BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042892
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 81 VYGLFLCRGDFGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNISFFSV 136
V L LC F AET AT T CP E GY E ++RY +++ +
Sbjct: 7 VVALLLCGQLFAAETGNE----ATDATDDSCPKPPEIPKGYVEHMVRYHCQTYYKL 58
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 91 FGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNISFFSVLDTSF 141
FG +TC++ V+V SDT GK +G+EE ++NI + + F
Sbjct: 55 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIKRWQAIYKQF 97
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 91 FGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNISFFSVLDTSFRLSQ 145
FG +TC++ V+V SDT GK +G+EE ++NI + + F + +
Sbjct: 44 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIKKWQAIYKQFDVDR 90
>pdb|1AJ5|A Chain A, Calpain Domain Vi Apo
pdb|1AJ5|B Chain B, Calpain Domain Vi Apo
Length = 173
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 91 FGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNIS 132
FG +TC++ V+V SDT GK +G+EE ++NI
Sbjct: 44 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIK 77
>pdb|1DF0|B Chain B, Crystal Structure Of M-Calpain
pdb|1U5I|B Chain B, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
pdb|3DF0|B Chain B, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|B Chain B, Structure Of M-Calpain In Complex With Calpastatin
Length = 184
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 91 FGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNIS 132
FG +TC++ V+V SDT GK +G+EE ++NI
Sbjct: 55 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIK 88
>pdb|1NP8|A Chain A, 18-K C-Terminally Trunucated Small Subunit Of Calpain
pdb|1NP8|B Chain B, 18-K C-Terminally Trunucated Small Subunit Of Calpain
Length = 159
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 91 FGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNIS 132
FG +TC++ V+V SDT GK +G+EE ++NI
Sbjct: 51 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIK 84
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 26.6 bits (57), Expect = 6.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 91 FGAETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNI 131
FG +TC++ V+V SDT GK +G+EE ++NI
Sbjct: 771 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNI 803
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,193,837
Number of Sequences: 62578
Number of extensions: 141131
Number of successful extensions: 596
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 7
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)