Query 042892
Match_columns 157
No_of_seqs 119 out of 1076
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:44:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 1.1E-31 3.7E-36 190.0 10.4 106 23-133 2-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 5.1E-31 1.7E-35 186.5 10.4 106 23-133 2-108 (108)
3 3arc_H Photosystem II reaction 22.2 38 0.0013 20.9 1.4 13 1-13 30-43 (65)
4 1gff_3 Bacteriophage G4 capsid 16.4 60 0.0021 16.0 1.1 11 113-123 11-21 (26)
5 2xk0_A Polycomb protein PCL; t 14.1 88 0.003 19.5 1.7 12 121-132 41-52 (69)
6 1weo_A Cellulose synthase, cat 10.3 59 0.002 21.4 0.0 28 93-130 43-70 (93)
7 2ljs_A Trypsin inhibitor 3; be 8.4 69 0.0024 16.4 -0.2 8 84-91 8-15 (30)
8 1m06_J J protein, small core p 8.1 63 0.0022 16.0 -0.4 11 113-123 10-20 (26)
9 1g25_A CDK-activating kinase a 7.6 1.6E+02 0.0055 16.7 1.2 18 95-112 30-47 (65)
10 3p8d_A Medulloblastoma antigen 7.6 1.2E+02 0.0042 18.6 0.7 15 121-135 10-24 (67)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.97 E-value=1.1e-31 Score=190.00 Aligned_cols=106 Identities=19% Similarity=0.485 Sum_probs=96.9
Q ss_pred CCcccccCCCCCCcCCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecCC-CCCeeEEeccccCCCCccchHHHHH
Q 042892 23 KPTYIYQNCPSTNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGH-EPNKVYGLFLCRGDFGAETCQNCVS 101 (157)
Q Consensus 23 ~~~~~~~~C~~~~~~~~~~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~-~~~~vYgl~qC~~Dls~~~C~~Cl~ 101 (157)
++.++++.|++++++++++|++||+.||..|+.+++.++ .+|++...+. ++++||||+|||||+++++|+.||+
T Consensus 2 ~t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~-----~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~ 76 (108)
T 3a2e_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSG-----YDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLS 76 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTT-----SEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CcceeeeecCCCccCCCChHHHHHHHHHHHHHhhCcccc-----CCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHH
Confidence 467899999888999999999999999999999987654 5677776654 5689999999999999999999999
Q ss_pred HHHHHhhhhCCCCceEEEEcCceEEEEcCcCC
Q 042892 102 VATSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (157)
Q Consensus 102 ~a~~~~~~~C~~~~ga~v~~~~C~lRYs~~~F 133 (157)
.++.+++++|++++||+||+++|+||||+++|
T Consensus 77 ~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 77 NLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.97 E-value=5.1e-31 Score=186.45 Aligned_cols=106 Identities=19% Similarity=0.479 Sum_probs=97.0
Q ss_pred CCcccccCCCCCCcCCCcHHHHHHHHHHHHHHHHhccCCCCccccCeeeeecCCCC-CeeEEeccccCCCCccchHHHHH
Q 042892 23 KPTYIYQNCPSTNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEP-NKVYGLFLCRGDFGAETCQNCVS 101 (157)
Q Consensus 23 ~~~~~~~~C~~~~~~~~~~f~~~l~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~-~~vYgl~qC~~Dls~~~C~~Cl~ 101 (157)
+.+++++.|+++++++++.|+++|+.||..|+.+++.++ .+|++++.|..+ ++||||+||+||+++++|+.||+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~-----~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~ 76 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSG-----YDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLS 76 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTT-----SEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCC-----cccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHH
Confidence 345689999988999999999999999999999987543 479888877655 89999999999999999999999
Q ss_pred HHHHHhhhhCCCCceEEEEcCceEEEEcCcCC
Q 042892 102 VATSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (157)
Q Consensus 102 ~a~~~~~~~C~~~~ga~v~~~~C~lRYs~~~F 133 (157)
.++.+++++|++++||+||+++|+||||+++|
T Consensus 77 ~a~~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 77 NLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999999999987
No 3
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=22.21 E-value=38 Score=20.86 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=6.0
Q ss_pred Cch-HHHHHHHHHH
Q 042892 1 MNV-ILVFVTALSV 13 (157)
Q Consensus 1 ~~~-~~~~~~~~~~ 13 (157)
|++ +.+|++++++
T Consensus 30 Mgv~m~Lf~vFl~i 43 (65)
T 3arc_H 30 MAVFMGLFLVFLLI 43 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 566 4444444333
No 4
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=16.42 E-value=60 Score=15.99 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=8.2
Q ss_pred CCceEEEEcCc
Q 042892 113 FGKENTIGYEE 123 (157)
Q Consensus 113 ~~~ga~v~~~~ 123 (157)
.++|+++||.+
T Consensus 11 r~kgarlwyvg 21 (26)
T 1gff_3 11 KSKGARLWYVG 21 (26)
T ss_pred CCCceEEEEec
Confidence 46799999853
No 5
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=14.11 E-value=88 Score=19.48 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=9.6
Q ss_pred cCceEEEEcCcC
Q 042892 121 YEECLLRYSNIS 132 (157)
Q Consensus 121 ~~~C~lRYs~~~ 132 (157)
-.+|++||++..
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 358999999864
No 6
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=10.25 E-value=59 Score=21.45 Aligned_cols=28 Identities=29% Similarity=0.746 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHHHhhhhCCCCceEEEEcCceEEEEcC
Q 042892 93 AETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSN 130 (157)
Q Consensus 93 ~~~C~~Cl~~a~~~~~~~C~~~~ga~v~~~~C~lRYs~ 130 (157)
=.-|+.|+.--..+-.+.|| +|-.||..
T Consensus 43 FPvCrpCyEYErkeG~q~Cp----------qCktrYkr 70 (93)
T 1weo_A 43 FPACRPCYEYERREGTQNCP----------QCKTRYKR 70 (93)
T ss_dssp CCCCHHHHHHHHHTSCSSCT----------TTCCCCCC
T ss_pred ChhhHHHHHHHHhccCcccc----------ccCCcccc
Confidence 35799999999999999998 88899974
No 7
>2ljs_A Trypsin inhibitor 3; beta strand, helix, cyclic backbone, hydrolase inhibitor; HET: PCA; NMR {Momordica cochinchinensis}
Probab=8.45 E-value=69 Score=16.39 Aligned_cols=8 Identities=50% Similarity=0.654 Sum_probs=5.9
Q ss_pred eccccCCC
Q 042892 84 LFLCRGDF 91 (157)
Q Consensus 84 l~qC~~Dl 91 (157)
|.+|++|.
T Consensus 8 lkkckrds 15 (30)
T 2ljs_A 8 LKKCRRDS 15 (30)
T ss_dssp CCBCSSGG
T ss_pred HHHhcccc
Confidence 56888874
No 8
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=8.09 E-value=63 Score=15.97 Aligned_cols=11 Identities=18% Similarity=0.051 Sum_probs=7.7
Q ss_pred CCceEEEEcCc
Q 042892 113 FGKENTIGYEE 123 (157)
Q Consensus 113 ~~~ga~v~~~~ 123 (157)
.++|+++||.+
T Consensus 10 r~kgarlwyvg 20 (26)
T 1m06_J 10 RRKGARLWYVG 20 (26)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCceEEEEEc
Confidence 45688888753
No 9
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=7.62 E-value=1.6e+02 Score=16.71 Aligned_cols=18 Identities=33% Similarity=0.772 Sum_probs=13.2
Q ss_pred chHHHHHHHHHHhhhhCC
Q 042892 95 TCQNCVSVATSDTAQLCP 112 (157)
Q Consensus 95 ~C~~Cl~~a~~~~~~~C~ 112 (157)
-|..|+......-...||
T Consensus 30 fC~~Ci~~~~~~~~~~CP 47 (65)
T 1g25_A 30 LCESCVDLLFVRGAGNCP 47 (65)
T ss_dssp EEHHHHHHHHHTTSSSCT
T ss_pred hHHHHHHHHHHcCCCcCC
Confidence 589999988665445676
No 10
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=7.58 E-value=1.2e+02 Score=18.57 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=12.7
Q ss_pred cCceEEEEcCcCCCC
Q 042892 121 YEECLLRYSNISFFS 135 (157)
Q Consensus 121 ~~~C~lRYs~~~F~~ 135 (157)
++.|+-||++..||.
T Consensus 10 Gd~vmArW~D~~yYp 24 (67)
T 3p8d_A 10 NEQVLACWSDCRFYP 24 (67)
T ss_dssp TCEEEEECTTSCEEE
T ss_pred CCEEEEEcCCCCEee
Confidence 578999999888885
Done!