Query 042892
Match_columns 157
No_of_seqs 119 out of 1076
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 18:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042892.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042892hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axth1 f.23.33.1 (H:2-65) Pho 17.3 27 0.002 19.9 1.4 13 1-13 30-43 (64)
2 d1weoa_ g.44.1.1 (A:) Cellulos 10.2 34 0.0024 20.9 0.4 30 93-132 43-72 (93)
3 d1g25a_ g.44.1.1 (A:) TFIIH Ma 9.7 54 0.004 17.9 1.2 20 94-113 29-48 (65)
4 d1rmda2 g.44.1.1 (A:1-86) V(D) 8.0 78 0.0057 18.6 1.5 19 94-112 44-62 (86)
5 d1ha9a_ g.3.2.1 (A:) Trypsin i 6.3 48 0.0035 16.1 -0.2 8 84-91 12-19 (34)
6 d1wiga2 g.39.1.3 (A:33-73) Act 6.0 61 0.0045 16.7 0.2 11 115-125 18-28 (41)
7 d1f32a_ d.62.1.1 (A:) Pepsin i 5.3 1.7E+02 0.012 19.0 2.2 22 106-127 60-81 (147)
8 d2baia1 g.87.1.1 (A:1-32) Poly 4.6 2E+02 0.015 13.3 1.6 15 86-100 9-23 (32)
9 d2axtz1 f.17.5.1 (Z:1-62) Phot 4.3 2.4E+02 0.017 15.6 2.1 17 1-17 1-17 (62)
10 d1fbva4 g.44.1.1 (A:356-434) C 4.3 1.5E+02 0.011 16.6 1.2 17 96-112 46-62 (79)
No 1
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.30 E-value=27 Score=19.94 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=5.9
Q ss_pred Cch-HHHHHHHHHH
Q 042892 1 MNV-ILVFVTALSV 13 (157)
Q Consensus 1 ~~~-~~~~~~~~~~ 13 (157)
|++ +.+|+++++.
T Consensus 30 Mgv~m~Lf~vfl~i 43 (64)
T d2axth1 30 MAVFMGLFLVFLLI 43 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 566 3444444333
No 2
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=10.16 E-value=34 Score=20.90 Aligned_cols=30 Identities=27% Similarity=0.726 Sum_probs=25.3
Q ss_pred ccchHHHHHHHHHHhhhhCCCCceEEEEcCceEEEEcCcC
Q 042892 93 AETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNIS 132 (157)
Q Consensus 93 ~~~C~~Cl~~a~~~~~~~C~~~~ga~v~~~~C~lRYs~~~ 132 (157)
=.-|+.|..--..+-.+.|| +|-.||....
T Consensus 43 FPvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~k 72 (93)
T d1weoa_ 43 FPACRPCYEYERREGTQNCP----------QCKTRYKRLR 72 (93)
T ss_dssp CCCCHHHHHHHHHTSCSSCT----------TTCCCCCCCT
T ss_pred CccchHHHHHHHhccCccCc----------ccCChhhhhc
Confidence 35799999999999999998 8889997654
No 3
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.69 E-value=54 Score=17.92 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=15.7
Q ss_pred cchHHHHHHHHHHhhhhCCC
Q 042892 94 ETCQNCVSVATSDTAQLCPF 113 (157)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (157)
.-|..||..........||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 36999999998766667874
No 4
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.04 E-value=78 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHHhhhhCC
Q 042892 94 ETCQNCVSVATSDTAQLCP 112 (157)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~ 112 (157)
.-|+.|+......-...||
T Consensus 44 ~FC~~Ci~~~~~~~~~~CP 62 (86)
T d1rmda2 44 LFCRICILRCLKVMGSYCP 62 (86)
T ss_dssp EEEHHHHHHHHHHTCSBCT
T ss_pred hhhHHHHHHHHhhCCCcCc
Confidence 3699999999876555787
No 5
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=6.27 E-value=48 Score=16.12 Aligned_cols=8 Identities=50% Similarity=0.654 Sum_probs=6.1
Q ss_pred eccccCCC
Q 042892 84 LFLCRGDF 91 (157)
Q Consensus 84 l~qC~~Dl 91 (157)
|-||++|.
T Consensus 12 lkkcrrds 19 (34)
T d1ha9a_ 12 LKKCRRDS 19 (34)
T ss_dssp CCBCSSGG
T ss_pred HHHhcccc
Confidence 56899884
No 6
>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.00 E-value=61 Score=16.67 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=7.5
Q ss_pred ceEEEEcCceE
Q 042892 115 KENTIGYEECL 125 (157)
Q Consensus 115 ~ga~v~~~~C~ 125 (157)
+|..||.+.|.
T Consensus 18 QGs~IWHP~C~ 28 (41)
T d1wiga2 18 QGSSIWHPACR 28 (41)
T ss_dssp ETTEEECTTHH
T ss_pred cCCceeCCccc
Confidence 46677777773
No 7
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=5.35 E-value=1.7e+02 Score=19.05 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=17.7
Q ss_pred HhhhhCCCCceEEEEcCceEEE
Q 042892 106 DTAQLCPFGKENTIGYEECLLR 127 (157)
Q Consensus 106 ~~~~~C~~~~ga~v~~~~C~lR 127 (157)
+.+..|.+.---..+.++|+++
T Consensus 60 ~~PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 60 KPPPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CCCGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCCCcCcceEEEEeeeEEE
Confidence 3457888877888899999986
No 8
>d2baia1 g.87.1.1 (A:1-32) Polyprotein leader polypeptide {Mengo encephalomyocarditis virus [TaxId: 12107]}
Probab=4.59 E-value=2e+02 Score=13.33 Aligned_cols=15 Identities=27% Similarity=0.824 Sum_probs=11.9
Q ss_pred cccCCCCccchHHHH
Q 042892 86 LCRGDFGAETCQNCV 100 (157)
Q Consensus 86 qC~~Dls~~~C~~Cl 100 (157)
.|...++-..|..|-
T Consensus 9 icahsmtfeecpkcs 23 (32)
T d2baia1 9 ICAHSMTFEECPKCS 23 (32)
T ss_dssp CCSSSSCGGGHHHHH
T ss_pred HHHhhccHhhCcchh
Confidence 377888888998885
No 9
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.35 E-value=2.4e+02 Score=15.58 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHhhc
Q 042892 1 MNVILVFVTALSVQISL 17 (157)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (157)
|.+++.++++-|..+++
T Consensus 1 Mti~fQl~v~ALi~~SF 17 (62)
T d2axtz1 1 MTILFQLALAALVILSF 17 (62)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CeeHHHHHHHHHHHHHH
No 10
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=1.5e+02 Score=16.58 Aligned_cols=17 Identities=29% Similarity=0.806 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhCC
Q 042892 96 CQNCVSVATSDTAQLCP 112 (157)
Q Consensus 96 C~~Cl~~a~~~~~~~C~ 112 (157)
|..|+......-...||
T Consensus 46 C~~Ci~~wl~~~~~~CP 62 (79)
T d1fbva4 46 CTSCLTSWQESEGQGCP 62 (79)
T ss_dssp CHHHHHHHHHTTCCSCT
T ss_pred eHHHHHHHHHHCcCcCC
Done!