Query 042891
Match_columns 423
No_of_seqs 310 out of 2177
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-57 3.5E-62 477.5 25.0 396 8-420 5-474 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 7E-39 1.5E-43 303.2 10.2 223 165-392 1-285 (287)
3 PLN03210 Resistant to P. syrin 100.0 6E-29 1.3E-33 274.1 18.7 239 158-419 182-485 (1153)
4 PRK00080 ruvB Holliday junctio 98.9 5.3E-08 1.1E-12 93.8 14.4 165 159-330 24-224 (328)
5 TIGR00635 ruvB Holliday juncti 98.8 6.4E-08 1.4E-12 92.3 14.4 243 160-422 4-293 (305)
6 PF01637 Arch_ATPase: Archaeal 98.7 5.9E-08 1.3E-12 88.3 8.2 44 162-211 1-44 (234)
7 PRK00411 cdc6 cell division co 98.6 3.3E-07 7.1E-12 90.7 12.4 253 158-419 28-359 (394)
8 PRK04841 transcriptional regul 98.6 2.3E-06 4.9E-11 93.9 17.8 199 186-416 31-308 (903)
9 TIGR02928 orc1/cdc6 family rep 98.5 4.1E-06 8.9E-11 82.0 16.4 252 160-420 15-352 (365)
10 TIGR03015 pepcterm_ATPase puta 98.5 2.6E-06 5.6E-11 79.6 14.0 142 187-332 43-242 (269)
11 PF05496 RuvB_N: Holliday junc 98.3 1.2E-06 2.6E-11 77.7 7.2 159 159-328 23-221 (233)
12 PRK06893 DNA replication initi 98.3 3.4E-06 7.4E-11 76.8 10.4 134 187-329 39-204 (229)
13 PRK13342 recombination factor 98.2 2.8E-05 6.2E-10 77.3 15.1 153 161-327 13-195 (413)
14 COG2256 MGS1 ATPase related to 98.2 2.8E-05 6.1E-10 74.0 12.6 149 158-322 28-206 (436)
15 TIGR03420 DnaA_homol_Hda DnaA 98.1 2.1E-05 4.6E-10 71.4 11.1 151 165-330 22-203 (226)
16 cd01128 rho_factor Transcripti 98.1 5.7E-06 1.2E-10 75.9 6.0 55 187-242 16-72 (249)
17 PRK09376 rho transcription ter 98.1 4.3E-06 9.4E-11 80.3 4.7 51 188-239 170-222 (416)
18 PF05729 NACHT: NACHT domain 98.0 7.8E-06 1.7E-10 70.1 5.9 107 188-294 1-162 (166)
19 PF13191 AAA_16: AAA ATPase do 98.0 4.6E-06 1E-10 73.1 4.5 49 161-212 1-49 (185)
20 PTZ00202 tuzin; Provisional 98.0 2.7E-05 5.8E-10 75.6 9.5 81 155-246 257-337 (550)
21 PRK08727 hypothetical protein; 98.0 0.00012 2.7E-09 66.8 12.8 129 188-325 42-201 (233)
22 PRK12323 DNA polymerase III su 97.9 0.00012 2.7E-09 74.8 12.5 160 159-328 15-225 (700)
23 PRK08084 DNA replication initi 97.9 0.00018 3.9E-09 65.8 12.3 135 187-328 45-209 (235)
24 COG2909 MalT ATP-dependent tra 97.9 7.5E-05 1.6E-09 77.3 10.3 214 169-416 24-314 (894)
25 PRK14961 DNA polymerase III su 97.9 0.00026 5.7E-09 69.1 13.9 156 160-325 16-217 (363)
26 PRK14949 DNA polymerase III su 97.9 0.00019 4.2E-09 75.8 13.3 158 159-326 15-218 (944)
27 PRK07003 DNA polymerase III su 97.8 0.00019 4E-09 74.6 12.5 158 160-327 16-220 (830)
28 PRK08118 topology modulation p 97.8 1.4E-05 2.9E-10 69.1 3.2 34 189-222 3-37 (167)
29 PRK09087 hypothetical protein; 97.8 0.00015 3.3E-09 65.7 10.1 120 187-327 44-194 (226)
30 PRK12402 replication factor C 97.8 0.00028 6E-09 68.2 12.5 45 160-210 15-59 (337)
31 PRK05564 DNA polymerase III su 97.8 0.00042 9E-09 66.3 13.4 153 160-326 4-188 (313)
32 PRK11331 5-methylcytosine-spec 97.7 0.0001 2.2E-09 72.5 8.0 68 160-235 175-242 (459)
33 PRK14960 DNA polymerase III su 97.7 0.00058 1.3E-08 70.1 13.3 157 159-325 14-216 (702)
34 COG2255 RuvB Holliday junction 97.7 0.00017 3.6E-09 65.7 8.4 161 159-326 25-221 (332)
35 KOG2028 ATPase related to the 97.7 0.0003 6.5E-09 66.2 10.2 134 185-322 160-330 (554)
36 PRK14963 DNA polymerase III su 97.7 0.00045 9.7E-09 70.1 12.4 156 160-325 14-214 (504)
37 PLN03025 replication factor C 97.7 0.00049 1.1E-08 66.0 12.1 152 160-323 13-195 (319)
38 PRK14964 DNA polymerase III su 97.7 0.00061 1.3E-08 68.4 13.0 157 159-325 12-214 (491)
39 PRK14957 DNA polymerase III su 97.7 0.0005 1.1E-08 70.0 12.6 159 160-328 16-221 (546)
40 PRK07994 DNA polymerase III su 97.7 0.00049 1.1E-08 71.3 12.6 158 159-326 15-218 (647)
41 PRK14956 DNA polymerase III su 97.6 0.00047 1E-08 68.6 11.4 155 159-323 17-217 (484)
42 PRK05642 DNA replication initi 97.6 0.00078 1.7E-08 61.5 12.0 134 187-329 45-209 (234)
43 PRK14951 DNA polymerase III su 97.6 0.00081 1.7E-08 69.5 13.3 158 159-326 15-223 (618)
44 PRK00440 rfc replication facto 97.6 0.00086 1.9E-08 64.2 12.9 154 160-325 17-200 (319)
45 PRK13341 recombination factor 97.6 0.00042 9.1E-09 73.1 11.4 149 160-322 28-211 (725)
46 PRK06645 DNA polymerase III su 97.6 0.00099 2.2E-08 67.4 13.4 156 160-325 21-226 (507)
47 PRK05896 DNA polymerase III su 97.6 0.0011 2.3E-08 68.0 13.6 162 159-330 15-223 (605)
48 TIGR01242 26Sp45 26S proteasom 97.6 0.00014 3E-09 71.1 7.2 52 159-210 121-179 (364)
49 PRK14962 DNA polymerase III su 97.6 0.0011 2.3E-08 66.8 13.3 176 160-345 14-239 (472)
50 PF14516 AAA_35: AAA-like doma 97.6 0.0031 6.8E-08 60.7 15.9 161 158-335 9-246 (331)
51 PRK14958 DNA polymerase III su 97.6 0.00099 2.1E-08 67.7 12.9 157 160-326 16-218 (509)
52 TIGR00767 rho transcription te 97.6 0.00011 2.4E-09 71.1 5.5 56 187-243 168-225 (415)
53 PRK08903 DnaA regulatory inact 97.5 0.00092 2E-08 60.8 11.2 54 275-332 150-203 (227)
54 cd00009 AAA The AAA+ (ATPases 97.5 0.00021 4.6E-09 59.3 6.4 57 163-227 1-57 (151)
55 PTZ00112 origin recognition co 97.5 0.00032 7E-09 73.5 8.5 83 159-242 754-841 (1164)
56 COG3903 Predicted ATPase [Gene 97.5 0.00016 3.5E-09 69.3 5.8 144 186-335 13-196 (414)
57 PRK09111 DNA polymerase III su 97.5 0.0017 3.7E-08 67.1 13.4 159 159-327 23-232 (598)
58 PRK07764 DNA polymerase III su 97.5 0.0017 3.7E-08 69.5 13.6 155 160-325 15-218 (824)
59 PRK04195 replication factor C 97.5 0.0014 3E-08 66.6 12.3 156 160-327 14-201 (482)
60 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00068 1.5E-08 73.1 10.5 45 160-210 187-231 (852)
61 PF13173 AAA_14: AAA domain 97.4 0.00032 7E-09 57.6 6.1 97 188-287 3-127 (128)
62 PRK08691 DNA polymerase III su 97.4 0.0015 3.2E-08 67.8 11.9 158 159-326 15-218 (709)
63 PRK14969 DNA polymerase III su 97.4 0.0017 3.6E-08 66.4 12.4 154 160-323 16-215 (527)
64 PRK07940 DNA polymerase III su 97.4 0.0019 4E-08 63.5 12.2 159 160-328 5-213 (394)
65 PRK14952 DNA polymerase III su 97.4 0.0023 4.9E-08 65.9 13.1 153 160-323 13-214 (584)
66 PRK14955 DNA polymerase III su 97.4 0.001 2.2E-08 65.9 10.3 155 160-325 16-225 (397)
67 PRK09112 DNA polymerase III su 97.4 0.0033 7.1E-08 60.9 13.4 159 158-328 21-240 (351)
68 TIGR02397 dnaX_nterm DNA polym 97.4 0.0052 1.1E-07 59.8 14.7 159 160-329 14-219 (355)
69 PF13401 AAA_22: AAA domain; P 97.3 0.00018 4E-09 59.1 3.6 61 187-247 4-67 (131)
70 PRK14950 DNA polymerase III su 97.3 0.0047 1E-07 64.2 14.5 158 160-327 16-220 (585)
71 smart00763 AAA_PrkA PrkA AAA d 97.3 0.00021 4.5E-09 68.4 4.0 51 161-211 52-102 (361)
72 PF05621 TniB: Bacterial TniB 97.3 0.0074 1.6E-07 56.3 13.7 74 168-246 45-124 (302)
73 PF13207 AAA_17: AAA domain; P 97.2 0.00024 5.2E-09 57.6 3.1 22 189-210 1-22 (121)
74 PRK14954 DNA polymerase III su 97.2 0.0039 8.4E-08 64.7 12.5 154 159-323 15-223 (620)
75 PRK14959 DNA polymerase III su 97.2 0.0062 1.3E-07 62.8 13.7 163 160-332 16-225 (624)
76 COG1222 RPT1 ATP-dependent 26S 97.2 0.0024 5.2E-08 60.3 9.6 165 161-332 152-371 (406)
77 PRK03992 proteasome-activating 97.2 0.0007 1.5E-08 66.7 6.2 51 160-210 131-188 (389)
78 PRK07261 topology modulation p 97.2 0.00083 1.8E-08 58.2 5.9 51 189-239 2-53 (171)
79 PRK07471 DNA polymerase III su 97.1 0.013 2.8E-07 57.1 14.5 47 158-209 17-63 (365)
80 PRK07133 DNA polymerase III su 97.1 0.011 2.4E-07 61.9 14.1 153 160-323 18-214 (725)
81 PF00308 Bac_DnaA: Bacterial d 97.1 0.0049 1.1E-07 55.7 10.2 129 186-326 33-206 (219)
82 PRK14970 DNA polymerase III su 97.1 0.0094 2E-07 58.4 13.0 154 160-323 17-204 (367)
83 TIGR00678 holB DNA polymerase 97.1 0.0093 2E-07 52.4 11.7 40 275-324 148-187 (188)
84 PRK14953 DNA polymerase III su 97.0 0.015 3.2E-07 59.0 14.3 158 160-327 16-219 (486)
85 PRK06696 uridine kinase; Valid 97.0 0.00079 1.7E-08 61.0 4.7 43 165-210 3-45 (223)
86 COG0466 Lon ATP-dependent Lon 97.0 0.00051 1.1E-08 70.1 3.5 51 159-209 322-372 (782)
87 COG3899 Predicted ATPase [Gene 97.0 0.0036 7.8E-08 67.6 10.1 55 275-334 212-266 (849)
88 TIGR02639 ClpA ATP-dependent C 97.0 0.0042 9.1E-08 66.4 10.4 45 160-210 182-226 (731)
89 PRK14965 DNA polymerase III su 97.0 0.015 3.3E-07 60.2 13.9 159 159-328 15-221 (576)
90 PRK14971 DNA polymerase III su 97.0 0.016 3.4E-07 60.5 13.9 155 160-325 17-219 (614)
91 PRK06620 hypothetical protein; 96.9 0.021 4.5E-07 51.4 12.9 122 188-325 45-186 (214)
92 KOG2004 Mitochondrial ATP-depe 96.9 0.0025 5.4E-08 65.1 7.5 52 158-209 409-460 (906)
93 PRK14948 DNA polymerase III su 96.9 0.017 3.8E-07 60.2 13.9 158 160-327 16-221 (620)
94 PRK14087 dnaA chromosomal repl 96.9 0.009 1.9E-07 60.0 11.3 70 258-329 242-320 (450)
95 PTZ00361 26 proteosome regulat 96.9 0.0027 5.8E-08 63.1 7.1 51 160-210 183-240 (438)
96 COG1474 CDC6 Cdc6-related prot 96.8 0.0032 7E-08 61.2 7.1 78 162-243 19-98 (366)
97 PRK06305 DNA polymerase III su 96.8 0.016 3.4E-07 58.2 12.3 45 160-209 17-61 (451)
98 COG0593 DnaA ATPase involved i 96.8 0.023 4.9E-07 55.6 12.6 109 186-296 112-258 (408)
99 TIGR03346 chaperone_ClpB ATP-d 96.8 0.012 2.5E-07 64.1 11.8 45 160-210 173-217 (852)
100 PRK11034 clpA ATP-dependent Cl 96.7 0.0072 1.6E-07 64.3 9.5 45 160-210 186-230 (758)
101 PRK15455 PrkA family serine pr 96.7 0.001 2.2E-08 67.1 3.0 49 161-209 77-125 (644)
102 PRK07667 uridine kinase; Provi 96.7 0.0026 5.7E-08 56.2 5.2 38 169-210 3-40 (193)
103 CHL00181 cbbX CbbX; Provisiona 96.7 0.021 4.6E-07 53.7 11.4 49 161-209 24-81 (287)
104 PRK12422 chromosomal replicati 96.7 0.016 3.4E-07 58.1 11.0 24 187-210 141-164 (445)
105 PRK06647 DNA polymerase III su 96.7 0.033 7.2E-07 57.4 13.6 156 160-326 16-218 (563)
106 PTZ00454 26S protease regulato 96.6 0.015 3.2E-07 57.3 10.3 51 160-210 145-202 (398)
107 PRK08451 DNA polymerase III su 96.6 0.039 8.5E-07 56.2 13.3 157 160-326 14-216 (535)
108 PF00485 PRK: Phosphoribulokin 96.6 0.0017 3.6E-08 57.6 3.1 21 189-209 1-21 (194)
109 PRK05563 DNA polymerase III su 96.6 0.043 9.4E-07 56.7 13.8 156 159-325 15-217 (559)
110 PRK05480 uridine/cytidine kina 96.6 0.0021 4.5E-08 57.6 3.7 26 185-210 4-29 (209)
111 COG1618 Predicted nucleotide k 96.6 0.002 4.3E-08 54.0 3.2 25 187-211 5-29 (179)
112 PTZ00301 uridine kinase; Provi 96.5 0.003 6.4E-08 56.5 4.4 23 187-209 3-25 (210)
113 PRK14086 dnaA chromosomal repl 96.5 0.052 1.1E-06 55.9 13.6 60 258-321 413-481 (617)
114 PF13238 AAA_18: AAA domain; P 96.5 0.002 4.3E-08 52.5 2.9 21 190-210 1-21 (129)
115 TIGR00763 lon ATP-dependent pr 96.5 0.016 3.4E-07 62.4 10.5 52 159-210 319-370 (775)
116 PRK14088 dnaA chromosomal repl 96.5 0.025 5.3E-07 56.7 11.0 123 187-321 130-298 (440)
117 PRK00149 dnaA chromosomal repl 96.5 0.043 9.3E-07 55.3 12.7 154 186-347 147-348 (450)
118 PRK05541 adenylylsulfate kinas 96.5 0.0035 7.7E-08 54.4 4.3 36 186-223 6-41 (176)
119 PRK08233 hypothetical protein; 96.4 0.0026 5.6E-08 55.5 3.4 24 187-210 3-26 (182)
120 CHL00095 clpC Clp protease ATP 96.4 0.0026 5.6E-08 68.8 4.0 45 160-210 179-223 (821)
121 TIGR00362 DnaA chromosomal rep 96.4 0.023 5E-07 56.5 10.5 46 275-324 261-306 (405)
122 COG1102 Cmk Cytidylate kinase 96.4 0.0037 8E-08 52.4 3.9 44 189-245 2-45 (179)
123 TIGR00235 udk uridine kinase. 96.4 0.0027 6E-08 56.8 3.5 25 186-210 5-29 (207)
124 KOG0734 AAA+-type ATPase conta 96.4 0.018 3.9E-07 57.1 9.2 52 160-211 304-361 (752)
125 TIGR02881 spore_V_K stage V sp 96.4 0.0041 8.8E-08 57.9 4.7 49 161-209 7-64 (261)
126 PF12061 DUF3542: Protein of u 96.4 0.0079 1.7E-07 55.5 6.1 74 6-80 296-370 (402)
127 TIGR02903 spore_lon_C ATP-depe 96.3 0.0058 1.3E-07 63.8 5.8 47 160-212 154-200 (615)
128 PF13671 AAA_33: AAA domain; P 96.3 0.0031 6.7E-08 52.6 3.1 21 189-209 1-21 (143)
129 KOG0989 Replication factor C, 96.3 0.015 3.4E-07 53.8 7.7 153 159-321 35-223 (346)
130 cd02019 NK Nucleoside/nucleoti 96.3 0.0032 6.9E-08 45.5 2.7 22 189-210 1-22 (69)
131 smart00382 AAA ATPases associa 96.3 0.005 1.1E-07 50.4 4.0 37 188-226 3-39 (148)
132 KOG2543 Origin recognition com 96.3 0.013 2.7E-07 56.0 7.0 77 159-243 5-81 (438)
133 PRK06547 hypothetical protein; 96.3 0.0069 1.5E-07 52.4 4.9 26 185-210 13-38 (172)
134 PRK06762 hypothetical protein; 96.3 0.0038 8.3E-08 53.6 3.4 23 188-210 3-25 (166)
135 PF00004 AAA: ATPase family as 96.2 0.0038 8.2E-08 51.0 3.0 22 190-211 1-22 (132)
136 PF10443 RNA12: RNA12 protein; 96.2 0.081 1.8E-06 51.7 12.2 82 258-339 186-289 (431)
137 TIGR02880 cbbX_cfxQ probable R 96.2 0.049 1.1E-06 51.3 10.6 21 189-209 60-80 (284)
138 TIGR02237 recomb_radB DNA repa 96.1 0.009 2E-07 53.4 5.3 48 186-236 11-58 (209)
139 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0045 9.8E-08 54.2 3.3 24 186-209 2-25 (188)
140 COG0572 Udk Uridine kinase [Nu 96.1 0.0051 1.1E-07 54.6 3.4 26 185-210 6-31 (218)
141 PRK03839 putative kinase; Prov 96.1 0.0049 1.1E-07 53.8 3.1 22 189-210 2-23 (180)
142 PHA02544 44 clamp loader, smal 96.1 0.0071 1.5E-07 57.9 4.5 47 159-210 20-66 (316)
143 PRK05707 DNA polymerase III su 96.0 0.1 2.3E-06 50.1 12.3 63 258-328 140-203 (328)
144 PRK10865 protein disaggregatio 96.0 0.0059 1.3E-07 66.2 4.1 45 160-210 178-222 (857)
145 KOG0731 AAA+-type ATPase conta 96.0 0.04 8.6E-07 57.7 9.8 156 160-324 311-520 (774)
146 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.014 3.1E-07 53.1 6.1 57 186-243 18-78 (235)
147 PRK09270 nucleoside triphospha 96.0 0.01 2.3E-07 53.9 5.1 26 185-210 31-56 (229)
148 cd02023 UMPK Uridine monophosp 96.0 0.0046 1E-07 54.9 2.7 21 189-209 1-21 (198)
149 PHA00729 NTP-binding motif con 96.0 0.01 2.2E-07 53.3 4.7 25 186-210 16-40 (226)
150 PRK12377 putative replication 95.9 0.0081 1.7E-07 55.2 4.1 39 187-227 101-139 (248)
151 COG1223 Predicted ATPase (AAA+ 95.9 0.076 1.7E-06 48.2 10.0 52 160-211 121-175 (368)
152 TIGR00554 panK_bact pantothena 95.9 0.011 2.5E-07 55.4 5.1 25 185-209 60-84 (290)
153 PRK13531 regulatory ATPase Rav 95.9 0.0084 1.8E-07 59.8 4.3 42 161-210 21-62 (498)
154 cd02025 PanK Pantothenate kina 95.9 0.0051 1.1E-07 55.6 2.6 22 189-210 1-22 (220)
155 PRK04040 adenylate kinase; Pro 95.9 0.0073 1.6E-07 53.1 3.3 23 188-210 3-25 (188)
156 cd02024 NRK1 Nicotinamide ribo 95.8 0.0061 1.3E-07 53.4 2.7 22 189-210 1-22 (187)
157 TIGR01241 FtsH_fam ATP-depende 95.8 0.1 2.2E-06 53.3 11.9 53 159-211 54-112 (495)
158 PF00448 SRP54: SRP54-type pro 95.8 0.02 4.3E-07 50.7 5.9 57 187-245 1-58 (196)
159 TIGR01359 UMP_CMP_kin_fam UMP- 95.8 0.0063 1.4E-07 53.1 2.7 22 189-210 1-22 (183)
160 PRK00131 aroK shikimate kinase 95.8 0.0083 1.8E-07 51.7 3.3 24 187-210 4-27 (175)
161 TIGR02322 phosphon_PhnN phosph 95.8 0.0079 1.7E-07 52.4 3.1 23 188-210 2-24 (179)
162 PRK10751 molybdopterin-guanine 95.8 0.01 2.3E-07 51.1 3.8 25 186-210 5-29 (173)
163 PRK05439 pantothenate kinase; 95.8 0.016 3.6E-07 54.8 5.4 26 184-209 83-108 (311)
164 PRK00625 shikimate kinase; Pro 95.7 0.0076 1.7E-07 52.2 2.9 22 189-210 2-23 (173)
165 KOG0741 AAA+-type ATPase [Post 95.7 0.078 1.7E-06 52.8 9.9 56 258-318 644-704 (744)
166 PRK00889 adenylylsulfate kinas 95.7 0.011 2.4E-07 51.3 3.7 25 186-210 3-27 (175)
167 cd02028 UMPK_like Uridine mono 95.7 0.0078 1.7E-07 52.5 2.7 22 189-210 1-22 (179)
168 TIGR03263 guanyl_kin guanylate 95.7 0.0088 1.9E-07 52.1 3.0 22 188-209 2-23 (180)
169 PRK06217 hypothetical protein; 95.6 0.0087 1.9E-07 52.4 2.9 35 189-224 3-39 (183)
170 KOG0728 26S proteasome regulat 95.6 0.14 3.1E-06 46.1 10.4 51 161-211 147-205 (404)
171 PF00910 RNA_helicase: RNA hel 95.6 0.0078 1.7E-07 47.7 2.2 21 190-210 1-21 (107)
172 cd02020 CMPK Cytidine monophos 95.6 0.0088 1.9E-07 50.0 2.7 22 189-210 1-22 (147)
173 COG0467 RAD55 RecA-superfamily 95.6 0.026 5.7E-07 52.4 6.1 43 185-229 21-63 (260)
174 TIGR00390 hslU ATP-dependent p 95.6 0.038 8.1E-07 54.2 7.2 51 160-210 12-70 (441)
175 PF03205 MobB: Molybdopterin g 95.6 0.011 2.4E-07 49.3 3.1 39 188-227 1-39 (140)
176 PF07728 AAA_5: AAA domain (dy 95.5 0.01 2.2E-07 49.2 2.9 21 190-210 2-22 (139)
177 KOG0652 26S proteasome regulat 95.5 0.32 6.9E-06 44.2 12.3 151 160-313 171-372 (424)
178 PF00625 Guanylate_kin: Guanyl 95.5 0.017 3.6E-07 50.6 4.2 37 187-225 2-38 (183)
179 PRK08769 DNA polymerase III su 95.5 0.1 2.2E-06 49.8 9.8 61 258-328 147-208 (319)
180 cd01394 radB RadB. The archaea 95.5 0.026 5.6E-07 50.9 5.5 43 186-230 18-60 (218)
181 PRK10787 DNA-binding ATP-depen 95.5 0.011 2.4E-07 63.2 3.6 51 159-209 321-371 (784)
182 cd00227 CPT Chloramphenicol (C 95.5 0.011 2.5E-07 51.2 3.1 23 188-210 3-25 (175)
183 TIGR01243 CDC48 AAA family ATP 95.5 0.095 2.1E-06 56.3 10.7 51 160-210 453-510 (733)
184 PF07726 AAA_3: ATPase family 95.5 0.015 3.2E-07 47.2 3.4 27 190-218 2-28 (131)
185 PRK09361 radB DNA repair and r 95.5 0.024 5.2E-07 51.4 5.3 46 186-234 22-67 (225)
186 cd02021 GntK Gluconate kinase 95.5 0.01 2.2E-07 50.0 2.7 22 189-210 1-22 (150)
187 PRK13947 shikimate kinase; Pro 95.5 0.011 2.5E-07 50.9 2.9 22 189-210 3-24 (171)
188 COG1428 Deoxynucleoside kinase 95.4 0.012 2.5E-07 51.8 2.9 25 187-211 4-28 (216)
189 cd01393 recA_like RecA is a b 95.4 0.025 5.5E-07 51.2 5.3 53 186-241 18-76 (226)
190 COG0563 Adk Adenylate kinase a 95.4 0.011 2.5E-07 51.3 2.9 22 189-210 2-23 (178)
191 PRK05201 hslU ATP-dependent pr 95.4 0.039 8.4E-07 54.1 6.7 52 159-210 14-73 (443)
192 PF08477 Miro: Miro-like prote 95.4 0.013 2.9E-07 46.9 3.1 22 190-211 2-23 (119)
193 PRK03846 adenylylsulfate kinas 95.4 0.015 3.3E-07 51.5 3.8 24 186-209 23-46 (198)
194 PRK00300 gmk guanylate kinase; 95.4 0.014 2.9E-07 52.1 3.4 24 187-210 5-28 (205)
195 PF01583 APS_kinase: Adenylyls 95.4 0.019 4E-07 48.6 3.9 34 188-223 3-36 (156)
196 KOG1532 GTPase XAB1, interacts 95.4 0.013 2.8E-07 53.3 3.2 27 185-211 17-43 (366)
197 PF03308 ArgK: ArgK protein; 95.4 0.027 5.8E-07 51.3 5.2 39 168-210 14-52 (266)
198 cd01120 RecA-like_NTPases RecA 95.4 0.014 3.1E-07 49.3 3.4 40 189-230 1-40 (165)
199 PRK13949 shikimate kinase; Pro 95.4 0.013 2.7E-07 50.7 2.9 22 189-210 3-24 (169)
200 PRK14530 adenylate kinase; Pro 95.3 0.013 2.9E-07 52.7 3.1 22 189-210 5-26 (215)
201 PRK08058 DNA polymerase III su 95.3 0.17 3.8E-06 48.7 10.9 43 162-209 7-50 (329)
202 COG1703 ArgK Putative periplas 95.3 0.019 4.2E-07 53.1 4.0 64 170-237 38-101 (323)
203 cd00071 GMPK Guanosine monopho 95.3 0.013 2.9E-07 48.6 2.7 22 189-210 1-22 (137)
204 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.02 4.3E-07 54.6 4.0 51 159-209 60-110 (358)
205 PRK10536 hypothetical protein; 95.2 0.035 7.5E-07 50.9 5.4 55 159-221 54-108 (262)
206 COG1936 Predicted nucleotide k 95.2 0.014 3.1E-07 49.6 2.7 20 189-208 2-21 (180)
207 cd00464 SK Shikimate kinase (S 95.2 0.015 3.2E-07 49.1 2.9 21 190-210 2-22 (154)
208 PRK07399 DNA polymerase III su 95.2 0.33 7.1E-06 46.4 12.3 156 160-327 4-220 (314)
209 COG0194 Gmk Guanylate kinase [ 95.2 0.023 4.9E-07 49.0 3.9 23 188-210 5-27 (191)
210 PRK11889 flhF flagellar biosyn 95.2 0.026 5.7E-07 54.8 4.8 25 186-210 240-264 (436)
211 PLN02348 phosphoribulokinase 95.2 0.025 5.4E-07 55.0 4.6 25 185-209 47-71 (395)
212 PRK10078 ribose 1,5-bisphospho 95.2 0.016 3.4E-07 50.9 3.0 23 188-210 3-25 (186)
213 PRK14738 gmk guanylate kinase; 95.2 0.019 4.1E-07 51.3 3.6 25 186-210 12-36 (206)
214 TIGR02236 recomb_radA DNA repa 95.2 0.041 8.9E-07 52.5 6.1 57 186-243 94-154 (310)
215 CHL00176 ftsH cell division pr 95.2 0.13 2.8E-06 53.9 10.1 52 159-210 182-239 (638)
216 TIGR00150 HI0065_YjeE ATPase, 95.2 0.032 6.9E-07 45.9 4.5 24 187-210 22-45 (133)
217 TIGR01313 therm_gnt_kin carboh 95.1 0.013 2.9E-07 50.1 2.4 21 190-210 1-21 (163)
218 PF03193 DUF258: Protein of un 95.1 0.037 7.9E-07 47.1 4.9 36 167-211 24-59 (161)
219 PF04665 Pox_A32: Poxvirus A32 95.1 0.023 5E-07 51.6 3.9 35 188-224 14-48 (241)
220 TIGR00073 hypB hydrogenase acc 95.1 0.02 4.4E-07 51.1 3.4 27 184-210 19-45 (207)
221 PRK13975 thymidylate kinase; P 95.1 0.019 4.2E-07 50.7 3.2 24 188-211 3-26 (196)
222 cd01672 TMPK Thymidine monopho 95.1 0.042 9.2E-07 48.3 5.4 22 189-210 2-23 (200)
223 COG1124 DppF ABC-type dipeptid 95.0 0.019 4.1E-07 51.6 3.0 22 188-209 34-55 (252)
224 KOG2227 Pre-initiation complex 95.0 0.18 3.9E-06 49.6 9.8 83 158-242 148-230 (529)
225 PRK04301 radA DNA repair and r 95.0 0.044 9.6E-07 52.5 5.8 57 186-243 101-161 (317)
226 cd00820 PEPCK_HprK Phosphoenol 95.0 0.022 4.7E-07 44.9 3.0 21 188-208 16-36 (107)
227 PRK14527 adenylate kinase; Pro 95.0 0.022 4.9E-07 50.1 3.4 25 186-210 5-29 (191)
228 KOG0651 26S proteasome regulat 94.9 0.062 1.3E-06 50.0 6.1 82 185-268 164-284 (388)
229 cd02027 APSK Adenosine 5'-phos 94.9 0.019 4.1E-07 48.4 2.7 22 189-210 1-22 (149)
230 PRK05057 aroK shikimate kinase 94.9 0.022 4.9E-07 49.3 3.2 23 188-210 5-27 (172)
231 PRK13948 shikimate kinase; Pro 94.9 0.026 5.7E-07 49.2 3.6 25 186-210 9-33 (182)
232 PRK14737 gmk guanylate kinase; 94.9 0.025 5.5E-07 49.6 3.5 25 186-210 3-27 (186)
233 COG3640 CooC CO dehydrogenase 94.9 0.036 7.8E-07 49.5 4.4 21 189-209 2-22 (255)
234 KOG0991 Replication factor C, 94.9 0.032 6.9E-07 49.8 4.0 65 159-230 26-91 (333)
235 PRK12339 2-phosphoglycerate ki 94.9 0.025 5.4E-07 50.1 3.4 24 187-210 3-26 (197)
236 PF03266 NTPase_1: NTPase; In 94.9 0.021 4.5E-07 49.2 2.9 22 190-211 2-23 (168)
237 PF08423 Rad51: Rad51; InterP 94.9 0.057 1.2E-06 50.0 6.0 55 187-242 38-96 (256)
238 KOG0733 Nuclear AAA ATPase (VC 94.9 0.15 3.3E-06 51.7 9.2 129 187-322 545-718 (802)
239 KOG0730 AAA+-type ATPase [Post 94.9 0.16 3.4E-06 52.0 9.4 50 161-210 435-491 (693)
240 TIGR00064 ftsY signal recognit 94.9 0.033 7E-07 52.0 4.4 25 186-210 71-95 (272)
241 PRK06871 DNA polymerase III su 94.9 0.51 1.1E-05 45.2 12.5 59 258-325 141-200 (325)
242 COG1126 GlnQ ABC-type polar am 94.9 0.036 7.7E-07 49.0 4.2 34 188-224 29-62 (240)
243 COG1419 FlhF Flagellar GTP-bin 94.9 0.021 4.5E-07 55.3 3.0 24 186-209 202-226 (407)
244 PLN02200 adenylate kinase fami 94.8 0.027 5.7E-07 51.4 3.6 24 186-209 42-65 (234)
245 TIGR00176 mobB molybdopterin-g 94.8 0.021 4.6E-07 48.5 2.7 22 189-210 1-22 (155)
246 COG0464 SpoVK ATPases of the A 94.8 0.15 3.3E-06 52.0 9.5 105 185-296 274-424 (494)
247 PRK04182 cytidylate kinase; Pr 94.8 0.025 5.3E-07 49.1 3.1 22 189-210 2-23 (180)
248 TIGR03499 FlhF flagellar biosy 94.8 0.053 1.1E-06 51.0 5.5 25 186-210 193-217 (282)
249 cd01133 F1-ATPase_beta F1 ATP 94.8 0.045 9.7E-07 50.8 4.9 50 188-239 70-121 (274)
250 PRK15453 phosphoribulokinase; 94.8 0.029 6.3E-07 52.0 3.6 24 186-209 4-27 (290)
251 KOG0733 Nuclear AAA ATPase (VC 94.7 0.19 4.2E-06 51.0 9.4 53 159-211 189-247 (802)
252 PLN02318 phosphoribulokinase/u 94.7 0.039 8.5E-07 56.3 4.7 26 185-210 63-88 (656)
253 cd04139 RalA_RalB RalA/RalB su 94.7 0.027 5.9E-07 47.7 3.2 23 189-211 2-24 (164)
254 PRK09825 idnK D-gluconate kina 94.7 0.026 5.6E-07 49.1 3.1 23 188-210 4-26 (176)
255 PRK06090 DNA polymerase III su 94.7 0.58 1.3E-05 44.6 12.4 59 258-328 142-201 (319)
256 COG1100 GTPase SAR1 and relate 94.7 0.023 4.9E-07 51.1 2.8 24 188-211 6-29 (219)
257 PF13521 AAA_28: AAA domain; P 94.7 0.024 5.1E-07 48.5 2.7 21 190-210 2-22 (163)
258 cd01124 KaiC KaiC is a circadi 94.7 0.032 7E-07 48.7 3.6 38 189-228 1-38 (187)
259 KOG0744 AAA+-type ATPase [Post 94.7 0.025 5.5E-07 52.8 2.9 27 187-213 177-203 (423)
260 TIGR00602 rad24 checkpoint pro 94.7 0.04 8.7E-07 57.3 4.8 52 158-210 82-133 (637)
261 KOG2228 Origin recognition com 94.7 0.096 2.1E-06 49.3 6.7 49 160-210 24-72 (408)
262 PF06309 Torsin: Torsin; Inte 94.7 0.063 1.4E-06 43.4 4.8 50 161-210 26-76 (127)
263 PRK06761 hypothetical protein; 94.7 0.048 1E-06 50.9 4.8 24 188-211 4-27 (282)
264 TIGR02173 cyt_kin_arch cytidyl 94.6 0.029 6.2E-07 48.2 3.1 22 189-210 2-23 (171)
265 PRK13946 shikimate kinase; Pro 94.6 0.031 6.7E-07 48.9 3.3 24 187-210 10-33 (184)
266 PRK10463 hydrogenase nickel in 94.6 0.053 1.2E-06 50.7 5.0 27 184-210 101-127 (290)
267 TIGR01425 SRP54_euk signal rec 94.6 0.066 1.4E-06 53.0 5.9 25 185-209 98-122 (429)
268 PF02562 PhoH: PhoH-like prote 94.6 0.046 9.9E-07 48.5 4.3 53 164-224 4-56 (205)
269 PLN02796 D-glycerate 3-kinase 94.6 0.033 7.2E-07 53.2 3.6 25 186-210 99-123 (347)
270 COG2812 DnaX DNA polymerase II 94.6 0.085 1.8E-06 53.3 6.6 152 160-320 16-212 (515)
271 PF00005 ABC_tran: ABC transpo 94.5 0.028 6.1E-07 46.3 2.8 23 188-210 12-34 (137)
272 TIGR02640 gas_vesic_GvpN gas v 94.5 0.1 2.2E-06 48.5 6.7 21 189-209 23-43 (262)
273 COG2019 AdkA Archaeal adenylat 94.5 0.035 7.7E-07 46.9 3.2 23 187-209 4-26 (189)
274 COG1116 TauB ABC-type nitrate/ 94.5 0.031 6.6E-07 50.6 3.0 22 188-209 30-51 (248)
275 cd01428 ADK Adenylate kinase ( 94.5 0.029 6.2E-07 49.4 2.9 21 190-210 2-22 (194)
276 PRK07993 DNA polymerase III su 94.5 0.75 1.6E-05 44.3 12.8 59 258-325 142-201 (334)
277 TIGR00041 DTMP_kinase thymidyl 94.5 0.076 1.7E-06 46.8 5.6 23 188-210 4-26 (195)
278 PRK10416 signal recognition pa 94.5 0.038 8.1E-07 52.8 3.8 25 186-210 113-137 (318)
279 PRK13695 putative NTPase; Prov 94.5 0.034 7.4E-07 48.1 3.2 22 189-210 2-23 (174)
280 PRK00771 signal recognition pa 94.5 0.11 2.5E-06 51.7 7.2 26 185-210 93-118 (437)
281 PF01926 MMR_HSR1: 50S ribosom 94.5 0.033 7.2E-07 44.5 2.9 21 190-210 2-22 (116)
282 CHL00081 chlI Mg-protoporyphyr 94.5 0.039 8.5E-07 53.2 3.8 47 157-209 14-60 (350)
283 COG0237 CoaE Dephospho-CoA kin 94.4 0.032 7E-07 49.4 3.0 22 188-209 3-24 (201)
284 PRK14532 adenylate kinase; Pro 94.4 0.03 6.6E-07 49.1 2.9 21 190-210 3-23 (188)
285 TIGR01287 nifH nitrogenase iro 94.4 0.029 6.3E-07 52.5 2.9 22 188-209 1-22 (275)
286 cd01131 PilT Pilus retraction 94.4 0.045 9.7E-07 48.6 3.9 22 188-209 2-23 (198)
287 COG1373 Predicted ATPase (AAA+ 94.4 0.23 4.9E-06 49.2 9.2 21 189-209 39-59 (398)
288 PRK12724 flagellar biosynthesi 94.4 0.06 1.3E-06 52.9 5.0 25 186-210 222-246 (432)
289 cd02022 DPCK Dephospho-coenzym 94.4 0.03 6.5E-07 48.8 2.7 21 189-209 1-21 (179)
290 PRK08356 hypothetical protein; 94.4 0.032 7E-07 49.3 2.9 21 188-208 6-26 (195)
291 PTZ00088 adenylate kinase 1; P 94.4 0.032 6.9E-07 50.7 2.9 22 189-210 8-29 (229)
292 PF05659 RPW8: Arabidopsis bro 94.4 0.44 9.5E-06 39.9 9.5 109 2-129 5-115 (147)
293 PF10662 PduV-EutP: Ethanolami 94.4 0.035 7.5E-07 46.1 2.8 24 188-211 2-25 (143)
294 COG0003 ArsA Predicted ATPase 94.3 0.065 1.4E-06 51.1 5.0 48 187-236 2-49 (322)
295 cd03116 MobB Molybdenum is an 94.3 0.04 8.6E-07 47.0 3.3 23 188-210 2-24 (159)
296 TIGR02012 tigrfam_recA protein 94.3 0.053 1.2E-06 51.6 4.4 44 186-231 54-97 (321)
297 cd01130 VirB11-like_ATPase Typ 94.3 0.067 1.4E-06 46.9 4.8 22 188-209 26-47 (186)
298 TIGR03574 selen_PSTK L-seryl-t 94.3 0.03 6.5E-07 51.6 2.7 22 189-210 1-22 (249)
299 cd01862 Rab7 Rab7 subfamily. 94.3 0.034 7.4E-07 47.6 2.9 22 189-210 2-23 (172)
300 PRK03731 aroL shikimate kinase 94.3 0.036 7.7E-07 47.8 3.0 22 189-210 4-25 (171)
301 cd04155 Arl3 Arl3 subfamily. 94.3 0.039 8.4E-07 47.4 3.2 25 186-210 13-37 (173)
302 cd00983 recA RecA is a bacter 94.3 0.054 1.2E-06 51.6 4.3 44 186-231 54-97 (325)
303 PF03029 ATP_bind_1: Conserved 94.3 0.027 6E-07 51.4 2.3 20 192-211 1-20 (238)
304 PLN03187 meiotic recombination 94.3 0.071 1.5E-06 51.4 5.2 58 186-244 125-186 (344)
305 smart00173 RAS Ras subfamily o 94.3 0.037 8.1E-07 47.0 3.0 22 189-210 2-23 (164)
306 cd04119 RJL RJL (RabJ-Like) su 94.3 0.037 8E-07 47.0 3.0 22 189-210 2-23 (168)
307 PLN02165 adenylate isopentenyl 94.2 0.042 9E-07 52.4 3.5 25 186-210 42-66 (334)
308 PRK05703 flhF flagellar biosyn 94.2 0.063 1.4E-06 53.4 4.9 24 187-210 221-244 (424)
309 PF07693 KAP_NTPase: KAP famil 94.2 0.15 3.2E-06 48.9 7.4 76 167-245 3-83 (325)
310 KOG1969 DNA replication checkp 94.2 0.1 2.2E-06 54.0 6.3 52 186-242 325-376 (877)
311 PRK14531 adenylate kinase; Pro 94.2 0.04 8.6E-07 48.2 3.1 22 189-210 4-25 (183)
312 KOG0726 26S proteasome regulat 94.2 0.37 8E-06 44.6 9.3 51 161-211 186-243 (440)
313 COG0714 MoxR-like ATPases [Gen 94.2 0.11 2.5E-06 49.9 6.6 42 160-209 24-65 (329)
314 PF03215 Rad17: Rad17 cell cyc 94.2 0.054 1.2E-06 55.2 4.4 59 161-224 20-78 (519)
315 cd02117 NifH_like This family 94.2 0.038 8.2E-07 49.6 3.0 22 188-209 1-22 (212)
316 PRK14493 putative bifunctional 94.2 0.039 8.5E-07 51.5 3.1 23 188-210 2-24 (274)
317 TIGR00764 lon_rel lon-related 94.2 0.11 2.3E-06 54.3 6.7 75 159-244 17-92 (608)
318 COG0468 RecA RecA/RadA recombi 94.2 0.09 2E-06 48.9 5.5 49 185-235 58-106 (279)
319 cd01983 Fer4_NifH The Fer4_Nif 94.2 0.04 8.6E-07 42.0 2.7 22 189-210 1-22 (99)
320 PRK08099 bifunctional DNA-bind 94.2 0.038 8.3E-07 54.5 3.1 26 185-210 217-242 (399)
321 TIGR02238 recomb_DMC1 meiotic 94.1 0.069 1.5E-06 50.9 4.8 58 186-244 95-156 (313)
322 PRK01184 hypothetical protein; 94.1 0.039 8.5E-07 48.2 2.9 21 188-209 2-22 (184)
323 PF13245 AAA_19: Part of AAA d 94.1 0.051 1.1E-06 40.0 3.0 22 188-209 11-33 (76)
324 cd04138 H_N_K_Ras_like H-Ras/N 94.1 0.042 9.1E-07 46.3 3.0 22 189-210 3-24 (162)
325 cd04163 Era Era subfamily. Er 94.1 0.047 1E-06 46.0 3.3 24 187-210 3-26 (168)
326 TIGR03689 pup_AAA proteasome A 94.1 0.046 9.9E-07 55.4 3.6 51 160-210 182-239 (512)
327 PRK07429 phosphoribulokinase; 94.1 0.055 1.2E-06 51.8 4.0 26 185-210 6-31 (327)
328 cd02026 PRK Phosphoribulokinas 94.1 0.037 8E-07 51.7 2.7 21 189-209 1-21 (273)
329 PRK13765 ATP-dependent proteas 94.0 0.092 2E-06 54.8 5.7 76 159-244 30-105 (637)
330 cd03225 ABC_cobalt_CbiO_domain 94.0 0.044 9.5E-07 49.0 3.1 23 188-210 28-50 (211)
331 PRK08116 hypothetical protein; 94.0 0.037 8E-07 51.6 2.6 36 188-225 115-150 (268)
332 PRK08154 anaerobic benzoate ca 94.0 0.069 1.5E-06 50.9 4.5 25 186-210 132-156 (309)
333 PF13086 AAA_11: AAA domain; P 94.0 0.078 1.7E-06 47.8 4.8 52 189-240 19-75 (236)
334 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.0 0.044 9.4E-07 49.3 3.0 23 188-210 31-53 (218)
335 cd04113 Rab4 Rab4 subfamily. 94.0 0.045 9.7E-07 46.4 2.9 21 190-210 3-23 (161)
336 KOG3347 Predicted nucleotide k 94.0 0.041 8.8E-07 45.6 2.4 23 187-209 7-29 (176)
337 COG0703 AroK Shikimate kinase 94.0 0.048 1E-06 46.7 3.0 21 189-209 4-24 (172)
338 cd03114 ArgK-like The function 94.0 0.042 9.1E-07 46.3 2.6 22 189-210 1-22 (148)
339 PRK14722 flhF flagellar biosyn 94.0 0.058 1.3E-06 52.4 3.9 24 187-210 137-160 (374)
340 TIGR02030 BchI-ChlI magnesium 94.0 0.073 1.6E-06 51.2 4.6 45 159-209 3-47 (337)
341 TIGR02902 spore_lonB ATP-depen 94.0 0.07 1.5E-06 54.8 4.7 44 160-209 65-108 (531)
342 PHA02530 pseT polynucleotide k 94.0 0.047 1E-06 51.8 3.3 23 188-210 3-25 (300)
343 COG1120 FepC ABC-type cobalami 93.9 0.045 9.9E-07 50.2 3.0 35 187-224 28-62 (258)
344 TIGR02673 FtsE cell division A 93.9 0.069 1.5E-06 47.9 4.2 33 188-223 29-61 (214)
345 PRK13230 nitrogenase reductase 93.9 0.045 9.8E-07 51.4 3.1 22 188-209 2-23 (279)
346 PF05673 DUF815: Protein of un 93.9 0.053 1.2E-06 49.1 3.3 53 156-210 23-75 (249)
347 cd03115 SRP The signal recogni 93.9 0.05 1.1E-06 47.0 3.1 22 189-210 2-23 (173)
348 PHA02244 ATPase-like protein 93.9 0.1 2.2E-06 50.4 5.4 22 189-210 121-142 (383)
349 PRK09435 membrane ATPase/prote 93.9 0.11 2.3E-06 49.9 5.6 37 169-209 42-78 (332)
350 cd03297 ABC_ModC_molybdenum_tr 93.9 0.051 1.1E-06 48.8 3.3 24 186-210 23-46 (214)
351 TIGR00960 3a0501s02 Type II (G 93.9 0.046 1E-06 49.1 3.0 23 188-210 30-52 (216)
352 PRK13768 GTPase; Provisional 93.9 0.051 1.1E-06 50.2 3.3 22 188-209 3-24 (253)
353 TIGR01351 adk adenylate kinase 93.9 0.045 9.7E-07 49.0 2.9 20 190-209 2-21 (210)
354 PRK13236 nitrogenase reductase 93.9 0.056 1.2E-06 51.2 3.7 26 184-209 3-28 (296)
355 TIGR01166 cbiO cobalt transpor 93.9 0.047 1E-06 48.0 3.0 23 188-210 19-41 (190)
356 smart00175 RAB Rab subfamily o 93.9 0.047 1E-06 46.2 2.9 22 189-210 2-23 (164)
357 TIGR02239 recomb_RAD51 DNA rep 93.9 0.18 3.8E-06 48.3 7.0 57 186-243 95-155 (316)
358 PLN03046 D-glycerate 3-kinase; 93.9 0.061 1.3E-06 52.6 3.9 24 186-209 211-234 (460)
359 cd03229 ABC_Class3 This class 93.9 0.05 1.1E-06 47.3 3.1 22 188-209 27-48 (178)
360 PF02374 ArsA_ATPase: Anion-tr 93.9 0.075 1.6E-06 50.5 4.5 22 188-209 2-23 (305)
361 TIGR00231 small_GTP small GTP- 93.8 0.049 1.1E-06 45.3 2.9 23 189-211 3-25 (161)
362 PRK14974 cell division protein 93.8 0.058 1.3E-06 51.8 3.7 24 186-209 139-162 (336)
363 TIGR00455 apsK adenylylsulfate 93.8 0.062 1.3E-06 47.0 3.6 25 186-210 17-41 (184)
364 PF00406 ADK: Adenylate kinase 93.8 0.042 9.1E-07 46.3 2.4 19 192-210 1-19 (151)
365 PRK08181 transposase; Validate 93.8 0.038 8.3E-07 51.4 2.3 36 188-225 107-142 (269)
366 PRK02496 adk adenylate kinase; 93.8 0.048 1E-06 47.7 2.9 21 189-209 3-23 (184)
367 cd02040 NifH NifH gene encodes 93.8 0.047 1E-06 50.8 3.0 22 188-209 2-23 (270)
368 PRK00698 tmk thymidylate kinas 93.8 0.054 1.2E-06 48.1 3.2 23 188-210 4-26 (205)
369 cd03222 ABC_RNaseL_inhibitor T 93.8 0.052 1.1E-06 47.2 3.0 22 188-209 26-47 (177)
370 COG1136 SalX ABC-type antimicr 93.8 0.052 1.1E-06 48.8 3.1 22 188-209 32-53 (226)
371 PLN00020 ribulose bisphosphate 93.8 0.058 1.3E-06 51.9 3.5 27 185-211 146-172 (413)
372 smart00072 GuKc Guanylate kina 93.8 0.065 1.4E-06 46.9 3.7 23 188-210 3-25 (184)
373 PRK09183 transposase/IS protei 93.8 0.051 1.1E-06 50.4 3.1 23 188-210 103-125 (259)
374 TIGR00750 lao LAO/AO transport 93.8 0.094 2E-06 49.8 5.0 26 185-210 32-57 (300)
375 PRK13232 nifH nitrogenase redu 93.8 0.049 1.1E-06 50.9 3.0 22 188-209 2-23 (273)
376 cd03265 ABC_DrrA DrrA is the A 93.8 0.076 1.7E-06 47.9 4.2 33 188-223 27-59 (220)
377 cd01864 Rab19 Rab19 subfamily. 93.8 0.052 1.1E-06 46.3 2.9 23 188-210 4-26 (165)
378 PF00071 Ras: Ras family; Int 93.8 0.053 1.2E-06 45.9 3.0 22 190-211 2-23 (162)
379 PLN03186 DNA repair protein RA 93.8 0.086 1.9E-06 50.8 4.7 57 186-243 122-182 (342)
380 TIGR00959 ffh signal recogniti 93.8 0.21 4.6E-06 49.6 7.5 24 186-209 98-121 (428)
381 cd04136 Rap_like Rap-like subf 93.8 0.053 1.1E-06 45.9 2.9 22 189-210 3-24 (163)
382 COG1763 MobB Molybdopterin-gua 93.8 0.049 1.1E-06 46.3 2.6 24 187-210 2-25 (161)
383 PF01695 IstB_IS21: IstB-like 93.7 0.042 9.1E-07 47.8 2.3 36 188-225 48-83 (178)
384 PF00158 Sigma54_activat: Sigm 93.7 0.072 1.6E-06 45.9 3.7 45 162-210 1-45 (168)
385 cd03261 ABC_Org_Solvent_Resist 93.7 0.053 1.1E-06 49.5 3.0 23 188-210 27-49 (235)
386 cd00876 Ras Ras family. The R 93.7 0.053 1.1E-06 45.6 2.8 21 190-210 2-22 (160)
387 cd00154 Rab Rab family. Rab G 93.7 0.055 1.2E-06 45.2 2.9 22 190-211 3-24 (159)
388 cd04124 RabL2 RabL2 subfamily. 93.7 0.054 1.2E-06 46.0 2.9 21 190-210 3-23 (161)
389 PRK12608 transcription termina 93.7 0.15 3.2E-06 49.4 6.1 72 168-245 119-192 (380)
390 PTZ00494 tuzin-like protein; P 93.7 0.27 5.9E-06 48.3 7.8 80 156-246 367-446 (664)
391 cd04159 Arl10_like Arl10-like 93.7 0.048 1E-06 45.6 2.6 21 190-210 2-22 (159)
392 cd03238 ABC_UvrA The excision 93.7 0.054 1.2E-06 47.0 2.9 22 188-209 22-43 (176)
393 PRK14528 adenylate kinase; Pro 93.7 0.058 1.3E-06 47.3 3.1 23 188-210 2-24 (186)
394 cd03269 ABC_putative_ATPase Th 93.6 0.057 1.2E-06 48.3 3.1 33 188-223 27-59 (210)
395 TIGR02528 EutP ethanolamine ut 93.6 0.053 1.1E-06 44.9 2.7 22 189-210 2-23 (142)
396 PRK06526 transposase; Provisio 93.6 0.051 1.1E-06 50.2 2.8 23 188-210 99-121 (254)
397 PRK00279 adk adenylate kinase; 93.6 0.054 1.2E-06 48.7 2.9 22 189-210 2-23 (215)
398 TIGR00017 cmk cytidylate kinas 93.6 0.059 1.3E-06 48.5 3.1 23 188-210 3-25 (217)
399 cd03293 ABC_NrtD_SsuB_transpor 93.6 0.056 1.2E-06 48.7 3.0 23 188-210 31-53 (220)
400 cd03256 ABC_PhnC_transporter A 93.6 0.056 1.2E-06 49.5 3.0 23 188-210 28-50 (241)
401 TIGR02315 ABC_phnC phosphonate 93.6 0.056 1.2E-06 49.5 3.0 23 188-210 29-51 (243)
402 cd03263 ABC_subfamily_A The AB 93.6 0.057 1.2E-06 48.6 3.0 23 188-210 29-51 (220)
403 PF01078 Mg_chelatase: Magnesi 93.6 0.087 1.9E-06 46.6 4.0 42 160-209 3-44 (206)
404 cd00879 Sar1 Sar1 subfamily. 93.6 0.056 1.2E-06 47.3 2.9 24 187-210 19-42 (190)
405 cd01860 Rab5_related Rab5-rela 93.6 0.059 1.3E-06 45.6 2.9 23 189-211 3-25 (163)
406 PRK13541 cytochrome c biogenes 93.6 0.06 1.3E-06 47.6 3.0 23 188-210 27-49 (195)
407 cd03259 ABC_Carb_Solutes_like 93.6 0.059 1.3E-06 48.3 3.0 22 188-209 27-48 (213)
408 PRK10867 signal recognition pa 93.6 0.24 5.2E-06 49.3 7.5 25 185-209 98-122 (433)
409 PRK09354 recA recombinase A; P 93.6 0.093 2E-06 50.5 4.5 44 186-231 59-102 (349)
410 cd01878 HflX HflX subfamily. 93.6 0.064 1.4E-06 47.6 3.2 26 186-211 40-65 (204)
411 CHL00195 ycf46 Ycf46; Provisio 93.5 0.32 6.8E-06 49.3 8.4 51 160-210 228-282 (489)
412 cd03235 ABC_Metallic_Cations A 93.5 0.056 1.2E-06 48.4 2.8 23 188-210 26-48 (213)
413 KOG0727 26S proteasome regulat 93.5 0.064 1.4E-06 48.4 3.0 52 160-211 155-213 (408)
414 PRK05973 replicative DNA helic 93.5 0.15 3.4E-06 46.3 5.6 49 186-238 63-111 (237)
415 cd03292 ABC_FtsE_transporter F 93.5 0.061 1.3E-06 48.2 3.0 23 188-210 28-50 (214)
416 cd03264 ABC_drug_resistance_li 93.5 0.056 1.2E-06 48.4 2.8 21 189-209 27-47 (211)
417 cd03260 ABC_PstB_phosphate_tra 93.5 0.062 1.3E-06 48.7 3.1 22 188-209 27-48 (227)
418 TIGR03877 thermo_KaiC_1 KaiC d 93.5 0.16 3.5E-06 46.4 5.8 48 186-237 20-67 (237)
419 cd01673 dNK Deoxyribonucleosid 93.5 0.056 1.2E-06 47.6 2.7 22 189-210 1-22 (193)
420 PRK07952 DNA replication prote 93.5 0.065 1.4E-06 49.1 3.2 37 187-225 99-135 (244)
421 TIGR01243 CDC48 AAA family ATP 93.5 0.065 1.4E-06 57.5 3.6 51 160-210 178-235 (733)
422 PRK10584 putative ABC transpor 93.5 0.063 1.4E-06 48.7 3.1 22 188-209 37-58 (228)
423 cd03296 ABC_CysA_sulfate_impor 93.5 0.061 1.3E-06 49.2 3.0 23 188-210 29-51 (239)
424 TIGR03864 PQQ_ABC_ATP ABC tran 93.4 0.062 1.3E-06 49.0 3.0 23 188-210 28-50 (236)
425 PRK13540 cytochrome c biogenes 93.4 0.096 2.1E-06 46.4 4.2 33 188-223 28-60 (200)
426 PRK12338 hypothetical protein; 93.4 0.071 1.5E-06 50.5 3.4 24 187-210 4-27 (319)
427 cd03266 ABC_NatA_sodium_export 93.4 0.093 2E-06 47.2 4.2 33 188-223 32-64 (218)
428 PF07724 AAA_2: AAA domain (Cd 93.4 0.082 1.8E-06 45.7 3.6 24 186-209 2-25 (171)
429 cd03226 ABC_cobalt_CbiO_domain 93.4 0.063 1.4E-06 47.8 3.0 23 188-210 27-49 (205)
430 cd04123 Rab21 Rab21 subfamily. 93.4 0.066 1.4E-06 45.1 3.0 22 189-210 2-23 (162)
431 cd02029 PRK_like Phosphoribulo 93.4 0.057 1.2E-06 49.7 2.7 21 189-209 1-21 (277)
432 PRK12727 flagellar biosynthesi 93.4 0.11 2.3E-06 52.6 4.8 24 186-209 349-372 (559)
433 cd03224 ABC_TM1139_LivF_branch 93.4 0.066 1.4E-06 48.3 3.1 23 188-210 27-49 (222)
434 cd01134 V_A-ATPase_A V/A-type 93.4 0.37 8.1E-06 46.2 8.1 77 188-270 158-235 (369)
435 cd04177 RSR1 RSR1 subgroup. R 93.4 0.067 1.4E-06 45.8 3.0 23 189-211 3-25 (168)
436 PLN02924 thymidylate kinase 93.4 0.24 5.1E-06 44.7 6.6 27 186-212 15-41 (220)
437 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 93.4 0.065 1.4E-06 45.6 2.9 22 189-210 4-25 (166)
438 PRK14490 putative bifunctional 93.4 0.1 2.2E-06 51.1 4.6 25 186-210 4-28 (369)
439 PRK14730 coaE dephospho-CoA ki 93.4 0.07 1.5E-06 47.2 3.1 22 188-209 2-23 (195)
440 TIGR02211 LolD_lipo_ex lipopro 93.4 0.066 1.4E-06 48.3 3.0 33 188-223 32-64 (221)
441 cd03230 ABC_DR_subfamily_A Thi 93.4 0.1 2.3E-06 45.1 4.2 23 188-210 27-49 (173)
442 cd03218 ABC_YhbG The ABC trans 93.4 0.099 2.1E-06 47.5 4.2 23 188-210 27-49 (232)
443 cd00878 Arf_Arl Arf (ADP-ribos 93.4 0.064 1.4E-06 45.2 2.8 22 190-211 2-23 (158)
444 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.3 0.1 2.2E-06 43.6 4.0 23 188-210 27-49 (144)
445 PRK06835 DNA replication prote 93.3 0.057 1.2E-06 51.8 2.6 37 188-226 184-220 (329)
446 cd00157 Rho Rho (Ras homology) 93.3 0.068 1.5E-06 45.6 2.9 23 189-211 2-24 (171)
447 PRK15177 Vi polysaccharide exp 93.3 0.067 1.5E-06 48.0 3.0 23 188-210 14-36 (213)
448 COG4608 AppF ABC-type oligopep 93.3 0.066 1.4E-06 49.1 2.9 23 187-209 39-61 (268)
449 PRK13233 nifH nitrogenase redu 93.3 0.067 1.5E-06 50.1 3.1 22 188-209 3-24 (275)
450 cd03237 ABC_RNaseL_inhibitor_d 93.3 0.069 1.5E-06 49.1 3.0 23 188-210 26-48 (246)
451 COG4619 ABC-type uncharacteriz 93.3 0.076 1.6E-06 45.1 2.9 22 188-209 30-51 (223)
452 cd03258 ABC_MetN_methionine_tr 93.3 0.07 1.5E-06 48.6 3.0 23 188-210 32-54 (233)
453 TIGR03608 L_ocin_972_ABC putat 93.3 0.071 1.5E-06 47.4 3.0 23 188-210 25-47 (206)
454 PRK11629 lolD lipoprotein tran 93.3 0.07 1.5E-06 48.6 3.1 23 188-210 36-58 (233)
455 PRK10247 putative ABC transpor 93.3 0.071 1.5E-06 48.3 3.1 23 188-210 34-56 (225)
456 KOG0735 AAA+-type ATPase [Post 93.2 0.32 6.9E-06 50.4 7.8 40 187-227 431-470 (952)
457 cd04101 RabL4 RabL4 (Rab-like4 93.2 0.071 1.5E-06 45.2 2.9 21 189-209 2-22 (164)
458 PRK11248 tauB taurine transpor 93.2 0.071 1.5E-06 49.4 3.0 23 188-210 28-50 (255)
459 PRK13235 nifH nitrogenase redu 93.2 0.069 1.5E-06 50.0 3.0 22 188-209 2-23 (274)
460 PHA02575 1 deoxynucleoside mon 93.2 0.071 1.5E-06 47.7 2.9 21 189-209 2-22 (227)
461 PRK13538 cytochrome c biogenes 93.2 0.073 1.6E-06 47.4 3.0 23 188-210 28-50 (204)
462 PRK05342 clpX ATP-dependent pr 93.2 0.13 2.7E-06 51.0 4.9 51 159-209 70-130 (412)
463 COG4088 Predicted nucleotide k 93.2 0.068 1.5E-06 46.8 2.6 22 188-209 2-23 (261)
464 cd04160 Arfrp1 Arfrp1 subfamil 93.2 0.069 1.5E-06 45.5 2.8 20 190-209 2-21 (167)
465 cd01876 YihA_EngB The YihA (En 93.2 0.067 1.5E-06 45.2 2.7 20 190-209 2-21 (170)
466 TIGR01277 thiQ thiamine ABC tr 93.2 0.11 2.4E-06 46.6 4.1 33 188-223 25-57 (213)
467 cd03301 ABC_MalK_N The N-termi 93.2 0.074 1.6E-06 47.6 3.1 23 188-210 27-49 (213)
468 cd02034 CooC The accessory pro 93.2 0.08 1.7E-06 42.5 2.9 21 190-210 2-22 (116)
469 PRK05537 bifunctional sulfate 93.2 0.12 2.7E-06 53.4 5.0 47 160-210 369-415 (568)
470 PRK05416 glmZ(sRNA)-inactivati 93.2 0.091 2E-06 49.4 3.7 23 186-208 5-27 (288)
471 TIGR01184 ntrCD nitrate transp 93.2 0.074 1.6E-06 48.4 3.1 23 188-210 12-34 (230)
472 cd03257 ABC_NikE_OppD_transpor 93.2 0.072 1.6E-06 48.2 3.0 23 188-210 32-54 (228)
473 cd04137 RheB Rheb (Ras Homolog 93.2 0.081 1.8E-06 45.8 3.2 22 189-210 3-24 (180)
474 PRK14250 phosphate ABC transpo 93.2 0.11 2.4E-06 47.6 4.2 23 188-210 30-52 (241)
475 cd04140 ARHI_like ARHI subfami 93.2 0.075 1.6E-06 45.3 2.9 22 189-210 3-24 (165)
476 cd01898 Obg Obg subfamily. Th 93.1 0.07 1.5E-06 45.5 2.7 20 190-209 3-22 (170)
477 PRK06921 hypothetical protein; 93.1 0.11 2.4E-06 48.4 4.1 37 187-225 117-154 (266)
478 cd03232 ABC_PDR_domain2 The pl 93.1 0.078 1.7E-06 46.7 3.0 23 188-210 34-56 (192)
479 KOG2035 Replication factor C, 93.1 2.3 5.1E-05 39.3 12.3 176 162-347 15-257 (351)
480 cd04146 RERG_RasL11_like RERG/ 93.1 0.079 1.7E-06 45.1 2.9 21 190-210 2-22 (165)
481 TIGR00382 clpX endopeptidase C 93.1 0.15 3.2E-06 50.4 5.1 50 159-209 76-138 (413)
482 cd04115 Rab33B_Rab33A Rab33B/R 93.1 0.078 1.7E-06 45.5 2.9 23 188-210 3-25 (170)
483 TIGR02639 ClpA ATP-dependent C 93.1 0.11 2.5E-06 55.6 4.8 51 160-210 454-507 (731)
484 TIGR00101 ureG urease accessor 93.1 0.09 1.9E-06 46.7 3.3 23 188-210 2-24 (199)
485 PRK12726 flagellar biosynthesi 93.1 0.1 2.3E-06 50.6 4.0 25 186-210 205-229 (407)
486 PRK13231 nitrogenase reductase 93.1 0.079 1.7E-06 49.2 3.1 23 188-210 3-25 (264)
487 TIGR03878 thermo_KaiC_2 KaiC d 93.1 0.12 2.5E-06 48.0 4.2 41 186-228 35-75 (259)
488 cd04103 Centaurin_gamma Centau 93.1 0.08 1.7E-06 45.0 2.9 20 190-209 3-22 (158)
489 TIGR02324 CP_lyasePhnL phospho 93.1 0.12 2.7E-06 46.6 4.4 34 188-224 35-68 (224)
490 TIGR01618 phage_P_loop phage n 93.0 0.076 1.6E-06 47.7 2.8 23 187-209 12-34 (220)
491 cd04162 Arl9_Arfrp2_like Arl9/ 93.0 0.076 1.7E-06 45.4 2.8 21 190-210 2-22 (164)
492 cd03219 ABC_Mj1267_LivG_branch 93.0 0.073 1.6E-06 48.5 2.8 22 188-209 27-48 (236)
493 PRK13407 bchI magnesium chelat 93.0 0.092 2E-06 50.4 3.6 46 158-209 6-51 (334)
494 PRK11124 artP arginine transpo 93.0 0.079 1.7E-06 48.5 3.0 23 188-210 29-51 (242)
495 cd04171 SelB SelB subfamily. 93.0 0.08 1.7E-06 44.7 2.9 21 189-209 2-22 (164)
496 cd03246 ABCC_Protease_Secretio 93.0 0.086 1.9E-06 45.6 3.1 23 188-210 29-51 (173)
497 PRK13539 cytochrome c biogenes 93.0 0.081 1.8E-06 47.2 3.0 23 188-210 29-51 (207)
498 PRK08533 flagellar accessory p 93.0 0.24 5.3E-06 45.0 6.2 52 187-243 24-75 (230)
499 TIGR01281 DPOR_bchL light-inde 93.0 0.078 1.7E-06 49.4 3.0 21 189-209 2-22 (268)
500 TIGR02770 nickel_nikD nickel i 93.0 0.079 1.7E-06 48.2 3.0 23 188-210 13-35 (230)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-57 Score=477.47 Aligned_cols=396 Identities=25% Similarity=0.409 Sum_probs=308.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHhhhhccccc----ccccc
Q 042891 8 SELLLKKLASKAILLFARQKQSQADLMKWKKTLVKINEVLDDADEKQNTDQSVKMWLGDLQNLAYDRNLMF----QGPAA 83 (423)
Q Consensus 8 v~~l~~kl~s~~~~e~~~~~~v~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~v~~Wl~~lr~~ayd~e~~~----~~~~~ 83 (423)
++..++|+.+++.+++....+.++.+..|+++|..++++++|++.++.....+..|...+++++|++|.+. .+...
T Consensus 5 ~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~ 84 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIE 84 (889)
T ss_pred EEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888889999999999999999999999999999998888999999999999999999220 11101
Q ss_pred ccc--c---ccccccccccccccCCCCcchhhHHHHHHHHHHHHHHHHHHHhchhcCccccCCCcc--ccccccCccccc
Q 042891 84 AQT--T---TTKFRKLIPSCCTNFSPRTMKFDHMMAAKIEDVTIRLQEIEKQKDLLDLKENSAGKS--RKVRQRLPTTSL 156 (423)
Q Consensus 84 ~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~rl~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 156 (423)
... . .....+.+ |+ ..+++..+..+..+..++..+......+.......... ..+....++.+.
T Consensus 85 ~~~~~~l~~~~~~~~~~--c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~ 155 (889)
T KOG4658|consen 85 RKANDLLSTRSVERQRL--CL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPI 155 (889)
T ss_pred HHHhHHhhhhHHHHHHH--hh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCC
Confidence 000 0 00011111 11 13455666666666666666666666665433211111 111122333443
Q ss_pred ccCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccc-cccCccceeeEEeCCcCcHHHHH
Q 042891 157 VNEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR-VHNHFDLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 157 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~ 235 (423)
.+... ||.+..++++.+.|.+++ ..+++|+||||+||||||++++|+.. ++.+|+.++||+||++|+..+++
T Consensus 156 ~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq 228 (889)
T KOG4658|consen 156 QSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQ 228 (889)
T ss_pred Ccccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHH
Confidence 44444 999999999999998754 38999999999999999999999988 99999999999999999999999
Q ss_pred HHHHHHhhcCCCC------------------------------CcCCCCc-----------eeeEeccCCHHHHhh-cCC
Q 042891 236 KSILKSIASDQLV------------------------------DDRDLNL-----------LQIVITTRNLCVVEK-TGT 273 (423)
Q Consensus 236 ~~il~~l~~~~~~------------------------------~~~~~~~-----------l~ilvTTR~~~v~~~-~~~ 273 (423)
.+|+..++..... +..+++. .+|++|||+..|+.. +++
T Consensus 229 ~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~ 308 (889)
T KOG4658|consen 229 QTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGV 308 (889)
T ss_pred HHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccC
Confidence 9999988763321 0111111 129999999999999 888
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHHHHcccccC--
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWEDVHNCKIWK-- 351 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~~~~~~~~~-- 351 (423)
...+++..|+++|||+||++.+|...... ++.++.+|++|+++|+|+|||++++|+.|+.|.+..+|+++.+...+.
T Consensus 309 ~~~~~v~~L~~~eaW~LF~~~v~~~~~~~-~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~ 387 (889)
T KOG4658|consen 309 DYPIEVECLTPEEAWDLFQKKVGPNTLGS-HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLA 387 (889)
T ss_pred CccccccccCccccHHHHHHhhccccccc-cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccccc
Confidence 88999999999999999999998764332 345999999999999999999999999999999999999999875443
Q ss_pred --CCc-------------cc---chHHHhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHHHHHhcC
Q 042891 352 --LSE-------------ED---LLKQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQELYSRS 413 (423)
Q Consensus 352 --~~~-------------~~---~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~eL~~r~ 413 (423)
++. +. ++|.||+|||+||+||+|+++.||.+||||||+.+..+..++++.|..|+.+|++||
T Consensus 388 ~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~ 467 (889)
T KOG4658|consen 388 ADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRAS 467 (889)
T ss_pred CCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHH
Confidence 211 11 799999999999999999999999999999999997777889999999999999999
Q ss_pred cccccCC
Q 042891 414 FFQLSSS 420 (423)
Q Consensus 414 l~q~~~~ 420 (423)
|++..+.
T Consensus 468 Ll~~~~~ 474 (889)
T KOG4658|consen 468 LLIEERD 474 (889)
T ss_pred HHhhccc
Confidence 9998763
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7e-39 Score=303.19 Aligned_cols=223 Identities=31% Similarity=0.570 Sum_probs=175.5
Q ss_pred ecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhhc
Q 042891 165 RDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIAS 244 (423)
Q Consensus 165 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 244 (423)
||.++++|.++|.... ++.++|+|+||||+||||||.+++++..++.+|+.++|++++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7889999999998642 578999999999999999999999987789999999999999999889999999999877
Q ss_pred CCCCC--cCCCC-----------------------------c-----------eeeEeccCCHHHHhhcCC-CCcccCCC
Q 042891 245 DQLVD--DRDLN-----------------------------L-----------LQIVITTRNLCVVEKTGT-LPAYPLKE 281 (423)
Q Consensus 245 ~~~~~--~~~~~-----------------------------~-----------l~ilvTTR~~~v~~~~~~-~~~~~l~~ 281 (423)
..... ..+.+ . .+||||||+..++..++. ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 63210 01100 0 019999999998877654 56899999
Q ss_pred CChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHHHHcccccCCCc----cc-
Q 042891 282 LSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWEDVHNCKIWKLSE----ED- 356 (423)
Q Consensus 282 L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~~~~~~~~~~~~----~~- 356 (423)
|+.++|++||++.++... ...++.+.+.+++|+++|+|+|||++++|++|+.+.+..+|..+++........ ..
T Consensus 157 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp --HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997654 222345667899999999999999999999997766789999988764433211 01
Q ss_pred --------------chHHHhhhhccCCCCCccCHHHHHHHHHHcCcccCC
Q 042891 357 --------------LLKQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHE 392 (423)
Q Consensus 357 --------------~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~ 392 (423)
++|+||+|||+||+++.|+++.|+++|+|||||.+.
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 799999999999999999999999999999999863
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=6e-29 Score=274.07 Aligned_cols=239 Identities=21% Similarity=0.308 Sum_probs=178.8
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe---CCc------
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV---SED------ 228 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~------ 228 (423)
+...+|||+..++++..+|... .+++++|+||||||+||||||+.+|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 4567999999999999988543 34789999999999999999999999 57788988887642 111
Q ss_pred -----Cc-HHHHHHHHHHHhhcCC----------------------CCCcCC---CC-----------ceeeEeccCCHH
Q 042891 229 -----FD-IIWVTKSILKSIASDQ----------------------LVDDRD---LN-----------LLQIVITTRNLC 266 (423)
Q Consensus 229 -----~~-~~~~~~~il~~l~~~~----------------------~~~~~~---~~-----------~l~ilvTTR~~~ 266 (423)
++ ...++..++..+.... .++.++ ++ ..+||||||+..
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~ 335 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKH 335 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHH
Confidence 11 1223334433322110 001111 01 122999999999
Q ss_pred HHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHHHHc
Q 042891 267 VVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWEDVHN 346 (423)
Q Consensus 267 v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~~~~ 346 (423)
++..++..++|+++.|+.++||+||+++||+... +..++.+++++|+++|+|+|||++++|++|+.+ +..+|+.++.
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~ 412 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLP 412 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9988878889999999999999999999997643 235788999999999999999999999999987 7899999987
Q ss_pred ccccCC----------Cccc----chHHHhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHHHHHhc
Q 042891 347 CKIWKL----------SEED----LLKQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQELYSR 412 (423)
Q Consensus 347 ~~~~~~----------~~~~----~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~eL~~r 412 (423)
.....+ +++. ..|.||+|||.||.++.++ .+..|+|.+.... +.-++.|+++
T Consensus 413 ~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~~l~~L~~k 478 (1153)
T PLN03210 413 RLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NIGLKNLVDK 478 (1153)
T ss_pred HHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hhChHHHHhc
Confidence 644322 1111 4799999999999986553 5888999876542 1238889999
Q ss_pred CcccccC
Q 042891 413 SFFQLSS 419 (423)
Q Consensus 413 ~l~q~~~ 419 (423)
||++...
T Consensus 479 sLi~~~~ 485 (1153)
T PLN03210 479 SLIHVRE 485 (1153)
T ss_pred CCEEEcC
Confidence 9998754
No 4
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.85 E-value=5.3e-08 Score=93.79 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=91.3
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc--------------------
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-------------------- 218 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-------------------- 218 (423)
-.+|+|++..++.+..++..... .......+.++|++|+|||+||+.+.+... ..+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~~~~~~~~~~~~~~l~~~l~~l 100 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNIRITSGPALEKPGDLAAILTNL 100 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCeEEEecccccChHHHHHHHHhc
Confidence 45799999999999888754211 123456788999999999999999998532 1110
Q ss_pred ---ceeeEEeCCcC--cHHHHHHHHHHHhhcCC-CCCcC---C----CCcee-eEeccCCHHHHhhcC--CCCcccCCCC
Q 042891 219 ---LKSWTCVSEDF--DIIWVTKSILKSIASDQ-LVDDR---D----LNLLQ-IVITTRNLCVVEKTG--TLPAYPLKEL 282 (423)
Q Consensus 219 ---~~~wv~vs~~~--~~~~~~~~il~~l~~~~-~~~~~---~----~~~l~-ilvTTR~~~v~~~~~--~~~~~~l~~L 282 (423)
.+++++--+.. +..+.+...++...... ..+.. . +.... |..||+...+...+. ....+.++++
T Consensus 101 ~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~ 180 (328)
T PRK00080 101 EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFY 180 (328)
T ss_pred ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCC
Confidence 01111100000 11112222222110000 00000 0 00011 555666443322211 1236889999
Q ss_pred ChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhh
Q 042891 283 SNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGG 330 (423)
Q Consensus 283 ~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~ 330 (423)
+.++..+++...+....-.. -.+....|++.|+|.|-.+..+..
T Consensus 181 ~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 181 TVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred CHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHH
Confidence 99999999998875432221 236789999999999965555444
No 5
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.84 E-value=6.4e-08 Score=92.33 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=123.0
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccc--------------------
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDL-------------------- 219 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-------------------- 219 (423)
.+|+|++..++.|..++..... .......+.++|++|+|||+||+.+.+... ..|..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~ 80 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNLKITSGPALEKPGDLAAILTNLE 80 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCEEEeccchhcCchhHHHHHHhcc
Confidence 4699999999999998853211 123455688999999999999999998432 22210
Q ss_pred ---eeeEEeCCcC--cHHHHHHHHHHHhhcCCC-C---CcCC----CC-ceeeEeccCCHHHHhhcC--CCCcccCCCCC
Q 042891 220 ---KSWTCVSEDF--DIIWVTKSILKSIASDQL-V---DDRD----LN-LLQIVITTRNLCVVEKTG--TLPAYPLKELS 283 (423)
Q Consensus 220 ---~~wv~vs~~~--~~~~~~~~il~~l~~~~~-~---~~~~----~~-~l~ilvTTR~~~v~~~~~--~~~~~~l~~L~ 283 (423)
+++++--+.. +..+.+.++++.....-. . .... +. ..-|..||+...+...+. ....+.+++++
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~ 160 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYT 160 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCC
Confidence 0011000000 011111111111110000 0 0000 00 011555676544332211 12357899999
Q ss_pred hhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhh------c-C-CChhHHHHHHcccccCCCcc
Q 042891 284 NNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLR------V-K-YDPNDWEDVHNCKIWKLSEE 355 (423)
Q Consensus 284 ~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~------~-~-~~~~~W~~~~~~~~~~~~~~ 355 (423)
.++..+++.+.+...... --.+....|++.|+|.|-.+..++..+. . . .+.+....++..........
T Consensus 161 ~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l 236 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDELGL 236 (305)
T ss_pred HHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCC
Confidence 999999999887532221 1245678899999999976655544331 1 1 23444444444321111111
Q ss_pred c-chHH-HhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHH-HHHhcCcccccCCCC
Q 042891 356 D-LLKQ-CIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQ-ELYSRSFFQLSSSNK 422 (423)
Q Consensus 356 ~-~lk~-cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~-eL~~r~l~q~~~~~~ 422 (423)
. +-+. .......|+.+ .+..+.+-... .. ....++..++ .|++.+|++..+.++
T Consensus 237 ~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~------~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 237 DEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GE------DADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred CHHHHHHHHHHHHHhCCC-cccHHHHHHHh------CC------CcchHHHhhhHHHHHcCCcccCCchh
Confidence 1 1111 12233445433 33333332221 11 1234566677 699999998666543
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.68 E-value=5.9e-08 Score=88.34 Aligned_cols=44 Identities=39% Similarity=0.502 Sum_probs=35.8
Q ss_pred eeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 162 VYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 162 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
|+||+.++++|.+++..+ ....+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 789999999999998643 35689999999999999999998843
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.63 E-value=3.3e-07 Score=90.71 Aligned_cols=253 Identities=13% Similarity=0.077 Sum_probs=135.9
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHH
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
.+..++||++++++|...|...- .+.....+.|+|++|+|||++++.++++.......-..++++.....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 44679999999999999984421 1223456789999999999999999985432221223455555444455555555
Q ss_pred HHHHhhcCC-----------------------------CCCcCCC------C---------------ceeeEeccCCHHH
Q 042891 238 ILKSIASDQ-----------------------------LVDDRDL------N---------------LLQIVITTRNLCV 267 (423)
Q Consensus 238 il~~l~~~~-----------------------------~~~~~~~------~---------------~l~ilvTTR~~~v 267 (423)
|+.++.... .++.+.+ + .+.+|.++....+
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch
Confidence 555553310 0000000 0 0114555544433
Q ss_pred HhhcC-------CCCcccCCCCChhhHHHHHHHhhcCC--CCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhh--h--c
Q 042891 268 VEKTG-------TLPAYPLKELSNNDCLSVFTQHSLGE--KDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLL--R--V 334 (423)
Q Consensus 268 ~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L--~--~ 334 (423)
..... ....+.+++++.++..+++..++-.. .....+..++.+++......|..+.|+.++-... . .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 32221 12357899999999999998876321 1112222333444444444566787777764322 1 1
Q ss_pred ---CCChhHHHHHHccc--------ccCCCcccchHHHhhhhc--cCCC-CCccCHHHHHHH--HHHcCcccCCCCCCcH
Q 042891 335 ---KYDPNDWEDVHNCK--------IWKLSEEDLLKQCIAYCS--LLPK-DYEFQQEEIILL--WMVEGFLNHESDKKQM 398 (423)
Q Consensus 335 ---~~~~~~W~~~~~~~--------~~~~~~~~~lk~cfly~s--~FP~-~~~i~~~~Li~~--Wiaeg~i~~~~~~~~~ 398 (423)
..+.+....+.+.. ...++ ..++.|++.- .... ...+....+... .+++.+=..+. +.
T Consensus 266 ~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~---~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~---~~ 339 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEIVHLSEVLRTLP---LHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR---TH 339 (394)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC---cH
Confidence 13556666555432 11222 3444555432 1221 134666666633 34432211111 12
Q ss_pred HHHHHHHHHHHHhcCcccccC
Q 042891 399 ENLCRKYFQELYSRSFFQLSS 419 (423)
Q Consensus 399 e~~~~~~~~eL~~r~l~q~~~ 419 (423)
.. -..|+++|...|++....
T Consensus 340 ~~-~~~~l~~L~~~glI~~~~ 359 (394)
T PRK00411 340 TR-FYEYINKLDMLGIINTRY 359 (394)
T ss_pred HH-HHHHHHHHHhcCCeEEEE
Confidence 23 466999999999998653
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=2.3e-06 Score=93.92 Aligned_cols=199 Identities=13% Similarity=0.147 Sum_probs=117.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc-CcHHHHHHHHHHHhhcCCCC---Cc-----------
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED-FDIIWVTKSILKSIASDQLV---DD----------- 250 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~~---~~----------- 250 (423)
..+++.|+|++|.||||++.+..+. ++.++|+++... -++..+...++..+...... ..
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 5789999999999999999998762 236899998643 35555656665555311000 00
Q ss_pred -----------------------CCCC--------------------ceeeEeccCCHHHH---hhcCCCCcccCC----
Q 042891 251 -----------------------RDLN--------------------LLQIVITTRNLCVV---EKTGTLPAYPLK---- 280 (423)
Q Consensus 251 -----------------------~~~~--------------------~l~ilvTTR~~~v~---~~~~~~~~~~l~---- 280 (423)
++.. .+.+|||||..... ..........+.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 0000 00177899974211 110011234444
Q ss_pred CCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCC-hh--HH----------HHHH-c
Q 042891 281 ELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYD-PN--DW----------EDVH-N 346 (423)
Q Consensus 281 ~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~-~~--~W----------~~~~-~ 346 (423)
+|+.+|+.+||........ -.+...+|.+.|+|.|+++..++..++.... .. .| .+.+ +
T Consensus 185 ~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 257 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVE 257 (903)
T ss_pred CCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHH
Confidence 8999999999987642211 1355789999999999999998877754321 11 11 1111 1
Q ss_pred ccccCCCcccchHHHhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHHHHHhcCccc
Q 042891 347 CKIWKLSEEDLLKQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQELYSRSFFQ 416 (423)
Q Consensus 347 ~~~~~~~~~~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~eL~~r~l~q 416 (423)
.....++. ..+..++..|+++. ++.+-+- .+... +-+...+++|..+++|.
T Consensus 258 ~v~~~l~~--~~~~~l~~~a~~~~---~~~~l~~------~l~~~--------~~~~~~L~~l~~~~l~~ 308 (903)
T PRK04841 258 EVLDNVDL--ETRHFLLRCSVLRS---MNDALIV------RVTGE--------ENGQMRLEELERQGLFI 308 (903)
T ss_pred HHHhcCCH--HHHHHHHHhccccc---CCHHHHH------HHcCC--------CcHHHHHHHHHHCCCee
Confidence 11122222 78899999999873 4433222 22211 11366788888888864
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.51 E-value=4.1e-06 Score=82.00 Aligned_cols=252 Identities=12% Similarity=0.081 Sum_probs=132.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc-cCc---cceeeEEeCCcCcHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH-NHF---DLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~ 235 (423)
..++||+.++++|..+|...- .+.....+.|+|++|+|||++++.+++...-. ... -..+|+......+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 479999999999999986421 12234578999999999999999999843210 111 134566655544555566
Q ss_pred HHHHHHhh---cC----------------------C------CCCcCCC----------------------CceeeEecc
Q 042891 236 KSILKSIA---SD----------------------Q------LVDDRDL----------------------NLLQIVITT 262 (423)
Q Consensus 236 ~~il~~l~---~~----------------------~------~~~~~~~----------------------~~l~ilvTT 262 (423)
..|+.++. .. . .++.+.+ ..+.+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 66665552 10 0 0000000 001134444
Q ss_pred CCHHHHhhcC-------CCCcccCCCCChhhHHHHHHHhhcC-CCCCCCCccHHHHHHHHHHHcCCchh-hhHhhhhhh-
Q 042891 263 RNLCVVEKTG-------TLPAYPLKELSNNDCLSVFTQHSLG-EKDFSTHPSLKEIGEKIVKKCNGLPL-VAKSLGGLL- 332 (423)
Q Consensus 263 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~~g~~L- 332 (423)
........+. ....+.+++.+.++..+++..++-. .....-+++..+...+++..+.|.|- |+.++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3333222111 1235789999999999999887631 11111223444455667777778874 333322111
Q ss_pred ---hc---CCChhHHHHHHccc--------ccCCCcccchHHHhhhhcc---CCCCCccCHHHHHHHHH--HcCcccCCC
Q 042891 333 ---RV---KYDPNDWEDVHNCK--------IWKLSEEDLLKQCIAYCSL---LPKDYEFQQEEIILLWM--VEGFLNHES 393 (423)
Q Consensus 333 ---~~---~~~~~~W~~~~~~~--------~~~~~~~~~lk~cfly~s~---FP~~~~i~~~~Li~~Wi--aeg~i~~~~ 393 (423)
.. ..+.+....+.+.. ...++. + +..+++.-. --.+-.+...++...+- ++.+ .. .
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~--~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~-~ 327 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPT--H-SKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI-GV-D 327 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCH--H-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc-CC-C
Confidence 11 13445555443322 112222 2 222222111 11344577777777442 2221 11 1
Q ss_pred CCCcHHHHHHHHHHHHHhcCcccccCC
Q 042891 394 DKKQMENLCRKYFQELYSRSFFQLSSS 420 (423)
Q Consensus 394 ~~~~~e~~~~~~~~eL~~r~l~q~~~~ 420 (423)
...+..-..|+++|...|++.-...
T Consensus 328 --~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 328 --PLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred --CCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 1124556789999999999987543
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.50 E-value=2.6e-06 Score=79.64 Aligned_cols=142 Identities=15% Similarity=0.133 Sum_probs=83.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhhcCCCC------------------
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIASDQLV------------------ 248 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~------------------ 248 (423)
..++.|+|++|+|||||++.+++.... ..+ ..+|+.. ...+..+++..|+..++.+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~~~-~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKLVN-TRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeeeeC-CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458999999999999999999985431 111 1223322 2345556666666555432110
Q ss_pred -----------CcCCC-----Cc--------------eeeEeccCCHHHHhhcCC----------CCcccCCCCChhhHH
Q 042891 249 -----------DDRDL-----NL--------------LQIVITTRNLCVVEKTGT----------LPAYPLKELSNNDCL 288 (423)
Q Consensus 249 -----------~~~~~-----~~--------------l~ilvTTR~~~v~~~~~~----------~~~~~l~~L~~~~~~ 288 (423)
+...+ +. +.|++|... ........ ...+.+++|+.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 00000 00 013444432 22222111 235789999999999
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhh
Q 042891 289 SVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLL 332 (423)
Q Consensus 289 ~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L 332 (423)
+++...+..........-..+..+.|++.|+|.|..+..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99887753222111111234788999999999999999998877
No 11
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=1.2e-06 Score=77.68 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=82.6
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHH
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 238 (423)
-.+|+|-+.-++.+.-++..... .++.+.-+-.||++|+||||||..+.+. ....|. +.+.+. .+-..-+..+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~-i~k~~dl~~i 95 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPA-IEKAGDLAAI 95 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC---SCHHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchh-hhhHHHHHHH
Confidence 45799988888776555432110 2346778999999999999999999994 444442 222111 1111122333
Q ss_pred HHHhhcCCC---CCcCCCCce---------------------------e--------eEeccCCHHHHhhcCCCC--ccc
Q 042891 239 LKSIASDQL---VDDRDLNLL---------------------------Q--------IVITTRNLCVVEKTGTLP--AYP 278 (423)
Q Consensus 239 l~~l~~~~~---~~~~~~~~l---------------------------~--------ilvTTR~~~v~~~~~~~~--~~~ 278 (423)
+.++..... ++...++.. + |=.|||...+...+...- ..+
T Consensus 96 l~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~ 175 (233)
T PF05496_consen 96 LTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLR 175 (233)
T ss_dssp HHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE
T ss_pred HHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecc
Confidence 444332210 111111110 0 556888655444333322 347
Q ss_pred CCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 279 LKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 279 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
++..+.+|-.++..+.+....- +--++.+.+|++.|.|-|--+.-+
T Consensus 176 l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 176 LEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp ----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 9999999999999877643221 233578999999999999654433
No 12
>PRK06893 DNA replication initiation factor; Validated
Probab=98.34 E-value=3.4e-06 Score=76.84 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=79.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhhcCC---CCCcCC-----------
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIASDQ---LVDDRD----------- 252 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~---~~~~~~----------- 252 (423)
.+.+.++|++|+|||+|++.+++.. ......+.|+++.... ....+++..+...+ .++...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l 113 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAI 113 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhhHHHHhhcccCCEEEEeChhhhcCChHHHHHH
Confidence 3578999999999999999999853 2223345666654211 11112222221110 000000
Q ss_pred ---CC-----ceeeE-eccCC---------HHHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHH
Q 042891 253 ---LN-----LLQIV-ITTRN---------LCVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKI 314 (423)
Q Consensus 253 ---~~-----~l~il-vTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I 314 (423)
++ ...+| +|+.. +.+...+.....+++++++.++.++++++.++...-.- -++...-|
T Consensus 114 ~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l----~~~v~~~L 189 (229)
T PRK06893 114 FDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL----SDEVANFL 189 (229)
T ss_pred HHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHH
Confidence 00 01144 44443 45666666667899999999999999999886433211 24677889
Q ss_pred HHHcCCchhhhHhhh
Q 042891 315 VKKCNGLPLVAKSLG 329 (423)
Q Consensus 315 ~~~c~GlPlai~~~g 329 (423)
++.+.|-.-.+..+-
T Consensus 190 ~~~~~~d~r~l~~~l 204 (229)
T PRK06893 190 LKRLDRDMHTLFDAL 204 (229)
T ss_pred HHhccCCHHHHHHHH
Confidence 999988665554433
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.24 E-value=2.8e-05 Score=77.26 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=82.4
Q ss_pred ceeeecchHHH---HHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHH
Q 042891 161 KVYGRDKEKEE---TVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 161 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
+++|.+..+.. |.+++.. .....+.++|++|+||||||+.+++.. ...| +.++.......-++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHHHHH
Confidence 57787766554 6666633 245578889999999999999998842 2222 222222211122233
Q ss_pred HHHHhhcC----C-----CCCcCCCCc--------------ee-eEeccCCHHH--Hhh-cCCCCcccCCCCChhhHHHH
Q 042891 238 ILKSIASD----Q-----LVDDRDLNL--------------LQ-IVITTRNLCV--VEK-TGTLPAYPLKELSNNDCLSV 290 (423)
Q Consensus 238 il~~l~~~----~-----~~~~~~~~~--------------l~-ilvTTR~~~v--~~~-~~~~~~~~l~~L~~~~~~~L 290 (423)
++...... . .++.+.+.. .. |..||.+... ... .+-...+.+.+|+.++.+.+
T Consensus 80 ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~l 159 (413)
T PRK13342 80 VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQL 159 (413)
T ss_pred HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHH
Confidence 33332110 0 001111110 00 2235554321 111 11125789999999999999
Q ss_pred HHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHh
Q 042891 291 FTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 327 (423)
Q Consensus 291 f~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 327 (423)
+.+......... .+-..+....|++.|+|.|..+..
T Consensus 160 L~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 160 LKRALEDKERGL-VELDDEALDALARLANGDARRALN 195 (413)
T ss_pred HHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHH
Confidence 988653211100 012245678889999998865543
No 14
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.17 E-value=2.8e-05 Score=74.02 Aligned_cols=149 Identities=25% Similarity=0.258 Sum_probs=82.0
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHH
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
...+++|-+..+.++++ .+.+...-.||++|+||||||+.+.. .....| ..+|...+-..-++.
T Consensus 28 GQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~ 91 (436)
T COG2256 28 GQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLRE 91 (436)
T ss_pred ChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHH
Confidence 34556666555555443 34678888999999999999999988 334444 333433332233333
Q ss_pred HHHHh----hc--CC---CCCcCCCCcee-------------eEe--ccCCHHH---HhhcCCCCcccCCCCChhhHHHH
Q 042891 238 ILKSI----AS--DQ---LVDDRDLNLLQ-------------IVI--TTRNLCV---VEKTGTLPAYPLKELSNNDCLSV 290 (423)
Q Consensus 238 il~~l----~~--~~---~~~~~~~~~l~-------------ilv--TTR~~~v---~~~~~~~~~~~l~~L~~~~~~~L 290 (423)
+++.. .. .. .++...++.-| |+| ||.|+.. ....+-..++.+++|+.++-.++
T Consensus 92 i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~ 171 (436)
T COG2256 92 IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKL 171 (436)
T ss_pred HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHH
Confidence 33332 11 00 11112222211 333 7777643 12223336899999999999999
Q ss_pred HHHhhcCCCCCCC--CccH-HHHHHHHHHHcCCch
Q 042891 291 FTQHSLGEKDFST--HPSL-KEIGEKIVKKCNGLP 322 (423)
Q Consensus 291 f~~~a~~~~~~~~--~~~l-~~~~~~I~~~c~GlP 322 (423)
+.+-+......-. ...+ ++...-++..++|--
T Consensus 172 l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 172 LKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 9883322111111 1112 345667788887743
No 15
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.14 E-value=2.1e-05 Score=71.39 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=83.2
Q ss_pred ecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhhc
Q 042891 165 RDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIAS 244 (423)
Q Consensus 165 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 244 (423)
....++.+.+++.. .....|.|+|++|+|||+||+.+++.. .......++++++.-.+. ...++..+..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~---~~~~~~~~~~ 90 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA---DPEVLEGLEQ 90 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh---HHHHHhhccc
Confidence 34456777776532 235688999999999999999998743 222333445544331110 0112221111
Q ss_pred CC---CCCcCCC-------------------CceeeEeccCCHH---------HHhhcCCCCcccCCCCChhhHHHHHHH
Q 042891 245 DQ---LVDDRDL-------------------NLLQIVITTRNLC---------VVEKTGTLPAYPLKELSNNDCLSVFTQ 293 (423)
Q Consensus 245 ~~---~~~~~~~-------------------~~l~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 293 (423)
.. .++.+.+ ....+|+||+... +...+.....+++++++.++...++..
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHH
Confidence 00 0000000 0012777776422 222333235789999999999999887
Q ss_pred hhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhh
Q 042891 294 HSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGG 330 (423)
Q Consensus 294 ~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~ 330 (423)
.+-...-. --.+..+.|++.+.|.|..+..+-.
T Consensus 171 ~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 171 RAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 54322111 1235667888889998877665543
No 16
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.09 E-value=5.7e-06 Score=75.90 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=46.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc--CcHHHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED--FDIIWVTKSILKSI 242 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l 242 (423)
-..++|+|++|+|||||++.+|++.... +|+.++|+.++.. +++.++++.+...+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~ 72 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEV 72 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEE
Confidence 4589999999999999999999976444 8999999997776 78999999884433
No 17
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=4.3e-06 Score=80.27 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=43.5
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcC--cHHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDF--DIIWVTKSIL 239 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~il 239 (423)
...+|+|++|+||||||+.||++.... +|++++||.+++.+ ++.++++.|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 478999999999999999999976444 89999999999887 6777777765
No 18
>PF05729 NACHT: NACHT domain
Probab=98.05 E-value=7.8e-06 Score=70.10 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=63.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccC----ccceeeEEeCCcCcHH---HHHHHHHHHhhc----------------
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNH----FDLKSWTCVSEDFDII---WVTKSILKSIAS---------------- 244 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~il~~l~~---------------- 244 (423)
+++.|+|.+|+||||+++.++.+...... +...+|.+.+...... .+...|..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999999875433222 4456676654432211 222222211110
Q ss_pred -------CCCCCcCC----------------------CCceeeEeccCCHHH---HhhcCCCCcccCCCCChhhHHHHHH
Q 042891 245 -------DQLVDDRD----------------------LNLLQIVITTRNLCV---VEKTGTLPAYPLKELSNNDCLSVFT 292 (423)
Q Consensus 245 -------~~~~~~~~----------------------~~~l~ilvTTR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~ 292 (423)
+..++... ....+++||+|.... .........+.+.+|++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 00000000 111229999998766 3333444579999999999999997
Q ss_pred Hh
Q 042891 293 QH 294 (423)
Q Consensus 293 ~~ 294 (423)
++
T Consensus 161 ~~ 162 (166)
T PF05729_consen 161 KY 162 (166)
T ss_pred HH
Confidence 76
No 19
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.04 E-value=4.6e-06 Score=73.06 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=33.1
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccc
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR 212 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 212 (423)
.|+||+.+.+++...|... .+...+.+.|+|++|+|||+|.+.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999521 344568999999999999999999988543
No 20
>PTZ00202 tuzin; Provisional
Probab=98.03 E-value=2.7e-05 Score=75.55 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=60.3
Q ss_pred ccccCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHH
Q 042891 155 SLVNEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWV 234 (423)
Q Consensus 155 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 234 (423)
.+.+.+.|+||+.+...|...|...+. ...+++.|+|++|+|||||++.+..... + ....++.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHH
Confidence 344667899999999999999865332 2346999999999999999999987432 1 12222222 66899
Q ss_pred HHHHHHHhhcCC
Q 042891 235 TKSILKSIASDQ 246 (423)
Q Consensus 235 ~~~il~~l~~~~ 246 (423)
+..++.+|+.+.
T Consensus 326 Lr~LL~ALGV~p 337 (550)
T PTZ00202 326 LRSVVKALGVPN 337 (550)
T ss_pred HHHHHHHcCCCC
Confidence 999999998643
No 21
>PRK08727 hypothetical protein; Validated
Probab=97.99 E-value=0.00012 Score=66.80 Aligned_cols=129 Identities=12% Similarity=0.033 Sum_probs=75.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhhcCC---CCCcCCC-----------
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIASDQ---LVDDRDL----------- 253 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~---~~~~~~~----------- 253 (423)
..+.|+|..|+|||+|++.+++.. ......+.++++.+.. ..+.++++.+.... .++...+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~~~---~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf 116 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQAAA---GRLRDALEALEGRSLVALDGLESIAGQREDEVALF 116 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHHhh---hhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHH
Confidence 469999999999999999998843 3333355666654422 12223333332211 0011100
Q ss_pred ---C-----ceeeEeccCC---------HHHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHH
Q 042891 254 ---N-----LLQIVITTRN---------LCVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVK 316 (423)
Q Consensus 254 ---~-----~l~ilvTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~ 316 (423)
+ ...||+|++. +.+...+.....+++++++.++-.+++.+.+....-. --.+...-|++
T Consensus 117 ~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~----l~~e~~~~La~ 192 (233)
T PRK08727 117 DFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA----LDEAAIDWLLT 192 (233)
T ss_pred HHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHH
Confidence 0 1128888874 2223333334578999999999999999876432211 12466788888
Q ss_pred HcCCchhhh
Q 042891 317 KCNGLPLVA 325 (423)
Q Consensus 317 ~c~GlPlai 325 (423)
.|+|-.-.+
T Consensus 193 ~~~rd~r~~ 201 (233)
T PRK08727 193 HGERELAGL 201 (233)
T ss_pred hCCCCHHHH
Confidence 888755444
No 22
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00012 Score=74.76 Aligned_cols=160 Identities=15% Similarity=0.061 Sum_probs=95.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc------------------------
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH------------------------ 214 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------------ 214 (423)
-.++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.....
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 3478999999999999996432 24567899999999999999887632110
Q ss_pred cCccceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC---------ce-------e-eEeccCCHHHH
Q 042891 215 NHFDLKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN---------LL-------Q-IVITTRNLCVV 268 (423)
Q Consensus 215 ~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~---------~l-------~-ilvTTR~~~v~ 268 (423)
+.|...+.+..+.+..+.+ .+++++.+..... ++.+.+. .| . |++||....+.
T Consensus 90 G~hpDviEIdAas~~gVDd-IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDE-MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCCcceEecccccCCHHH-HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 1122234444443333333 3344444322110 0111110 01 1 77888777765
Q ss_pred hhcCCC-CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 269 EKTGTL-PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 269 ~~~~~~-~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
..+.+. ..+.++.++.++..+.+.+.+....... ..+..+.|++.++|.|.-...+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 443322 4799999999999998887653322111 1345688999999988654443
No 23
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.90 E-value=0.00018 Score=65.80 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=76.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc-HHHHHHHHHHHh---hcCCCCC---cCC-------
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD-IIWVTKSILKSI---ASDQLVD---DRD------- 252 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l---~~~~~~~---~~~------- 252 (423)
...+.|+|+.|+|||+|++.+++.. ...-..+.++++..... ..++.+.+ .+. ..++.+. ...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~dlliiDdi~~~~~~~~~~~~lf~ 121 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAWFVPEVLEGM-EQLSLVCIDNIECIAGDELWEMAIFD 121 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhhhhHHHHHHh-hhCCEEEEeChhhhcCCHHHHHHHHH
Confidence 3578999999999999999998843 22222344554433111 11121111 110 0111100 000
Q ss_pred -------CCceeeEeccCCH---------HHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHH
Q 042891 253 -------LNLLQIVITTRNL---------CVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVK 316 (423)
Q Consensus 253 -------~~~l~ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~ 316 (423)
-...++|+||+.. .+..++....++++++++.++-.+++.+++.... .. --+++..-|++
T Consensus 122 l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~---l~~~v~~~L~~ 197 (235)
T PRK08084 122 LYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FE---LPEDVGRFLLK 197 (235)
T ss_pred HHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHH
Confidence 0012378888653 3444555556899999999999999988664321 11 12467788888
Q ss_pred HcCCchhhhHhh
Q 042891 317 KCNGLPLVAKSL 328 (423)
Q Consensus 317 ~c~GlPlai~~~ 328 (423)
.+.|..-++..+
T Consensus 198 ~~~~d~r~l~~~ 209 (235)
T PRK08084 198 RLDREMRTLFMT 209 (235)
T ss_pred hhcCCHHHHHHH
Confidence 888765544433
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.88 E-value=7.5e-05 Score=77.33 Aligned_cols=214 Identities=14% Similarity=0.145 Sum_probs=131.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc-CcHHHHHHHHHHHhhcCCC
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED-FDIIWVTKSILKSIASDQL 247 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~il~~l~~~~~ 247 (423)
...|.+.|.. ..+.+.+.|..|+|.|||||+-+.... ...=..+.|.+.... -++.++...++..+..-..
T Consensus 24 R~rL~~~L~~-----~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p 95 (894)
T COG2909 24 RPRLLDRLRR-----ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDESDNDPARFLSYLIAALQQATP 95 (894)
T ss_pred cHHHHHHHhc-----CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCccCCHHHHHHHHHHHHHHhCc
Confidence 4566666653 336899999999999999999998751 223357899997664 3667777777776652110
Q ss_pred C--Cc-----------------------------------CCC--------------------CceeeEeccCCHHHHhh
Q 042891 248 V--DD-----------------------------------RDL--------------------NLLQIVITTRNLCVVEK 270 (423)
Q Consensus 248 ~--~~-----------------------------------~~~--------------------~~l~ilvTTR~~~v~~~ 270 (423)
. +. ++. +.+.+|||||+..-...
T Consensus 96 ~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~l 175 (894)
T COG2909 96 TLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGL 175 (894)
T ss_pred cccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcc
Confidence 0 00 010 11128999998643221
Q ss_pred cC---CCCcccCC----CCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHH
Q 042891 271 TG---TLPAYPLK----ELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWED 343 (423)
Q Consensus 271 ~~---~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~ 343 (423)
-. .....+++ .++.+|+-++|....... --....+.+.+..+|-+-|+..++=.++.+.+.+.-..
T Consensus 176 a~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 176 ARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred cceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 10 11123332 478999999998764211 11345789999999999999999888884433322222
Q ss_pred ------------HHcccccCCCcccchHHHhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHHHHHh
Q 042891 344 ------------VHNCKIWKLSEEDLLKQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQELYS 411 (423)
Q Consensus 344 ------------~~~~~~~~~~~~~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~eL~~ 411 (423)
..+.....++. ++|..++-||+++.- + ..|+..-. + ++-|...+++|-+
T Consensus 249 ~LsG~~~~l~dYL~eeVld~Lp~--~l~~FLl~~svl~~f---~-~eL~~~Lt---------g----~~ng~amLe~L~~ 309 (894)
T COG2909 249 GLSGAASHLSDYLVEEVLDRLPP--ELRDFLLQTSVLSRF---N-DELCNALT---------G----EENGQAMLEELER 309 (894)
T ss_pred hccchHHHHHHHHHHHHHhcCCH--HHHHHHHHHHhHHHh---h-HHHHHHHh---------c----CCcHHHHHHHHHh
Confidence 22222222332 788888889998762 2 33444321 1 1225678999999
Q ss_pred cCccc
Q 042891 412 RSFFQ 416 (423)
Q Consensus 412 r~l~q 416 (423)
++||-
T Consensus 310 ~gLFl 314 (894)
T COG2909 310 RGLFL 314 (894)
T ss_pred CCCce
Confidence 99874
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00026 Score=69.11 Aligned_cols=156 Identities=16% Similarity=0.057 Sum_probs=89.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc-------------------Cccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN-------------------HFDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 220 (423)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+...... .+...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999886432 245778999999999999999987431111 11112
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhcC-C
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKTG-T 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~-~ 273 (423)
.++..+....+ +-.++++..+..... ++.+.+. ... |++||....+...+. -
T Consensus 91 ~~~~~~~~~~v-~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR 169 (363)
T PRK14961 91 IEIDAASRTKV-EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR 169 (363)
T ss_pred EEecccccCCH-HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh
Confidence 33332222222 224455554321110 0111111 111 555555444443322 1
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
...+++.+++.++..+.+...+-..+... -.+....|++.++|.|-.+
T Consensus 170 c~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 170 CLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 24789999999999988877653322111 1356778999999988533
No 26
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00019 Score=75.80 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=93.5
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc-------------------Cccc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN-------------------HFDL 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~ 219 (423)
-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++...... .|..
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 3478999999999999986432 234568999999999999999987432111 1111
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCC-----Cc-----------ee-eEeccCCHHHHhhcCC
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDL-----NL-----------LQ-IVITTRNLCVVEKTGT 273 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~-----~~-----------l~-ilvTTR~~~v~~~~~~ 273 (423)
.+++..+....+. .+++|+..+..... ++...+ +. .+ |++||....+...+-.
T Consensus 90 viEidAas~~kVD-dIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS 168 (944)
T PRK14949 90 LIEVDAASRTKVD-DTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS 168 (944)
T ss_pred EEEeccccccCHH-HHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH
Confidence 2334332222222 23555554432111 011111 00 11 6777777666543222
Q ss_pred -CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 274 -LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 274 -~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
...|++.+|+.++..+.+.+.+-...-. --.+....|++.++|.|--+.
T Consensus 169 RCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 169 RCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred hheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 2579999999999998888765332111 123567889999999885333
No 27
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00019 Score=74.56 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=92.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc-------------------cCccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH-------------------NHFDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 220 (423)
.+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+..... +.|...
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 478999999999999985432 24466799999999999998877632111 122234
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhcCCC
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKTGTL 274 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~~~ 274 (423)
+++..+.+..+.+ .+++++.+..... ++.+.+. ... |++||....+...+.+.
T Consensus 91 iEIDAas~rgVDd-IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 91 VEMDAASNRGVDE-MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred EEecccccccHHH-HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 5554444333333 3444444321110 0111111 111 55555555554332222
Q ss_pred -CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCch-hhhHh
Q 042891 275 -PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLP-LVAKS 327 (423)
Q Consensus 275 -~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-lai~~ 327 (423)
..+.++.++.++..+.+.+.+-...-.. ..+..+.|++.++|.. -|+..
T Consensus 170 Cq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 170 CLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 4799999999999999988764322111 2466788999998855 44444
No 28
>PRK08118 topology modulation protein; Reviewed
Probab=97.82 E-value=1.4e-05 Score=69.07 Aligned_cols=34 Identities=38% Similarity=0.672 Sum_probs=28.2
Q ss_pred EEEEEccCCccHHHHHHHHHhccccc-cCccceee
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVH-NHFDLKSW 222 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~w 222 (423)
.|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999865444 56787774
No 29
>PRK09087 hypothetical protein; Validated
Probab=97.81 E-value=0.00015 Score=65.74 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=71.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcH----------------------HHHHHHHHHHhhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDI----------------------IWVTKSILKSIAS 244 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~----------------------~~~~~~il~~l~~ 244 (423)
-+.+.|+|+.|+|||+|++.+++.... .+++.. .+.. ..-+-+++..+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~-~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~ 115 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN-EIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQ 115 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH-HcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999998874311 122221 0100 0111112211111
Q ss_pred CCCCCcCCCCceeeEeccCC---------HHHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHH
Q 042891 245 DQLVDDRDLNLLQIVITTRN---------LCVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIV 315 (423)
Q Consensus 245 ~~~~~~~~~~~l~ilvTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~ 315 (423)
.. -.+|+|++. +.+...+.....+++++++.++-.+++.+++-... .. --+++..-|+
T Consensus 116 ~g---------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~-~~---l~~ev~~~La 182 (226)
T PRK09087 116 AG---------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ-LY---VDPHVVYYLV 182 (226)
T ss_pred CC---------CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHH
Confidence 00 117777763 33444455556899999999999999998874321 11 1146778888
Q ss_pred HHcCCchhhhHh
Q 042891 316 KKCNGLPLVAKS 327 (423)
Q Consensus 316 ~~c~GlPlai~~ 327 (423)
+.+.|..-++..
T Consensus 183 ~~~~r~~~~l~~ 194 (226)
T PRK09087 183 SRMERSLFAAQT 194 (226)
T ss_pred HHhhhhHHHHHH
Confidence 888887766654
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.80 E-value=0.00028 Score=68.21 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=37.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|++..++.+..++.. +..+.+.++|++|+||||+|+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999998843 23446789999999999999998874
No 31
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00042 Score=66.33 Aligned_cols=153 Identities=14% Similarity=0.245 Sum_probs=91.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc----ccccCccceeeEE-eCCcCcHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV----RVHNHFDLKSWTC-VSEDFDIIWV 234 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~~~~F~~~~wv~-vs~~~~~~~~ 234 (423)
.+++|-+..++.+.+++..+. -.....++|+.|+||||+|+.+++.. ....|.|...|.. -+....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357888888999999985432 34578899999999999999988732 1235667666665 344445544
Q ss_pred HHHHHHHhhcCCCC---------CcCCCCc----------------eeeEeccCCH-HHHhhcC-CCCcccCCCCChhhH
Q 042891 235 TKSILKSIASDQLV---------DDRDLNL----------------LQIVITTRNL-CVVEKTG-TLPAYPLKELSNNDC 287 (423)
Q Consensus 235 ~~~il~~l~~~~~~---------~~~~~~~----------------l~ilvTTR~~-~v~~~~~-~~~~~~l~~L~~~~~ 287 (423)
.+++.+.+...... +.+.++. ..+|++|.+. .+...+. -...+.+.+++.++.
T Consensus 78 ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 34455544332210 1011110 1144444443 3322211 124788999999998
Q ss_pred HHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 288 LSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 288 ~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
...+.... ... ..+.+..++..++|.|.-+.
T Consensus 158 ~~~l~~~~-~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 158 EKFISYKY-NDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHh-cCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 87776543 111 12346788999999886554
No 32
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.73 E-value=0.0001 Score=72.51 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=53.9
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 235 (423)
.++++.+...+.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||+++..++..+++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 45788888999999998642 467889999999999999999865444577888899998877655543
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00058 Score=70.15 Aligned_cols=157 Identities=13% Similarity=0.071 Sum_probs=90.9
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc-------------------ccCccc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV-------------------HNHFDL 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~ 219 (423)
-.+++|.+...+.|.+++..+. -...+.++|+.|+||||+|+.+.+.... .+.|..
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpD 88 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFID 88 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCc
Confidence 3478999999999999996432 2468899999999999999988763211 012222
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhc-C
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKT-G 272 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~-~ 272 (423)
.+.+..+....+.+ .++++..+..... ++.+.+. ... |++||....+.... +
T Consensus 89 viEIDAAs~~~Vdd-IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS 167 (702)
T PRK14960 89 LIEIDAASRTKVED-TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS 167 (702)
T ss_pred eEEecccccCCHHH-HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH
Confidence 34444443333333 3444444321110 0111111 111 44455444443221 2
Q ss_pred CCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 273 TLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 273 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
-...+++.+|+.++..+.+...+-..+... -.+....|++.++|.+-.+
T Consensus 168 RCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 168 RCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 225789999999999988887764332211 1356678999999977443
No 34
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00017 Score=65.74 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=91.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccc-------------------
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDL------------------- 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~------------------- 219 (423)
-.+|+|-++-++++.=.+..... ....+--|.++|++|.||||||.-+.+.. ...+..
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Em--gvn~k~tsGp~leK~gDlaaiLt~L 101 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANEL--GVNLKITSGPALEKPGDLAAILTNL 101 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHh--cCCeEecccccccChhhHHHHHhcC
Confidence 35799999888888777654332 34567789999999999999999999843 222211
Q ss_pred ----eeeEEeCC--cCcHHHHHHHHHHHhhcCCCCCc-CCCCcee--------eEeccCCHHHHhhcCCC--CcccCCCC
Q 042891 220 ----KSWTCVSE--DFDIIWVTKSILKSIASDQLVDD-RDLNLLQ--------IVITTRNLCVVEKTGTL--PAYPLKEL 282 (423)
Q Consensus 220 ----~~wv~vs~--~~~~~~~~~~il~~l~~~~~~~~-~~~~~l~--------ilvTTR~~~v~~~~~~~--~~~~l~~L 282 (423)
++||+-=+ ++.+.+++...++....+-.-+. ..-..++ |=.|||.-.+.+-+... -+.+++.-
T Consensus 102 e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY 181 (332)
T COG2255 102 EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFY 181 (332)
T ss_pred CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecC
Confidence 12221111 11222232222222211110000 0000011 55688865543322211 35778888
Q ss_pred ChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 283 SNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 283 ~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
+.+|-.++..+.+..-.-. --.+.+.+|+++..|-|--+.
T Consensus 182 ~~~eL~~Iv~r~a~~l~i~----i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 182 TVEELEEIVKRSAKILGIE----IDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred CHHHHHHHHHHHHHHhCCC----CChHHHHHHHHhccCCcHHHH
Confidence 8999988888877322111 123678999999999996443
No 35
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.70 E-value=0.0003 Score=66.17 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=75.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhhcCC----------CCCcCCCC
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIASDQ----------LVDDRDLN 254 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~----------~~~~~~~~ 254 (423)
+.+..+.+||++|+||||||+.+.+...-.. ..||..|..-.-..-.++|+++..... .++...++
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 4678899999999999999999998543322 456666654433333344444322110 00111111
Q ss_pred cee---------------eEeccCCHHHH---hhcCCCCcccCCCCChhhHHHHHHHhhc--C-CCC---CCCCcc---H
Q 042891 255 LLQ---------------IVITTRNLCVV---EKTGTLPAYPLKELSNNDCLSVFTQHSL--G-EKD---FSTHPS---L 307 (423)
Q Consensus 255 ~l~---------------ilvTTR~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~a~--~-~~~---~~~~~~---l 307 (423)
..| |=.||.++... ..++--.++-|++|+.++...++.+-.- + ... .-+++. .
T Consensus 236 ksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve 315 (554)
T KOG2028|consen 236 KSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVE 315 (554)
T ss_pred hhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhh
Confidence 111 33488776532 2223335789999999999988877321 1 111 111211 2
Q ss_pred HHHHHHHHHHcCCch
Q 042891 308 KEIGEKIVKKCNGLP 322 (423)
Q Consensus 308 ~~~~~~I~~~c~GlP 322 (423)
..+..-++..|.|-.
T Consensus 316 ~siidyla~lsdGDa 330 (554)
T KOG2028|consen 316 DSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHHHHHHHhcCchH
Confidence 345667777888753
No 36
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00045 Score=70.06 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=91.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc------------------cee
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD------------------LKS 221 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------------------~~~ 221 (423)
.+++|-+..++.|.+++.... -...+.++|++|+||||+|+.+++.....+.+. .+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 368999988888988885432 235679999999999999999887432222221 133
Q ss_pred eEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhcCC-C
Q 042891 222 WTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKTGT-L 274 (423)
Q Consensus 222 wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~~-~ 274 (423)
++..+....+. ..+++...+..... ++.+.+. ... |++|+....+...+.. .
T Consensus 89 el~~~~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 89 EIDAASNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EecccccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 34433333322 23344333322110 0111110 001 5555554444332222 2
Q ss_pred CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 275 PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 275 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
..+++.+++.++..+.+.+.+-..+-.. -.+....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4799999999999999988764332111 2466788999999988544
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=97.69 E-value=0.00049 Score=66.01 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=82.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc-ceeeEEeCCcCcHHHHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-LKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 238 (423)
.+++|.+..++.|..++.. ++.+-+-++|++|+||||+|+.+.+.. ....|. .++-+..++..... ..+++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 3678888888888877743 234457799999999999999998742 112222 12222233332222 33333
Q ss_pred HHHhhcCC------------CCCcCCCC----------------cee-eEeccCCHHHHhhcC-CCCcccCCCCChhhHH
Q 042891 239 LKSIASDQ------------LVDDRDLN----------------LLQ-IVITTRNLCVVEKTG-TLPAYPLKELSNNDCL 288 (423)
Q Consensus 239 l~~l~~~~------------~~~~~~~~----------------~l~-ilvTTR~~~v~~~~~-~~~~~~l~~L~~~~~~ 288 (423)
+..+.... .++.+.+. ... |++|+....+...+. -...+++++++.++..
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 33221110 00111110 001 343433333322111 1247899999999999
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh
Q 042891 289 SVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL 323 (423)
Q Consensus 289 ~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl 323 (423)
..+...+-..+-.-. .+....|++.++|-.-
T Consensus 165 ~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 165 GRLMKVVEAEKVPYV----PEGLEAIIFTADGDMR 195 (319)
T ss_pred HHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 988887643221111 3567889999998653
No 38
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.00061 Score=68.43 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=94.3
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc------c------------c-ccCccc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV------R------------V-HNHFDL 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~------~------------~-~~~F~~ 219 (423)
-.+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+.. . + ...+..
T Consensus 12 f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~D 86 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCC
Confidence 3478999988888888885432 23478999999999999998886521 0 0 012223
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhcCC
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKTGT 273 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~~ 273 (423)
++.++.+....+.+ .++++........ ++.+.+. ... |++||....+...+..
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S 165 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS 165 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH
Confidence 45555554444444 3445544322111 0111110 011 6777776666554322
Q ss_pred -CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 274 -LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 274 -~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
...+++.+++.++..+.+.+.+...+..- -.+....|++.++|.+-.+
T Consensus 166 Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 166 RCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred hheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 35789999999999988888764332211 1356678899998877533
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0005 Score=70.02 Aligned_cols=159 Identities=21% Similarity=0.103 Sum_probs=91.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc-------------------ccCccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV-------------------HNHFDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~ 220 (423)
.+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+...- ...|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468899999999999885422 3456789999999999999998762211 0123333
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCCc----------------ee-eEeccCCHHHHhhcC-C
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLNL----------------LQ-IVITTRNLCVVEKTG-T 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~~----------------l~-ilvTTR~~~v~~~~~-~ 273 (423)
+++.......+.+ .+.++..+..... ++.+.+.. .. |++||....+...+. -
T Consensus 91 ieidaas~~gvd~-ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR 169 (546)
T PRK14957 91 IEIDAASRTGVEE-TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR 169 (546)
T ss_pred EEeecccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh
Confidence 4444333333332 2344443321110 01111110 11 667776655553322 2
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCch-hhhHhh
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLP-LVAKSL 328 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-lai~~~ 328 (423)
...+++.+++.++....+...+-..+- .--......|++.++|.+ .|+..+
T Consensus 170 c~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 170 CIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 257999999999988777765432211 112355678999999965 344444
No 40
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00049 Score=71.25 Aligned_cols=158 Identities=16% Similarity=0.071 Sum_probs=92.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc-------------------cCccc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH-------------------NHFDL 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~ 219 (423)
-.+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+...-. +.|..
T Consensus 15 f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCC
Confidence 3478999999999999885432 23457899999999999999987632111 11212
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC-----ce-----------e-eEeccCCHHHHhhcCC
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN-----LL-----------Q-IVITTRNLCVVEKTGT 273 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~-----~l-----------~-ilvTTR~~~v~~~~~~ 273 (423)
.+.+..+....+.+ .++|+..+..... ++.+.+. .| . |++||....+...+.+
T Consensus 90 ~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 90 LIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred ceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh
Confidence 23343332233333 3455554432211 0111111 11 1 7778777666543222
Q ss_pred -CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 274 -LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 274 -~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
...+.+.+|+.++....+.+..-..... --......|++.++|.+--+.
T Consensus 169 RC~~~~f~~Ls~~ei~~~L~~il~~e~i~----~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 169 RCLQFHLKALDVEQIRQQLEHILQAEQIP----FEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred hheEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 2579999999999998888765222211 113556789999999775433
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.00047 Score=68.61 Aligned_cols=155 Identities=16% Similarity=0.019 Sum_probs=88.7
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccC--c----c-------------c
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH--F----D-------------L 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~--F----~-------------~ 219 (423)
-.+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.+.+...-... + . .
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~d 91 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD 91 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcc
Confidence 3468999989999999885432 1346899999999999999999873211100 0 0 0
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhcCC
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKTGT 273 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~~ 273 (423)
++-+..+.+..+. ..+++...+..... ++.+.+. .+. |+.||....+...+..
T Consensus 92 viEIdaas~~gVd-~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 92 VLEIDAASNRGIE-NIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred ceeechhhcccHH-HHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 1112222222222 23344443321110 0111110 001 6677776666444333
Q ss_pred C-CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh
Q 042891 274 L-PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL 323 (423)
Q Consensus 274 ~-~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl 323 (423)
. ..|.+.+++.++-.+.+.+.+-..+... -.+....|++.++|.+-
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHH
Confidence 2 4689999999998888887754322111 14567889999999873
No 42
>PRK05642 DNA replication initiation factor; Validated
Probab=97.63 E-value=0.00078 Score=61.55 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=74.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhh------cCCCC---CcCCC----
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIA------SDQLV---DDRDL---- 253 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~------~~~~~---~~~~~---- 253 (423)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+-... ...+++.+. .++.. .....
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~L 119 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAELLDR---GPELLDNLEQYELVCLDDLDVIAGKADWEEAL 119 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHHHHhh---hHHHHHhhhhCCEEEEechhhhcCChHHHHHH
Confidence 3678999999999999999998732 222234566665331111 112222211 11110 00000
Q ss_pred ---------CceeeEeccCCHH---------HHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHH
Q 042891 254 ---------NLLQIVITTRNLC---------VVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIV 315 (423)
Q Consensus 254 ---------~~l~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~ 315 (423)
..-++|+|++... +..++....++++++++.++-..+++.++.... ... -+++..-|+
T Consensus 120 f~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l---~~ev~~~L~ 195 (234)
T PRK05642 120 FHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHL---TDEVGHFIL 195 (234)
T ss_pred HHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHH
Confidence 0112777776432 122223335788999999999999986664321 111 147778888
Q ss_pred HHcCCchhhhHhhh
Q 042891 316 KKCNGLPLVAKSLG 329 (423)
Q Consensus 316 ~~c~GlPlai~~~g 329 (423)
+.+.|..-.+..+-
T Consensus 196 ~~~~~d~r~l~~~l 209 (234)
T PRK05642 196 TRGTRSMSALFDLL 209 (234)
T ss_pred HhcCCCHHHHHHHH
Confidence 88888765544433
No 43
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.00081 Score=69.47 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=91.7
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc------------------------c
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV------------------------H 214 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------------~ 214 (423)
-.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+..-. .
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHc
Confidence 3468898888899999886432 3457789999999999999988542110 0
Q ss_pred cCccceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHH
Q 042891 215 NHFDLKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVV 268 (423)
Q Consensus 215 ~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~ 268 (423)
+.+...+++..+....+.+ .+++++.+..... ++.+.+. ... |++||....+.
T Consensus 90 g~h~D~~eldaas~~~Vd~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CCCCceeecCcccccCHHH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 1122233444333333333 3445554322111 0111110 011 66676655554
Q ss_pred hhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 269 EKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 269 ~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
..+.. ...+++++|+.++..+.+.+.+-..+-.. -.+....|++.++|.+--+.
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 33222 25799999999999888887653322111 13567888999999774443
No 44
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.63 E-value=0.00086 Score=64.21 Aligned_cols=154 Identities=13% Similarity=0.130 Sum_probs=82.9
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe--CCcCcHH---HH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV--SEDFDII---WV 234 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~---~~ 234 (423)
.+++|++..++.+..++... ..+.+.++|.+|+||||+|+.+.+.. ....+.. .++.+ +...... +.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGIDVIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchHHHHHH
Confidence 45889999999999998532 34457999999999999999998742 1112211 12222 2222211 12
Q ss_pred HHHHHHHhhcC--C-----CCCcCCCC----------------ceeeEecc-CCHHHHhhc-CCCCcccCCCCChhhHHH
Q 042891 235 TKSILKSIASD--Q-----LVDDRDLN----------------LLQIVITT-RNLCVVEKT-GTLPAYPLKELSNNDCLS 289 (423)
Q Consensus 235 ~~~il~~l~~~--~-----~~~~~~~~----------------~l~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~ 289 (423)
+.++....... . .++.+.+. ...+|+++ ....+.... .....+++.+++.++...
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~ 168 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAE 168 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHH
Confidence 22222211000 0 00111110 01144444 322221111 112368899999999888
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 290 VFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 290 Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
.+...+....-.- -.+....+++.++|.+--+
T Consensus 169 ~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 169 RLRYIAENEGIEI----TDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 8887764322111 1356788899999977553
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.62 E-value=0.00042 Score=73.07 Aligned_cols=149 Identities=20% Similarity=0.236 Sum_probs=77.7
Q ss_pred CceeeecchHH---HHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeC--CcCcHHHH
Q 042891 160 AKVYGRDKEKE---ETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVS--EDFDIIWV 234 (423)
Q Consensus 160 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~ 234 (423)
.+++|.+..+. .+.+.+.. +....+.++|++|+||||||+.+++. ...+|.. ++.+ ...+...+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~~~i~dir~~ 96 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVLAGVKDLRAE 96 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhhhhhHHHHHH
Confidence 46888887664 45555532 34567789999999999999999984 3444411 1111 10112222
Q ss_pred HHHHHHHhhcCC------CCCcCCCCce------------e-eEe--ccCCHH--HHhhc-CCCCcccCCCCChhhHHHH
Q 042891 235 TKSILKSIASDQ------LVDDRDLNLL------------Q-IVI--TTRNLC--VVEKT-GTLPAYPLKELSNNDCLSV 290 (423)
Q Consensus 235 ~~~il~~l~~~~------~~~~~~~~~l------------~-ilv--TTR~~~--v~~~~-~~~~~~~l~~L~~~~~~~L 290 (423)
+..+...+.... .++.+.++.. . +++ ||.+.. +.... +-...+.+++|+.++...+
T Consensus 97 i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~I 176 (725)
T PRK13341 97 VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQL 176 (725)
T ss_pred HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHH
Confidence 222222111100 0111111110 1 233 555532 22211 1134789999999999999
Q ss_pred HHHhhcC------CCCCCCCccHHHHHHHHHHHcCCch
Q 042891 291 FTQHSLG------EKDFSTHPSLKEIGEKIVKKCNGLP 322 (423)
Q Consensus 291 f~~~a~~------~~~~~~~~~l~~~~~~I~~~c~GlP 322 (423)
+.+.+-. ..... --.+....|++.+.|..
T Consensus 177 L~~~l~~~~~~~g~~~v~---I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 177 LKRALQDKERGYGDRKVD---LEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHHHHHhhcCCcccC---CCHHHHHHHHHhCCCCH
Confidence 9876531 11111 11345677888887743
No 46
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.00099 Score=67.38 Aligned_cols=156 Identities=19% Similarity=0.112 Sum_probs=92.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc----------Ccc-----------
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN----------HFD----------- 218 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----------~F~----------- 218 (423)
.+++|-+..+..|.+.+..+. -...+-++|+.|+||||+|+.+++...... .+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 468899998998888775432 245788999999999999999987431111 011
Q ss_pred --ceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC-----c-----------ee-eEeccCCHHHHhh
Q 042891 219 --LKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN-----L-----------LQ-IVITTRNLCVVEK 270 (423)
Q Consensus 219 --~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~-----~-----------l~-ilvTTR~~~v~~~ 270 (423)
.++.+.......+.++ +++++....... ++...+. . .. |++||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~I-r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDI-RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHH-HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHH
Confidence 1222333333333333 445444322111 0111110 0 01 6677777776554
Q ss_pred cCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 271 TGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 271 ~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
+.. ...+++.+++.++..+.+...+-..+... -.+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 432 24688999999999999988874332111 1355677999999976433
No 47
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.0011 Score=67.95 Aligned_cols=162 Identities=18% Similarity=0.114 Sum_probs=92.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccC-------------------ccc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH-------------------FDL 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~ 219 (423)
-.+++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+...-... ...
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~D 89 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVD 89 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCc
Confidence 3478999999999999885432 2357889999999999999998763211000 011
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC-----ce------------eeEeccCCHHHHhhc-C
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN-----LL------------QIVITTRNLCVVEKT-G 272 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~-----~l------------~ilvTTR~~~v~~~~-~ 272 (423)
.+++..+....+.+ .+.+...+..... ++.+.+. .| -|++|+....+...+ +
T Consensus 90 iieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 90 IVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred eEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh
Confidence 23444333233333 2444443322111 0111110 00 066677665554332 2
Q ss_pred CCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh-hhHhhhh
Q 042891 273 TLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL-VAKSLGG 330 (423)
Q Consensus 273 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~~g~ 330 (423)
-...+++.+++.++....+...+-..+..-. .+.+..+++.++|.+- |+..+-.
T Consensus 169 Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 169 RCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2347899999999998888876533221111 3567889999999654 4444443
No 48
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.61 E-value=0.00014 Score=71.13 Aligned_cols=52 Identities=21% Similarity=0.141 Sum_probs=38.9
Q ss_pred CCceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++.|++..+++|.+.+..+-. -+-...+-+.++|++|+|||+||+.+++.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999887743210 01123456999999999999999999984
No 49
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.0011 Score=66.81 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=96.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc-------------------Cccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN-------------------HFDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-------------------~F~~~ 220 (423)
.+++|.+.....|...+..+. -...+-++|++|+||||+|+.+.+...... .+...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468998888888888775322 235689999999999999999977421110 01122
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCC----------------Ccee-eEeccCCHHHHhhcCC-
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDL----------------NLLQ-IVITTRNLCVVEKTGT- 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~----------------~~l~-ilvTTR~~~v~~~~~~- 273 (423)
+.+..+......++ +.|...+..... ++.+.+ .... |+.||....+...+..
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR 167 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR 167 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC
Confidence 33344333333333 334433321110 000000 0111 4455543444443322
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC-chhhhHhhhhhhhc---CCChhHHHHHH
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNG-LPLVAKSLGGLLRV---KYDPNDWEDVH 345 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G-lPlai~~~g~~L~~---~~~~~~W~~~~ 345 (423)
...+.+.+++.++....+...+....-.- -.+....|++.++| ++.++..+-.+... +.+.+....++
T Consensus 168 ~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l 239 (472)
T PRK14962 168 CQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEAL 239 (472)
T ss_pred cEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 25788999999998888887764322111 13566788887754 56777666554332 24555555554
No 50
>PF14516 AAA_35: AAA-like domain
Probab=97.58 E-value=0.0031 Score=60.73 Aligned_cols=161 Identities=15% Similarity=0.182 Sum_probs=97.2
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC----c-CcHH
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE----D-FDII 232 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~----~-~~~~ 232 (423)
+.+..+.|...-+++.+.|..++ ..+.|.|+..+|||+|...+.+..+- ..|. .+++++.. . .+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~-~~~~-~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGYR-CVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHH-CCCE-EEEEEeecCCCcccCCHH
Confidence 44556788877778888886533 48999999999999999999875432 2333 34565443 1 2444
Q ss_pred HHHHHHHHHhhc----CCC-C---C--c--------------------------CCCC----------------------
Q 042891 233 WVTKSILKSIAS----DQL-V---D--D--------------------------RDLN---------------------- 254 (423)
Q Consensus 233 ~~~~~il~~l~~----~~~-~---~--~--------------------------~~~~---------------------- 254 (423)
.+++.++..+.. +.. . + . ++.+
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 455444443322 110 0 0 0 0000
Q ss_pred --------cee-eEeccCCHHHHhhc-----CCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC
Q 042891 255 --------LLQ-IVITTRNLCVVEKT-----GTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNG 320 (423)
Q Consensus 255 --------~l~-ilvTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G 320 (423)
.+. |++.+......... +....++|++++.+|...|...+-.. . . ....++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~-~----~~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---F-S----QEQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---C-C----HHHHHHHHHHHCC
Confidence 000 33332211111111 11247889999999999999877321 1 1 2338999999999
Q ss_pred chhhhHhhhhhhhcC
Q 042891 321 LPLVAKSLGGLLRVK 335 (423)
Q Consensus 321 lPlai~~~g~~L~~~ 335 (423)
+|.-+..++..+..+
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999765
No 51
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.00099 Score=67.72 Aligned_cols=157 Identities=14% Similarity=0.056 Sum_probs=91.4
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc-------------------cCccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH-------------------NHFDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 220 (423)
.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+..--. +.|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999996432 23467899999999999999887632111 122224
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCCC---------CcCCCC----------------cee-eEeccCCHHHHhhcCC-
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQLV---------DDRDLN----------------LLQ-IVITTRNLCVVEKTGT- 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~~---------~~~~~~----------------~l~-ilvTTR~~~v~~~~~~- 273 (423)
+.+..+....+.++ ++++..+...... +.+.+. ... |++||....+...+..
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR 169 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR 169 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH
Confidence 44554444444443 4566554322110 011110 011 6667765555433221
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
-..+++.+++.++....+...+-..+-.. -......|++.++|.+--+.
T Consensus 170 c~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 170 CLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHH
Confidence 24688999999887776665542222111 13456788899999775443
No 52
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.55 E-value=0.00011 Score=71.05 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=45.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc--CcHHHHHHHHHHHhh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED--FDIIWVTKSILKSIA 243 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~il~~l~ 243 (423)
-..++|+|++|.|||||++.+++... .++|+..+|+.+.+. .++.++++.++..+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vv 225 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVV 225 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEE
Confidence 35799999999999999999999643 347999999999865 688899888865443
No 53
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.54 E-value=0.00092 Score=60.77 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=36.9
Q ss_pred CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhh
Q 042891 275 PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLL 332 (423)
Q Consensus 275 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L 332 (423)
..+.+++|+.++-..++.+.+-... .. --++....+++.+.|.+..+..+-..|
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~~~~~-v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAAAERG-LQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 5788999999887777766432211 11 123677888889999998877666655
No 54
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.53 E-value=0.00021 Score=59.34 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=41.1
Q ss_pred eeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC
Q 042891 163 YGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE 227 (423)
Q Consensus 163 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 227 (423)
+|++..+..+...+... ....+.|+|++|+|||+|++.+++... ..-..++++..+.
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~ 57 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASD 57 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhh
Confidence 36778888888888542 346889999999999999999998532 2223455665544
No 55
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.51 E-value=0.00032 Score=73.52 Aligned_cols=83 Identities=18% Similarity=0.059 Sum_probs=52.6
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc---ccCcc--ceeeEEeCCcCcHHH
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV---HNHFD--LKSWTCVSEDFDIIW 233 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~ 233 (423)
+..+.||++++++|...|...-. +.....++-|+|++|.|||+.++.|.+..+- ....+ .+++|....-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45799999999999998864211 1223357889999999999999999874321 11122 234555443334444
Q ss_pred HHHHHHHHh
Q 042891 234 VTKSILKSI 242 (423)
Q Consensus 234 ~~~~il~~l 242 (423)
++..|..++
T Consensus 833 IYqvI~qqL 841 (1164)
T PTZ00112 833 AYQVLYKQL 841 (1164)
T ss_pred HHHHHHHHH
Confidence 555555444
No 56
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.51 E-value=0.00016 Score=69.32 Aligned_cols=144 Identities=18% Similarity=0.188 Sum_probs=87.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcC-cHHHHHHHHHHHhhcCCCCCc--------------
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDF-DIIWVTKSILKSIASDQLVDD-------------- 250 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~il~~l~~~~~~~~-------------- 250 (423)
..+-+.++|.|||||||++-.+.+ +...|..-.|..--.++ +...+.-.....++....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr 89 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRR 89 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhh
Confidence 467899999999999999999887 45566544443322222 222222222222322221100
Q ss_pred -----CCCCc------------------eeeEeccCCHHHHhhcCCCCcccCCCCChh-hHHHHHHHhhcCCCCC-CCCc
Q 042891 251 -----RDLNL------------------LQIVITTRNLCVVEKTGTLPAYPLKELSNN-DCLSVFTQHSLGEKDF-STHP 305 (423)
Q Consensus 251 -----~~~~~------------------l~ilvTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~~~~~-~~~~ 305 (423)
++-+. +.|+.|+|..... .....+.+++|+.. ++.++|...+...... .-..
T Consensus 90 ~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 90 ALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 00011 1177777754332 33457888888875 7999998776332211 1112
Q ss_pred cHHHHHHHHHHHcCCchhhhHhhhhhhhcC
Q 042891 306 SLKEIGEKIVKKCNGLPLVAKSLGGLLRVK 335 (423)
Q Consensus 306 ~l~~~~~~I~~~c~GlPlai~~~g~~L~~~ 335 (423)
.-.....+|.++..|.|++|...++..++-
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl 196 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSL 196 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 334678899999999999999999888764
No 57
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0017 Score=67.13 Aligned_cols=159 Identities=13% Similarity=0.062 Sum_probs=93.7
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccC----------------------
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH---------------------- 216 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---------------------- 216 (423)
-.+++|.+..++.|.+++..+. -..-+-++|+.|+||||+|+.+.+.......
T Consensus 23 f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~ 97 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIME 97 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhc
Confidence 3478999999999999986432 2447889999999999999998763211110
Q ss_pred --ccceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC-----c-----------ee-eEeccCCHHHH
Q 042891 217 --FDLKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN-----L-----------LQ-IVITTRNLCVV 268 (423)
Q Consensus 217 --F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~-----~-----------l~-ilvTTR~~~v~ 268 (423)
..-++++.......+.+ .++|+..+..... ++.+.+. . .. |++||....+.
T Consensus 98 g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 01123333333333333 3455554432111 0111111 0 11 66676665554
Q ss_pred hhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHh
Q 042891 269 EKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 327 (423)
Q Consensus 269 ~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 327 (423)
..+.. ...+++..++.++....+.+.+-.....- -.+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 33322 24789999999999988888763322111 135678889999998765543
No 58
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.0017 Score=69.47 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=88.9
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc----------------------cCc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH----------------------NHF 217 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------------------~~F 217 (423)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+..... .++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 478999999999999986432 23468899999999999999987643211 111
Q ss_pred cceeeEEeCCcCcHHHHHHHHHHHhhcCCCCC------cCCCCce-------------------e-eEeccCCHHHHhhc
Q 042891 218 DLKSWTCVSEDFDIIWVTKSILKSIASDQLVD------DRDLNLL-------------------Q-IVITTRNLCVVEKT 271 (423)
Q Consensus 218 ~~~~wv~vs~~~~~~~~~~~il~~l~~~~~~~------~~~~~~l-------------------~-ilvTTR~~~v~~~~ 271 (423)
+ ++++.-.....+.++ +++.+.+....... .++.+.+ . |++||....+...+
T Consensus 90 d-v~eidaas~~~Vd~i-R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TI 167 (824)
T PRK07764 90 D-VTEIDAASHGGVDDA-RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTI 167 (824)
T ss_pred c-EEEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 2 233433222233333 33433322111100 0111111 0 66777666665433
Q ss_pred CC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 272 GT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 272 ~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
.. ...|++..++.++..+.+.+..-..... --......|++.++|.+..+
T Consensus 168 rSRc~~v~F~~l~~~~l~~~L~~il~~EGv~----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 168 RSRTHHYPFRLVPPEVMRGYLERICAQEGVP----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HhheeEEEeeCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 22 3578999999999888887654222111 11345678899999977433
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=97.46 E-value=0.0014 Score=66.64 Aligned_cols=156 Identities=20% Similarity=0.179 Sum_probs=88.0
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSIL 239 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 239 (423)
.+++|.+..++.+.+|+..-. .....+.+.|+|++|+||||+|+.+++... |+ .+-++.++..+. +.+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 469999999999999986432 112367899999999999999999998531 22 222333432222 2223322
Q ss_pred HHhhcC------C-----CCCcCCCC---------ce---------eeEeccCCH-HHHh-hc-CCCCcccCCCCChhhH
Q 042891 240 KSIASD------Q-----LVDDRDLN---------LL---------QIVITTRNL-CVVE-KT-GTLPAYPLKELSNNDC 287 (423)
Q Consensus 240 ~~l~~~------~-----~~~~~~~~---------~l---------~ilvTTR~~-~v~~-~~-~~~~~~~l~~L~~~~~ 287 (423)
...... . .++.+.+. .+ .||+|+.+. .... .+ .....+.+.+++.++.
T Consensus 86 ~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i 165 (482)
T PRK04195 86 GEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSI 165 (482)
T ss_pred HHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCHHHH
Confidence 221110 0 00111110 01 055555332 1111 11 1224688999999998
Q ss_pred HHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHh
Q 042891 288 LSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 327 (423)
Q Consensus 288 ~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 327 (423)
...+...+....-... .+....|++.++|-.-.+..
T Consensus 166 ~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 166 VPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 8888877643322221 36678889999886654433
No 60
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.46 E-value=0.00068 Score=73.14 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=37.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.++++++..|... ...-+.++|.+|+||||||..+.+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998643 2335569999999999999999874
No 61
>PF13173 AAA_14: AAA domain
Probab=97.43 E-value=0.00032 Score=57.59 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=55.5
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHH----HHHHHHHHhhcCC----CCCc---C-----
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIW----VTKSILKSIASDQ----LVDD---R----- 251 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~----~~~~il~~l~~~~----~~~~---~----- 251 (423)
+++.|.|+.|+|||||+++++.+.. .....++++..+...... +.+.+.+...... .++. .
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~ 79 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDA 79 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHH
Confidence 5899999999999999999987532 335567777665433211 2222333211100 0000 0
Q ss_pred ------CCCceeeEeccCCHHHHhhcC------CCCcccCCCCChhhH
Q 042891 252 ------DLNLLQIVITTRNLCVVEKTG------TLPAYPLKELSNNDC 287 (423)
Q Consensus 252 ------~~~~l~ilvTTR~~~v~~~~~------~~~~~~l~~L~~~~~ 287 (423)
.....+|++|+.+......-. -...++|.||+..|.
T Consensus 80 lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 80 LKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 011234899888876664311 113578888887663
No 62
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0015 Score=67.79 Aligned_cols=158 Identities=14% Similarity=0.078 Sum_probs=90.6
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc-------------------cCccc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH-------------------NHFDL 219 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~ 219 (423)
-.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+..... +.|..
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 3479999999999999986432 24578999999999999999887632111 11212
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCC---------CCCcCCCC----------------cee-eEeccCCHHHHhhc-C
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQ---------LVDDRDLN----------------LLQ-IVITTRNLCVVEKT-G 272 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~---------~~~~~~~~----------------~l~-ilvTTR~~~v~~~~-~ 272 (423)
.+.+..+....+ +.+++++....... .++.+.+. ... |++||....+...+ +
T Consensus 90 vlEidaAs~~gV-d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS 168 (709)
T PRK08691 90 LLEIDAASNTGI-DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS 168 (709)
T ss_pred eEEEeccccCCH-HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH
Confidence 234443333333 23344544321110 01111111 111 55555444333221 1
Q ss_pred CCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 273 TLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 273 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
-...+.+.+++.++....+.+.+-..+-.. .......|++.++|.+--+.
T Consensus 169 RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 169 RCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHH
Confidence 124688899999999988887764332111 23567899999999874443
No 63
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0017 Score=66.45 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=89.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc-------------------cCccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH-------------------NHFDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------------------~~F~~~ 220 (423)
.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+..... +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999986432 23467899999999999999987632111 112233
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhcCC-
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKTGT- 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~~- 273 (423)
+++..+.+..+. ..++++..+..... ++.+.+. ... |++||....+...+..
T Consensus 91 ~ei~~~~~~~vd-~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR 169 (527)
T PRK14969 91 IEVDAASNTQVD-AMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 169 (527)
T ss_pred eEeeccccCCHH-HHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH
Confidence 445433333333 33455554422111 0111111 011 6667655444322111
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL 323 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl 323 (423)
-..+++.+++.++..+.+.+.+-..+-. --......|++.++|.+-
T Consensus 170 c~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 170 CLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHH
Confidence 1478899999999888887765322211 113556888999999774
No 64
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0019 Score=63.50 Aligned_cols=159 Identities=11% Similarity=0.075 Sum_probs=88.9
Q ss_pred CceeeecchHHHHHHHHhcCCC---C-CCCCceEEEEEccCCccHHHHHHHHHhccccc------------------cCc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL---R-TDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH------------------NHF 217 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~---~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------~~F 217 (423)
.+++|-+..++.|.+++..+.. . +..-..-+-++|+.|+|||++|..+.....-. ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3588989889999999865421 0 00124568899999999999999886521110 011
Q ss_pred cceeeEEe-CCcCcHHHHHHHHHHHhhcCCC---------CCcCCC-----------------CceeeEeccCCHHHHhh
Q 042891 218 DLKSWTCV-SEDFDIIWVTKSILKSIASDQL---------VDDRDL-----------------NLLQIVITTRNLCVVEK 270 (423)
Q Consensus 218 ~~~~wv~v-s~~~~~~~~~~~il~~l~~~~~---------~~~~~~-----------------~~l~ilvTTR~~~v~~~ 270 (423)
.-..++.. +....+.+ .+++.+.+..... ++.+.+ ..+-||+||....+...
T Consensus 85 pD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred CCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 11223322 12223333 3345554432211 001111 00116666665555433
Q ss_pred cCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 271 TGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 271 ~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
+.+ -..+.+.+++.++..+.+.... + . . .+.+..++..++|.|.....+
T Consensus 164 IrSRc~~i~f~~~~~~~i~~~L~~~~-~---~-~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 164 IRSRCRHVALRTPSVEAVAEVLVRRD-G---V-D----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHhhCeEEECCCCCHHHHHHHHHHhc-C---C-C----HHHHHHHHHHcCCCHHHHHHH
Confidence 322 2578999999999998887432 1 1 1 355788999999999755433
No 65
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0023 Score=65.89 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=89.0
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc----------------------cCc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH----------------------NHF 217 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----------------------~~F 217 (423)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-. .+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 478999999999999985432 23467899999999999999887632110 111
Q ss_pred cceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCC-----Cc-----------ee-eEeccCCHHHHhhc
Q 042891 218 DLKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDL-----NL-----------LQ-IVITTRNLCVVEKT 271 (423)
Q Consensus 218 ~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~-----~~-----------l~-ilvTTR~~~v~~~~ 271 (423)
.++.+..+....+.++ ++|...+..... ++.+.+ +. .. |++||....+...+
T Consensus 88 -dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 88 -DVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred -eEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 1233433332233332 444443321110 011110 00 00 77787776665443
Q ss_pred C-CCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh
Q 042891 272 G-TLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL 323 (423)
Q Consensus 272 ~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl 323 (423)
. -...+++..++.++..+.+...+-..+.... ......|++.++|.+-
T Consensus 166 ~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 166 RSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHH
Confidence 2 2357999999999988888776533221111 3456778888888763
No 66
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.001 Score=65.86 Aligned_cols=155 Identities=13% Similarity=0.047 Sum_probs=86.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc------------------------
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN------------------------ 215 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------------------------ 215 (423)
.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|..+.+...-..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 478899988899988885321 234688999999999999998876331111
Q ss_pred ----CccceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCH
Q 042891 216 ----HFDLKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNL 265 (423)
Q Consensus 216 ----~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~ 265 (423)
+++.. .+.-+....+.+ .+++.+.+..... ++.+.+. ... |++|++..
T Consensus 91 ~~~~~~n~~-~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 91 DAGTSLNIS-EFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred hcCCCCCeE-eecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11111 111112122222 3344454422110 0111111 011 55566655
Q ss_pred HHHhhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 266 CVVEKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 266 ~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
.+...+.. ...+++.+++.++..+.+...+-..... --.+.+..|++.++|.+--+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~----i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS----VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 55433221 1468899999999888777765322211 11467889999999977533
No 67
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0033 Score=60.89 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=90.8
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc-------cCc-----cc------
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH-------NHF-----DL------ 219 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~-------~~F-----~~------ 219 (423)
....++|.+.....+...+..+. -...+-|+|+.|+||||||..+.+..--. ..+ .|
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 45679999999999999985432 34579999999999999998876632110 000 11
Q ss_pred -------eeeEEeC---------CcCcHHHHHHHHHHHhhcCCCC---------CcCCCCc-----------------ee
Q 042891 220 -------KSWTCVS---------EDFDIIWVTKSILKSIASDQLV---------DDRDLNL-----------------LQ 257 (423)
Q Consensus 220 -------~~wv~vs---------~~~~~~~~~~~il~~l~~~~~~---------~~~~~~~-----------------l~ 257 (423)
..++... ....+. -.+.+.+.+...... +.+.++. +-
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd-~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVD-EIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHH-HHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 1112111 011122 223444443322110 1111110 11
Q ss_pred eEeccCCHHHHhhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 258 IVITTRNLCVVEKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 258 ilvTTR~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
|++|++...+.....+ -..+.+.+++.++..+++...... .+ -..+....|++.++|.|..+..+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~-----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG-----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6666665444332222 247999999999999999874311 11 11345678999999999866544
No 68
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.36 E-value=0.0052 Score=59.80 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=88.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc--------------------cCccc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH--------------------NHFDL 219 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~ 219 (423)
.+++|.+..++.|.+++..+. -...+-++|++|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 467999999999999885432 24578899999999999998887532100 12222
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCC----------------CceeeEeccCC-HHHHhhc-C
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDL----------------NLLQIVITTRN-LCVVEKT-G 272 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~----------------~~l~ilvTTR~-~~v~~~~-~ 272 (423)
+++.-+...... -.++++..+..... ++.+.+ ....+|++|.+ ..+...+ +
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s 166 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS 166 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh
Confidence 333322212221 22334443322110 011111 01114444443 3333322 1
Q ss_pred CCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhh
Q 042891 273 TLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLG 329 (423)
Q Consensus 273 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g 329 (423)
....+++.+++.++..+.+...+-..+-.- -.+.+..+++.++|.|..+....
T Consensus 167 r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 167 RCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred heeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 224678889999998888887653322111 13677889999999886554443
No 69
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.35 E-value=0.00018 Score=59.07 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=44.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccc---cCccceeeEEeCCcCcHHHHHHHHHHHhhcCCC
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVH---NHFDLKSWTCVSEDFDIIWVTKSILKSIASDQL 247 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~ 247 (423)
-+++.|+|.+|+|||++++.+.++.... ..-..++|+.++...+...+...|+..++....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK 67 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc
Confidence 4689999999999999999998843110 003445699988888899999999999987654
No 70
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0047 Score=64.20 Aligned_cols=158 Identities=15% Similarity=0.054 Sum_probs=89.6
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccC---c-----------------cc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH---F-----------------DL 219 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~---F-----------------~~ 219 (423)
.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+....... + ..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d 90 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVD 90 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCe
Confidence 478999999999998885432 2346789999999999999998763211110 0 01
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCCc-----e-----------e-eEeccCCHHHHhhcC-
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLNL-----L-----------Q-IVITTRNLCVVEKTG- 272 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~~-----l-----------~-ilvTTR~~~v~~~~~- 272 (423)
++.+..+......+ .++|+..+..... ++.+.+.. | . |++|+....+...+.
T Consensus 91 ~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 91 VIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS 169 (585)
T ss_pred EEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh
Confidence 12222222233333 3445544332111 01111110 0 0 555655555443322
Q ss_pred CCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHh
Q 042891 273 TLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 327 (423)
Q Consensus 273 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 327 (423)
-...+.+..++.++....+.+.+....... -.+....|++.++|.+..+..
T Consensus 170 R~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 170 RCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred ccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 224688889999988888887764322111 136678999999998865443
No 71
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.31 E-value=0.00021 Score=68.39 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=41.8
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
+++|.++.++++++++.......+...+++.++|++|+||||||..+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999976432123356799999999999999999998844
No 72
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.28 E-value=0.0074 Score=56.30 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=54.8
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc------ceeeEEeCCcCcHHHHHHHHHHH
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD------LKSWTCVSEDFDIIWVTKSILKS 241 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~------~~~wv~vs~~~~~~~~~~~il~~ 241 (423)
.++.+.++|..+ .....+-+.|||.+|+|||++++++....- ..++ .++.|.+...++...+...|+.+
T Consensus 45 ~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp--~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 45 ALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHP--PQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred HHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCC--CCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 355566656543 345667899999999999999999986321 1221 46667777888999999999999
Q ss_pred hhcCC
Q 042891 242 IASDQ 246 (423)
Q Consensus 242 l~~~~ 246 (423)
++.+.
T Consensus 120 lgaP~ 124 (302)
T PF05621_consen 120 LGAPY 124 (302)
T ss_pred hCccc
Confidence 98765
No 73
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.24 E-value=0.00024 Score=57.58 Aligned_cols=22 Identities=45% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
||.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 74
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0039 Score=64.66 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=86.9
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc------------------------
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH------------------------ 214 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~------------------------ 214 (423)
-.+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.....
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 3478999999999999885422 23468899999999999998877632111
Q ss_pred ----cCccceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCCc----------------ee-eEeccCC
Q 042891 215 ----NHFDLKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLNL----------------LQ-IVITTRN 264 (423)
Q Consensus 215 ----~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~~----------------l~-ilvTTR~ 264 (423)
.+|+...+ .......+.+ .+++++.+..... ++.+.+.. .. |++|++.
T Consensus 90 ~~~g~~~n~~~~-d~~s~~~vd~-Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 90 FDAGTSLNISEF-DAASNNSVDD-IRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HhccCCCCeEEe-cccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 12222111 1112222333 2344444421110 01111110 01 5667665
Q ss_pred HHHHhhc-CCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh
Q 042891 265 LCVVEKT-GTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL 323 (423)
Q Consensus 265 ~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl 323 (423)
..+...+ +....+++.+++.++....+.+.+-..+..- -.+.+..|++.++|.+-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHH
Confidence 5555432 2235799999999998877776543222111 13667889999999554
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.0062 Score=62.75 Aligned_cols=163 Identities=16% Similarity=0.076 Sum_probs=92.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccC-------------------ccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH-------------------FDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-------------------F~~~ 220 (423)
.+++|-+..++.|.+.+..+. -...+-++|+.|+||||+|+.+.+....... ...+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 467898888888888885422 2457889999999999999998874321110 0112
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhcC-C
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKTG-T 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~-~ 273 (423)
+++..+....+.. .+.|.+.+..... ++.+.+. ... |++||....+...+. -
T Consensus 91 ~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR 169 (624)
T PRK14959 91 VEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR 169 (624)
T ss_pred EEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh
Confidence 3343222222322 2233333221110 0111110 111 555665555543322 1
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCch-hhhHhhhhhh
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLP-LVAKSLGGLL 332 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-lai~~~g~~L 332 (423)
...+++++++.++....+...+........ .+....|++.++|.+ .|+..+..++
T Consensus 170 cq~i~F~pLs~~eL~~~L~~il~~egi~id----~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 170 CQHFTFTRLSEAGLEAHLTKVLGREGVDYD----PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhccccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 247899999999999888876643322111 356788899999954 6776665444
No 76
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0024 Score=60.26 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=96.2
Q ss_pred ceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhccc---------------------
Q 042891 161 KVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR--------------------- 212 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--------------------- 212 (423)
.+=|-++.+++|.+...-+=. -+-+.++-|.++|++|.|||-||++|+|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaR 231 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGAR 231 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchH
Confidence 455678888888776532200 1234567789999999999999999999541
Q ss_pred -cccCc-------cceeeEEe----------CCcCcHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHHhh--cC
Q 042891 213 -VHNHF-------DLKSWTCV----------SEDFDIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVVEK--TG 272 (423)
Q Consensus 213 -~~~~F-------~~~~wv~v----------s~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~~~--~~ 272 (423)
+++-| .+++|+.- +..-...++++.+++-|..- ++.+....++||..|-...+.+- +.
T Consensus 232 lVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql--DGFD~~~nvKVI~ATNR~D~LDPALLR 309 (406)
T COG1222 232 LVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL--DGFDPRGNVKVIMATNRPDILDPALLR 309 (406)
T ss_pred HHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc--cCCCCCCCeEEEEecCCccccChhhcC
Confidence 23333 46777751 11123445666555554322 24455667778887765554332 12
Q ss_pred C---CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCch----hhhHhhhhhh
Q 042891 273 T---LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLP----LVAKSLGGLL 332 (423)
Q Consensus 273 ~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP----lai~~~g~~L 332 (423)
+ +..++++.-+.+.-.++|+-|+-. -+...+-+ .+.+++.|.|.- -|+.+=|+++
T Consensus 310 PGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 310 PGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVD----LELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 2 356778755666667788877632 22222223 345667777654 3344445554
No 77
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.17 E-value=0.0007 Score=66.72 Aligned_cols=51 Identities=22% Similarity=0.165 Sum_probs=38.3
Q ss_pred CceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|++..+++|.+.+..+-. -+-...+-|.++|++|+|||+||+.+++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 4788999999999887632110 01134567899999999999999999884
No 78
>PRK07261 topology modulation protein; Provisional
Probab=97.16 E-value=0.00083 Score=58.19 Aligned_cols=51 Identities=27% Similarity=0.251 Sum_probs=31.6
Q ss_pred EEEEEccCCccHHHHHHHHHhccccc-cCccceeeEEeCCcCcHHHHHHHHH
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVH-NHFDLKSWTCVSEDFDIIWVTKSIL 239 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~il 239 (423)
.|.|+|++|+||||||+.+.....+. -+.|...|-......+..++...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 53 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADIS 53 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHH
Confidence 48999999999999999997643221 2345566643323333444444433
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.013 Score=57.11 Aligned_cols=47 Identities=23% Similarity=0.252 Sum_probs=37.6
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+++|.+..++.|.+.+..+. -...+-++|+.|+||+|+|..+.+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999886432 244789999999999999977655
No 80
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.011 Score=61.88 Aligned_cols=153 Identities=14% Similarity=0.106 Sum_probs=87.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc-----------------Cccceee
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN-----------------HFDLKSW 222 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-----------------~F~~~~w 222 (423)
.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+..--.. +++ +++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEE
Confidence 468899999999999996432 245678999999999999998875321100 111 122
Q ss_pred EEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------c-eeeEeccCCHHHHhhcC-CCC
Q 042891 223 TCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------L-LQIVITTRNLCVVEKTG-TLP 275 (423)
Q Consensus 223 v~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~-l~ilvTTR~~~v~~~~~-~~~ 275 (423)
+.......+.. .+++...+..... ++.+.+. . +-|++||....+...+. -..
T Consensus 92 idaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq 170 (725)
T PRK07133 92 MDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQ 170 (725)
T ss_pred EeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhce
Confidence 22222122222 3444444332111 0111110 0 01777777666654322 224
Q ss_pred cccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh
Q 042891 276 AYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL 323 (423)
Q Consensus 276 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl 323 (423)
.+++.+++.++....+...+-..+-.. -...+..|++.++|.+-
T Consensus 171 ~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR 214 (725)
T PRK07133 171 RFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLR 214 (725)
T ss_pred eEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHH
Confidence 799999999999888877543222111 13557789999988664
No 81
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.07 E-value=0.0049 Score=55.67 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=68.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCc--cceeeEEeCCcCcHHHHHHHHHHHh------------hcCCCCCcC
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF--DLKSWTCVSEDFDIIWVTKSILKSI------------ASDQLVDDR 251 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~il~~l------------~~~~~~~~~ 251 (423)
....+-|+|..|+|||.|.+.+++.. .... ..+++++.. ++...+...+ ..-+.--.+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~--~~~~~~~~v~y~~~~------~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iD 104 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEA--QKQHPGKRVVYLSAE------EFIREFADALRDGEIEEFKDRLRSADLLIID 104 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHH--HHHCTTS-EEEEEHH------HHHHHHHHHHHTTSHHHHHHHHCTSSEEEEE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH--HhccccccceeecHH------HHHHHHHHHHHcccchhhhhhhhcCCEEEEe
Confidence 44567899999999999999999943 3222 124454322 2222222222 111100001
Q ss_pred CCCce----------------------eeEeccCC---------HHHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCC
Q 042891 252 DLNLL----------------------QIVITTRN---------LCVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKD 300 (423)
Q Consensus 252 ~~~~l----------------------~ilvTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 300 (423)
+++.+ +||+|+.. +.+...+...-.+++++++.++..+++.+.+-...-
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~ 184 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI 184 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT-
T ss_pred cchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC
Confidence 11111 18888854 233444444457889999999999999988743222
Q ss_pred CCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 301 FSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 301 ~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
. --+++..-|++.+.+..-.+.
T Consensus 185 ~----l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 185 E----LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp -----S-HHHHHHHHHHTTSSHHHHH
T ss_pred C----CcHHHHHHHHHhhcCCHHHHH
Confidence 1 124667777777776554443
No 82
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.0094 Score=58.39 Aligned_cols=154 Identities=13% Similarity=0.152 Sum_probs=84.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc------ccCcccee-eEEeCCcCcHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV------HNHFDLKS-WTCVSEDFDII 232 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------~~~F~~~~-wv~vs~~~~~~ 232 (423)
.+++|.+...+.+.+.+..+. -.+.+-++|++|+||||+|+.+.+...- ...|...+ -+......+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 467899999999999985432 3458889999999999999998774211 01122211 11111112222
Q ss_pred HHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhc-CCCCcccCCCCChh
Q 042891 233 WVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKT-GTLPAYPLKELSNN 285 (423)
Q Consensus 233 ~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~-~~~~~~~l~~L~~~ 285 (423)
-..++++.+..... ++.+.+. ... |+.|+....+.... +....+++.+++.+
T Consensus 92 -~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~ 170 (367)
T PRK14970 92 -DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIK 170 (367)
T ss_pred -HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHH
Confidence 22333333211100 0001100 011 44454443333221 22246889999999
Q ss_pred hHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh
Q 042891 286 DCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL 323 (423)
Q Consensus 286 ~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl 323 (423)
+....+...+...+-.-. .+....|++.++|.+-
T Consensus 171 ~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr 204 (367)
T PRK14970 171 DIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHH
Confidence 998888876643221111 3677888888888654
No 83
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.05 E-value=0.0093 Score=52.41 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=31.5
Q ss_pred CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhh
Q 042891 275 PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLV 324 (423)
Q Consensus 275 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPla 324 (423)
..+.+.+++.++..+.+... + .+ .+.+..|++.++|.|..
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~--g---i~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ--G---IS-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc--C---CC-----HHHHHHHHHHcCCCccc
Confidence 47999999999998888776 1 11 35688999999998853
No 84
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.015 Score=58.96 Aligned_cols=158 Identities=13% Similarity=0.045 Sum_probs=87.8
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc-------------------ccCccce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV-------------------HNHFDLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------------~~~F~~~ 220 (423)
.+++|-+.....|.+++.... -...+.++|+.|+||||+|+.+.....- ...|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999999999995432 2346778999999999999988663210 0112223
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCC-----------------CceeeEeccCCHHHHhhc-CC
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDL-----------------NLLQIVITTRNLCVVEKT-GT 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~-----------------~~l~ilvTTR~~~v~~~~-~~ 273 (423)
+.+..+.+..+.. .+.|...+..... ++.+.+ ..+-|+.||+...+...+ +.
T Consensus 91 ~eidaas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR 169 (486)
T PRK14953 91 IEIDAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR 169 (486)
T ss_pred EEEeCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh
Confidence 3343333232222 2233333221110 011111 001166676655544322 22
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHh
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 327 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 327 (423)
...+.+.+++.++....+...+-..+-.. -.+....|++.++|.+-.+..
T Consensus 170 c~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 170 CQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 24788999999998888877653222111 135567888899997654433
No 85
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.00079 Score=61.04 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=34.7
Q ss_pred ecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 165 RDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 165 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
|..-+++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5566778888886532 346789999999999999999999873
No 86
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00051 Score=70.12 Aligned_cols=51 Identities=27% Similarity=0.445 Sum_probs=40.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.+-+|.++.+++|++.|.-......-.-+++++||++|+|||+|++.++.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH
Confidence 456799999999999998543221223447999999999999999999998
No 87
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.00 E-value=0.0036 Score=67.64 Aligned_cols=55 Identities=20% Similarity=0.101 Sum_probs=44.2
Q ss_pred CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhc
Q 042891 275 PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRV 334 (423)
Q Consensus 275 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~ 334 (423)
..+.|.||+..+...|.......... ...+....|.++..|.|+-+.-+-..|..
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCTKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 57889999999999999877533222 23477899999999999999988887766
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.98 E-value=0.0042 Score=66.40 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=37.3
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.+++.++..|... ...-+.++|++|+|||++|+.+.+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999988643 2334579999999999999999874
No 89
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.015 Score=60.21 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=88.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc--------------------Ccc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN--------------------HFD 218 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~--------------------~F~ 218 (423)
-.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+..--.. +++
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d 89 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD 89 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 3478999999999999885432 235678999999999999998876321111 111
Q ss_pred ceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC-----c-----------ee-eEeccCCHHHHhhcC
Q 042891 219 LKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN-----L-----------LQ-IVITTRNLCVVEKTG 272 (423)
Q Consensus 219 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~-----~-----------l~-ilvTTR~~~v~~~~~ 272 (423)
.+.+....+..+.+ .++|...+..... ++.+.+. . .. |++||....+...+.
T Consensus 90 -~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~ 167 (576)
T PRK14965 90 -VFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITIL 167 (576)
T ss_pred -eeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHH
Confidence 11222222223333 2444444322111 0111111 0 01 667777666654432
Q ss_pred C-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCch-hhhHhh
Q 042891 273 T-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLP-LVAKSL 328 (423)
Q Consensus 273 ~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP-lai~~~ 328 (423)
. ...+++.+++.++....+...+-..+-.. -.+....|++.++|.. .|+..+
T Consensus 168 SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 168 SRCQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 24788999999888877776543222111 1355677888888855 344333
No 90
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.016 Score=60.47 Aligned_cols=155 Identities=13% Similarity=0.117 Sum_probs=90.8
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccc---------------------cccCcc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR---------------------VHNHFD 218 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~---------------------~~~~F~ 218 (423)
.+++|.+..++.|.+++..+. -...+-++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 478999999999999985432 245688999999999999988766321 112343
Q ss_pred ceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCCc-----e------------eeEeccCCHHHHhhcC
Q 042891 219 LKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLNL-----L------------QIVITTRNLCVVEKTG 272 (423)
Q Consensus 219 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~~-----l------------~ilvTTR~~~v~~~~~ 272 (423)
. ..+..+....+.+ .++++.++..... ++.+.+.. + =|++||....+...+.
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~ 169 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTIL 169 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHH
Confidence 2 2233333333333 3344444322111 01111110 0 0666776666554432
Q ss_pred C-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 273 T-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 273 ~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
. ...+++.+++.++....+.+.+-..+-. --.+.+..|++.++|-.--+
T Consensus 170 SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 170 SRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred hhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 2 3579999999999988888765332211 11356788999999866433
No 91
>PRK06620 hypothetical protein; Validated
Probab=96.93 E-value=0.021 Score=51.38 Aligned_cols=122 Identities=12% Similarity=0.011 Sum_probs=66.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccc-------------eeeEEeCCcCcHHHHHHHHHHHhhcCCCCCcCCCC
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDL-------------KSWTCVSEDFDIIWVTKSILKSIASDQLVDDRDLN 254 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-------------~~wv~vs~~~~~~~~~~~il~~l~~~~~~~~~~~~ 254 (423)
+.+-|+|++|+|||+|++.+++... ..|.. .+.+.--+.+.- ..+-.++..+....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~~~~~~~~~~~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g-------- 113 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--AYIIKDIFFNEEILEKYNAFIIEDIENWQE-PALLHIFNIINEKQ-------- 113 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--CEEcchhhhchhHHhcCCEEEEeccccchH-HHHHHHHHHHHhcC--------
Confidence 6789999999999999999887532 11100 011110011100 11112222221110
Q ss_pred ceeeEeccCCHH-------HHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 255 LLQIVITTRNLC-------VVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 255 ~l~ilvTTR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
-+||+|++... +..++....++++++++.++-..++.+.+.... .. --+++..-|++.+.|---.+
T Consensus 114 -~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~---l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 114 -KYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS-VT---ISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred -CEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHccCCHHHH
Confidence 12677775322 333344445799999999998888887764211 11 11467788888887754433
No 92
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0025 Score=65.09 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=43.1
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-+.+-+|+++-+++|++++.-....++-+-.+++.+|++|+|||++|+.|+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 3567899999999999998654433445668999999999999999999987
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.017 Score=60.15 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=88.3
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc-----c----------------
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-----D---------------- 218 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-----~---------------- 218 (423)
.+++|.+.....|..++.... -...+-++|+.|+||||+|+.+.+..-..... .
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCc
Confidence 468899999999999886432 23467899999999999999987743111000 0
Q ss_pred ceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCCc----------------ee-eEeccCCHHHHhhcC
Q 042891 219 LKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLNL----------------LQ-IVITTRNLCVVEKTG 272 (423)
Q Consensus 219 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~~----------------l~-ilvTTR~~~v~~~~~ 272 (423)
.++.+.......+ +-.++++..+..... ++.+.+.. .. |++|+....+...+.
T Consensus 91 D~~ei~~~~~~~v-d~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 91 DVIEIDAASNTGV-DNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred cEEEEeccccCCH-HHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH
Confidence 1112222222222 333555554432211 01111110 00 566665544443322
Q ss_pred C-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHh
Q 042891 273 T-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 327 (423)
Q Consensus 273 ~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 327 (423)
. -..+.+..++.++....+.+.+-....... .+....|++.++|.+..+..
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHH
Confidence 1 246788889998888877766533221111 25578899999997754443
No 94
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.90 E-value=0.009 Score=59.98 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=46.0
Q ss_pred eEeccCCH---------HHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 258 IVITTRNL---------CVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 258 ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
||+|+... .+...+...-.+.+++++.++-.+++.+++-... .. ..--+++..-|++.+.|.|-.+.-+
T Consensus 242 iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~ga 319 (450)
T PRK14087 242 LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGS 319 (450)
T ss_pred EEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHH
Confidence 77776532 2233333445788999999999999998874321 10 0122577889999999988666554
Q ss_pred h
Q 042891 329 G 329 (423)
Q Consensus 329 g 329 (423)
.
T Consensus 320 L 320 (450)
T PRK14087 320 V 320 (450)
T ss_pred H
Confidence 4
No 95
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.86 E-value=0.0027 Score=63.09 Aligned_cols=51 Identities=25% Similarity=0.193 Sum_probs=36.9
Q ss_pred CceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..+++|.+.+.-+-. -+-....-+.++|++|+|||+||+.+++.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3578899999888887632100 01123456889999999999999999984
No 96
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0032 Score=61.23 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=57.7
Q ss_pred eeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc-c-eeeEEeCCcCcHHHHHHHHH
Q 042891 162 VYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-L-KSWTCVSEDFDIIWVTKSIL 239 (423)
Q Consensus 162 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~-~~wv~vs~~~~~~~~~~~il 239 (423)
+.+|+.+++++...|...-. +....-+.|+|.+|.|||+.++.|... +..... . ++.|+.-...+...++..|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 88999999999988764321 122233899999999999999999984 333321 1 67777777777888888888
Q ss_pred HHhh
Q 042891 240 KSIA 243 (423)
Q Consensus 240 ~~l~ 243 (423)
..++
T Consensus 95 ~~~~ 98 (366)
T COG1474 95 NKLG 98 (366)
T ss_pred HHcC
Confidence 8774
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.016 Score=58.23 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=36.8
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|.+..+..|.+++..+. -...+-++|+.|+||||+|+.+.+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk 61 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAK 61 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999985422 235788999999999999998866
No 98
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.023 Score=55.58 Aligned_cols=109 Identities=17% Similarity=0.071 Sum_probs=61.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHH----------HhhcCCCCCcCCC--
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILK----------SIASDQLVDDRDL-- 253 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~----------~l~~~~~~~~~~~-- 253 (423)
....+-|+|..|.|||.|++.+.|. ...+......+.++...=..++...+.. ++..-..+|...+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 4678999999999999999999994 4444443323332221101111111111 1111101111000
Q ss_pred ------------C-----ceeeEeccCC---------HHHHhhcCCCCcccCCCCChhhHHHHHHHhhc
Q 042891 254 ------------N-----LLQIVITTRN---------LCVVEKTGTLPAYPLKELSNNDCLSVFTQHSL 296 (423)
Q Consensus 254 ------------~-----~l~ilvTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 296 (423)
+ .-+||+|++. +.+..++...-++++.+++.+....++.+.+.
T Consensus 190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 0 0138888854 33444444456899999999999999988764
No 99
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.78 E-value=0.012 Score=64.09 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=36.9
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.++++++..|... ...-+.++|++|+|||++|..+.++
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 35999999999999999643 2334558999999999999998874
No 100
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.72 E-value=0.0072 Score=64.26 Aligned_cols=45 Identities=27% Similarity=0.410 Sum_probs=36.8
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.++++++..|.... ..-+.++|++|+|||+||+.+.+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999987532 223468999999999999999874
No 101
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.72 E-value=0.001 Score=67.12 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=39.3
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+++|.++.+++|++.|...-..-+..-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999432110123457999999999999999999987
No 102
>PRK07667 uridine kinase; Provisional
Probab=96.69 E-value=0.0026 Score=56.23 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 566777775433 34589999999999999999999873
No 103
>CHL00181 cbbX CbbX; Provisional
Probab=96.68 E-value=0.021 Score=53.74 Aligned_cols=49 Identities=27% Similarity=0.303 Sum_probs=30.8
Q ss_pred ceeeecchHHHHHHHH---hcC------CCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 161 KVYGRDKEKEETVELL---LSD------DLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L---~~~------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.++|.+..+++|.++. .-. +.........+.++|++|+||||+|+.+++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 4677766666554432 111 110112233588899999999999999976
No 104
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.67 E-value=0.016 Score=58.12 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-+.|+|+.|+|||+|++.+.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 456889999999999999999984
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.033 Score=57.42 Aligned_cols=156 Identities=17% Similarity=0.067 Sum_probs=89.0
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc--------------------cCccc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH--------------------NHFDL 219 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~ 219 (423)
.+++|-+..++.|.+++..+. -...+-++|+.|+||||+|+.+.+..-.. .+++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~d- 89 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLD- 89 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCC-
Confidence 478999999999999996432 34578899999999999999987742111 1222
Q ss_pred eeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC------------c----ee-eEeccCCHHHHhhcCC
Q 042891 220 KSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN------------L----LQ-IVITTRNLCVVEKTGT 273 (423)
Q Consensus 220 ~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~------------~----l~-ilvTTR~~~v~~~~~~ 273 (423)
.+++....+..+.++ +++...+..... ++.+.+. . .. |++||....+...+..
T Consensus 90 v~~idgas~~~vddI-r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 90 VIEIDGASNTSVQDV-RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred eEEecCcccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 123322222333333 233332221110 0111111 0 11 5566665555433222
Q ss_pred -CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 274 -LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 274 -~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
...+++.+++.++-.+.+...+....-. --.+....|++.++|.+-.+.
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHH
Confidence 2468899999999888887766432211 123667788999999775443
No 106
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.61 E-value=0.015 Score=57.34 Aligned_cols=51 Identities=29% Similarity=0.285 Sum_probs=37.3
Q ss_pred CceeeecchHHHHHHHHhcC----CC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSD----DL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..+++|.+.+..+ +. -+-...+-|.++|++|+|||+||+.+++.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 46889988888887765321 00 01234567899999999999999999884
No 107
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.039 Score=56.20 Aligned_cols=157 Identities=14% Similarity=0.069 Sum_probs=86.6
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc--c-c---------------Ccc-ce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV--H-N---------------HFD-LK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~--~-~---------------~F~-~~ 220 (423)
.+++|-+...+.|...+..+. -..+.-++|+.|+||||+|+.+.+..-- . . .+. .+
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 468998888899999885332 2447789999999999999987653210 0 0 011 12
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCC-C--------CCcCCCC----------------cee-eEeccCCHHHHhhcCC-
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQ-L--------VDDRDLN----------------LLQ-IVITTRNLCVVEKTGT- 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~-~--------~~~~~~~----------------~l~-ilvTTR~~~v~~~~~~- 273 (423)
+.+..+.+..+.+ .++++....... . ++.+.+. ... |++|+....+...+..
T Consensus 89 ~eldaas~~gId~-IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR 167 (535)
T PRK08451 89 IEMDAASNRGIDD-IRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR 167 (535)
T ss_pred EEeccccccCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh
Confidence 2233222222333 334444322111 0 0111111 011 5555543333322211
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhH
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
...+++.+++.++....+...+-..+-.. -.+....|++.++|.+--+.
T Consensus 168 c~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 168 TQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTL 216 (535)
T ss_pred ceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHH
Confidence 24789999999998888876653322111 14667889999999884443
No 108
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.58 E-value=0.0017 Score=57.55 Aligned_cols=21 Identities=48% Similarity=0.618 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
||+|.|++|+||||||+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 109
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.58 E-value=0.043 Score=56.66 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=87.3
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc--------------------cCcc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH--------------------NHFD 218 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~ 218 (423)
-.+++|.+...+.|.+++.... -...+-++|+.|+||||+|+.+.+..-.. .+++
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d 89 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD 89 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC
Confidence 3478999999999999996532 24567789999999999999886532110 1122
Q ss_pred ceeeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------c-eeeEeccCCHHHHhhcC
Q 042891 219 LKSWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------L-LQIVITTRNLCVVEKTG 272 (423)
Q Consensus 219 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~-l~ilvTTR~~~v~~~~~ 272 (423)
++.+..+.+..+. -.+++...+..... ++.+.+. . +=|+.||....+...+.
T Consensus 90 -v~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 90 -VIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred -eEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 2233332222222 22334443321110 0111110 0 01666776555443322
Q ss_pred -CCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 273 -TLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 273 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
-...+++.+++.++....+...+-..+-.. -.+....|++.++|.+.-+
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 224688899999998888877653222111 1355678888888876533
No 110
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.58 E-value=0.0021 Score=57.65 Aligned_cols=26 Identities=38% Similarity=0.574 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+..+|+|.|.+|+|||||++.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999874
No 111
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.002 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.423 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.--|.|.||+|+|||||++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3468999999999999999999843
No 112
>PTZ00301 uridine kinase; Provisional
Probab=96.54 E-value=0.003 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.535 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998875
No 113
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.51 E-value=0.052 Score=55.93 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=38.1
Q ss_pred eEeccCCH---------HHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCc
Q 042891 258 IVITTRNL---------CVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGL 321 (423)
Q Consensus 258 ilvTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 321 (423)
|||||... .+...+...-++++...+.+.-..++.+++-... ... -.++..-|++.+.+.
T Consensus 413 IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~-l~l---~~eVi~yLa~r~~rn 481 (617)
T PRK14086 413 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-LNA---PPEVLEFIASRISRN 481 (617)
T ss_pred EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-CCC---CHHHHHHHHHhccCC
Confidence 78888652 2333444445789999999999999998874322 111 135566666666544
No 114
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.51 E-value=0.002 Score=52.51 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 115
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.51 E-value=0.016 Score=62.43 Aligned_cols=52 Identities=29% Similarity=0.453 Sum_probs=38.7
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+..++|.+..++.|.+++............++.++|++|+|||++|+.+.+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999988764321101223358999999999999999999874
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.48 E-value=0.025 Score=56.74 Aligned_cols=123 Identities=17% Similarity=0.082 Sum_probs=67.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccC-cc-ceeeEEeCCcCcHHHHHHHHHHHhhc-------------CC---CC
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNH-FD-LKSWTCVSEDFDIIWVTKSILKSIAS-------------DQ---LV 248 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~-~~~wv~vs~~~~~~~~~~~il~~l~~-------------~~---~~ 248 (423)
..-+-|+|.+|+|||+|++.+++. +... .. .++|++..+ +..++...+.. .+ .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~~~------f~~~~~~~~~~~~~~~f~~~~~~~~dvLlID 201 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEK------FLNDLVDSMKEGKLNEFREKYRKKVDVLLID 201 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEHHH------HHHHHHHHHhcccHHHHHHHHHhcCCEEEEe
Confidence 445999999999999999999994 3332 22 345555432 22222111110 00 00
Q ss_pred CcCCC-------C------------ceeeEeccC-CHHHH--------hhcCCCCcccCCCCChhhHHHHHHHhhcCCCC
Q 042891 249 DDRDL-------N------------LLQIVITTR-NLCVV--------EKTGTLPAYPLKELSNNDCLSVFTQHSLGEKD 300 (423)
Q Consensus 249 ~~~~~-------~------------~l~ilvTTR-~~~v~--------~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~ 300 (423)
+...+ + ..+||+||. .+.-. ..+.....+.+++.+.+.-..++.+.+-...-
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~ 281 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG 281 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC
Confidence 11100 0 012777774 33221 12233347789999999999999888643221
Q ss_pred CCCCccHHHHHHHHHHHcCCc
Q 042891 301 FSTHPSLKEIGEKIVKKCNGL 321 (423)
Q Consensus 301 ~~~~~~l~~~~~~I~~~c~Gl 321 (423)
.-+ +++...|++.+.|.
T Consensus 282 ~l~----~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 282 ELP----EEVLNFVAENVDDN 298 (440)
T ss_pred CCC----HHHHHHHHhccccC
Confidence 111 35667777777664
No 117
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.46 E-value=0.043 Score=55.32 Aligned_cols=154 Identities=15% Similarity=0.013 Sum_probs=80.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCc--cceeeEEeCCcCcHHHHHH--------HHHHHhhcCC---CCCcCC
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF--DLKSWTCVSEDFDIIWVTK--------SILKSIASDQ---LVDDRD 252 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~--------~il~~l~~~~---~~~~~~ 252 (423)
...-+.|+|++|+|||+|++.+.+. +...+ -.+++++... + ..++.. .+...+...+ .++...
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~ 222 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSEK-F-TNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQF 222 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHHH-H-HHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhh
Confidence 3456899999999999999999984 33333 2244554332 1 011111 1111111100 001100
Q ss_pred C-------------------CceeeEeccCCHH---------HHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCC
Q 042891 253 L-------------------NLLQIVITTRNLC---------VVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTH 304 (423)
Q Consensus 253 ~-------------------~~l~ilvTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~ 304 (423)
+ ...++|+||.... +...+.....+++++.+.++-..++.+.+-...-..
T Consensus 223 l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l-- 300 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDL-- 300 (450)
T ss_pred hcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCC--
Confidence 0 0112677665421 223333335788999999999999998874322111
Q ss_pred ccHHHHHHHHHHHcCCchhhh----Hhhhh---hhhcCCChhHHHHHHcc
Q 042891 305 PSLKEIGEKIVKKCNGLPLVA----KSLGG---LLRVKYDPNDWEDVHNC 347 (423)
Q Consensus 305 ~~l~~~~~~I~~~c~GlPlai----~~~g~---~L~~~~~~~~W~~~~~~ 347 (423)
-+++..-|++.+.|..-.+ ..+.. ......+....+.++..
T Consensus 301 --~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 301 --PDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred --CHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 1366778888888765432 22221 11222456666666654
No 118
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0035 Score=54.45 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=27.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
...+|.++|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999983 44445555555
No 119
>PRK08233 hypothetical protein; Provisional
Probab=96.45 E-value=0.0026 Score=55.47 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999874
No 120
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.43 E-value=0.0026 Score=68.82 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=37.3
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+++++++++.|... ...-+.++|++|+|||++|..++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999643 2234569999999999999998874
No 121
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.43 E-value=0.023 Score=56.46 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=32.3
Q ss_pred CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhh
Q 042891 275 PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLV 324 (423)
Q Consensus 275 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPla 324 (423)
..+.+++.+.++-..++.+.+-.....- -+++...|++.+.|.+-.
T Consensus 261 ~~v~i~~pd~~~r~~il~~~~~~~~~~l----~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 261 LVVDIEPPDLETRLAILQKKAEEEGLEL----PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHhcCCCHHH
Confidence 4688899999999999998874322111 146777888888876543
No 122
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.43 E-value=0.0037 Score=52.37 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=32.6
Q ss_pred EEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhhcC
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIASD 245 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~~~ 245 (423)
+|.|-|++|+||||+|+.+.++.-... .+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-------------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-------------eeccHHHHHHHHHcCCC
Confidence 689999999999999999998532221 23456777787776654
No 123
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.42 E-value=0.0027 Score=56.78 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|++|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 124
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.018 Score=57.14 Aligned_cols=52 Identities=33% Similarity=0.348 Sum_probs=37.3
Q ss_pred Cceeeec---chHHHHHHHHhcCCC---CCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 160 AKVYGRD---KEKEETVELLLSDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 160 ~~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.++-|-| .++++|++.|.++.. -+..-++-|.++|++|.|||-||+.|....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 3455665 567778888866431 122335679999999999999999998754
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.42 E-value=0.0041 Score=57.85 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=33.6
Q ss_pred ceeeecchHHHHHHHHhc---------CCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 161 KVYGRDKEKEETVELLLS---------DDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.++|.+..++.|.+.... .+....+...-+.++|++|+||||+|+.+++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 478888777666543211 1111234456788999999999999999976
No 126
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=96.37 E-value=0.0079 Score=55.50 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-hhcccCChHHHHHHHHHHHhhhhccccccc
Q 042891 6 VSSELLLKKLASKAILLFARQKQSQADLMKWKKTLVKINEVLDDA-DEKQNTDQSVKMWLGDLQNLAYDRNLMFQG 80 (423)
Q Consensus 6 ~~v~~l~~kl~s~~~~e~~~~~~v~~~l~~L~~~l~~i~~~l~~a-~~~~~~~~~v~~Wl~~lr~~ayd~e~~~~~ 80 (423)
+.|+.++++|-.+......++.-++.+++-++.+|+++|.||+.. +..+..-+..+.++.++...||++||. .+
T Consensus 296 GyVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYV-VD 370 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYV-VD 370 (402)
T ss_pred cHHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeee-ee
Confidence 578888999988877777777778999999999999999999986 443333334899999999999999977 54
No 127
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.34 E-value=0.0058 Score=63.78 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=38.0
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR 212 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~ 212 (423)
+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 3688999999988887742 2345799999999999999999987543
No 128
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.33 E-value=0.0031 Score=52.58 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 129
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.32 E-value=0.015 Score=53.80 Aligned_cols=153 Identities=15% Similarity=0.107 Sum_probs=88.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceee-EEeCCcCcHH--HH-
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSW-TCVSEDFDII--WV- 234 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~--~~- 234 (423)
..+++|-+..+.-|.+.+.. ...+....+|++|.|||+-|..+....--.+.|.+++- .++|..-... ..
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 35788989889999998864 35789999999999999988877663322456766553 3444422111 00
Q ss_pred ---HHHHHHHhhcCC---C--------CCcCC-----CCcee------------eEeccCCHHHHhhcCCC-CcccCCCC
Q 042891 235 ---TKSILKSIASDQ---L--------VDDRD-----LNLLQ------------IVITTRNLCVVEKTGTL-PAYPLKEL 282 (423)
Q Consensus 235 ---~~~il~~l~~~~---~--------~~~~~-----~~~l~------------ilvTTR~~~v~~~~~~~-~~~~l~~L 282 (423)
+..+........ + ++-+. +..++ |+||+--..+...+.+. ..+..++|
T Consensus 109 ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L 188 (346)
T KOG0989|consen 109 IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKL 188 (346)
T ss_pred hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCc
Confidence 001111110000 0 00000 01111 77776544443332222 36889999
Q ss_pred ChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCc
Q 042891 283 SNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGL 321 (423)
Q Consensus 283 ~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~Gl 321 (423)
..++..+-+...+-.++-... ....+.|++.++|-
T Consensus 189 ~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 189 KDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGD 223 (346)
T ss_pred chHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCc
Confidence 999999988888754433222 35678889999884
No 130
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.31 E-value=0.0032 Score=45.49 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 131
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.26 E-value=0.005 Score=50.41 Aligned_cols=37 Identities=30% Similarity=0.240 Sum_probs=26.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeC
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVS 226 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 226 (423)
..+.|+|++|+||||+++.+.+.. .......+.++.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCE
Confidence 578999999999999999998843 2222234445443
No 132
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.26 E-value=0.013 Score=55.97 Aligned_cols=77 Identities=23% Similarity=0.258 Sum_probs=62.4
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHH
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 238 (423)
++.+.+|+..+..+..++...+ ..-+..|-|+|-.|.|||.+.+++.+.. =-..+|+++-..|+...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~---~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNS---CTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCC---cccceeEEEeccCCCchhHHHHHHHhhc-----CCcceeeehHHhccHHHHHHHH
Confidence 5678899999999999885432 1124456899999999999999999854 2246899999999999999999
Q ss_pred HHHhh
Q 042891 239 LKSIA 243 (423)
Q Consensus 239 l~~l~ 243 (423)
+.+++
T Consensus 77 L~~~~ 81 (438)
T KOG2543|consen 77 LNKSQ 81 (438)
T ss_pred HHHhc
Confidence 99885
No 133
>PRK06547 hypothetical protein; Provisional
Probab=96.25 E-value=0.0069 Score=52.44 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....+|+|.|++|+||||||+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999874
No 134
>PRK06762 hypothetical protein; Provisional
Probab=96.25 E-value=0.0038 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 135
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.21 E-value=0.0038 Score=51.02 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEccCCccHHHHHHHHHhcc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~ 211 (423)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5789999999999999999953
No 136
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.17 E-value=0.081 Score=51.75 Aligned_cols=82 Identities=7% Similarity=0.026 Sum_probs=55.1
Q ss_pred eEeccCCHHHHhh----cC--CCCcccCCCCChhhHHHHHHHhhcCCCCC------------CC----CccHHHHHHHHH
Q 042891 258 IVITTRNLCVVEK----TG--TLPAYPLKELSNNDCLSVFTQHSLGEKDF------------ST----HPSLKEIGEKIV 315 (423)
Q Consensus 258 ilvTTR~~~v~~~----~~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~------------~~----~~~l~~~~~~I~ 315 (423)
||++|-+...... +. ..+.+.|...+++.|.++...+.-..... .. ......-....+
T Consensus 186 VIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i 265 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECI 265 (431)
T ss_pred EEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHH
Confidence 7777766544332 21 22578899999999999998886432111 00 012444556788
Q ss_pred HHcCCchhhhHhhhhhhhcCCChh
Q 042891 316 KKCNGLPLVAKSLGGLLRVKYDPN 339 (423)
Q Consensus 316 ~~c~GlPlai~~~g~~L~~~~~~~ 339 (423)
..+||--.=+..+++.++...+++
T Consensus 266 ~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 266 EPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHcCCcHHHHHHHHHHHHcCCCHH
Confidence 899999999999999998875543
No 137
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.16 E-value=0.049 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.4
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-+.++|++|+|||++|+.+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999977665
No 138
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.14 E-value=0.009 Score=53.43 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=36.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTK 236 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 236 (423)
.-.++.|+|++|+|||+|+.++... ....-..++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4579999999999999999998764 233456789998876 66555443
No 139
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.14 E-value=0.0045 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 140
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0051 Score=54.62 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+.+|||.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999883
No 141
>PRK03839 putative kinase; Provisional
Probab=96.06 E-value=0.0049 Score=53.79 Aligned_cols=22 Identities=41% Similarity=0.744 Sum_probs=20.3
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|+|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 142
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.06 E-value=0.0071 Score=57.88 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+...+.+..++..+ .-..++.++|++|+||||+|+.+++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 357899999999999998532 23467788999999999999999884
No 143
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.1 Score=50.06 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=40.2
Q ss_pred eEeccCCHHHHhhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 258 IVITTRNLCVVEKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 258 ilvTTR~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
|++|+....+...+.+ -..+.+.+++.+++.+.+.... ... ..+.+..++..++|.|+.+..+
T Consensus 140 iL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 140 LLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred EEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 5555554455443322 2478999999999998887653 111 1234567889999999765444
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.02 E-value=0.0059 Score=66.19 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=37.4
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.++++++..|... ...-+.++|++|+|||+||..+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999643 2345669999999999999998874
No 145
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.04 Score=57.68 Aligned_cols=156 Identities=14% Similarity=0.099 Sum_probs=84.6
Q ss_pred CceeeecchH---HHHHHHHhcCCC---CCCCCceEEEEEccCCccHHHHHHHHHhccc---------------------
Q 042891 160 AKVYGRDKEK---EETVELLLSDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR--------------------- 212 (423)
Q Consensus 160 ~~~vGr~~~~---~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~--------------------- 212 (423)
.++.|-++.+ .++++.|..++. -+..-++=+-++|++|.|||-||+.++....
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~as 390 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGAS 390 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchH
Confidence 4677776554 555556654321 1334467789999999999999999988542
Q ss_pred -cccCc-------cceeeEEeCC--------------cCcHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHHhh
Q 042891 213 -VHNHF-------DLKSWTCVSE--------------DFDIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVVEK 270 (423)
Q Consensus 213 -~~~~F-------~~~~wv~vs~--------------~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~~~ 270 (423)
+++.| ++.++++--+ +.....-+.+++-.+.+-. .....-++-+|....+.+.
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~-----~~~~vi~~a~tnr~d~ld~ 465 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE-----TSKGVIVLAATNRPDILDP 465 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc-----CCCcEEEEeccCCccccCH
Confidence 22222 2233332100 0011122223332222211 1122225667766665433
Q ss_pred c--CC---CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhh
Q 042891 271 T--GT---LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLV 324 (423)
Q Consensus 271 ~--~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPla 324 (423)
. .+ +..+.++.-+.....++|.-|+-..... .+...+++ |+...-|.+=|
T Consensus 466 allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 466 ALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred HhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 2 11 2467777778888899999887443322 23445555 77777776644
No 146
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.01 E-value=0.014 Score=53.14 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=39.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccC----ccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH----FDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
.-.++.|+|.+|+|||+||.+++-....... -..++|++....++..++ .++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 4469999999999999999998743222221 367899998887776544 33444433
No 147
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.00 E-value=0.01 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+...+|+|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 148
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.00 E-value=0.0046 Score=54.85 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|+|.|++|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 149
>PHA00729 NTP-binding motif containing protein
Probab=95.97 E-value=0.01 Score=53.33 Aligned_cols=25 Identities=44% Similarity=0.504 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999999999884
No 150
>PRK12377 putative replication protein; Provisional
Probab=95.95 E-value=0.0081 Score=55.15 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=29.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE 227 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 227 (423)
...+.++|.+|+|||+||..+.+.. ......++++++.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~~ 139 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVPD 139 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHHH
Confidence 3578999999999999999999953 33344457776543
No 151
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.94 E-value=0.076 Score=48.21 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=37.9
Q ss_pred CceeeecchH---HHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 160 AKVYGRDKEK---EETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 160 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.+++|.+..+ .-|++.|..++.=++-.++-|..+|++|.|||.+|+.+.|..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 4678877554 346677765442234457789999999999999999999854
No 152
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.93 E-value=0.011 Score=55.40 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+...+|+|.|..|+||||||+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 153
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.92 E-value=0.0084 Score=59.78 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=36.8
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++||++.++.+...++.+. -|-|.|++|+|||+||+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 58899999999999887654 5889999999999999999873
No 154
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.91 E-value=0.0051 Score=55.57 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|+|.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 155
>PRK04040 adenylate kinase; Provisional
Probab=95.85 E-value=0.0073 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 156
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.83 E-value=0.0061 Score=53.41 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 157
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.83 E-value=0.1 Score=53.35 Aligned_cols=53 Identities=28% Similarity=0.286 Sum_probs=35.2
Q ss_pred CCceeeecchHHHHHHHHh---cCCC---CCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 159 EAKVYGRDKEKEETVELLL---SDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
-.+++|.+..++++.+++. .+.. .+....+-+.++|++|+|||+||+.+.+..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 3468888877766655442 2110 012234468899999999999999998843
No 158
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.82 E-value=0.02 Score=50.70 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=35.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC-cCcHHHHHHHHHHHhhcC
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE-DFDIIWVTKSILKSIASD 245 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~il~~l~~~ 245 (423)
++||.++|+.|+||||.+-+++.....+ -..+..++... .....+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 3699999999999999877776633222 33455555432 123445566666666544
No 159
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.80 E-value=0.0063 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 160
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.79 E-value=0.0083 Score=51.75 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999884
No 161
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.77 E-value=0.0079 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998774
No 162
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.76 E-value=0.01 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+++|+|..|+|||||+..+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999873
No 163
>PRK05439 pantothenate kinase; Provisional
Probab=95.75 E-value=0.016 Score=54.78 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCCceEEEEEccCCccHHHHHHHHHh
Q 042891 184 DDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 184 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.....+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998876
No 164
>PRK00625 shikimate kinase; Provisional
Probab=95.75 E-value=0.0076 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.++||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.078 Score=52.77 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=39.7
Q ss_pred eEeccCCHHHHhhcCCC----CcccCCCCCh-hhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHc
Q 042891 258 IVITTRNLCVVEKTGTL----PAYPLKELSN-NDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKC 318 (423)
Q Consensus 258 ilvTTR~~~v~~~~~~~----~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c 318 (423)
|+-||....+...|+-. ..|.++.++. ++..+.++..- ...+.+.+.++.+.+.+|
T Consensus 644 i~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 644 IFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred EEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 77788888998887643 4788888887 77777777653 122345567777777777
No 166
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.69 E-value=0.011 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3459999999999999999999874
No 167
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.68 E-value=0.0078 Score=52.50 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 168
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.66 E-value=0.0088 Score=52.08 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|+|+.|+|||||++.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999988
No 169
>PRK06217 hypothetical protein; Validated
Probab=95.63 E-value=0.0087 Score=52.38 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=25.6
Q ss_pred EEEEEccCCccHHHHHHHHHhccccccCc--cceeeEE
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVHNHF--DLKSWTC 224 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F--~~~~wv~ 224 (423)
.|.|.|++|+||||||+.+.....+ .+| |..+|..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 5899999999999999999875322 233 4455543
No 170
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.14 Score=46.11 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=33.9
Q ss_pred ceee-ecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 161 KVYG-RDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 161 ~~vG-r~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
+++| .+..+++|.+.+.-+-. -+-.+++-+.++|++|.|||-||+.|+++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 3454 45666666655432110 023356778999999999999999999854
No 171
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.60 E-value=0.0078 Score=47.66 Aligned_cols=21 Identities=52% Similarity=0.627 Sum_probs=18.1
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|-|+|++|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997753
No 172
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.59 E-value=0.0088 Score=49.97 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|.|.|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 173
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.59 E-value=0.026 Score=52.38 Aligned_cols=43 Identities=23% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcC
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDF 229 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 229 (423)
+.-+++.|+|.+|+|||+++.++... .......++||+...++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCH
Confidence 35579999999999999999998873 45568899999988753
No 174
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.59 E-value=0.038 Score=54.18 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=36.3
Q ss_pred CceeeecchHHHHHHHHhcC--------CCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSD--------DLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.++.++.+.-.+... +.......+-|.++|++|+|||+||+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45788888888776665531 1001123467899999999999999999884
No 175
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.57 E-value=0.011 Score=49.28 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=27.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE 227 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 227 (423)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999853 234455555555444
No 176
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.55 E-value=0.01 Score=49.25 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.0
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.++|++|+|||+||+.++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999873
No 177
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.32 Score=44.24 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=81.9
Q ss_pred CceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhcc----------c----------
Q 042891 160 AKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYNDV----------R---------- 212 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----------~---------- 212 (423)
+++=|-+..++++++.+.-+-. -+-..++-+..+|++|.|||-+|+...... +
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGA 250 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGA 250 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchH
Confidence 3566789999999988754311 022345678899999999999999876522 1
Q ss_pred --cccCc-------cceeeEEe----------CCcCcHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHHh----
Q 042891 213 --VHNHF-------DLKSWTCV----------SEDFDIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVVE---- 269 (423)
Q Consensus 213 --~~~~F-------~~~~wv~v----------s~~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~~---- 269 (423)
+++.| .+++|+.- |......++++.+++-+..-+ +...-+.++||..|..-.+..
T Consensus 251 kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD--GFss~~~vKviAATNRvDiLDPALl 328 (424)
T KOG0652|consen 251 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD--GFSSDDRVKVIAATNRVDILDPALL 328 (424)
T ss_pred HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc--CCCCccceEEEeecccccccCHHHh
Confidence 22233 45677752 222234456666665553221 333445566776665433322
Q ss_pred -hcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHH
Q 042891 270 -KTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEK 313 (423)
Q Consensus 270 -~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~ 313 (423)
+-.-+..++.+.-+++.--.++.-++ ..-+...+-+++++++.
T Consensus 329 RSGRLDRKIEfP~Pne~aRarIlQIHs-RKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 329 RSGRLDRKIEFPHPNEEARARILQIHS-RKMNVSDDVNFEELARS 372 (424)
T ss_pred hcccccccccCCCCChHHHHHHHHHhh-hhcCCCCCCCHHHHhhc
Confidence 11122445554444444444454443 33333444566665543
No 178
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.50 E-value=0.017 Score=50.59 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=28.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV 225 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 225 (423)
.++|.|+|+.|+|||||++.+.. .....|...++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 36899999999999999999998 44566755554443
No 179
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.1 Score=49.79 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=40.1
Q ss_pred eEeccCCHHHHhhcCCC-CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 258 IVITTRNLCVVEKTGTL-PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 258 ilvTTR~~~v~~~~~~~-~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
|++|+....+...+.+. ..+.+.+++.+++.+.+.... . . ...+..++..++|.|+.+..+
T Consensus 147 iL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~--~-----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 147 WLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V--S-----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred EEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--C-----hHHHHHHHHHcCCCHHHHHHH
Confidence 56666555555443332 468899999999988886531 1 1 233667899999999866543
No 180
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.50 E-value=0.026 Score=50.87 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=31.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD 230 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 230 (423)
.-.++.|.|.+|+||||||.++.... ...-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 45799999999999999999987642 22334567887665554
No 181
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.49 E-value=0.011 Score=63.24 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=39.7
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+...+|.+..++.|+++|............++.++|++|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999988632210122345899999999999999999987
No 182
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.49 E-value=0.011 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999874
No 183
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.49 E-value=0.095 Score=56.25 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=35.5
Q ss_pred CceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..++.|.+.+.-+-. .+-...+-|.++|++|+|||+||+.+.+.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4577888887777776542100 01123456889999999999999999984
No 184
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.48 E-value=0.015 Score=47.22 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=17.9
Q ss_pred EEEEccCCccHHHHHHHHHhccccccCcc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDVRVHNHFD 218 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~ 218 (423)
|-|+|.+|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57899999999999999988 3445553
No 185
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.48 E-value=0.024 Score=51.35 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=34.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWV 234 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 234 (423)
.-.++.|+|.+|+|||+||.++.... ...-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 34699999999999999999988743 2334678899877 5655443
No 186
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.47 E-value=0.01 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|.++|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4788999999999999999874
No 187
>PRK13947 shikimate kinase; Provisional
Probab=95.45 E-value=0.011 Score=50.88 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+||+|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999883
No 188
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.45 E-value=0.012 Score=51.79 Aligned_cols=25 Identities=48% Similarity=0.546 Sum_probs=22.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4699999999999999999999853
No 189
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.44 E-value=0.025 Score=51.17 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=37.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCc------cceeeEEeCCcCcHHHHHHHHHHH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF------DLKSWTCVSEDFDIIWVTKSILKS 241 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~~~~il~~ 241 (423)
.-.++.|+|.+|+|||+||.++.-.. ...- ..++|++....++...+. .+...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~ 76 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVR 76 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHH
Confidence 45699999999999999999987632 2222 457899888777765443 33333
No 190
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.011 Score=51.33 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|.|++|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 191
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.43 E-value=0.039 Score=54.13 Aligned_cols=52 Identities=27% Similarity=0.372 Sum_probs=37.7
Q ss_pred CCceeeecchHHHHHHHHhcC--------CCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSD--------DLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+..++|.+..++.+..++... ..........|.++|++|+|||+||+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345889888888888777431 1101112467899999999999999999874
No 192
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.43 E-value=0.013 Score=46.94 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEccCCccHHHHHHHHHhcc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~ 211 (423)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 193
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.42 E-value=0.015 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|.|+|++|+||||||+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 194
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.014 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999884
No 195
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.41 E-value=0.019 Score=48.62 Aligned_cols=34 Identities=29% Similarity=0.220 Sum_probs=25.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.||-|.|.+|+||||||+.+.+. ....-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR--LFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEe
Confidence 58999999999999999999984 33333334444
No 196
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.41 E-value=0.013 Score=53.30 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.+..+|.++||+|+||||+.+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 356688999999999999999998753
No 197
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.40 E-value=0.027 Score=51.32 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=28.1
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...++++.+... ..+..+|+|.|+||.|||||.-.+...
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 455666666543 235689999999999999999887663
No 198
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.40 E-value=0.014 Score=49.33 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=29.6
Q ss_pred EEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD 230 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 230 (423)
++.|+|.+|+||||++..+.... ...-..++|++....+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 46899999999999999998743 23345677777765543
No 199
>PRK13949 shikimate kinase; Provisional
Probab=95.36 E-value=0.013 Score=50.68 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|++|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 200
>PRK14530 adenylate kinase; Provisional
Probab=95.34 E-value=0.013 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 201
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.33 E-value=0.17 Score=48.66 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=31.3
Q ss_pred eee-ecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 162 VYG-RDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 162 ~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++| -+..++.+.+.+..+ .-....-++|+.|+||||+|..+.+
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~ 50 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAK 50 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHH
Confidence 455 555667777777432 2345779999999999999988865
No 202
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.32 E-value=0.019 Score=53.09 Aligned_cols=64 Identities=23% Similarity=0.191 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHH
Q 042891 170 EETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 170 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
.+|+..+.. ..++..+|+|.|.||+|||||.-.+-....-+++=-.++=|+-|.+|+-..++-+
T Consensus 38 ~~ll~~l~p----~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYP----RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhh----cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 455555543 2457789999999999999999887764433344344555666677665555443
No 203
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.29 E-value=0.013 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 204
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.27 E-value=0.02 Score=54.63 Aligned_cols=51 Identities=25% Similarity=0.412 Sum_probs=42.6
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...|+|.++.+++|++.+.......+..-+|+-++|+.|.||||||..+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999998764332345678999999999999999999877
No 205
>PRK10536 hypothetical protein; Provisional
Probab=95.24 E-value=0.035 Score=50.86 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=39.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcccee
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKS 221 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~ 221 (423)
...+.++......++.+|.. ..++.+.|+.|.|||+||..+..+.-..+.|+..+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 34567788888889998853 24999999999999999999877422234454433
No 206
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.24 E-value=0.014 Score=49.55 Aligned_cols=20 Identities=45% Similarity=0.770 Sum_probs=18.6
Q ss_pred EEEEEccCCccHHHHHHHHH
Q 042891 189 VIPIIGMGGIGKTTLAQLVY 208 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~ 208 (423)
.|+|.|.+|+||||++..+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 207
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.24 E-value=0.015 Score=49.13 Aligned_cols=21 Identities=48% Similarity=0.713 Sum_probs=19.2
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|+|++|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999873
No 208
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=95.23 E-value=0.33 Score=46.37 Aligned_cols=156 Identities=14% Similarity=0.112 Sum_probs=89.4
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc-------------ccCccceeeEEe-
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV-------------HNHFDLKSWTCV- 225 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~v- 225 (423)
.+++|.+..++.+.+.+..+. -....-++|+.|+||+++|..+.+..-- ...++...|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 368899999999999885432 2468999999999999998777553210 112233345431
Q ss_pred ----CCcC----------------c-HHHHHHHHHHHhhcCCCCC---------cCCC----------------CceeeE
Q 042891 226 ----SEDF----------------D-IIWVTKSILKSIASDQLVD---------DRDL----------------NLLQIV 259 (423)
Q Consensus 226 ----s~~~----------------~-~~~~~~~il~~l~~~~~~~---------~~~~----------------~~l~il 259 (423)
+... . ..+-.++|.+.+....... .+.+ +.+-|+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fIL 158 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLIL 158 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEE
Confidence 1100 0 0112344544443322100 0111 111166
Q ss_pred eccCCHHHHhhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHh
Q 042891 260 ITTRNLCVVEKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKS 327 (423)
Q Consensus 260 vTTR~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~ 327 (423)
+|+....+...+.+ ...+++.+++.++..+.+........ .......++..++|.|..+..
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 66655555444333 25799999999999999987642111 011136889999999976544
No 209
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.023 Score=49.05 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+.|.|++|+|||||++.++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 58899999999999999999985
No 210
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.026 Score=54.83 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|+++|++|+||||++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998763
No 211
>PLN02348 phosphoribulokinase
Probab=95.20 E-value=0.025 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+...+|+|.|.+|+||||||+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 212
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.20 E-value=0.016 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999774
No 213
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.19 E-value=0.019 Score=51.31 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5678999999999999999999763
No 214
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.18 E-value=0.041 Score=52.54 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=41.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccC----ccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH----FDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
.-.++-|+|.+|+|||+|+.+++-+...... =..++||+....|+..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 4578999999999999999998764332111 1378999999888877654 4455443
No 215
>CHL00176 ftsH cell division protein; Validated
Probab=95.17 E-value=0.13 Score=53.89 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=34.7
Q ss_pred CCceeeecchHHHHHHH---HhcCCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVEL---LLSDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.++.|.+..++++.+. |..+.. -+....+-|.++|++|+|||+||+.+++.
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34678887666665554 332210 01223456899999999999999999884
No 216
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.15 E-value=0.032 Score=45.89 Aligned_cols=24 Identities=38% Similarity=0.373 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+|.+.|.-|.|||||++.+.+.
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 217
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.15 E-value=0.013 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999874
No 218
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.13 E-value=0.037 Score=47.07 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=30.6
Q ss_pred chHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 167 KEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 167 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
..+++|.++|. + +++.++|..|+|||||...+..+.
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45888899883 2 699999999999999999998853
No 219
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.13 E-value=0.023 Score=51.63 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=28.8
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTC 224 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 224 (423)
-.++|+|..|+|||||...+..+ ....|..+++++
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 47899999999999999998874 567787776665
No 220
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.07 E-value=0.02 Score=51.13 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=24.0
Q ss_pred CCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 184 DDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 184 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++++|+++|..|+|||||..++.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999998874
No 221
>PRK13975 thymidylate kinase; Provisional
Probab=95.06 E-value=0.019 Score=50.67 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhcc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999843
No 222
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.06 E-value=0.042 Score=48.34 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 223
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.019 Score=51.60 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|..|+|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 224
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.18 Score=49.57 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=56.6
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHH
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
.+..++||+.+++.+.+|+...- ..+....+-|.|-+|.|||.+...++.+..-...=.+++++....--....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999997643 2345567889999999999999999986432111123455543332345566666
Q ss_pred HHHHh
Q 042891 238 ILKSI 242 (423)
Q Consensus 238 il~~l 242 (423)
|...+
T Consensus 226 I~~~~ 230 (529)
T KOG2227|consen 226 IFSSL 230 (529)
T ss_pred HHHHH
Confidence 66655
No 225
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.01 E-value=0.044 Score=52.48 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=41.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCc----cceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF----DLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
.-.++-|+|++|+|||+|+.+++-.......+ ..++||+...+|+..++. ++++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 45689999999999999999987643222111 478999999988887664 3445543
No 226
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.99 E-value=0.022 Score=44.85 Aligned_cols=21 Identities=43% Similarity=0.474 Sum_probs=19.4
Q ss_pred eEEEEEccCCccHHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVY 208 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~ 208 (423)
..++|+|+.|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 589999999999999999976
No 227
>PRK14527 adenylate kinase; Provisional
Probab=94.97 E-value=0.022 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 228
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.062 Score=50.00 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhccc----------------------c-------ccCccceeeEE---------eC
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDVR----------------------V-------HNHFDLKSWTC---------VS 226 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~----------------------~-------~~~F~~~~wv~---------vs 226 (423)
..+..++|||++|-|||-||+.|+...- + +++-.|++++. .+
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~s 243 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFS 243 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEec
Confidence 3467899999999999999999987320 1 23335666664 12
Q ss_pred CcC-cHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHH
Q 042891 227 EDF-DIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVV 268 (423)
Q Consensus 227 ~~~-~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~ 268 (423)
+.. +-..++..+++-+. +.++.+.+..+.+|+||-.....
T Consensus 244 e~Ts~dreiqrTLMeLln--qmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 244 EGTSSDREIQRTLMELLN--QMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred cccchhHHHHHHHHHHHH--hhccchhcccccEEEecCCcccc
Confidence 211 22334444443332 22255667777799998776543
No 229
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.94 E-value=0.019 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.592 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
||.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998773
No 230
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.94 E-value=0.022 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|.|+|+.|.|||||++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999874
No 231
>PRK13948 shikimate kinase; Provisional
Probab=94.92 E-value=0.026 Score=49.25 Aligned_cols=25 Identities=16% Similarity=0.321 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.++||.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 232
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.91 E-value=0.025 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999873
No 233
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.91 E-value=0.036 Score=49.54 Aligned_cols=21 Identities=52% Similarity=0.855 Sum_probs=18.5
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999988554
No 234
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.91 E-value=0.032 Score=49.76 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=44.1
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc-cceeeEEeCCcCc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-DLKSWTCVSEDFD 230 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~ 230 (423)
-.++||-++.++.+.-... +++.+-+.|.||+|+||||-+..+.+.. ....+ +.+.=...|+.-.
T Consensus 26 l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccc
Confidence 3578999988888877663 3467789999999999999777666632 11122 4445555565543
No 235
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.91 E-value=0.025 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999884
No 236
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.90 E-value=0.021 Score=49.22 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=18.6
Q ss_pred EEEEccCCccHHHHHHHHHhcc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~ 211 (423)
|.|.|.+|+|||||.+.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998743
No 237
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.90 E-value=0.057 Score=49.98 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=40.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCc----cceeeEEeCCcCcHHHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF----DLKSWTCVSEDFDIIWVTKSILKSI 242 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~il~~l 242 (423)
-.+.=|+|.+|+|||.|+.+++-+..+.... ..++|++....|+..++. +|++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 4599999999999999998887544333222 358999999999887765 466543
No 238
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.15 Score=51.67 Aligned_cols=129 Identities=18% Similarity=0.193 Sum_probs=68.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccc----------------------cccCc-------cceeeEEe-----CC-----
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVR----------------------VHNHF-------DLKSWTCV-----SE----- 227 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~----------------------~~~~F-------~~~~wv~v-----s~----- 227 (423)
..-|.+||++|+|||-||+.|.|... ++..| .|+||..- +.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 45688999999999999999999431 12222 34555431 00
Q ss_pred cCcHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHHhh-c-CC---CCcccCCCCChhhHHHHHHHhhcCCCCC-
Q 042891 228 DFDIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVVEK-T-GT---LPAYPLKELSNNDCLSVFTQHSLGEKDF- 301 (423)
Q Consensus 228 ~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~~~-~-~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~- 301 (423)
.-...++..+++..+.+- ..-..+-||-.|-.+.+.+. + .+ +...-++.-+.+|-..+++...-....+
T Consensus 625 s~~s~RvvNqLLtElDGl-----~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl 699 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGL-----EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPL 699 (802)
T ss_pred chhHHHHHHHHHHHhccc-----ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCC
Confidence 111223444444443221 11111225555544444322 1 12 2456677778889999998886432221
Q ss_pred CCCccHHHHHHHHHHHcCCch
Q 042891 302 STHPSLKEIGEKIVKKCNGLP 322 (423)
Q Consensus 302 ~~~~~l~~~~~~I~~~c~GlP 322 (423)
..+-++.++++. .+|.|.-
T Consensus 700 ~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 700 SSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CcccCHHHHhhc--ccccCCc
Confidence 223456666543 3566654
No 239
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.16 Score=51.99 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=34.2
Q ss_pred ceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++=|.++-+.+|.+...-+-. -+-...+-|-.+|++|+|||++|+.+.+.
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 444566666666554432210 02245678999999999999999999994
No 240
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.90 E-value=0.033 Score=52.05 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.++|.++|++|+||||++..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999998888763
No 241
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.88 E-value=0.51 Score=45.15 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=38.9
Q ss_pred eEeccCCHHHHhhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 258 IVITTRNLCVVEKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 258 ilvTTR~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
|++|+....+...+.+ -..+.+.+++.++..+.+..... . . ...+...+..++|.|+.+
T Consensus 141 iL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--~---~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 141 LLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--A---E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc--c---C----hHHHHHHHHHcCCCHHHH
Confidence 6666655555544333 24789999999999988876531 1 1 123566788999999643
No 242
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.86 E-value=0.036 Score=49.02 Aligned_cols=34 Identities=26% Similarity=0.189 Sum_probs=26.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTC 224 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 224 (423)
.|++|+|++|+|||||.+.+..= ...=+..+|+.
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L---E~~~~G~I~i~ 62 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL---EEPDSGSITVD 62 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC---cCCCCceEEEC
Confidence 59999999999999999998763 33335667775
No 243
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.85 E-value=0.021 Score=55.32 Aligned_cols=24 Identities=46% Similarity=0.667 Sum_probs=20.0
Q ss_pred CceEEEEEccCCccHHH-HHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTT-LAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTt-LA~~v~~ 209 (423)
+-++|++||+.|+|||| ||+..+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999997 7776655
No 244
>PLN02200 adenylate kinase family protein
Probab=94.85 E-value=0.027 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 245
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.83 E-value=0.021 Score=48.48 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
||+|+|+.|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 246
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.15 Score=52.04 Aligned_cols=105 Identities=14% Similarity=0.062 Sum_probs=61.0
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhccccccCc-------------------------------cceeeEEeCC------
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-------------------------------DLKSWTCVSE------ 227 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-------------------------------~~~~wv~vs~------ 227 (423)
...+.+-++|++|.|||.||+.+.+.. ..+| .+++|+.--+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~--~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r 351 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES--RSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGR 351 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC--CCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccC
Confidence 345689999999999999999999932 2222 2344443100
Q ss_pred cC----cHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHHhhc-----CCCCcccCCCCChhhHHHHHHHhhc
Q 042891 228 DF----DIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVVEKT-----GTLPAYPLKELSNNDCLSVFTQHSL 296 (423)
Q Consensus 228 ~~----~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~a~ 296 (423)
.. ...++..+++..+.+-. ..+.+.||-||-........ .-...+.++.-+.++..+.|+.+.-
T Consensus 352 ~~~~~~~~~r~~~~lL~~~d~~e-----~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 352 GPSEDGSGRRVVGQLLTELDGIE-----KAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CCCCchHHHHHHHHHHHHhcCCC-----ccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 00 11244555555443221 12223355555544433321 1134678888899999999998864
No 247
>PRK04182 cytidylate kinase; Provisional
Probab=94.79 E-value=0.025 Score=49.08 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.5
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 248
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.78 E-value=0.053 Score=50.99 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+++|++|+||||++..+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888764
No 249
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.78 E-value=0.045 Score=50.76 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=35.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCc-cceeeEEeCCcCc-HHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-DLKSWTCVSEDFD-IIWVTKSIL 239 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~-~~~~~~~il 239 (423)
..++|+|..|+|||||++.++++ ++.+| +..+++-+++... +.++.+++.
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~ 121 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMK 121 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHH
Confidence 47899999999999999999995 44445 4455666776553 344444443
No 250
>PRK15453 phosphoribulokinase; Provisional
Probab=94.76 E-value=0.029 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998865
No 251
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.19 Score=51.00 Aligned_cols=53 Identities=25% Similarity=0.241 Sum_probs=39.5
Q ss_pred CCceeeecchHHHHHHHHhcCCC------CCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDL------RTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
-.++=|.+....++.+++..-.. -+-...+-|.++|++|+|||.||+.+.+..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 34677889888888887764211 012345678999999999999999999854
No 252
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.74 E-value=0.039 Score=56.31 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+++.+|+|.|+.|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 36789999999999999999999873
No 253
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.74 E-value=0.027 Score=47.66 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.3
Q ss_pred EEEEEccCCccHHHHHHHHHhcc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.|+++|.+|+|||||+..+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 254
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.74 E-value=0.026 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|+|+.|.|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999884
No 255
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=0.58 Score=44.64 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=40.9
Q ss_pred eEeccCCHHHHhhcCCC-CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 258 IVITTRNLCVVEKTGTL-PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 258 ilvTTR~~~v~~~~~~~-~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
|++|++...+...+.+. ..+.+.+++.++..+.+.... . . ....++..++|.|+.+..+
T Consensus 142 iL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 142 LLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 67777666665554333 478999999999998886531 1 0 1356789999999876544
No 256
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.72 E-value=0.023 Score=51.07 Aligned_cols=24 Identities=42% Similarity=0.605 Sum_probs=21.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhcc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.-|.|+|++|+|||||+..+.++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 578999999999999999998864
No 257
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.69 E-value=0.024 Score=48.53 Aligned_cols=21 Identities=38% Similarity=0.389 Sum_probs=17.4
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999873
No 258
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.69 E-value=0.032 Score=48.69 Aligned_cols=38 Identities=21% Similarity=0.138 Sum_probs=27.6
Q ss_pred EEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED 228 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 228 (423)
++.|.|++|+|||+||.++....- ..=..++|++...+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCC
Confidence 367899999999999998876421 22245778877654
No 259
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.025 Score=52.78 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcccc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRV 213 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~ 213 (423)
-++|.++|++|.|||+|.+.+++...+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhee
Confidence 378999999999999999999986644
No 260
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.67 E-value=0.04 Score=57.33 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=40.8
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+++|-+..++++..||..... ......++.|+|++|+||||+++.+...
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345799999999999999865332 1223468999999999999999999874
No 261
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.67 E-value=0.096 Score=49.35 Aligned_cols=49 Identities=31% Similarity=0.405 Sum_probs=35.9
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|-.++..++-.|+...-. -+.-.-+.|+|+.|.|||+|...+..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhh
Confidence 3588988888888888754221 112346788999999999998877765
No 262
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.66 E-value=0.063 Score=43.44 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=31.7
Q ss_pred ceeeecchHHHHHHHHhcCC-CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLSDD-LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|-+-..+.+++.+..-- ......+-|++.+|.+|+|||.+++.+.+.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45555544444444443210 013456789999999999999987777664
No 263
>PRK06761 hypothetical protein; Provisional
Probab=94.65 E-value=0.048 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.8
Q ss_pred eEEEEEccCCccHHHHHHHHHhcc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.+|.|.|++|+||||+++.+++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999853
No 264
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.63 E-value=0.029 Score=48.23 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.3
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999873
No 265
>PRK13946 shikimate kinase; Provisional
Probab=94.62 E-value=0.031 Score=48.94 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+.|.++|++|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999884
No 266
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.62 E-value=0.053 Score=50.68 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 184 DDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 184 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+..+|.|+|.+|+|||||...+.+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999999884
No 267
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.61 E-value=0.066 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|.++|+.|+||||++..+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999988875
No 268
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.59 E-value=0.046 Score=48.53 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=35.5
Q ss_pred eecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEE
Q 042891 164 GRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTC 224 (423)
Q Consensus 164 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 224 (423)
.+..+....++.|.. ..++.+.|++|.|||.||....-+.-..+.|+..+++.
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 455666777787762 35999999999999999988776543457777777664
No 269
>PLN02796 D-glycerate 3-kinase
Probab=94.57 E-value=0.033 Score=53.23 Aligned_cols=25 Identities=36% Similarity=0.202 Sum_probs=22.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-+|+|.|..|+|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5679999999999999999999873
No 270
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.55 E-value=0.085 Score=53.26 Aligned_cols=152 Identities=15% Similarity=0.158 Sum_probs=82.2
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc--cCcc--ceeeEE----eCCcCcH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH--NHFD--LKSWTC----VSEDFDI 231 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F~--~~~wv~----vs~~~~~ 231 (423)
.+++|-+.....|.+.+..+. -..--...|+-|+||||+|+-+..-.-.. ...+ ..+-.| -+...|+
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 467999999999999986532 23456678999999999998876521111 1110 001111 0100111
Q ss_pred ----------HHHHHHHHHHhhcCCCCC------cCCCC------------cee--------eEeccCCHHHHhhcCCC-
Q 042891 232 ----------IWVTKSILKSIASDQLVD------DRDLN------------LLQ--------IVITTRNLCVVEKTGTL- 274 (423)
Q Consensus 232 ----------~~~~~~il~~l~~~~~~~------~~~~~------------~l~--------ilvTTR~~~v~~~~~~~- 274 (423)
.+-.++|.+.+.-..... .+... .|+ |+.||--..+....-+.
T Consensus 91 iEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRc 170 (515)
T COG2812 91 IEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRC 170 (515)
T ss_pred hhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcc
Confidence 112233444332211100 00101 111 88888877776654433
Q ss_pred CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC
Q 042891 275 PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNG 320 (423)
Q Consensus 275 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~G 320 (423)
..|.++.|+.++-...+...+-...-... .+...-|++...|
T Consensus 171 q~f~fkri~~~~I~~~L~~i~~~E~I~~e----~~aL~~ia~~a~G 212 (515)
T COG2812 171 QRFDFKRLDLEEIAKHLAAILDKEGINIE----EDALSLIARAAEG 212 (515)
T ss_pred ccccccCCCHHHHHHHHHHHHHhcCCccC----HHHHHHHHHHcCC
Confidence 57999999999888877776643322221 2444555555555
No 271
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.54 E-value=0.028 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 48999999999999999999873
No 272
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.53 E-value=0.1 Score=48.54 Aligned_cols=21 Identities=43% Similarity=0.494 Sum_probs=18.9
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-|.+.|++|+|||+||+.+.+
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999986
No 273
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.035 Score=46.86 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999877765
No 274
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.52 E-value=0.031 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|++|+|||||-+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 275
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.51 E-value=0.029 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 276
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=0.75 Score=44.32 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=39.4
Q ss_pred eEeccCCHHHHhhcCC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 258 IVITTRNLCVVEKTGT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 258 ilvTTR~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
|++|++...+...+.+ -..+.+.+++.++..+.+.... + . + .+.+..++..++|.|..+
T Consensus 142 iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~-~--~-----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 142 FLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T-M--S-----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred EEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C-C--C-----HHHHHHHHHHcCCCHHHH
Confidence 6667666666644332 2468899999999988776542 1 1 1 233678899999999644
No 277
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.51 E-value=0.076 Score=46.77 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|+|.|..|+||||+++.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 278
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.47 E-value=0.038 Score=52.81 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+++|++|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999998774
No 279
>PRK13695 putative NTPase; Provisional
Probab=94.47 E-value=0.034 Score=48.13 Aligned_cols=22 Identities=41% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.46 E-value=0.11 Score=51.66 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+.+|.++|.+|+||||++..++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999988764
No 281
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.45 E-value=0.033 Score=44.52 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|+|+|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 282
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.45 E-value=0.039 Score=53.18 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=37.7
Q ss_pred ccCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 157 VNEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 157 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++-..++|-++.+..|+..+.++ .+.-|.|.|..|.||||+|+.+++
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45668999998888888777543 455677999999999999999865
No 283
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.44 E-value=0.032 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|+.|+||||+|+.+-+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999988865
No 284
>PRK14532 adenylate kinase; Provisional
Probab=94.44 E-value=0.03 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|+|++|+||||+|+.+...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 778999999999999999873
No 285
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.43 E-value=0.029 Score=52.54 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=19.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.|+|+|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 4689999999999998887765
No 286
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.42 E-value=0.045 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|.|+|+.|+||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998776
No 287
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.40 E-value=0.23 Score=49.15 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.9
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++.|.|+-++|||||++.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~ 59 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIK 59 (398)
T ss_pred EEEEECCccccHHHHHHHHHh
Confidence 999999999999999966655
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.39 E-value=0.06 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...++.++|++|+||||++.++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998763
No 289
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.39 E-value=0.03 Score=48.81 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 290
>PRK08356 hypothetical protein; Provisional
Probab=94.39 E-value=0.032 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.3
Q ss_pred eEEEEEccCCccHHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVY 208 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~ 208 (423)
.+|+|+|++|+||||+|+.+-
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999993
No 291
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.38 E-value=0.032 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|+|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999874
No 292
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.37 E-value=0.44 Score=39.92 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=74.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhcc-cCChHHHHHHHHHHHhhhhcc-cccc
Q 042891 2 AILFVSSELLLKKLASKAILLFARQKQSQADLMKWKKTLVKINEVLDDADEKQ-NTDQSVKMWLGDLQNLAYDRN-LMFQ 79 (423)
Q Consensus 2 ~~~s~~v~~l~~kl~s~~~~e~~~~~~v~~~l~~L~~~l~~i~~~l~~a~~~~-~~~~~v~~Wl~~lr~~ayd~e-~~~~ 79 (423)
.+.+|+++.+++.|...+..........+.-+++|..++++|..++.+-+... ..+..-+.=++++.+...+++ +. .
T Consensus 5 L~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV-~ 83 (147)
T PF05659_consen 5 LVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV-E 83 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH-H
Confidence 46678888888888888888888888889999999999999999999987754 223333556667777666666 22 1
Q ss_pred ccccccccccccccccccccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 042891 80 GPAAAQTTTTKFRKLIPSCCTNFSPRTMKFDHMMAAKIEDVTIRLQEIEK 129 (423)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~rl~~i~~ 129 (423)
. ....++ .++...++.+++|+++.+.+....+
T Consensus 84 k----~sk~~r--------------~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 84 K----CSKVRR--------------WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred H----hccccH--------------HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 1 000011 0123345677888888877776543
No 293
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.35 E-value=0.035 Score=46.11 Aligned_cols=24 Identities=46% Similarity=0.559 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHhcc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
+.|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 368899999999999999997743
No 294
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.35 E-value=0.065 Score=51.06 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=30.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTK 236 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 236 (423)
.+++.+.|.||+||||+|-...-. .......++-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999998874431 222334456565544444444433
No 295
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.34 E-value=0.04 Score=46.99 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++|+|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.34 E-value=0.053 Score=51.60 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=31.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDI 231 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 231 (423)
.-+++-|+|++|+||||||.++.... ...-..++|++..+.++.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHH
Confidence 45799999999999999999877643 233355677766655544
No 297
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.33 E-value=0.067 Score=46.93 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+.|+|+.|.|||||++.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 298
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.32 E-value=0.03 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998763
No 299
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=94.32 E-value=0.034 Score=47.56 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|+|+|.+|+|||||+..+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998774
No 300
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.31 E-value=0.036 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|+|+.|+||||+|+.+.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5888999999999999999873
No 301
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.31 E-value=0.039 Score=47.41 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+...|+|+|++|+|||||...+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3456999999999999999999874
No 302
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.28 E-value=0.054 Score=51.62 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=33.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDI 231 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 231 (423)
.-+++-|+|++|+||||||.+++-. ....-..++|++....++.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 4568999999999999999997763 2333456778887666554
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.27 E-value=0.027 Score=51.43 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.2
Q ss_pred EEccCCccHHHHHHHHHhcc
Q 042891 192 IIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 192 I~G~gGiGKTtLA~~v~~~~ 211 (423)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998843
No 304
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.27 E-value=0.071 Score=51.35 Aligned_cols=58 Identities=14% Similarity=0.081 Sum_probs=42.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcccccc----CccceeeEEeCCcCcHHHHHHHHHHHhhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHN----HFDLKSWTCVSEDFDIIWVTKSILKSIAS 244 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 244 (423)
.-.++-|+|.+|+|||+|+.+++-...... .-..++||+...+|++.++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 446888999999999999988864333221 124689999999999887654 5565543
No 305
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.27 E-value=0.037 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|.+|+|||||+..+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 306
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.26 E-value=0.037 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.++|.+|+|||||+..+.++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 307
>PLN02165 adenylate isopentenyltransferase
Probab=94.25 E-value=0.042 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-.+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3459999999999999999998874
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.25 E-value=0.063 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-+++.++|++|+||||++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999988887663
No 309
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.25 E-value=0.15 Score=48.88 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=48.5
Q ss_pred chHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc--cCc---cceeeEEeCCcCcHHHHHHHHHHH
Q 042891 167 KEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH--NHF---DLKSWTCVSEDFDIIWVTKSILKS 241 (423)
Q Consensus 167 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--~~F---~~~~wv~vs~~~~~~~~~~~il~~ 241 (423)
.-.+.|.+.|...+ .....+|+|.|.-|+||||+.+.+.+..+-. ..+ ..-.|-.-...--...++..|..+
T Consensus 3 ~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~ 79 (325)
T PF07693_consen 3 PYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQ 79 (325)
T ss_pred HHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHH
Confidence 34566777776542 2567899999999999999999998743322 112 223444444333345667777777
Q ss_pred hhcC
Q 042891 242 IASD 245 (423)
Q Consensus 242 l~~~ 245 (423)
+...
T Consensus 80 l~~~ 83 (325)
T PF07693_consen 80 LEKH 83 (325)
T ss_pred HHHh
Confidence 6654
No 310
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.24 E-value=0.1 Score=53.96 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=34.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSI 242 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 242 (423)
.-++..++|++|+||||||..|+++. .| .++=|..|+.-....+-..|...+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~av 376 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAV 376 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHH
Confidence 45789999999999999999998843 22 234455666555555544444443
No 311
>PRK14531 adenylate kinase; Provisional
Probab=94.23 E-value=0.04 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|+|++|+||||+++.+...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 312
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.37 Score=44.61 Aligned_cols=51 Identities=24% Similarity=0.158 Sum_probs=37.7
Q ss_pred ceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 161 KVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
++=|-+..+++|.+...-+=. -+-..+.-|-++|.+|.|||-||+.|.|..
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 566788888998887632210 123455678899999999999999999954
No 313
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.23 E-value=0.11 Score=49.94 Aligned_cols=42 Identities=29% Similarity=0.348 Sum_probs=34.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..++|.+.....+...++... -+-+.|.+|+|||+||+.+..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~ 65 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR 65 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH
Confidence 348888888888777776543 578899999999999999987
No 314
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.21 E-value=0.054 Score=55.18 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=41.7
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEE
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTC 224 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 224 (423)
++.--.+-++++..||...-. .....+++.+.|++|+||||.++.+++.. .|+.+-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 455556678888899865321 22345699999999999999999998842 355555643
No 315
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.21 E-value=0.038 Score=49.59 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=18.9
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998877665
No 316
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.18 E-value=0.039 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++|+|+|.+|+|||||+..+...
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~ 24 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR 24 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 317
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.18 E-value=0.11 Score=54.29 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=47.9
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc-CccceeeEEeCCcCcHHHHHHH
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN-HFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
..+++|.+..++.+...+... +-+.++|++|+||||||+.+.+. +.. .|...+++.-+. .+..+++..
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~~-~~~~~~~~~ 85 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNPE-DPNMPRIVE 85 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCCC-CCchHHHHH
Confidence 356889888888777777432 24559999999999999999873 332 333333332222 234455666
Q ss_pred HHHHhhc
Q 042891 238 ILKSIAS 244 (423)
Q Consensus 238 il~~l~~ 244 (423)
++..++.
T Consensus 86 v~~~~g~ 92 (608)
T TIGR00764 86 VPAGEGR 92 (608)
T ss_pred HHHhhch
Confidence 6665544
No 318
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.17 E-value=0.09 Score=48.95 Aligned_cols=49 Identities=18% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHH
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 235 (423)
+.-+++=|+|+.|+||||||.+++-. .+..-..++|++.-..+++..+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~ 106 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK 106 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH
Confidence 35679999999999999999988764 34444588999999989887653
No 319
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.16 E-value=0.04 Score=41.98 Aligned_cols=22 Identities=50% Similarity=0.706 Sum_probs=19.2
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999988773
No 320
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.15 E-value=0.038 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-++.|+|+|..|.|||||++.+.+.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999873
No 321
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.15 E-value=0.069 Score=50.91 Aligned_cols=58 Identities=14% Similarity=0.151 Sum_probs=41.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcccccc----CccceeeEEeCCcCcHHHHHHHHHHHhhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHN----HFDLKSWTCVSEDFDIIWVTKSILKSIAS 244 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~~ 244 (423)
.-+++-|+|++|+|||+|+.+++-...... .=..++||+....|++.++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 456899999999999999988764322221 124689999999898887654 5666543
No 322
>PRK01184 hypothetical protein; Provisional
Probab=94.14 E-value=0.039 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=17.9
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|++|+||||+|+ +..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 489999999999999987 444
No 323
>PF13245 AAA_19: Part of AAA domain
Probab=94.11 E-value=0.051 Score=40.02 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=16.5
Q ss_pred eEEEEEccCCccHHHHH-HHHHh
Q 042891 188 SVIPIIGMGGIGKTTLA-QLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA-~~v~~ 209 (423)
+++.|.|++|.|||+++ ..+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999554 44444
No 324
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.10 E-value=0.042 Score=46.33 Aligned_cols=22 Identities=27% Similarity=0.678 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|.+|+|||||...+.++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998874
No 325
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.10 E-value=0.047 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|+++|..|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998764
No 326
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.09 E-value=0.046 Score=55.41 Aligned_cols=51 Identities=25% Similarity=0.206 Sum_probs=37.3
Q ss_pred CceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..+++|.+.+..+-. -+-...+-|.++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 4577899999888887642100 01123456899999999999999999984
No 327
>PRK07429 phosphoribulokinase; Provisional
Probab=94.07 E-value=0.055 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++-+|+|.|..|+|||||++.+..-
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 46779999999999999999999863
No 328
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.06 E-value=0.037 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|+|.|..|+|||||++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 329
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.02 E-value=0.092 Score=54.82 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=53.5
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHH
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 238 (423)
-.+++|.+..++.|...+... +.+.++|.+|+||||+|+.+.+.. ...+|+..+|..-+. .+...+++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHH
Confidence 346889888888888777432 368899999999999999998742 233457778865533 3556666666
Q ss_pred HHHhhc
Q 042891 239 LKSIAS 244 (423)
Q Consensus 239 l~~l~~ 244 (423)
+..++.
T Consensus 100 ~~~~G~ 105 (637)
T PRK13765 100 PAGKGK 105 (637)
T ss_pred HHhcCH
Confidence 655443
No 330
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.02 E-value=0.044 Score=49.04 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.++.-
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999873
No 331
>PRK08116 hypothetical protein; Validated
Probab=94.02 E-value=0.037 Score=51.60 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=26.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV 225 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 225 (423)
..+.++|..|+|||.||..+++.. ...-..++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEH
Confidence 358899999999999999999953 222334556653
No 332
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.01 E-value=0.069 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.++|+.|+||||+++.+...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~ 156 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAAR 156 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 333
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.01 E-value=0.078 Score=47.77 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=29.0
Q ss_pred EEEEEccCCccHHHHHHHHHhccc-----cccCccceeeEEeCCcCcHHHHHHHHHH
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVR-----VHNHFDLKSWTCVSEDFDIIWVTKSILK 240 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~-----~~~~F~~~~wv~vs~~~~~~~~~~~il~ 240 (423)
+..|+|++|.||||++..+..... ....-...+-++...+..+..++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987666655320 1123344454554544555555555555
No 334
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.01 E-value=0.044 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+..-
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 335
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.99 E-value=0.045 Score=46.36 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|+|.+|+|||||+..+.+.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 336
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.98 E-value=0.041 Score=45.56 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+-|.|.|-+|+|||||+..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH
Confidence 45688999999999999999986
No 337
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.98 E-value=0.048 Score=46.70 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-|.++||.|+||||+.+.+.+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHH
Confidence 478899999999999999987
No 338
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=93.97 E-value=0.042 Score=46.28 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|++.|.+|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999988763
No 339
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.97 E-value=0.058 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.++.++|+.|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998874
No 340
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.96 E-value=0.073 Score=51.20 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=35.4
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-..++|-+..+..++-.+..+ ...-+.|.|..|.|||||++.+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456889888888877766543 344577999999999999999964
No 341
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.96 E-value=0.07 Score=54.84 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=35.6
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|.+..++.+...+... ...-|-|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999998877532 234567899999999999999975
No 342
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.95 E-value=0.047 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.++|++|+||||+|+.+...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57888999999999999999874
No 343
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.95 E-value=0.045 Score=50.17 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=26.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEE
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTC 224 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 224 (423)
-.+++|+|+.|+|||||.+.++. +...-...+++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g---~l~p~~G~V~l~ 62 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG---LLKPKSGEVLLD 62 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc---cCCCCCCEEEEC
Confidence 36999999999999999999987 233334455553
No 344
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.94 E-value=0.069 Score=47.89 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=25.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.+++|+|+.|.|||||++.+..- .......+++
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl---~~~~~G~i~~ 61 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA---LTPSRGQVRI 61 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCCceEEE
Confidence 48999999999999999999873 2234455554
No 345
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.93 E-value=0.045 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999998887765
No 346
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.93 E-value=0.053 Score=49.11 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=37.8
Q ss_pred cccCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 156 LVNEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 156 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+.-..++|.+..++.|++-...=- ......-+-++|..|.|||+|++.+.+.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHH
Confidence 3455689999999888876332100 1223456778999999999999999873
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.93 E-value=0.05 Score=47.01 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999988763
No 348
>PHA02244 ATPase-like protein
Probab=93.91 E-value=0.1 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|++|+|||+||+.+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999874
No 349
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.91 E-value=0.11 Score=49.87 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...|.+.+... .++..+|+|.|.+|+|||||+..+..
T Consensus 42 ~~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 42 AQELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred HHHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34555555321 24678999999999999999998766
No 350
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.051 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
. .+++|+|+.|.|||||++.+..-
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCC
Confidence 5 79999999999999999999873
No 351
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.91 E-value=0.046 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+..-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 352
>PRK13768 GTPase; Provisional
Probab=93.90 E-value=0.051 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.++.|.|+||+||||++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 5789999999999999888765
No 353
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.90 E-value=0.045 Score=49.02 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=18.6
Q ss_pred EEEEccCCccHHHHHHHHHh
Q 042891 190 IPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~ 209 (423)
|.|+|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999976
No 354
>PRK13236 nitrogenase reductase; Reviewed
Probab=93.90 E-value=0.056 Score=51.22 Aligned_cols=26 Identities=38% Similarity=0.627 Sum_probs=21.9
Q ss_pred CCCceEEEEEccCCccHHHHHHHHHh
Q 042891 184 DDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 184 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.+.+||++.|-||+||||+|..+..
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 35679999999999999998777654
No 355
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.90 E-value=0.047 Score=47.98 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.+...
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 356
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.89 E-value=0.047 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|+++|.+|+|||||...+.+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
No 357
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.89 E-value=0.18 Score=48.26 Aligned_cols=57 Identities=16% Similarity=0.056 Sum_probs=39.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcccccc----CccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHN----HFDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
.-.++.|+|.+|+|||+|+..++....... .-..++|++....|+..++ ..+.+.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 457999999999999999998875322211 1135699998887877763 44455443
No 358
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.88 E-value=0.061 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..-+|+|.|..|+|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999865
No 359
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.05 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 360
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.86 E-value=0.075 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=18.9
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|-+.|-||+||||+|-...-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5789999999999999876654
No 361
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.85 E-value=0.049 Score=45.27 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEccCCccHHHHHHHHHhcc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
-|+++|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=93.84 E-value=0.058 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+..+|.++|++|+||||++..++.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999998877776
No 363
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.84 E-value=0.062 Score=46.95 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|.|.+|+||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999873
No 364
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.83 E-value=0.042 Score=46.34 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=17.6
Q ss_pred EEccCCccHHHHHHHHHhc
Q 042891 192 IIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 192 I~G~gGiGKTtLA~~v~~~ 210 (423)
|+|++|+||||+|+.+...
T Consensus 1 i~G~PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKR 19 (151)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHh
Confidence 6899999999999999884
No 365
>PRK08181 transposase; Validated
Probab=93.83 E-value=0.038 Score=51.37 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=26.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV 225 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 225 (423)
.-+.++|++|+|||.||..+.+.. ......++++++
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH
Confidence 358999999999999999998842 233334455543
No 366
>PRK02496 adk adenylate kinase; Provisional
Probab=93.83 E-value=0.048 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.2
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.|.|+|++|+||||+|+.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 367
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.82 E-value=0.047 Score=50.82 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=19.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|.|-||+||||++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 4788889999999999888766
No 368
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.82 E-value=0.054 Score=48.07 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|+|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 369
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.81 E-value=0.052 Score=47.18 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5999999999999999999987
No 370
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.81 E-value=0.052 Score=48.76 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||...+..
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999988876
No 371
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.81 E-value=0.058 Score=51.88 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
..+..++|+|++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 457799999999999999999999854
No 372
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.81 E-value=0.065 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.|.|+|++|+|||||+..+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhc
Confidence 57999999999999999999874
No 373
>PRK09183 transposase/IS protein; Provisional
Probab=93.79 E-value=0.051 Score=50.40 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999774
No 374
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.79 E-value=0.094 Score=49.79 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.7
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....+|+|+|++|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999987763
No 375
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.78 E-value=0.049 Score=50.94 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=19.1
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|+|-||+||||+|..+..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~ 23 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTA 23 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 4788899999999998887765
No 376
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.076 Score=47.86 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=25.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.+++|+|..|.|||||.+.+... .......+++
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~---~~~~~G~i~~ 59 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL---LKPTSGRATV 59 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---CCCCceEEEE
Confidence 58999999999999999999873 2334455554
No 377
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.77 E-value=0.052 Score=46.28 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-|.|+|.+|+|||||+..+.++
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56889999999999999988653
No 378
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=93.77 E-value=0.053 Score=45.91 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.7
Q ss_pred EEEEccCCccHHHHHHHHHhcc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~ 211 (423)
|.++|.+|+|||||...+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988753
No 379
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.76 E-value=0.086 Score=50.81 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=41.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccC----ccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNH----FDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
.-.++-|+|.+|+|||+|+..++-....... -..++|++....|++.++ .+|++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 4568899999999999999888753322111 136899999999988776 45566554
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.76 E-value=0.21 Score=49.62 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+.+|.++|.+|+||||.|..++.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999877765
No 381
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.75 E-value=0.053 Score=45.92 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|.+|+|||||+..+.++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999888764
No 382
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.75 E-value=0.049 Score=46.32 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|++|+|+.|+|||||..++...
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 369999999999999999998763
No 383
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.73 E-value=0.042 Score=47.84 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=25.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV 225 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 225 (423)
.-+.++|..|+|||.||..+.+.. +... ..+.|+++
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~-~~~g-~~v~f~~~ 83 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEA-IRKG-YSVLFITA 83 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHh-ccCC-cceeEeec
Confidence 469999999999999999998843 2222 33455643
No 384
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.72 E-value=0.072 Score=45.88 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=31.3
Q ss_pred eeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 162 VYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 162 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++|....+.++++.+..-. ....-|-|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 4677777777777665422 12245669999999999999999984
No 385
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.053 Score=49.46 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 386
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.71 E-value=0.053 Score=45.61 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=19.0
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|+|++|+|||||...+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 387
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.71 E-value=0.055 Score=45.18 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEccCCccHHHHHHHHHhcc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~ 211 (423)
|.++|++|+|||||...+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998753
No 388
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=93.70 E-value=0.054 Score=46.04 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.7
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.++|.+|+|||||+..+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999888764
No 389
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.70 E-value=0.15 Score=49.43 Aligned_cols=72 Identities=18% Similarity=0.108 Sum_probs=47.8
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccc-eeeEEeCCcC-cHHHHHHHHHHHhhcC
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDL-KSWTCVSEDF-DIIWVTKSILKSIASD 245 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~il~~l~~~ 245 (423)
...++++.+..-. .-..+.|+|.+|+|||||++.+.+... .++=+. .+|+.+.+.. ++.++.+.+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3455777776422 224679999999999999999888431 222244 3676777654 6777888777755543
No 390
>PTZ00494 tuzin-like protein; Provisional
Probab=93.70 E-value=0.27 Score=48.34 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=57.9
Q ss_pred cccCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHH
Q 042891 156 LVNEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 156 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 235 (423)
......++.|+.+-..+...|..-+ ...++++.+.|.-|.||++|.+....... -..++|.+... ++-+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtL 435 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTL 435 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchH
Confidence 3456678999999888888886654 34688999999999999999988776432 24566766553 3346
Q ss_pred HHHHHHhhcCC
Q 042891 236 KSILKSIASDQ 246 (423)
Q Consensus 236 ~~il~~l~~~~ 246 (423)
+++++.++.+.
T Consensus 436 rsVVKALgV~n 446 (664)
T PTZ00494 436 RSVVRALGVSN 446 (664)
T ss_pred HHHHHHhCCCC
Confidence 66777666544
No 391
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.70 E-value=0.048 Score=45.58 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999875
No 392
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.67 E-value=0.054 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999998863
No 393
>PRK14528 adenylate kinase; Provisional
Probab=93.67 E-value=0.058 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999763
No 394
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.64 E-value=0.057 Score=48.29 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=25.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.+++|+|+.|.|||||++.+.... ......+++
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 59 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLF 59 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEE
Confidence 589999999999999999999732 233455555
No 395
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=93.63 E-value=0.053 Score=44.91 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|+|+|.+|+|||||...+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999998764
No 396
>PRK06526 transposase; Provisional
Probab=93.63 E-value=0.051 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-+.++|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999874
No 397
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.63 E-value=0.054 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|+|++|+||||+|+.+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999763
No 398
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=93.63 E-value=0.059 Score=48.52 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|+|.|+.|+||||+|+.+...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~ 25 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEK 25 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.62 E-value=0.056 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 400
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.056 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 401
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.61 E-value=0.056 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||++.+..-
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 402
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.60 E-value=0.057 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999973
No 403
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.59 E-value=0.087 Score=46.60 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=29.8
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|-+..+..+.-.... ..-|.++|++|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4567777777666665542 24789999999999999999865
No 404
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.58 E-value=0.056 Score=47.28 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+|+|++|+|||||...+.++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456699999999999999998864
No 405
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=93.57 E-value=0.059 Score=45.64 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEEccCCccHHHHHHHHHhcc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
-|.|+|.+|+|||||+..+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 406
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.57 E-value=0.06 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 49999999999999999999884
No 407
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.059 Score=48.30 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=93.57 E-value=0.24 Score=49.30 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=21.0
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|.++|++|+||||.+..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999997777655
No 409
>PRK09354 recA recombinase A; Provisional
Probab=93.56 E-value=0.093 Score=50.47 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=33.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDI 231 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 231 (423)
.-+++-|+|++|+||||||.++.... ...-..++|++....++.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHH
Confidence 45699999999999999999887633 333466788887776664
No 410
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=93.56 E-value=0.064 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
....|+|+|.+|+|||||...+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 45689999999999999999988753
No 411
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.53 E-value=0.32 Score=49.34 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=32.3
Q ss_pred CceeeecchHHHHHHHHhc--CC--CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLS--DD--LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~--~~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..++.+...... .. .-+-...+-|.++|++|+|||.+|+.+.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 3566766555555442110 00 001124567899999999999999999884
No 412
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.51 E-value=0.056 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999873
No 413
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.064 Score=48.38 Aligned_cols=52 Identities=31% Similarity=0.230 Sum_probs=36.9
Q ss_pred CceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.++=|.+-.+++|.+...-+-. -+-+.++-|.++|++|.|||.||+.|.|+.
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 3556777777777665432100 123456778999999999999999999964
No 414
>PRK05973 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.15 Score=46.32 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=32.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 238 (423)
.-.++.|.|.+|+|||+||.++.... .+ .=..+++++...+ ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~-a~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEA-MK-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH-Hh-cCCeEEEEEEeCC--HHHHHHHH
Confidence 34589999999999999999886643 22 2345667776654 34444443
No 415
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.50 E-value=0.061 Score=48.18 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||.+.+..-
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 416
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=0.056 Score=48.38 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=20.3
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+++|+|+.|.|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999987
No 417
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.48 E-value=0.062 Score=48.68 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 418
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.48 E-value=0.16 Score=46.39 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=34.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
.-+++.|.|.+|+|||+||.++.... . ..-..++|++...+ ..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeCC--HHHHHHH
Confidence 45799999999999999998865421 2 33467888887663 4444444
No 419
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=93.47 E-value=0.056 Score=47.61 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|+|.|+.|+||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 420
>PRK07952 DNA replication protein DnaC; Validated
Probab=93.47 E-value=0.065 Score=49.07 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=27.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV 225 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 225 (423)
...+.++|.+|+|||+||..+.+.. ...-..++++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it~ 135 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIITV 135 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEH
Confidence 4578999999999999999999853 222334555543
No 421
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.47 E-value=0.065 Score=57.51 Aligned_cols=51 Identities=25% Similarity=0.224 Sum_probs=37.1
Q ss_pred CceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..++.|.+++...-. -+-...+-|.++|++|+|||+||+.+++.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 3578999999888887642100 01123456889999999999999999884
No 422
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.46 E-value=0.063 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.++.
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5999999999999999999987
No 423
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.45 E-value=0.061 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 424
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.45 E-value=0.062 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999999873
No 425
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.45 E-value=0.096 Score=46.45 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=25.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.+++|+|+.|.|||||.+.+.... ......+++
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~ 60 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL---NPEKGEILF 60 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC---CCCCeeEEE
Confidence 589999999999999999998732 233444554
No 426
>PRK12338 hypothetical protein; Provisional
Probab=93.44 E-value=0.071 Score=50.54 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|.+|+||||+|+.+...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~ 27 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELART 27 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999874
No 427
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.44 E-value=0.093 Score=47.16 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=25.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.+++|+|..|.|||||.+.+..- .......+++
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl---~~~~~G~i~~ 64 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL---LEPDAGFATV 64 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC---cCCCCceEEE
Confidence 58999999999999999999873 2334555655
No 428
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.44 E-value=0.082 Score=45.68 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+..++.+.|+.|+|||.||+.+..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~ 25 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAE 25 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999876
No 429
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.43 E-value=0.063 Score=47.79 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 430
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=93.43 E-value=0.066 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|+|+|.+|+|||||...+.+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988875
No 431
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.43 E-value=0.057 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|+|.|.+|+||||+++.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998775
No 432
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=0.11 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.-.+|+|+|++|+||||++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999988876
No 433
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.40 E-value=0.066 Score=48.30 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999999873
No 434
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.39 E-value=0.37 Score=46.20 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=47.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc-HHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD-IIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLC 266 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~ 266 (423)
..++|.|..|+|||+|++++.+.. +-+.++++-+++..+ +.+++.++-+.. .... +...++..-+++.|.+..
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~~l~-~~~~-~~~~m~rtvlV~nts~~p 231 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFPELT-DPVT-GEPLMKRTVLIANTSNMP 231 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHHhhc-cccc-cCCccceEEEEEECCCCC
Confidence 489999999999999999999843 335778888877653 344544443322 1111 222233333666666665
Q ss_pred HHhh
Q 042891 267 VVEK 270 (423)
Q Consensus 267 v~~~ 270 (423)
++..
T Consensus 232 ~~~R 235 (369)
T cd01134 232 VAAR 235 (369)
T ss_pred HHHH
Confidence 5443
No 435
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=93.38 E-value=0.067 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhcc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
-|.++|.+|+|||||...+.++.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999987643
No 436
>PLN02924 thymidylate kinase
Probab=93.38 E-value=0.24 Score=44.74 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVR 212 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~ 212 (423)
.-..|+|-|..|+||||+++.+.+...
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999988543
No 437
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=93.37 E-value=0.065 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|.+|+|||||...+.+.
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 438
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=93.37 E-value=0.1 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.-+|+|+|..|+|||||+..+...
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~ 28 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRR 28 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4569999999999999999998873
No 439
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.36 E-value=0.07 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=20.1
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..|+|+|+.|+||||+++.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~ 23 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQ 23 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 440
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.36 E-value=0.066 Score=48.27 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=25.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.+++|+|+.|.|||||.+.++... ......+++
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~---~~~~G~i~~ 64 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD---NPTSGEVLF 64 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEE
Confidence 489999999999999999998732 233444554
No 441
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.1 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 442
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.35 E-value=0.099 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 443
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.35 E-value=0.064 Score=45.24 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEccCCccHHHHHHHHHhcc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~ 211 (423)
|+|+|.+|+|||||...+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 444
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.33 E-value=0.1 Score=43.62 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 58999999999999999999874
No 445
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.32 E-value=0.057 Score=51.80 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=27.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeC
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVS 226 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 226 (423)
.-+.++|..|+|||.||..+.+.. ...-..++++++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHH
Confidence 569999999999999999999853 2222345666543
No 446
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.32 E-value=0.068 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhcc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.|.|+|.+|+|||||...+.+..
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36799999999999999998753
No 447
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.32 E-value=0.067 Score=48.04 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 448
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.31 E-value=0.066 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+++|||-.|+|||||++.+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc
Confidence 35899999999999999999987
No 449
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=93.30 E-value=0.067 Score=50.06 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.0
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|.|-||+||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 5889999999999999887655
No 450
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.27 E-value=0.069 Score=49.13 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|+|||||.+.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 451
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.26 E-value=0.076 Score=45.09 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..|+|.|++|+||+||-+.|++
T Consensus 30 e~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh
Confidence 3799999999999999999998
No 452
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.26 E-value=0.07 Score=48.55 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 453
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.25 E-value=0.071 Score=47.44 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.+..-
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 454
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.25 E-value=0.07 Score=48.57 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.++.-
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 455
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.25 E-value=0.071 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||.+.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999874
No 456
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.32 Score=50.36 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=29.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE 227 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 227 (423)
..-|-|.|+.|+|||+||+.+++... +++.-.+..|+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCST 470 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechh
Confidence 34688999999999999999998544 44444455665544
No 457
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=93.22 E-value=0.071 Score=45.22 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.6
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-|.|+|.+|+|||||+..+.+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998865
No 458
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.071 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 459
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=93.22 E-value=0.069 Score=49.99 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=19.0
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|.|-||+||||++..+..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998877655
No 460
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=93.21 E-value=0.071 Score=47.68 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.3
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|+|+||.|+||||+|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998854
No 461
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.21 E-value=0.073 Score=47.41 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||.+.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 462
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.21 E-value=0.13 Score=51.03 Aligned_cols=51 Identities=29% Similarity=0.325 Sum_probs=35.2
Q ss_pred CCceeeecchHHHHHHHHhc-------CCC---CCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 159 EAKVYGRDKEKEETVELLLS-------DDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~-------~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+..++|.+..++.+...+.. ... ...-....|.++|++|+|||+||+.+..
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 34689999888887555421 000 0011235689999999999999999976
No 463
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.20 E-value=0.068 Score=46.83 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.|-+.|.+|+||||+|+++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3577899999999999999877
No 464
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.20 E-value=0.069 Score=45.47 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=18.1
Q ss_pred EEEEccCCccHHHHHHHHHh
Q 042891 190 IPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~ 209 (423)
|.|+|..|+|||||..++..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 78999999999999998865
No 465
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=93.19 E-value=0.067 Score=45.20 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.6
Q ss_pred EEEEccCCccHHHHHHHHHh
Q 042891 190 IPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~ 209 (423)
|+++|..|+|||||...+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 466
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.19 E-value=0.11 Score=46.60 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=25.5
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWT 223 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv 223 (423)
.+++|+|..|.|||||.+.++... ......+++
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~ 57 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGFI---EPASGSIKV 57 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC---CCCCcEEEE
Confidence 589999999999999999999732 233445554
No 467
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.19 E-value=0.074 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999974
No 468
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=93.18 E-value=0.08 Score=42.54 Aligned_cols=21 Identities=52% Similarity=0.795 Sum_probs=19.1
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.+.|.||+||||++..+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998874
No 469
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.17 E-value=0.12 Score=53.38 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=32.3
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+..+.|.+..+.|.++.- + ...+-.+|.|+|+.|+||||+|+.++..
T Consensus 369 P~~f~rpeV~~iL~~~~~-~---r~~~g~~Ivl~Gl~GSGKSTia~~La~~ 415 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYP-P---RHKQGFTVFFTGLSGAGKSTIAKALMVK 415 (568)
T ss_pred ChhhcHHHHHHHHHHHhc-c---ccCCCeEEEEECCCCChHHHHHHHHHHH
Confidence 344555555554444432 2 2344558999999999999999999874
No 470
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=93.16 E-value=0.091 Score=49.37 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=20.6
Q ss_pred CceEEEEEccCCccHHHHHHHHH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVY 208 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~ 208 (423)
...+|.|.|+.|+||||+++.+.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH
Confidence 34699999999999999999985
No 471
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.16 E-value=0.074 Score=48.35 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||++.+..-
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 472
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.16 E-value=0.072 Score=48.23 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 473
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.16 E-value=0.081 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|+|+|.+|+|||||+..+.+.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988753
No 474
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.16 E-value=0.11 Score=47.60 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||++.+..-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 475
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=93.16 E-value=0.075 Score=45.31 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.3
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.++|.+|+|||||.+.+.+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 476
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.15 E-value=0.07 Score=45.55 Aligned_cols=20 Identities=30% Similarity=0.590 Sum_probs=18.7
Q ss_pred EEEEccCCccHHHHHHHHHh
Q 042891 190 IPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~ 209 (423)
|+|+|.+|+|||||...+.+
T Consensus 3 v~ivG~~~~GKStl~~~l~~ 22 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISN 22 (170)
T ss_pred eEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999975
No 477
>PRK06921 hypothetical protein; Provisional
Probab=93.13 E-value=0.11 Score=48.40 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=27.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccC-ccceeeEEe
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNH-FDLKSWTCV 225 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~-F~~~~wv~v 225 (423)
...+.++|..|+|||+||..+.+. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 457899999999999999999984 3332 344566664
No 478
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.078 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||.+.+...
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 59999999999999999999863
No 479
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.09 E-value=2.3 Score=39.25 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=92.9
Q ss_pred eeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccc----cccCccceeeEE----------eCC
Q 042891 162 VYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR----VHNHFDLKSWTC----------VSE 227 (423)
Q Consensus 162 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~----~~~~F~~~~wv~----------vs~ 227 (423)
+.++++....+..... ....+-..++|+.|.||-|.+..+.+..- -+-.-+.+-|.+ +|.
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666553 23567889999999999998776655220 011112233332 222
Q ss_pred c-----------CcHHHHHHHHHHHhhcCCCCCcCCCCcee-------------------------------eEeccCCH
Q 042891 228 D-----------FDIIWVTKSILKSIASDQLVDDRDLNLLQ-------------------------------IVITTRNL 265 (423)
Q Consensus 228 ~-----------~~~~~~~~~il~~l~~~~~~~~~~~~~l~-------------------------------ilvTTR~~ 265 (423)
+ +...-+.++|++.+.....-+...-...+ |++--...
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTS 168 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcc
Confidence 1 11233556666666543321111111111 22211111
Q ss_pred HHHhhcCCC-CcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcC---------
Q 042891 266 CVVEKTGTL-PAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVK--------- 335 (423)
Q Consensus 266 ~v~~~~~~~-~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~--------- 335 (423)
.+...+.+. -.+.+...+++|-...+++..-...-.- | .+++.+|+++++|.---...+--.++.+
T Consensus 169 riIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l--p--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~ 244 (351)
T KOG2035|consen 169 RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL--P--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQ 244 (351)
T ss_pred cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC--c--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCC
Confidence 111111111 2477888999999999888763322111 2 6889999999999654333333333322
Q ss_pred -CChhHHHHHHcc
Q 042891 336 -YDPNDWEDVHNC 347 (423)
Q Consensus 336 -~~~~~W~~~~~~ 347 (423)
...-+|+-+...
T Consensus 245 ~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 245 VIPKPDWEIYIQE 257 (351)
T ss_pred CCCCccHHHHHHH
Confidence 234588877665
No 480
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=93.08 E-value=0.079 Score=45.12 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.4
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|+|.+|+|||||...+.++
T Consensus 2 i~vvG~~~~GKtsli~~~~~~ 22 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTK 22 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 789999999999999887653
No 481
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.07 E-value=0.15 Score=50.44 Aligned_cols=50 Identities=30% Similarity=0.321 Sum_probs=35.6
Q ss_pred CCceeeecchHHHHHHHHh-------c--CCCCCC----CCceEEEEEccCCccHHHHHHHHHh
Q 042891 159 EAKVYGRDKEKEETVELLL-------S--DDLRTD----DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~-------~--~~~~~~----~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+..++|.+..++.+...+. . ... .. .....|.++|++|+|||+||+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~-~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK-SDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccc-cccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 4568999988888866551 1 010 00 1235799999999999999999986
No 482
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=93.07 E-value=0.078 Score=45.50 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-|.++|.+|+|||||...+...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~ 25 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAG 25 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 483
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.07 E-value=0.11 Score=55.56 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=38.1
Q ss_pred CceeeecchHHHHHHHHhcCCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|-+..++.|.+.+..... +.+....++.++|+.|+|||+||+.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 4678988888888888764211 01224557899999999999999999873
No 484
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=93.07 E-value=0.09 Score=46.67 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|+|.|+.|.|||||.+.+.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999873
No 485
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.07 E-value=0.1 Score=50.56 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.++|+++|+.|+||||++..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999888764
No 486
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=93.07 E-value=0.079 Score=49.25 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
++|+|.|-||+||||++..+...
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~ 25 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAA 25 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 58999999999999999998874
No 487
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.06 E-value=0.12 Score=48.04 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=29.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED 228 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 228 (423)
.-+++.|.|.+|+|||+||.++.... . ..=..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~-a-~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ-A-SRGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hCCCcEEEEEecCC
Confidence 34699999999999999999875532 1 22346778887643
No 488
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=93.06 E-value=0.08 Score=45.01 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.0
Q ss_pred EEEEccCCccHHHHHHHHHh
Q 042891 190 IPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~ 209 (423)
|+++|.+|+|||||...+..
T Consensus 3 i~vvG~~gvGKTsli~~~~~ 22 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYLT 22 (158)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999988765
No 489
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.05 E-value=0.12 Score=46.58 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=25.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEE
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTC 224 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~ 224 (423)
.+++|+|..|.|||||.+.++.-. ......+++.
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~i~~~ 68 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYANY---LPDSGRILVR 68 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCCeEEEe
Confidence 589999999999999999998732 2344555553
No 490
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.05 E-value=0.076 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+.|+|.+|+||||+|+.+.+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 35699999999999999998854
No 491
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=93.05 E-value=0.076 Score=45.38 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=19.0
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998864
No 492
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.04 E-value=0.073 Score=48.51 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcC
Confidence 5899999999999999999987
No 493
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.04 E-value=0.092 Score=50.42 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=34.9
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+-..++|.+..++.+.-.+... +..-+.+.|.+|.||||+|+.+.+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDP------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhcc------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 4457899998888777555422 233589999999999999999855
No 494
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.03 E-value=0.079 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||++.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 495
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=93.01 E-value=0.08 Score=44.73 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|+|+|.+|+|||||...+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 799999999999999999875
No 496
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.01 E-value=0.086 Score=45.59 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999873
No 497
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.01 E-value=0.081 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999884
No 498
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.00 E-value=0.24 Score=45.00 Aligned_cols=52 Identities=23% Similarity=0.172 Sum_probs=32.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
-.++.|.|.+|.||||||.++.... .+.. ..+++++... +..++++.+ .+++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 4599999999999999986665432 2222 3456666433 345555555 3443
No 499
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=92.99 E-value=0.078 Score=49.39 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=17.8
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|++.|-||+||||++..+..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 588889999999998877654
No 500
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.99 E-value=0.079 Score=48.16 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.++.-
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999973
Done!