ..+|++|++++|.
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 34443 89999999999865444432 3344 799999999988655433211 1589999999999
Q ss_pred cc-----ccchhhhhcc-ccCEEeccCCcCcccCCc----cccCC-CccCEEEecCCCCCcc----cCccccC-CCCCcE
Q 042890 163 IE-----ELPSSIERQL-RLSWLDLSDCKRLKSLPS----SLYRL-KSLGILDLHGCSNLQR----LPECLGQ-LSSPIT 226 (254)
Q Consensus 163 ~~-----~l~~~~~~~~-~L~~L~l~~n~~~~~~~~----~l~~l-~~L~~L~l~~~~~~~~----~~~~~~~-l~~L~~ 226 (254)
++ .++..+...+ +|++|++++|.+.+..+. .+..+ ++|+.|++++|.+.+. ++..+.. .++|+.
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 88 4455556665 999999999998765543 34455 5999999999987653 4445554 469999
Q ss_pred EeccCCCCCCCCh-----hhhhhcccCccccc
Q 042890 227 CNLAKTNIERIPE-----SIIQLFVSGYLLLS 253 (254)
Q Consensus 227 L~l~~n~l~~l~~-----~~~~~~~L~~L~ls 253 (254)
|++++|.+...+. .+..+++|++|+++
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 9999999975532 34567889999876
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=2e-16 Score=130.87 Aligned_cols=213 Identities=18% Similarity=0.139 Sum_probs=152.0
Q ss_pred eEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCc
Q 042890 21 RFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTL 100 (254)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 100 (254)
++++.+++.+ ..+|..+ .+++++|+|++|.++.+|.. ++..+++|++|+++++... ..++. ..
T Consensus 12 ~~v~C~~~~L-------t~iP~~l-~~~l~~L~Ls~N~i~~i~~~-------~f~~l~~L~~L~Ls~N~i~-~~i~~-~~ 74 (350)
T 4ay9_X 12 RVFLCQESKV-------TEIPSDL-PRNAIELRFVLTKLRVIQKG-------AFSGFGDLEKIEISQNDVL-EVIEA-DV 74 (350)
T ss_dssp TEEEEESTTC-------CSCCTTC-CTTCSEEEEESCCCSEECTT-------SSTTCTTCCEEEEECCTTC-CEECT-TS
T ss_pred CEEEecCCCC-------CccCcCc-CCCCCEEEccCCcCCCcCHH-------HHcCCCCCCEEECcCCCCC-CccCh-hH
Confidence 4556666655 4455544 26899999999999888764 3788999999999987642 34442 36
Q ss_pred cCCcccccE-EeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEeccc-ccccccchh-hhhc-c
Q 042890 101 MPRMKKLVI-LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRG-IAIEELPSS-IERQ-L 174 (254)
Q Consensus 101 ~~~~~~L~~-L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~-~~~~~l~~~-~~~~-~ 174 (254)
|.+++++++ +.+.+|.+....+..+..+++|+.|++++|.+....+... ...+..+++.+ +.++.++.. +... .
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 788888776 5555676555556778899999999999987554333222 24556777755 567777654 4444 4
Q ss_pred ccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccC-ccccCCCCCcEEeccCCCCCCCChh-hhhhcccCccc
Q 042890 175 RLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLP-ECLGQLSSPITCNLAKTNIERIPES-IIQLFVSGYLL 251 (254)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~ 251 (254)
.++.|++++|.+.. ++.......+|+.+++.+++..+.+| .+|..+++|+.|++++|.++.+|.. +..+++|+.++
T Consensus 155 ~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 155 ESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp SCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred hhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc
Confidence 68899999998765 44444566789999998766666665 5678999999999999999988764 55555555444
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=6.6e-16 Score=119.42 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=77.3
Q ss_pred eeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCC
Q 042890 50 KYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLE 129 (254)
Q Consensus 50 ~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 129 (254)
+.++++++.++.+|.. + .+.+++|+++++. ...++....|..+++|++|++++|.+.+..+..+..++
T Consensus 14 ~~l~~s~n~l~~iP~~--------~--~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~ 81 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH--------I--PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81 (220)
T ss_dssp TEEECCSSCCSSCCSC--------C--CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CEeEeCCCCcccCccC--------C--CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC
Confidence 4677777776666643 1 2345666666554 33332111466777777777777775544444566677
Q ss_pred cccEEeccCCCCCccccccc--cCCcCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEec
Q 042890 130 FLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLH 206 (254)
Q Consensus 130 ~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 206 (254)
+|+.|++++|.+....+... .++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..|..+..+++|+.++++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 77777777655433222111 23444444444444433 2234444445555555554444444444444455555554
Q ss_pred CCCC
Q 042890 207 GCSN 210 (254)
Q Consensus 207 ~~~~ 210 (254)
+|.+
T Consensus 162 ~N~l 165 (220)
T 2v70_A 162 ANPF 165 (220)
T ss_dssp SCCE
T ss_pred CcCC
Confidence 4443
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=7.8e-16 Score=119.02 Aligned_cols=150 Identities=17% Similarity=0.091 Sum_probs=121.1
Q ss_pred cceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccC-CCCCCCCcccEEeccCCCCCccccccc--cCCcCeE
Q 042890 80 LNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWL 156 (254)
Q Consensus 80 L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L 156 (254)
-+.++++++. ...+|. .+ ...+++|++++|.+....+ ..+..+++|+.|++++|.+....+... ..+|++|
T Consensus 13 ~~~l~~s~n~--l~~iP~--~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 13 GTTVDCSNQK--LNKIPE--HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEI 86 (220)
T ss_dssp TTEEECCSSC--CSSCCS--CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCEeEeCCCC--cccCcc--CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEE
Confidence 3567777544 455664 44 3467899999998665534 347789999999999988665444222 4789999
Q ss_pred ecccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 157 FLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 157 ~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
++++|.++.++.. +..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999988765 788999999999999988887888999999999999999888888888999999999999999975
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.8e-16 Score=125.93 Aligned_cols=165 Identities=19% Similarity=0.113 Sum_probs=131.5
Q ss_pred cccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccccCCcCe
Q 042890 76 RYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISW 155 (254)
Q Consensus 76 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~ 155 (254)
.+.++..++++++. ...++ .+..+++|+.|++++|.+ ..++ .+..+++|+.|++++|.+....+-..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~--i~~~~---~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQS--VTDLV---SQKELSGVQNFNGDNSNI-QSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSC--TTSEE---CHHHHTTCSEEECTTSCC-CCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCE
T ss_pred HHHHHHHHHhcCCC--ccccc---chhhcCcCcEEECcCCCc-ccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCE
Confidence 45566667777544 33333 466789999999999985 4556 58889999999999987665444223589999
Q ss_pred EecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 156 LFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 156 L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
|++++|.++.+|.... ++|+.|++++|.+.+ + +.+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.
T Consensus 90 L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 90 LSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp EECCSSCCSCCTTCCC--SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCCcCcccc--CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 9999999998876443 899999999998766 3 3588999999999999887654 3 5788999999999999999
Q ss_pred CCChhhhhhcccCcccccC
Q 042890 236 RIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 236 ~l~~~~~~~~~L~~L~ls~ 254 (254)
.+ ..+..+++|+.|++++
T Consensus 164 ~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEE
T ss_pred ch-HHhccCCCCCEEeCCC
Confidence 77 5688899999998863
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=2e-15 Score=117.43 Aligned_cols=150 Identities=21% Similarity=0.154 Sum_probs=89.6
Q ss_pred ceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeec-CCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 48 EVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKI-PNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 48 ~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
.-+.++.+++.++.+|.. + .++|++|+++++. +..+ +. .|..+++|++|++++|.+....+..+.
T Consensus 20 s~~~v~c~~~~l~~ip~~--------~--~~~L~~L~Ls~n~--i~~~~~~--~~~~l~~L~~L~L~~N~l~~i~~~~~~ 85 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG--------I--PTNAQILYLHDNQ--ITKLEPG--VFDSLINLKELYLGSNQLGALPVGVFD 85 (229)
T ss_dssp ETTEEECTTSCCSSCCSC--------C--CTTCSEEECCSSC--CCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred eCCEeEccCCCcCccCCC--------C--CCCCCEEEcCCCc--cCccCHH--HhhCccCCcEEECCCCCCCCcChhhcc
Confidence 345677777777777653 2 3667777777654 2333 33 566777777777777775333334456
Q ss_pred CCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEE
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILD 204 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 204 (254)
.+++|+.|++++|.+....+.. .+++|+.|++++|.++.+|..+..+++|+.|++++|.+....+..+..+++|+.++
T Consensus 86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 6777777777776544332221 13566666666666666666666666666666666665544444455666666666
Q ss_pred ecCCCCC
Q 042890 205 LHGCSNL 211 (254)
Q Consensus 205 l~~~~~~ 211 (254)
+.+|.+.
T Consensus 166 l~~N~~~ 172 (229)
T 3e6j_A 166 LFGNPWD 172 (229)
T ss_dssp CTTSCBC
T ss_pred eeCCCcc
Confidence 6665543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.9e-15 Score=116.87 Aligned_cols=149 Identities=21% Similarity=0.204 Sum_probs=123.4
Q ss_pred ceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEec
Q 042890 81 NQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFL 158 (254)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l 158 (254)
+.++.++.. ...+|. .+. +.++.|++++|.+....+..+..+++|+.|++++|.+....|... ..+|++|++
T Consensus 14 ~~v~c~~~~--l~~iP~--~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKG--LTEIPT--NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSC--CSSCCS--SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCC--cCcCCC--ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 455655443 455664 443 689999999999765555678899999999999988776555443 488999999
Q ss_pred ccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 159 RGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 159 ~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999998876 678999999999999988887888999999999999999888877778889999999999999974
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=7.3e-19 Score=153.90 Aligned_cols=192 Identities=14% Similarity=0.046 Sum_probs=137.6
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccC------------CceeecCCCCccCCcccccEEe-cc
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACH------------KLIAKIPNPTLMPRMKKLVILN-LR 113 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~------------~~~~~~~~~~~~~~~~~L~~L~-l~ 113 (254)
+.|+.|++++|.++.+| ..+..+++|++|+++++. +..+..|. .++.+++|+.|+ ++
T Consensus 349 ~~L~~L~Ls~n~L~~Lp--------~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~--~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQ--------SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMR 418 (567)
T ss_dssp TTSSSCCCCHHHHHHHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH--HHHHHHHHHHHCGGG
T ss_pred ccceeccCChhhHHhhH--------HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH--HHHHHHhcccCcchh
Confidence 77777777777554443 347777777777765432 01223333 556677777777 44
Q ss_pred CCcCCCccCC------CCCC--CCcccEEeccCCCCCccccccc-cCCcCeEecccccccccchhhhhccccCEEeccCC
Q 042890 114 GSKSLKSLPS------GIFN--LEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDC 184 (254)
Q Consensus 114 ~~~~~~~~~~------~~~~--l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n 184 (254)
.|.+ ..++. .+.. ...|+.|++++|.+.+ +|... +++|+.|++++|.++.+|..+..+++|+.|++++|
T Consensus 419 ~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 419 AAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hccc-chhhhhhhhcccccccCccCceEEEecCCCCCC-CcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC
Confidence 4321 11110 0111 1258889999876554 56533 47899999999999999999999999999999999
Q ss_pred cCcccCCccccCCCccCEEEecCCCCCccc-CccccCCCCCcEEeccCCCCCCCChh----hhhhcccCcccc
Q 042890 185 KRLKSLPSSLYRLKSLGILDLHGCSNLQRL-PECLGQLSSPITCNLAKTNIERIPES----IIQLFVSGYLLL 252 (254)
Q Consensus 185 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~~----~~~~~~L~~L~l 252 (254)
.+.+ +| .++++++|+.|++++|.+.+.. |..+..+++|+.|++++|.+..+|.. ...+++|+.|++
T Consensus 497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9776 66 7999999999999999887776 88999999999999999999866543 345788988864
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=2.2e-15 Score=125.02 Aligned_cols=174 Identities=18% Similarity=0.097 Sum_probs=121.4
Q ss_pred eeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccC-CcccccEEeccCCcCCCccCCCCCC
Q 042890 49 VKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMP-RMKKLVILNLRGSKSLKSLPSGIFN 127 (254)
Q Consensus 49 L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 127 (254)
-+.++++++.++.+|.. + ...++.|+++++. +..++. ..+. .+++|+.|++++|.+....+..+..
T Consensus 20 ~~~l~c~~~~l~~iP~~--------~--~~~l~~L~Ls~N~--l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS--------L--PSYTALLDLSHNN--LSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TTEEECCSSCCSSCCSS--------C--CTTCSEEECCSSC--CCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCEEEeCCCCcCccCcc--------C--CCCCCEEECCCCC--CCccCh-hhhhhcccccCEEECCCCcCCccChhhccC
Confidence 36888999888888864 2 3468889999765 445543 2565 8899999999999876555667888
Q ss_pred CCcccEEeccCCCCCccccccc--cCCcCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccc---cCCCccC
Q 042890 128 LEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSL---YRLKSLG 201 (254)
Q Consensus 128 l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~l~~L~ 201 (254)
+++|++|++++|.+....+... +.+|+.|++++|.++.+ |..+..+++|+.|++++|.+....+..+ ..+++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 8999999999977554333222 36788888888888866 4457777888888888887655333333 4577888
Q ss_pred EEEecCCCCCcccCccccCCCC--CcEEeccCCCCC
Q 042890 202 ILDLHGCSNLQRLPECLGQLSS--PITCNLAKTNIE 235 (254)
Q Consensus 202 ~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~n~l~ 235 (254)
.|++++|.+....+..+..++. ++.|++.+|++.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 8888887766544455555655 367888887764
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.6e-15 Score=114.92 Aligned_cols=176 Identities=16% Similarity=0.074 Sum_probs=133.6
Q ss_pred eeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCC
Q 042890 50 KYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLE 129 (254)
Q Consensus 50 ~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 129 (254)
+.++..++.++.+|.. ..++|++|+++++. ...++. ..+..+++|++|++++|.+....+..+..++
T Consensus 10 ~~v~c~~~~l~~~p~~----------~~~~l~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG----------IPAQTTYLDLETNS--LKSLPN-GVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76 (208)
T ss_dssp TEEECCSSCCSSCCSC----------CCTTCSEEECCSSC--CCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CEEEecCCCccCCCCC----------CCCCCcEEEcCCCc--cCcCCh-hhhcccccCcEEECCCCccCccChhhcCCCC
Confidence 4667777777777754 24689999999775 344442 2578899999999999986654455567899
Q ss_pred cccEEeccCCCCCcccccc--ccCCcCeEecccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEec
Q 042890 130 FLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLH 206 (254)
Q Consensus 130 ~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 206 (254)
+|++|++++|.+....+.. ..++|++|++++|.++.++.. +..+++|+.|++++|.+.+..+..+..+++|+.++++
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 9999999998766443322 247899999999999987765 6788999999999998776655567889999999999
Q ss_pred CCCCCcccCccccCCCCCcEEeccCCCCC-CCChhhhhhc
Q 042890 207 GCSNLQRLPECLGQLSSPITCNLAKTNIE-RIPESIIQLF 245 (254)
Q Consensus 207 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 245 (254)
+|.+. +.++.|+.|+++.|.+. .+|.+++.++
T Consensus 157 ~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 157 DNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp SCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 87443 45678899999888886 6777666554
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=1.7e-15 Score=112.10 Aligned_cols=136 Identities=20% Similarity=0.112 Sum_probs=101.1
Q ss_pred cccccEEeccCCcCC-CccCCCCCCCCcccEEeccCCCCCccccccc-cCCcCeEecccccccc-cchhhhhccccCEEe
Q 042890 104 MKKLVILNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEE-LPSSIERQLRLSWLD 180 (254)
Q Consensus 104 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~ 180 (254)
.++|++|++++|.+. +.+|..+..+++|+.|++++|.+... +... .++|++|++++|.++. +|..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 356777777777754 46666666777777777777765444 2222 4677788888888776 677777789999999
Q ss_pred ccCCcCccc-CCccccCCCccCEEEecCCCCCcccC---ccccCCCCCcEEeccCCCCCCCChh
Q 042890 181 LSDCKRLKS-LPSSLYRLKSLGILDLHGCSNLQRLP---ECLGQLSSPITCNLAKTNIERIPES 240 (254)
Q Consensus 181 l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~l~~~ 240 (254)
+++|.+.+. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++.+|.+..+|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999987663 22568889999999999987765544 4678899999999999998877754
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=5.1e-15 Score=115.13 Aligned_cols=129 Identities=24% Similarity=0.153 Sum_probs=71.5
Q ss_pred ccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccchh-hhhccccCEEe
Q 042890 105 KKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERQLRLSWLD 180 (254)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~ 180 (254)
++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|... .++|+.|++++|.++.++.. +..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 55666666666554444555555666666666665542 222211 25566666666666655443 45556666666
Q ss_pred ccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 181 LSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 181 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++.+|.+.
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6666544 44555555666666666665554444444555666666666666553
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=9.7e-16 Score=127.20 Aligned_cols=173 Identities=18% Similarity=0.127 Sum_probs=128.7
Q ss_pred eEEEeeccccCCCccCcccccCCCCCCceeeeeeCCCCCCCCCCcchhhcchhhh-cccccceehhhccCCceeecCCCC
Q 042890 21 RFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNDIEQLWDRVK-RYSKLNQIIHAACHKLIAKIPNPT 99 (254)
Q Consensus 21 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~ 99 (254)
++++++++.+ ..+|..+. ..++.|+|++|.++.++.. .+. .+++|++|+++++. +..++. .
T Consensus 21 ~~l~c~~~~l-------~~iP~~~~-~~l~~L~Ls~N~l~~l~~~-------~~~~~l~~L~~L~L~~N~--i~~i~~-~ 82 (361)
T 2xot_A 21 NILSCSKQQL-------PNVPQSLP-SYTALLDLSHNNLSRLRAE-------WTPTRLTNLHSLLLSHNH--LNFISS-E 82 (361)
T ss_dssp TEEECCSSCC-------SSCCSSCC-TTCSEEECCSSCCCEECTT-------SSSSCCTTCCEEECCSSC--CCEECT-T
T ss_pred CEEEeCCCCc-------CccCccCC-CCCCEEECCCCCCCccChh-------hhhhcccccCEEECCCCc--CCccCh-h
Confidence 5677777766 34454322 5688999999988877653 244 78899999999765 445542 2
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccchhh----hhc
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSI----ERQ 173 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~~----~~~ 173 (254)
.|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+... +.+|+.|++++|.++.+|..+ ..+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence 68889999999999998665555668889999999999988665544333 478999999999999888764 568
Q ss_pred cccCEEeccCCcCcccCCccccCCCc--cCEEEecCCCCC
Q 042890 174 LRLSWLDLSDCKRLKSLPSSLYRLKS--LGILDLHGCSNL 211 (254)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~~~~~ 211 (254)
++|+.|++++|.+....+..+..++. ++.+++.+|.+.
T Consensus 163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 89999999999877654455667776 488999988764
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=6.3e-15 Score=106.79 Aligned_cols=127 Identities=20% Similarity=0.090 Sum_probs=74.4
Q ss_pred cccccEEeccCCcCC-CccCCCCCCCCcccEEeccCCCCCccccccccCCcCeEecccccccccchhhhhccccCEEecc
Q 042890 104 MKKLVILNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLS 182 (254)
Q Consensus 104 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 182 (254)
.++++.|++++|.+. +.+|..+..+++|+.|++++|.+... ..+..+++|+.|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~l~~L~~L~Ls 72 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----------------------ANLPKLNKLKKLELS 72 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----------------------TTCCCCTTCCEEECC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----------------------hhhhcCCCCCEEECC
Confidence 467788888888765 46666667777777777777654332 112334455555555
Q ss_pred CCcCcccCCccccCCCccCEEEecCCCCCcc-cCccccCCCCCcEEeccCCCCCCCCh----hhhhhcccCccccc
Q 042890 183 DCKRLKSLPSSLYRLKSLGILDLHGCSNLQR-LPECLGQLSSPITCNLAKTNIERIPE----SIIQLFVSGYLLLS 253 (254)
Q Consensus 183 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~l~~----~~~~~~~L~~L~ls 253 (254)
+|.+.+.+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+..++. .+..+++|+.|+++
T Consensus 73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5554444444444455555555555554432 22445556666666666666665543 45666667666665
No 116
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2.3e-14 Score=108.44 Aligned_cols=125 Identities=24% Similarity=0.211 Sum_probs=97.5
Q ss_pred ccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccch-hhhhccccCEEeccC
Q 042890 107 LVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERQLRLSWLDLSD 183 (254)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~ 183 (254)
-++++.+++. ...+|..+ .++++.|++++|.+. .+|... +.+|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 12 ~~~l~~~~~~-l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKG-LKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCC-CCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 3678888887 45666644 357899999997754 455332 3788899999999887765 478888999999999
Q ss_pred CcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 184 CKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 184 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
|.+....+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9887777777888899999999988877666667888889999999998874
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.3e-15 Score=107.68 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCcCeEeccccccc--ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEe
Q 042890 151 GNISWLFLRGIAIE--ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCN 228 (254)
Q Consensus 151 ~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 228 (254)
.+++.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..++.+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56677777777776 6777778889999999999987665 5688999999999999988877888777899999999
Q ss_pred ccCCCCCCCC--hhhhhhcccCcccccC
Q 042890 229 LAKTNIERIP--ESIIQLFVSGYLLLSY 254 (254)
Q Consensus 229 l~~n~l~~l~--~~~~~~~~L~~L~ls~ 254 (254)
+++|.++.++ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 9999999765 7789999999999874
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=3e-17 Score=143.67 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=136.0
Q ss_pred hcccccceehhhccCCceeecCCCCccCCcccccEEeccCCc-------------CCCccCCCCCCCCcccEEe-ccCCC
Q 042890 75 KRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSK-------------SLKSLPSGIFNLEFLTKLD-LSGCS 140 (254)
Q Consensus 75 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~ 140 (254)
..++.|+.|+++++. ...+|. .++.+++|+.|++.+|. ..+..|..+..+++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~n~--L~~Lp~--~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEK--STVLQS--ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHH--HHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhh--HHhhHH--HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc
Confidence 456788888888665 567776 88888899999886653 3344555666777888877 44321
Q ss_pred CCcccc----------ccccCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCC
Q 042890 141 KLKRLP----------EISSGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 141 ~~~~~p----------~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (254)
...++ ......++.|++++|.++.+|. +..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCC
Confidence 11111 1112468999999999999997 899999999999999977 7888999999999999999888
Q ss_pred CcccCccccCCCCCcEEeccCCCCCCC--ChhhhhhcccCcccccC
Q 042890 211 LQRLPECLGQLSSPITCNLAKTNIERI--PESIIQLFVSGYLLLSY 254 (254)
Q Consensus 211 ~~~~~~~~~~l~~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~ls~ 254 (254)
.+ +| .++.+++|+.|++++|.++.+ |..+..+++|+.|++++
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 76 66 788999999999999999977 88999999999999874
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=2.3e-14 Score=108.39 Aligned_cols=126 Identities=19% Similarity=0.171 Sum_probs=107.8
Q ss_pred ccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccc--c-ccCCcCeEeccccccccc-chhhhhccccCEEecc
Q 042890 107 LVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE--I-SSGNISWLFLRGIAIEEL-PSSIERQLRLSWLDLS 182 (254)
Q Consensus 107 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~--~-~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~ 182 (254)
-+.++++++.+ +.+|..+. .+++.|++++|.+....+. + .+++|++|++++|.++.+ |..+..+++|+.|+++
T Consensus 10 ~~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 37899999884 66777554 3899999999876655443 2 258999999999999977 5678899999999999
Q ss_pred CCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCC
Q 042890 183 DCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 183 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+|.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99998888777999999999999999998888999999999999999999986
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=2.3e-14 Score=105.97 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=79.5
Q ss_pred cccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCe
Q 042890 78 SKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISW 155 (254)
Q Consensus 78 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~ 155 (254)
++|++|+++++....+.+|. .+..+++|++|++++|.+... ..+..+++|+.|++++|.+....|... .++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG--LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44555555544421124443 455566666666666654332 445566666666666665554444332 356667
Q ss_pred Eecccccccccc--hhhhhccccCEEeccCCcCcccCC---ccccCCCccCEEEecCCCCC
Q 042890 156 LFLRGIAIEELP--SSIERQLRLSWLDLSDCKRLKSLP---SSLYRLKSLGILDLHGCSNL 211 (254)
Q Consensus 156 L~l~~~~~~~l~--~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~~~~~ 211 (254)
|++++|.++.+| ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777777655 456777888888888887665443 36777888888888887553
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=5.7e-14 Score=115.07 Aligned_cols=170 Identities=14% Similarity=0.072 Sum_probs=123.3
Q ss_pred ccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCC---------------
Q 042890 77 YSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK--------------- 141 (254)
Q Consensus 77 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------------- 141 (254)
+++|+.+++.. . ...++. .+|.+|++|+.+++.+|.+...-+..|..+.++..+.......
T Consensus 100 ~~~L~~l~L~~-~--i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE-K--IKNIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT-T--CCEECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc-c--ccchhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88888888875 2 344542 3788888999999888875443345555665565555433100
Q ss_pred --Cc---------cccc------------------------------cccCCcCeEecccccccccchh-hhhccccCEE
Q 042890 142 --LK---------RLPE------------------------------ISSGNISWLFLRGIAIEELPSS-IERQLRLSWL 179 (254)
Q Consensus 142 --~~---------~~p~------------------------------~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L 179 (254)
.. .++. ....+|+.+++.+|.++.+|.. |.++++|+.+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 00 0000 0026899999999999998875 8888999999
Q ss_pred eccCCcCcccCCccccCCCccC-EEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh-hhhhhcccCcccc
Q 042890 180 DLSDCKRLKSLPSSLYRLKSLG-ILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE-SIIQLFVSGYLLL 252 (254)
Q Consensus 180 ~l~~n~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l 252 (254)
++.+| +...-..+|.++++|+ .+++.. ++...-+.+|.+|++|+.+++..|.++.++. .+..+++|+.++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99987 4554456789999999 999987 6666667899999999999999999987765 6778999998864
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=1.1e-13 Score=104.70 Aligned_cols=128 Identities=21% Similarity=0.144 Sum_probs=103.8
Q ss_pred ceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCC-CCCCCCcccEEeccCCCCCccccccc--cCCcCeEe
Q 042890 81 NQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLF 157 (254)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~ 157 (254)
+.++++++. ...+|. .+. ..+++|++++|.+....+. .+..+++|+.|++++|.+.+..|... ..+|++|+
T Consensus 11 ~~l~~s~~~--l~~ip~--~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRG--LKEIPR--DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSC--CSSCCS--CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCC--cCcCcc--CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 677777654 466665 443 3899999999986554443 37889999999999988776655443 47899999
Q ss_pred cccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCccc
Q 042890 158 LRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRL 214 (254)
Q Consensus 158 l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 214 (254)
+++|.++.++.. +..+++|++|++++|.+.+..|..+..+++|+.+++++|.+....
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 999999977654 788999999999999999888888999999999999998876543
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.54 E-value=1.4e-15 Score=133.94 Aligned_cols=104 Identities=13% Similarity=-0.022 Sum_probs=65.7
Q ss_pred CCcCeEecc----cccccc------cchhhhhccccCEEeccCCc--CcccCCccc-cCCCccCEEEecCCCCCc-ccCc
Q 042890 151 GNISWLFLR----GIAIEE------LPSSIERQLRLSWLDLSDCK--RLKSLPSSL-YRLKSLGILDLHGCSNLQ-RLPE 216 (254)
Q Consensus 151 ~~L~~L~l~----~~~~~~------l~~~~~~~~~L~~L~l~~n~--~~~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~~ 216 (254)
++|+.|++. .+.++. ++..+..+++|+.|++++|. +.+.....+ ..+++|+.|++++|.+.+ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 456666664 334443 22334556677777776543 333222223 247788888888877654 2444
Q ss_pred cccCCCCCcEEeccCCCCC--CCChhhhhhcccCcccccC
Q 042890 217 CLGQLSSPITCNLAKTNIE--RIPESIIQLFVSGYLLLSY 254 (254)
Q Consensus 217 ~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~ls~ 254 (254)
.+..+++|+.|++++|.++ .++.....+++|++|++++
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 5567889999999999876 2455566789999988864
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=1.7e-15 Score=136.41 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=72.3
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIF 126 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 126 (254)
..|+.|+|++|.+..+|.. +..+++|++|+++++. +..+|. .+..+++|++|++++|.+. .+|..+.
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~--------~~~l~~L~~L~Ls~N~--l~~lp~--~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISAN--------IFKYDFLTRLYLNGNS--LTELPA--EIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp CCCCEEECTTSCCSCCCGG--------GGGCCSCSCCBCTTSC--CSCCCG--GGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred CCCcEEECCCCCCCCCChh--------hcCCCCCCEEEeeCCc--CcccCh--hhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 5666666666666555543 4456666666666554 235554 5666666666666666644 5566566
Q ss_pred CCCcccEEeccCCCCCccccccc--cCCcCeEecccccccc-cchhhhhcc-ccCEEeccCCcCcccCCc
Q 042890 127 NLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE-LPSSIERQL-RLSWLDLSDCKRLKSLPS 192 (254)
Q Consensus 127 ~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~-l~~~~~~~~-~L~~L~l~~n~~~~~~~~ 192 (254)
.+++|++|++++|.+. .+|... +.+|+.|++++|.++. +|..+.... ....+++.+|.+.+.+|.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 6666666666665433 444432 3556666666666663 333332221 112345555555554443
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=3.6e-15 Score=131.36 Aligned_cols=158 Identities=15% Similarity=0.041 Sum_probs=74.6
Q ss_pred CCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceee
Q 042890 16 KMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAK 94 (254)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~ 94 (254)
.+++|++|++++|.+.+.+. ..++..... ++|++|++.+|.++.+... .++..+..+++|++|+++++.. ..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~~~~L~~L~L~~n~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~--~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDG--KWLHELAQHNTSLEVLNFYMTEFAKISPK---DLETIARNCRSLVSVKVGDFEI--LE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCS--HHHHHHHHHCCCCCEEECTTCCCSSCCHH---HHHHHHHHCTTCCEEECSSCBG--GG
T ss_pred hCCCCCEEECccccccCcch--hHHHHHHhcCCCccEEEeeccCCCccCHH---HHHHHHhhCCCCcEEeccCccH--HH
Confidence 56677777777766532211 001111122 6677777777665433322 2222245566666666665431 11
Q ss_pred cCC-------------------------CCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccc-c-
Q 042890 95 IPN-------------------------PTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-E- 147 (254)
Q Consensus 95 ~~~-------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p-~- 147 (254)
++. ...+..+++|+.|++.++. ...+|..+..+++|+.|++++|.+..... .
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 111 0133344445555544432 23344445556677777777766332211 1
Q ss_pred -cccCCcCeEeccccccc--ccchhhhhccccCEEecc
Q 042890 148 -ISSGNISWLFLRGIAIE--ELPSSIERQLRLSWLDLS 182 (254)
Q Consensus 148 -~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~ 182 (254)
...++|+.|++. +.+. .++.....+++|++|+++
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 112556666655 2222 233334455566666666
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4e-14 Score=105.52 Aligned_cols=132 Identities=16% Similarity=0.092 Sum_probs=101.9
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCCC-cccEEeccCCCCCccccccc-cCCcCeEecccccccccchh-hhhcccc
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSS-IERQLRL 176 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~~-~~~L~~L~l~~~~~~~l~~~-~~~~~~L 176 (254)
.+..+++|+.|++++|.+. .++. +..+. +|+.|++++|.+.+. +... .++|++|++++|.++.+|.. +..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 5667889999999999865 4554 55554 999999999876654 3332 47899999999999988765 4888999
Q ss_pred CEEeccCCcCcccCCc--cccCCCccCEEEecCCCCCcccCc----cccCCCCCcEEeccCCCCCC
Q 042890 177 SWLDLSDCKRLKSLPS--SLYRLKSLGILDLHGCSNLQRLPE----CLGQLSSPITCNLAKTNIER 236 (254)
Q Consensus 177 ~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~ 236 (254)
+.|++++|.+. .++. .+..+++|+.+++++|.+.. .|. .+..+++|+.|++.+|...+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999874 3444 67888999999999987753 454 37788999999999888643
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=8.2e-14 Score=103.79 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=96.1
Q ss_pred hhcccccceehhhccCCceeecCCCCccCCcc-cccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc---c
Q 042890 74 VKRYSKLNQIIHAACHKLIAKIPNPTLMPRMK-KLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---S 149 (254)
Q Consensus 74 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~---~ 149 (254)
+..+++|++|+++++. ...++ .+..+. +|+.|++++|.+.+ + ..+..+++|+.|++++|.+.. +|+. .
T Consensus 15 ~~~~~~L~~L~l~~n~--l~~i~---~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK--IPVIE---NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSC--CCSCC---CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHHHH
T ss_pred cCCcCCceEEEeeCCC--CchhH---HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc-cCcchhhc
Confidence 4567788899988775 34554 344444 89999999988654 3 457888899999999977654 3432 2
Q ss_pred cCCcCeEecccccccccch--hhhhccccCEEeccCCcCcccCCcc----ccCCCccCEEEecCCCCC
Q 042890 150 SGNISWLFLRGIAIEELPS--SIERQLRLSWLDLSDCKRLKSLPSS----LYRLKSLGILDLHGCSNL 211 (254)
Q Consensus 150 ~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 211 (254)
.++|++|++++|.++.+|. .+..+++|+.|++++|.+.. ++.. +..+++|+.+++++|...
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 4788899999998888876 67788889999999988654 4443 778888999998887654
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=2.6e-14 Score=128.71 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=107.4
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhc
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAA 87 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~ 87 (254)
+.+..|..++.|++|++++|.+ ..++..+.. ++|++|+|++|.++.+|.. +..+++|++|++++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l-------~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~--------~~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQI-------FNISANIFKYDFLTRLYLNGNSLTELPAE--------IKNLSNLRVLDLSH 279 (727)
T ss_dssp -------CCCCCCEEECTTSCC-------SCCCGGGGGCCSCSCCBCTTSCCSCCCGG--------GGGGTTCCEEECTT
T ss_pred cChhhhccCCCCcEEECCCCCC-------CCCChhhcCCCCCCEEEeeCCcCcccChh--------hhCCCCCCEEeCcC
Confidence 4466789999999999999998 345555555 9999999999998888765 88999999999998
Q ss_pred cCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccccc---CCcCeEeccccccc
Q 042890 88 CHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS---GNISWLFLRGIAIE 164 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~---~~L~~L~l~~~~~~ 164 (254)
+. +..+|. .+..+++|++|++++|.+ +.+|..+..+++|+.|++++|.+.+..|.... .....+++.+|.++
T Consensus 280 N~--l~~lp~--~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 280 NR--LTSLPA--ELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp SC--CSSCCS--SGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred Cc--CCccCh--hhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 77 447887 899999999999999985 57888899999999999999988776665431 11224567777766
Q ss_pred -ccchhhhhccccCEEeccCC
Q 042890 165 -ELPSSIERQLRLSWLDLSDC 184 (254)
Q Consensus 165 -~l~~~~~~~~~L~~L~l~~n 184 (254)
.+|. .+..|+++.|
T Consensus 355 ~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 355 IPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCCC------C---------
T ss_pred CcCcc------ccceeEeecc
Confidence 3442 4555666655
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=7.3e-13 Score=98.66 Aligned_cols=128 Identities=18% Similarity=0.130 Sum_probs=103.2
Q ss_pred cccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc--ccCCcCeEecccccccccchh-hhhccccCEEecc
Q 042890 106 KLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSS-IERQLRLSWLDLS 182 (254)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~ 182 (254)
..+.++++++.+ ..+|..+ .++|+.|++++|.+....+.. ..++|++|++++|.++.++.. +..+++|+.|+++
T Consensus 8 ~~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467888888874 4556543 468999999998765433322 247899999999999988765 6789999999999
Q ss_pred CCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCC
Q 042890 183 DCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIER 236 (254)
Q Consensus 183 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 236 (254)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 999887666667899999999999998876666667889999999999999863
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=3.4e-14 Score=125.12 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=30.9
Q ss_pred CCCcceEEEeeccccCCCccCcccccCCCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhcc
Q 042890 16 KMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAAC 88 (254)
Q Consensus 16 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~ 88 (254)
.+++|++|++++|.+++... ..+...... ++|++|++.+|. ..++...++.+ ...+++|++|++++|
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l---~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSG--HWLSHFPDTYTSLVSLNISCLA-SEVSFSALERL---VTRCPNLKSLKLNRA 221 (594)
T ss_dssp HCTTCCEEECTTCEEECCCG--GGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHH---HHHCTTCCEEECCTT
T ss_pred hCCCCCEEeCcCCccCCcch--HHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHH---HHhCCCCcEEecCCC
Confidence 45555555555555433221 112222223 566666666664 22322222222 334566666666655
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=1.9e-12 Score=97.80 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=97.1
Q ss_pred ceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEec
Q 042890 81 NQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFL 158 (254)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l 158 (254)
+.++++++. ...+|. .+ .+.+++|++++|.+ ..+|..+..+++|+.|++++|.+....+... +.+|+.|++
T Consensus 13 ~~l~~~~~~--l~~ip~--~~--~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKG--LKVLPK--GI--PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSC--CSSCCS--CC--CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC--CCcCCC--CC--CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 456666544 456664 43 36899999999985 4677778899999999999987665444322 478999999
Q ss_pred ccccccccch-hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCC
Q 042890 159 RGIAIEELPS-SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNL 211 (254)
Q Consensus 159 ~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~ 211 (254)
++|.++.++. .+..+++|+.|++++|.+....+..+..+++|+.+++++|.+.
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999998776 4888899999999999987666566888999999999988764
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=4.6e-15 Score=130.66 Aligned_cols=197 Identities=13% Similarity=-0.009 Sum_probs=86.8
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCC---------cC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGS---------KS 117 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------~~ 117 (254)
++|++|++++|.++ +..+. ..+..+++|++|+++++. ....++. ....+++|++|++.++ .+
T Consensus 289 ~~L~~L~L~~~~l~---~~~l~---~~~~~~~~L~~L~l~~~~-~~~~l~~--l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 289 SRLTTLNLSYATVQ---SYDLV---KLLCQCPKLQRLWVLDYI-EDAGLEV--LASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp TTCCEEECTTCCCC---HHHHH---HHHTTCTTCCEEEEEGGG-HHHHHHH--HHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred CCCCEEEccCCCCC---HHHHH---HHHhcCCCcCEEeCcCcc-CHHHHHH--HHHhCCCCCEEEEecCcccccccCCCC
Confidence 78888888888632 22111 124466777777777551 1111221 2223566666666331 11
Q ss_pred CCccCCCC-CCCCcccEEeccCCCCCcccccc---ccCCcCeEecc--c----cccccc------chhhhhccccCEEec
Q 042890 118 LKSLPSGI-FNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLFLR--G----IAIEEL------PSSIERQLRLSWLDL 181 (254)
Q Consensus 118 ~~~~~~~~-~~l~~L~~L~l~~~~~~~~~p~~---~~~~L~~L~l~--~----~~~~~l------~~~~~~~~~L~~L~l 181 (254)
.......+ ..+++|+.|+++++.+....... ..++|+.|++. + +.++.. +..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 11000011 12455555555444333221111 12455555555 2 233322 122344455555655
Q ss_pred cCCcCcccCCccccC-CCccCEEEecCCCCCcccCccc-cCCCCCcEEeccCCCCCC--CChhhhhhcccCccccc
Q 042890 182 SDCKRLKSLPSSLYR-LKSLGILDLHGCSNLQRLPECL-GQLSSPITCNLAKTNIER--IPESIIQLFVSGYLLLS 253 (254)
Q Consensus 182 ~~n~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~ls 253 (254)
++ .+.+.....+.. +++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.. +...+..+++|++|+++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 44 333322222322 4555555555555433222222 335555555555555531 11223345555555554
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.43 E-value=3.6e-12 Score=94.86 Aligned_cols=129 Identities=19% Similarity=0.127 Sum_probs=99.0
Q ss_pred cceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc--ccCCcCeEe
Q 042890 80 LNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLF 157 (254)
Q Consensus 80 L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~~L~~L~ 157 (254)
.+.++++++. ...+|. .+ .+.|++|++++|.+.+..+..+..+++|+.|++++|.+....+.. ...+|+.|+
T Consensus 9 ~~~l~~~~~~--l~~~p~--~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKG--LTSVPT--GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSC--CSSCCT--TC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCC--CccCCC--CC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 4566666443 445553 33 479999999999976555556788999999999998765443332 247999999
Q ss_pred cccccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCccc
Q 042890 158 LRGIAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRL 214 (254)
Q Consensus 158 l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 214 (254)
+++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|+.+++++|.+....
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999999988775 678899999999999987655555788999999999998876543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.4e-15 Score=115.58 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=101.4
Q ss_pred hhcccccceehhhccCC-----ceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCcccccc
Q 042890 74 VKRYSKLNQIIHAACHK-----LIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI 148 (254)
Q Consensus 74 ~~~~~~L~~l~l~~~~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~ 148 (254)
+.....++.++++.+.- ....++. .+..+++|++|++++|.+.. +| .+..+++|+.|++++|.+. .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~--~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHH--HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhH--HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccch
Confidence 44455666666553332 1233333 56678888888888887544 56 5777888888888887654 45543
Q ss_pred c--cCCcCeEecccccccccchhhhhccccCEEeccCCcCcccCC-ccccCCCccCEEEecCCCCCcccCc---------
Q 042890 149 S--SGNISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLP-SSLYRLKSLGILDLHGCSNLQRLPE--------- 216 (254)
Q Consensus 149 ~--~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~--------- 216 (254)
. .++|++|++++|.++.+| .+..+++|+.|++++|.+.+..+ ..+..+++|+.+++++|.+.+..|.
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 3 267888888888888776 56777888888888887654221 3567788888888888766554433
Q ss_pred -cccCCCCCcEEeccCCCCC
Q 042890 217 -CLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 217 -~~~~l~~L~~L~l~~n~l~ 235 (254)
.+..+++|+.|+ ++.+.
T Consensus 168 ~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 168 EVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHCSSCSEEC--CGGGT
T ss_pred HHHHhCCCcEEEC--CcccC
Confidence 256677788776 44443
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=3.2e-12 Score=94.58 Aligned_cols=105 Identities=22% Similarity=0.174 Sum_probs=89.9
Q ss_pred cccEEeccCCCCCccccccccCCcCeEecccccccccc-hhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCC
Q 042890 130 FLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELP-SSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGC 208 (254)
Q Consensus 130 ~L~~L~l~~~~~~~~~p~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 208 (254)
..+.++++++. ...+|......++.|++++|.++.++ ..+..+++|++|++++|.+.+..+..+.++++|+.|++++|
T Consensus 10 ~~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 35789999966 44567666689999999999999884 55889999999999999988766666789999999999999
Q ss_pred CCCcccCccccCCCCCcEEeccCCCCC
Q 042890 209 SNLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 209 ~~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
.+.+..+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888777777899999999999999986
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=1.2e-11 Score=91.56 Aligned_cols=105 Identities=21% Similarity=0.154 Sum_probs=86.6
Q ss_pred cccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc--cCCcCeEecccccccccchh-hhhccccCEEecc
Q 042890 106 KLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERQLRLSWLDLS 182 (254)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~ 182 (254)
..+++++++|.+ ..+|..+ .++++.|++++|.+.+..|... +.+|++|++++|.++.+|.. +..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 568899999984 5577655 3789999999988776655433 48999999999999998876 5789999999999
Q ss_pred CCcCcccCCccccCCCccCEEEecCCCCCcc
Q 042890 183 DCKRLKSLPSSLYRLKSLGILDLHGCSNLQR 213 (254)
Q Consensus 183 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 213 (254)
+|.+.+..+..+..+++|+.|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9998876666789999999999999876543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=1.4e-11 Score=91.49 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCcCeEeccccccccc-chhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEec
Q 042890 151 GNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNL 229 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 229 (254)
..++.|++++|.++.+ |..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 3444444444444444 223455555666666665544433333455566666666655554443444555666666666
Q ss_pred cCCCCC
Q 042890 230 AKTNIE 235 (254)
Q Consensus 230 ~~n~l~ 235 (254)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=4.4e-12 Score=94.23 Aligned_cols=100 Identities=16% Similarity=0.146 Sum_probs=87.0
Q ss_pred cCeEecccccccccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCC
Q 042890 153 ISWLFLRGIAIEELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKT 232 (254)
Q Consensus 153 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 232 (254)
-+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3577888888888887654 78999999999988887888999999999999999887766667789999999999999
Q ss_pred CCCCCChh-hhhhcccCcccccC
Q 042890 233 NIERIPES-IIQLFVSGYLLLSY 254 (254)
Q Consensus 233 ~l~~l~~~-~~~~~~L~~L~ls~ 254 (254)
.++.+|.. +..+++|+.|++++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCS
T ss_pred ccceeCHHHhccccCCCEEEeCC
Confidence 99988765 88899999999874
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=1.5e-14 Score=109.84 Aligned_cols=125 Identities=19% Similarity=0.145 Sum_probs=66.3
Q ss_pred hhhcccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc-cC
Q 042890 73 RVKRYSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SG 151 (254)
Q Consensus 73 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~ 151 (254)
.+..+++|++|+++++. ...++ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+ +|... .+
T Consensus 43 ~~~~l~~L~~L~ls~n~--l~~l~---~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN--IEKIS---SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEE--ESCCC---CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHH
T ss_pred HHhcCCCCCEEECCCCC--Ccccc---ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCC
Confidence 35556666666666543 23333 4555666666666666533 444444445566666666654433 23211 25
Q ss_pred CcCeEecccccccccch--hhhhccccCEEeccCCcCcccCCc----------cccCCCccCEEE
Q 042890 152 NISWLFLRGIAIEELPS--SIERQLRLSWLDLSDCKRLKSLPS----------SLYRLKSLGILD 204 (254)
Q Consensus 152 ~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~n~~~~~~~~----------~l~~l~~L~~L~ 204 (254)
+|+.|++++|.++.++. .+..+++|+.|++++|.+.+.+|. .+..+++|+.+|
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 56666666666665443 355556666666666655443322 144556666655
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.27 E-value=2e-10 Score=96.42 Aligned_cols=145 Identities=8% Similarity=0.045 Sum_probs=77.9
Q ss_pred ccCCcccccEEeccCCcCCCccC-CCCCCCCcccEEeccCCCCCccccccc---cCCcCeEeccccccc-----ccch-h
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIE-----ELPS-S 169 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~-----~l~~-~ 169 (254)
.|.++++|+.+++..+ ...++ ..|.+ .+|+.+.+.+ . ...++... ..+|+.+.+.++.+. .++. .
T Consensus 221 aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-G-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp TTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-T-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred HhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-C-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 4555555555555543 12222 22333 4555555533 2 12222222 256667766665543 3433 3
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCCh-hhhhhc-cc
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIPE-SIIQLF-VS 247 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~-~L 247 (254)
|.++++|+.+++.. .+...-..+|.++++|+.+.+.. ++...-..+|.++ +|+.+.+.+|.+..++. .+..++ ++
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 66667777777763 33333344577777777777754 3545555677777 78888888777665433 233443 45
Q ss_pred Ccccc
Q 042890 248 GYLLL 252 (254)
Q Consensus 248 ~~L~l 252 (254)
..+++
T Consensus 373 ~~l~v 377 (401)
T 4fdw_A 373 TVIRV 377 (401)
T ss_dssp CEEEE
T ss_pred cEEEe
Confidence 55443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.17 E-value=3.9e-10 Score=92.18 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=77.6
Q ss_pred CCcccEEeccCCCCCcccccccc---CCcCeEecccccccccchh-hhhccccC-EEeccCCcCcccCCccccCCCccCE
Q 042890 128 LEFLTKLDLSGCSKLKRLPEISS---GNISWLFLRGIAIEELPSS-IERQLRLS-WLDLSDCKRLKSLPSSLYRLKSLGI 202 (254)
Q Consensus 128 l~~L~~L~l~~~~~~~~~p~~~~---~~L~~L~l~~~~~~~l~~~-~~~~~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~ 202 (254)
+++|+.+++.+|. ...+|...+ .+|+.+.+.+| ++.++.. |.++++|+ .+++.+ .+...-+.+|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 6788888888865 344554432 57888888887 7777654 78889999 999988 555555578999999999
Q ss_pred EEecCCCCCcccCccccCCCCCcEEec
Q 042890 203 LDLHGCSNLQRLPECLGQLSSPITCNL 229 (254)
Q Consensus 203 L~l~~~~~~~~~~~~~~~l~~L~~L~l 229 (254)
+++.++++...-+.+|.++++|+.+..
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 999888887777889999999998864
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.13 E-value=2.7e-09 Score=89.55 Aligned_cols=202 Identities=10% Similarity=0.083 Sum_probs=134.4
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccCCCC-CCceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhc
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPG-FAEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAA 87 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~ 87 (254)
+...+|..|++|+.+++..+.+ ..++...- ..+|+.+.+.++ ++.++.. ++..+++|+.+.+..
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l-------~~I~~~aF~~~~L~~l~lp~~-l~~I~~~-------aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKI-------TKLPASTFVYAGIEEVLLPVT-LKEIGSQ-------AFLKTSQLKTIEIPE 235 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCC-------SEECTTTTTTCCCSEEECCTT-CCEECTT-------TTTTCTTCCCEECCT
T ss_pred ehHHHhhCcccCCeeecCCCcc-------eEechhhEeecccCEEEeCCc-hheehhh-------HhhCCCCCCEEecCC
Confidence 3445666666666666666554 22222222 256666666543 4444433 477888999998874
Q ss_pred cCCceeecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCC----ccccccc---cCCcCeEeccc
Q 042890 88 CHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKL----KRLPEIS---SGNISWLFLRG 160 (254)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~p~~~---~~~L~~L~l~~ 160 (254)
. ...+.. .+|.+ ..|+.+.+..+ +...-...|.++++|+.+++.++... ..++... ..+|+.+.+.
T Consensus 236 ~---l~~I~~-~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 236 N---VSTIGQ-EAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp T---CCEECT-TTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred C---ccCccc-ccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 3 344442 26666 78999999654 23333566888999999999886543 1233333 2688999988
Q ss_pred ccccccchh-hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCC-CCcEEeccCCCC
Q 042890 161 IAIEELPSS-IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLS-SPITCNLAKTNI 234 (254)
Q Consensus 161 ~~~~~l~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~l 234 (254)
+.++.++.. |.++++|+.+.+..+ +...-..+|.++ +|+.+++.+|.........|..++ .++.+.+..+.+
T Consensus 309 ~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 309 ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 457777654 778899999999654 444445678889 999999999877666667777774 788888877664
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=5.1e-12 Score=105.05 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=73.0
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhc-ccccceehhhccCCceeecCCCCccCCcccccEEeccCCcCCCccCCCC
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKR-YSKLNQIIHAACHKLIAKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGI 125 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 125 (254)
+.|+.|++++|.++. .....+...+.. .++|++|++++|.-....... ....+++|+.|++++|.+...-...+
T Consensus 72 ~~L~~L~Ls~n~l~~---~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTP---VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT--LLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCH---HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH--THHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred hhCCEEEecCCCCCH---HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH--HHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 556677777765432 122222222322 246666666655421111111 22234566666666665432111111
Q ss_pred -----CCCCcccEEeccCCCCCcc----cccc--ccCCcCeEecccccccc-----cchhhhhccccCEEeccCCcCccc
Q 042890 126 -----FNLEFLTKLDLSGCSKLKR----LPEI--SSGNISWLFLRGIAIEE-----LPSSIERQLRLSWLDLSDCKRLKS 189 (254)
Q Consensus 126 -----~~l~~L~~L~l~~~~~~~~----~p~~--~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~n~~~~~ 189 (254)
...++|+.|++++|.+... ++.. ..++|++|++++|.++. ++..+...++|+.|++++|.+.+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 1234566666666553321 1110 12455556666555541 233344455566666666655431
Q ss_pred ----CCccccCCCccCEEEecCCCCC
Q 042890 190 ----LPSSLYRLKSLGILDLHGCSNL 211 (254)
Q Consensus 190 ----~~~~l~~l~~L~~L~l~~~~~~ 211 (254)
+...+...++|+.|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 2223334455666666665544
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2e-10 Score=94.50 Aligned_cols=102 Identities=15% Similarity=0.076 Sum_probs=82.8
Q ss_pred EEeccCCCCCccccccc-cCCcCeEeccc-ccccccch-hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCC
Q 042890 133 KLDLSGCSKLKRLPEIS-SGNISWLFLRG-IAIEELPS-SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCS 209 (254)
Q Consensus 133 ~L~l~~~~~~~~~p~~~-~~~L~~L~l~~-~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 209 (254)
.++.++++....+|... ..+|+.|++++ |.++.++. .+..+++|+.|++++|.+.+..+..|.++++|+.|++++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 45777753455677622 36799999996 99998875 58889999999999999888888889999999999999988
Q ss_pred CCcccCccccCCCCCcEEeccCCCCC
Q 042890 210 NLQRLPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 210 ~~~~~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+.+..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8766666666555 999999999986
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=7.9e-12 Score=103.92 Aligned_cols=157 Identities=16% Similarity=0.027 Sum_probs=107.4
Q ss_pred ccccceehhhccCCcee---ecCCCCccC-CcccccEEeccCCcCCCccCCCC-CCCCcccEEeccCCCCCcccccc---
Q 042890 77 YSKLNQIIHAACHKLIA---KIPNPTLMP-RMKKLVILNLRGSKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRLPEI--- 148 (254)
Q Consensus 77 ~~~L~~l~l~~~~~~~~---~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~p~~--- 148 (254)
.+.|+.+++++|..... .+.. .+. ..+.|++|++++|.+...-...+ ..+++|+.|++++|.+.......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~--~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAA--VLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHH--HHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHH--HHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 46788999987763211 1111 222 23689999999998643222222 24568999999998765432111
Q ss_pred ----ccCCcCeEecccccccc-----cchhhhhccccCEEeccCCcCccc----CCccccCCCccCEEEecCCCCCcc--
Q 042890 149 ----SSGNISWLFLRGIAIEE-----LPSSIERQLRLSWLDLSDCKRLKS----LPSSLYRLKSLGILDLHGCSNLQR-- 213 (254)
Q Consensus 149 ----~~~~L~~L~l~~~~~~~-----l~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~-- 213 (254)
..+.|+.|++++|.++. ++..+...++|++|++++|.+.+. +...+...++|+.|++++|.+.+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 12679999999998873 455567788899999999987652 344566778899999999887643
Q ss_pred --cCccccCCCCCcEEeccCCCCC
Q 042890 214 --LPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 214 --~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+...+...+.|+.|++++|.+.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHhCCCCCEEeccCCCCC
Confidence 3444556788999999999986
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.91 E-value=6.4e-09 Score=85.46 Aligned_cols=102 Identities=21% Similarity=0.036 Sum_probs=79.2
Q ss_pred cEEeccCC-cCCCccCCCCCCCCcccEEeccC-CCCCccccccc--cCCcCeEecccccccccch-hhhhccccCEEecc
Q 042890 108 VILNLRGS-KSLKSLPSGIFNLEFLTKLDLSG-CSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERQLRLSWLDLS 182 (254)
Q Consensus 108 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~p~~~--~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~ 182 (254)
..++.+++ . ...+|. +..+++|+.|++++ |.+....+... +.+|+.|++++|.++.+++ .+..+++|+.|+++
T Consensus 11 ~~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34577776 5 456888 98999999999996 66544433322 4899999999999998765 57899999999999
Q ss_pred CCcCcccCCccccCCCccCEEEecCCCCCc
Q 042890 183 DCKRLKSLPSSLYRLKSLGILDLHGCSNLQ 212 (254)
Q Consensus 183 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 212 (254)
+|.+.+..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9998765555555555 9999999987753
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.5e-07 Score=78.74 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=113.4
Q ss_pred eCCcccCCCCcceEEEeeccccCCCccCcccccC-CCCC-CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhh
Q 042890 9 LNPNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQ-DPGF-AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHA 86 (254)
Q Consensus 9 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~-~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~ 86 (254)
+...+|..+++|+.+.+..+.. .+.. .+.. .+|+.+.+..+ ++.+++. ++..+..|+.+.+.
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~~--------~I~~~~F~~c~~L~~i~l~~~-~~~I~~~-------~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSME--------TLHNGLFSGCGKLKSIKLPRN-LKIIRDY-------CFAECILLENMEFP 216 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCC--------EECTTTTTTCTTCCBCCCCTT-CCEECTT-------TTTTCTTCCBCCCC
T ss_pred cchhhhcccCCCcEEecCCccc--------eeccccccCCCCceEEEcCCC-ceEeCch-------hhccccccceeecC
Confidence 4456788888888888765431 1222 2333 66777777654 3333332 23444555554443
Q ss_pred ccCCce-------------------eecCCCCccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccc
Q 042890 87 ACHKLI-------------------AKIPNPTLMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE 147 (254)
Q Consensus 87 ~~~~~~-------------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~ 147 (254)
...... ..+.. ..+..+..++.+.+..+. ...-...+..+..++.+....... ....-
T Consensus 217 ~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~-~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i-~~~~F 293 (394)
T 4fs7_A 217 NSLYYLGDFALSKTGVKNIIIPDSFTELGK-SVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIV-PEKTF 293 (394)
T ss_dssp TTCCEECTTTTTTCCCCEEEECTTCCEECS-STTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEE-CTTTT
T ss_pred CCceEeehhhcccCCCceEEECCCceeccc-ccccccccceeEEcCCCc-ceeeccccccccccceeccCceee-ccccc
Confidence 211111 11110 133444555555554432 111122344444555544433211 11111
Q ss_pred cccCCcCeEecccccccccch-hhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcE
Q 042890 148 ISSGNISWLFLRGIAIEELPS-SIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPIT 226 (254)
Q Consensus 148 ~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 226 (254)
....+|+.+.+..+ ++.+.. .+.++++|+.+++..+ +...-..+|.++.+|+.+.+..+ +...-..+|.+|.+|+.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 11256666666543 455543 3667778888887643 33333456778888888888653 54445567888888888
Q ss_pred EeccCCCCCCCChhhhhhcccCcc
Q 042890 227 CNLAKTNIERIPESIIQLFVSGYL 250 (254)
Q Consensus 227 L~l~~n~l~~l~~~~~~~~~L~~L 250 (254)
+.+..+ ++.+...+..+++|+.+
T Consensus 371 i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 371 VELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred EEECCC-CEEhhheecCCCCCcEE
Confidence 887643 34444456677777654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.3e-08 Score=84.06 Aligned_cols=184 Identities=13% Similarity=0.170 Sum_probs=108.5
Q ss_pred CceeeeeeCCCCCCC-CCCcchhhcchhhhcccccceehhhccCCc---e-----eecCCCCccCCcccccEEeccCCcC
Q 042890 47 AEVKYLHWHGYPLKS-LPSNDIEQLWDRVKRYSKLNQIIHAACHKL---I-----AKIPNPTLMPRMKKLVILNLRGSKS 117 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~-l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~---~-----~~~~~~~~~~~~~~L~~L~l~~~~~ 117 (254)
..++.|.+..+.+.. -....++.+..+...+++|+.|.+.+.... . ..+.. .+..+++|+.|++++|..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~--ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH--HHHTCTTCCEEEEECCBT
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHH--HHhcCCCCcEEEEeCCCC
Confidence 456677777553220 000123444455667889999877643110 0 11222 445678999999988742
Q ss_pred CCccCCCCCCCCcccEEeccCCCCCccc----cccccCCcCeEeccc--cc------ccccchhh--hhccccCEEeccC
Q 042890 118 LKSLPSGIFNLEFLTKLDLSGCSKLKRL----PEISSGNISWLFLRG--IA------IEELPSSI--ERQLRLSWLDLSD 183 (254)
Q Consensus 118 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~----p~~~~~~L~~L~l~~--~~------~~~l~~~~--~~~~~L~~L~l~~ 183 (254)
. .++. + .+++|+.|++..|.+.... ....+++|+.|++.. +. +..+...+ ..+++|++|++.+
T Consensus 185 l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 185 L-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp C-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred c-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 2 2333 3 3788999999877644321 111236888887742 11 22222222 2467899999988
Q ss_pred CcCcccCCccc---cCCCccCEEEecCCCCCcc----cCccccCCCCCcEEeccCCCCC
Q 042890 184 CKRLKSLPSSL---YRLKSLGILDLHGCSNLQR----LPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 184 n~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
|.+.+.....+ ..+++|+.|+++.|.+.+. ++..+.++++|+.|+++.|.+.
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 88765332222 2467899999988776543 3333345788999999888875
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.62 E-value=2.8e-08 Score=82.09 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=121.0
Q ss_pred cceEEEeeccccCCCcc--CcccccCCCCC-CceeeeeeCCCCCCCCCCc--chhhcchhhhcccccceehhhccCCcee
Q 042890 19 KLRFLKFYSSLFNGENK--CKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN--DIEQLWDRVKRYSKLNQIIHAACHKLIA 93 (254)
Q Consensus 19 ~L~~L~l~~~~~~~~~~--~~~~~~~~l~~-~~L~~L~l~~~~~~~l~~~--~l~~l~~~~~~~~~L~~l~l~~~~~~~~ 93 (254)
.++.|.+..+...+... ....+.+.+.. ++|+.|.+.+...+..... +...+...+..+|+|+.|.++++.. .
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l 185 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--L 185 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--C
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--c
Confidence 46677776554321100 00112222334 7899998876533211100 0012223467889999999987642 2
Q ss_pred ecCCCCccCCcccccEEeccCCcCCCccCCCC--CCCCcccEEeccCC--CCCc-----c----ccccccCCcCeEeccc
Q 042890 94 KIPNPTLMPRMKKLVILNLRGSKSLKSLPSGI--FNLEFLTKLDLSGC--SKLK-----R----LPEISSGNISWLFLRG 160 (254)
Q Consensus 94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~--~~~~-----~----~p~~~~~~L~~L~l~~ 160 (254)
.++ .+ .+++|++|++..|.+.......+ ..+++|+.|+++.+ ...+ . +....+++|+.|.+.+
T Consensus 186 ~l~---~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 SIG---KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp BCC---SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred eec---cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 333 33 37899999999887543222223 26889999988531 1111 1 1112247999999999
Q ss_pred ccccc-cchhh---hhccccCEEeccCCcCccc----CCccccCCCccCEEEecCCCCCcccCccccC-CCCCcEEeccC
Q 042890 161 IAIEE-LPSSI---ERQLRLSWLDLSDCKRLKS----LPSSLYRLKSLGILDLHGCSNLQRLPECLGQ-LSSPITCNLAK 231 (254)
Q Consensus 161 ~~~~~-l~~~~---~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~ 231 (254)
|.++. .+..+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+.+.....+.. + ...++++.
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCS
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecC
Confidence 88772 22222 2478999999999987663 3333456789999999998776543333332 2 34577776
Q ss_pred CC
Q 042890 232 TN 233 (254)
Q Consensus 232 n~ 233 (254)
+.
T Consensus 340 ~~ 341 (362)
T 2ra8_A 340 SQ 341 (362)
T ss_dssp BC
T ss_pred Cc
Confidence 65
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=6.5e-06 Score=68.72 Aligned_cols=80 Identities=14% Similarity=-0.044 Sum_probs=50.4
Q ss_pred hhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCC-hhhhhhcccCc
Q 042890 171 ERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIP-ESIIQLFVSGY 249 (254)
Q Consensus 171 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~ 249 (254)
..+.+|+.+.+..+ +...-..+|.++.+|+.+++.. .+...-..+|.+|.+|+.+.+..+ ++.+. .++..|++|++
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 34455555555432 2222234567778888888864 344444567888888888888765 66553 45777888888
Q ss_pred cccc
Q 042890 250 LLLS 253 (254)
Q Consensus 250 L~ls 253 (254)
+++.
T Consensus 371 i~lp 374 (394)
T 4fs7_A 371 VELP 374 (394)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7663
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=8.3e-08 Score=71.69 Aligned_cols=112 Identities=14% Similarity=0.025 Sum_probs=81.1
Q ss_pred CCCCCCcccEEeccCC-CCCcc----cccc--ccCCcCeEeccccccc-----ccchhhhhccccCEEeccCCcCccc--
Q 042890 124 GIFNLEFLTKLDLSGC-SKLKR----LPEI--SSGNISWLFLRGIAIE-----ELPSSIERQLRLSWLDLSDCKRLKS-- 189 (254)
Q Consensus 124 ~~~~l~~L~~L~l~~~-~~~~~----~p~~--~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~~-- 189 (254)
.+...+.|+.|++++| .+... +... ..+.|++|++++|.++ .+...+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3556788999999998 54432 1111 1267899999999887 2455566778899999999987763
Q ss_pred --CCccccCCCccCEEEe--cCCCCCcc----cCccccCCCCCcEEeccCCCCC
Q 042890 190 --LPSSLYRLKSLGILDL--HGCSNLQR----LPECLGQLSSPITCNLAKTNIE 235 (254)
Q Consensus 190 --~~~~l~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 235 (254)
+...+...++|+.|++ ++|.+... +...+...+.|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4456677788999999 77777543 3444556688999999999875
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.44 E-value=2.2e-05 Score=65.50 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=46.6
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCC-hhhhhhcccC
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIP-ESIIQLFVSG 248 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~ 248 (254)
+.++++|+.+.+.. .+...-..+|.++.+|+.+.+.. .+...-..+|.+|.+|+.+.+..+ ++.+. .++..|++|+
T Consensus 284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred cccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 34445555555542 22222223566777777777764 344444556777777777777543 55553 3466677777
Q ss_pred ccccc
Q 042890 249 YLLLS 253 (254)
Q Consensus 249 ~L~ls 253 (254)
.+++.
T Consensus 361 ~i~~~ 365 (394)
T 4gt6_A 361 NIEYS 365 (394)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 77654
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.41 E-value=6.2e-08 Score=72.36 Aligned_cols=111 Identities=13% Similarity=0.092 Sum_probs=68.6
Q ss_pred cCCcccccEEeccCC-cCCC----ccCCCCCCCCcccEEeccCCCCCccc----ccc--ccCCcCeEeccccccc-----
Q 042890 101 MPRMKKLVILNLRGS-KSLK----SLPSGIFNLEFLTKLDLSGCSKLKRL----PEI--SSGNISWLFLRGIAIE----- 164 (254)
Q Consensus 101 ~~~~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~----p~~--~~~~L~~L~l~~~~~~----- 164 (254)
+...+.|++|++++| .+.. .+...+...++|++|++++|.+...- ... ..+.|++|++++|.++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334556666666665 4321 12233344556666666666543321 111 0156777777777776
Q ss_pred ccchhhhhccccCEEec--cCCcCccc----CCccccCCCccCEEEecCCCCC
Q 042890 165 ELPSSIERQLRLSWLDL--SDCKRLKS----LPSSLYRLKSLGILDLHGCSNL 211 (254)
Q Consensus 165 ~l~~~~~~~~~L~~L~l--~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 211 (254)
.+...+...++|++|++ ++|.+.+. +...+...++|+.|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 25556777789999999 88887663 3345666789999999998653
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=4.6e-07 Score=66.55 Aligned_cols=89 Identities=11% Similarity=0.135 Sum_probs=55.1
Q ss_pred CceeeeeeCCCCCCCCCCcchhhcchhhhcccccceehhhccCCceeecCCCCccCC----cccccEEeccCCcCCCc-c
Q 042890 47 AEVKYLHWHGYPLKSLPSNDIEQLWDRVKRYSKLNQIIHAACHKLIAKIPNPTLMPR----MKKLVILNLRGSKSLKS-L 121 (254)
Q Consensus 47 ~~L~~L~l~~~~~~~l~~~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~-~ 121 (254)
..|+.|++++|. +.+.+++. +..+++|++|++++|....+.--. .++. +++|++|++++|.-+.. -
T Consensus 61 ~~L~~LDLs~~~---Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~--~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC---IMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLE--RLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC---CCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHH--HHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC---ccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHH--HHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 678888888875 33433333 356778888888887755443222 3433 24688888888763322 1
Q ss_pred CCCCCCCCcccEEeccCCCCCcc
Q 042890 122 PSGIFNLEFLTKLDLSGCSKLKR 144 (254)
Q Consensus 122 ~~~~~~l~~L~~L~l~~~~~~~~ 144 (254)
-..+..+++|+.|++++|...+.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 12355678888888888765543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=2.2e-06 Score=67.51 Aligned_cols=80 Identities=18% Similarity=0.072 Sum_probs=58.9
Q ss_pred hhccccCEEeccCCcCcc--cCCccccCCCccCEEEecCCCCCcc-cCccccCCCCCcEEeccCCCCC-CCCh-------
Q 042890 171 ERQLRLSWLDLSDCKRLK--SLPSSLYRLKSLGILDLHGCSNLQR-LPECLGQLSSPITCNLAKTNIE-RIPE------- 239 (254)
Q Consensus 171 ~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~-~l~~------- 239 (254)
..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ....+..+ .|++|++.+|++. .+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 567889999999998877 5556667889999999998877654 11223334 8999999999986 4542
Q ss_pred hhhhhcccCccc
Q 042890 240 SIIQLFVSGYLL 251 (254)
Q Consensus 240 ~~~~~~~L~~L~ 251 (254)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356788888776
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=5.7e-07 Score=66.07 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=62.8
Q ss_pred CCcCeEeccccccccc-chhhhhccccCEEeccCCc-CcccCCccccCC----CccCEEEecCCC-CCcccCccccCCCC
Q 042890 151 GNISWLFLRGIAIEEL-PSSIERQLRLSWLDLSDCK-RLKSLPSSLYRL----KSLGILDLHGCS-NLQRLPECLGQLSS 223 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~ 223 (254)
..|+.|++++|.++.. -..+.++++|++|++++|. +++.-...+..+ ++|+.|++++|. +.+.-...+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 5799999999988721 2335788999999999997 444333345553 479999999996 44443345667999
Q ss_pred CcEEeccCCC-CC
Q 042890 224 PITCNLAKTN-IE 235 (254)
Q Consensus 224 L~~L~l~~n~-l~ 235 (254)
|+.|++++|. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999986 44
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.11 E-value=0.00042 Score=57.70 Aligned_cols=81 Identities=7% Similarity=0.050 Sum_probs=54.8
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCCCCCCC-hhhhhhcccC
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTNIERIP-ESIIQLFVSG 248 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~ 248 (254)
|..+.+|+.+.+..+- ...-..++.+++.|+.+.+.. .+...-..+|..|.+|+.+.+..+ ++.+. .++..|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 4556677777775432 222234577788888888864 454555567888999999999754 55553 4577889998
Q ss_pred ccccc
Q 042890 249 YLLLS 253 (254)
Q Consensus 249 ~L~ls 253 (254)
.+.+.
T Consensus 338 ~i~ip 342 (394)
T 4gt6_A 338 RIAIP 342 (394)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88763
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.03 E-value=0.00094 Score=55.14 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=16.3
Q ss_pred eeCCcccCCCCcceEEEeecc
Q 042890 8 RLNPNTFTKMPKLRFLKFYSS 28 (254)
Q Consensus 8 ~~~~~~~~~~~~L~~L~l~~~ 28 (254)
.+...+|..+.+|+.+.+..+
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~ 79 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST 79 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc
Confidence 345678999999999998654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=1.7e-05 Score=62.40 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=55.9
Q ss_pred CCcCeEeccccccccc---chhhhhccccCEEeccCCcCcccCCccccCCC--ccCEEEecCCCCCcccCc-------cc
Q 042890 151 GNISWLFLRGIAIEEL---PSSIERQLRLSWLDLSDCKRLKSLPSSLYRLK--SLGILDLHGCSNLQRLPE-------CL 218 (254)
Q Consensus 151 ~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~-------~~ 218 (254)
+.|+.|++++|.++.+ |..+..+++|+.|++++|.+.+. ..+..+. +|+.|++.+|.+.+.+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 5777777887877754 35567889999999999987764 2233333 899999999888765542 35
Q ss_pred cCCCCCcEEec
Q 042890 219 GQLSSPITCNL 229 (254)
Q Consensus 219 ~~l~~L~~L~l 229 (254)
..+++|+.||-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 56888888873
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.45 E-value=0.0084 Score=49.35 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=61.7
Q ss_pred ccCCcccccEEeccCCcCCCccCCCCCCCCcccEEeccCCCCCccccccc---cCCcCeEecccccccccch-hhhhccc
Q 042890 100 LMPRMKKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERQLR 175 (254)
Q Consensus 100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~L~~L~l~~~~~~~l~~-~~~~~~~ 175 (254)
.+..+..++.+.+..+. ...-...+..+..|+.+.+..+ ...+.... ...++.+.+..+ ++.++. .+.++++
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccce-eEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 33444555555554431 1111223445555666655442 11111111 134555555432 333433 2555666
Q ss_pred cCEEeccCCcCcccCCccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccC
Q 042890 176 LSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAK 231 (254)
Q Consensus 176 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 231 (254)
|+.+.+.++.+...-..+|.++.+|+.+.+.. ++...-..+|.+|.+|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence 77776665544333334566667777776654 23333445666666666666643
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=0.00012 Score=54.62 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=69.9
Q ss_pred CCCCcccEEeccCC-CCCcc----cccc--ccCCcCeEeccccccc-----ccchhhhhccccCEEeccCCcCccc----
Q 042890 126 FNLEFLTKLDLSGC-SKLKR----LPEI--SSGNISWLFLRGIAIE-----ELPSSIERQLRLSWLDLSDCKRLKS---- 189 (254)
Q Consensus 126 ~~l~~L~~L~l~~~-~~~~~----~p~~--~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~n~~~~~---- 189 (254)
..-+.|+.|+++++ .+... +... .-+.|+.|++++|.++ .+...+...+.|++|+++.|.+.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34567889999875 33221 1110 1267888888888877 3555666777888999988887652
Q ss_pred CCccccCCCccCEEEecCCCC--Cc-----ccCccccCCCCCcEEeccCCCC
Q 042890 190 LPSSLYRLKSLGILDLHGCSN--LQ-----RLPECLGQLSSPITCNLAKTNI 234 (254)
Q Consensus 190 ~~~~l~~l~~L~~L~l~~~~~--~~-----~~~~~~~~l~~L~~L~l~~n~l 234 (254)
+...+..-..|+.|++++|.. .+ .+.+.+..-+.|+.|++..+.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334455666788888875422 22 2334455567888888877664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00083 Score=50.13 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=59.3
Q ss_pred CcccccEEeccCC-cCCC----ccCCCCCCCCcccEEeccCCCCCccccccc------cCCcCeEeccccccc-----cc
Q 042890 103 RMKKLVILNLRGS-KSLK----SLPSGIFNLEFLTKLDLSGCSKLKRLPEIS------SGNISWLFLRGIAIE-----EL 166 (254)
Q Consensus 103 ~~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~------~~~L~~L~l~~~~~~-----~l 166 (254)
.-+.|+.|+++++ .+.. .+.+.+..-..|+.|++++|.+...-.... -+.|+.|++..|.|+ .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456777777764 4321 123334444567777777776543322111 156777777777776 24
Q ss_pred chhhhhccccCEEeccCCc---Ccc----cCCccccCCCccCEEEecCC
Q 042890 167 PSSIERQLRLSWLDLSDCK---RLK----SLPSSLYRLKSLGILDLHGC 208 (254)
Q Consensus 167 ~~~~~~~~~L~~L~l~~n~---~~~----~~~~~l~~l~~L~~L~l~~~ 208 (254)
...+...+.|+.|++++|. +.. .+...+..-+.|+.++++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 4445555667777776542 222 23334455567777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.42 E-value=0.0041 Score=43.12 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=33.3
Q ss_pred EEeccCCCCC-ccccccccCCcCeEecccccccccchh-hhhccccCEEeccCCcC
Q 042890 133 KLDLSGCSKL-KRLPEISSGNISWLFLRGIAIEELPSS-IERQLRLSWLDLSDCKR 186 (254)
Q Consensus 133 ~L~l~~~~~~-~~~p~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~n~~ 186 (254)
.++.+++... ..+|.....+++.|++++|.++.+|.. +..+++|+.|++++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555553332 155654446677777777777777654 55666777777777653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.22 E-value=0.01 Score=41.03 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=25.3
Q ss_pred eEeccccccc--ccchhhhhccccCEEeccCCcCcccCCccccCCCccCEEEecCCCC
Q 042890 155 WLFLRGIAIE--ELPSSIERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHGCSN 210 (254)
Q Consensus 155 ~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~ 210 (254)
.++.++++++ .+|..+. ++++.|++++|.+...-+..|..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 3444444444 4443221 2455555555554443333444555555555555443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.69 E-value=13 Score=23.93 Aligned_cols=37 Identities=11% Similarity=-0.036 Sum_probs=15.8
Q ss_pred hhhccccCEEeccCCcCcccCCccccCCCccCEEEecC
Q 042890 170 IERQLRLSWLDLSDCKRLKSLPSSLYRLKSLGILDLHG 207 (254)
Q Consensus 170 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 207 (254)
|.++++|+.+.+-.+ +...-..+|.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444445555554432 1221222344555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.88 E-value=13 Score=23.82 Aligned_cols=42 Identities=5% Similarity=-0.123 Sum_probs=34.2
Q ss_pred CccccCCCccCEEEecCCCCCcccCccccCCCCCcEEeccCCC
Q 042890 191 PSSLYRLKSLGILDLHGCSNLQRLPECLGQLSSPITCNLAKTN 233 (254)
Q Consensus 191 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 233 (254)
..+|.++.+|+.+.+.. .+..+-..+|..|.+|+.+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp SCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred HHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 35688999999999976 4656666789999999999997754
Done!