Query 042891
Match_columns 423
No_of_seqs 310 out of 2177
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.3E-41 2.1E-45 343.2 19.8 246 163-421 131-449 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.9E-32 1.3E-36 284.7 13.9 230 161-419 129-421 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 8.8E-31 3E-35 292.3 19.4 242 157-421 121-430 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 1.8E-27 6.2E-32 246.0 17.7 237 158-419 122-428 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.5 3.4E-14 1.2E-18 113.2 5.5 70 6-75 1-72 (115)
6 1w5s_A Origin recognition comp 99.1 9.8E-10 3.4E-14 107.7 15.7 252 160-419 22-372 (412)
7 2qen_A Walker-type ATPase; unk 99.0 3.9E-09 1.3E-13 100.8 13.2 231 158-418 10-333 (350)
8 2fna_A Conserved hypothetical 98.9 5.2E-09 1.8E-13 100.2 11.7 229 158-419 11-342 (357)
9 1hqc_A RUVB; extended AAA-ATPa 98.9 3.4E-09 1.2E-13 100.4 9.1 248 160-417 12-324 (324)
10 2v1u_A Cell division control p 98.8 7.5E-08 2.6E-12 93.2 14.1 242 160-418 19-351 (387)
11 1njg_A DNA polymerase III subu 98.8 5.5E-08 1.9E-12 87.3 11.9 163 160-332 23-231 (250)
12 1fnn_A CDC6P, cell division co 98.7 4.1E-07 1.4E-11 88.1 17.5 248 160-420 17-353 (389)
13 2chg_A Replication factor C sm 98.7 3.1E-07 1.1E-11 81.2 13.6 158 160-329 17-204 (226)
14 2qby_A CDC6 homolog 1, cell di 98.6 3.4E-08 1.2E-12 95.5 6.6 161 159-326 19-242 (386)
15 2qby_B CDC6 homolog 3, cell di 98.6 3.2E-07 1.1E-11 88.8 13.0 179 160-347 20-269 (384)
16 1sxj_B Activator 1 37 kDa subu 98.4 4.3E-07 1.5E-11 85.6 7.0 160 160-331 21-212 (323)
17 3pfi_A Holliday junction ATP-d 98.1 7.9E-05 2.7E-09 70.6 16.3 160 159-328 28-226 (338)
18 1iqp_A RFCS; clamp loader, ext 98.0 8.1E-06 2.8E-10 76.8 7.7 156 160-330 25-213 (327)
19 3bos_A Putative DNA replicatio 98.0 5E-05 1.7E-09 67.8 11.9 149 160-328 28-216 (242)
20 1jr3_A DNA polymerase III subu 97.9 4.4E-05 1.5E-09 73.2 10.0 160 160-329 16-221 (373)
21 2chq_A Replication factor C sm 97.8 6E-05 2.1E-09 70.5 8.9 158 160-328 17-203 (319)
22 1sxj_A Activator 1 95 kDa subu 97.8 0.00075 2.6E-08 67.8 17.1 51 160-210 39-100 (516)
23 1sxj_D Activator 1 41 kDa subu 97.7 0.00011 3.8E-09 69.9 9.8 156 159-328 36-234 (353)
24 1jbk_A CLPB protein; beta barr 97.7 3.1E-05 1.1E-09 66.3 4.8 45 160-210 22-66 (195)
25 3h4m_A Proteasome-activating n 97.6 0.00012 4.1E-09 67.5 8.4 52 159-210 16-74 (285)
26 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00031 1E-08 63.7 10.6 51 160-210 6-62 (262)
27 2p65_A Hypothetical protein PF 97.6 4.6E-05 1.6E-09 65.1 4.4 45 160-210 22-66 (187)
28 3pvs_A Replication-associated 97.4 0.00022 7.6E-09 70.2 7.5 154 160-326 26-212 (447)
29 3te6_A Regulatory protein SIR3 97.4 8.4E-05 2.9E-09 69.6 4.2 81 160-243 20-106 (318)
30 2z4s_A Chromosomal replication 97.4 0.00061 2.1E-08 67.0 9.8 155 187-349 130-333 (440)
31 3uk6_A RUVB-like 2; hexameric 97.3 0.0022 7.6E-08 61.2 12.8 49 159-211 43-94 (368)
32 1d2n_A N-ethylmaleimide-sensit 97.3 0.0047 1.6E-07 56.3 13.9 48 160-210 33-87 (272)
33 3eie_A Vacuolar protein sortin 97.2 0.0018 6E-08 60.9 10.6 52 159-210 17-74 (322)
34 3b9p_A CG5977-PA, isoform A; A 97.2 0.0028 9.4E-08 58.6 11.7 51 160-210 21-77 (297)
35 2qp9_X Vacuolar protein sortin 97.2 0.0044 1.5E-07 59.0 13.1 51 160-210 51-107 (355)
36 3d8b_A Fidgetin-like protein 1 97.1 0.0048 1.6E-07 58.8 12.3 51 160-210 84-140 (357)
37 1sxj_C Activator 1 40 kDa subu 97.1 0.0023 7.7E-08 60.6 9.9 154 160-325 25-208 (340)
38 4b4t_L 26S protease subunit RP 97.0 0.0042 1.4E-07 60.6 11.1 153 160-322 181-387 (437)
39 1l8q_A Chromosomal replication 97.0 0.0062 2.1E-07 57.0 12.0 25 186-210 36-60 (324)
40 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0083 2.8E-07 56.3 12.8 52 159-210 11-68 (322)
41 1a5t_A Delta prime, HOLB; zinc 96.9 0.0059 2E-07 57.6 11.6 147 167-329 9-205 (334)
42 3n70_A Transport activator; si 96.9 0.0006 2.1E-08 56.0 3.6 46 161-210 2-47 (145)
43 3vfd_A Spastin; ATPase, microt 96.8 0.0053 1.8E-07 59.2 10.2 52 159-210 114-171 (389)
44 4b4t_J 26S protease regulatory 96.8 0.0051 1.7E-07 59.1 9.7 153 160-322 148-354 (405)
45 2zan_A Vacuolar protein sortin 96.8 0.011 3.8E-07 58.0 12.4 52 159-210 133-190 (444)
46 4b4t_K 26S protease regulatory 96.7 0.0033 1.1E-07 61.1 7.9 52 159-210 171-229 (428)
47 3pxg_A Negative regulator of g 96.7 0.00094 3.2E-08 66.3 3.9 45 160-210 180-224 (468)
48 2w58_A DNAI, primosome compone 96.6 0.0018 6.1E-08 56.2 4.7 54 168-225 37-90 (202)
49 1rz3_A Hypothetical protein rb 96.6 0.002 6.9E-08 56.0 4.9 42 165-209 3-44 (201)
50 4b4t_H 26S protease regulatory 96.5 0.0098 3.4E-07 58.0 9.8 51 160-210 209-266 (467)
51 3syl_A Protein CBBX; photosynt 96.5 0.0021 7.1E-08 59.7 4.7 50 161-210 32-90 (309)
52 2gno_A DNA polymerase III, gam 96.5 0.0071 2.4E-07 56.3 8.1 124 164-295 1-152 (305)
53 4b4t_M 26S protease regulatory 96.4 0.0018 6.3E-08 63.0 4.1 51 160-210 181-238 (434)
54 4b4t_I 26S protease regulatory 96.4 0.0055 1.9E-07 59.3 6.8 51 160-210 182-239 (437)
55 3co5_A Putative two-component 96.3 0.00082 2.8E-08 55.1 0.8 47 160-210 4-50 (143)
56 3cf0_A Transitional endoplasmi 96.2 0.0029 9.9E-08 58.8 4.1 51 160-210 15-72 (301)
57 3lw7_A Adenylate kinase relate 96.2 0.0022 7.4E-08 53.9 3.0 20 188-207 2-21 (179)
58 3c8u_A Fructokinase; YP_612366 96.2 0.0039 1.3E-07 54.4 4.6 37 169-209 8-44 (208)
59 1in4_A RUVB, holliday junction 96.2 0.0014 4.8E-08 61.9 1.8 163 160-328 25-222 (334)
60 3ec2_A DNA replication protein 96.2 0.0023 7.9E-08 54.4 2.8 24 187-210 38-61 (180)
61 1odf_A YGR205W, hypothetical 3 96.2 0.0036 1.2E-07 57.8 4.3 25 185-209 29-53 (290)
62 3pxi_A Negative regulator of g 96.1 0.003 1E-07 66.6 3.9 45 160-210 180-224 (758)
63 3kb2_A SPBC2 prophage-derived 96.1 0.003 1E-07 53.0 3.2 23 188-210 2-24 (173)
64 1gvn_B Zeta; postsegregational 96.1 0.006 2E-07 56.3 5.3 41 168-209 15-55 (287)
65 1zp6_A Hypothetical protein AT 96.1 0.0037 1.3E-07 53.5 3.7 24 187-210 9-32 (191)
66 1qhx_A CPT, protein (chloramph 96.1 0.0032 1.1E-07 53.2 3.2 23 188-210 4-26 (178)
67 1ly1_A Polynucleotide kinase; 96.0 0.0036 1.2E-07 52.9 3.5 22 188-209 3-24 (181)
68 1qvr_A CLPB protein; coiled co 96.0 0.0027 9.2E-08 67.8 3.1 45 160-210 170-214 (854)
69 3u61_B DNA polymerase accessor 96.0 0.0056 1.9E-07 57.3 5.0 47 159-210 25-71 (324)
70 1kgd_A CASK, peripheral plasma 96.0 0.0035 1.2E-07 53.4 3.2 22 188-209 6-27 (180)
71 1ofh_A ATP-dependent HSL prote 96.0 0.0032 1.1E-07 58.3 3.2 51 160-210 15-73 (310)
72 3vaa_A Shikimate kinase, SK; s 96.0 0.0038 1.3E-07 54.1 3.4 23 187-209 25-47 (199)
73 2r62_A Cell division protease 96.0 0.0043 1.5E-07 56.3 3.8 52 159-210 10-67 (268)
74 2bjv_A PSP operon transcriptio 96.0 0.004 1.4E-07 56.5 3.7 47 160-210 6-52 (265)
75 1r6b_X CLPA protein; AAA+, N-t 96.0 0.005 1.7E-07 64.9 4.8 45 160-210 186-230 (758)
76 1kag_A SKI, shikimate kinase I 96.0 0.0032 1.1E-07 52.9 2.8 23 188-210 5-27 (173)
77 2p5t_B PEZT; postsegregational 95.9 0.0065 2.2E-07 54.8 4.9 42 168-210 14-55 (253)
78 3cf2_A TER ATPase, transitiona 95.9 0.025 8.5E-07 59.4 9.6 51 160-210 204-261 (806)
79 4fcw_A Chaperone protein CLPB; 95.9 0.0061 2.1E-07 56.5 4.6 50 161-210 18-70 (311)
80 3uie_A Adenylyl-sulfate kinase 95.9 0.0052 1.8E-07 53.2 3.9 25 186-210 24-48 (200)
81 3tqc_A Pantothenate kinase; bi 95.9 0.006 2.1E-07 57.0 4.5 44 164-209 71-114 (321)
82 1knq_A Gluconate kinase; ALFA/ 95.9 0.0064 2.2E-07 51.3 4.2 24 186-209 7-30 (175)
83 1sxj_E Activator 1 40 kDa subu 95.9 0.0046 1.6E-07 58.6 3.6 45 160-209 14-58 (354)
84 1lv7_A FTSH; alpha/beta domain 95.8 0.0056 1.9E-07 55.2 4.0 52 159-210 11-68 (257)
85 3trf_A Shikimate kinase, SK; a 95.8 0.0047 1.6E-07 52.6 3.2 23 187-209 5-27 (185)
86 2r44_A Uncharacterized protein 95.8 0.0052 1.8E-07 57.8 3.6 42 160-209 27-68 (331)
87 3asz_A Uridine kinase; cytidin 95.8 0.0056 1.9E-07 53.4 3.5 24 186-209 5-28 (211)
88 3tr0_A Guanylate kinase, GMP k 95.8 0.0051 1.7E-07 53.2 3.2 22 188-209 8-29 (205)
89 4eun_A Thermoresistant glucoki 95.7 0.0056 1.9E-07 53.0 3.4 25 186-210 28-52 (200)
90 2qt1_A Nicotinamide riboside k 95.7 0.0071 2.4E-07 52.6 4.1 25 186-210 20-44 (207)
91 3t61_A Gluconokinase; PSI-biol 95.7 0.0044 1.5E-07 53.7 2.7 24 187-210 18-41 (202)
92 1nks_A Adenylate kinase; therm 95.7 0.0056 1.9E-07 52.3 3.3 23 188-210 2-24 (194)
93 1uf9_A TT1252 protein; P-loop, 95.7 0.0064 2.2E-07 52.5 3.7 25 185-209 6-30 (203)
94 2rhm_A Putative kinase; P-loop 95.7 0.0065 2.2E-07 52.0 3.6 24 187-210 5-28 (193)
95 4gp7_A Metallophosphoesterase; 95.7 0.0052 1.8E-07 51.8 2.9 23 187-209 9-31 (171)
96 2bdt_A BH3686; alpha-beta prot 95.7 0.0063 2.2E-07 52.0 3.4 22 188-209 3-24 (189)
97 3tau_A Guanylate kinase, GMP k 95.6 0.0067 2.3E-07 52.9 3.6 24 187-210 8-31 (208)
98 1ojl_A Transcriptional regulat 95.6 0.0066 2.2E-07 56.5 3.7 47 160-210 2-48 (304)
99 2c9o_A RUVB-like 1; hexameric 95.6 0.0071 2.4E-07 59.7 4.1 48 159-210 36-86 (456)
100 1kht_A Adenylate kinase; phosp 95.6 0.0063 2.1E-07 51.9 3.2 23 188-210 4-26 (192)
101 1ukz_A Uridylate kinase; trans 95.6 0.0082 2.8E-07 51.9 4.0 25 186-210 14-38 (203)
102 2j41_A Guanylate kinase; GMP, 95.6 0.0071 2.4E-07 52.4 3.6 24 187-210 6-29 (207)
103 2jaq_A Deoxyguanosine kinase; 95.6 0.0063 2.2E-07 52.5 3.2 22 189-210 2-23 (205)
104 3a00_A Guanylate kinase, GMP k 95.6 0.0055 1.9E-07 52.4 2.8 22 188-209 2-23 (186)
105 3iij_A Coilin-interacting nucl 95.6 0.0061 2.1E-07 51.7 3.0 24 187-210 11-34 (180)
106 1cke_A CK, MSSA, protein (cyti 95.6 0.0066 2.2E-07 53.5 3.2 22 188-209 6-27 (227)
107 2qor_A Guanylate kinase; phosp 95.6 0.0062 2.1E-07 52.9 3.0 25 186-210 11-35 (204)
108 3t15_A Ribulose bisphosphate c 95.6 0.008 2.8E-07 55.5 3.9 25 186-210 35-59 (293)
109 2cvh_A DNA repair and recombin 95.5 0.013 4.5E-07 51.1 5.1 44 187-235 20-63 (220)
110 2if2_A Dephospho-COA kinase; a 95.5 0.0067 2.3E-07 52.6 3.1 22 188-209 2-23 (204)
111 2ze6_A Isopentenyl transferase 95.5 0.0071 2.4E-07 54.6 3.4 23 188-210 2-24 (253)
112 1tev_A UMP-CMP kinase; ploop, 95.5 0.0077 2.6E-07 51.5 3.5 22 188-209 4-25 (196)
113 3hws_A ATP-dependent CLP prote 95.5 0.0098 3.4E-07 56.7 4.5 50 161-210 16-74 (363)
114 1ye8_A Protein THEP1, hypothet 95.5 0.0073 2.5E-07 51.4 3.2 22 189-210 2-23 (178)
115 1zuh_A Shikimate kinase; alpha 95.5 0.0073 2.5E-07 50.5 3.2 24 186-209 6-29 (168)
116 2kjq_A DNAA-related protein; s 95.5 0.0054 1.8E-07 50.5 2.2 25 187-211 36-60 (149)
117 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0081 2.8E-07 59.8 3.9 42 161-210 23-64 (500)
118 2c95_A Adenylate kinase 1; tra 95.5 0.0079 2.7E-07 51.6 3.4 23 187-209 9-31 (196)
119 1via_A Shikimate kinase; struc 95.5 0.0064 2.2E-07 51.3 2.8 22 189-210 6-27 (175)
120 1xjc_A MOBB protein homolog; s 95.5 0.0081 2.8E-07 50.6 3.3 25 186-210 3-27 (169)
121 1y63_A LMAJ004144AAA protein; 95.5 0.0095 3.2E-07 50.8 3.8 25 186-210 9-33 (184)
122 1ex7_A Guanylate kinase; subst 95.5 0.0088 3E-07 51.3 3.5 22 188-209 2-23 (186)
123 2iyv_A Shikimate kinase, SK; t 95.4 0.0063 2.2E-07 51.7 2.6 22 188-209 3-24 (184)
124 1jjv_A Dephospho-COA kinase; P 95.4 0.0084 2.9E-07 52.0 3.4 22 188-209 3-24 (206)
125 1n0w_A DNA repair protein RAD5 95.4 0.022 7.5E-07 50.5 6.3 55 187-242 24-82 (243)
126 1lvg_A Guanylate kinase, GMP k 95.4 0.0068 2.3E-07 52.5 2.8 22 188-209 5-26 (198)
127 1uj2_A Uridine-cytidine kinase 95.4 0.009 3.1E-07 53.8 3.6 25 185-209 20-44 (252)
128 2ga8_A Hypothetical 39.9 kDa p 95.4 0.013 4.6E-07 55.2 4.9 42 166-209 5-46 (359)
129 2yvu_A Probable adenylyl-sulfa 95.4 0.012 4.1E-07 50.1 4.2 25 186-210 12-36 (186)
130 2bbw_A Adenylate kinase 4, AK4 95.4 0.0087 3E-07 53.6 3.4 23 187-209 27-49 (246)
131 3cm0_A Adenylate kinase; ATP-b 95.4 0.0092 3.2E-07 50.7 3.4 22 188-209 5-26 (186)
132 3aez_A Pantothenate kinase; tr 95.3 0.01 3.6E-07 55.3 3.8 24 186-209 89-112 (312)
133 1e6c_A Shikimate kinase; phosp 95.3 0.0081 2.8E-07 50.4 2.8 23 188-210 3-25 (173)
134 2bwj_A Adenylate kinase 5; pho 95.3 0.0089 3E-07 51.4 3.1 23 188-210 13-35 (199)
135 2cdn_A Adenylate kinase; phosp 95.3 0.012 3.9E-07 50.9 3.8 25 186-210 19-43 (201)
136 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.01 3.5E-07 53.7 3.6 24 187-210 4-27 (260)
137 1qf9_A UMP/CMP kinase, protein 95.3 0.013 4.3E-07 50.0 4.0 23 187-209 6-28 (194)
138 1rj9_A FTSY, signal recognitio 95.3 0.011 3.9E-07 54.8 3.9 24 186-209 101-124 (304)
139 1aky_A Adenylate kinase; ATP:A 95.3 0.01 3.5E-07 52.1 3.4 24 187-210 4-27 (220)
140 2plr_A DTMP kinase, probable t 95.2 0.01 3.6E-07 51.4 3.4 23 188-210 5-27 (213)
141 3umf_A Adenylate kinase; rossm 95.2 0.014 4.8E-07 51.3 4.1 26 185-210 27-52 (217)
142 2pt5_A Shikimate kinase, SK; a 95.2 0.011 3.6E-07 49.4 3.2 21 189-209 2-22 (168)
143 1znw_A Guanylate kinase, GMP k 95.2 0.01 3.4E-07 51.7 3.2 22 188-209 21-42 (207)
144 2grj_A Dephospho-COA kinase; T 95.2 0.012 4.2E-07 50.6 3.6 24 186-209 11-34 (192)
145 2jeo_A Uridine-cytidine kinase 95.2 0.012 4.2E-07 52.7 3.8 24 186-209 24-47 (245)
146 3fwy_A Light-independent proto 95.2 0.011 3.8E-07 55.1 3.6 25 185-209 46-70 (314)
147 2pbr_A DTMP kinase, thymidylat 95.2 0.011 3.6E-07 50.6 3.2 22 189-210 2-23 (195)
148 2z0h_A DTMP kinase, thymidylat 95.2 0.025 8.6E-07 48.3 5.6 22 189-210 2-23 (197)
149 3ney_A 55 kDa erythrocyte memb 95.2 0.011 3.8E-07 51.1 3.2 24 186-209 18-41 (197)
150 2vli_A Antibiotic resistance p 95.1 0.0086 3E-07 50.7 2.4 24 187-210 5-28 (183)
151 1z6g_A Guanylate kinase; struc 95.1 0.0098 3.3E-07 52.3 2.8 22 188-209 24-45 (218)
152 1sq5_A Pantothenate kinase; P- 95.1 0.025 8.4E-07 52.6 5.5 24 186-209 79-102 (308)
153 4e22_A Cytidylate kinase; P-lo 95.0 0.012 4E-07 53.1 3.2 23 187-209 27-49 (252)
154 1gtv_A TMK, thymidylate kinase 95.0 0.0076 2.6E-07 52.5 1.9 22 189-210 2-23 (214)
155 1nn5_A Similar to deoxythymidy 95.0 0.014 4.7E-07 50.8 3.5 24 187-210 9-32 (215)
156 3hu3_A Transitional endoplasmi 95.0 0.013 4.4E-07 58.3 3.6 51 160-210 204-261 (489)
157 2vhj_A Ntpase P4, P4; non- hyd 95.0 0.03 1E-06 52.1 5.7 52 187-243 123-181 (331)
158 2pez_A Bifunctional 3'-phospho 95.0 0.015 5.3E-07 49.1 3.6 23 187-209 5-27 (179)
159 1g8p_A Magnesium-chelatase 38 95.0 0.0092 3.1E-07 56.3 2.4 45 160-210 24-68 (350)
160 2wwf_A Thymidilate kinase, put 95.0 0.015 5.3E-07 50.4 3.7 24 187-210 10-33 (212)
161 1htw_A HI0065; nucleotide-bind 95.0 0.015 5.2E-07 48.3 3.4 23 187-209 33-55 (158)
162 2hf9_A Probable hydrogenase ni 94.9 0.015 5.3E-07 51.0 3.6 25 186-210 37-61 (226)
163 2f6r_A COA synthase, bifunctio 94.9 0.016 5.6E-07 53.1 3.8 24 186-209 74-97 (281)
164 2x8a_A Nuclear valosin-contain 94.9 0.013 4.5E-07 53.5 3.0 21 190-210 47-67 (274)
165 1zd8_A GTP:AMP phosphotransfer 94.9 0.014 4.9E-07 51.5 3.2 23 187-209 7-29 (227)
166 2f1r_A Molybdopterin-guanine d 94.9 0.011 3.7E-07 50.0 2.2 23 188-210 3-25 (171)
167 1s96_A Guanylate kinase, GMP k 94.8 0.015 5.1E-07 51.3 3.2 24 187-210 16-39 (219)
168 3fb4_A Adenylate kinase; psych 94.8 0.015 5.1E-07 50.8 3.2 22 189-210 2-23 (216)
169 4a74_A DNA repair and recombin 94.8 0.015 5.2E-07 51.1 3.3 45 187-231 25-73 (231)
170 1vht_A Dephospho-COA kinase; s 94.8 0.019 6.4E-07 50.3 3.8 23 187-209 4-26 (218)
171 1ixz_A ATP-dependent metallopr 94.8 0.014 4.8E-07 52.5 3.0 21 190-210 52-72 (254)
172 2ehv_A Hypothetical protein PH 94.8 0.015 5.1E-07 51.9 3.1 22 188-209 31-52 (251)
173 1zak_A Adenylate kinase; ATP:A 94.8 0.015 5.1E-07 51.1 3.0 24 187-210 5-28 (222)
174 2i3b_A HCR-ntpase, human cance 94.8 0.014 4.9E-07 50.1 2.8 23 189-211 3-25 (189)
175 1m7g_A Adenylylsulfate kinase; 94.7 0.019 6.6E-07 50.0 3.7 24 187-210 25-48 (211)
176 2v54_A DTMP kinase, thymidylat 94.7 0.016 5.6E-07 49.9 3.2 23 188-210 5-27 (204)
177 3dl0_A Adenylate kinase; phosp 94.7 0.017 5.7E-07 50.5 3.2 21 189-209 2-22 (216)
178 3sr0_A Adenylate kinase; phosp 94.7 0.027 9.1E-07 49.1 4.5 22 189-210 2-23 (206)
179 1tue_A Replication protein E1; 94.7 0.03 1E-06 48.5 4.6 37 169-210 45-81 (212)
180 3tlx_A Adenylate kinase 2; str 94.7 0.021 7.1E-07 51.1 3.7 24 186-209 28-51 (243)
181 2ged_A SR-beta, signal recogni 94.7 0.028 9.7E-07 47.8 4.5 26 185-210 46-71 (193)
182 2onk_A Molybdate/tungstate ABC 94.6 0.018 6.3E-07 51.4 3.3 22 188-209 25-46 (240)
183 2wsm_A Hydrogenase expression/ 94.6 0.016 5.6E-07 50.6 2.9 25 186-210 29-53 (221)
184 3b9q_A Chloroplast SRP recepto 94.6 0.02 7E-07 53.0 3.7 25 186-210 99-123 (302)
185 3nwj_A ATSK2; P loop, shikimat 94.6 0.016 5.3E-07 52.2 2.8 22 188-209 49-70 (250)
186 3lnc_A Guanylate kinase, GMP k 94.6 0.012 4.1E-07 52.1 2.0 22 188-209 28-50 (231)
187 2z43_A DNA repair and recombin 94.6 0.048 1.6E-06 51.0 6.2 56 187-243 107-166 (324)
188 2px0_A Flagellar biosynthesis 94.6 0.02 6.9E-07 52.9 3.5 25 186-210 104-128 (296)
189 1v5w_A DMC1, meiotic recombina 94.6 0.061 2.1E-06 50.7 6.9 56 186-242 121-180 (343)
190 1ypw_A Transitional endoplasmi 94.6 0.034 1.2E-06 58.8 5.7 51 160-210 204-261 (806)
191 3ake_A Cytidylate kinase; CMP 94.6 0.019 6.6E-07 49.5 3.2 21 189-209 4-24 (208)
192 2i1q_A DNA repair and recombin 94.5 0.051 1.7E-06 50.7 6.2 57 186-243 97-167 (322)
193 3e70_C DPA, signal recognition 94.5 0.024 8.2E-07 53.2 3.9 25 186-210 128-152 (328)
194 1np6_A Molybdopterin-guanine d 94.5 0.022 7.5E-07 48.2 3.3 25 186-210 5-29 (174)
195 3m6a_A ATP-dependent protease 94.5 0.016 5.5E-07 58.4 2.8 51 160-210 81-131 (543)
196 3tif_A Uncharacterized ABC tra 94.4 0.019 6.3E-07 51.2 2.9 22 188-209 32-53 (235)
197 3d3q_A TRNA delta(2)-isopenten 94.4 0.022 7.4E-07 53.5 3.4 23 188-210 8-30 (340)
198 3be4_A Adenylate kinase; malar 94.4 0.018 6.2E-07 50.4 2.8 23 188-210 6-28 (217)
199 1a7j_A Phosphoribulokinase; tr 94.4 0.013 4.6E-07 54.0 1.9 24 186-209 4-27 (290)
200 3hr8_A Protein RECA; alpha and 94.4 0.047 1.6E-06 51.7 5.7 44 187-232 61-104 (356)
201 1vma_A Cell division protein F 94.4 0.027 9.3E-07 52.3 3.9 25 186-210 103-127 (306)
202 1iy2_A ATP-dependent metallopr 94.4 0.02 6.8E-07 52.3 3.0 52 159-210 39-96 (278)
203 2pcj_A ABC transporter, lipopr 94.4 0.019 6.5E-07 50.7 2.8 22 188-209 31-52 (224)
204 1um8_A ATP-dependent CLP prote 94.4 0.028 9.7E-07 53.7 4.2 24 187-210 72-95 (376)
205 3r20_A Cytidylate kinase; stru 94.4 0.023 7.8E-07 50.5 3.2 24 187-210 9-32 (233)
206 3bh0_A DNAB-like replicative h 94.3 0.061 2.1E-06 50.1 6.3 51 187-241 68-118 (315)
207 3b85_A Phosphate starvation-in 94.3 0.019 6.4E-07 50.1 2.5 23 188-210 23-45 (208)
208 2xxa_A Signal recognition part 94.3 0.051 1.7E-06 53.0 5.8 41 169-209 79-122 (433)
209 3dm5_A SRP54, signal recogniti 94.3 0.052 1.8E-06 52.9 5.8 24 186-209 99-122 (443)
210 1e4v_A Adenylate kinase; trans 94.3 0.024 8.1E-07 49.5 3.1 21 189-209 2-22 (214)
211 2xb4_A Adenylate kinase; ATP-b 94.3 0.025 8.4E-07 49.9 3.2 22 189-210 2-23 (223)
212 1pzn_A RAD51, DNA repair and r 94.2 0.056 1.9E-06 51.1 5.9 47 186-232 130-180 (349)
213 2cbz_A Multidrug resistance-as 94.2 0.022 7.5E-07 50.8 2.8 22 188-209 32-53 (237)
214 2og2_A Putative signal recogni 94.2 0.028 9.6E-07 53.3 3.7 25 186-210 156-180 (359)
215 1g41_A Heat shock protein HSLU 94.2 0.041 1.4E-06 53.6 4.9 51 160-210 15-73 (444)
216 3lda_A DNA repair protein RAD5 94.1 0.075 2.6E-06 51.2 6.6 56 187-243 178-237 (400)
217 3gfo_A Cobalt import ATP-bindi 94.1 0.023 7.9E-07 51.9 2.9 22 188-209 35-56 (275)
218 2ce7_A Cell division protein F 94.1 0.035 1.2E-06 54.8 4.3 52 159-210 15-72 (476)
219 4eaq_A DTMP kinase, thymidylat 94.1 0.051 1.7E-06 48.1 5.0 25 186-210 25-49 (229)
220 1b0u_A Histidine permease; ABC 94.1 0.023 7.9E-07 51.5 2.9 22 188-209 33-54 (262)
221 1oix_A RAS-related protein RAB 94.1 0.027 9.1E-07 48.1 3.1 24 187-210 29-52 (191)
222 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.026 9E-07 49.5 3.2 38 188-227 24-61 (235)
223 2vp4_A Deoxynucleoside kinase; 94.1 0.028 9.6E-07 49.7 3.3 26 185-210 18-43 (230)
224 2zr9_A Protein RECA, recombina 94.1 0.039 1.3E-06 52.2 4.4 43 187-231 61-103 (349)
225 2d2e_A SUFC protein; ABC-ATPas 94.1 0.027 9.4E-07 50.6 3.2 22 188-209 30-51 (250)
226 3kl4_A SRP54, signal recogniti 94.1 0.055 1.9E-06 52.6 5.5 24 186-209 96-119 (433)
227 1ak2_A Adenylate kinase isoenz 94.0 0.032 1.1E-06 49.4 3.6 24 187-210 16-39 (233)
228 1ji0_A ABC transporter; ATP bi 94.0 0.025 8.6E-07 50.5 2.9 22 188-209 33-54 (240)
229 1mv5_A LMRA, multidrug resista 94.0 0.027 9.3E-07 50.4 3.0 22 188-209 29-50 (243)
230 1u94_A RECA protein, recombina 94.0 0.043 1.5E-06 52.1 4.5 44 187-232 63-106 (356)
231 1q3t_A Cytidylate kinase; nucl 94.0 0.033 1.1E-06 49.5 3.6 25 185-209 14-38 (236)
232 3p32_A Probable GTPase RV1496/ 94.0 0.051 1.7E-06 51.6 5.1 37 169-209 65-101 (355)
233 2pze_A Cystic fibrosis transme 94.0 0.026 8.8E-07 50.0 2.8 22 188-209 35-56 (229)
234 4g1u_C Hemin import ATP-bindin 94.0 0.026 8.8E-07 51.3 2.9 22 188-209 38-59 (266)
235 1g6h_A High-affinity branched- 94.0 0.026 8.8E-07 51.0 2.9 22 188-209 34-55 (257)
236 3crm_A TRNA delta(2)-isopenten 94.0 0.031 1E-06 52.1 3.4 23 188-210 6-28 (323)
237 1ltq_A Polynucleotide kinase; 94.0 0.03 1E-06 51.6 3.4 22 188-209 3-24 (301)
238 2dyk_A GTP-binding protein; GT 94.0 0.036 1.2E-06 45.3 3.5 23 188-210 2-24 (161)
239 2v3c_C SRP54, signal recogniti 94.0 0.044 1.5E-06 53.4 4.6 25 186-210 98-122 (432)
240 1sgw_A Putative ABC transporte 94.0 0.023 8E-07 49.8 2.4 22 188-209 36-57 (214)
241 3a8t_A Adenylate isopentenyltr 93.9 0.036 1.2E-06 51.9 3.8 24 187-210 40-63 (339)
242 3foz_A TRNA delta(2)-isopenten 93.9 0.039 1.3E-06 51.0 3.9 25 186-210 9-33 (316)
243 2olj_A Amino acid ABC transpor 93.9 0.027 9.1E-07 51.1 2.9 22 188-209 51-72 (263)
244 2zu0_C Probable ATP-dependent 93.9 0.03 1E-06 50.9 3.2 22 188-209 47-68 (267)
245 1yrb_A ATP(GTP)binding protein 93.9 0.05 1.7E-06 48.8 4.7 25 185-209 12-36 (262)
246 2ff7_A Alpha-hemolysin translo 93.9 0.027 9.4E-07 50.5 2.9 22 188-209 36-57 (247)
247 3end_A Light-independent proto 93.9 0.034 1.2E-06 51.5 3.6 26 184-209 38-63 (307)
248 2wji_A Ferrous iron transport 93.9 0.035 1.2E-06 46.0 3.3 23 188-210 4-26 (165)
249 2zej_A Dardarin, leucine-rich 93.9 0.026 9E-07 47.7 2.6 22 189-210 4-25 (184)
250 3exa_A TRNA delta(2)-isopenten 93.9 0.033 1.1E-06 51.5 3.4 23 188-210 4-26 (322)
251 2qgz_A Helicase loader, putati 93.9 0.03 1E-06 52.0 3.2 40 168-210 136-175 (308)
252 1zu4_A FTSY; GTPase, signal re 93.9 0.04 1.4E-06 51.5 4.0 25 186-210 104-128 (320)
253 3k1j_A LON protease, ATP-depen 93.9 0.038 1.3E-06 56.5 4.1 43 160-210 41-83 (604)
254 3zvl_A Bifunctional polynucleo 93.9 0.034 1.2E-06 54.0 3.6 26 185-210 256-281 (416)
255 2f9l_A RAB11B, member RAS onco 93.8 0.031 1.1E-06 48.0 3.0 24 187-210 5-28 (199)
256 1vpl_A ABC transporter, ATP-bi 93.8 0.029 1E-06 50.6 2.9 22 188-209 42-63 (256)
257 2v9p_A Replication protein E1; 93.8 0.032 1.1E-06 51.7 3.1 23 187-209 126-148 (305)
258 2ixe_A Antigen peptide transpo 93.8 0.029 1E-06 51.1 2.9 22 188-209 46-67 (271)
259 2dr3_A UPF0273 protein PH0284; 93.8 0.043 1.5E-06 48.7 4.0 38 188-227 24-61 (247)
260 2eyu_A Twitching motility prot 93.8 0.035 1.2E-06 50.2 3.4 23 187-209 25-47 (261)
261 2ghi_A Transport protein; mult 93.8 0.03 1E-06 50.7 2.9 22 188-209 47-68 (260)
262 1nlf_A Regulatory protein REPA 93.8 0.031 1E-06 51.1 3.0 22 188-209 31-52 (279)
263 2yhs_A FTSY, cell division pro 93.7 0.039 1.3E-06 54.4 3.7 25 186-210 292-316 (503)
264 2qi9_C Vitamin B12 import ATP- 93.7 0.032 1.1E-06 50.1 2.9 22 188-209 27-48 (249)
265 2yz2_A Putative ABC transporte 93.7 0.032 1.1E-06 50.7 2.9 22 188-209 34-55 (266)
266 1cr0_A DNA primase/helicase; R 93.7 0.034 1.2E-06 51.2 3.1 51 188-241 36-86 (296)
267 2nq2_C Hypothetical ABC transp 93.6 0.033 1.1E-06 50.2 2.9 22 188-209 32-53 (253)
268 3pxi_A Negative regulator of g 93.6 0.066 2.3E-06 56.3 5.6 51 160-210 491-544 (758)
269 2ihy_A ABC transporter, ATP-bi 93.6 0.033 1.1E-06 51.0 2.9 22 188-209 48-69 (279)
270 2ce2_X GTPase HRAS; signaling 93.6 0.038 1.3E-06 45.2 3.0 22 189-210 5-26 (166)
271 4edh_A DTMP kinase, thymidylat 93.6 0.12 4E-06 45.2 6.2 23 188-210 7-29 (213)
272 2lkc_A Translation initiation 93.5 0.067 2.3E-06 44.5 4.5 25 186-210 7-31 (178)
273 3sop_A Neuronal-specific septi 93.5 0.038 1.3E-06 50.3 3.1 21 189-209 4-24 (270)
274 2dhr_A FTSH; AAA+ protein, hex 93.5 0.077 2.6E-06 52.7 5.5 52 159-210 30-87 (499)
275 1z2a_A RAS-related protein RAB 93.5 0.05 1.7E-06 44.7 3.6 24 187-210 5-28 (168)
276 2wjg_A FEOB, ferrous iron tran 93.5 0.047 1.6E-06 46.0 3.5 24 187-210 7-30 (188)
277 2nzj_A GTP-binding protein REM 93.4 0.053 1.8E-06 45.0 3.6 24 187-210 4-27 (175)
278 2j37_W Signal recognition part 93.4 0.089 3E-06 52.2 5.8 25 185-209 99-123 (504)
279 1svm_A Large T antigen; AAA+ f 93.4 0.045 1.6E-06 52.3 3.5 24 186-209 168-191 (377)
280 1ls1_A Signal recognition part 93.3 0.048 1.6E-06 50.3 3.5 24 187-210 98-121 (295)
281 3con_A GTPase NRAS; structural 93.3 0.045 1.5E-06 46.3 3.1 23 188-210 22-44 (190)
282 3nh6_A ATP-binding cassette SU 93.3 0.033 1.1E-06 51.6 2.3 22 188-209 81-102 (306)
283 1svi_A GTP-binding protein YSX 93.2 0.06 2E-06 45.7 3.8 25 186-210 22-46 (195)
284 1nrj_B SR-beta, signal recogni 93.2 0.056 1.9E-06 47.0 3.6 26 185-210 10-35 (218)
285 1u8z_A RAS-related protein RAL 93.2 0.049 1.7E-06 44.7 3.1 23 188-210 5-27 (168)
286 1z08_A RAS-related protein RAB 93.2 0.065 2.2E-06 44.2 3.8 24 187-210 6-29 (170)
287 2pjz_A Hypothetical protein ST 93.1 0.044 1.5E-06 49.7 2.9 22 188-209 31-52 (263)
288 2ocp_A DGK, deoxyguanosine kin 93.1 0.056 1.9E-06 48.0 3.5 23 188-210 3-25 (241)
289 3io5_A Recombination and repai 93.1 0.1 3.5E-06 48.4 5.2 44 189-232 30-73 (333)
290 1c1y_A RAS-related protein RAP 93.1 0.052 1.8E-06 44.6 3.0 22 189-210 5-26 (167)
291 1ek0_A Protein (GTP-binding pr 93.0 0.054 1.8E-06 44.6 3.1 23 189-211 5-27 (170)
292 1z0j_A RAB-22, RAS-related pro 93.0 0.054 1.9E-06 44.6 3.1 23 188-210 7-29 (170)
293 2qmh_A HPR kinase/phosphorylas 93.0 0.057 1.9E-06 46.5 3.2 23 188-210 35-57 (205)
294 1kao_A RAP2A; GTP-binding prot 93.0 0.054 1.9E-06 44.3 3.0 23 188-210 4-26 (167)
295 2erx_A GTP-binding protein DI- 93.0 0.053 1.8E-06 44.7 3.0 23 188-210 4-26 (172)
296 2gj8_A MNME, tRNA modification 93.0 0.052 1.8E-06 45.4 2.9 23 188-210 5-27 (172)
297 1m7b_A RND3/RHOE small GTP-bin 93.0 0.052 1.8E-06 45.8 3.0 25 186-210 6-30 (184)
298 3pqc_A Probable GTP-binding pr 93.0 0.07 2.4E-06 45.1 3.8 25 186-210 22-46 (195)
299 3ld9_A DTMP kinase, thymidylat 92.9 0.14 4.9E-06 45.0 5.8 25 186-210 20-44 (223)
300 1xp8_A RECA protein, recombina 92.9 0.076 2.6E-06 50.5 4.2 44 187-232 74-117 (366)
301 3ihw_A Centg3; RAS, centaurin, 92.9 0.057 1.9E-06 45.7 3.1 24 187-210 20-43 (184)
302 3lv8_A DTMP kinase, thymidylat 92.9 0.14 4.7E-06 45.5 5.6 52 187-239 27-78 (236)
303 2aka_B Dynamin-1; fusion prote 92.8 0.14 4.7E-06 46.9 5.9 42 169-210 8-49 (299)
304 1ky3_A GTP-binding protein YPT 92.8 0.07 2.4E-06 44.5 3.6 25 186-210 7-31 (182)
305 1nij_A Hypothetical protein YJ 92.8 0.053 1.8E-06 50.6 3.0 25 186-210 3-27 (318)
306 3q85_A GTP-binding protein REM 92.8 0.069 2.3E-06 44.0 3.4 22 188-209 3-24 (169)
307 2bbs_A Cystic fibrosis transme 92.8 0.05 1.7E-06 50.0 2.7 22 188-209 65-86 (290)
308 1u0j_A DNA replication protein 92.8 0.12 4.3E-06 46.6 5.3 38 169-210 90-127 (267)
309 2fn4_A P23, RAS-related protei 92.8 0.083 2.8E-06 44.0 4.0 25 186-210 8-32 (181)
310 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.061 2.1E-06 44.7 3.0 25 186-210 6-30 (177)
311 3fvq_A Fe(3+) IONS import ATP- 92.7 0.057 1.9E-06 51.2 3.1 22 188-209 31-52 (359)
312 3v9p_A DTMP kinase, thymidylat 92.7 0.1 3.6E-06 46.0 4.6 24 187-210 25-48 (227)
313 1r8s_A ADP-ribosylation factor 92.7 0.061 2.1E-06 44.1 3.0 22 189-210 2-23 (164)
314 3eph_A TRNA isopentenyltransfe 92.7 0.067 2.3E-06 51.3 3.5 22 188-209 3-24 (409)
315 3c5c_A RAS-like protein 12; GD 92.7 0.062 2.1E-06 45.6 3.0 25 186-210 20-44 (187)
316 1g16_A RAS-related protein SEC 92.7 0.061 2.1E-06 44.3 3.0 23 188-210 4-26 (170)
317 3tui_C Methionine import ATP-b 92.7 0.06 2.1E-06 51.1 3.2 22 188-209 55-76 (366)
318 1r2q_A RAS-related protein RAB 92.7 0.064 2.2E-06 44.1 3.1 23 188-210 7-29 (170)
319 3q72_A GTP-binding protein RAD 92.6 0.058 2E-06 44.3 2.7 21 189-209 4-24 (166)
320 2iwr_A Centaurin gamma 1; ANK 92.6 0.055 1.9E-06 45.2 2.6 24 187-210 7-30 (178)
321 2www_A Methylmalonic aciduria 92.6 0.075 2.6E-06 50.3 3.7 24 186-209 73-96 (349)
322 1fzq_A ADP-ribosylation factor 92.6 0.07 2.4E-06 44.9 3.2 25 186-210 15-39 (181)
323 1z0f_A RAB14, member RAS oncog 92.6 0.068 2.3E-06 44.4 3.1 26 186-211 14-39 (179)
324 2cxx_A Probable GTP-binding pr 92.6 0.062 2.1E-06 45.3 2.9 22 189-210 3-24 (190)
325 1lw7_A Transcriptional regulat 92.6 0.065 2.2E-06 51.0 3.3 23 187-209 170-192 (365)
326 4dsu_A GTPase KRAS, isoform 2B 92.5 0.067 2.3E-06 44.9 3.1 24 188-211 5-28 (189)
327 1cp2_A CP2, nitrogenase iron p 92.5 0.068 2.3E-06 48.3 3.3 22 188-209 2-23 (269)
328 1m2o_B GTP-binding protein SAR 92.5 0.065 2.2E-06 45.6 3.0 23 188-210 24-46 (190)
329 2hxs_A RAB-26, RAS-related pro 92.5 0.1 3.6E-06 43.3 4.2 25 186-210 5-29 (178)
330 3tw8_B RAS-related protein RAB 92.5 0.056 1.9E-06 45.1 2.5 25 186-210 8-32 (181)
331 1z47_A CYSA, putative ABC-tran 92.5 0.066 2.3E-06 50.7 3.2 22 188-209 42-63 (355)
332 3t1o_A Gliding protein MGLA; G 92.5 0.067 2.3E-06 45.3 3.0 23 187-209 14-36 (198)
333 3kkq_A RAS-related protein M-R 92.5 0.12 3.9E-06 43.3 4.4 25 186-210 17-41 (183)
334 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.07 2.4E-06 44.7 3.1 23 188-210 6-28 (186)
335 2yv5_A YJEQ protein; hydrolase 92.4 0.11 3.7E-06 48.1 4.5 32 168-208 155-186 (302)
336 2bme_A RAB4A, RAS-related prot 92.4 0.069 2.3E-06 44.9 3.0 25 186-210 9-33 (186)
337 2h92_A Cytidylate kinase; ross 92.4 0.063 2.1E-06 46.8 2.8 22 188-209 4-25 (219)
338 1p5z_B DCK, deoxycytidine kina 92.4 0.047 1.6E-06 49.3 2.0 25 186-210 23-47 (263)
339 3t5g_A GTP-binding protein RHE 92.4 0.082 2.8E-06 44.2 3.4 25 186-210 5-29 (181)
340 2y8e_A RAB-protein 6, GH09086P 92.4 0.072 2.5E-06 44.2 3.0 23 188-210 15-37 (179)
341 3hjn_A DTMP kinase, thymidylat 92.3 0.18 6.2E-06 43.3 5.6 22 189-210 2-23 (197)
342 2a9k_A RAS-related protein RAL 92.3 0.075 2.6E-06 44.5 3.1 25 187-211 18-42 (187)
343 4tmk_A Protein (thymidylate ki 92.3 0.18 6E-06 44.0 5.5 52 188-240 4-55 (213)
344 2qm8_A GTPase/ATPase; G protei 92.3 0.086 2.9E-06 49.6 3.7 24 186-209 54-77 (337)
345 3rlf_A Maltose/maltodextrin im 92.3 0.071 2.4E-06 50.9 3.2 22 188-209 30-51 (381)
346 2yyz_A Sugar ABC transporter, 92.3 0.071 2.4E-06 50.5 3.2 22 188-209 30-51 (359)
347 1upt_A ARL1, ADP-ribosylation 92.3 0.099 3.4E-06 43.1 3.8 24 187-210 7-30 (171)
348 3kta_A Chromosome segregation 92.3 0.076 2.6E-06 44.8 3.1 21 189-209 28-48 (182)
349 2efe_B Small GTP-binding prote 92.3 0.075 2.6E-06 44.3 3.0 24 187-210 12-35 (181)
350 3bc1_A RAS-related protein RAB 92.3 0.075 2.6E-06 44.8 3.1 25 186-210 10-34 (195)
351 2oil_A CATX-8, RAS-related pro 92.3 0.075 2.6E-06 45.1 3.1 25 186-210 24-48 (193)
352 3bwd_D RAC-like GTP-binding pr 92.3 0.076 2.6E-06 44.4 3.1 24 187-210 8-31 (182)
353 1j8m_F SRP54, signal recogniti 92.3 0.064 2.2E-06 49.5 2.7 24 187-210 98-121 (297)
354 4bas_A ADP-ribosylation factor 92.2 0.075 2.6E-06 45.2 3.0 27 185-211 15-41 (199)
355 2it1_A 362AA long hypothetical 92.2 0.074 2.5E-06 50.5 3.2 22 188-209 30-51 (362)
356 2afh_E Nitrogenase iron protei 92.2 0.084 2.9E-06 48.3 3.5 22 188-209 3-24 (289)
357 1f6b_A SAR1; gtpases, N-termin 92.2 0.078 2.7E-06 45.4 3.1 24 187-210 25-48 (198)
358 3ch4_B Pmkase, phosphomevalona 92.2 0.11 3.6E-06 44.9 3.8 25 185-209 9-33 (202)
359 3d31_A Sulfate/molybdate ABC t 92.2 0.065 2.2E-06 50.6 2.7 22 188-209 27-48 (348)
360 2bov_A RAla, RAS-related prote 92.2 0.1 3.5E-06 44.5 3.9 25 186-210 13-37 (206)
361 2atv_A RERG, RAS-like estrogen 92.2 0.078 2.7E-06 45.2 3.0 24 187-210 28-51 (196)
362 3gmt_A Adenylate kinase; ssgci 92.2 0.076 2.6E-06 46.9 3.0 24 187-210 8-31 (230)
363 1g29_1 MALK, maltose transport 92.1 0.077 2.6E-06 50.6 3.2 22 188-209 30-51 (372)
364 1r6b_X CLPA protein; AAA+, N-t 92.1 0.09 3.1E-06 55.2 4.0 51 160-210 458-511 (758)
365 1vg8_A RAS-related protein RAB 92.1 0.081 2.8E-06 45.3 3.1 26 186-211 7-32 (207)
366 2g6b_A RAS-related protein RAB 92.1 0.084 2.9E-06 44.0 3.1 26 186-211 9-34 (180)
367 1qvr_A CLPB protein; coiled co 92.1 0.087 3E-06 56.2 3.9 51 160-210 558-611 (854)
368 1v43_A Sugar-binding transport 92.1 0.079 2.7E-06 50.5 3.2 22 188-209 38-59 (372)
369 2fg5_A RAB-22B, RAS-related pr 92.1 0.081 2.8E-06 44.9 3.0 25 187-211 23-47 (192)
370 3tkl_A RAS-related protein RAB 92.1 0.11 3.6E-06 44.1 3.8 26 186-211 15-40 (196)
371 2qnr_A Septin-2, protein NEDD5 92.0 0.067 2.3E-06 49.5 2.6 21 189-209 20-40 (301)
372 2cjw_A GTP-binding protein GEM 92.0 0.081 2.8E-06 45.1 3.0 23 187-209 6-28 (192)
373 1gwn_A RHO-related GTP-binding 92.0 0.08 2.7E-06 45.7 3.0 25 186-210 27-51 (205)
374 1oxx_K GLCV, glucose, ABC tran 92.0 0.061 2.1E-06 50.9 2.3 22 188-209 32-53 (353)
375 2axn_A 6-phosphofructo-2-kinas 92.0 0.094 3.2E-06 52.5 3.8 24 186-209 34-57 (520)
376 2qu8_A Putative nucleolar GTP- 92.0 0.1 3.5E-06 45.8 3.6 25 186-210 28-52 (228)
377 1pui_A ENGB, probable GTP-bind 92.0 0.048 1.6E-06 47.0 1.5 25 186-210 25-49 (210)
378 2fh5_B SR-beta, signal recogni 92.0 0.09 3.1E-06 45.4 3.3 26 186-211 6-31 (214)
379 3cbq_A GTP-binding protein REM 92.0 0.078 2.7E-06 45.3 2.8 24 186-209 22-45 (195)
380 1zbd_A Rabphilin-3A; G protein 91.9 0.086 3E-06 45.1 3.1 24 187-210 8-31 (203)
381 2ew1_A RAS-related protein RAB 91.9 0.096 3.3E-06 45.1 3.4 25 186-210 25-49 (201)
382 2r8r_A Sensor protein; KDPD, P 91.9 0.087 3E-06 46.3 3.0 23 188-210 7-29 (228)
383 2ewv_A Twitching motility prot 91.9 0.091 3.1E-06 50.2 3.4 23 187-209 136-158 (372)
384 3oes_A GTPase rhebl1; small GT 91.9 0.086 2.9E-06 45.2 3.0 26 186-211 23-48 (201)
385 3reg_A RHO-like small GTPase; 91.8 0.09 3.1E-06 44.6 3.1 25 187-211 23-47 (194)
386 1zd9_A ADP-ribosylation factor 91.8 0.091 3.1E-06 44.4 3.1 24 187-210 22-45 (188)
387 3llu_A RAS-related GTP-binding 91.8 0.084 2.9E-06 45.1 2.8 24 186-209 19-42 (196)
388 2p67_A LAO/AO transport system 91.8 0.1 3.4E-06 49.2 3.6 24 186-209 55-78 (341)
389 2gf9_A RAS-related protein RAB 91.8 0.091 3.1E-06 44.4 3.1 25 187-211 22-46 (189)
390 3iev_A GTP-binding protein ERA 91.8 0.096 3.3E-06 48.6 3.4 27 184-210 7-33 (308)
391 2a5j_A RAS-related protein RAB 91.8 0.094 3.2E-06 44.4 3.1 24 187-210 21-44 (191)
392 2orw_A Thymidine kinase; TMTK, 91.8 0.091 3.1E-06 44.7 2.9 23 188-210 4-26 (184)
393 3dz8_A RAS-related protein RAB 91.7 0.089 3E-06 44.6 2.9 24 187-210 23-46 (191)
394 2q3h_A RAS homolog gene family 91.7 0.09 3.1E-06 44.9 2.9 25 186-210 19-43 (201)
395 2obl_A ESCN; ATPase, hydrolase 91.7 0.09 3.1E-06 49.6 3.1 23 188-210 72-94 (347)
396 3clv_A RAB5 protein, putative; 91.7 0.14 4.7E-06 43.4 4.1 26 186-211 6-31 (208)
397 1z06_A RAS-related protein RAB 91.7 0.098 3.3E-06 44.2 3.0 25 186-210 19-43 (189)
398 2gza_A Type IV secretion syste 91.7 0.079 2.7E-06 50.4 2.7 22 188-209 176-197 (361)
399 2ffh_A Protein (FFH); SRP54, s 91.6 0.11 3.6E-06 50.5 3.6 25 186-210 97-121 (425)
400 1ega_A Protein (GTP-binding pr 91.6 0.1 3.6E-06 48.2 3.4 25 186-210 7-31 (301)
401 1x3s_A RAS-related protein RAB 91.6 0.098 3.4E-06 44.2 3.1 23 188-210 16-38 (195)
402 3lxx_A GTPase IMAP family memb 91.6 0.11 3.9E-06 45.9 3.5 26 186-211 28-53 (239)
403 1u0l_A Probable GTPase ENGC; p 91.6 0.15 5.2E-06 47.0 4.5 34 168-210 159-192 (301)
404 2o52_A RAS-related protein RAB 91.6 0.092 3.2E-06 45.0 2.8 25 186-210 24-48 (200)
405 3gd7_A Fusion complex of cysti 91.5 0.096 3.3E-06 50.2 3.1 22 188-209 48-69 (390)
406 2gf0_A GTP-binding protein DI- 91.5 0.14 4.7E-06 43.5 3.8 25 186-210 7-31 (199)
407 3jvv_A Twitching mobility prot 91.5 0.11 3.7E-06 49.3 3.4 22 188-209 124-145 (356)
408 3cr8_A Sulfate adenylyltranfer 91.5 0.086 2.9E-06 53.0 2.8 24 187-210 369-392 (552)
409 1ksh_A ARF-like protein 2; sma 91.4 0.12 4.2E-06 43.4 3.4 26 186-211 17-42 (186)
410 2bcg_Y Protein YP2, GTP-bindin 91.4 0.1 3.5E-06 44.8 3.0 26 186-211 7-32 (206)
411 4hlc_A DTMP kinase, thymidylat 91.4 0.34 1.2E-05 41.9 6.3 23 188-210 3-25 (205)
412 2h17_A ADP-ribosylation factor 91.4 0.097 3.3E-06 43.9 2.7 24 187-210 21-44 (181)
413 2p5s_A RAS and EF-hand domain 91.4 0.13 4.4E-06 43.9 3.5 25 186-210 27-51 (199)
414 2j1l_A RHO-related GTP-binding 91.4 0.098 3.3E-06 45.4 2.8 24 187-210 34-57 (214)
415 3k53_A Ferrous iron transport 91.4 0.12 4.2E-06 46.8 3.5 24 187-210 3-26 (271)
416 2atx_A Small GTP binding prote 91.3 0.11 3.6E-06 44.1 3.0 24 187-210 18-41 (194)
417 3fdi_A Uncharacterized protein 91.3 0.12 4E-06 44.7 3.2 23 188-210 7-29 (201)
418 2fv8_A H6, RHO-related GTP-bin 91.3 0.11 3.7E-06 44.8 3.0 23 188-210 26-48 (207)
419 4dhe_A Probable GTP-binding pr 91.3 0.095 3.2E-06 45.6 2.6 26 186-211 28-53 (223)
420 4gzl_A RAS-related C3 botulinu 91.3 0.13 4.4E-06 44.2 3.5 25 186-210 29-53 (204)
421 1zj6_A ADP-ribosylation factor 91.3 0.15 5.1E-06 42.9 3.8 25 186-210 15-39 (187)
422 2il1_A RAB12; G-protein, GDP, 91.3 0.089 3.1E-06 44.7 2.4 24 187-210 26-49 (192)
423 2npi_A Protein CLP1; CLP1-PCF1 91.2 0.091 3.1E-06 51.6 2.7 23 188-210 139-161 (460)
424 1jwy_B Dynamin A GTPase domain 91.2 0.22 7.5E-06 46.0 5.2 41 169-210 7-47 (315)
425 3upu_A ATP-dependent DNA helic 91.2 0.17 6E-06 49.6 4.7 22 189-210 47-68 (459)
426 2hup_A RAS-related protein RAB 91.2 0.11 3.8E-06 44.5 3.0 25 186-210 28-52 (201)
427 4dkx_A RAS-related protein RAB 91.2 0.12 3.9E-06 45.3 3.1 22 189-210 15-36 (216)
428 1bif_A 6-phosphofructo-2-kinas 91.2 0.12 4.2E-06 50.9 3.6 25 186-210 38-62 (469)
429 1moz_A ARL1, ADP-ribosylation 91.1 0.091 3.1E-06 43.9 2.3 25 186-210 17-41 (183)
430 2qag_B Septin-6, protein NEDD5 91.1 0.098 3.4E-06 50.7 2.8 21 190-210 45-65 (427)
431 3cph_A RAS-related protein SEC 91.1 0.12 4E-06 44.5 3.0 25 186-210 19-43 (213)
432 2j0v_A RAC-like GTP-binding pr 91.1 0.11 3.9E-06 44.7 3.0 25 186-210 8-32 (212)
433 1p9r_A General secretion pathw 91.1 0.21 7.1E-06 48.4 5.0 23 187-209 167-189 (418)
434 2gco_A H9, RHO-related GTP-bin 91.1 0.12 4E-06 44.3 3.0 23 188-210 26-48 (201)
435 2g3y_A GTP-binding protein GEM 91.1 0.14 4.9E-06 44.5 3.6 24 186-209 36-59 (211)
436 3q3j_B RHO-related GTP-binding 91.0 0.12 4.2E-06 44.8 3.1 24 187-210 27-50 (214)
437 1mky_A Probable GTP-binding pr 91.0 0.21 7.1E-06 48.8 5.0 47 164-210 152-203 (439)
438 2b6h_A ADP-ribosylation factor 91.0 0.13 4.6E-06 43.6 3.3 24 187-210 29-52 (192)
439 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.087 3E-06 49.4 2.2 22 188-209 172-193 (330)
440 2rcn_A Probable GTPase ENGC; Y 91.0 0.12 4.2E-06 48.9 3.2 23 188-210 216-238 (358)
441 2fu5_C RAS-related protein RAB 91.0 0.072 2.4E-06 44.7 1.5 25 186-210 7-31 (183)
442 2zts_A Putative uncharacterize 90.9 0.13 4.3E-06 45.6 3.1 48 187-237 30-77 (251)
443 1zcb_A G alpha I/13; GTP-bindi 90.9 0.14 4.9E-06 48.5 3.6 23 185-207 31-53 (362)
444 3b1v_A Ferrous iron uptake tra 90.8 0.19 6.5E-06 45.6 4.2 24 187-210 3-26 (272)
445 3f9v_A Minichromosome maintena 90.8 0.06 2.1E-06 54.8 1.0 51 160-210 295-350 (595)
446 1ypw_A Transitional endoplasmi 90.8 0.15 5E-06 54.0 3.9 52 159-210 476-534 (806)
447 1tq4_A IIGP1, interferon-induc 90.8 0.14 4.9E-06 49.4 3.5 24 186-209 68-91 (413)
448 1m8p_A Sulfate adenylyltransfe 90.8 0.27 9.1E-06 49.7 5.7 25 186-210 395-419 (573)
449 4dzz_A Plasmid partitioning pr 90.7 0.23 8E-06 42.4 4.6 37 188-226 2-39 (206)
450 2f7s_A C25KG, RAS-related prot 90.7 0.13 4.5E-06 44.5 3.0 24 187-210 25-48 (217)
451 2h57_A ADP-ribosylation factor 90.7 0.091 3.1E-06 44.4 1.9 25 187-211 21-45 (190)
452 3kjh_A CO dehydrogenase/acetyl 90.7 0.25 8.5E-06 43.7 4.9 21 190-210 3-23 (254)
453 2xtp_A GTPase IMAP family memb 90.7 0.16 5.4E-06 45.6 3.6 25 186-210 21-45 (260)
454 4a1f_A DNAB helicase, replicat 90.5 0.37 1.2E-05 45.2 6.0 52 188-243 47-98 (338)
455 2dpy_A FLII, flagellum-specifi 90.4 0.14 4.7E-06 50.0 3.1 24 187-210 157-180 (438)
456 3euj_A Chromosome partition pr 90.4 0.15 5.1E-06 50.3 3.3 22 188-209 30-51 (483)
457 3io3_A DEHA2D07832P; chaperone 90.4 0.34 1.2E-05 45.7 5.7 24 186-209 17-40 (348)
458 2qag_C Septin-7; cell cycle, c 90.3 0.12 4.2E-06 50.0 2.7 21 190-210 34-54 (418)
459 1x6v_B Bifunctional 3'-phospho 90.2 0.2 6.7E-06 51.1 4.1 25 186-210 51-75 (630)
460 3fkq_A NTRC-like two-domain pr 90.1 0.2 6.9E-06 47.7 3.9 26 184-209 140-166 (373)
461 3iby_A Ferrous iron transport 90.1 0.16 5.6E-06 45.6 3.1 23 188-210 2-24 (256)
462 1wf3_A GTP-binding protein; GT 90.1 0.18 6.3E-06 46.5 3.5 25 186-210 6-30 (301)
463 3ozx_A RNAse L inhibitor; ATP 90.1 0.14 4.7E-06 51.4 2.9 22 188-209 295-316 (538)
464 2qtf_A Protein HFLX, GTP-bindi 90.1 0.16 5.5E-06 48.3 3.2 25 186-210 178-202 (364)
465 1yqt_A RNAse L inhibitor; ATP- 90.0 0.15 5.3E-06 51.1 3.2 23 188-210 313-335 (538)
466 3iqw_A Tail-anchored protein t 90.0 0.42 1.4E-05 44.7 5.9 44 186-231 15-58 (334)
467 3cpj_B GTP-binding protein YPT 89.9 0.17 5.8E-06 44.1 3.0 25 186-210 12-36 (223)
468 1g8f_A Sulfate adenylyltransfe 89.9 0.17 5.9E-06 50.2 3.4 25 186-210 394-418 (511)
469 1fx0_B ATP synthase beta chain 89.9 0.47 1.6E-05 46.6 6.3 52 188-240 166-218 (498)
470 2x77_A ADP-ribosylation factor 89.9 0.11 3.7E-06 43.9 1.6 25 186-210 21-45 (189)
471 1h65_A Chloroplast outer envel 89.9 0.33 1.1E-05 43.8 5.1 26 186-211 38-63 (270)
472 1yqt_A RNAse L inhibitor; ATP- 89.9 0.16 5.6E-06 50.9 3.2 22 188-209 48-69 (538)
473 1t9h_A YLOQ, probable GTPase E 89.8 0.094 3.2E-06 48.6 1.3 22 188-209 174-195 (307)
474 3def_A T7I23.11 protein; chlor 89.8 0.32 1.1E-05 43.8 4.8 26 186-211 35-60 (262)
475 3ozx_A RNAse L inhibitor; ATP 89.7 0.16 5.5E-06 50.9 3.0 24 186-209 24-47 (538)
476 2ck3_D ATP synthase subunit be 89.7 0.43 1.5E-05 46.7 5.8 53 188-241 154-207 (482)
477 3tqf_A HPR(Ser) kinase; transf 89.5 0.2 6.8E-06 42.0 2.9 22 188-209 17-38 (181)
478 2q6t_A DNAB replication FORK h 89.4 0.49 1.7E-05 46.2 6.2 53 187-242 200-252 (444)
479 3bk7_A ABC transporter ATP-bin 89.4 0.18 6.3E-06 51.3 3.2 23 188-210 383-405 (607)
480 3tmk_A Thymidylate kinase; pho 89.3 0.21 7.1E-06 43.7 3.1 23 188-210 6-28 (216)
481 1f2t_A RAD50 ABC-ATPase; DNA d 89.3 0.25 8.4E-06 40.4 3.4 22 188-209 24-45 (149)
482 3a1s_A Iron(II) transport prot 89.3 0.21 7.1E-06 45.0 3.2 24 187-210 5-28 (258)
483 3j16_B RLI1P; ribosome recycli 89.3 0.19 6.5E-06 51.2 3.2 22 188-209 379-400 (608)
484 3cwq_A Para family chromosome 89.3 0.46 1.6E-05 41.1 5.3 40 189-231 2-42 (209)
485 1sky_E F1-ATPase, F1-ATP synth 89.3 0.38 1.3E-05 47.1 5.1 49 189-238 153-202 (473)
486 1dek_A Deoxynucleoside monopho 89.2 0.21 7.1E-06 44.5 3.0 22 188-209 2-23 (241)
487 1c9k_A COBU, adenosylcobinamid 89.2 0.19 6.5E-06 42.5 2.6 35 190-230 2-36 (180)
488 3hdt_A Putative kinase; struct 89.2 0.27 9.1E-06 43.2 3.7 24 187-210 14-37 (223)
489 3lxw_A GTPase IMAP family memb 89.2 0.25 8.6E-06 44.0 3.6 25 187-211 21-45 (247)
490 2e87_A Hypothetical protein PH 89.1 0.2 6.7E-06 47.5 3.0 25 186-210 166-190 (357)
491 3j16_B RLI1P; ribosome recycli 89.1 0.2 6.8E-06 51.0 3.2 23 187-209 103-125 (608)
492 2yc2_C IFT27, small RAB-relate 89.0 0.093 3.2E-06 44.9 0.6 23 188-210 21-43 (208)
493 2gk6_A Regulator of nonsense t 88.9 1 3.6E-05 45.9 8.5 67 163-239 179-245 (624)
494 2r6a_A DNAB helicase, replicat 88.9 0.21 7.3E-06 48.9 3.2 50 187-239 203-252 (454)
495 3t5d_A Septin-7; GTP-binding p 88.8 0.18 6E-06 45.8 2.4 23 188-210 9-31 (274)
496 1q57_A DNA primase/helicase; d 88.8 0.54 1.9E-05 46.6 6.1 53 187-242 242-294 (503)
497 3b5x_A Lipid A export ATP-bind 88.8 0.2 6.9E-06 50.8 3.0 22 188-209 370-391 (582)
498 3b60_A Lipid A export ATP-bind 88.8 0.19 6.4E-06 51.1 2.7 22 188-209 370-391 (582)
499 3ea0_A ATPase, para family; al 88.7 0.28 9.7E-06 43.2 3.6 24 186-209 3-27 (245)
500 2b8t_A Thymidine kinase; deoxy 88.7 0.33 1.1E-05 42.6 3.9 24 187-210 12-35 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.3e-41 Score=343.16 Aligned_cols=246 Identities=15% Similarity=0.189 Sum_probs=193.6
Q ss_pred eeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh--ccccccCccceeeEEeCCcC--cHHHHHHHH
Q 042891 163 YGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN--DVRVHNHFDLKSWTCVSEDF--DIIWVTKSI 238 (423)
Q Consensus 163 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i 238 (423)
|||+.++++|.++|.... +..+++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 34689999999999999999999998 67899999999999999985 889999999
Q ss_pred HHHhhcCCC----CCcCCC-----------------C--------------------ceeeEeccCCHHHHhhcCCC-Cc
Q 042891 239 LKSIASDQL----VDDRDL-----------------N--------------------LLQIVITTRNLCVVEKTGTL-PA 276 (423)
Q Consensus 239 l~~l~~~~~----~~~~~~-----------------~--------------------~l~ilvTTR~~~v~~~~~~~-~~ 276 (423)
+.+++.... .+.... . ..+||||||+..++..++.. .+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeE
Confidence 999876421 010000 0 01199999999999887633 57
Q ss_pred ccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHHHHccccc------
Q 042891 277 YPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWEDVHNCKIW------ 350 (423)
Q Consensus 277 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~~~~~~~~------ 350 (423)
|+|++|+.++||+||.+++|+... ++++.+++++|+++|+|+||||+++|+.|+.+ + .+|...+.+..+
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~~~~~ 362 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESRGLVG 362 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHHCSST
T ss_pred EECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcccHHH
Confidence 999999999999999999986532 36888999999999999999999999999876 3 233333333222
Q ss_pred -----CCCccc---chHHHhh-----------hhccCCCCCccCHHHHHHHHHHc--CcccCCCCCCcHHHHHHHHHHHH
Q 042891 351 -----KLSEED---LLKQCIA-----------YCSLLPKDYEFQQEEIILLWMVE--GFLNHESDKKQMENLCRKYFQEL 409 (423)
Q Consensus 351 -----~~~~~~---~lk~cfl-----------y~s~FP~~~~i~~~~Li~~Wiae--g~i~~~~~~~~~e~~~~~~~~eL 409 (423)
.++++. ++|.||+ |||+||+++.|+ +++|+|+ ||+....+..+++++++ ||++|
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L 437 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRL 437 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHT
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHH
Confidence 222222 8999999 999999999999 8999999 99987554667889988 99999
Q ss_pred HhcCcccccCCC
Q 042891 410 YSRSFFQLSSSN 421 (423)
Q Consensus 410 ~~r~l~q~~~~~ 421 (423)
++|||||++..+
T Consensus 438 ~~rsLl~~~~~~ 449 (549)
T 2a5y_B 438 SKRGALLSGKRM 449 (549)
T ss_dssp TTBSSCSEEECS
T ss_pred HHcCCeeEecCC
Confidence 999999987653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=3.9e-32 Score=284.67 Aligned_cols=230 Identities=15% Similarity=0.115 Sum_probs=175.7
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccc-eeeEEeCCcCcHHHHHHHHH
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDL-KSWTCVSEDFDIIWVTKSIL 239 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~il 239 (423)
..+||+.++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997532 4789999999999999999999998788999987 89999999998888877776
Q ss_pred HHhhcCC---CC------------------------------------CcCCCC-------ceeeEeccCCHHHHhhcCC
Q 042891 240 KSIASDQ---LV------------------------------------DDRDLN-------LLQIVITTRNLCVVEKTGT 273 (423)
Q Consensus 240 ~~l~~~~---~~------------------------------------~~~~~~-------~l~ilvTTR~~~v~~~~~~ 273 (423)
..+.... .. +....+ ..+||||||+..++..+..
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g 283 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCC
Confidence 6432210 00 000000 1129999999999865443
Q ss_pred CCcccCC------CCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcC-CChhHHHHHHc
Q 042891 274 LPAYPLK------ELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVK-YDPNDWEDVHN 346 (423)
Q Consensus 274 ~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~-~~~~~W~~~~~ 346 (423)
...+.++ +|+.+|||+||++. ++.. ..++..+| |+|+||||+++|+.|+.+ .+.++|...-.
T Consensus 284 ~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~ 352 (1221)
T 1vt4_I 284 ATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNC 352 (1221)
T ss_dssp HSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSC
T ss_pred CeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCCh
Confidence 3457777 99999999999998 3322 11233343 999999999999999988 36788975411
Q ss_pred -----ccccC---CCcccch-HHHhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHHHHHhcCcccc
Q 042891 347 -----CKIWK---LSEEDLL-KQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQELYSRSFFQL 417 (423)
Q Consensus 347 -----~~~~~---~~~~~~l-k~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~eL~~r~l~q~ 417 (423)
...++ ++. +. |.||+|||+||+++.|+++.|+.+|+++| ++.++.+|++|+++|||+.
T Consensus 353 ~~I~aaLelSYd~Lp~--eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 353 DKLTTIIESSLNVLEP--AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHHHHHHHHHHHSCT--THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSB
T ss_pred hHHHHHHHHHHHhCCH--HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEE
Confidence 11111 222 67 99999999999999999999999999887 1348899999999999998
Q ss_pred cC
Q 042891 418 SS 419 (423)
Q Consensus 418 ~~ 419 (423)
.+
T Consensus 420 d~ 421 (1221)
T 1vt4_I 420 QP 421 (1221)
T ss_dssp CS
T ss_pred eC
Confidence 53
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=8.8e-31 Score=292.28 Aligned_cols=242 Identities=22% Similarity=0.318 Sum_probs=182.9
Q ss_pred ccCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc-ccCc-cceeeEEeCCcCc--HH
Q 042891 157 VNEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV-HNHF-DLKSWTCVSEDFD--II 232 (423)
Q Consensus 157 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~--~~ 232 (423)
...+.|+||+.++++|.++|...+ +.+++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 455679999999999999997543 46899999999999999999999997543 4445 5677999998543 34
Q ss_pred HHHHHHHHHhhcCCCC-------------------------------CcCCC-------CceeeEeccCCHHHHhh-cCC
Q 042891 233 WVTKSILKSIASDQLV-------------------------------DDRDL-------NLLQIVITTRNLCVVEK-TGT 273 (423)
Q Consensus 233 ~~~~~il~~l~~~~~~-------------------------------~~~~~-------~~l~ilvTTR~~~v~~~-~~~ 273 (423)
..+..++..+...... +..+. ...+||||||+..++.. ++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~ 276 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP 276 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCC
Confidence 4456666665443210 00000 01129999999999855 445
Q ss_pred CCcccCCC-CChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHHHHcccccCC
Q 042891 274 LPAYPLKE-LSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWEDVHNCKIWKL 352 (423)
Q Consensus 274 ~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~~~~~~~~~~ 352 (423)
...+++++ |+.+++++||...++... +++.+++++|+++|+|+||||+++|++|+.+. ..|...++......
T Consensus 277 ~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 277 KHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp BCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred ceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 57899996 999999999999885332 33456799999999999999999999999873 46776654321110
Q ss_pred ----Cc--------------------ccchHHHhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHHH
Q 042891 353 ----SE--------------------EDLLKQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQE 408 (423)
Q Consensus 353 ----~~--------------------~~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~e 408 (423)
.. ..++|.||+|||+||+++.|+++.++++|.++ ++.++.+|++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~ 417 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQE 417 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHH
Confidence 00 01789999999999999999999999999554 4668999999
Q ss_pred HHhcCcccccCCC
Q 042891 409 LYSRSFFQLSSSN 421 (423)
Q Consensus 409 L~~r~l~q~~~~~ 421 (423)
|+++|||+....+
T Consensus 418 L~~~sl~~~~~~~ 430 (1249)
T 3sfz_A 418 FVNKSLLFCNRNG 430 (1249)
T ss_dssp HHHTTSCEEEESS
T ss_pred HHhccceEEecCC
Confidence 9999999977654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=245.99 Aligned_cols=237 Identities=24% Similarity=0.312 Sum_probs=172.0
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccc-ccCc-cceeeEEeCCcCcHHHHH
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV-HNHF-DLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~ 235 (423)
..+.||||+.++++|.++|... .++.++|+|+||||+||||||.+++++.++ ..+| +.++|++++.. +...++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~ 196 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLL 196 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcc----cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHH
Confidence 3457999999999999999753 235789999999999999999999997665 7889 58999999875 333333
Q ss_pred HHH---HHHhhcCCC---CCcCC----------------------------C-------CceeeEeccCCHHHHhhcCCC
Q 042891 236 KSI---LKSIASDQL---VDDRD----------------------------L-------NLLQIVITTRNLCVVEKTGTL 274 (423)
Q Consensus 236 ~~i---l~~l~~~~~---~~~~~----------------------------~-------~~l~ilvTTR~~~v~~~~~~~ 274 (423)
..+ +..++.... ..... . ...+||||||+..++..+..
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~- 275 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMG- 275 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCS-
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCC-
Confidence 333 333331000 00000 0 01229999999988766542
Q ss_pred CcccC---CCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHHHHcccccC
Q 042891 275 PAYPL---KELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWEDVHNCKIWK 351 (423)
Q Consensus 275 ~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~~~~~~~~~ 351 (423)
..+++ ++|+.+++++||...++... +...+.+.+|+++|+|+|||+..+|+.|+.+. ..|..+++.....
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNK 348 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHh
Confidence 23333 68999999999999986421 22346789999999999999999999998863 4687665432111
Q ss_pred ----CC--------------------cccchHHHhhhhccCCCCCccCHHHHHHHHHHcCcccCCCCCCcHHHHHHHHHH
Q 042891 352 ----LS--------------------EEDLLKQCIAYCSLLPKDYEFQQEEIILLWMVEGFLNHESDKKQMENLCRKYFQ 407 (423)
Q Consensus 352 ----~~--------------------~~~~lk~cfly~s~FP~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~~~ 407 (423)
+. -..+.|.||+|||+||+|+.|+.+.|+.+|.++ .+.++.+++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~ 416 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQ 416 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHH
Confidence 00 011789999999999999999999999999543 234788999
Q ss_pred HHHhcCcccccC
Q 042891 408 ELYSRSFFQLSS 419 (423)
Q Consensus 408 eL~~r~l~q~~~ 419 (423)
+|+++|||+...
T Consensus 417 ~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 417 EFVNKSLLFCDR 428 (591)
T ss_dssp HHHHTTSSEEEE
T ss_pred HHHhCcCeEEec
Confidence 999999998654
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.47 E-value=3.4e-14 Score=113.21 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHHHHHHHhhhhcc
Q 042891 6 VSSELLLKKLASKAILLFARQKQSQADLMKWKKTLVKINEVLDDADEK--QNTDQSVKMWLGDLQNLAYDRN 75 (423)
Q Consensus 6 ~~v~~l~~kl~s~~~~e~~~~~~v~~~l~~L~~~l~~i~~~l~~a~~~--~~~~~~v~~Wl~~lr~~ayd~e 75 (423)
|+|+.+++||++++.+|+.++.||+++++.|+++|++|++||.+|+.+ +..++.++.|+++||+++||+|
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999999999999999999999999999999987 5689999999999999999999
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.11 E-value=9.8e-10 Score=107.66 Aligned_cols=252 Identities=12% Similarity=0.016 Sum_probs=139.7
Q ss_pred CceeeecchHHHHHHHH-hcCCCCCCCCceEEEE--EccCCccHHHHHHHHHhccccc---cCcc-ceeeEEeCCcCcHH
Q 042891 160 AKVYGRDKEKEETVELL-LSDDLRTDDGLSVIPI--IGMGGIGKTTLAQLVYNDVRVH---NHFD-LKSWTCVSEDFDII 232 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLA~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 232 (423)
..++||+.+++.|.++| .............+.| +|++|+||||||+.+++..... ..|+ ..+|++.....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 4211000012345555 9999999999999999853211 0122 24677754544555
Q ss_pred HHHHHHHHHhhcC-------------------------------CCC---C-----cCC-------C---------Ccee
Q 042891 233 WVTKSILKSIASD-------------------------------QLV---D-----DRD-------L---------NLLQ 257 (423)
Q Consensus 233 ~~~~~il~~l~~~-------------------------------~~~---~-----~~~-------~---------~~l~ 257 (423)
.++..++.+++.. +.+ . ... + ..+.
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 5555444433210 000 0 000 0 1233
Q ss_pred eEeccCCHHHHhhc--------CC-CCcccCCCCChhhHHHHHHHhh---cCCCCCCCCccHHHHHHHHHHHcC------
Q 042891 258 IVITTRNLCVVEKT--------GT-LPAYPLKELSNNDCLSVFTQHS---LGEKDFSTHPSLKEIGEKIVKKCN------ 319 (423)
Q Consensus 258 ilvTTR~~~v~~~~--------~~-~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~l~~~~~~I~~~c~------ 319 (423)
+|+||+...+...+ .. ...+.+++|+.++.+++|...+ +.... --.+....|++.|+
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-----WEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-----CCHHHHHHHHHHHCGGGTSC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHhccCC
Confidence 77788765533211 11 1238999999999999997653 32111 11467788999999
Q ss_pred CchhhhHhhhhhh---h---c--CCChhHHHHHHcccc-c-----CCCc-ccchHHHhhhhccCC--CCCccCHHHHHHH
Q 042891 320 GLPLVAKSLGGLL---R---V--KYDPNDWEDVHNCKI-W-----KLSE-EDLLKQCIAYCSLLP--KDYEFQQEEIILL 382 (423)
Q Consensus 320 GlPlai~~~g~~L---~---~--~~~~~~W~~~~~~~~-~-----~~~~-~~~lk~cfly~s~FP--~~~~i~~~~Li~~ 382 (423)
|.|..+..+.... . . ..+.+.+..+..... . .+.. ..+.+.++..++.+. .+..+....+...
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~ 336 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQR 336 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 9997655544321 1 1 123445554443221 1 1111 115677777777654 2335666666665
Q ss_pred HHHc--CcccCCCCCCcHHHHHHHHHHHHHhcCcccccC
Q 042891 383 WMVE--GFLNHESDKKQMENLCRKYFQELYSRSFFQLSS 419 (423)
Q Consensus 383 Wiae--g~i~~~~~~~~~e~~~~~~~~eL~~r~l~q~~~ 419 (423)
|-.. ..... .. . .......|+++|+..+|+....
T Consensus 337 ~~~~~~~~~~~-~~-~-~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 337 YEDASLTMYNV-KP-R-GYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHSCC-CC-C-CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhhcCC-CC-C-CHHHHHHHHHHHHhCCCEEeec
Confidence 5321 11111 11 1 1344568999999999997754
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.98 E-value=3.9e-09 Score=100.82 Aligned_cols=231 Identities=13% Similarity=0.066 Sum_probs=131.3
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcC------cH
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDF------DI 231 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 231 (423)
....|+||+.+++.|.+++.. + +++.|+|++|+|||||++++++.. + .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~---~----~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER---P----GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS---S----EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc---C----cEEEEeecccccccCCCH
Confidence 345799999999999999853 1 599999999999999999998842 1 4555543221 12
Q ss_pred ---------------------------------------HHHHHHHHHHhh--cCC---CCCcCCC--------------
Q 042891 232 ---------------------------------------IWVTKSILKSIA--SDQ---LVDDRDL-------------- 253 (423)
Q Consensus 232 ---------------------------------------~~~~~~il~~l~--~~~---~~~~~~~-------------- 253 (423)
..++..+..... ... .++...+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 222222211110 010 0111111
Q ss_pred --------CceeeEeccCCHHHHhhc-----------CC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHH
Q 042891 254 --------NLLQIVITTRNLCVVEKT-----------GT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEK 313 (423)
Q Consensus 254 --------~~l~ilvTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~ 313 (423)
..+.+|+|++.......+ +. ...+.+.+|+.+++.+++....-..... . -.+.+..
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~---~~~~~~~ 230 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-V---PENEIEE 230 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-C---CHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHH
Confidence 122378888776542211 11 1368899999999999998753211111 1 1356789
Q ss_pred HHHHcCCchhhhHhhhhhhhcCCChhHHH-HHHc-------ccccCCC-cccchHHHhhhhccCCCCCccCHHHHHHHHH
Q 042891 314 IVKKCNGLPLVAKSLGGLLRVKYDPNDWE-DVHN-------CKIWKLS-EEDLLKQCIAYCSLLPKDYEFQQEEIILLWM 384 (423)
Q Consensus 314 I~~~c~GlPlai~~~g~~L~~~~~~~~W~-~~~~-------~~~~~~~-~~~~lk~cfly~s~FP~~~~i~~~~Li~~Wi 384 (423)
|...|+|+|+++..++..+....+...+. .+.+ .....+. .....+..+..++. + .++...+....-
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~ 306 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLA 306 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHH
Confidence 99999999999999887653322222221 1111 1111110 01255667777776 2 134445544432
Q ss_pred HcCcccCCCCCCcHHHHHHHHHHHHHhcCccccc
Q 042891 385 VEGFLNHESDKKQMENLCRKYFQELYSRSFFQLS 418 (423)
Q Consensus 385 aeg~i~~~~~~~~~e~~~~~~~~eL~~r~l~q~~ 418 (423)
+. . .+ . .......|++.|...+|+...
T Consensus 307 ~~-~----~~-~-~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 307 VK-G----TK-I-PEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HT-T----CC-C-CHHHHHHHHHHHHHTTSEEEE
T ss_pred HH-h----CC-C-CHHHHHHHHHHHHhCCCEEec
Confidence 21 1 01 1 124467899999999999764
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.92 E-value=5.2e-09 Score=100.17 Aligned_cols=229 Identities=13% Similarity=0.160 Sum_probs=129.0
Q ss_pred cCCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc-----CcHH
Q 042891 158 NEAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED-----FDII 232 (423)
Q Consensus 158 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 232 (423)
....|+||+.+++.|.+ +. . +++.|+|++|+|||||++.+.+.. .. ..+|++.... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~------~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR------A---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC------S---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc------C---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 34579999999999999 72 1 599999999999999999999853 21 2456655421 1111
Q ss_pred HHHH----------------------------------------------HHHHHhhc---CC----CCCcCC------C
Q 042891 233 WVTK----------------------------------------------SILKSIAS---DQ----LVDDRD------L 253 (423)
Q Consensus 233 ~~~~----------------------------------------------~il~~l~~---~~----~~~~~~------~ 253 (423)
.++. .++..+.. .. .++... .
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 1111 12211111 00 001111 0
Q ss_pred -------------CceeeEeccCCHHHHhhc-----------CC-CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHH
Q 042891 254 -------------NLLQIVITTRNLCVVEKT-----------GT-LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLK 308 (423)
Q Consensus 254 -------------~~l~ilvTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~ 308 (423)
..+.+|+|++........ +. ...+.+.+|+.+++.+++........ ... ..
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~-~~-- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDF-KD-- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCC-CC--
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCC-Cc--
Confidence 112388898876543211 11 13688999999999999987532111 111 11
Q ss_pred HHHHHHHHHcCCchhhhHhhhhhhhcCCChhHHHHH--------HcccccCC-----CcccchHHHhhhhccCCCCCccC
Q 042891 309 EIGEKIVKKCNGLPLVAKSLGGLLRVKYDPNDWEDV--------HNCKIWKL-----SEEDLLKQCIAYCSLLPKDYEFQ 375 (423)
Q Consensus 309 ~~~~~I~~~c~GlPlai~~~g~~L~~~~~~~~W~~~--------~~~~~~~~-----~~~~~lk~cfly~s~FP~~~~i~ 375 (423)
...|+..|+|+|+++..++..+....+...|..- +......+ ......+..+..++.-| +
T Consensus 232 --~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g~-----~ 304 (357)
T 2fna_A 232 --YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSKCG-----K 304 (357)
T ss_dssp --HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCB-----C
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCC-----C
Confidence 1789999999999999998876543333333211 11111100 11125667777777622 3
Q ss_pred HHHHHHHHH-HcCcccCCCCCCcHHHHHHHHHHHHHhcCcccccC
Q 042891 376 QEEIILLWM-VEGFLNHESDKKQMENLCRKYFQELYSRSFFQLSS 419 (423)
Q Consensus 376 ~~~Li~~Wi-aeg~i~~~~~~~~~e~~~~~~~~eL~~r~l~q~~~ 419 (423)
...|-...- ..|. . . .......+++.|+..+|+...+
T Consensus 305 ~~~l~~~~~~~~g~-----~-~-~~~~~~~~L~~L~~~gli~~~~ 342 (357)
T 2fna_A 305 WSDVKRALELEEGI-----E-I-SDSEIYNYLTQLTKHSWIIKEG 342 (357)
T ss_dssp HHHHHHHHHHHHCS-----C-C-CHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHHhcCC-----C-C-CHHHHHHHHHHHHhCCCEEecC
Confidence 344432210 1121 0 1 1234578999999999997653
No 9
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=3.4e-09 Score=100.41 Aligned_cols=248 Identities=11% Similarity=0.037 Sum_probs=126.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHH----
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVT---- 235 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~---- 235 (423)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+++.. ...| ++++.+......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~~~---~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GVNL---RVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TCCE---EEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEeccccCChHHHHHHHH
Confidence 4699999999998888753110 01133578899999999999999998732 1111 122222111111111
Q ss_pred ----------------------HHHHHHhhcCC---CCCc----CC----CCceeeEeccCCHH-HHhhcCC--CCcccC
Q 042891 236 ----------------------KSILKSIASDQ---LVDD----RD----LNLLQIVITTRNLC-VVEKTGT--LPAYPL 279 (423)
Q Consensus 236 ----------------------~~il~~l~~~~---~~~~----~~----~~~l~ilvTTR~~~-v~~~~~~--~~~~~l 279 (423)
..++..+.... ..+. .. .....+|.||.... +...+.. ...+.+
T Consensus 86 ~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l 165 (324)
T 1hqc_A 86 NSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL 165 (324)
T ss_dssp TTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEEC
T ss_pred HhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEec
Confidence 11111111100 0000 00 01122444444321 1111111 136889
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhhhc--------CCChhHHHHHHcccccC
Q 042891 280 KELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLLRV--------KYDPNDWEDVHNCKIWK 351 (423)
Q Consensus 280 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L~~--------~~~~~~W~~~~~~~~~~ 351 (423)
.+++.++..+++...+....... -.+....++..|+|.|-.+..+...+.. ..+.+....++......
T Consensus 166 ~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 166 EYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 99999999999988764322111 1366788999999999877665543321 13344455544332211
Q ss_pred CCccc-chHHHhhhh-ccCCCC----------CccCHHHHHH----HHHHcCcccCCCCCCcHHHHHHHHHH-HHHhcCc
Q 042891 352 LSEED-LLKQCIAYC-SLLPKD----------YEFQQEEIIL----LWMVEGFLNHESDKKQMENLCRKYFQ-ELYSRSF 414 (423)
Q Consensus 352 ~~~~~-~lk~cfly~-s~FP~~----------~~i~~~~Li~----~Wiaeg~i~~~~~~~~~e~~~~~~~~-eL~~r~l 414 (423)
..... .-+..+... ..|..+ ..+++..|-+ +=+.+|||.....+....+.|..||+ ++++|+|
T Consensus 242 ~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~ 321 (324)
T 1hqc_A 242 ELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPL 321 (324)
T ss_dssp TTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC---
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCC
Confidence 11100 111121111 112111 1245544433 34568999876666677899999998 9999999
Q ss_pred ccc
Q 042891 415 FQL 417 (423)
Q Consensus 415 ~q~ 417 (423)
+||
T Consensus 322 ~~~ 324 (324)
T 1hqc_A 322 LEP 324 (324)
T ss_dssp ---
T ss_pred CCC
Confidence 997
No 10
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.77 E-value=7.5e-08 Score=93.15 Aligned_cols=242 Identities=14% Similarity=0.051 Sum_probs=130.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc----cCccceeeEEeCCcCcHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH----NHFDLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~ 235 (423)
..++||+.+++.+..+|...- .......+.|+|++|+||||||+.+++...-. +.-...+|++.....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 679999999999999885421 12345689999999999999999999843111 001234566655544444333
Q ss_pred HHHHH----------------------HhhcCC------CCCcCC-----------------------CCceeeEeccCC
Q 042891 236 KSILK----------------------SIASDQ------LVDDRD-----------------------LNLLQIVITTRN 264 (423)
Q Consensus 236 ~~il~----------------------~l~~~~------~~~~~~-----------------------~~~l~ilvTTR~ 264 (423)
..++. .+.... .++.+. -..+.+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 33333 221110 000000 001125566654
Q ss_pred H--------HHHhhcCCCCcccCCCCChhhHHHHHHHhhc---CCCCCCCCccHHHHHHHHHHHcC---Cchh-hhHhhh
Q 042891 265 L--------CVVEKTGTLPAYPLKELSNNDCLSVFTQHSL---GEKDFSTHPSLKEIGEKIVKKCN---GLPL-VAKSLG 329 (423)
Q Consensus 265 ~--------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~l~~~~~~I~~~c~---GlPl-ai~~~g 329 (423)
. .+...++ ...+.+++++.++..+++...+. ...... + +..+.+++.++ |.|- ++.++.
T Consensus 177 ~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~--~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLD--P---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp STTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC--S---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC--H---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4 2222221 13689999999999999988742 222111 2 34567777777 9993 333332
Q ss_pred hhhh-------cCCChhHHHHHHcccc--------cCCCcccchHHHhhh-hc-cCCCCCccCHHHHHHHHHH----cCc
Q 042891 330 GLLR-------VKYDPNDWEDVHNCKI--------WKLSEEDLLKQCIAY-CS-LLPKDYEFQQEEIILLWMV----EGF 388 (423)
Q Consensus 330 ~~L~-------~~~~~~~W~~~~~~~~--------~~~~~~~~lk~cfly-~s-~FP~~~~i~~~~Li~~Wia----eg~ 388 (423)
.... ...+.+.+..++.... ..++ ....++++ .. ++-..-.+....+.+.... .|
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~---~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLP---LHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG- 326 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCC---HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-
Confidence 2221 1145666666654422 1222 22333333 22 2322224555544444322 22
Q ss_pred ccCCCCCCcHHHHHHHHHHHHHhcCccccc
Q 042891 389 LNHESDKKQMENLCRKYFQELYSRSFFQLS 418 (423)
Q Consensus 389 i~~~~~~~~~e~~~~~~~~eL~~r~l~q~~ 418 (423)
+. .........++++|...|++...
T Consensus 327 ~~-----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 327 LE-----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CC-----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 11 11245678899999999999874
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.76 E-value=5.5e-08 Score=87.34 Aligned_cols=163 Identities=14% Similarity=0.057 Sum_probs=97.1
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc-------------------cce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-------------------DLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-------------------~~~ 220 (423)
..++||+..++.|..++.... ....+.|+|++|+||||||+.+++.......+ ...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 469999999999999996532 23588999999999999999998743211111 011
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCC----------------CceeeEeccCCHH-HHhh-cCC
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDL----------------NLLQIVITTRNLC-VVEK-TGT 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~----------------~~l~ilvTTR~~~-v~~~-~~~ 273 (423)
..+.... ......+..++..+..... ++.+.+ ....+|+||+... +... ...
T Consensus 98 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r 176 (250)
T 1njg_A 98 IEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 176 (250)
T ss_dssp EEEETTC-GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred EEecCcc-cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH
Confidence 1222121 1222334455554432110 011111 1112666665532 2111 112
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhhhh
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGGLL 332 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~~L 332 (423)
...+.+++++.++..+++...+...... --.+....|++.|+|.|..+..+...+
T Consensus 177 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 177 CLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2478999999999999998876432211 113567899999999999887766543
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.71 E-value=4.1e-07 Score=88.09 Aligned_cols=248 Identities=11% Similarity=0.044 Sum_probs=137.8
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc-cceeeEEeCCcCcHHHHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-DLKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 238 (423)
..++||+.+++.|..++...-....+..+.+.|+|++|+|||||++.+++.. .... ...++++.+...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH--TTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH--hhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 5799999999999998864210011223489999999999999999999843 2221 235666666655556666665
Q ss_pred HHHhhcCC----------------------------CCCcCCC--------------------CceeeEeccCCHHHHhh
Q 042891 239 LKSIASDQ----------------------------LVDDRDL--------------------NLLQIVITTRNLCVVEK 270 (423)
Q Consensus 239 l~~l~~~~----------------------------~~~~~~~--------------------~~l~ilvTTR~~~v~~~ 270 (423)
+..++... .++.+.+ ..+.+|++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 55443210 0000000 12236677766544332
Q ss_pred cC-------CCCcccCCCCChhhHHHHHHHhhcCC-CCCCCCccHHHHHHHHHHHc---------CCchhhhHhhhhh-h
Q 042891 271 TG-------TLPAYPLKELSNNDCLSVFTQHSLGE-KDFSTHPSLKEIGEKIVKKC---------NGLPLVAKSLGGL-L 332 (423)
Q Consensus 271 ~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~c---------~GlPlai~~~g~~-L 332 (423)
+. ....+.+++++.++..+++...+... ... .--.+....|++.+ +|.|-.+..+... .
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG---SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT---SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21 11368999999999999998775320 011 11246678889998 7876544333222 2
Q ss_pred h-----c--CCChhHHHHHHccccc--------CCCcccchHHHhhhhccCC---CCCccCHHHHHHHHHH----cCccc
Q 042891 333 R-----V--KYDPNDWEDVHNCKIW--------KLSEEDLLKQCIAYCSLLP---KDYEFQQEEIILLWMV----EGFLN 390 (423)
Q Consensus 333 ~-----~--~~~~~~W~~~~~~~~~--------~~~~~~~lk~cfly~s~FP---~~~~i~~~~Li~~Wia----eg~i~ 390 (423)
. . ..+.+....+...... .++. +.+.++..++.+. .+-.+....+...+-. .|...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~--~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPL--HEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP 329 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCH--HHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCH--HHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC
Confidence 1 1 1233333333332211 1111 3344444444443 2224566666665543 22111
Q ss_pred CCCCCCcHHHHHHHHHHHHHhcCcccccCC
Q 042891 391 HESDKKQMENLCRKYFQELYSRSFFQLSSS 420 (423)
Q Consensus 391 ~~~~~~~~e~~~~~~~~eL~~r~l~q~~~~ 420 (423)
.+ ......++++|...+++.....
T Consensus 330 -----~~-~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 330 -----RV-HSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp -----CC-HHHHHHHHHHHHHTTSSEEEEC
T ss_pred -----CC-HHHHHHHHHHHHhCCCeEEeee
Confidence 11 2345789999999999987543
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.66 E-value=3.1e-07 Score=81.20 Aligned_cols=158 Identities=14% Similarity=0.105 Sum_probs=91.4
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc-ceeeEEeCCcCcHHHHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-LKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 238 (423)
..++|++..++.+.+++... ....+.|+|++|+|||+||+.+++... ...+. ..+.+..+.......+...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHK- 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHH-
Confidence 46899999999999999643 223489999999999999999987421 11121 1233333333333333222
Q ss_pred HHHhhcC-CC----------CCcCCC----------------CceeeEeccCCHH-HHhh-cCCCCcccCCCCChhhHHH
Q 042891 239 LKSIASD-QL----------VDDRDL----------------NLLQIVITTRNLC-VVEK-TGTLPAYPLKELSNNDCLS 289 (423)
Q Consensus 239 l~~l~~~-~~----------~~~~~~----------------~~l~ilvTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~ 289 (423)
+..+... .. ++.+.+ ....+|+||+... +... ......+.+.+++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~ 168 (226)
T 2chg_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168 (226)
T ss_dssp HHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHH
Confidence 2222111 00 011111 0112666766542 1111 1112378999999999999
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhh
Q 042891 290 VFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLG 329 (423)
Q Consensus 290 Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g 329 (423)
++...+...... --.+....|++.++|.|..+..+.
T Consensus 169 ~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 169 RLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998876422111 113567788999999998655443
No 14
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.62 E-value=3.4e-08 Score=95.50 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=92.4
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc---cceeeEEeCCcCc-----
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF---DLKSWTCVSEDFD----- 230 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~----- 230 (423)
...|+||+.+++.|.+++...- .......+.|+|++|+||||||+.+++. ....+ ...+|++.....+
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 3679999999999999886421 0234568999999999999999999984 32222 2345565433222
Q ss_pred -----------------HHHHHHHHHHHhhcCC------CCC---------cCCC------------CceeeEeccCCHH
Q 042891 231 -----------------IIWVTKSILKSIASDQ------LVD---------DRDL------------NLLQIVITTRNLC 266 (423)
Q Consensus 231 -----------------~~~~~~~il~~l~~~~------~~~---------~~~~------------~~l~ilvTTR~~~ 266 (423)
..++...+...+.... .++ ...+ ..+.+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 2333333333322110 000 0000 0122677776553
Q ss_pred HHhhcC-------CCCcccCCCCChhhHHHHHHHhhcC-CCCCCCCccHHHHHHHHHHHcC---CchhhhH
Q 042891 267 VVEKTG-------TLPAYPLKELSNNDCLSVFTQHSLG-EKDFSTHPSLKEIGEKIVKKCN---GLPLVAK 326 (423)
Q Consensus 267 v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~l~~~~~~I~~~c~---GlPlai~ 326 (423)
....+. ....+.+++++.++..++|...+.. ..... -..+....+++.++ |.|..+.
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGV---LPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSC---SCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCC---CCHHHHHHHHHHHHHhcCCHHHHH
Confidence 322211 1137899999999999999876421 11111 12355667777777 9887443
No 15
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.60 E-value=3.2e-07 Score=88.77 Aligned_cols=179 Identities=11% Similarity=0.063 Sum_probs=105.3
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc----cC--ccceeeEEeCCcC-cHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH----NH--FDLKSWTCVSEDF-DII 232 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~ 232 (423)
..++||+.+++.+.++|...- .....+.+.|+|++|+||||||+.+++...-. .. ....+|++.+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 679999999999998875411 12245689999999999999999999843111 11 2345677655544 444
Q ss_pred HHHHHHHHHh-----------------------hcCC----CCCcCC------C-----------CceeeEeccCCHH--
Q 042891 233 WVTKSILKSI-----------------------ASDQ----LVDDRD------L-----------NLLQIVITTRNLC-- 266 (423)
Q Consensus 233 ~~~~~il~~l-----------------------~~~~----~~~~~~------~-----------~~l~ilvTTR~~~-- 266 (423)
.++..++..+ .... .++.+. . ..+.+|+||+...
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 5555444443 1110 000000 1 1223777777542
Q ss_pred ------HHhhcCCCCcccCCCCChhhHHHHHHHhhc---CCCCCCCCccHHHHHHHHHHHcC---Cchh-hhHhhhhhh-
Q 042891 267 ------VVEKTGTLPAYPLKELSNNDCLSVFTQHSL---GEKDFSTHPSLKEIGEKIVKKCN---GLPL-VAKSLGGLL- 332 (423)
Q Consensus 267 ------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~l~~~~~~I~~~c~---GlPl-ai~~~g~~L- 332 (423)
+...++ ..+.+++++.++..++|...+. ...... .+..+.|++.|+ |.|. ++..+-...
T Consensus 178 ~~l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 178 DYMEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-----DEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTSCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-----SHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hhhCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcC-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 222222 2899999999999999998753 222111 245667777777 8776 433332222
Q ss_pred -h---cCCChhHHHHHHcc
Q 042891 333 -R---VKYDPNDWEDVHNC 347 (423)
Q Consensus 333 -~---~~~~~~~W~~~~~~ 347 (423)
. ...+.+.+..++..
T Consensus 251 ~a~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHH
Confidence 1 12466777776654
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=4.3e-07 Score=85.55 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=92.4
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc-cceeeEEeCCcCcHHHHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-DLKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 238 (423)
..++|++..++.+.+++... ..+.+.++|++|+||||+|+.+++... ...+ ...++++.+...... ...++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHHHH
Confidence 46899999999999998643 233389999999999999999988421 1111 123344444433332 33344
Q ss_pred HHHhhc--CCC----------CCcCCCC----------------ceeeEeccCCH-HHHhhc-CCCCcccCCCCChhhHH
Q 042891 239 LKSIAS--DQL----------VDDRDLN----------------LLQIVITTRNL-CVVEKT-GTLPAYPLKELSNNDCL 288 (423)
Q Consensus 239 l~~l~~--~~~----------~~~~~~~----------------~l~ilvTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~ 288 (423)
+..+.. ... ++.+.+. ...+|+||... .+...+ +....+.+.+++.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~ 172 (323)
T 1sxj_B 93 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVL 172 (323)
T ss_dssp HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHH
T ss_pred HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHH
Confidence 443320 000 0111110 01155555442 221111 22247899999999999
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchh-hhHhhhhh
Q 042891 289 SVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPL-VAKSLGGL 331 (423)
Q Consensus 289 ~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPl-ai~~~g~~ 331 (423)
+++...+....-. --.+....|++.|+|.|. |+..+...
T Consensus 173 ~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 173 KRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9998875321111 113567889999999995 44444433
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.10 E-value=7.9e-05 Score=70.59 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=89.8
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc--------------------
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-------------------- 218 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-------------------- 218 (423)
-..++|++..++.+..++..... .......|.|+|++|+|||+||+.+.+.. ...|-
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYEM--SANIKTTAAPMIEKSGDLAAILTNL 104 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHHT--TCCEEEEEGGGCCSHHHHHHHHHTC
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCeEEecchhccchhHHHHHHHhc
Confidence 35799999999999988864210 11234568999999999999999998742 22220
Q ss_pred ---ceeeEEeCCcCcHHHHHHHHHHHhhcCCCC---------C--cCCCCceeeEeccCCH-----HHHhhcCCCCcccC
Q 042891 219 ---LKSWTCVSEDFDIIWVTKSILKSIASDQLV---------D--DRDLNLLQIVITTRNL-----CVVEKTGTLPAYPL 279 (423)
Q Consensus 219 ---~~~wv~vs~~~~~~~~~~~il~~l~~~~~~---------~--~~~~~~l~ilvTTR~~-----~v~~~~~~~~~~~l 279 (423)
.+++++--+... ...+..++..+...... . ........+|.+|... .+... ....+.+
T Consensus 105 ~~~~vl~lDEi~~l~-~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R--~~~~i~l 181 (338)
T 3pfi_A 105 SEGDILFIDEIHRLS-PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR--FGMQFRL 181 (338)
T ss_dssp CTTCEEEEETGGGCC-HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT--CSEEEEC
T ss_pred cCCCEEEEechhhcC-HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh--cCEEeeC
Confidence 122222111111 22333333333222110 0 0011123345444432 22222 1247899
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 280 KELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 280 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
++++.++...++...+..... .--.+....|++.+.|.|-.+..+
T Consensus 182 ~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 182 EFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999877632221 112456778888999998554433
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=8.1e-06 Score=76.84 Aligned_cols=156 Identities=14% Similarity=0.128 Sum_probs=88.6
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc-cceeeEEeCCcCcHHHHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-DLKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i 238 (423)
.+++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++... ...+ ...+.+..+..... +.....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHH
Confidence 45899999999999998653 333489999999999999999987421 1111 11222332322111 111122
Q ss_pred HHHhhc------CC-----CCCcCCC----------------CceeeEeccCCHH-----HHhhcCCCCcccCCCCChhh
Q 042891 239 LKSIAS------DQ-----LVDDRDL----------------NLLQIVITTRNLC-----VVEKTGTLPAYPLKELSNND 286 (423)
Q Consensus 239 l~~l~~------~~-----~~~~~~~----------------~~l~ilvTTR~~~-----v~~~~~~~~~~~l~~L~~~~ 286 (423)
+..... .. .++.+.+ ....+|+||.... +...+ ..+.+.+++.++
T Consensus 97 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~ 173 (327)
T 1iqp_A 97 VKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDED 173 (327)
T ss_dssp HHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHH
T ss_pred HHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHH
Confidence 221110 00 0011111 0112566665432 22222 368899999999
Q ss_pred HHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhhh
Q 042891 287 CLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLGG 330 (423)
Q Consensus 287 ~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g~ 330 (423)
...++...+....-. --.+....|++.++|.|..+..+..
T Consensus 174 ~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 174 IAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999998876432211 1135678899999999986655443
No 19
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.00 E-value=5e-05 Score=67.85 Aligned_cols=149 Identities=9% Similarity=0.055 Sum_probs=80.9
Q ss_pred Cceeeec---chHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc--------
Q 042891 160 AKVYGRD---KEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED-------- 228 (423)
Q Consensus 160 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-------- 228 (423)
..|+|.+ ...+.+..++.. .....+.|+|++|+||||||+.+++... .......|++.+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 99 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASISTALL 99 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGSCGGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHHHHHHH
Confidence 3566633 445555555532 1346889999999999999999987421 11122233332211
Q ss_pred ----------------C--cH--HHHHHHHHHHhhcCCCCCcCCCCceeeEeccCC---------HHHHhhcCCCCcccC
Q 042891 229 ----------------F--DI--IWVTKSILKSIASDQLVDDRDLNLLQIVITTRN---------LCVVEKTGTLPAYPL 279 (423)
Q Consensus 229 ----------------~--~~--~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~---------~~v~~~~~~~~~~~l 279 (423)
. +. ...+..++....... ...+|+||+. ..+...+.....+.+
T Consensus 100 ~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~--------~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l 171 (242)
T 3bos_A 100 EGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQK--------RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQL 171 (242)
T ss_dssp TTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHC--------SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEEC
T ss_pred HhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEe
Confidence 0 11 222222222221111 0125666552 222222222247899
Q ss_pred CCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 280 KELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 280 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
++++.++..+++...+....-. -..+....|++.++|.+-.+..+
T Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 172 QPMMDDEKLAALQRRAAMRGLQ----LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCCGGGHHHHHHHHHHHTTCC----CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999998876322111 11456778899999987665443
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.88 E-value=4.4e-05 Score=73.22 Aligned_cols=160 Identities=14% Similarity=0.064 Sum_probs=88.9
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCc-------------------cce
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF-------------------DLK 220 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F-------------------~~~ 220 (423)
.+++|++..++.+.+++.... ....+.|+|++|+||||+|+.+.+.......+ ...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 90 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSC
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCce
Confidence 359999999999999986532 23478899999999999999998743211110 011
Q ss_pred eeEEeCCcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------ceeeEeccC-CHHHHhh-cCC
Q 042891 221 SWTCVSEDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQIVITTR-NLCVVEK-TGT 273 (423)
Q Consensus 221 ~wv~vs~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~ilvTTR-~~~v~~~-~~~ 273 (423)
+.+..+.... .+....++..+..... ++.+.+. ...+|++|. ...+... ..-
T Consensus 91 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 169 (373)
T 1jr3_A 91 IEIDAASRTK-VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR 169 (373)
T ss_dssp EEEETTCSCC-SSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT
T ss_pred EEecccccCC-HHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh
Confidence 2222221111 1112333333321110 0111110 111444443 3322111 112
Q ss_pred CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhh
Q 042891 274 LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLG 329 (423)
Q Consensus 274 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g 329 (423)
...+.+.+++.++..+++...+-..... --.+....|++.++|.|..+..+.
T Consensus 170 ~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 170 CLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred eeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2478899999999999998765321111 113557789999999998776554
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.78 E-value=6e-05 Score=70.52 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=87.0
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc-ceeeEEeCCcC---cHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-LKSWTCVSEDF---DIIWVT 235 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~---~~~~~~ 235 (423)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+.+... ...+. ..+.++.+... ...+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTTSSHHH
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHHHHHHH
Confidence 45899999999998888532 333489999999999999999987421 11111 12223333221 122222
Q ss_pred HHHHHHhhcC-C------CCCcCCC----------------CceeeEeccCCHH-HHhhc-CCCCcccCCCCChhhHHHH
Q 042891 236 KSILKSIASD-Q------LVDDRDL----------------NLLQIVITTRNLC-VVEKT-GTLPAYPLKELSNNDCLSV 290 (423)
Q Consensus 236 ~~il~~l~~~-~------~~~~~~~----------------~~l~ilvTTR~~~-v~~~~-~~~~~~~l~~L~~~~~~~L 290 (423)
.......... . .++.+.+ ....+|+||.... +...+ .....+.+.+++.++..++
T Consensus 90 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 169 (319)
T 2chq_A 90 KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKR 169 (319)
T ss_dssp HHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHH
T ss_pred HHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHH
Confidence 3322111100 0 0011100 1112555554432 21111 1224789999999999999
Q ss_pred HHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 291 FTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 291 f~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
+...+....-. --.+....|+..++|.+-.+...
T Consensus 170 l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 170 LLEICEKEGVK----ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp HHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 98776432211 11356778889999988765443
No 22
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=0.00075 Score=67.84 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=39.9
Q ss_pred CceeeecchHHHHHHHHhcCC-----------CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDD-----------LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|++..++.|.++|.... ....+..+.+.|+|++|+||||||+.+++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999986410 001123468999999999999999999984
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=0.00011 Score=69.85 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=86.3
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc-ceeeEEeCCcCcHHHHHHH
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-LKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~ 237 (423)
-..++|++..++.+..++... ....+.++|++|+||||+|+.+.+.......+. ..+.+..+.......+ .+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-RE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TT
T ss_pred HHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HH
Confidence 356899999999999998543 223389999999999999999987421111111 1122233332222222 22
Q ss_pred HHHHhhcC----------------C-----CCCcCCCC----------------ceeeEecc-CCHH----HHhhcCCCC
Q 042891 238 ILKSIASD----------------Q-----LVDDRDLN----------------LLQIVITT-RNLC----VVEKTGTLP 275 (423)
Q Consensus 238 il~~l~~~----------------~-----~~~~~~~~----------------~l~ilvTT-R~~~----v~~~~~~~~ 275 (423)
.+...... . .++.+.+. ...+|++| .... +...+ .
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~---~ 185 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC---S 185 (353)
T ss_dssp HHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS---E
T ss_pred HHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC---c
Confidence 22111110 0 00111110 01144444 3322 22222 3
Q ss_pred cccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 276 AYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 276 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
.+.+.+++.++....+...+....-.. -.+....|++.++|.|-.+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 688999999999999888763322111 1466789999999999765443
No 24
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.69 E-value=3.1e-05 Score=66.34 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=38.2
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+..++.+.+++.. .....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~------~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR------RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS------SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc------CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999854 23456789999999999999999874
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.64 E-value=0.00012 Score=67.47 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=38.5
Q ss_pred CCceeeecchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDL-------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-..++|.+..++.|.+.+...-. .+......+.|+|++|+|||+||+.+++.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45689999999999887743100 00123456899999999999999999884
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.61 E-value=0.00031 Score=63.73 Aligned_cols=51 Identities=27% Similarity=0.237 Sum_probs=35.4
Q ss_pred CceeeecchHHHHHHHHh---cCCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLL---SDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|.+..++.|.+++. .... .+....+.|.|+|++|+|||+||+.+++.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468899888877766542 2110 01123456889999999999999999884
No 27
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.58 E-value=4.6e-05 Score=65.08 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=38.0
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.+++.+.+.+... ....+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999542 3456789999999999999999874
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.43 E-value=0.00022 Score=70.22 Aligned_cols=154 Identities=20% Similarity=0.146 Sum_probs=82.5
Q ss_pred CceeeecchH---HHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCc-CcHH---
Q 042891 160 AKVYGRDKEK---EETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSED-FDII--- 232 (423)
Q Consensus 160 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~--- 232 (423)
.+++|.+..+ ..|...+... ....+.++|++|+||||||+.+.+. ....| +.++.. ....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHHHH
Confidence 4688888777 6777777543 3468999999999999999999984 33322 222211 2222
Q ss_pred HHHHHHHHHhhcCC-----CCCcCCCC-----c---------ee-eEeccCCHH--H-HhhcCCCCcccCCCCChhhHHH
Q 042891 233 WVTKSILKSIASDQ-----LVDDRDLN-----L---------LQ-IVITTRNLC--V-VEKTGTLPAYPLKELSNNDCLS 289 (423)
Q Consensus 233 ~~~~~il~~l~~~~-----~~~~~~~~-----~---------l~-ilvTTR~~~--v-~~~~~~~~~~~l~~L~~~~~~~ 289 (423)
.++........... .++.+.+. . +. |..||.+.. + ....+-..++.+.+++.++...
T Consensus 93 ~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~ 172 (447)
T 3pvs_A 93 EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQ 172 (447)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHH
T ss_pred HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHH
Confidence 22222221111000 01111111 1 11 444665542 1 1111222478899999999999
Q ss_pred HHHHhhcCCCCC---CCCccHHHHHHHHHHHcCCchhhhH
Q 042891 290 VFTQHSLGEKDF---STHPSLKEIGEKIVKKCNGLPLVAK 326 (423)
Q Consensus 290 Lf~~~a~~~~~~---~~~~~l~~~~~~I~~~c~GlPlai~ 326 (423)
++....-..... ....-..+....|++.++|.+-.+.
T Consensus 173 il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 173 VLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 988775431110 0001123566778888888765443
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.43 E-value=8.4e-05 Score=69.57 Aligned_cols=81 Identities=10% Similarity=-0.045 Sum_probs=53.6
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcccccc------CccceeeEEeCCcCcHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHN------HFDLKSWTCVSEDFDIIW 233 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~------~F~~~~wv~vs~~~~~~~ 233 (423)
..+.||+++.++|...|...- ..+....+-|+|++|+|||++++.|++...-.. .| ..+.++.....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 348899999999998876421 123567889999999999999999998542111 12 234455444445556
Q ss_pred HHHHHHHHhh
Q 042891 234 VTKSILKSIA 243 (423)
Q Consensus 234 ~~~~il~~l~ 243 (423)
++..|++++.
T Consensus 97 ~~~~I~~~L~ 106 (318)
T 3te6_A 97 LYEKIWFAIS 106 (318)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 6666666663
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.36 E-value=0.00061 Score=67.01 Aligned_cols=155 Identities=15% Similarity=-0.028 Sum_probs=83.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCcc--ceeeEEeCCcCcHHHHHHH--------HHHHhh-cCC---CCCcCC
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD--LKSWTCVSEDFDIIWVTKS--------ILKSIA-SDQ---LVDDRD 252 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~--------il~~l~-~~~---~~~~~~ 252 (423)
...+.|+|++|+||||||+.+++. ....|. ..++++.+.- ..++... +..... ... .++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSEKF--LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQF 205 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHHHH--HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHHHH--HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccc
Confidence 567999999999999999999983 333332 2334433221 1111111 111111 110 011111
Q ss_pred CC-------------------ceeeEeccCC---------HHHHhhcCCCCcccCCCCChhhHHHHHHHhhcCCCCCCCC
Q 042891 253 LN-------------------LLQIVITTRN---------LCVVEKTGTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTH 304 (423)
Q Consensus 253 ~~-------------------~l~ilvTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~ 304 (423)
+. ...||+||.+ ..+...+.....+.+++++.++...++...+....- ..+
T Consensus 206 l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~ 284 (440)
T 2z4s_A 206 LIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELP 284 (440)
T ss_dssp GSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCC
T ss_pred ccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC
Confidence 11 0127777765 334444443457899999999999999887632111 111
Q ss_pred ccHHHHHHHHHHHcCCchhhhHhhhhh------hhc-CCChhHHHHHHcccc
Q 042891 305 PSLKEIGEKIVKKCNGLPLVAKSLGGL------LRV-KYDPNDWEDVHNCKI 349 (423)
Q Consensus 305 ~~l~~~~~~I~~~c~GlPlai~~~g~~------L~~-~~~~~~W~~~~~~~~ 349 (423)
.+....|+..+.|.+-.+.-+-.. +.. ..+.+.+..++....
T Consensus 285 ---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 285 ---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp ---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred ---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 134677888999987544322211 112 256777887776543
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.30 E-value=0.0022 Score=61.16 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=36.3
Q ss_pred CCceeeecchHHH---HHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 159 EAKVYGRDKEKEE---TVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 159 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
...++|++..++. +.+.+.... ...+.+.|+|++|+|||+||+.+.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999988766 455554322 123688999999999999999998843
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.26 E-value=0.0047 Score=56.33 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=34.5
Q ss_pred CceeeecchHHHHHH-------HHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVE-------LLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.....++++. .+... .......+.|+|++|+|||+||+.+++.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 356777777666665 33211 1235678999999999999999999884
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.20 E-value=0.0018 Score=60.89 Aligned_cols=52 Identities=27% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCceeeecchHHHHHHHHhcC----C--CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSD----D--LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++.|.+.+..+ . .......+-|.++|++|+|||+||+.+++.
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999998877310 0 001223457899999999999999999884
No 34
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.19 E-value=0.0028 Score=58.60 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=37.8
Q ss_pred CceeeecchHHHHHHHHhcCC------CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDD------LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.|.+++..+. .........+.|+|++|+||||||+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999999999988764310 000123467899999999999999999884
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.17 E-value=0.0044 Score=59.05 Aligned_cols=51 Identities=29% Similarity=0.320 Sum_probs=37.4
Q ss_pred CceeeecchHHHHHHHHhcC----CC--CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSD----DL--RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|.+..++.|.+.+..+ .. ......+-|.++|++|+|||+||+.+++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999998876321 00 01123356889999999999999999884
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.07 E-value=0.0048 Score=58.78 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=37.9
Q ss_pred CceeeecchHHHHHHHHhc----CCC--CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLS----DDL--RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.|.+.+.. ++. ......+.|.|+|++|+|||+||+.+++.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999887642 110 00123567899999999999999999874
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.0023 Score=60.58 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=80.5
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCcc-ceeeEEeCCcCcHHHHHHHH
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFD-LKSWTCVSEDFDIIWVTKSI 238 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i 238 (423)
..++|.+..++.|..++..+ .++.+.++|++|+||||+|+.+.+... ...+. ...-++.+.......+ +++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 45788888888888888543 233389999999999999999987421 11111 1112223322233222 222
Q ss_pred HHHhhc--CCC---------CCcCCCC----------------ceeeEecc-CCHHHHhhc-CCCCcccCCCCChhhHHH
Q 042891 239 LKSIAS--DQL---------VDDRDLN----------------LLQIVITT-RNLCVVEKT-GTLPAYPLKELSNNDCLS 289 (423)
Q Consensus 239 l~~l~~--~~~---------~~~~~~~----------------~l~ilvTT-R~~~v~~~~-~~~~~~~l~~L~~~~~~~ 289 (423)
+..+.. ... ++.+.+. ...+|++| ....+...+ +-...+.+.+++.++..+
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~ 176 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 176 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHH
Confidence 222221 000 0111110 11133443 322221111 111367899999999888
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhh
Q 042891 290 VFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVA 325 (423)
Q Consensus 290 Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai 325 (423)
.+...+-...-.- -....+.|++.++|.+--+
T Consensus 177 ~l~~~~~~~~~~i----~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 177 RIANVLVHEKLKL----SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHTTTCCB----CHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 8876652211111 1356778999999987643
No 38
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0042 Score=60.56 Aligned_cols=153 Identities=17% Similarity=0.158 Sum_probs=83.4
Q ss_pred CceeeecchHHHHHHHHhcC----CC---CCCCCceEEEEEccCCccHHHHHHHHHhcccc-------------------
Q 042891 160 AKVYGRDKEKEETVELLLSD----DL---RTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRV------------------- 213 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~------------------- 213 (423)
.++.|.+..+++|.+.+.-+ +. -+-...+-|.++|++|.|||+||+.+++....
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese 260 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHH
Confidence 46788888888887765321 00 01234578999999999999999999884310
Q ss_pred ---ccCc-------cceeeEEeCC-------------cCcHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHHhh
Q 042891 214 ---HNHF-------DLKSWTCVSE-------------DFDIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVVEK 270 (423)
Q Consensus 214 ---~~~F-------~~~~wv~vs~-------------~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~~~ 270 (423)
+..| .+++|+.--+ .......+..++.++.+... .+.+-||.||......+.
T Consensus 261 ~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-----~~~vivI~ATNrp~~LDp 335 (437)
T 4b4t_L 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-----LGQTKIIMATNRPDTLDP 335 (437)
T ss_dssp HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC-----TTSSEEEEEESSTTSSCT
T ss_pred HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC-----CCCeEEEEecCCchhhCH
Confidence 0111 2444543100 01123344455555543221 112226667755443221
Q ss_pred -c-CC---CCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCch
Q 042891 271 -T-GT---LPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLP 322 (423)
Q Consensus 271 -~-~~---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 322 (423)
+ .. +..+.++..+.++-.++|+.+.-.-. ...+.++ ..|++.+.|+-
T Consensus 336 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 336 ALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVK-KTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSC-BCSCCCH----HHHHHTCCSCC
T ss_pred HHhCCCccceeeecCCcCHHHHHHHHHHHhcCCC-CCcccCH----HHHHHhCCCCC
Confidence 1 11 23577887888888888887753322 1122233 56677777754
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.97 E-value=0.0062 Score=57.05 Aligned_cols=25 Identities=40% Similarity=0.335 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....+.|+|++|+||||||+.+++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999984
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.97 E-value=0.0083 Score=56.25 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=37.7
Q ss_pred CCceeeecchHHHHHHHHhc----CCC--CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLS----DDL--RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++.|.+.+.. ++. ......+-|.++|++|+|||+||+.+++.
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 34688999888888876632 110 01223467899999999999999999984
No 41
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.94 E-value=0.0059 Score=57.56 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=82.4
Q ss_pred chHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccc--------------------cCccceeeEEeC
Q 042891 167 KEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVH--------------------NHFDLKSWTCVS 226 (423)
Q Consensus 167 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~--------------------~~F~~~~wv~vs 226 (423)
...+.+.+.+..+. -...+-++|+.|+|||++|+.+.+...-. .|++ ..++...
T Consensus 9 ~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~ 82 (334)
T 1a5t_A 9 PDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCC
T ss_pred HHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecc
Confidence 44566677664322 34579999999999999999987632111 1122 2344332
Q ss_pred ---CcCcHHHHHHHHHHHhhcCCC---------CCcCCCC----------------cee-eEeccCCHHHHhhc-CCCCc
Q 042891 227 ---EDFDIIWVTKSILKSIASDQL---------VDDRDLN----------------LLQ-IVITTRNLCVVEKT-GTLPA 276 (423)
Q Consensus 227 ---~~~~~~~~~~~il~~l~~~~~---------~~~~~~~----------------~l~-ilvTTR~~~v~~~~-~~~~~ 276 (423)
....+.. .+++.+.+..... ++.+.+. ... |++|++...+...+ +-...
T Consensus 83 ~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~ 161 (334)
T 1a5t_A 83 KGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRL 161 (334)
T ss_dssp TTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhccee
Confidence 2333333 3456665543221 0111111 011 44454433332222 22247
Q ss_pred ccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhhh
Q 042891 277 YPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSLG 329 (423)
Q Consensus 277 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~g 329 (423)
+.+.+++.++..+.+.... .. . .+....+++.++|.|..+..+.
T Consensus 162 ~~~~~~~~~~~~~~L~~~~----~~-~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 162 HYLAPPPEQYAVTWLSREV----TM-S----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EECCCCCHHHHHHHHHHHC----CC-C----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred eeCCCCCHHHHHHHHHHhc----CC-C----HHHHHHHHHHcCCCHHHHHHHh
Confidence 8999999999999888774 11 1 2456789999999997665443
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.88 E-value=0.0006 Score=56.01 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=34.5
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|+...++++.+.+..-. ....-|-|+|.+|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999988775321 12234689999999999999999884
No 43
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.80 E-value=0.0053 Score=59.22 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=38.5
Q ss_pred CCceeeecchHHHHHHHHhcC----CC--CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSD----DL--RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++.|.+++... .. ......+-|.|+|++|+|||+||+.+++.
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999998877321 10 00112467899999999999999999874
No 44
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0051 Score=59.13 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=83.4
Q ss_pred CceeeecchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCccHHHHHHHHHhccc--------------------
Q 042891 160 AKVYGRDKEKEETVELLLS----DDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR-------------------- 212 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-------------------- 212 (423)
.++.|.+..+++|.+.+.- ++. -+-...+-|.++|++|.|||.||+.+++...
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHH
Confidence 4678888888888765432 100 0123456789999999999999999988431
Q ss_pred --cccCc-------cceeeEEeCC-------------cCcHHHHHHHHHHHhhcCCCCCcCCCCceeeEeccCCHHHHh-
Q 042891 213 --VHNHF-------DLKSWTCVSE-------------DFDIIWVTKSILKSIASDQLVDDRDLNLLQIVITTRNLCVVE- 269 (423)
Q Consensus 213 --~~~~F-------~~~~wv~vs~-------------~~~~~~~~~~il~~l~~~~~~~~~~~~~l~ilvTTR~~~v~~- 269 (423)
++.-| .+++|+.--+ .......+..++.++.+-. ..+.+-||.||......+
T Consensus 228 ~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----~~~~V~vIaATNrpd~LDp 302 (405)
T 4b4t_J 228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----TSKNIKIIMATNRLDILDP 302 (405)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----CCCCEEEEEEESCSSSSCH
T ss_pred HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----CCCCeEEEeccCChhhCCH
Confidence 11111 2344443100 0012234444444443221 111222566665443211
Q ss_pred h-c---CCCCcccCCCCChhhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCch
Q 042891 270 K-T---GTLPAYPLKELSNNDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLP 322 (423)
Q Consensus 270 ~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlP 322 (423)
. . .-+..+.++..+.++-.++|+.+.-. .....+.+ ...|++.+.|.-
T Consensus 303 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSCC----HHHHHHHCCSCC
T ss_pred hHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccCC----HHHHHHHCCCCC
Confidence 1 1 22457888888999989999877532 22222223 356777787754
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.77 E-value=0.011 Score=58.03 Aligned_cols=52 Identities=27% Similarity=0.292 Sum_probs=38.4
Q ss_pred CCceeeecchHHHHHHHHhc----CCC-C-CCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLS----DDL-R-TDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~----~~~-~-~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++.|.+.+.. +.. . .....+.|.++|++|+|||+||+.+++.
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999998887632 110 0 1123468899999999999999999984
No 46
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0033 Score=61.13 Aligned_cols=52 Identities=35% Similarity=0.292 Sum_probs=37.9
Q ss_pred CCceeeecchHHHHHHHHhcC----CC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSD----DL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.++.|.+..+++|.+.+.-+ +. -+-...+-|.++|++|+|||+||+.+++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 357889998888887765321 00 01234567999999999999999999984
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.68 E-value=0.00094 Score=66.26 Aligned_cols=45 Identities=31% Similarity=0.427 Sum_probs=37.4
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.+++.++..|... ...-+.++|++|+|||+||+.+.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999642 2234579999999999999999874
No 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.59 E-value=0.0018 Score=56.17 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=34.4
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV 225 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v 225 (423)
..+.+.+++..... ......+.|+|++|+|||+||+.+++.. ......+++++.
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~ 90 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEH
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEh
Confidence 34555566544321 1122678999999999999999999843 333344556654
No 49
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.58 E-value=0.002 Score=56.00 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=32.8
Q ss_pred ecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 165 RDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 165 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
|+..++.|.+.+.... .....+|+|+|+.|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777888776532 23457999999999999999999876
No 50
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0098 Score=58.05 Aligned_cols=51 Identities=27% Similarity=0.194 Sum_probs=36.8
Q ss_pred CceeeecchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLS----DDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..+++|.+.+.- ++. -+-...+-|.++|++|.|||+||+.+++.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3678888888888765421 100 01235678899999999999999999984
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.49 E-value=0.0021 Score=59.75 Aligned_cols=50 Identities=22% Similarity=0.164 Sum_probs=35.2
Q ss_pred ceeeecchHHHHHHHHhcC---------CCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLSD---------DLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~---------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|.+..++.|.+++... +.........+.|+|++|+|||+||+.+++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4788888888887665311 0001234457899999999999999988764
No 52
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0071 Score=56.26 Aligned_cols=124 Identities=9% Similarity=-0.035 Sum_probs=71.5
Q ss_pred eecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccc-cccCccceeeEEeCC-cCcHHHHHHHHHHH
Q 042891 164 GRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVR-VHNHFDLKSWTCVSE-DFDIIWVTKSILKS 241 (423)
Q Consensus 164 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~~~~il~~ 241 (423)
|-+..++.|.+.+..+ +.+..-++|++|+||||+|..+.+... ..........+..+. ...+.. .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3445567777777432 367899999999999999999977311 111122334555443 344433 3446665
Q ss_pred hhcCCCCCc------CCCCcee--------------------eEeccCCHHHHhhcCCCCcccCCCCChhhHHHHHHHhh
Q 042891 242 IASDQLVDD------RDLNLLQ--------------------IVITTRNLCVVEKTGTLPAYPLKELSNNDCLSVFTQHS 295 (423)
Q Consensus 242 l~~~~~~~~------~~~~~l~--------------------ilvTTR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 295 (423)
+........ ++.+.+. |++|+....+...+... .+++.+++.++..+.+....
T Consensus 74 ~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 74 LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred HhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 543221000 1111111 66666555555555455 89999999999999888765
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.0018 Score=63.05 Aligned_cols=51 Identities=31% Similarity=0.269 Sum_probs=37.6
Q ss_pred CceeeecchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLS----DDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..+++|.+.+.. ++. -+-...+-|.++|++|.|||.||+.+++.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4688999888888775422 110 01234678999999999999999999984
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.0055 Score=59.26 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=37.1
Q ss_pred CceeeecchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLS----DDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.++.+++|.+.+.- ++. -+-...+-|.++|++|.|||.||+.+++.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 4678888888888775532 110 01234578999999999999999999984
No 55
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.33 E-value=0.00082 Score=55.08 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=32.9
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.++|++..++++.+.+..-. ....-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 357899988888888775311 11234779999999999999999874
No 56
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.24 E-value=0.0029 Score=58.78 Aligned_cols=51 Identities=25% Similarity=0.197 Sum_probs=37.4
Q ss_pred CceeeecchHHHHHHHHhcCC--C-----CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDD--L-----RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~--~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|.+..++.|.+++...- + -.-.....|.|+|++|+|||+||+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 468999988888887764210 0 00123467899999999999999999984
No 57
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.24 E-value=0.0022 Score=53.86 Aligned_cols=20 Identities=50% Similarity=0.760 Sum_probs=18.8
Q ss_pred eEEEEEccCCccHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLV 207 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v 207 (423)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37999999999999999999
No 58
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.22 E-value=0.0039 Score=54.43 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.++|.+.+... ...-.+|+|+|+.|+|||||++.+..
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432 23457999999999999999999876
No 59
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.21 E-value=0.0014 Score=61.94 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=83.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhcc----cc-cc-C-------------c--c
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDV----RV-HN-H-------------F--D 218 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~----~~-~~-~-------------F--~ 218 (423)
..++|.+..++.+...+..... .......+.++|++|+||||||+.+.+.. .. .. . + .
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~ 103 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG 103 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTT
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCC
Confidence 4578887777777666543100 01234679999999999999999998743 10 00 0 0 1
Q ss_pred ceeeEEeCCcCcHHHHHHHHHHHhhcCCCC-------CcC----CCCceee-EeccCCHHHHhhcCC--CCcccCCCCCh
Q 042891 219 LKSWTCVSEDFDIIWVTKSILKSIASDQLV-------DDR----DLNLLQI-VITTRNLCVVEKTGT--LPAYPLKELSN 284 (423)
Q Consensus 219 ~~~wv~vs~~~~~~~~~~~il~~l~~~~~~-------~~~----~~~~l~i-lvTTR~~~v~~~~~~--~~~~~l~~L~~ 284 (423)
.++++.--+.+.. .....++..+.....+ ... .+..+.+ -.|++...+...+.. .....+++.+.
T Consensus 104 ~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~ 182 (334)
T 1in4_A 104 DVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTV 182 (334)
T ss_dssp CEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred CEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCH
Confidence 1233332222221 1222222211111000 000 1111222 234443322111111 12478999999
Q ss_pred hhHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCchhhhHhh
Q 042891 285 NDCLSVFTQHSLGEKDFSTHPSLKEIGEKIVKKCNGLPLVAKSL 328 (423)
Q Consensus 285 ~~~~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~c~GlPlai~~~ 328 (423)
++-.+++.+.+-.... .-..+.+..|++.+.|.|-.+..+
T Consensus 183 ~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 183 KELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp HHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 9999999887632111 112466889999999999655433
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.17 E-value=0.0023 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-..+.|+|++|+||||||+.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999984
No 61
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.15 E-value=0.0036 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999998876
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.11 E-value=0.003 Score=66.58 Aligned_cols=45 Identities=31% Similarity=0.435 Sum_probs=37.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.+++.+...|.... ..-+.++|++|+|||++|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999996532 234789999999999999999874
No 63
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.10 E-value=0.003 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 64
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.08 E-value=0.006 Score=56.25 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555554332 234567899999999999999999976
No 65
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.07 E-value=0.0037 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999874
No 66
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.05 E-value=0.0032 Score=53.21 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|+|++|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999873
No 67
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.04 E-value=0.0036 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.02 E-value=0.0027 Score=67.85 Aligned_cols=45 Identities=29% Similarity=0.446 Sum_probs=37.6
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.+++.+++.|... ...-+.++|++|+||||||+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999643 2234689999999999999999874
No 69
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.02 E-value=0.0056 Score=57.28 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=38.9
Q ss_pred CCceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+.+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3578999999999999997432 3457888899999999999999884
No 70
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.00 E-value=0.0035 Score=53.37 Aligned_cols=22 Identities=14% Similarity=0.502 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 71
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.00 E-value=0.0032 Score=58.29 Aligned_cols=51 Identities=25% Similarity=0.327 Sum_probs=37.0
Q ss_pred CceeeecchHHHHHHHHhcC--C--C----CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSD--D--L----RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~--~--~----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.+...+... . . ........+.++|++|+|||+||+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988877541 0 0 00012346789999999999999999874
No 72
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.00 E-value=0.0038 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 73
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.98 E-value=0.0043 Score=56.35 Aligned_cols=52 Identities=27% Similarity=0.281 Sum_probs=35.6
Q ss_pred CCceeeecchHHHHHHHHhcCCCC------CCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLR------TDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++.+.+.+..-... .....+-+.|+|++|+|||+||+.+++.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 346899998888887765310000 0011234779999999999999999884
No 74
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.97 E-value=0.004 Score=56.48 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=33.3
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..+..+.+.+..-. .....|.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 357899988888887665321 12245779999999999999999874
No 75
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.97 E-value=0.005 Score=64.86 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=37.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++||+.+++.+++.|... ...-+.++|.+|+|||++|+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999542 3345689999999999999999874
No 76
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.97 E-value=0.0032 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 77
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.95 E-value=0.0065 Score=54.84 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+.+...+..... ......+|.|+|++|+||||+|+.+...
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34555555554432 3345679999999999999999999773
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.91 E-value=0.025 Score=59.37 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=37.8
Q ss_pred CceeeecchHHHHHHHHh----cCCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLL----SDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|.+..+++|.+++. .++. -+-..++-|.++|++|+|||+||+.+++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 467889988888877652 2211 02234678999999999999999999984
No 79
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.90 E-value=0.0061 Score=56.55 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=36.6
Q ss_pred ceeeecchHHHHHHHHhcCC---CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLSDD---LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 46788888888877775421 001223458999999999999999999873
No 80
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.90 E-value=0.0052 Score=53.23 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-.+|.|+|+.|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999874
No 81
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.89 E-value=0.006 Score=57.03 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=31.1
Q ss_pred eecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 164 GRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 164 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
|-...+..+...++... ......+|+|.|+.|+|||||++.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33344555555555433 245677999999999999999999865
No 82
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.86 E-value=0.0064 Score=51.26 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.-.+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 83
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.0046 Score=58.62 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=34.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|.+...+.+.+++.... ....+.|+|+.|+||||||+.+.+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCeEEEECCCCCCHHHHHHHHHH
Confidence 458899988888888772211 222389999999999999998877
No 84
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.85 E-value=0.0056 Score=55.22 Aligned_cols=52 Identities=31% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCceeeecchHHHHHHHH---hcCCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELL---LSDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++.+.+.+ ..... -+....+-+.|+|++|+||||||+.+.+.
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 346889888777776543 22110 00112345889999999999999999874
No 85
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.82 E-value=0.0047 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 86
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.78 E-value=0.0052 Score=57.77 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=35.3
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..++|++..++.+...+... .-+.++|++|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 35889999898888888653 2588999999999999999987
No 87
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.76 E-value=0.0056 Score=53.35 Aligned_cols=24 Identities=46% Similarity=0.364 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999877
No 88
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.75 E-value=0.0051 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 89
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.75 E-value=0.0056 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|+.|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3469999999999999999999863
No 90
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.74 E-value=0.0071 Score=52.56 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|+.|+||||||+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 91
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.73 E-value=0.0044 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|+.|+||||||+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 92
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.73 E-value=0.0056 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 93
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.71 E-value=0.0064 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 94
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.70 E-value=0.0065 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 95
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.68 E-value=0.0052 Score=51.83 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 36899999999999999998654
No 96
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.66 E-value=0.0063 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 97
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.65 E-value=0.0067 Score=52.93 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 98
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.64 E-value=0.0066 Score=56.47 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=36.2
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|+...+.++.+.+..-. .....|.|+|.+|+|||++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 357899999999888775421 12345779999999999999999873
No 99
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.64 E-value=0.0071 Score=59.65 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCceeeecchHHHHHHH---HhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVEL---LLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~---L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...++|.+..++.+..+ +.... ...+-+.++|++|+|||+||+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 35799999887765444 33221 23356889999999999999999984
No 100
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.62 E-value=0.0063 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999873
No 101
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.62 E-value=0.0082 Score=51.92 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|.|+.|+||||+|+.+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999863
No 102
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.61 E-value=0.0071 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+|+|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999873
No 103
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.60 E-value=0.0063 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 104
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.60 E-value=0.0055 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999986
No 105
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.59 E-value=0.0061 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|+|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999999863
No 106
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.56 E-value=0.0066 Score=53.51 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999976
No 107
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.55 E-value=0.0062 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999873
No 108
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.55 E-value=0.008 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568889999999999999999884
No 109
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.54 E-value=0.013 Score=51.14 Aligned_cols=44 Identities=18% Similarity=0.040 Sum_probs=32.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVT 235 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 235 (423)
-.++.|+|.+|+|||||+..+.. . .-..++|++....++...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence 35999999999999999999987 1 12457788776655554443
No 110
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.54 E-value=0.0067 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999976
No 111
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.54 E-value=0.0071 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999763
No 112
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0077 Score=51.47 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 113
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.53 E-value=0.0098 Score=56.68 Aligned_cols=50 Identities=30% Similarity=0.321 Sum_probs=35.6
Q ss_pred ceeeecchHHHHHHHHhc-------CC--CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLS-------DD--LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~-------~~--~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|.+..++.+...+.. .. .........|.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 468888888888877721 00 001123457899999999999999999873
No 114
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.51 E-value=0.0073 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 115
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.51 E-value=0.0073 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999987
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.50 E-value=0.0054 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=22.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
-..+.|+|+.|+|||||++.+++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998843
No 117
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.50 E-value=0.0081 Score=59.75 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=35.1
Q ss_pred ceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 161 KVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 161 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|.+..++.+...+..+ .-|.++|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4788888888888877653 26889999999999999999874
No 118
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.49 E-value=0.0079 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 119
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.49 E-value=0.0064 Score=51.30 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 120
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.48 E-value=0.0081 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998873
No 121
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.47 E-value=0.0095 Score=50.80 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999873
No 122
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.47 E-value=0.0088 Score=51.25 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999976
No 123
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.45 E-value=0.0063 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.1
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999977
No 124
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.44 E-value=0.0084 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.43 E-value=0.022 Score=50.52 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=36.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcccccc----CccceeeEEeCCcCcHHHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHN----HFDLKSWTCVSEDFDIIWVTKSILKSI 242 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l 242 (423)
-.++.|+|++|+|||||+..+........ .-..++|++....++...+. .++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 82 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERY 82 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHc
Confidence 35999999999999999999887422211 12467888877655554432 344444
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.42 E-value=0.0068 Score=52.47 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 127
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.41 E-value=0.009 Score=53.79 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 128
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.40 E-value=0.013 Score=55.17 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=29.3
Q ss_pred cchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 166 DKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 166 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.-.+.+++.+...- ..+....|.|+|++|+||||+++.+..
T Consensus 5 ~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 5 HKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 444555666553211 123456799999999999999998877
No 129
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.38 E-value=0.012 Score=50.13 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|.|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 130
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.37 E-value=0.0087 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999985
No 131
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.37 E-value=0.0092 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|.|.|++|+||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 132
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.31 E-value=0.01 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|+|+.|+|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 457999999999999999999876
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.30 E-value=0.0081 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999873
No 134
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.30 E-value=0.0089 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|+|.|++|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 135
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.29 E-value=0.012 Score=50.94 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|.|++|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999873
No 136
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.29 E-value=0.01 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 137
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.28 E-value=0.013 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 138
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.27 E-value=0.011 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|+|++|+|||||++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999999886
No 139
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.25 E-value=0.01 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 140
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.24 E-value=0.01 Score=51.44 Aligned_cols=23 Identities=30% Similarity=0.461 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 141
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.22 E-value=0.014 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+||.|.|++|+||||+|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 142
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.22 E-value=0.011 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.|.|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 143
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.21 E-value=0.01 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5999999999999999999986
No 144
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.21 E-value=0.012 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 145
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.19 E-value=0.012 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 146
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.19 E-value=0.011 Score=55.12 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=20.9
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++.+||+|.|-|||||||.+..+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4678999999999999998876654
No 147
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.19 E-value=0.011 Score=50.59 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.2
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 148
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.17 E-value=0.025 Score=48.35 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 149
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.15 E-value=0.011 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.603 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999999986
No 150
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.11 E-value=0.0086 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=17.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999763
No 151
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.10 E-value=0.0098 Score=52.35 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 152
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.06 E-value=0.025 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|+|+.|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999887
No 153
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.04 E-value=0.012 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+|+|+|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999999986
No 154
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.04 E-value=0.0076 Score=52.51 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998763
No 155
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.02 E-value=0.014 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 156
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.01 E-value=0.013 Score=58.26 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=37.6
Q ss_pred CceeeecchHHHHHHHHhcC--CC-----CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSD--DL-----RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~--~~-----~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..+++|.+++... .+ -+.....-|.|+|++|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999998877431 00 00123456899999999999999999874
No 157
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.00 E-value=0.03 Score=52.10 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=34.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEe--CCc-----CcHHHHHHHHHHHhh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCV--SED-----FDIIWVTKSILKSIA 243 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~-----~~~~~~~~~il~~l~ 243 (423)
-+++.|+|++|+|||+||.++... .-..++|++. ... .+...++..+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh
Confidence 357789999999999999999874 1223566666 211 345566655555553
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.98 E-value=0.015 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+|+|.|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999977
No 159
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.98 E-value=0.0092 Score=56.30 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=32.7
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.+...+.... ..-|.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458998876665544443221 223889999999999999999874
No 160
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.96 E-value=0.015 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 161
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.96 E-value=0.015 Score=48.35 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+++|+|+.|.|||||.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999999987
No 162
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.94 E-value=0.015 Score=50.97 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998874
No 163
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.88 E-value=0.016 Score=53.06 Aligned_cols=24 Identities=42% Similarity=0.706 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999973
No 164
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.86 E-value=0.013 Score=53.53 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.8
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.++|++|+||||||+.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999884
No 165
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.86 E-value=0.014 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 166
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.85 E-value=0.011 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998763
No 167
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.84 E-value=0.015 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999873
No 168
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.84 E-value=0.015 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.82 E-value=0.015 Score=51.08 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=30.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcccccc----CccceeeEEeCCcCcH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHN----HFDLKSWTCVSEDFDI 231 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~ 231 (423)
-.+++|+|+.|+|||||++.+........ .-...+|+.-...+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 36999999999999999999976321111 1234677765544443
No 170
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.80 E-value=0.019 Score=50.27 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999965
No 171
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.79 E-value=0.014 Score=52.47 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.|+|++|+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999874
No 172
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.78 E-value=0.015 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999999998873
No 173
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.77 E-value=0.015 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 174
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.77 E-value=0.014 Score=50.05 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEEccCCccHHHHHHHHHhcc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
+++|+|+.|+|||||.+.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 78999999999999999998743
No 175
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.75 E-value=0.019 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|.|+.|+||||+++.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.75 E-value=0.016 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 177
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.72 E-value=0.017 Score=50.51 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.71 E-value=0.027 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+|.|.|++|+||||+|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 179
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.68 E-value=0.03 Score=48.49 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+..+..++..- +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55666666421 12347999999999999998888764
No 180
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.66 E-value=0.021 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 181
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.65 E-value=0.028 Score=47.75 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.....|.|+|.+|+|||||...+.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999874
No 182
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.64 E-value=0.018 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7999999999999999999987
No 183
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.62 E-value=0.016 Score=50.62 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|.+|+|||||+..+...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998774
No 184
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.62 E-value=0.02 Score=53.02 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+++|+|+.|+|||||++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998873
No 185
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.60 E-value=0.016 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 186
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.60 E-value=0.012 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=16.0
Q ss_pred eEEEEEccCCccHHHHHHHHH-h
Q 042891 188 SVIPIIGMGGIGKTTLAQLVY-N 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~-~ 209 (423)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.59 E-value=0.048 Score=51.03 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=39.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccC----ccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNH----FDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
-.++.|+|.+|+||||||.++......... -..++|++....++..++.. ++..++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 359999999999999999998864322211 24678999888777766543 344443
No 188
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.58 E-value=0.02 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+++|++|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998763
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.57 E-value=0.061 Score=50.75 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=39.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcccccc----CccceeeEEeCCcCcHHHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHN----HFDLKSWTCVSEDFDIIWVTKSILKSI 242 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l 242 (423)
.-.++.|+|.+|+||||||.++........ .-..++|++....++...+.. ++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 346999999999999999999887432211 124678999888777765543 34444
No 190
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.56 E-value=0.034 Score=58.82 Aligned_cols=51 Identities=27% Similarity=0.234 Sum_probs=38.0
Q ss_pred CceeeecchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLS----DDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|.+..+++|.+++.. ++. -.-.....|.|+|++|+||||||+.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5689999999998887743 100 01123457999999999999999999873
No 191
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.55 E-value=0.019 Score=49.55 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999977
No 192
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.52 E-value=0.051 Score=50.74 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=40.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcccccc---------Cc-----cceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHN---------HF-----DLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
.-.++.|+|.+|+|||+||.++..+..... .. ..++|++....++..++.. ++..++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 346999999999999999999876432211 11 4678999888877766653 344443
No 193
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.51 E-value=0.024 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.345 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|+.|+||||+++.+..-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998863
No 194
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.49 E-value=0.022 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+++|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3579999999999999999998863
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.48 E-value=0.016 Score=58.45 Aligned_cols=51 Identities=27% Similarity=0.359 Sum_probs=35.4
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|.+..+..+.+.+.-..........++.++|++|+||||||+.+.+.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 457888877777755443211001124568999999999999999999873
No 196
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.44 E-value=0.019 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999986
No 197
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.44 E-value=0.022 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998873
No 198
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.43 E-value=0.018 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 199
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.41 E-value=0.013 Score=53.95 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=18.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+..+|+|.|+.|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.40 E-value=0.047 Score=51.73 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=32.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDII 232 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 232 (423)
-.++.|+|++|+||||||.++..... ..=..++|++....++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH
Confidence 46999999999999999999887432 222346788777666543
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.38 E-value=0.027 Score=52.26 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|++|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4579999999999999999998873
No 202
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.38 E-value=0.02 Score=52.30 Aligned_cols=52 Identities=27% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCceeeecchHHHHHHHHhcCCC------CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDL------RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..+.++.+....-.. -+-.-.+-+.|+|++|+|||||++.+.+.
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 34678887776666554321000 00001122899999999999999999874
No 203
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.38 E-value=0.019 Score=50.72 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 204
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.37 E-value=0.028 Score=53.70 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+.++|++|+|||+||+.+.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999873
No 205
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.35 E-value=0.023 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|+|.|++|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999863
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.33 E-value=0.061 Score=50.07 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=36.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKS 241 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 241 (423)
-.++.|.|.+|+||||||.++..+....+ ..++|++... +..++...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHHHH
Confidence 35899999999999999999876432222 5677777653 455566665554
No 207
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.31 E-value=0.019 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|.|||||.+.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999998863
No 208
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.29 E-value=0.051 Score=52.99 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCC---CCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 169 KEETVELLLSDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 169 ~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.++|.++|..... ......++|.++|.+|+||||++..+..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556666643211 0123578999999999999999988875
No 209
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.28 E-value=0.052 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999888875
No 210
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.26 E-value=0.024 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 211
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.25 E-value=0.025 Score=49.86 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999773
No 212
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.25 E-value=0.056 Score=51.13 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=32.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCc----cceeeEEeCCcCcHH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHF----DLKSWTCVSEDFDII 232 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~ 232 (423)
.-.++.|+|+.|+|||||+..+.......... ..++|++....+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 34699999999999999999988743111111 234888876655433
No 213
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.22 E-value=0.022 Score=50.81 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 214
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.20 E-value=0.028 Score=53.34 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|+.|+|||||++.+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4579999999999999999998873
No 215
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.18 E-value=0.041 Score=53.63 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=35.9
Q ss_pred CceeeecchHHHHHHHHhcC--------CCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSD--------DLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|-+..++.|...+... ........+-|.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46788888888887666321 1001113456899999999999999999883
No 216
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.15 E-value=0.075 Score=51.22 Aligned_cols=56 Identities=14% Similarity=0.097 Sum_probs=36.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcccccc----CccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHN----HFDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
-.++.|+|++|+|||||+..++-...... .-..++|++....++...+ ..+.+.++
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 35999999999999999997753211111 2245788887776665544 33555554
No 217
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.14 E-value=0.023 Score=51.89 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999986
No 218
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.13 E-value=0.035 Score=54.80 Aligned_cols=52 Identities=27% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCceeeecchHHHHHHHHhc---CC---CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLS---DD---LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~---~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..++++.+.+.. .. .-+....+-|.|+|++|+|||+||+.+.+.
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34689998877777665421 10 001112234889999999999999999884
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.13 E-value=0.051 Score=48.11 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-.+|.|.|+.|+||||+++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999884
No 220
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.13 E-value=0.023 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 221
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.13 E-value=0.027 Score=48.14 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 222
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.12 E-value=0.026 Score=49.51 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=26.5
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE 227 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 227 (423)
.+++|+|++|+|||||++.+..... ..=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc
Confidence 5899999999999999999885322 1112455655433
No 223
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.08 E-value=0.028 Score=49.73 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-.+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34579999999999999999998873
No 224
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.07 E-value=0.039 Score=52.21 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=32.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDI 231 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 231 (423)
-.++.|+|.+|+||||||.++..... ..=..++|++....++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDP 103 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCH
Confidence 45899999999999999999876432 22245788888776664
No 225
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.07 E-value=0.027 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.06 E-value=0.055 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|.++|++|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 227
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.05 E-value=0.032 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|.|.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999873
No 228
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.04 E-value=0.025 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 229
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.01 E-value=0.027 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 230
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.01 E-value=0.043 Score=52.09 Aligned_cols=44 Identities=23% Similarity=0.211 Sum_probs=33.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDII 232 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 232 (423)
-.++.|.|.+|+||||||.++..... ..=..++|++....++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHH
Confidence 45899999999999999999876432 222367888887776643
No 231
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.00 E-value=0.033 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999986
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.00 E-value=0.051 Score=51.57 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHh
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+.+.+... ..+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44455555432 23678999999999999999988865
No 233
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.99 E-value=0.026 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 234
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.99 E-value=0.026 Score=51.31 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999987
No 235
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.99 E-value=0.026 Score=51.01 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 236
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.99 E-value=0.031 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 237
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.97 E-value=0.03 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 238
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.96 E-value=0.036 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-|.|+|.+|+|||||...+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 239
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.95 E-value=0.044 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 240
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.95 E-value=0.023 Score=49.76 Aligned_cols=22 Identities=41% Similarity=0.606 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 241
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.95 E-value=0.036 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|.|+|+.|+||||||..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 242
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.95 E-value=0.039 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|+|+.|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999873
No 243
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.94 E-value=0.027 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999987
No 244
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.93 E-value=0.03 Score=50.91 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999988
No 245
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.92 E-value=0.05 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....++.+.|.||+|||||+..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3567899999999999999999875
No 246
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.91 E-value=0.027 Score=50.51 Aligned_cols=22 Identities=45% Similarity=0.739 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 247
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.91 E-value=0.034 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=21.4
Q ss_pred CCCceEEEEEccCCccHHHHHHHHHh
Q 042891 184 DDGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 184 ~~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....++|+|+|-||+||||+|..+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 34678999999999999999988766
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.89 E-value=0.035 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|+|+|.+|+|||||...+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.89 E-value=0.026 Score=47.75 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|+|+|.+|+|||||...+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 250
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.88 E-value=0.033 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|.|+|+.|+||||||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.87 E-value=0.03 Score=52.01 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=28.2
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+.+.+++..... .....+.|+|++|+|||+||..+++.
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455556643221 12467889999999999999999984
No 252
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.87 E-value=0.04 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|.+|+||||++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988763
No 253
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.86 E-value=0.038 Score=56.51 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=35.6
Q ss_pred CceeeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.+...+... ..+.|+|++|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46889888888877777532 47899999999999999999873
No 254
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.86 E-value=0.034 Score=54.04 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....+|.|+|++|+||||+|+.+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999873
No 255
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.84 E-value=0.031 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 256
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.81 E-value=0.029 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 257
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.81 E-value=0.032 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+++|+|+.|.|||||++.+..
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 35999999999999999999875
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.81 E-value=0.029 Score=51.10 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 259
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.80 E-value=0.043 Score=48.66 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=27.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCC
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSE 227 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 227 (423)
.++.|.|++|+||||||.++.... ...=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 589999999999999998876532 12223567777554
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.80 E-value=0.035 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 36999999999999999999876
No 261
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.79 E-value=0.03 Score=50.71 Aligned_cols=22 Identities=36% Similarity=0.757 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 262
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.78 E-value=0.031 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.++.|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5999999999999999999876
No 263
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.74 E-value=0.039 Score=54.45 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|..|+|||||++.+..-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4579999999999999999998873
No 264
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.69 E-value=0.032 Score=50.15 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 265
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.66 E-value=0.032 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 266
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.66 E-value=0.034 Score=51.21 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=32.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKS 241 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~ 241 (423)
.+++|+|++|+|||||++.+........ =..++|++... +...+...++..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 5999999999999999999887432221 11455665433 334444444433
No 267
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.63 E-value=0.033 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 268
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.63 E-value=0.066 Score=56.29 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=38.3
Q ss_pred CceeeecchHHHHHHHHhcCCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999988888887764221 01223447999999999999999999874
No 269
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.61 E-value=0.033 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 270
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.57 E-value=0.038 Score=45.20 Aligned_cols=22 Identities=27% Similarity=0.678 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
No 271
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.56 E-value=0.12 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.0
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|.|-|+.|+||||+++.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 272
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.54 E-value=0.067 Score=44.53 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+...|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 273
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.52 E-value=0.038 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999886
No 274
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.52 E-value=0.077 Score=52.67 Aligned_cols=52 Identities=27% Similarity=0.304 Sum_probs=34.3
Q ss_pred CCceeeecchHHHHHHHHh---cCCC---CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLL---SDDL---RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|.+..+.++.+... .... -+-.-.+-|.|+|++|+||||||+.+++.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568898877776665442 2110 00011234899999999999999999873
No 275
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.49 E-value=0.05 Score=44.75 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446899999999999999999874
No 276
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.48 E-value=0.047 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 277
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.41 E-value=0.053 Score=44.99 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 457899999999999999998764
No 278
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.41 E-value=0.089 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999988874
No 279
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.39 E-value=0.045 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.-.+++|+|+.|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999999987
No 280
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.35 E-value=0.048 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|+|+|.+|+||||++..++.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999998873
No 281
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.31 E-value=0.045 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|.|+|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 282
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.29 E-value=0.033 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.723 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 5899999999999999999976
No 283
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.25 E-value=0.06 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568899999999999999999874
No 284
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.24 E-value=0.056 Score=46.96 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.....|.|+|.+|+|||||...+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999875
No 285
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.23 E-value=0.049 Score=44.69 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999875
No 286
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.17 E-value=0.065 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999998875
No 287
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.14 E-value=0.044 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 288
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.11 E-value=0.056 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|.|.|+.|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 289
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.08 E-value=0.1 Score=48.38 Aligned_cols=44 Identities=5% Similarity=-0.113 Sum_probs=31.6
Q ss_pred EEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHH
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDII 232 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 232 (423)
++-|.|++|+|||||+.++.........=..++|++....++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH
Confidence 78999999999999998887643211112457888877777653
No 290
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.07 E-value=0.052 Score=44.55 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 291
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.04 E-value=0.054 Score=44.56 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEEccCCccHHHHHHHHHhcc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
-|.|+|.+|+|||||...+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988653
No 292
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.01 E-value=0.054 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|.|+|.+|+|||||...+.++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 293
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.00 E-value=0.057 Score=46.47 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 294
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.00 E-value=0.054 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|+|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999998764
No 295
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.99 E-value=0.053 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999874
No 296
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.98 E-value=0.052 Score=45.42 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 297
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.96 E-value=0.052 Score=45.76 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.++
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998875
No 298
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.96 E-value=0.07 Score=45.09 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4457899999999999999999875
No 299
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.94 E-value=0.14 Score=44.96 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|.|+.|+||||+++.+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 300
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.90 E-value=0.076 Score=50.54 Aligned_cols=44 Identities=20% Similarity=0.168 Sum_probs=32.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDII 232 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 232 (423)
-.++.|.|.+|+||||||.++..... ..-..++|++....++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH
Confidence 35889999999999999998876432 222468888887766643
No 301
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.88 E-value=0.057 Score=45.72 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999888764
No 302
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.86 E-value=0.14 Score=45.54 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=32.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSIL 239 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 239 (423)
-..|.|.|+.|+||||+++.+..... ...+..+....-.......+.+++++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 35899999999999999999987432 23455344443322222334444444
No 303
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.83 E-value=0.14 Score=46.90 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++.+.|.............|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 344555554432212345678999999999999999999874
No 304
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.82 E-value=0.07 Score=44.46 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998874
No 305
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.80 E-value=0.053 Score=50.57 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 306
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.80 E-value=0.069 Score=44.02 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
--|.|+|.+|+|||||...+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999865
No 307
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.80 E-value=0.05 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.79 E-value=0.12 Score=46.55 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-+..||.... +....|.++|++|.|||.||..+.+.
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344666664321 23457999999999999999999873
No 309
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.78 E-value=0.083 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999875
No 310
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.75 E-value=0.061 Score=44.73 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 311
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.74 E-value=0.057 Score=51.16 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999986
No 312
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.73 E-value=0.1 Score=45.99 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=18.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-..|.|-|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 313
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.73 E-value=0.061 Score=44.08 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|.+|+|||||...+.++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
No 314
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.71 E-value=0.067 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|.|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999876
No 315
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.70 E-value=0.062 Score=45.56 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3457899999999999999998875
No 316
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.68 E-value=0.061 Score=44.26 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|.|+|.+|+|||||...+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 317
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.68 E-value=0.06 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 5899999999999999999976
No 318
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.67 E-value=0.064 Score=44.09 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 319
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.62 E-value=0.058 Score=44.34 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=19.0
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-|.|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 579999999999999998865
No 320
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.59 E-value=0.055 Score=45.17 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998874
No 321
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.57 E-value=0.075 Score=50.27 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999876
No 322
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.57 E-value=0.07 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 323
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.57 E-value=0.068 Score=44.43 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
...-|.|+|.+|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998753
No 324
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.56 E-value=0.062 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|.+|+|||||...+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998874
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.55 E-value=0.065 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...++|+|..|.|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 326
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.54 E-value=0.067 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhcc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
--|.|+|.+|+|||||...+.++.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 327
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.53 E-value=0.068 Score=48.25 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999988876
No 328
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.52 E-value=0.065 Score=45.57 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|+|+|.+|+|||||...+.++
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998874
No 329
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.51 E-value=0.1 Score=43.30 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456899999999999999998864
No 330
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.50 E-value=0.056 Score=45.07 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|+|+|.+|+|||||...+.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 331
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.48 E-value=0.066 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 332
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.47 E-value=0.067 Score=45.30 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=19.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999977665
No 333
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.46 E-value=0.12 Score=43.34 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999999875
No 334
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.43 E-value=0.07 Score=44.69 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|+|+|.+|+|||||...+.++
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 335
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.42 E-value=0.11 Score=48.08 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=26.4
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHH
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVY 208 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~ 208 (423)
.+++|.+.+. -.+++++|+.|+|||||.+.+.
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 3677777663 2489999999999999999998
No 336
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.42 E-value=0.069 Score=44.87 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998864
No 337
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.41 E-value=0.063 Score=46.81 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 338
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.40 E-value=0.047 Score=49.29 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+...|.|.|+.|+||||+|+.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999998873
No 339
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.36 E-value=0.082 Score=44.18 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|+|+|.+|+|||||...+.++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999864
No 340
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.35 E-value=0.072 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|.|+|..|+|||||...+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 341
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.32 E-value=0.18 Score=43.34 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.|+|=|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788899999999999999874
No 342
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.32 E-value=0.075 Score=44.50 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=21.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
..-|.|+|.+|+|||||...+.++.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4578999999999999999998753
No 343
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.32 E-value=0.18 Score=44.04 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=32.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILK 240 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~ 240 (423)
..|.+-|+.|+||||+++.+.+... ...+..++...-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 4799999999999999999987432 223433333332222234455555554
No 344
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.32 E-value=0.086 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999874
No 345
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.31 E-value=0.071 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999976
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.31 E-value=0.071 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4899999999999999999976
No 347
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.31 E-value=0.099 Score=43.06 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|.|+|.+|+|||||...+.++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999764
No 348
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.30 E-value=0.076 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=19.3
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+.+|+|+.|.|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999864
No 349
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.30 E-value=0.075 Score=44.33 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-|.|+|.+|+|||||...+.++
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998875
No 350
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.29 E-value=0.075 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.29 E-value=0.075 Score=45.07 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|+|+|.+|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999998874
No 352
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.28 E-value=0.076 Score=44.35 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998874
No 353
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.27 E-value=0.064 Score=49.52 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|+++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999988763
No 354
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.23 E-value=0.075 Score=45.16 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCccHHHHHHHHHhcc
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.....|.|+|.+|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999988743
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.23 E-value=0.074 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999976
No 356
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=92.22 E-value=0.084 Score=48.31 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
++|+|.|-||+||||+|..+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHH
Confidence 6888899999999999988876
No 357
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.21 E-value=0.078 Score=45.44 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+|+|.+|+|||||...+.++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998763
No 358
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.18 E-value=0.11 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCccHHHHHHHHHh
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....+|+|+||+|+||+|+|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3557999999999999999988865
No 359
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.17 E-value=0.065 Score=50.58 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999986
No 360
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.17 E-value=0.1 Score=44.55 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4457899999999999999998764
No 361
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.17 E-value=0.078 Score=45.16 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.++
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998874
No 362
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.17 E-value=0.076 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-.++|.|++|+||||+|+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999773
No 363
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.13 E-value=0.077 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4899999999999999999976
No 364
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.10 E-value=0.09 Score=55.22 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=37.0
Q ss_pred CceeeecchHHHHHHHHhcCC--C-CCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDD--L-RTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~--~-~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.+...+.... . ..+.....+.++|++|+|||+||+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 457898888888877765311 0 01233457999999999999999999873
No 365
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.09 E-value=0.081 Score=45.32 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
....|+|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45678999999999999999988753
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.084 Score=43.98 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
..--|.|+|.+|+|||||...+.+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999988743
No 367
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.08 E-value=0.087 Score=56.16 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=37.8
Q ss_pred CceeeecchHHHHHHHHhcCC---CCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDD---LRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..++|.+..++.+...+.... ...+.....+.|+|++|+|||+||+.+.+.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999998888888775321 001223468999999999999999998873
No 368
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.07 E-value=0.079 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999976
No 369
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.081 Score=44.94 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.--|+|+|.+|+|||||...+.++.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 370
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.05 E-value=0.11 Score=44.08 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
...-|.|+|..|+|||||...+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34578999999999999999998753
No 371
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.05 E-value=0.067 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.7
Q ss_pred EEEEEccCCccHHHHHHHHHh
Q 042891 189 VIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-|+|+|..|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999775
No 372
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.05 E-value=0.081 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.--|.|+|.+|+|||||...+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999998875
No 373
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.03 E-value=0.08 Score=45.73 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.++
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999875
No 374
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.00 E-value=0.061 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 375
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.00 E-value=0.094 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+|.++|++|.||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 376
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.00 E-value=0.1 Score=45.81 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|+|.+|+|||||...+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998774
No 377
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.99 E-value=0.048 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999888753
No 378
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.98 E-value=0.09 Score=45.44 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=21.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
....|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998753
No 379
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.96 E-value=0.078 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=20.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
....|.|+|.+|+|||||...+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999998854
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.94 E-value=0.086 Score=45.08 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-|.|+|.+|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998875
No 381
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.94 E-value=0.096 Score=45.09 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|+|+|.+|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998764
No 382
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.89 E-value=0.087 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=19.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.|.+.|.||+||||+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 35788899999999999888774
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.88 E-value=0.091 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+++|+|+.|+|||||.+.+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998876
No 384
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.88 E-value=0.086 Score=45.15 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
...-|+|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34578999999999999999998753
No 385
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.84 E-value=0.09 Score=44.63 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.--|.|+|.+|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 386
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.84 E-value=0.091 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 387
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.84 E-value=0.084 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=19.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...-|.|+|.+|+|||||.+.+.+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999987766
No 388
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.83 E-value=0.1 Score=49.21 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
+..+|+|+|.+|+|||||+..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999998864
No 389
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.83 E-value=0.091 Score=44.39 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.7
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
..-|.|+|.+|+|||||...+.++.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4578999999999999999988753
No 390
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.79 E-value=0.096 Score=48.57 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 184 DDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 184 ~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
......|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345679999999999999999998864
No 391
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.76 E-value=0.094 Score=44.44 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998874
No 392
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.76 E-value=0.091 Score=44.72 Aligned_cols=23 Identities=26% Similarity=0.017 Sum_probs=19.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++.|+|+.|+||||++..+.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999766653
No 393
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.74 E-value=0.089 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.++
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 456899999999999999998874
No 394
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.71 E-value=0.09 Score=44.88 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998874
No 395
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.70 E-value=0.09 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||.+.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 59999999999999999999884
No 396
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.67 E-value=0.14 Score=43.42 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
..--|+|+|.+|+|||||...+.+..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999998753
No 397
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.66 E-value=0.098 Score=44.20 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.++
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 398
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.65 E-value=0.079 Score=50.35 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 399
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.65 E-value=0.11 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|+|+|++|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999988763
No 400
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.63 E-value=0.1 Score=48.15 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999864
No 401
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.63 E-value=0.098 Score=44.20 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-|.|+|.+|+|||||...+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999999875
No 402
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.58 E-value=0.11 Score=45.91 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45689999999999999999998743
No 403
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.57 E-value=0.15 Score=47.04 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=27.6
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 168 EKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 168 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++++..++. -.+++|+|+.|+|||||.+.+...
T Consensus 159 gv~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLK---------GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhccc
Confidence 3677777773 248999999999999999999863
No 404
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.56 E-value=0.092 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999998764
No 405
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.49 E-value=0.096 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999986
No 406
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.49 E-value=0.14 Score=43.49 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|+|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999998764
No 407
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.47 E-value=0.11 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.2
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|+|+.|+|||||.+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4999999999999999998876
No 408
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.47 E-value=0.086 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+|.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 368999999999999999999873
No 409
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.45 E-value=0.12 Score=43.36 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
...-|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 410
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.42 E-value=0.1 Score=44.77 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
...-|.|+|.+|+|||||...+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999988743
No 411
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.39 E-value=0.34 Score=41.88 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|+|=|..|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999884
No 412
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.39 E-value=0.097 Score=43.90 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 413
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.38 E-value=0.13 Score=43.93 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999998864
No 414
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.38 E-value=0.098 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.5
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 357899999999999999998864
No 415
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.38 E-value=0.12 Score=46.78 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998864
No 416
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.11 Score=44.13 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-|.|+|.+|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
No 417
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.33 E-value=0.12 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+|+|.|+.|+||||+|+.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 59999999999999999999883
No 418
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.31 E-value=0.11 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-|.|+|.+|+|||||...+.++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998874
No 419
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.29 E-value=0.095 Score=45.58 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
....|+|+|..|+|||||...+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998753
No 420
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=91.27 E-value=0.13 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-.|.|+|.+|+|||||...+.++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999988864
No 421
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.26 E-value=0.15 Score=42.93 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|.|+|.+|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999864
No 422
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.26 E-value=0.089 Score=44.70 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=20.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|..|+|||||...+.++
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998764
No 423
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.23 E-value=0.091 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999999873
No 424
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.21 E-value=0.22 Score=45.99 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 169 KEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 169 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.++|.+.+..-+. .......|+|+|..|+|||||...+...
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 7 INKLQDVFNTLGS-DPLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp HHHHHHHTTTSSS-CTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC-CCCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 3444554432222 1345778999999999999999999764
No 425
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.20 E-value=0.17 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+.|.|.+|.||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999999888764
No 426
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.18 E-value=0.11 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3457899999999999999998764
No 427
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.18 E-value=0.12 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEEccCCccHHHHHHHHHhc
Q 042891 189 VIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 5789999999999999998764
No 428
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.17 E-value=0.12 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.++|++|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998764
No 429
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.15 E-value=0.091 Score=43.94 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999888753
No 430
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.15 E-value=0.098 Score=50.67 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.5
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
++|+|+.|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999763
No 431
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.11 E-value=0.12 Score=44.50 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.2
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|+|+|.+|+|||||...+.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999998864
No 432
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.09 E-value=0.11 Score=44.67 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.4
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998864
No 433
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.09 E-value=0.21 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+|+|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999999876
No 434
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.07 E-value=0.12 Score=44.33 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.-|+|+|.+|+|||||...+.++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998874
No 435
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.07 E-value=0.14 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=20.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...-|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345689999999999999998874
No 436
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.00 E-value=0.12 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998875
No 437
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.00 E-value=0.21 Score=48.76 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=32.5
Q ss_pred eecchHHHHHHHHhcCCCC-----CCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 164 GRDKEKEETVELLLSDDLR-----TDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 164 Gr~~~~~~l~~~L~~~~~~-----~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
|.++-++.|.+.+...... .......|+|+|.+|+|||||...+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 4555666666666432210 1234568999999999999999999875
No 438
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.99 E-value=0.13 Score=43.63 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..-|.|+|.+|+|||||...+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999998753
No 439
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.98 E-value=0.087 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 440
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.97 E-value=0.12 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 48999999999999999999873
No 441
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.96 E-value=0.072 Score=44.66 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=10.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...-|.|+|.+|+|||||...+.++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999888764
No 442
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.91 E-value=0.13 Score=45.59 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=30.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKS 237 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 237 (423)
-.++.|.|.+|+|||+||.++..+. ....-..+++++...+ ...+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~--~~~~~~~ 77 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEER--ARDLRRE 77 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSC--HHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCC--HHHHHHH
Confidence 3589999999999999998875432 1222345666665543 3444443
No 443
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.86 E-value=0.14 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.8
Q ss_pred CCceEEEEEccCCccHHHHHHHH
Q 042891 185 DGLSVIPIIGMGGIGKTTLAQLV 207 (423)
Q Consensus 185 ~~~~vi~I~G~gGiGKTtLA~~v 207 (423)
.+..-|.|+|.||+||||+++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34567899999999999999885
No 444
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.82 E-value=0.19 Score=45.65 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.3
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999874
No 445
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.81 E-value=0.06 Score=54.84 Aligned_cols=51 Identities=27% Similarity=0.317 Sum_probs=30.8
Q ss_pred CceeeecchHHHHHHHHhcCCCC--CC---CCceEEEEEccCCccHHHHHHHHHhc
Q 042891 160 AKVYGRDKEKEETVELLLSDDLR--TD---DGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 160 ~~~vGr~~~~~~l~~~L~~~~~~--~~---~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.++|.+..++.+.-.|...... .+ ..-.-|.++|++|+|||+||+.+.+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 35667666555554444322100 00 00115889999999999999999873
No 446
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.80 E-value=0.15 Score=53.98 Aligned_cols=52 Identities=25% Similarity=0.187 Sum_probs=37.5
Q ss_pred CCceeeecchHHHHHHHHhcCCCC-------CCCCceEEEEEccCCccHHHHHHHHHhc
Q 042891 159 EAKVYGRDKEKEETVELLLSDDLR-------TDDGLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 159 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-..+.|.+..++.|.+.+...... .-.....+.++|++|+||||||+.+.+.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 346788888888888876432100 1123456889999999999999999874
No 447
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.77 E-value=0.14 Score=49.39 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 346999999999999999999987
No 448
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.77 E-value=0.27 Score=49.73 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|.|++|+||||+|+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999873
No 449
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=90.72 E-value=0.23 Score=42.43 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=24.4
Q ss_pred eEEEEE-ccCCccHHHHHHHHHhccccccCccceeeEEeC
Q 042891 188 SVIPII-GMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVS 226 (423)
Q Consensus 188 ~vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 226 (423)
++|+|+ +-||+||||+|..+.... ...=..++-++..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D 39 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTD 39 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECC
Confidence 578888 678999999998887632 2222234555544
No 450
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.71 E-value=0.13 Score=44.49 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.--|.|+|.+|+|||||...+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998864
No 451
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.71 E-value=0.091 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.-.|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999987753
No 452
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.69 E-value=0.25 Score=43.68 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.3
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|+|.|-||+||||+|..+..-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~ 23 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKI 23 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHH
Confidence 677899999999999988763
No 453
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.65 E-value=0.16 Score=45.56 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998764
No 454
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.48 E-value=0.37 Score=45.20 Aligned_cols=52 Identities=13% Similarity=0.015 Sum_probs=35.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHhh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSIA 243 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l~ 243 (423)
.++.|.|.+|+||||||..+..+... .=..++|++.. .+...+...++....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHhh
Confidence 58999999999999999998875322 22345666654 345666666665543
No 455
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.45 E-value=0.14 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.+++|+|+.|+|||||.+.+.+.
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999874
No 456
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.41 E-value=0.15 Score=50.27 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999999875
No 457
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.40 E-value=0.34 Score=45.68 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=21.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
..+++.+.|.||+||||+|..+..
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 457899999999999999988776
No 458
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.35 E-value=0.12 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=19.2
Q ss_pred EEEEccCCccHHHHHHHHHhc
Q 042891 190 IPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~ 210 (423)
|+|+|..|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999864
No 459
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.20 E-value=0.2 Score=51.07 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.0
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.|.|+.|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998773
No 460
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.13 E-value=0.2 Score=47.73 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=21.8
Q ss_pred CCCceEEEEEc-cCCccHHHHHHHHHh
Q 042891 184 DDGLSVIPIIG-MGGIGKTTLAQLVYN 209 (423)
Q Consensus 184 ~~~~~vi~I~G-~gGiGKTtLA~~v~~ 209 (423)
..+.++|+|+| -||+||||+|..+..
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAI 166 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHH
Confidence 45678999985 899999999988776
No 461
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.10 E-value=0.16 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.|+++|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998874
No 462
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.07 E-value=0.18 Score=46.47 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999998864
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.07 E-value=0.14 Score=51.41 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 464
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.06 E-value=0.16 Score=48.26 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.8
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
+.++|+|+|.+|+|||||...+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999874
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.05 E-value=0.15 Score=51.12 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=21.3
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 466
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.96 E-value=0.42 Score=44.74 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=28.9
Q ss_pred CceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcH
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDI 231 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 231 (423)
..+++.+.|-||+||||+|..+... ....=..++-|+.....+.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDPAHNL 58 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCSSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCCCCCh
Confidence 4578888899999999999888763 2222234555555543333
No 467
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.95 E-value=0.17 Score=44.11 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=21.5
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.+.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999998874
No 468
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.93 E-value=0.17 Score=50.19 Aligned_cols=25 Identities=8% Similarity=-0.056 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...+|.+.|+.|+||||+|+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 4478999999999999999999884
No 469
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=89.90 E-value=0.47 Score=46.60 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=38.9
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc-HHHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD-IIWVTKSILK 240 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~ 240 (423)
..++|+|..|+|||+|+..+.++. .+.+-+.++++-+++... ..++.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 478999999999999999998852 233457888888888764 4455555554
No 470
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.89 E-value=0.11 Score=43.89 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..--|.|+|.+|+|||||...+.++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998653
No 471
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.87 E-value=0.33 Score=43.79 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
....|.++|.+|+|||||...+.+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998743
No 472
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.85 E-value=0.16 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999986
No 473
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.84 E-value=0.094 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.4
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 4899999999999999999976
No 474
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.75 E-value=0.32 Score=43.75 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=22.3
Q ss_pred CceEEEEEccCCccHHHHHHHHHhcc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
....|+|+|.+|+|||||...+....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998743
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.74 E-value=0.16 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=21.6
Q ss_pred CceEEEEEccCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999999876
No 476
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=89.70 E-value=0.43 Score=46.67 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=38.4
Q ss_pred eEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc-HHHHHHHHHHH
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD-IIWVTKSILKS 241 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~il~~ 241 (423)
..++|+|..|+|||+|++.+.++. .+.+-+.++++-+++... +.++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 478999999999999999998752 223446677888887653 44566666543
No 477
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.53 E-value=0.2 Score=42.02 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.-|.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 478
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.44 E-value=0.49 Score=46.16 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=36.0
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSI 242 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 242 (423)
-.++.|.|.+|+||||||..+..+.... .=..++|++... +...+...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHHHH
Confidence 3589999999999999999988753221 123577777654 3456666665443
No 479
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.39 E-value=0.18 Score=51.29 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
.+++|+|+.|+|||||.+.+..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.34 E-value=0.21 Score=43.67 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.2
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..|.+-|+.|+||||+++.+.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999884
No 481
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.32 E-value=0.25 Score=40.36 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.3
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+..|+|+.|.|||||...++-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999888753
No 482
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.31 E-value=0.21 Score=44.97 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
...|+++|.+|+|||||...+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357899999999999999999874
No 483
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.30 E-value=0.19 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|+|||||++.+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999987
No 484
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.29 E-value=0.46 Score=41.08 Aligned_cols=40 Identities=20% Similarity=0.074 Sum_probs=26.1
Q ss_pred EEEEE-ccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcH
Q 042891 189 VIPII-GMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDI 231 (423)
Q Consensus 189 vi~I~-G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 231 (423)
+|+|+ +-||+||||+|..+..-. ...- .++-|+.....+.
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~l--a~~g-~VlliD~D~q~~~ 42 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYL--ALQG-ETLLIDGDPNRSA 42 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HTTS-CEEEEEECTTCHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHH--HhcC-CEEEEECCCCCCH
Confidence 56775 779999999999887632 2222 5566665544333
No 485
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.28 E-value=0.38 Score=47.05 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=32.6
Q ss_pred EEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc-HHHHHHHH
Q 042891 189 VIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD-IIWVTKSI 238 (423)
Q Consensus 189 vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 238 (423)
.++|+|.+|+|||||+..+.++... ..-+..+++.+++... ..++..++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHh
Confidence 6899999999999999998875322 2224456666766543 33444434
No 486
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=89.23 E-value=0.21 Score=44.49 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~ 23 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998865
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.22 E-value=0.19 Score=42.50 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=25.0
Q ss_pred EEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCc
Q 042891 190 IPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFD 230 (423)
Q Consensus 190 i~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 230 (423)
|.|+|.+|+||||+|.++... . ..++++.-+..++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~--~~~~yiaT~~~~d 36 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----A--PQVLYIATSQILD 36 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----C--SSEEEEECCCC--
T ss_pred EEEECCCCCcHHHHHHHHHhc----C--CCeEEEecCCCCC
Confidence 689999999999999999863 1 2355666555554
No 488
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=89.18 E-value=0.27 Score=43.21 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.8
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
..+|+|.|+.|+||||+|+.+...
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~ 37 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEE 37 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 469999999999999999999873
No 489
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.17 E-value=0.25 Score=44.05 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=21.4
Q ss_pred ceEEEEEccCCccHHHHHHHHHhcc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDV 211 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~ 211 (423)
.-.|+|+|.+|+|||||...+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999988643
No 490
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=89.15 E-value=0.2 Score=47.46 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred CceEEEEEccCCccHHHHHHHHHhc
Q 042891 186 GLSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 186 ~~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
....|+|+|.+|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999998764
No 491
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.2 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
-.+++|+|+.|+|||||.+.+..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35999999999999999999876
No 492
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.02 E-value=0.093 Score=44.89 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=4.8
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|.|+|.+|+|||||...+.++
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988764
No 493
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=88.94 E-value=1 Score=45.93 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=39.1
Q ss_pred eeecchHHHHHHHHhcCCCCCCCCceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHH
Q 042891 163 YGRDKEKEETVELLLSDDLRTDDGLSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSIL 239 (423)
Q Consensus 163 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 239 (423)
.+......+.+...+. -++..|.|++|.|||+++..+... ....-...+.++...+..+..+...+.
T Consensus 179 ~~ln~~Q~~av~~~l~--------~~~~li~GppGTGKT~~~~~~i~~--l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ--------RPLSLIQGPPGTGKTVTSATIVYH--LARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CCCCHHHHHHHHHHHT--------CSEEEEECCTTSCHHHHHHHHHHH--HHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--------CCCeEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 3444445555554432 136789999999999987766542 222124466676666554555555443
No 494
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=88.88 E-value=0.21 Score=48.93 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=33.6
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHH
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSIL 239 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il 239 (423)
-.++.|.|.+|+||||||..+..+.... .=..++|++... +...+...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 3589999999999999999988753221 113577776554 3345555544
No 495
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.84 E-value=0.18 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=19.8
Q ss_pred eEEEEEccCCccHHHHHHHHHhc
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
--|+|+|.+|+|||||...++..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999987653
No 496
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.82 E-value=0.54 Score=46.64 Aligned_cols=53 Identities=9% Similarity=-0.028 Sum_probs=36.1
Q ss_pred ceEEEEEccCCccHHHHHHHHHhccccccCccceeeEEeCCcCcHHHHHHHHHHHh
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYNDVRVHNHFDLKSWTCVSEDFDIIWVTKSILKSI 242 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~il~~l 242 (423)
-.++.|.|.+|+||||||.++..+.... +=..++|++... +..++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 3588999999999999999988753222 123577777654 3456666665443
No 497
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.79 E-value=0.2 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.7
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999987
No 498
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.78 E-value=0.19 Score=51.06 Aligned_cols=22 Identities=32% Similarity=0.670 Sum_probs=20.6
Q ss_pred eEEEEEccCCccHHHHHHHHHh
Q 042891 188 SVIPIIGMGGIGKTTLAQLVYN 209 (423)
Q Consensus 188 ~vi~I~G~gGiGKTtLA~~v~~ 209 (423)
.+++|+|+.|.|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999999986
No 499
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.68 E-value=0.28 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.6
Q ss_pred CceEEEEEc-cCCccHHHHHHHHHh
Q 042891 186 GLSVIPIIG-MGGIGKTTLAQLVYN 209 (423)
Q Consensus 186 ~~~vi~I~G-~gGiGKTtLA~~v~~ 209 (423)
..++|+|++ -||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 457888885 589999999988876
No 500
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.65 E-value=0.33 Score=42.58 Aligned_cols=24 Identities=21% Similarity=-0.126 Sum_probs=20.9
Q ss_pred ceEEEEEccCCccHHHHHHHHHhc
Q 042891 187 LSVIPIIGMGGIGKTTLAQLVYND 210 (423)
Q Consensus 187 ~~vi~I~G~gGiGKTtLA~~v~~~ 210 (423)
-.++.|+|..|+||||++..+.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999888774
Done!