Query 042892
Match_columns 157
No_of_seqs 119 out of 1076
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 100.0 9.9E-29 2.1E-33 174.8 8.3 102 28-133 1-106 (106)
2 PF10717 ODV-E18: Occlusion-de 37.8 28 0.0006 23.6 2.0 18 1-18 28-45 (85)
3 PF03207 OspD: Borrelia outer 27.2 1.4E+02 0.003 23.1 4.5 14 4-17 7-20 (254)
4 PF03058 Sar8_2: Sar8.2 family 27.2 37 0.0008 23.4 1.2 16 2-17 6-22 (93)
5 PF00737 PsbH: Photosystem II 24.0 55 0.0012 20.2 1.4 13 1-13 28-41 (52)
6 CHL00066 psbH photosystem II p 22.3 63 0.0014 21.3 1.5 14 1-14 43-57 (73)
7 COG4537 ComGC Competence prote 22.0 56 0.0012 23.0 1.3 13 4-16 23-35 (107)
8 PRK02624 psbH photosystem II r 21.5 68 0.0015 20.5 1.5 13 1-13 31-44 (64)
9 PLN00055 photosystem II reacti 20.2 73 0.0016 21.0 1.5 14 1-14 43-57 (73)
10 PF08194 DIM: DIM protein; In 20.0 1.2E+02 0.0027 17.2 2.3 10 22-31 23-32 (36)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.95 E-value=9.9e-29 Score=174.78 Aligned_cols=102 Identities=41% Similarity=0.825 Sum_probs=77.7
Q ss_pred ccCCC-C--CCc-CCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecCCCCCeeEEeccccCCCCccchHHHHHHH
Q 042892 28 YQNCP-S--TNF-TPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEPNKVYGLFLCRGDFGAETCQNCVSVA 103 (157)
Q Consensus 28 ~~~C~-~--~~~-~~~~~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~~~vYgl~qC~~Dls~~~C~~Cl~~a 103 (157)
|+.|+ + +++ +++++|+++++.+|..|+..++.... .+|++++.|.+++++|||+||++|+++++|+.||+.+
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~----~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a 76 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSS----KGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADA 76 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-----TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccc----cCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHH
Confidence 78899 3 566 56777999999999999999875421 5899998788889999999999999999999999999
Q ss_pred HHHhhhhCCCCceEEEEcCceEEEEcCcCC
Q 042892 104 TSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (157)
Q Consensus 104 ~~~~~~~C~~~~ga~v~~~~C~lRYs~~~F 133 (157)
+..++++|++++||+||+++|+||||+++|
T Consensus 77 ~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 77 VANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 999999999999999999999999999998
No 2
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=37.76 E-value=28 Score=23.60 Aligned_cols=18 Identities=17% Similarity=0.443 Sum_probs=10.1
Q ss_pred CchHHHHHHHHHHHhhcc
Q 042892 1 MNVILVFVTALSVQISLT 18 (157)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (157)
|-|++.+.|++|+++.++
T Consensus 28 MtILivLVIIiLlImlfq 45 (85)
T PF10717_consen 28 MTILIVLVIIILLIMLFQ 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345556666666655543
No 3
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=27.18 E-value=1.4e+02 Score=23.14 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhc
Q 042892 4 ILVFVTALSVQISL 17 (157)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (157)
+++++++||+++++
T Consensus 7 ill~slflllsisc 20 (254)
T PF03207_consen 7 ILLLSLFLLLSISC 20 (254)
T ss_pred HHHHHHHHHHhhhh
Confidence 67778888888885
No 4
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=27.18 E-value=37 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=10.4
Q ss_pred chHHHHHH-HHHHHhhc
Q 042892 2 NVILVFVT-ALSVQISL 17 (157)
Q Consensus 2 ~~~~~~~~-~~~~~~~~ 17 (157)
|++|.|++ +||+.++.
T Consensus 6 nlfl~lSLailLmIISS 22 (93)
T PF03058_consen 6 NLFLCLSLAILLMIISS 22 (93)
T ss_pred hhHHHHHHHHHHHHHhh
Confidence 55667777 56667764
No 5
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=23.97 E-value=55 Score=20.16 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=5.9
Q ss_pred Cch-HHHHHHHHHH
Q 042892 1 MNV-ILVFVTALSV 13 (157)
Q Consensus 1 ~~~-~~~~~~~~~~ 13 (157)
|++ +.+|+++++.
T Consensus 28 M~~~m~lf~vfl~i 41 (52)
T PF00737_consen 28 MGVFMALFAVFLLI 41 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 566 4444444333
No 6
>CHL00066 psbH photosystem II protein H
Probab=22.31 E-value=63 Score=21.30 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=6.7
Q ss_pred Cch-HHHHHHHHHHH
Q 042892 1 MNV-ILVFVTALSVQ 14 (157)
Q Consensus 1 ~~~-~~~~~~~~~~~ 14 (157)
|++ +.+|++++++.
T Consensus 43 Mgv~m~lf~vfl~ii 57 (73)
T CHL00066 43 MGVAMALFAVFLSII 57 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667 44444444433
No 7
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=21.97 E-value=56 Score=23.02 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhh
Q 042892 4 ILVFVTALSVQIS 16 (157)
Q Consensus 4 ~~~~~~~~~~~~~ 16 (157)
+++++++||++++
T Consensus 23 LlIISiLlLl~iP 35 (107)
T COG4537 23 LLIISILLLLFIP 35 (107)
T ss_pred HHHHHHHHHHHcc
Confidence 4455555555555
No 8
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=21.49 E-value=68 Score=20.52 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=6.1
Q ss_pred Cch-HHHHHHHHHH
Q 042892 1 MNV-ILVFVTALSV 13 (157)
Q Consensus 1 ~~~-~~~~~~~~~~ 13 (157)
|++ +.+|++++++
T Consensus 31 Mgv~m~Lf~vFl~i 44 (64)
T PRK02624 31 MAVFMVLFLVFLLI 44 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 566 4444444443
No 9
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=20.23 E-value=73 Score=20.99 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=6.6
Q ss_pred Cch-HHHHHHHHHHH
Q 042892 1 MNV-ILVFVTALSVQ 14 (157)
Q Consensus 1 ~~~-~~~~~~~~~~~ 14 (157)
|++ +.+|++++++.
T Consensus 43 Mg~~m~lf~vfl~ii 57 (73)
T PLN00055 43 MGVAMALFAVFLSII 57 (73)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666 44444444433
No 10
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=20.04 E-value=1.2e+02 Score=17.15 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=5.4
Q ss_pred CCCcccccCC
Q 042892 22 DKPTYIYQNC 31 (157)
Q Consensus 22 ~~~~~~~~~C 31 (157)
++...+...|
T Consensus 23 pG~ViING~C 32 (36)
T PF08194_consen 23 PGNVIINGKC 32 (36)
T ss_pred CCeEEECcee
Confidence 4445565555
Done!