Query 042895
Match_columns 150
No_of_seqs 180 out of 1251
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b8t_A Protein (CRP1); LIM dom 100.0 4.1E-33 1.4E-37 197.3 7.6 148 1-149 1-171 (192)
2 2xqn_T Testin, TESS; metal-bin 100.0 1.5E-32 5E-37 182.4 6.7 116 6-148 2-121 (126)
3 2xjy_A Rhombotin-2; oncoprotei 100.0 5.6E-32 1.9E-36 180.7 7.5 116 7-149 2-124 (131)
4 1rut_X Flinc4, fusion protein 100.0 4.5E-31 1.5E-35 186.3 6.1 118 6-150 4-128 (188)
5 2rgt_A Fusion of LIM/homeobox 100.0 2.8E-30 9.5E-35 179.4 6.4 117 5-149 4-124 (169)
6 2jtn_A LIM domain-binding prot 100.0 5.5E-30 1.9E-34 179.8 7.3 118 4-149 57-178 (182)
7 2cup_A Skeletal muscle LIM-pro 99.9 1.6E-27 5.6E-32 152.3 6.9 96 5-127 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.9 2.1E-25 7.1E-30 147.1 4.8 106 5-150 3-112 (122)
9 1j2o_A FLIN2, fusion of rhombo 99.9 7.4E-23 2.5E-27 133.3 6.8 101 5-150 1-104 (114)
10 2ehe_A Four and A half LIM dom 99.8 4.6E-21 1.6E-25 117.8 3.7 71 53-150 1-73 (82)
11 1a7i_A QCRP2 (LIM1); LIM domai 99.8 6E-21 2E-25 117.0 4.1 67 1-67 1-67 (81)
12 2egq_A FHL1 protein; LIM domai 99.8 1.6E-21 5.5E-26 118.4 1.4 70 53-149 1-75 (77)
13 2cuq_A Four and A half LIM dom 99.8 6.2E-21 2.1E-25 116.6 2.3 70 53-149 1-70 (80)
14 1x3h_A Leupaxin; paxillin fami 99.8 1.1E-20 3.6E-25 115.6 2.5 70 53-149 1-70 (80)
15 2dlo_A Thyroid receptor-intera 99.8 7E-20 2.4E-24 112.2 2.7 69 53-149 2-71 (81)
16 1x63_A Skeletal muscle LIM-pro 99.8 6.6E-20 2.2E-24 112.6 2.3 70 53-149 1-72 (82)
17 2cu8_A Cysteine-rich protein 2 99.8 7.8E-19 2.7E-23 106.3 6.4 67 1-67 3-70 (76)
18 1x6a_A LIMK-2, LIM domain kina 99.8 1E-19 3.6E-24 111.4 2.2 70 53-149 1-72 (81)
19 1iml_A CRIP, cysteine rich int 99.7 1.9E-18 6.7E-23 104.5 5.6 60 8-67 1-61 (76)
20 2d8y_A Eplin protein; LIM doma 99.7 3.4E-18 1.2E-22 106.9 6.3 76 6-81 14-89 (91)
21 1v6g_A Actin binding LIM prote 99.7 9.2E-19 3.1E-23 107.2 3.2 70 54-150 2-72 (81)
22 2dj7_A Actin-binding LIM prote 99.7 8.8E-18 3E-22 102.6 5.8 63 4-67 12-74 (80)
23 2co8_A NEDD9 interacting prote 99.7 1.9E-17 6.6E-22 101.5 5.5 59 92-150 13-74 (82)
24 1g47_A Pinch protein; LIM doma 99.7 1.5E-17 5E-22 100.8 4.5 67 1-67 5-72 (77)
25 1x68_A FHL5 protein; four-and- 99.7 1.6E-17 5.6E-22 100.4 4.6 62 6-67 4-68 (76)
26 2cur_A Skeletal muscle LIM-pro 99.7 2.1E-17 7.2E-22 98.1 5.0 62 5-67 3-64 (69)
27 2d8z_A Four and A half LIM dom 99.7 2.7E-17 9.1E-22 97.9 5.1 62 5-67 3-64 (70)
28 1nyp_A Pinch protein; LIM doma 99.7 1.9E-17 6.5E-22 97.4 3.8 62 6-68 4-65 (66)
29 1wyh_A SLIM 2, skeletal muscle 99.7 3.1E-17 1.1E-21 98.0 4.8 62 6-67 4-66 (72)
30 2dar_A PDZ and LIM domain prot 99.7 5.1E-17 1.7E-21 101.3 5.4 63 5-68 23-85 (90)
31 2d8x_A Protein pinch; LIM doma 99.7 6.2E-17 2.1E-21 96.3 5.4 63 5-68 3-65 (70)
32 1x4k_A Skeletal muscle LIM-pro 99.7 5.6E-17 1.9E-21 96.9 5.2 62 6-67 4-66 (72)
33 2cu8_A Cysteine-rich protein 2 99.7 4.1E-17 1.4E-21 98.6 4.3 60 90-149 5-66 (76)
34 1x4l_A Skeletal muscle LIM-pro 99.7 4.5E-17 1.5E-21 97.4 4.3 64 5-68 3-69 (72)
35 2d8x_A Protein pinch; LIM doma 99.7 3.9E-17 1.3E-21 97.2 3.5 57 93-149 4-60 (70)
36 2co8_A NEDD9 interacting prote 99.7 4E-17 1.4E-21 100.1 3.4 65 3-67 11-77 (82)
37 1x68_A FHL5 protein; four-and- 99.7 5.9E-17 2E-21 97.9 4.1 56 95-150 6-65 (76)
38 1x63_A Skeletal muscle LIM-pro 99.7 1.3E-16 4.4E-21 97.7 5.4 66 6-71 14-80 (82)
39 2dar_A PDZ and LIM domain prot 99.7 1.5E-16 5.1E-21 99.2 5.5 56 94-149 25-80 (90)
40 1x62_A C-terminal LIM domain p 99.6 4.2E-17 1.4E-21 99.3 2.5 64 5-69 13-76 (79)
41 1x64_A Alpha-actinin-2 associa 99.6 2E-16 6.8E-21 98.4 5.5 57 93-149 24-80 (89)
42 1x3h_A Leupaxin; paxillin fami 99.6 2E-16 6.9E-21 96.4 5.4 61 6-67 14-74 (80)
43 1x4l_A Skeletal muscle LIM-pro 99.6 6.9E-17 2.4E-21 96.6 3.1 56 94-149 5-64 (72)
44 1x61_A Thyroid receptor intera 99.6 1.7E-16 5.9E-21 94.8 4.8 63 5-67 3-66 (72)
45 1x64_A Alpha-actinin-2 associa 99.6 1.6E-16 5.5E-21 98.8 4.7 63 6-69 24-86 (89)
46 1nyp_A Pinch protein; LIM doma 99.6 5.2E-17 1.8E-21 95.5 2.3 55 95-149 6-60 (66)
47 2dj7_A Actin-binding LIM prote 99.6 1.7E-16 5.9E-21 96.8 4.6 55 94-149 15-70 (80)
48 2cur_A Skeletal muscle LIM-pro 99.6 8.6E-17 2.9E-21 95.4 3.1 56 94-149 5-60 (69)
49 2dlo_A Thyroid receptor-intera 99.6 2.5E-16 8.5E-21 96.2 5.3 63 4-67 12-75 (81)
50 1a7i_A QCRP2 (LIM1); LIM domai 99.6 6.8E-17 2.3E-21 98.8 2.7 58 92-149 5-63 (81)
51 1wig_A KIAA1808 protein; LIM d 99.6 1E-16 3.4E-21 96.2 3.3 55 95-149 6-61 (73)
52 2d8z_A Four and A half LIM dom 99.6 1.5E-16 5.1E-21 94.6 3.5 55 95-149 6-60 (70)
53 2d8y_A Eplin protein; LIM doma 99.6 2.9E-16 9.8E-21 98.1 4.7 56 94-149 15-71 (91)
54 2ehe_A Four and A half LIM dom 99.6 2.2E-16 7.4E-21 96.7 4.0 62 6-67 14-76 (82)
55 1x62_A C-terminal LIM domain p 99.6 1.3E-16 4.3E-21 97.2 2.7 56 94-149 15-70 (79)
56 2cuq_A Four and A half LIM dom 99.6 4.2E-16 1.4E-20 95.0 4.9 61 6-67 14-74 (80)
57 3f6q_B LIM and senescent cell 99.6 2.8E-16 9.7E-21 93.7 4.1 62 6-67 10-72 (72)
58 1wig_A KIAA1808 protein; LIM d 99.6 4.4E-16 1.5E-20 93.4 4.1 61 6-67 4-65 (73)
59 1b8t_A Protein (CRP1); LIM dom 99.6 6.1E-16 2.1E-20 109.0 5.5 63 5-67 113-175 (192)
60 1x61_A Thyroid receptor intera 99.6 3.6E-16 1.2E-20 93.4 3.4 56 94-149 5-62 (72)
61 2cor_A Pinch protein; LIM doma 99.6 6.4E-16 2.2E-20 94.0 4.2 62 5-68 13-74 (79)
62 1iml_A CRIP, cysteine rich int 99.6 4E-16 1.4E-20 94.2 3.2 55 95-149 1-57 (76)
63 2iyb_E Testin, TESS, TES; LIM 99.6 7.9E-16 2.7E-20 90.2 4.0 59 7-65 2-64 (65)
64 2l4z_A DNA endonuclease RBBP8, 99.6 8.4E-16 2.9E-20 101.0 4.5 61 7-67 61-123 (123)
65 2cor_A Pinch protein; LIM doma 99.6 5.4E-16 1.8E-20 94.4 3.3 55 94-149 15-69 (79)
66 1x4k_A Skeletal muscle LIM-pro 99.6 3.8E-16 1.3E-20 93.3 2.2 55 95-149 6-62 (72)
67 2iyb_E Testin, TESS, TES; LIM 99.6 5.3E-16 1.8E-20 90.9 2.5 55 95-149 3-62 (65)
68 1wyh_A SLIM 2, skeletal muscle 99.6 5.4E-16 1.8E-20 92.6 2.6 55 95-149 6-62 (72)
69 2egq_A FHL1 protein; LIM domai 99.6 1.9E-15 6.7E-20 91.3 4.5 60 6-65 14-77 (77)
70 1j2o_A FLIN2, fusion of rhombo 99.6 1.1E-15 3.9E-20 99.1 3.5 56 94-149 3-61 (114)
71 3f6q_B LIM and senescent cell 99.6 4.3E-16 1.5E-20 92.9 1.2 55 95-149 12-68 (72)
72 1g47_A Pinch protein; LIM doma 99.6 1.2E-15 3.9E-20 92.3 2.9 56 94-149 11-68 (77)
73 2l4z_A DNA endonuclease RBBP8, 99.6 2.2E-15 7.6E-20 99.0 4.3 56 94-149 61-119 (123)
74 2cup_A Skeletal muscle LIM-pro 99.5 2.2E-15 7.4E-20 95.7 3.5 57 94-150 5-63 (101)
75 1x6a_A LIMK-2, LIM domain kina 99.5 6.4E-15 2.2E-19 89.9 4.6 61 6-67 14-76 (81)
76 2l3k_A Rhombotin-2, linker, LI 99.5 1.8E-14 6.2E-19 94.6 6.9 68 7-74 8-77 (123)
77 2xqn_T Testin, TESS; metal-bin 99.5 3.6E-15 1.2E-19 98.3 2.4 55 95-149 4-59 (126)
78 2l3k_A Rhombotin-2, linker, LI 99.5 5.1E-15 1.8E-19 97.3 2.2 55 95-149 9-66 (123)
79 1m3v_A FLIN4, fusion of the LI 99.5 4.4E-15 1.5E-19 97.5 1.1 56 94-149 5-63 (122)
80 2jtn_A LIM domain-binding prot 99.4 2.2E-14 7.5E-19 100.2 2.7 55 94-149 60-115 (182)
81 2xjy_A Rhombotin-2; oncoprotei 99.4 4.4E-14 1.5E-18 93.6 2.7 55 95-149 3-60 (131)
82 1v6g_A Actin binding LIM prote 99.4 6.6E-14 2.3E-18 85.3 2.6 61 6-67 14-75 (81)
83 2rgt_A Fusion of LIM/homeobox 99.4 1.5E-13 5.1E-18 94.9 2.8 55 94-149 6-61 (169)
84 1rut_X Flinc4, fusion protein 99.3 7.2E-13 2.5E-17 93.0 4.7 61 9-69 71-133 (188)
85 1zfo_A LAsp-1; LIM domain, zin 98.6 1.7E-08 5.9E-13 49.9 1.8 27 95-121 4-31 (31)
86 1zfo_A LAsp-1; LIM domain, zin 98.5 2.9E-08 9.8E-13 49.1 1.1 29 7-35 3-31 (31)
87 2ysm_A Myeloid/lymphoid or mix 92.4 0.31 1.1E-05 30.5 5.3 75 6-122 6-85 (111)
88 4ap4_A E3 ubiquitin ligase RNF 88.2 0.26 8.8E-06 31.3 2.2 39 95-133 73-126 (133)
89 2ct0_A Non-SMC element 1 homol 84.0 0.38 1.3E-05 28.0 1.2 33 3-35 11-43 (74)
90 2kwj_A Zinc finger protein DPF 81.6 0.54 1.8E-05 29.6 1.3 28 95-122 59-89 (114)
91 4gne_A Histone-lysine N-methyl 81.3 4.5 0.00015 25.1 5.4 41 7-61 15-59 (107)
92 1jjd_A Metallothionein, SMTA; 80.6 0.77 2.6E-05 25.1 1.5 22 123-144 10-31 (55)
93 1weo_A Cellulose synthase, cat 78.4 2.5 8.5E-05 25.4 3.3 13 6-18 15-27 (93)
94 2xeu_A Ring finger protein 4; 77.7 0.95 3.3E-05 24.6 1.4 40 95-134 4-58 (64)
95 2ect_A Ring finger protein 126 77.0 5.1 0.00017 22.6 4.5 40 95-134 16-66 (78)
96 3ng2_A RNF4, snurf, ring finge 75.6 1.1 3.9E-05 24.9 1.4 40 95-134 11-65 (71)
97 1t1h_A Gspef-atpub14, armadill 74.0 3.9 0.00013 23.1 3.5 34 33-67 7-40 (78)
98 1x4j_A Ring finger protein 38; 71.7 2.6 9E-05 23.8 2.3 30 6-35 22-53 (75)
99 3nw0_A Non-structural maintena 71.3 1.9 6.4E-05 30.8 1.8 43 91-133 177-230 (238)
100 3vk6_A E3 ubiquitin-protein li 71.1 2 6.8E-05 26.4 1.7 64 37-130 4-71 (101)
101 2ea6_A Ring finger protein 4; 70.9 2.4 8.1E-05 23.3 1.9 37 95-131 16-67 (69)
102 2djb_A Polycomb group ring fin 70.8 4.1 0.00014 22.7 3.0 34 34-67 15-48 (72)
103 1jm7_B BARD1, BRCA1-associated 70.6 4.8 0.00016 24.9 3.5 33 34-67 22-55 (117)
104 2ecm_A Ring finger and CHY zin 69.3 3.4 0.00012 21.5 2.3 37 95-131 6-54 (55)
105 3nw0_A Non-structural maintena 68.9 1.8 6E-05 30.9 1.3 31 5-35 178-208 (238)
106 2y43_A E3 ubiquitin-protein li 68.4 4.5 0.00016 24.1 3.0 34 34-67 22-55 (99)
107 2yur_A Retinoblastoma-binding 68.4 4.6 0.00016 22.7 2.9 33 34-67 15-48 (74)
108 2gvi_A Conserved hypothetical 67.3 0.81 2.8E-05 31.9 -0.8 29 121-149 173-201 (204)
109 1chc_A Equine herpes virus-1 r 66.7 7.1 0.00024 21.3 3.4 30 37-66 8-37 (68)
110 2d8t_A Dactylidin, ring finger 65.7 6.7 0.00023 21.7 3.2 37 95-131 16-60 (71)
111 2kiz_A E3 ubiquitin-protein li 64.8 4.3 0.00015 22.3 2.2 37 95-131 15-62 (69)
112 2gvi_A Conserved hypothetical 64.1 1.4 4.9E-05 30.6 0.0 31 34-64 172-202 (204)
113 2dmj_A Poly (ADP-ribose) polym 64.0 2.3 7.7E-05 26.4 0.9 31 6-36 24-65 (106)
114 2ysl_A Tripartite motif-contai 62.7 4.9 0.00017 22.3 2.2 33 34-67 20-52 (73)
115 1v9x_A Poly (ADP-ribose) polym 61.0 3.2 0.00011 26.1 1.2 31 6-36 19-60 (114)
116 2ep4_A Ring finger protein 24; 59.4 8.3 0.00029 21.4 2.8 37 95-131 16-63 (74)
117 2vpb_A Hpygo1, pygopus homolog 59.3 3.3 0.00011 23.2 1.0 30 6-35 7-40 (65)
118 2ecy_A TNF receptor-associated 59.0 3.8 0.00013 22.4 1.2 38 95-132 16-62 (66)
119 2kre_A Ubiquitin conjugation f 58.6 12 0.00041 22.6 3.6 35 32-67 27-61 (100)
120 2e6s_A E3 ubiquitin-protein li 58.6 15 0.00052 21.1 3.9 45 96-149 28-76 (77)
121 3ztg_A E3 ubiquitin-protein li 58.1 7.7 0.00026 22.6 2.6 33 34-67 13-46 (92)
122 2ct2_A Tripartite motif protei 58.1 14 0.00046 21.1 3.7 39 95-133 16-69 (88)
123 1iym_A EL5; ring-H2 finger, ub 56.6 7.6 0.00026 20.1 2.2 31 6-36 4-37 (55)
124 2kr4_A Ubiquitin conjugation f 56.3 7.8 0.00027 22.6 2.4 35 32-67 12-46 (85)
125 1e4u_A Transcriptional repress 56.2 11 0.00036 21.7 2.9 32 35-66 12-46 (78)
126 4hc9_A Trans-acting T-cell-spe 56.2 13 0.00043 23.4 3.4 28 36-63 7-34 (115)
127 2cs3_A Protein C14ORF4, MY039 55.9 4 0.00014 24.0 1.0 30 35-64 16-48 (93)
128 2e5r_A Dystrobrevin alpha; ZZ 55.0 4.1 0.00014 22.7 0.9 14 95-108 12-26 (63)
129 1uw0_A DNA ligase III; DNA rep 54.9 4.7 0.00016 25.4 1.2 16 6-21 14-29 (117)
130 2eqg_A Tumor necrosis factor, 54.5 1.5 5.2E-05 22.5 -0.9 15 135-149 22-36 (49)
131 2ecv_A Tripartite motif-contai 53.9 14 0.0005 20.7 3.3 33 34-67 19-51 (85)
132 2ecn_A Ring finger protein 141 53.8 5.1 0.00017 22.1 1.2 27 7-35 15-41 (70)
133 1g25_A CDK-activating kinase a 53.2 12 0.00039 20.2 2.6 33 35-67 4-40 (65)
134 2ecl_A Ring-box protein 2; RNF 51.8 7.4 0.00025 22.4 1.7 39 6-44 14-74 (81)
135 2csy_A Zinc finger protein 183 51.7 12 0.00042 21.2 2.7 37 95-131 16-60 (81)
136 1wgm_A Ubiquitin conjugation f 51.2 14 0.00048 22.2 3.0 35 32-67 20-55 (98)
137 2jrp_A Putative cytoplasmic pr 50.9 8.9 0.0003 22.6 1.9 27 8-45 3-29 (81)
138 2ecw_A Tripartite motif-contai 50.5 12 0.00042 21.1 2.6 33 34-67 19-51 (85)
139 2ckl_A Polycomb group ring fin 50.4 10 0.00035 22.9 2.3 33 34-67 15-48 (108)
140 1jm7_A BRCA1, breast cancer ty 50.3 16 0.00054 22.0 3.2 32 35-67 22-53 (112)
141 2ckl_B Ubiquitin ligase protei 49.6 13 0.00045 24.3 2.9 34 34-67 54-87 (165)
142 1wen_A Inhibitor of growth fam 49.4 21 0.00073 20.1 3.4 42 95-148 17-63 (71)
143 3odc_A Poly [ADP-ribose] polym 49.3 3.8 0.00013 25.6 0.2 16 6-21 18-33 (111)
144 3od8_A Poly [ADP-ribose] polym 48.8 3.7 0.00013 25.9 0.1 16 6-21 37-52 (116)
145 1f62_A Transcription factor WS 48.6 12 0.0004 19.4 2.1 43 97-148 3-48 (51)
146 3lrq_A E3 ubiquitin-protein li 48.4 12 0.00042 22.3 2.4 33 35-67 23-55 (100)
147 2k16_A Transcription initiatio 45.9 17 0.00058 20.5 2.6 44 95-147 19-65 (75)
148 3fl2_A E3 ubiquitin-protein li 43.8 8.9 0.0003 23.9 1.3 38 95-132 53-99 (124)
149 1bor_A Transcription factor PM 43.4 20 0.00068 18.8 2.5 37 95-131 7-48 (56)
150 2c2l_A CHIP, carboxy terminus 43.3 24 0.00081 24.9 3.6 36 31-67 205-240 (281)
151 1weu_A Inhibitor of growth fam 43.0 26 0.0009 20.9 3.2 42 95-148 37-83 (91)
152 3hct_A TNF receptor-associated 42.4 8.6 0.0003 23.7 1.0 39 95-133 19-66 (118)
153 2d8s_A Cellular modulator of i 42.3 39 0.0013 19.4 3.9 38 95-132 16-70 (80)
154 4ayc_A E3 ubiquitin-protein li 42.1 10 0.00034 24.2 1.3 38 96-133 55-100 (138)
155 3j21_V 50S ribosomal protein L 41.7 13 0.00046 20.9 1.6 25 7-31 4-31 (66)
156 2fc7_A ZZZ3 protein; structure 41.7 16 0.00054 21.4 2.0 14 95-108 22-36 (82)
157 2ku3_A Bromodomain-containing 40.9 13 0.00046 21.0 1.6 50 6-66 15-68 (71)
158 1vq8_U 50S ribosomal protein L 40.9 12 0.00042 21.0 1.4 25 7-31 3-30 (66)
159 3v43_A Histone acetyltransfera 40.5 34 0.0012 20.9 3.6 45 95-148 62-110 (112)
160 2cs2_A Poly [ADP-ribose] polym 40.5 8.7 0.0003 24.8 0.8 16 6-21 26-41 (134)
161 2d8v_A Zinc finger FYVE domain 40.2 17 0.00058 20.4 1.9 17 50-66 23-39 (67)
162 2yql_A PHD finger protein 21A; 39.7 37 0.0013 17.9 3.3 45 95-150 10-56 (56)
163 2ysj_A Tripartite motif-contai 39.4 16 0.00055 19.4 1.8 33 34-67 20-52 (63)
164 2egp_A Tripartite motif-contai 39.4 13 0.00046 20.7 1.5 11 122-132 55-65 (79)
165 3hcs_A TNF receptor-associated 38.7 19 0.00065 23.6 2.4 33 34-67 18-50 (170)
166 1twf_L ABC10-alpha, DNA-direct 38.4 15 0.00052 20.8 1.6 26 95-129 29-54 (70)
167 2l0b_A E3 ubiquitin-protein li 38.2 16 0.00053 21.4 1.7 29 7-35 40-70 (91)
168 2vut_I AREA, nitrogen regulato 38.1 11 0.00037 19.3 0.8 10 138-147 19-28 (43)
169 2yu4_A E3 SUMO-protein ligase 35.9 27 0.00091 20.6 2.5 34 33-67 6-40 (94)
170 1znf_A 31ST zinc finger from X 35.5 17 0.00057 14.8 1.2 12 121-132 2-13 (27)
171 1gnf_A Transcription factor GA 35.5 18 0.00061 18.7 1.4 8 95-102 5-12 (46)
172 1z6u_A NP95-like ring finger p 35.4 15 0.00051 23.9 1.4 39 95-133 79-126 (150)
173 1v87_A Deltex protein 2; ring- 35.2 16 0.00054 22.2 1.4 21 112-132 61-94 (114)
174 1rmd_A RAG1; V(D)J recombinati 34.0 18 0.00062 22.0 1.6 33 34-67 23-55 (116)
175 1wfh_A Zinc finger (AN1-like) 33.1 30 0.001 19.3 2.1 25 37-61 18-42 (64)
176 1ard_A Yeast transcription fac 32.8 19 0.00064 14.8 1.1 12 121-132 3-14 (29)
177 2puy_A PHD finger protein 21A; 32.2 48 0.0016 17.7 2.9 49 7-67 5-55 (60)
178 2jny_A Uncharacterized BCR; st 31.7 19 0.00064 20.3 1.2 8 95-102 11-18 (67)
179 2jne_A Hypothetical protein YF 31.6 9.4 0.00032 23.3 -0.1 33 95-133 62-94 (101)
180 1wg2_A Zinc finger (AN1-like) 31.5 32 0.0011 19.2 2.1 22 39-60 20-41 (64)
181 2xb1_A Pygopus homolog 2, B-ce 31.5 30 0.001 21.1 2.2 52 7-65 3-62 (105)
182 3d00_A Tungsten formylmethanof 31.3 7.8 0.00027 26.6 -0.6 25 119-149 162-186 (191)
183 2hf1_A Tetraacyldisaccharide-1 31.3 19 0.00066 20.3 1.2 8 95-102 9-16 (68)
184 4av1_A Poly [ADP-ribose] polym 31.3 10 0.00035 26.8 0.0 33 6-38 142-187 (223)
185 2kvh_A Zinc finger and BTB dom 31.2 17 0.00057 14.9 0.8 11 121-131 4-14 (27)
186 1pft_A TFIIB, PFTFIIBN; N-term 31.1 18 0.00063 18.6 1.0 12 121-132 25-36 (50)
187 1paa_A Yeast transcription fac 31.0 23 0.00078 14.7 1.3 12 121-132 3-14 (30)
188 2das_A Zinc finger MYM-type pr 31.0 27 0.00093 19.2 1.7 8 95-102 21-28 (62)
189 2jr6_A UPF0434 protein NMA0874 30.9 20 0.0007 20.2 1.2 8 95-102 9-16 (68)
190 2js4_A UPF0434 protein BB2007; 30.6 19 0.00067 20.4 1.1 28 95-130 9-36 (70)
191 3l11_A E3 ubiquitin-protein li 30.5 20 0.00068 21.8 1.3 37 95-131 16-61 (115)
192 2m0e_A Zinc finger and BTB dom 29.9 23 0.00079 14.4 1.2 11 121-131 3-13 (29)
193 3asl_A E3 ubiquitin-protein li 29.7 32 0.0011 19.3 2.0 44 96-148 20-67 (70)
194 2lri_C Autoimmune regulator; Z 29.2 42 0.0014 18.6 2.4 25 95-121 13-39 (66)
195 2f42_A STIP1 homology and U-bo 28.5 42 0.0014 22.7 2.7 35 32-67 104-138 (179)
196 2pk7_A Uncharacterized protein 28.4 21 0.00073 20.1 1.1 8 95-102 9-16 (69)
197 2lo3_A SAGA-associated factor 28.2 21 0.00073 18.1 0.9 14 8-21 18-31 (44)
198 2l5u_A Chromodomain-helicase-D 28.2 73 0.0025 17.1 3.3 43 95-148 12-56 (61)
199 2lvu_A Zinc finger and BTB dom 34.0 13 0.00043 15.2 0.0 11 121-131 3-13 (26)
200 1rik_A E6APC1 peptide; E6-bind 27.8 22 0.00076 14.6 0.9 12 121-132 3-14 (29)
201 2kvf_A Zinc finger and BTB dom 27.5 20 0.0007 14.7 0.7 12 121-132 4-15 (28)
202 3dfx_A Trans-acting T-cell-spe 27.3 21 0.00072 19.8 0.9 8 95-102 8-15 (63)
203 1wil_A KIAA1045 protein; ring 27.2 14 0.00047 22.0 0.1 29 95-123 16-46 (89)
204 1klr_A Zinc finger Y-chromosom 27.2 27 0.00093 14.3 1.2 12 121-132 3-14 (30)
205 2m0f_A Zinc finger and BTB dom 27.0 21 0.00071 14.6 0.7 11 121-131 3-13 (29)
206 3iz5_Z 60S ribosomal protein L 26.9 32 0.0011 22.9 1.8 26 6-31 4-32 (162)
207 1wfp_A Zinc finger (AN1-like) 26.8 46 0.0016 19.1 2.2 26 36-61 27-52 (74)
208 4a17_T RPL24, 60S ribosomal pr 26.7 30 0.001 23.0 1.6 25 7-31 5-32 (158)
209 2kvg_A Zinc finger and BTB dom 25.9 20 0.00069 14.7 0.5 11 121-131 4-14 (27)
210 2lbz_A Thuricin17, thurincin H 25.3 25 0.00087 15.9 0.8 13 118-130 5-17 (31)
211 3htk_C E3 SUMO-protein ligase 25.0 55 0.0019 23.7 2.9 34 33-67 180-214 (267)
212 4gat_A Nitrogen regulatory pro 24.9 23 0.00078 19.9 0.7 9 94-102 9-17 (66)
213 1wfl_A Zinc finger protein 216 24.8 37 0.0013 19.5 1.6 25 37-61 28-52 (74)
214 1xwh_A Autoimmune regulator; P 24.7 93 0.0032 16.9 3.4 49 6-66 7-57 (66)
215 3izc_Z 60S ribosomal protein R 24.4 30 0.001 22.9 1.3 25 7-31 3-30 (155)
216 2m0d_A Zinc finger and BTB dom 24.4 24 0.00083 14.4 0.7 11 121-131 4-14 (30)
217 2lvr_A Zinc finger and BTB dom 29.5 17 0.00057 15.2 0.0 11 121-131 4-14 (30)
218 2yt5_A Metal-response element- 23.6 76 0.0026 17.1 2.8 47 95-147 7-58 (66)
219 2zkr_u 60S ribosomal protein L 23.5 32 0.0011 22.8 1.3 25 7-31 3-30 (157)
220 2i5o_A DNA polymerase ETA; zin 23.1 12 0.00041 18.7 -0.6 8 95-102 10-17 (39)
221 1p7a_A BF3, BKLF, kruppel-like 23.0 33 0.0011 15.2 1.0 11 121-131 12-22 (37)
222 2elr_A Zinc finger protein 406 22.9 35 0.0012 14.9 1.1 12 121-132 10-21 (36)
223 1ffk_W Ribosomal protein L37AE 22.6 59 0.002 18.6 2.2 34 95-137 28-62 (73)
224 2ecj_A Tripartite motif-contai 22.3 50 0.0017 16.8 1.8 27 95-121 16-42 (58)
225 2lvt_A Zinc finger and BTB dom 27.9 19 0.00064 15.0 0.0 11 121-131 3-13 (29)
226 2elx_A Zinc finger protein 406 22.2 29 0.001 15.1 0.8 12 121-132 8-19 (35)
227 2kfq_A FP1; protein, de novo p 21.9 27 0.00092 15.1 0.6 11 121-131 3-13 (32)
228 3c6w_A P28ING5, inhibitor of g 21.6 46 0.0016 17.9 1.6 27 95-122 10-41 (59)
229 2yrc_A Protein transport prote 21.5 68 0.0023 17.4 2.2 33 5-42 7-41 (59)
230 1srk_A Zinc finger protein ZFP 21.4 31 0.0011 15.0 0.8 12 121-132 8-19 (35)
231 1rim_A E6APC2 peptide; E6-bind 21.4 37 0.0013 14.8 1.0 12 121-132 3-14 (33)
232 1fv5_A First zinc finger of U- 21.2 32 0.0011 16.3 0.8 13 120-132 8-20 (36)
233 2ds5_A CLPX, ATP-dependent CLP 20.9 34 0.0012 18.1 0.9 7 96-102 13-19 (51)
234 3knv_A TNF receptor-associated 20.9 25 0.00086 22.5 0.4 34 33-67 30-63 (141)
235 4ayb_P DNA-directed RNA polyme 20.6 98 0.0034 16.1 2.6 11 95-105 24-35 (48)
236 2g6q_A Inhibitor of growth pro 20.4 50 0.0017 18.0 1.6 42 95-148 12-58 (62)
237 3shb_A E3 ubiquitin-protein li 20.4 63 0.0022 18.5 2.1 27 96-122 28-57 (77)
238 2elp_A Zinc finger protein 406 20.2 37 0.0013 15.1 0.9 13 120-132 9-21 (37)
239 2e6r_A Jumonji/ARID domain-con 20.1 79 0.0027 18.6 2.5 28 95-122 17-47 (92)
No 1
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.98 E-value=4.1e-33 Score=197.31 Aligned_cols=148 Identities=28% Similarity=0.522 Sum_probs=121.0
Q ss_pred CCCCCCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhcccccc-CCCCCCC
Q 042895 1 MSFIGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNF-NKNFQLP 79 (150)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~-~~~~~~~ 79 (150)
|+..++.++|.+|+++|.+++.+.++++.||++||+|..|+++|....|+.++|++||+.||.+++++++.. ....+..
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~ 80 (192)
T 1b8t_A 1 MPNWGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTL 80 (192)
T ss_dssp CCCCCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCC
T ss_pred CCCCCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccE
Confidence 888999999999999998888889999999999999999999999988999999999999999999987531 1000000
Q ss_pred ----------------CCCC-----ccccccCCCCCCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccc
Q 042895 80 ----------------AKSP-----SKVASMFSGPNKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAA 137 (150)
Q Consensus 80 ----------------~~~~-----~~~~~~~~~~~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 137 (150)
+..| ...... .++.++|++|++ |.+++.|.++++.||++||+|..|+++|.++.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 81 STDKGESLGIKYEEGQSHRPTNPNASRMAQK-VGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred ecCCCcccccccccccccCCCCcCccccccc-cCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc
Confidence 0011 011111 133578999999 76788899999999999999999999998888999
Q ss_pred cCCccccccccC
Q 042895 138 LEGILYCKHNFS 149 (150)
Q Consensus 138 ~~g~~yC~~cy~ 149 (150)
.+|++||+.||.
T Consensus 160 ~~g~~yC~~cy~ 171 (192)
T 1b8t_A 160 KDGEIYCKGCYA 171 (192)
T ss_dssp ETTEEEEHHHHH
T ss_pred cCCEEeCHHHHH
Confidence 999999999984
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.97 E-value=1.5e-32 Score=182.40 Aligned_cols=116 Identities=19% Similarity=0.404 Sum_probs=106.7
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccccccCCCCCCCCCCCcc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSK 85 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~ 85 (150)
..++|++|+++|.+++.+.++++.||++||+|..|+++|....|+.++|++||+.||.++++
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------------------ 63 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------------------ 63 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC------------------
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC------------------
Confidence 35789999999997788999999999999999999999998889999999999999999998
Q ss_pred ccccCCCCCCcCCcccc-eec-cceeeeCCcccc--ccccccccCCcccCCCCccccCCcccccccc
Q 042895 86 VASMFSGPNKNVLLAVK-QCP-WEKVAAESQASH--KTCFKCSYAGYSISPSNYAALEGILYCKHNF 148 (150)
Q Consensus 86 ~~~~~~~~~~~C~~C~~-i~~-~~~v~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy 148 (150)
++|++|++ |.+ +..|.++++.|| ++||+|..|+++|.+..|++.+|++||+.+|
T Consensus 64 ---------~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~~~~~~yC~~~~ 121 (126)
T 2xqn_T 64 ---------VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVEC 121 (126)
T ss_dssp ---------CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEEETTEEESSHHH
T ss_pred ---------ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEeECCEEcchHHh
Confidence 89999999 554 356899999999 9999999999999988899999999999665
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.97 E-value=5.6e-32 Score=180.68 Aligned_cols=116 Identities=17% Similarity=0.365 Sum_probs=104.3
Q ss_pred cccccccCceeeccceEEeCCcccccCCcccccccccCCC--CCccccCCeeecCchhhhhhccccccCCCCCCCCCCCc
Q 042895 7 QQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKL--SNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSPS 84 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~ 84 (150)
.++|++|+++|.+.+.+.++++.||++||+|..|+.+|.. ..|+.++|++||+.||.++++
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~----------------- 64 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG----------------- 64 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-----------------
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-----------------
Confidence 4689999999986667899999999999999999999964 568999999999999999998
Q ss_pred cccccCCCCCC--cCCcccc-eeccc-eeeeCCccccccccccccCCccc-CCCCccccCCccccccccC
Q 042895 85 KVASMFSGPNK--NVLLAVK-QCPWE-KVAAESQASHKTCFKCSYAGYSI-SPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 85 ~~~~~~~~~~~--~C~~C~~-i~~~~-~v~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~g~~yC~~cy~ 149 (150)
+ +|.+|++ |...+ .|.++++.||++||+|..|+++| .+..|++.+|++||..||.
T Consensus 65 ----------~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~ 124 (131)
T 2xjy_A 65 ----------QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 124 (131)
T ss_dssp ----------CCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHH
T ss_pred ----------CccChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHH
Confidence 6 8999999 55444 57899999999999999999999 4667999999999999985
No 4
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.97 E-value=4.5e-31 Score=186.26 Aligned_cols=118 Identities=20% Similarity=0.457 Sum_probs=105.6
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCC--CCccccCCeeecCchhhhhhccccccCCCCCCCCCCC
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKL--SNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSP 83 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (150)
..++|++|+++|.+.+++.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~---------------- 67 (188)
T 1rut_X 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG---------------- 67 (188)
T ss_dssp CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS----------------
T ss_pred CCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc----------------
Confidence 45789999999996667899999999999999999999986 578999999999999999998
Q ss_pred ccccccCCCCCC--cCCcccc-eeccc-eeeeCCccccccccccccCCcccC-CCCccccCCccccccccCC
Q 042895 84 SKVASMFSGPNK--NVLLAVK-QCPWE-KVAAESQASHKTCFKCSYAGYSIS-PSNYAALEGILYCKHNFSQ 150 (150)
Q Consensus 84 ~~~~~~~~~~~~--~C~~C~~-i~~~~-~v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~cy~~ 150 (150)
+ +|.+|++ |...+ .|.++++.||++||+|..|+++|. +..|+..++++||+.||.+
T Consensus 68 -----------~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~ 128 (188)
T 1rut_X 68 -----------NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPT 128 (188)
T ss_dssp -----------CCEECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCT
T ss_pred -----------cCCccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHH
Confidence 5 7999999 65555 478999999999999999999995 5678899999999999963
No 5
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.96 E-value=2.8e-30 Score=179.40 Aligned_cols=117 Identities=21% Similarity=0.358 Sum_probs=101.7
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccccccCCCCCCCCCCCc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSPS 84 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~ 84 (150)
.+.++|.+|+++|.+.+++.++++.||++||+|..|+++|.... +.++|++||+.||.++++
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~----------------- 65 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFG----------------- 65 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHS-----------------
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeeccccccccc-----------------
Confidence 35679999999999766789999999999999999999998766 478999999999999998
Q ss_pred cccccCCCCCCcCCcccc-eeccce-eeeCCccccccccccccCCcccC-CCCcc-ccCCccccccccC
Q 042895 85 KVASMFSGPNKNVLLAVK-QCPWEK-VAAESQASHKTCFKCSYAGYSIS-PSNYA-ALEGILYCKHNFS 149 (150)
Q Consensus 85 ~~~~~~~~~~~~C~~C~~-i~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~yC~~cy~ 149 (150)
++|.+|++ |...+. +.++++.||++||+|..|+++|. +..|+ ..||++||+.||.
T Consensus 66 ----------~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~ 124 (169)
T 2rgt_A 66 ----------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 124 (169)
T ss_dssp ----------CBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHH
T ss_pred ----------ccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHH
Confidence 89999999 666565 57999999999999999999996 55665 4699999999984
No 6
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.96 E-value=5.5e-30 Score=179.83 Aligned_cols=118 Identities=20% Similarity=0.376 Sum_probs=103.7
Q ss_pred CCCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccccccCCCCCCCCCCC
Q 042895 4 IGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSP 83 (150)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (150)
..+.++|.+|+++|...+++.++++.||++||+|..|+++|....| .++|++||+.||.++++
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---------------- 119 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---------------- 119 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS----------------
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccc----------------
Confidence 4556899999999997667899999999999999999999987665 78999999999999998
Q ss_pred ccccccCCCCCCcCCcccc-eeccce-eeeCCccccccccccccCCcccC-CCCcc-ccCCccccccccC
Q 042895 84 SKVASMFSGPNKNVLLAVK-QCPWEK-VAAESQASHKTCFKCSYAGYSIS-PSNYA-ALEGILYCKHNFS 149 (150)
Q Consensus 84 ~~~~~~~~~~~~~C~~C~~-i~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~-~~~g~~yC~~cy~ 149 (150)
++|.+|++ |.+.+. +.+.++.||++||+|..|+++|. +..|+ ..+|++||+.||.
T Consensus 120 -----------~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~ 178 (182)
T 2jtn_A 120 -----------TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYE 178 (182)
T ss_dssp -----------CCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHH
T ss_pred -----------cccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHH
Confidence 89999999 655554 58999999999999999999996 45565 4689999999984
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.94 E-value=1.6e-27 Score=152.25 Aligned_cols=96 Identities=18% Similarity=0.404 Sum_probs=87.0
Q ss_pred CCcccccccCceeec-cceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccccccCCCCCCCCCCC
Q 042895 5 GTQQKCKVCEKTVCP-VEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSP 83 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (150)
.+.++|.+|+++|.+ ++.+.++++.||.+||+|..|+++|....|+..+|++||+.||.++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~---------------- 66 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDS---------------- 66 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCC----------------
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcC----------------
Confidence 356789999999975 668899999999999999999999988789999999999999999998
Q ss_pred ccccccCCCCCCcCCcccc-eecc-ceeeeCCccccccccccccCC
Q 042895 84 SKVASMFSGPNKNVLLAVK-QCPW-EKVAAESQASHKTCFKCSYAG 127 (150)
Q Consensus 84 ~~~~~~~~~~~~~C~~C~~-i~~~-~~v~~~~~~~H~~Cf~C~~C~ 127 (150)
++|.+|++ |.++ ..|.++++.||++||+|..|+
T Consensus 67 -----------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 67 -----------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp -----------CBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred -----------CccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 89999999 5545 468999999999999999985
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.91 E-value=2.1e-25 Score=147.09 Aligned_cols=106 Identities=15% Similarity=0.264 Sum_probs=91.9
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCC--CCccccCCeeecCchhhhhhccccccCCCCCCCCCC
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKL--SNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKS 82 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 82 (150)
...++|++|+++|.+.+++.++++.||++||+|..|+.+|.. ..|+.++|++||..||.++|+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~--------------- 67 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG--------------- 67 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC---------------
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC---------------
Confidence 356789999999997767899999999999999999999973 568999999999999999998
Q ss_pred CccccccCCCCCC--cCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccCC
Q 042895 83 PSKVASMFSGPNK--NVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFSQ 150 (150)
Q Consensus 83 ~~~~~~~~~~~~~--~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~~ 150 (150)
+ +|++|+++|.+..+.+.++ ..|.++.|++++++|||..||.|
T Consensus 68 ------------~~~~C~~C~~~I~~~~~~~~g~-------------~~l~g~~f~~~~~~~yC~~~~~~ 112 (122)
T 1m3v_A 68 ------------NSGAGGSGGHMGSGGDVMVVGE-------------PTLMGGEFGDEDERLITRLENTQ 112 (122)
T ss_dssp ------------CCCSSSCSSCCSCCEESSSSSS-------------SSCCSCTTCCTTCCCCEECTTTT
T ss_pred ------------CCCccccCCCCcCchheEEcCC-------------cCCCCCccEecCCEeEccCcchh
Confidence 6 8999999555555666663 35788999999999999999975
No 9
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.88 E-value=7.4e-23 Score=133.35 Aligned_cols=101 Identities=15% Similarity=0.263 Sum_probs=84.8
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCC--CCccccCCeeecCchhhhhhccccccCCCCCCCCCC
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKL--SNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKS 82 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~ 82 (150)
++.++|++|+++|.+.+.+.++++.||++||+|..|+++|.. ..|+.++|++||+.||.++|+
T Consensus 1 g~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~--------------- 65 (114)
T 1j2o_A 1 GSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG--------------- 65 (114)
T ss_dssp CCCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT---------------
T ss_pred CcCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC---------------
Confidence 457899999999996668999999999999999999999975 479999999999999999998
Q ss_pred CccccccCCCCCCcCCcccceeccceeeeCCccccccccccccCCcc-cCCCCccccCCccccccccCC
Q 042895 83 PSKVASMFSGPNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYS-ISPSNYAALEGILYCKHNFSQ 150 (150)
Q Consensus 83 ~~~~~~~~~~~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~-l~~~~~~~~~g~~yC~~cy~~ 150 (150)
++|..|.. ++++. |+++ |.++.|++.+++|||..||.|
T Consensus 66 ------------~~c~~c~~---~~~~~---------------~~~~~~~g~~f~~~~~~~~C~~~~~~ 104 (114)
T 1j2o_A 66 ------------SGGHMGSG---GDVMV---------------VGEPTLMGGEFGDEDERLITRLENTQ 104 (114)
T ss_dssp ------------SCCSSCBS---CSCCC---------------SSCSSTTSSBCCCSSSCCCEEEECTT
T ss_pred ------------cccCcCCC---CceeE---------------cCCccCCCCeeEEcCCEeecchhhhc
Confidence 78877753 22221 3344 577899999999999999975
No 10
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-21 Score=117.78 Aligned_cols=71 Identities=13% Similarity=0.287 Sum_probs=64.4
Q ss_pred CCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccc-eec-cceeeeCCccccccccccccCCccc
Q 042895 53 EGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVK-QCP-WEKVAAESQASHKTCFKCSYAGYSI 130 (150)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~-i~~-~~~v~~~~~~~H~~Cf~C~~C~~~l 130 (150)
+|++||+.||.++++ ++|++|++ |.+ +..|.++++.||++||+|..|+++|
T Consensus 1 ~g~~yC~~~y~~~~~---------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L 53 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA---------------------------NTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSL 53 (82)
T ss_dssp CCCCCCCCCCCCCCS---------------------------CBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBC
T ss_pred CCceechhHhCcccC---------------------------CcCccCCCccccCcEEEEeCCccccccCCeecCCCCcc
Confidence 588999999999998 89999999 553 5667899999999999999999999
Q ss_pred CCCCccccCCccccccccCC
Q 042895 131 SPSNYAALEGILYCKHNFSQ 150 (150)
Q Consensus 131 ~~~~~~~~~g~~yC~~cy~~ 150 (150)
.+..|+..+|+|||+.||.+
T Consensus 54 ~~~~f~~~~~~~~C~~c~~~ 73 (82)
T 2ehe_A 54 ADEPFTCQDSELLCNDCYCS 73 (82)
T ss_dssp SSCCEEEETTEEEETTTSSC
T ss_pred CCCccEeeCCEEECHHHHhh
Confidence 88899999999999999964
No 11
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.82 E-value=6e-21 Score=117.02 Aligned_cols=67 Identities=28% Similarity=0.647 Sum_probs=57.8
Q ss_pred CCCCCCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 1 MSFIGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
|+|.++.++|.+|+++|.+++.+.++++.||++||+|..|+++|....|+..++++||+.||.++++
T Consensus 1 m~~~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 1 MPNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp -------CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC
T ss_pred CCCCCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhC
Confidence 8999999999999999988888999999999999999999999988889999999999999999998
No 12
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-21 Score=118.44 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=63.6
Q ss_pred CCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccc-eec----cceeeeCCccccccccccccCC
Q 042895 53 EGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVK-QCP----WEKVAAESQASHKTCFKCSYAG 127 (150)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~-i~~----~~~v~~~~~~~H~~Cf~C~~C~ 127 (150)
++++||+.||.++++ ++|++|++ |.+ .+.|.++++.||++||+|..|+
T Consensus 1 g~~~yC~~cy~~~~~---------------------------~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~ 53 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA---------------------------KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCS 53 (77)
T ss_dssp CCSSCCTTCCCSCCC---------------------------CCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSC
T ss_pred CCCeEchhHhchhhC---------------------------ccCcccCCcccCCCCCceeEEECcceeCcccCEehhcC
Confidence 468999999999998 89999999 552 3789999999999999999999
Q ss_pred cccCCCCccccCCccccccccC
Q 042895 128 YSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 128 ~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++|.+..|++.+|+|||+.||.
T Consensus 54 ~~L~~~~f~~~~~~~yC~~cy~ 75 (77)
T 2egq_A 54 VNLANKRFVFHQEQVYCPDCAK 75 (77)
T ss_dssp CBCTTSCCCEETTEECCHHHHH
T ss_pred CCCCCCccEeECCEEEChHHhc
Confidence 9998888999999999999985
No 13
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.81 E-value=6.2e-21 Score=116.64 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=64.4
Q ss_pred CCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccceeccceeeeCCccccccccccccCCcccCC
Q 042895 53 EGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISP 132 (150)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~ 132 (150)
+|++||+.||.++++ ++|++|+++|.++.|.++++.||++||+|..|+++|.+
T Consensus 1 gg~~yC~~cy~~~~~---------------------------~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA---------------------------PRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAG 53 (80)
T ss_dssp CCCCSCCCCCCCCSS---------------------------CCCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTT
T ss_pred CCcEEcHHHHccccC---------------------------CcCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCC
Confidence 578999999999987 89999999556678999999999999999999999988
Q ss_pred CCccccCCccccccccC
Q 042895 133 SNYAALEGILYCKHNFS 149 (150)
Q Consensus 133 ~~~~~~~g~~yC~~cy~ 149 (150)
..|++.++++||+.||.
T Consensus 54 ~~~~~~~~~~yC~~cy~ 70 (80)
T 2cuq_A 54 QQFTSRDEDPYCVACFG 70 (80)
T ss_dssp CCEEECSSSEEEHHHHH
T ss_pred CeeEeECCEEECHHHHH
Confidence 88999999999999984
No 14
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.80 E-value=1.1e-20 Score=115.61 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccceeccceeeeCCccccccccccccCCcccCC
Q 042895 53 EGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISP 132 (150)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~ 132 (150)
+|++||+.||.++++ ++|++|+++|.++.|.++++.||++||+|..|+++|.+
T Consensus 1 gg~~yC~~~y~~~~~---------------------------~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 53 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS---------------------------PKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFST 53 (80)
T ss_dssp CCCCCCCCCCCCCCS---------------------------CBCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCS
T ss_pred CCCccchhHHhhhcC---------------------------CccccCCCeecceeEEECCCeEecCcCChhhCCCCCCC
Confidence 478999999999987 89999999555688999999999999999999999988
Q ss_pred CCccccCCccccccccC
Q 042895 133 SNYAALEGILYCKHNFS 149 (150)
Q Consensus 133 ~~~~~~~g~~yC~~cy~ 149 (150)
+.|+..+|+|||+.||.
T Consensus 54 ~~~~~~~~~~yC~~~y~ 70 (80)
T 1x3h_A 54 GSFFELDGRPFCELHYH 70 (80)
T ss_dssp SCCEESSSCEECHHHHH
T ss_pred CcEEeECCEEECHHHHH
Confidence 88999999999999984
No 15
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=7e-20 Score=112.22 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccceeccceeeeCCccccccccccccCCcccCC
Q 042895 53 EGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISP 132 (150)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~ 132 (150)
+|++||+.||. +++ ++|++|+++|.++.|.++++.||++||+|..|+++|.+
T Consensus 2 ~g~~yC~~~y~-~~~---------------------------~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATL---------------------------EKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDG 53 (81)
T ss_dssp CCCCCCCCCCC-SSC---------------------------CBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTT
T ss_pred cCCEECHHHhh-cCC---------------------------CccccCCCeecceeEEECCccccHHhcCcccCCCccCC
Confidence 68999999998 565 89999999555778999999999999999999999988
Q ss_pred CCcccc-CCccccccccC
Q 042895 133 SNYAAL-EGILYCKHNFS 149 (150)
Q Consensus 133 ~~~~~~-~g~~yC~~cy~ 149 (150)
..|... +|+|||+.||.
T Consensus 54 ~~f~~~~~g~~yC~~cy~ 71 (81)
T 2dlo_A 54 IPFTVDATSQIHCIEDFH 71 (81)
T ss_dssp SCEECCTTCCCEEHHHHH
T ss_pred CeeEECCCCEEECHHHHH
Confidence 788876 79999999984
No 16
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=6.6e-20 Score=112.55 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=63.1
Q ss_pred CCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccc-eeccc-eeeeCCccccccccccccCCccc
Q 042895 53 EGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVK-QCPWE-KVAAESQASHKTCFKCSYAGYSI 130 (150)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~-i~~~~-~v~~~~~~~H~~Cf~C~~C~~~l 130 (150)
++.+||+.||.++++ ++|++|++ |.+++ .|.++++.||++||+|..|+++|
T Consensus 1 ~~~~yC~~cy~~~~~---------------------------~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L 53 (82)
T 1x63_A 1 GSSGSSGKCTTREDS---------------------------PKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVI 53 (82)
T ss_dssp CCSCCCCCCCSCCCS---------------------------CBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCC
T ss_pred CCCcCchhHHccccC---------------------------CcCccCCcccccCceEEEECccccccccCchhhCCCcc
Confidence 367999999999887 89999999 66554 58999999999999999999999
Q ss_pred CCCCccccCCccccccccC
Q 042895 131 SPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 131 ~~~~~~~~~g~~yC~~cy~ 149 (150)
..+.|+..++++||+.||.
T Consensus 54 ~~~~~~~~~~~~yC~~cy~ 72 (82)
T 1x63_A 54 GTGSFFPKGEDFYCVTCHE 72 (82)
T ss_dssp TTSCEEEETTEEEEHHHHH
T ss_pred CCCccEeeCCEEECHHHHH
Confidence 8889999999999999984
No 17
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.77 E-value=7.8e-19 Score=106.26 Aligned_cols=67 Identities=34% Similarity=0.668 Sum_probs=63.0
Q ss_pred CCCCCCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecC-chhhhhhc
Q 042895 1 MSFIGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCK-PHFEQLLK 67 (150)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~c~~~~~~ 67 (150)
|.|....++|.+|+++|.+++.+.++++.||++||+|..|+++|....|+.+++++||. .||.++++
T Consensus 3 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~ 70 (76)
T 2cu8_A 3 SGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFG 70 (76)
T ss_dssp CSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSC
T ss_pred cccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcc
Confidence 56788899999999999988889999999999999999999999988899999999999 79999998
No 18
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1e-19 Score=111.42 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccceeccceeeeCCccccccccccccCCcccC-
Q 042895 53 EGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSIS- 131 (150)
Q Consensus 53 ~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~- 131 (150)
.+.+||+.||.++++ ++|++|+++|.++.|.++++.||++||+|..|+++|.
T Consensus 1 g~~~yC~~~y~~~~~---------------------------~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 53 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFG---------------------------EFCHGCSLLMTGPFMVAGEFKYHPECFACMSCKVIIED 53 (81)
T ss_dssp CCCCCCCCCSSCCSS---------------------------CBCTTTCCBCCSCCBCCTTCCBCTTSCBCTTTCCBCCT
T ss_pred CCCccchhHHhhhcC---------------------------CcCccCCCCcCceEEEECCceeccccCCccCCCCccCC
Confidence 367999999999998 8999999955588899999999999999999999995
Q ss_pred CCCcc-ccCCccccccccC
Q 042895 132 PSNYA-ALEGILYCKHNFS 149 (150)
Q Consensus 132 ~~~~~-~~~g~~yC~~cy~ 149 (150)
+..|. +.+|+|||+.||.
T Consensus 54 g~~f~~~~~~~~~C~~c~~ 72 (81)
T 1x6a_A 54 GDAYALVQHATLYCGKCHN 72 (81)
T ss_dssp TSCEEECSSSCEEEHHHHH
T ss_pred CCcEEEeeCCEEECHHHHH
Confidence 56777 5899999999984
No 19
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=1.9e-18 Score=104.48 Aligned_cols=60 Identities=32% Similarity=0.737 Sum_probs=56.8
Q ss_pred ccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecC-chhhhhhc
Q 042895 8 QKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCK-PHFEQLLK 67 (150)
Q Consensus 8 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~c~~~~~~ 67 (150)
++|.+|+++|.+++.+.++++.||++||+|..|+++|..+.|+..+|++||. .||.++++
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC
Confidence 5799999999988889999999999999999999999988899999999999 69999998
No 20
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.74 E-value=3.4e-18 Score=106.87 Aligned_cols=76 Identities=43% Similarity=0.932 Sum_probs=68.1
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccccccCCCCCCCCC
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAK 81 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~ 81 (150)
+.++|.+|+++|.+.+.+.++++.||.+||+|..|+++|....|+..++++||+.||.+++++++++.+.++.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g~~~~ 89 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGSGPS 89 (91)
T ss_dssp SSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCCCCCC
T ss_pred CCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcCCCCC
Confidence 5679999999999878889999999999999999999999888999999999999999999987777777665543
No 21
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=9.2e-19 Score=107.19 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=60.7
Q ss_pred CeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccceeccceeeeCCccccccccccccCCcccCCC
Q 042895 54 GVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPS 133 (150)
Q Consensus 54 g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~ 133 (150)
+.+||+.||.++++ ++|++|+++|.++.|.++++.||++||+|..|+++|..+
T Consensus 2 ~~~yC~~dy~~~~~---------------------------~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~ 54 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG---------------------------TRCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPG 54 (81)
T ss_dssp CCCCCCSCGGGSCC---------------------------CBCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSS
T ss_pred CCCcchHHHHhHhC---------------------------CcCccccCEeccceEEECCceeCccCCccccCCCCCCCC
Confidence 46899999999998 899999995557889999999999999999999999766
Q ss_pred CccccCCc-cccccccCC
Q 042895 134 NYAALEGI-LYCKHNFSQ 150 (150)
Q Consensus 134 ~~~~~~g~-~yC~~cy~~ 150 (150)
.++..++. +||..||.+
T Consensus 55 ~~~~~~~~~~~C~~C~~~ 72 (81)
T 1v6g_A 55 DRVTFNGKECMCQKCSLP 72 (81)
T ss_dssp SCEEEETTEEEEHHHHSC
T ss_pred CEEEeCCCCEEChhhhcc
Confidence 66666554 699999863
No 22
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=8.8e-18 Score=102.60 Aligned_cols=63 Identities=29% Similarity=0.584 Sum_probs=58.2
Q ss_pred CCCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 4 IGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..+.++|.+|+++|.+++.+.++++.||++||+|..|+++|.. .|+.++|++||+.||.++|+
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg 74 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFG 74 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcC
Confidence 3467899999999988888999999999999999999999974 68899999999999999998
No 23
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.9e-17 Score=101.53 Aligned_cols=59 Identities=22% Similarity=0.524 Sum_probs=52.8
Q ss_pred CCCCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCcc--ccCCccccccccCC
Q 042895 92 GPNKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYA--ALEGILYCKHNFSQ 150 (150)
Q Consensus 92 ~~~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~g~~yC~~cy~~ 150 (150)
++..+|.+|++ |..++.|.++++.||++||+|..|+++|....|. ++||++||+.||.+
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHh
Confidence 34589999999 7788899999999999999999999999888887 47999999999964
No 24
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.5e-17 Score=100.76 Aligned_cols=67 Identities=27% Similarity=0.670 Sum_probs=60.3
Q ss_pred CCCCCCcccccccCceeeccc-eEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 1 MSFIGTQQKCKVCEKTVCPVE-QLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 1 ~~~~~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
|+.....++|++|+++|.+.+ .+.++++.||.+||+|..|+++|..+.|+..+|++||+.||.++++
T Consensus 5 ~~~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 72 (77)
T 1g47_A 5 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (77)
T ss_dssp CCSCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCC
T ss_pred hccCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhh
Confidence 345567789999999998655 6789999999999999999999998889999999999999999998
No 25
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.6e-17 Score=100.39 Aligned_cols=62 Identities=16% Similarity=0.463 Sum_probs=57.0
Q ss_pred CcccccccCceeec---cceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCP---VEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|++|+++|.+ .+.+.++++.||++||+|..|+++|....|+..+|++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 4 GSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp CCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCC
T ss_pred cCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhC
Confidence 35789999999984 368899999999999999999999998889999999999999999998
No 26
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.1e-17 Score=98.06 Aligned_cols=62 Identities=19% Similarity=0.612 Sum_probs=57.4
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
.+.++|.+|+++|. ++.+.++++.||++||+|..|+++|....|+..++++||+.||.++++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 35678999999997 567899999999999999999999988889999999999999999998
No 27
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=2.7e-17 Score=97.86 Aligned_cols=62 Identities=23% Similarity=0.572 Sum_probs=57.3
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
...++|.+|+++|. ++.+.++++.||++||+|..|+++|....|+..++++||..||.++++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTC
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhc
Confidence 35678999999997 567899999999999999999999988889999999999999999998
No 28
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.68 E-value=1.9e-17 Score=97.42 Aligned_cols=62 Identities=21% Similarity=0.533 Sum_probs=57.5
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhcc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKE 68 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~ 68 (150)
..++|++|+++|. ++.+.++++.||++||+|..|+++|....|+..+|++||+.||.+++++
T Consensus 4 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~ 65 (66)
T 1nyp_A 4 GVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGD 65 (66)
T ss_dssp CCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSC
T ss_pred CCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCC
Confidence 3578999999998 7789999999999999999999999988899999999999999999873
No 29
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=3.1e-17 Score=98.04 Aligned_cols=62 Identities=31% Similarity=0.726 Sum_probs=57.7
Q ss_pred CcccccccCceeecc-ceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPV-EQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|.+|+++|.++ +++.++++.||.+||+|..|+++|....|+..+|++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTS
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHcc
Confidence 457899999999975 68899999999999999999999998889999999999999999998
No 30
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.1e-17 Score=101.32 Aligned_cols=63 Identities=22% Similarity=0.565 Sum_probs=58.2
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhcc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKE 68 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~ 68 (150)
...++|++|+++|. ++.|.++++.||++||+|..|+++|....|+..+|++||..||.++|++
T Consensus 23 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~ 85 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFAS 85 (90)
T ss_dssp TCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSC
T ss_pred CCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCC
Confidence 45678999999996 7788999999999999999999999988899999999999999999983
No 31
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=6.2e-17 Score=96.27 Aligned_cols=63 Identities=17% Similarity=0.470 Sum_probs=58.4
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhcc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKE 68 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~ 68 (150)
++.++|..|+++|. ++.+.++++.||++||+|..|+++|....|+..+|++||..||.+++++
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 56789999999998 6789999999999999999999999998888899999999999999983
No 32
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=5.6e-17 Score=96.92 Aligned_cols=62 Identities=24% Similarity=0.689 Sum_probs=57.6
Q ss_pred CcccccccCceeeccc-eEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPVE-QLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|..|+++|.+.+ .+.++++.||.+||+|..|+++|..+.|+.++|++||+.||.++++
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhC
Confidence 3578999999999764 7899999999999999999999998889999999999999999998
No 33
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.1e-17 Score=98.61 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=53.6
Q ss_pred CCCCCCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccc-cccC
Q 042895 90 FSGPNKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCK-HNFS 149 (150)
Q Consensus 90 ~~~~~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~cy~ 149 (150)
|.+..++|++|++ |..++.|.++++.||++||+|..|+++|.+..|++.+++|||+ .||.
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~ 66 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYA 66 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHH
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHH
Confidence 3444589999999 6668999999999999999999999999888899999999999 6984
No 34
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.5e-17 Score=97.41 Aligned_cols=64 Identities=16% Similarity=0.407 Sum_probs=57.8
Q ss_pred CCcccccccCceeec---cceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhcc
Q 042895 5 GTQQKCKVCEKTVCP---VEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKE 68 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~ 68 (150)
.+.++|.+|+++|.+ .+++.++++.||++||+|..|+++|....|+.++|++||..||.++++|
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p 69 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGP 69 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCS
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCC
Confidence 356789999999985 3678999999999999999999999988899999999999999999884
No 35
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=3.9e-17 Score=97.15 Aligned_cols=57 Identities=12% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCCcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 93 PNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 93 ~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
+.++|.+|+++|.++.|.++++.||++||+|..|+++|....|+..+|++||+.||.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 60 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHN 60 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHH
T ss_pred CCCcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhh
Confidence 358999999955578899999999999999999999998888989999999999984
No 36
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=4e-17 Score=100.09 Aligned_cols=65 Identities=32% Similarity=0.746 Sum_probs=58.7
Q ss_pred CCCCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCcc--ccCCeeecCchhhhhhc
Q 042895 3 FIGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYS--SLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 3 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~--~~~g~~yC~~c~~~~~~ 67 (150)
..++.++|.+|+++|.+.+.+.++++.||.+||+|..|+++|....|. .++|++||+.||.++++
T Consensus 11 ~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhc
Confidence 345678999999999888888899999999999999999999988877 57999999999998876
No 37
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=5.9e-17 Score=97.91 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=50.9
Q ss_pred CcCCcccceecc----ceeeeCCccccccccccccCCcccCCCCccccCCccccccccCC
Q 042895 95 KNVLLAVKQCPW----EKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFSQ 150 (150)
Q Consensus 95 ~~C~~C~~i~~~----~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~~ 150 (150)
++|++|+++|.+ +.|.++++.||++||+|..|+++|.+..|++.+|+|||+.||.+
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 65 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSG 65 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhh
Confidence 799999994443 78999999999999999999999998889999999999999964
No 38
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.3e-16 Score=97.70 Aligned_cols=66 Identities=29% Similarity=0.638 Sum_probs=59.7
Q ss_pred CcccccccCceeeccc-eEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccccc
Q 042895 6 TQQKCKVCEKTVCPVE-QLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSN 71 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~ 71 (150)
..++|.+|+++|.+++ .+.++++.||++||+|..|+++|..+.|+..++++||+.||.++++++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 4579999999998766 58999999999999999999999988899999999999999999986544
No 39
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.5e-16 Score=99.17 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|++|+++|.++.|.++++.||++||+|..|+++|.+..|++.+|++||+.||.
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 80 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYE 80 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHH
T ss_pred CCCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHH
Confidence 48999999966788899999999999999999999998888999999999999984
No 40
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=4.2e-17 Score=99.31 Aligned_cols=64 Identities=19% Similarity=0.403 Sum_probs=58.2
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKES 69 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~ 69 (150)
.+.++|.+|+++|. ++.+.++++.||.+||+|..|+++|....|+..++++||+.||.++++++
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~ 76 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGP 76 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCC
Confidence 35678999999998 56899999999999999999999998778999999999999999999854
No 41
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2e-16 Score=98.41 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=51.5
Q ss_pred CCCcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 93 PNKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 93 ~~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
...+|.+|++.|.++.|.++++.||++||+|..|++.|....|++.+|++||+.||.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 80 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHAR 80 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHH
T ss_pred cCCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHH
Confidence 458999999955568899999999999999999999998888999999999999984
No 42
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2e-16 Score=96.38 Aligned_cols=61 Identities=26% Similarity=0.609 Sum_probs=57.0
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|++|+++|. ++.|.++++.||++||+|..|+++|..+.|+..++++||+.||.++++
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~ 74 (80)
T 1x3h_A 14 FSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRG 74 (80)
T ss_dssp CSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHS
T ss_pred cCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcC
Confidence 3578999999998 477899999999999999999999988889999999999999999998
No 43
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=6.9e-17 Score=96.58 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=50.3
Q ss_pred CCcCCcccc-eec---cceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCP---WEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~---~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|.+|++ |.. .+.|.++++.||++||+|..|+++|.+..|+.++|+|||+.||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcC
Confidence 488999999 553 36789999999999999999999998888999999999999985
No 44
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.7e-16 Score=94.80 Aligned_cols=63 Identities=24% Similarity=0.535 Sum_probs=57.3
Q ss_pred CCcccccccCceeeccc-eEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 5 GTQQKCKVCEKTVCPVE-QLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
.+.++|.+|+++|.+.+ .+.++++.||.+||+|..|+++|....|+.+++++||+.||.++++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 35678999999998654 7899999999999999999999987779999999999999999986
No 45
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.6e-16 Score=98.81 Aligned_cols=63 Identities=24% Similarity=0.512 Sum_probs=57.6
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKES 69 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~ 69 (150)
...+|.+|+++|. ++.+.++++.||.+||+|..|+++|....|+..++++||+.||.++|+++
T Consensus 24 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~ 86 (89)
T 1x64_A 24 RMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGP 86 (89)
T ss_dssp SCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSC
T ss_pred cCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCC
Confidence 4568999999998 57789999999999999999999998888999999999999999999843
No 46
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.64 E-value=5.2e-17 Score=95.53 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=50.9
Q ss_pred CcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++|++|+++|.++.|.++++.||++||+|..|+++|.+..|++.+|++||+.||.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred CCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 7899999944588899999999999999999999998889999999999999984
No 47
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=1.7e-16 Score=96.81 Aligned_cols=55 Identities=18% Similarity=0.413 Sum_probs=50.4
Q ss_pred CCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|.+|++ |..++.|.++++.||++||+|..|+++|.+ .|+++||+|||+.||.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~ 70 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYH 70 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHH
T ss_pred CCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHH
Confidence 478999999 667889999999999999999999999974 7899999999999984
No 48
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=8.6e-17 Score=95.40 Aligned_cols=56 Identities=18% Similarity=0.390 Sum_probs=51.3
Q ss_pred CCcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|.+|+++|.++.|.++++.||++||+|..|+++|.+..|++.++++||+.||.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 60 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYK 60 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHH
T ss_pred cCCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhH
Confidence 37999999955677899999999999999999999998889999999999999984
No 49
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.5e-16 Score=96.24 Aligned_cols=63 Identities=24% Similarity=0.542 Sum_probs=56.8
Q ss_pred CCCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCcccc-CCeeecCchhhhhhc
Q 042895 4 IGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSL-EGVFYCKPHFEQLLK 67 (150)
Q Consensus 4 ~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~-~g~~yC~~c~~~~~~ 67 (150)
....++|++|+++|. ++.+.++++.||++||+|..|+++|....|... +|++||+.||.++++
T Consensus 12 ~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~ 75 (81)
T 2dlo_A 12 VATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFA 75 (81)
T ss_dssp CSSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTT
T ss_pred hcCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhc
Confidence 346789999999998 568999999999999999999999987777765 799999999999998
No 50
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.64 E-value=6.8e-17 Score=98.78 Aligned_cols=58 Identities=19% Similarity=0.406 Sum_probs=51.5
Q ss_pred CCCCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 92 GPNKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 92 ~~~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++.++|.+|++ |..++.|.++++.||++||+|..|+++|....|++.++++||+.||.
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 63 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYG 63 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHH
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHH
Confidence 34589999999 66788999999999999999999999998888999999999999984
No 51
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1e-16 Score=96.21 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=50.6
Q ss_pred CcCCcccceeccceeeeCCccccccccccccCCcccC-CCCccccCCccccccccC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSIS-PSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~cy~ 149 (150)
++|++|+++|.++.|.++++.||++||+|..|+++|. +..|++.++++||..||.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~ 61 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQ 61 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHH
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHCh
Confidence 7999999966678899999999999999999999997 778899999999999984
No 52
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.63 E-value=1.5e-16 Score=94.60 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=50.8
Q ss_pred CcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++|.+|+++|.++.|.++++.||++||+|..|+++|.+..|++.++++||+.||.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 60 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFC 60 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHH
T ss_pred CCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHH
Confidence 7899999955677899999999999999999999998889999999999999984
No 53
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=2.9e-16 Score=98.06 Aligned_cols=56 Identities=36% Similarity=0.730 Sum_probs=51.7
Q ss_pred CCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
..+|.+|++ |...+.|.++++.||++||+|..|+++|....|++.+|++||+.||.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 71 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFN 71 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHH
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHH
Confidence 489999999 77778899999999999999999999998878999999999999984
No 54
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-16 Score=96.73 Aligned_cols=62 Identities=18% Similarity=0.563 Sum_probs=56.6
Q ss_pred CcccccccCceeec-cceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCP-VEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|.+|+++|.+ +.++.++++.||++||+|..|+++|....|+..++++||+.||.++++
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~ 76 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFS 76 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGG
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcC
Confidence 45789999999984 457788999999999999999999998889999999999999999998
No 55
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=1.3e-16 Score=97.15 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=50.9
Q ss_pred CCcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|.+|+++|.++.|.++++.||++||+|..|+++|....|++.++++||+.||.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~ 70 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHAR 70 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHH
Confidence 48999999955567899999999999999999999998778999999999999984
No 56
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.62 E-value=4.2e-16 Score=94.96 Aligned_cols=61 Identities=23% Similarity=0.565 Sum_probs=56.7
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|.+|+++|. ++.|.++++.||.+||+|..|+++|....|+..++++||+.||.++++
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 74 (80)
T 2cuq_A 14 FAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFA 74 (80)
T ss_dssp SSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTT
T ss_pred cCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcC
Confidence 4578999999997 468899999999999999999999988789999999999999999998
No 57
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.62 E-value=2.8e-16 Score=93.68 Aligned_cols=62 Identities=27% Similarity=0.739 Sum_probs=56.5
Q ss_pred CcccccccCceeeccc-eEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPVE-QLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|++|+++|.+.+ ++.+.++.||++||+|..|+++|..+.|+..+|++||+.||.++|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 5678999999999777 4689999999999999999999988889999999999999998874
No 58
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=4.4e-16 Score=93.36 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=55.2
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCC-CCCccccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLK-LSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~-~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
..++|++|+++|. ++.|.++++.||++||+|..|+++|. ...|+..++++||..||.++++
T Consensus 4 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 4 GSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp SCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4678999999998 57889999999999999999999998 5568889999999999998876
No 59
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.61 E-value=6.1e-16 Score=109.02 Aligned_cols=63 Identities=29% Similarity=0.730 Sum_probs=58.6
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
++.++|.+|+++|.+++.+.++++.||.+||+|..|+++|..+.|+.++|++||+.||.++++
T Consensus 113 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 175 (192)
T 1b8t_A 113 GGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG 175 (192)
T ss_dssp CCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC
T ss_pred CCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcC
Confidence 345689999999998888899999999999999999999988889999999999999999998
No 60
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=3.6e-16 Score=93.39 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCcCCcccc-eecc-ceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPW-EKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~-~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|.+|++ |... ..|.++++.||++||+|..|+++|.+..|+..++++||+.||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYV 62 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHH
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHH
Confidence 389999999 6654 4789999999999999999999998888999999999999984
No 61
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=6.4e-16 Score=94.03 Aligned_cols=62 Identities=23% Similarity=0.495 Sum_probs=55.9
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhcc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKE 68 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~ 68 (150)
.+.++|++|+++|. ++.|.++++.||++||+|..|+++|.... +.++|++||..||.++++|
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p 74 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVS 74 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCC
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCC
Confidence 35678999999998 77889999999999999999999998765 5899999999999999984
No 62
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=4e-16 Score=94.18 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=50.4
Q ss_pred CcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccc-cccC
Q 042895 95 KNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCK-HNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~-~cy~ 149 (150)
++|++|++ |..++.|.++++.||++||+|..|+++|.++.|++.+|.+||+ .||.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~ 57 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYS 57 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHH
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHH
Confidence 46999999 6668899999999999999999999999888899999999999 6984
No 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.59 E-value=7.9e-16 Score=90.20 Aligned_cols=59 Identities=22% Similarity=0.630 Sum_probs=53.4
Q ss_pred cccccccCceeecc-ceEEeCCcccc--cCCcccccccccCCCCCccccCCeeec-Cchhhhh
Q 042895 7 QQKCKVCEKTVCPV-EQLSTDGVVYH--KSCFKCSRCKGTLKLSNYSSLEGVFYC-KPHFEQL 65 (150)
Q Consensus 7 ~~~C~~C~~~I~~~-~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC-~~c~~~~ 65 (150)
+++|++|+++|.++ +.|.++++.|| ++||+|..|+++|....|+.++|++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 46899999999874 68999999999 999999999999998889999999999 7888764
No 64
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.59 E-value=8.4e-16 Score=101.02 Aligned_cols=61 Identities=21% Similarity=0.515 Sum_probs=55.1
Q ss_pred cccccccCceeeccceEEeCCcccccCCcccccccccCC--CCCccccCCeeecCchhhhhhc
Q 042895 7 QQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLK--LSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
.++|++|+++|...+.+.++++.||++||+|..|+++|. ...|+.++|++||+.||.++|+
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 468999999999666799999999999999999999997 3579999999999999999874
No 65
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=5.4e-16 Score=94.37 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=49.0
Q ss_pred CCcCCcccceeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|++|+++|.++.|.++++.||++||+|..|+++|.+..| +++|++||+.||.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy~ 69 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR-ELKGELYCLPCHD 69 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTTCE-EETTEEECHHHHH
T ss_pred CCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCCCE-eECCEEeCHHHHH
Confidence 389999999555888999999999999999999999977654 8899999999985
No 66
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=3.8e-16 Score=93.29 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=50.3
Q ss_pred CcCCcccc-eecc-ceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 95 KNVLLAVK-QCPW-EKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~~-~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++|++|++ |.++ ..|.++++.||++||+|..|+++|.+..|++.+|++||+.||.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYE 62 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHH
T ss_pred CCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHh
Confidence 78999999 6665 4789999999999999999999998889999999999999984
No 67
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.58 E-value=5.3e-16 Score=90.95 Aligned_cols=55 Identities=18% Similarity=0.357 Sum_probs=49.9
Q ss_pred CcCCcccc-eec-cceeeeCCcccc--ccccccccCCcccCCCCccccCCcccc-ccccC
Q 042895 95 KNVLLAVK-QCP-WEKVAAESQASH--KTCFKCSYAGYSISPSNYAALEGILYC-KHNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~-~~~v~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~g~~yC-~~cy~ 149 (150)
++|++|++ |.+ ++.|.++|+.|| ++||+|..|+++|.+..|++++|+||| .+||.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~ 62 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKK 62 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHH
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhh
Confidence 78999999 555 578999999999 999999999999998899999999999 78874
No 68
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.58 E-value=5.4e-16 Score=92.62 Aligned_cols=55 Identities=20% Similarity=0.381 Sum_probs=50.3
Q ss_pred CcCCcccc-eec-cceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 95 KNVLLAVK-QCP-WEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~-~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++|.+|++ |.+ ++.|.++++.||++||+|..|+++|.+..|++.+|.+||+.||.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~ 62 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYE 62 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHH
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHH
Confidence 78999999 665 47789999999999999999999998888999999999999984
No 69
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.9e-15 Score=91.32 Aligned_cols=60 Identities=22% Similarity=0.580 Sum_probs=54.1
Q ss_pred CcccccccCceeec----cceEEeCCcccccCCcccccccccCCCCCccccCCeeecCchhhhh
Q 042895 6 TQQKCKVCEKTVCP----VEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQL 65 (150)
Q Consensus 6 ~~~~C~~C~~~I~~----~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~ 65 (150)
..++|++|+++|.+ .+.+.++++.||++||+|..|+++|....|+..+|++||+.||.++
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 45789999999984 3688999999999999999999999988899999999999999753
No 70
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=1.1e-15 Score=99.14 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=50.0
Q ss_pred CCcCCcccc-eeccceeeeCCccccccccccccCCcccCC--CCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISP--SNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~--~~~~~~~g~~yC~~cy~ 149 (150)
.++|++|++ |...+.|.++++.||++||+|..|+++|.. ..|++++|+|||+.||.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~ 61 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 61 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHH
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHH
Confidence 488999999 665558999999999999999999999963 58999999999999984
No 71
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.56 E-value=4.3e-16 Score=92.91 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=49.8
Q ss_pred CcCCcccc-eeccce-eeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 95 KNVLLAVK-QCPWEK-VAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~-v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++|++|++ |...+. +.++++.||++||+|..|+++|..+.|+..+|++||+.||.
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHH
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 79999999 666665 57999999999999999999998778999999999999985
No 72
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=1.2e-15 Score=92.31 Aligned_cols=56 Identities=23% Similarity=0.446 Sum_probs=49.8
Q ss_pred CCcCCcccc-eeccc-eeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWE-KVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~-~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
..+|++|++ |.+.+ .+.++|+.||++||+|..|+++|..+.|+..+|++||+.||.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHH
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 389999999 65444 468999999999999999999998888999999999999984
No 73
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.56 E-value=2.2e-15 Score=99.02 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=50.1
Q ss_pred CCcCCcccc-eeccceeeeCCccccccccccccCCcccC--CCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSIS--PSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~cy~ 149 (150)
.++|++|++ |...+.|.++++.||++||+|..|+++|. +..|+.++|++||+.||.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~ 119 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 119 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHH
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhh
Confidence 379999999 66555799999999999999999999996 468999999999999984
No 74
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.55 E-value=2.2e-15 Score=95.67 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=51.6
Q ss_pred CCcCCcccc-eec-cceeeeCCccccccccccccCCcccCCCCccccCCccccccccCC
Q 042895 94 NKNVLLAVK-QCP-WEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFSQ 150 (150)
Q Consensus 94 ~~~C~~C~~-i~~-~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~~ 150 (150)
.++|++|++ |.. ++.|.++++.||++||+|..|+++|.+..|++.+|++||+.||.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~ 63 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTR 63 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhh
Confidence 388999999 544 778999999999999999999999988889999999999999863
No 75
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.53 E-value=6.4e-15 Score=89.89 Aligned_cols=61 Identities=20% Similarity=0.499 Sum_probs=54.7
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCC-CCcc-ccCCeeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKL-SNYS-SLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~-~~~g~~yC~~c~~~~~~ 67 (150)
..++|++|+++|. ++.+.++++.||++||+|..|+++|.. ..|. ..++++||+.||.++++
T Consensus 14 ~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 14 FGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp SSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred cCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 4578999999998 778899999999999999999999975 4566 58999999999999998
No 76
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.53 E-value=1.8e-14 Score=94.64 Aligned_cols=68 Identities=22% Similarity=0.539 Sum_probs=58.5
Q ss_pred cccccccCceeeccc-eEEeCCcccccCCcccccccccCCCC-CccccCCeeecCchhhhhhccccccCC
Q 042895 7 QQKCKVCEKTVCPVE-QLSTDGVVYHKSCFKCSRCKGTLKLS-NYSSLEGVFYCKPHFEQLLKESSNFNK 74 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~~g~~yC~~c~~~~~~~~~~~~~ 74 (150)
.++|++|+++|...+ ++.++++.||.+||+|..|+++|..+ .|+..++++||..||.+++++++.+..
T Consensus 8 ~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~ 77 (123)
T 2l3k_A 8 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGG 77 (123)
T ss_dssp SCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCC
T ss_pred CCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCC
Confidence 458999999998755 56899999999999999999999544 589999999999999999997665443
No 77
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.51 E-value=3.6e-15 Score=98.29 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=51.3
Q ss_pred CcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 95 KNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
++|++|++ |..++.+.++|+.||++||+|..|+++|.+..|+++||+|||+.||.
T Consensus 4 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~ 59 (126)
T 2xqn_T 4 PRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYV 59 (126)
T ss_dssp CBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHH
T ss_pred CCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhC
Confidence 78999999 66678899999999999999999999998888999999999999984
No 78
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.50 E-value=5.1e-15 Score=97.28 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=48.2
Q ss_pred CcCCcccc-eeccc-eeeeCCccccccccccccCCccc-CCCCccccCCccccccccC
Q 042895 95 KNVLLAVK-QCPWE-KVAAESQASHKTCFKCSYAGYSI-SPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~~~-~v~~~~~~~H~~Cf~C~~C~~~l-~~~~~~~~~g~~yC~~cy~ 149 (150)
.+|++|++ |...+ .|.++++.||++||+|..|+++| .+..|+..++++||..||.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~ 66 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIY 66 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHH
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhH
Confidence 38999999 66544 56899999999999999999999 5567999999999999984
No 79
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.48 E-value=4.4e-15 Score=97.46 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCcCCcccc-eeccceeeeCCccccccccccccCCcccC--CCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSIS--PSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~cy~ 149 (150)
.++|++|++ |...+.|.++++.||++||+|..|+++|. +..|+.++|+|||+.||.
T Consensus 5 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~ 63 (122)
T 1m3v_A 5 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYI 63 (122)
T ss_dssp CCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHH
T ss_pred CCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHH
Confidence 378999999 66666799999999999999999999996 467999999999999984
No 80
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.45 E-value=2.2e-14 Score=100.23 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred CCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|.+|++ |...+.+.++|+.||++||+|..|+++|.+..| .++|++||+.||.
T Consensus 60 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~ 115 (182)
T 2jtn_A 60 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFF 115 (182)
T ss_dssp CCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHH
T ss_pred CCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccc
Confidence 479999999 665556889999999999999999999977665 7899999999984
No 81
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.42 E-value=4.4e-14 Score=93.62 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=48.8
Q ss_pred CcCCcccc-eeccceeeeCCccccccccccccCCcccC--CCCccccCCccccccccC
Q 042895 95 KNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSIS--PSNYAALEGILYCKHNFS 149 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~--~~~~~~~~g~~yC~~cy~ 149 (150)
++|.+|++ |...+.|.|+|+.||++||+|..|+++|. +..|+..||+|||+.||.
T Consensus 3 ~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~ 60 (131)
T 2xjy_A 3 LTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYL 60 (131)
T ss_dssp CBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHH
T ss_pred ccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchh
Confidence 78999999 55555789999999999999999999995 367999999999999984
No 82
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.41 E-value=6.6e-14 Score=85.35 Aligned_cols=61 Identities=21% Similarity=0.472 Sum_probs=52.5
Q ss_pred CcccccccCceeeccceEEeCCcccccCCcccccccccCCCCCccccCC-eeecCchhhhhhc
Q 042895 6 TQQKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLKLSNYSSLEG-VFYCKPHFEQLLK 67 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~c~~~~~~ 67 (150)
..++|++|+++|. ++.|.++++.||++||+|..|+++|..+.++..++ .+||..||.+++.
T Consensus 14 ~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 14 YGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred hCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 3568999999998 67899999999999999999999998777666555 5799999987765
No 83
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.38 E-value=1.5e-13 Score=94.92 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=47.9
Q ss_pred CCcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccccCCccccccccC
Q 042895 94 NKNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 94 ~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.++|.+|++ |...+.|.++|+.||++||+|..|+++|.+..| ++||.+||+.||.
T Consensus 6 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~ 61 (169)
T 2rgt_A 6 IPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFF 61 (169)
T ss_dssp -CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCE-ESSSCEECHHHHH
T ss_pred CCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCc-ccCCeeeeccccc
Confidence 378999999 666567899999999999999999999977664 7899999999984
No 84
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.34 E-value=7.2e-13 Score=92.98 Aligned_cols=61 Identities=26% Similarity=0.694 Sum_probs=53.3
Q ss_pred cccccCceeeccc-eEEeCCcccccCCcccccccccCCCC-CccccCCeeecCchhhhhhccc
Q 042895 9 KCKVCEKTVCPVE-QLSTDGVVYHKSCFKCSRCKGTLKLS-NYSSLEGVFYCKPHFEQLLKES 69 (150)
Q Consensus 9 ~C~~C~~~I~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~-~~~~~~g~~yC~~c~~~~~~~~ 69 (150)
+|.+|+++|...+ ++.+.++.||++||+|..|+++|..+ .|+..++++||..||.+++.++
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALING 133 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC--
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhccc
Confidence 7999999998766 67899999999999999999999644 5888999999999999988743
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.59 E-value=1.7e-08 Score=49.89 Aligned_cols=27 Identities=37% Similarity=0.428 Sum_probs=25.9
Q ss_pred CcCCcccc-eeccceeeeCCcccccccc
Q 042895 95 KNVLLAVK-QCPWEKVAAESQASHKTCF 121 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~~~~~H~~Cf 121 (150)
++|++|++ +++.|.+.+.|+.||+.||
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 68999999 9999999999999999998
No 86
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.49 E-value=2.9e-08 Score=49.07 Aligned_cols=29 Identities=34% Similarity=0.792 Sum_probs=27.0
Q ss_pred cccccccCceeeccceEEeCCcccccCCc
Q 042895 7 QQKCKVCEKTVCPVEQLSTDGVVYHKSCF 35 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 35 (150)
+++|+.|++.|++.|.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 46899999999999999999999999998
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=92.38 E-value=0.31 Score=30.45 Aligned_cols=75 Identities=16% Similarity=0.298 Sum_probs=45.0
Q ss_pred CcccccccCceeeccceEEe--CCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhccccccCCCCCCCCCCC
Q 042895 6 TQQKCKVCEKTVCPVEQLST--DGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSP 83 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~--~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~ 83 (150)
....|..|+..-...+.|.- =++.||..|+.-.. .+ ...+..+|..|
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C---------------------- 54 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPEC---------------------- 54 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTT----------------------
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcC----------------------
Confidence 45679999876432223432 25789998875331 11 13456678777
Q ss_pred ccccccCCCCCCcCCcccc-eeccceeeeC--Cccccccccc
Q 042895 84 SKVASMFSGPNKNVLLAVK-QCPWEKVAAE--SQASHKTCFK 122 (150)
Q Consensus 84 ~~~~~~~~~~~~~C~~C~~-i~~~~~v~~~--~~~~H~~Cf~ 122 (150)
..|..|++ ......|.-. ++.||..|+.
T Consensus 55 -----------~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 55 -----------KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp -----------CCCTTTCCCSCCTTEEECSSSCCEEEGGGSS
T ss_pred -----------CcccccCccCCCCCeeECCCCCcHHhHHhcC
Confidence 56888887 3333344333 5779999875
No 88
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=88.22 E-value=0.26 Score=31.27 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=23.1
Q ss_pred CcCCcccceeccc-------eeeeCCcccccccc--------ccccCCcccCCC
Q 042895 95 KNVLLAVKQCPWE-------KVAAESQASHKTCF--------KCSYAGYSISPS 133 (150)
Q Consensus 95 ~~C~~C~~i~~~~-------~v~~~~~~~H~~Cf--------~C~~C~~~l~~~ 133 (150)
..|+.|...+... .+..=|..||..|. .|..|...+...
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 5677777622221 22334677777765 588888877543
No 89
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.98 E-value=0.38 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCCCcccccccCceeeccceEEeCCcccccCCc
Q 042895 3 FIGTQQKCKVCEKTVCPVEQLSTDGVVYHKSCF 35 (150)
Q Consensus 3 ~~~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 35 (150)
|......|+.|...|.++.....=+..||..|+
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred ccCCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 455667899999999865533333445777776
No 90
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=81.64 E-value=0.54 Score=29.61 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=18.4
Q ss_pred CcCCcccc-eeccceeeeC--Cccccccccc
Q 042895 95 KNVLLAVK-QCPWEKVAAE--SQASHKTCFK 122 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~--~~~~H~~Cf~ 122 (150)
..|..|++ ...++.|.-. ++.||..|+.
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSS
T ss_pred CccCcccccCCCCceEEcCCCCccccccccC
Confidence 56888887 4344555433 5779999865
No 91
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=81.30 E-value=4.5 Score=25.15 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=24.4
Q ss_pred cccccccCceeeccceEEeC----CcccccCCcccccccccCCCCCccccCCeeecCch
Q 042895 7 QQKCKVCEKTVCPVEQLSTD----GVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPH 61 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~~~~~~----~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c 61 (150)
...|..|+. .++.|.-. .+.||..|+. |.. ...|..||..|
T Consensus 15 ~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~-------L~~----~P~g~W~Cp~c 59 (107)
T 4gne_A 15 EDYCFQCGD---GGELVMCDKKDCPKAYHLLCLN-------LTQ----PPYGKWECPWH 59 (107)
T ss_dssp CSSCTTTCC---CSEEEECCSTTCCCEECTGGGT-------CSS----CCSSCCCCGGG
T ss_pred CCCCCcCCC---CCcEeEECCCCCCcccccccCc-------CCc----CCCCCEECCCC
Confidence 346888873 35554333 3578988763 211 23567788776
No 92
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=80.60 E-value=0.77 Score=25.07 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=15.9
Q ss_pred cccCCcccCCCCccccCCcccc
Q 042895 123 CSYAGYSISPSNYAALEGILYC 144 (150)
Q Consensus 123 C~~C~~~l~~~~~~~~~g~~yC 144 (150)
|..|+..++....++.||+.||
T Consensus 10 C~~C~c~Vs~~eai~~dGK~YC 31 (55)
T 1jjd_A 10 CEPCLCNVDPSKAIDRNGLYYC 31 (55)
T ss_dssp STTCCCCBCTTTSEESSSCEES
T ss_pred CCCCeeEechHHhhhcCCeEEe
Confidence 5667777766667777788777
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=78.40 E-value=2.5 Score=25.40 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=8.0
Q ss_pred CcccccccCceee
Q 042895 6 TQQKCKVCEKTVC 18 (150)
Q Consensus 6 ~~~~C~~C~~~I~ 18 (150)
...+|..|+..|-
T Consensus 15 ~~qiCqiCGD~VG 27 (93)
T 1weo_A 15 DGQFCEICGDQIG 27 (93)
T ss_dssp SSCBCSSSCCBCC
T ss_pred CCCccccccCccc
Confidence 3456777766664
No 94
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=77.70 E-value=0.95 Score=24.58 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=27.7
Q ss_pred CcCCcccceeccc-------eeeeCCcccccccc--------ccccCCcccCCCC
Q 042895 95 KNVLLAVKQCPWE-------KVAAESQASHKTCF--------KCSYAGYSISPSN 134 (150)
Q Consensus 95 ~~C~~C~~i~~~~-------~v~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 134 (150)
..|+.|...+... .+..=|..||.+|+ +|..|+..+....
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 5688888833321 34455888999887 5999998886543
No 95
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=76.98 E-value=5.1 Score=22.62 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=27.8
Q ss_pred CcCCcccc-eeccceee--eCCccccccccc--------cccCCcccCCCC
Q 042895 95 KNVLLAVK-QCPWEKVA--AESQASHKTCFK--------CSYAGYSISPSN 134 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~--~~~~~~H~~Cf~--------C~~C~~~l~~~~ 134 (150)
..|..|.. ......+. .=+..||..|+. |..|+..+....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 67999988 44333332 347889999974 888988885543
No 96
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=75.61 E-value=1.1 Score=24.89 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=27.9
Q ss_pred CcCCcccceeccc-------eeeeCCcccccccc--------ccccCCcccCCCC
Q 042895 95 KNVLLAVKQCPWE-------KVAAESQASHKTCF--------KCSYAGYSISPSN 134 (150)
Q Consensus 95 ~~C~~C~~i~~~~-------~v~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 134 (150)
..|+.|...+... .+..=|..||..|+ +|..|...+....
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 6799998833322 23444788999887 6999998886543
No 97
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=74.02 E-value=3.9 Score=23.14 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=24.6
Q ss_pred CCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 33 SCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 33 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
+-|.|..|...+.. .....-|..||..|..+.+.
T Consensus 7 ~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 7 EYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHT
T ss_pred ccCCCCCccccccC-CEEcCCCCeecHHHHHHHHH
Confidence 44778888777643 34456889999999887764
No 98
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.73 E-value=2.6 Score=23.77 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=17.7
Q ss_pred CcccccccCceeeccceE--EeCCcccccCCc
Q 042895 6 TQQKCKVCEKTVCPVEQL--STDGVVYHKSCF 35 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~--~~~~~~~H~~Cf 35 (150)
....|..|...+...+.+ ..=+..||..|+
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci 53 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCV 53 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHH
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHH
Confidence 345688888777655432 223556777666
No 99
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=71.32 E-value=1.9 Score=30.80 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=29.2
Q ss_pred CCCCCcCCcccc-eeccceeeeCCcccccccc----------ccccCCcccCCC
Q 042895 91 SGPNKNVLLAVK-QCPWEKVAAESQASHKTCF----------KCSYAGYSISPS 133 (150)
Q Consensus 91 ~~~~~~C~~C~~-i~~~~~v~~~~~~~H~~Cf----------~C~~C~~~l~~~ 133 (150)
.+....|..|.. ++.+..=.-=+..||..|+ +|..|+..+...
T Consensus 177 ~~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 177 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TTTCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 334688999999 5544221113677999998 688888877543
No 100
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=71.08 E-value=2 Score=26.44 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=38.7
Q ss_pred cccccccCCCCCccccCCeeecCchhhhhhccccccCCCCCCCCCCCccccccCCCCCCcCCcccc-eeccceeeeCCcc
Q 042895 37 CSRCKGTLKLSNYSSLEGVFYCKPHFEQLLKESSNFNKNFQLPAKSPSKVASMFSGPNKNVLLAVK-QCPWEKVAAESQA 115 (150)
Q Consensus 37 C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~-i~~~~~v~~~~~~ 115 (150)
|..|+.++..-.-...=+..+|-+|+...... +...|+.|.. |..-|.. .+|..
T Consensus 4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~------------------------~~k~Cp~C~~~V~rVe~~-~~~~i 58 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK------------------------GDKMCPGCSDPVQRIEQC-TRGSL 58 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT------------------------TCCBCTTTCCBCSEEEEE-EGGGC
T ss_pred cCccCCCeEEEeeeccccccHHHHHHHHHHhc------------------------cCCCCcCcCCeeeeeEEe-ccCCE
Confidence 56677766443334455667888888654320 0267999999 6555553 34555
Q ss_pred ccccccccc---cCCccc
Q 042895 116 SHKTCFKCS---YAGYSI 130 (150)
Q Consensus 116 ~H~~Cf~C~---~C~~~l 130 (150)
|-|. .|++..
T Consensus 59 -----f~C~~~~~Ckrty 71 (101)
T 3vk6_A 59 -----FMCSIVQGCKRTY 71 (101)
T ss_dssp -----CCCCCCCCCCCCC
T ss_pred -----EECCCCCCHHHHh
Confidence 4555 577665
No 101
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.89 E-value=2.4 Score=23.27 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=24.5
Q ss_pred CcCCcccceeccc-------eeeeCCcccccccc--------ccccCCcccC
Q 042895 95 KNVLLAVKQCPWE-------KVAAESQASHKTCF--------KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~i~~~~-------~v~~~~~~~H~~Cf--------~C~~C~~~l~ 131 (150)
..|+.|...+... .+..=+..||..|+ +|..|+..|.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 6799998833322 33445788888887 4777777663
No 102
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.75 E-value=4.1 Score=22.75 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=22.8
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+........=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 48 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFY 48 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHH
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHH
Confidence 4667778776654223336788899999877664
No 103
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.60 E-value=4.8 Score=24.93 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=21.9
Q ss_pred CcccccccccCCCCCccc-cCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSS-LEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+.. .... .=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhc
Confidence 3667777766643 3333 6778888888777654
No 104
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=69.35 E-value=3.4 Score=21.49 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=23.0
Q ss_pred CcCCcccc-eecc-ceee--eCCcccccccc--------ccccCCcccC
Q 042895 95 KNVLLAVK-QCPW-EKVA--AESQASHKTCF--------KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~-i~~~-~~v~--~~~~~~H~~Cf--------~C~~C~~~l~ 131 (150)
..|+.|.. +..+ +.+. .=+..||..|+ +|..|++.|.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 67999988 4332 2222 33778888886 3666666553
No 105
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=68.91 E-value=1.8 Score=30.91 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=21.5
Q ss_pred CCcccccccCceeeccceEEeCCcccccCCc
Q 042895 5 GTQQKCKVCEKTVCPVEQLSTDGVVYHKSCF 35 (150)
Q Consensus 5 ~~~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 35 (150)
+....|..|...|..+..-.-=+..||..|+
T Consensus 178 ~~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQSCETCGIRMHLPCV 208 (238)
T ss_dssp TTCCBCTTTCSBCSSCEECSSSCCEECHHHH
T ss_pred CCCCcCcchhhHHhCCcccCccChHHHHHHH
Confidence 4567899999999865432223556888887
No 106
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=68.41 E-value=4.5 Score=24.12 Aligned_cols=34 Identities=15% Similarity=0.355 Sum_probs=23.2
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+........=|..||..|..+.+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 3677888777654222336788899999877664
No 107
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=68.40 E-value=4.6 Score=22.73 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=23.1
Q ss_pred CcccccccccCCCCCcccc-CCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSL-EGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~-~g~~yC~~c~~~~~~ 67 (150)
=+.|..|...+.. ..... =|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 15 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GGSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHH
T ss_pred CCCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHH
Confidence 3677788776643 33444 488999999887765
No 108
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=67.25 E-value=0.81 Score=31.90 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=17.9
Q ss_pred cccccCCcccCCCCccccCCccccccccC
Q 042895 121 FKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 121 f~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.+|+.|+...-...-...+|+++|..||.
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhc
Confidence 34666766664434445577777777764
No 109
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=66.66 E-value=7.1 Score=21.26 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=14.6
Q ss_pred cccccccCCCCCccccCCeeecCchhhhhh
Q 042895 37 CSRCKGTLKLSNYSSLEGVFYCKPHFEQLL 66 (150)
Q Consensus 37 C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~ 66 (150)
|..|...+........=|..||..|..+.+
T Consensus 8 C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 8 CPICLEDPSNYSMALPCLHAFCYVCITRWI 37 (68)
T ss_dssp CSSCCSCCCSCEEETTTTEEESTTHHHHHH
T ss_pred CeeCCccccCCcEecCCCCeeHHHHHHHHH
Confidence 444444443222233445667777766544
No 110
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.69 E-value=6.7 Score=21.74 Aligned_cols=37 Identities=11% Similarity=0.278 Sum_probs=25.7
Q ss_pred CcCCcccceeccceeeeCCcccccccc--------ccccCCcccC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF--------KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf--------~C~~C~~~l~ 131 (150)
..|..|...+...++..=+..||..|+ +|..|+..+.
T Consensus 16 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp CBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 679999884444344455777888884 4788887774
No 111
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=64.85 E-value=4.3 Score=22.32 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=24.9
Q ss_pred CcCCcccc-eeccceee--eCCcccccccc--------ccccCCcccC
Q 042895 95 KNVLLAVK-QCPWEKVA--AESQASHKTCF--------KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~--~~~~~~H~~Cf--------~C~~C~~~l~ 131 (150)
..|+.|.. +..++.+. .=+..||..|+ +|..|...|.
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 67999988 43333333 33778888886 3888887774
No 112
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=64.09 E-value=1.4 Score=30.61 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=25.1
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhh
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQ 64 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~ 64 (150)
=.+|..|+.......-...+|+.+|.+|+.+
T Consensus 172 ~~~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 3579999988876666678999999999865
No 113
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=63.96 E-value=2.3 Score=26.41 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=20.0
Q ss_pred CcccccccCceeeccc-eE----EeC------CcccccCCcc
Q 042895 6 TQQKCKVCEKTVCPVE-QL----STD------GVVYHKSCFK 36 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~~----~~~------~~~~H~~Cf~ 36 (150)
+-.+|..|++.|.-++ .| ... ...+|..||.
T Consensus 24 ~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 24 GRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp SCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 3468999999998665 12 111 1356888876
No 114
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.66 E-value=4.9 Score=22.29 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=22.9
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+.. .....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccCC-eEEcCCCChhhHHHHHHHHH
Confidence 4677788776653 23346788899999887663
No 115
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=61.05 E-value=3.2 Score=26.13 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=20.3
Q ss_pred CcccccccCceeeccc-eEEe-------C---CcccccCCcc
Q 042895 6 TQQKCKVCEKTVCPVE-QLST-------D---GVVYHKSCFK 36 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~~~~-------~---~~~~H~~Cf~ 36 (150)
+-..|..|++.|.-++ .|-. . ...||..||.
T Consensus 19 ~RA~Ck~Ck~kI~KgeLRiG~~v~~~~~dG~~~~W~H~~Cf~ 60 (114)
T 1v9x_A 19 SRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCIL 60 (114)
T ss_dssp SCCBCSSSCCBCCSSSEEEEECCCCSSSSCCCCEEEEHHHHH
T ss_pred CCCCchhhCCccCCCCEEEEEEecCcccCCCcceeECccccc
Confidence 4468999999998666 2211 1 2356888875
No 116
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.41 E-value=8.3 Score=21.41 Aligned_cols=37 Identities=14% Similarity=0.379 Sum_probs=26.0
Q ss_pred CcCCcccc-eeccceee--eCCcccccccc--------ccccCCcccC
Q 042895 95 KNVLLAVK-QCPWEKVA--AESQASHKTCF--------KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~--~~~~~~H~~Cf--------~C~~C~~~l~ 131 (150)
..|+.|.. +.....+. .=+..||..|+ +|..|.+.+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 67999988 44444333 34778898887 4888888874
No 117
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=59.28 E-value=3.3 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.449 Sum_probs=19.9
Q ss_pred CcccccccCceeeccc-eEEeC---CcccccCCc
Q 042895 6 TQQKCKVCEKTVCPVE-QLSTD---GVVYHKSCF 35 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~~~~~---~~~~H~~Cf 35 (150)
....|..|++++.+++ .|.-. ...||..|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3457999999997655 45555 556887663
No 118
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.05 E-value=3.8 Score=22.39 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=23.4
Q ss_pred CcCCcccceeccceeeeCCcccccccc---------ccccCCcccCC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF---------KCSYAGYSISP 132 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf---------~C~~C~~~l~~ 132 (150)
..|+.|...+....+..=|..||..|+ +|..|++.+..
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 568888874444334445666776664 36667776643
No 119
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=58.63 E-value=12 Score=22.58 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=26.8
Q ss_pred cCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 32 KSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 32 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
++-|.|..|...+.+ ......|..||..|-.+.+.
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLL 61 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHH
Confidence 567899999877744 45556899999999877664
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.62 E-value=15 Score=21.14 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=26.5
Q ss_pred cCCcccc-eeccceeeeC--CccccccccccccCCcccCCCCccccCC-ccccccccC
Q 042895 96 NVLLAVK-QCPWEKVAAE--SQASHKTCFKCSYAGYSISPSNYAALEG-ILYCKHNFS 149 (150)
Q Consensus 96 ~C~~C~~-i~~~~~v~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~cy~ 149 (150)
.|..|++ ...++.|.-. ++.||..|+. -+|.. +..| .-+|..|-.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~----~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLN-----PPLDK----VPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSS-----SCCSS----CCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccC-----CCccC----CCCCCCcCCcCccC
Confidence 5778887 4444555433 5779999964 12321 2345 677877753
No 121
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=58.12 E-value=7.7 Score=22.63 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=23.3
Q ss_pred CcccccccccCCCCCcccc-CCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSL-EGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~-~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+.. ..... =|..||..|..+.+.
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHH
Confidence 4778888877643 34445 489999999877664
No 122
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.08 E-value=14 Score=21.14 Aligned_cols=39 Identities=8% Similarity=0.239 Sum_probs=26.4
Q ss_pred CcCCcccceecc-c---eeeeCCccccccc-----------cccccCCcccCCC
Q 042895 95 KNVLLAVKQCPW-E---KVAAESQASHKTC-----------FKCSYAGYSISPS 133 (150)
Q Consensus 95 ~~C~~C~~i~~~-~---~v~~~~~~~H~~C-----------f~C~~C~~~l~~~ 133 (150)
..|+.|...+.. + .+..=|..||..| .+|..|++.+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 579999884433 2 2334477888888 4688999887543
No 123
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=56.62 E-value=7.6 Score=20.10 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=19.5
Q ss_pred CcccccccCceeeccce-EEe--CCcccccCCcc
Q 042895 6 TQQKCKVCEKTVCPVEQ-LST--DGVVYHKSCFK 36 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~-~~~--~~~~~H~~Cf~ 36 (150)
....|..|...+..++. +.. =+..||..|+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~ 37 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVD 37 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHH
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHH
Confidence 44579999888865542 222 35567777763
No 124
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=56.30 E-value=7.8 Score=22.57 Aligned_cols=35 Identities=9% Similarity=-0.043 Sum_probs=26.1
Q ss_pred cCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 32 KSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 32 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
++-|.|..|...+.. ......|..||..|-.+.+.
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLL 46 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHh
Confidence 456888888877644 45556899999999877664
No 125
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=56.21 E-value=11 Score=21.72 Aligned_cols=32 Identities=16% Similarity=0.486 Sum_probs=19.0
Q ss_pred cccccccccCCCCC--cc-ccCCeeecCchhhhhh
Q 042895 35 FKCSRCKGTLKLSN--YS-SLEGVFYCKPHFEQLL 66 (150)
Q Consensus 35 f~C~~C~~~l~~~~--~~-~~~g~~yC~~c~~~~~ 66 (150)
+.|..|-.++.... +. ..=|..+|..|..+..
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHH
Confidence 45666666663322 11 1257778888887765
No 126
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=56.20 E-value=13 Score=23.36 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=16.7
Q ss_pred ccccccccCCCCCccccCCeeecCchhh
Q 042895 36 KCSRCKGTLKLSNYSSLEGVFYCKPHFE 63 (150)
Q Consensus 36 ~C~~C~~~l~~~~~~~~~g~~yC~~c~~ 63 (150)
.|..|+..-.+..-...+|.++|..|..
T Consensus 7 ~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 7 ECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCccCCcceECCCCCCcCcchhh
Confidence 3455655444433334567788998864
No 127
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=55.90 E-value=4 Score=24.02 Aligned_cols=30 Identities=20% Similarity=0.516 Sum_probs=15.5
Q ss_pred cccccccccCCCCCcc---ccCCeeecCchhhh
Q 042895 35 FKCSRCKGTLKLSNYS---SLEGVFYCKPHFEQ 64 (150)
Q Consensus 35 f~C~~C~~~l~~~~~~---~~~g~~yC~~c~~~ 64 (150)
+.|..|...|++..|+ ......+|-+|...
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~ 48 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRE 48 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHH
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHH
Confidence 4555566666555543 23444555555443
No 128
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.00 E-value=4.1 Score=22.66 Aligned_cols=14 Identities=0% Similarity=-0.297 Sum_probs=7.7
Q ss_pred CcCCcccc-eeccce
Q 042895 95 KNVLLAVK-QCPWEK 108 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~ 108 (150)
..|..|++ +|.+.+
T Consensus 12 ~~Cd~C~~~pi~G~R 26 (63)
T 2e5r_A 12 VECSYCHSESMMGFR 26 (63)
T ss_dssp SCCSSSCCCSSCSCE
T ss_pred CCCcCCCCcceecce
Confidence 35666666 455443
No 129
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=54.93 E-value=4.7 Score=25.43 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=13.0
Q ss_pred CcccccccCceeeccc
Q 042895 6 TQQKCKVCEKTVCPVE 21 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~ 21 (150)
+-..|..|++.|.-++
T Consensus 14 gRA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 14 GTAGCKKCKEKIVKGV 29 (117)
T ss_dssp SCEECTTSSCEECTTC
T ss_pred CCccchhhCcccCCCC
Confidence 4468999999998666
No 130
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=54.51 E-value=1.5 Score=22.54 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=11.8
Q ss_pred ccccCCccccccccC
Q 042895 135 YAALEGILYCKHNFS 149 (150)
Q Consensus 135 ~~~~~g~~yC~~cy~ 149 (150)
|+..+-+|||.+||+
T Consensus 22 ~mSVnTQP~CHEC~e 36 (49)
T 2eqg_A 22 FMSVNTQPLCHECSE 36 (49)
T ss_dssp BCCTTTTTSCHHHHH
T ss_pred EEEecCccchHHHHH
Confidence 445689999999984
No 131
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.92 E-value=14 Score=20.73 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=23.2
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 19 EVTCPICLELLTQ-PLSLDCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHH
T ss_pred CCCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHH
Confidence 3677888777644 33346788899999887654
No 132
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.80 E-value=5.1 Score=22.08 Aligned_cols=27 Identities=11% Similarity=0.427 Sum_probs=14.7
Q ss_pred cccccccCceeeccceEEeCCcccccCCc
Q 042895 7 QQKCKVCEKTVCPVEQLSTDGVVYHKSCF 35 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~~~~~~~~~~H~~Cf 35 (150)
...|..|...+.. .+..=+..||..|+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~~Ci 41 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQKCI 41 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECHHHH
T ss_pred CCCCeeCCcCccC--cccCCCCcccHHHH
Confidence 3467777776643 33334445555554
No 133
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=53.23 E-value=12 Score=20.24 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=18.6
Q ss_pred cccccccc-cCCCCC---ccccCCeeecCchhhhhhc
Q 042895 35 FKCSRCKG-TLKLSN---YSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 35 f~C~~C~~-~l~~~~---~~~~~g~~yC~~c~~~~~~ 67 (150)
+.|..|.. .+.... ....=|..+|..|..+.+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~ 40 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV 40 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH
Confidence 34556655 332222 2345677788888877653
No 134
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.79 E-value=7.4 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.569 Sum_probs=23.7
Q ss_pred CcccccccCceeec-----------cc-e-E-EeCCcccccCCcc--------cccccccC
Q 042895 6 TQQKCKVCEKTVCP-----------VE-Q-L-STDGVVYHKSCFK--------CSRCKGTL 44 (150)
Q Consensus 6 ~~~~C~~C~~~I~~-----------~~-~-~-~~~~~~~H~~Cf~--------C~~C~~~l 44 (150)
....|+.|...+.. ++ . + ..=+..||..|+. |..|+.++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCc
Confidence 44568888887743 22 2 2 2256678888873 66666555
No 135
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.70 E-value=12 Score=21.18 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=27.6
Q ss_pred CcCCcccceeccceeeeCCcccccccc--------ccccCCcccC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF--------KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf--------~C~~C~~~l~ 131 (150)
..|+.|...+....+..=+..||..|+ +|..|+..+.
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 579999885544445555888888886 5999999874
No 136
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=51.21 E-value=14 Score=22.17 Aligned_cols=35 Identities=9% Similarity=-0.163 Sum_probs=26.2
Q ss_pred cCCcccccccccCCCCCccccCC-eeecCchhhhhhc
Q 042895 32 KSCFKCSRCKGTLKLSNYSSLEG-VFYCKPHFEQLLK 67 (150)
Q Consensus 32 ~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~c~~~~~~ 67 (150)
++-|.|..|...+.+ ......| ..||..|..+.+.
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~ 55 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLL 55 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHH
Confidence 556889998877744 4555677 9999999887764
No 137
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=50.92 E-value=8.9 Score=22.55 Aligned_cols=27 Identities=22% Similarity=0.573 Sum_probs=15.2
Q ss_pred ccccccCceeeccceEEeCCcccccCCcccccccccCC
Q 042895 8 QKCKVCEKTVCPVEQLSTDGVVYHKSCFKCSRCKGTLK 45 (150)
Q Consensus 8 ~~C~~C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~~l~ 45 (150)
..|+.|..+|... +. -+.|..|++.+.
T Consensus 3 ~~CP~C~~~l~~~------~~-----~~~C~~C~~~~~ 29 (81)
T 2jrp_A 3 ITCPVCHHALERN------GD-----TAHCETCAKDFS 29 (81)
T ss_dssp CCCSSSCSCCEEC------SS-----EEECTTTCCEEE
T ss_pred CCCCCCCCccccC------CC-----ceECccccccCC
Confidence 4577887776521 22 234677776553
No 138
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.55 E-value=12 Score=21.06 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=22.8
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 19 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecw_A 19 EVTCPICLELLKE-PVSADCNHSFCRACITLNYE 51 (85)
T ss_dssp TTSCTTTCSCCSS-CEECTTSCCBCHHHHHHHHH
T ss_pred CCCCcCCChhhCc-ceeCCCCCHHHHHHHHHHHH
Confidence 3677888776644 23445778899999887665
No 139
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=50.44 E-value=10 Score=22.91 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=23.0
Q ss_pred CcccccccccCCCCCcc-ccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYS-SLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~-~~~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+.. ... ..=|..||..|..+.+.
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHH
Confidence 3667778776644 333 36788899999887765
No 140
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.25 E-value=16 Score=21.99 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=21.7
Q ss_pred cccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 35 FKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 35 f~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
+.|..|...+.. .....=|..||..|..+.+.
T Consensus 22 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 22 LECPICLELIKE-PVSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp TSCSSSCCCCSS-CCBCTTSCCCCSHHHHHHHH
T ss_pred CCCcccChhhcC-eEECCCCCHHHHHHHHHHHH
Confidence 467777666543 23345678899999887765
No 141
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=49.60 E-value=13 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=24.2
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+........=|..||..|..+.+.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH
Confidence 4578888777754322336788999999888765
No 142
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=49.40 E-value=21 Score=20.14 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=26.4
Q ss_pred CcCCcccceeccceeeeCC-----ccccccccccccCCcccCCCCccccCCcccccccc
Q 042895 95 KNVLLAVKQCPWEKVAAES-----QASHKTCFKCSYAGYSISPSNYAALEGILYCKHNF 148 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy 148 (150)
..| .|+++..+++|.-.+ .-||..|.. |... ..+.-||..|-
T Consensus 17 ~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg-------l~~~----p~g~w~Cp~C~ 63 (71)
T 1wen_A 17 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCS 63 (71)
T ss_dssp CCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT-------CSSC----CSSCCCCTTTS
T ss_pred CEE-ECCCCCCCCEeEeeCCCCCCccEecccCC-------cCcC----CCCCEECCCCC
Confidence 567 698865677666555 457988875 3211 23667787774
No 143
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=49.30 E-value=3.8 Score=25.64 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.8
Q ss_pred CcccccccCceeeccc
Q 042895 6 TQQKCKVCEKTVCPVE 21 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~ 21 (150)
+-..|..|++.|..++
T Consensus 18 ~Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 18 NRSTCKGCMEKIEKGQ 33 (111)
T ss_dssp SCCBCTTTCCBCCTTC
T ss_pred CCccccccCCCccCCc
Confidence 4568999999997665
No 144
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=48.83 E-value=3.7 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.509 Sum_probs=12.7
Q ss_pred CcccccccCceeeccc
Q 042895 6 TQQKCKVCEKTVCPVE 21 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~ 21 (150)
+-..|..|++.|..++
T Consensus 37 ~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 37 GRASCKKCSESIPKDS 52 (116)
T ss_dssp SCCBCTTTCCBCCTTS
T ss_pred CCccCcccCCccCCCC
Confidence 4468999999997665
No 145
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=48.59 E-value=12 Score=19.42 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=22.8
Q ss_pred CCcccc-eeccceeeeC--CccccccccccccCCcccCCCCccccCCcccccccc
Q 042895 97 VLLAVK-QCPWEKVAAE--SQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNF 148 (150)
Q Consensus 97 C~~C~~-i~~~~~v~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy 148 (150)
|..|++ -..++.|.-. ++.||..|..= +|. ...+|.-||..|-
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p-----~l~----~~P~g~W~C~~C~ 48 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRP-----ALY----EVPDGEWQCPACQ 48 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCT-----TCC----SCCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCC-----CcC----CCCCCcEECcCcc
Confidence 666666 3233334322 46688888541 121 1235677787764
No 146
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=48.36 E-value=12 Score=22.31 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=22.3
Q ss_pred cccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 35 FKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 35 f~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
+.|..|...+........=|..||..|..+.+.
T Consensus 23 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLRDARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCccccCccccCCCCChhhHHHHHHHHH
Confidence 567778777643222255688899999877665
No 147
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=45.94 E-value=17 Score=20.53 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=24.5
Q ss_pred CcCCcccceeccc-eeeeC--CccccccccccccCCcccCCCCccccCCccccccc
Q 042895 95 KNVLLAVKQCPWE-KVAAE--SQASHKTCFKCSYAGYSISPSNYAALEGILYCKHN 147 (150)
Q Consensus 95 ~~C~~C~~i~~~~-~v~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c 147 (150)
..|..|++...++ +|.-. +.-||..|.. |.. ....++..||..|
T Consensus 19 ~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-------~~~--~~~~~~~w~C~~C 65 (75)
T 2k16_A 19 WICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-------IMA--APPEEMQWFCPKC 65 (75)
T ss_dssp ECBTTTTBCCSSCCEEECSSSSSEEEHHHHT-------CSS--CCCSSSCCCCTTT
T ss_pred cCCCCCCCCCCCCCEEEcCCCCcccccccCC-------CCc--cCCCCCCEEChhc
Confidence 5699998854453 44433 3456887753 111 1122466777766
No 148
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=43.80 E-value=8.9 Score=23.86 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=27.9
Q ss_pred CcCCcccceeccceeeeCCcccccccc---------ccccCCcccCC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF---------KCSYAGYSISP 132 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf---------~C~~C~~~l~~ 132 (150)
..|+.|..++...++..=|..||..|. .|..|+..+..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 469999885544444555788888886 79999998854
No 149
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.42 E-value=20 Score=18.76 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=22.8
Q ss_pred CcCCcccceeccceeeeCCcccccccc-----ccccCCcccC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF-----KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf-----~C~~C~~~l~ 131 (150)
..|+.|...+..-.+..=+..|+..|. +|..|+..+.
T Consensus 7 ~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWP 48 (56)
T ss_dssp SSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSS
T ss_pred CCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEee
Confidence 458888774433334445666777774 5777777663
No 150
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=43.28 E-value=24 Score=24.86 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=27.3
Q ss_pred ccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 31 HKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 31 H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
-+.-|.|..|...+.. ......|..||..|..+.+.
T Consensus 205 ~~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~ 240 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 240 (281)
T ss_dssp CCSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHH
T ss_pred CCcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHH
Confidence 3467889999887744 45566899999999887664
No 151
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.96 E-value=26 Score=20.90 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=26.5
Q ss_pred CcCCcccceeccceeeeCC-----ccccccccccccCCcccCCCCccccCCcccccccc
Q 042895 95 KNVLLAVKQCPWEKVAAES-----QASHKTCFKCSYAGYSISPSNYAALEGILYCKHNF 148 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy 148 (150)
..| .|+++..+++|.-.+ .-||..|.. |... ..+.-||..|-
T Consensus 37 ~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg-------l~~~----p~g~W~Cp~C~ 83 (91)
T 1weu_A 37 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG-------LTTK----PRGKWFCPRCS 83 (91)
T ss_dssp BCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT-------CSSC----CCSSCCCTTTC
T ss_pred cEE-ECCCCCCCCEeEecCCCCCCCCEecccCC-------cCcC----CCCCEECcCcc
Confidence 567 898866677666555 346888865 3211 23667887774
No 152
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=42.40 E-value=8.6 Score=23.75 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=28.4
Q ss_pred CcCCcccceeccceeeeCCcccccccc---------ccccCCcccCCC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF---------KCSYAGYSISPS 133 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf---------~C~~C~~~l~~~ 133 (150)
..|+.|..++...++..=|..|+..|+ +|..|+..+...
T Consensus 19 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 469999885444444555788888886 899999988543
No 153
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.29 E-value=39 Score=19.37 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=25.4
Q ss_pred CcCCcccc-eeccceeeeC-C-----cccccccc----------ccccCCcccCC
Q 042895 95 KNVLLAVK-QCPWEKVAAE-S-----QASHKTCF----------KCSYAGYSISP 132 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~-~-----~~~H~~Cf----------~C~~C~~~l~~ 132 (150)
..|..|.. .-.++.+... . +.||.+|+ +|..|+..+..
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 67999987 4334444322 2 78999996 58888887743
No 154
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=42.07 E-value=10 Score=24.21 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=27.4
Q ss_pred cCCcccceeccceeeeCCcccccccc--------ccccCCcccCCC
Q 042895 96 NVLLAVKQCPWEKVAAESQASHKTCF--------KCSYAGYSISPS 133 (150)
Q Consensus 96 ~C~~C~~i~~~~~v~~~~~~~H~~Cf--------~C~~C~~~l~~~ 133 (150)
.|+.|...+..-++..=|..||..|. .|..|.+.+...
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred CCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 59999885444444556888888885 499999888543
No 155
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.73 E-value=13 Score=20.86 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=16.8
Q ss_pred cccccccCceeeccc---eEEeCCcccc
Q 042895 7 QQKCKVCEKTVCPVE---QLSTDGVVYH 31 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~---~~~~~~~~~H 31 (150)
..+|.-|+.+|+++. .|..+++.++
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 31 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLF 31 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEE
Confidence 457888888888876 3344555554
No 156
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=41.69 E-value=16 Score=21.39 Aligned_cols=14 Identities=0% Similarity=-0.451 Sum_probs=10.1
Q ss_pred CcCCcccc-eeccce
Q 042895 95 KNVLLAVK-QCPWEK 108 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~ 108 (150)
..|..|++ +|.+.+
T Consensus 22 ~~Cd~C~~~pI~G~R 36 (82)
T 2fc7_A 22 FKCDNCGIEPIQGVR 36 (82)
T ss_dssp CCCSSSCCSSEESCE
T ss_pred CCCCCCCCCcceece
Confidence 57999987 666654
No 157
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=40.92 E-value=13 Score=21.02 Aligned_cols=50 Identities=18% Similarity=0.427 Sum_probs=30.3
Q ss_pred CcccccccCcee--eccceEEeC--CcccccCCcccccccccCCCCCccccCCeeecCchhhhhh
Q 042895 6 TQQKCKVCEKTV--CPVEQLSTD--GVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLL 66 (150)
Q Consensus 6 ~~~~C~~C~~~I--~~~~~~~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~ 66 (150)
....|..|++.- ..++.|.-. +..||..|..-. + ..+|..||..|..+..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~-----~------vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP-----Y------IPEGQWLCRHCLQSRA 68 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS-----S------CCSSCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC-----c------CCCCCcCCccCcCcCc
Confidence 456799998764 223333222 346888776432 1 3467889999976543
No 158
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=40.88 E-value=12 Score=21.04 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=15.6
Q ss_pred cccccccCceeeccc---eEEeCCcccc
Q 042895 7 QQKCKVCEKTVCPVE---QLSTDGVVYH 31 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~---~~~~~~~~~H 31 (150)
..+|.-|+.+|+++. .|..+++.++
T Consensus 3 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (66)
T 1vq8_U 3 TRECDYCGTDIEPGTGTMFVHKDGATTH 30 (66)
T ss_dssp -CBCTTTCCBCCSSCCEEEECTTSCEEE
T ss_pred eeEecCcCCcccCCCceEEEeeCCcEEE
Confidence 356888888888876 2344555554
No 159
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=40.50 E-value=34 Score=20.95 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=24.9
Q ss_pred CcCCcccc-eec-cceeee--CCccccccccccccCCcccCCCCccccCCcccccccc
Q 042895 95 KNVLLAVK-QCP-WEKVAA--ESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNF 148 (150)
Q Consensus 95 ~~C~~C~~-i~~-~~~v~~--~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy 148 (150)
..|..|+. ... ++.|.- =++.||..|..= +|. ...+|.-+|..|-
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p-----~l~----~~P~~~W~C~~C~ 110 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDP-----PLT----RMPKGMWICQICR 110 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSS-----CCS----SCCSSCCCCTTTS
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCC-----CCC----CCCCCCeECCCCC
Confidence 56888886 222 233332 257799988541 121 2345666777663
No 160
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.46 E-value=8.7 Score=24.84 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.8
Q ss_pred CcccccccCceeeccc
Q 042895 6 TQQKCKVCEKTVCPVE 21 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~ 21 (150)
+-..|..|++.|.-++
T Consensus 26 gRA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 26 NRSTCKGCMEKIEKGQ 41 (134)
T ss_dssp SCCBCSSSCCBCCTTS
T ss_pred CCccchhcCCcccCCC
Confidence 3468999999998666
No 161
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=40.18 E-value=17 Score=20.44 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=12.7
Q ss_pred cccCCeeecCchhhhhh
Q 042895 50 SSLEGVFYCKPHFEQLL 66 (150)
Q Consensus 50 ~~~~g~~yC~~c~~~~~ 66 (150)
..=+|.+||..||...-
T Consensus 23 ~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 23 AGCDGDLYCARCFREGH 39 (67)
T ss_dssp TTTTSEEECSSHHHHHT
T ss_pred cCCCCceehHHHHHHHc
Confidence 34467899999997654
No 162
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.73 E-value=37 Score=17.88 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=26.4
Q ss_pred CcCCcccceeccceeee--CCccccccccccccCCcccCCCCccccCCccccccccCC
Q 042895 95 KNVLLAVKQCPWEKVAA--ESQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNFSQ 150 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~--~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~~ 150 (150)
..|..|++. ++.|.- =.+.||..|..= +|. .+..+.-+|..|-.|
T Consensus 10 ~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~p-----pl~----~~p~g~W~C~~C~~q 56 (56)
T 2yql_A 10 DFCSVCRKS--GQLLMCDTCSRVYHLDCLDP-----PLK----TIPKGMWICPRCQDQ 56 (56)
T ss_dssp CSCSSSCCS--SCCEECSSSSCEECSSSSSS-----CCC----SCCCSSCCCHHHHCC
T ss_pred CCCccCCCC--CeEEEcCCCCcceECccCCC-----CcC----CCCCCceEChhhhCc
Confidence 568888762 344432 357789988651 221 123567788877654
No 163
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.43 E-value=16 Score=19.45 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=23.6
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
-+.|..|...+.. .....=|..||..|..+.+.
T Consensus 20 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQK-PVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCSS-CEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhCC-eEEeCCCCcchHHHHHHHHH
Confidence 4677888777654 33446788899999887764
No 164
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=39.37 E-value=13 Score=20.70 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=7.0
Q ss_pred ccccCCcccCC
Q 042895 122 KCSYAGYSISP 132 (150)
Q Consensus 122 ~C~~C~~~l~~ 132 (150)
+|..|+..+..
T Consensus 55 ~CP~Cr~~~~~ 65 (79)
T 2egp_A 55 SCPVCGISYSF 65 (79)
T ss_dssp CCSSSCCCCCS
T ss_pred cCCCCCCcCCH
Confidence 46777777643
No 165
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=38.71 E-value=19 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=24.0
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
=|.|..|...+.. .....-|..||..|..+.+.
T Consensus 18 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 18 KYECPICLMALRE-AVQTPCGHRFCKACIIKSIR 50 (170)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHH
Confidence 4678888877754 34457888899999887664
No 166
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=38.38 E-value=15 Score=20.84 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=15.4
Q ss_pred CcCCcccceeccceeeeCCccccccccccccCCcc
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYS 129 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~ 129 (150)
.+|..|+..+... . .+=.+|..|+..
T Consensus 29 Y~C~~CG~~~e~~---~------~d~irCp~CG~R 54 (70)
T 1twf_L 29 YICAECSSKLSLS---R------TDAVRCKDCGHR 54 (70)
T ss_dssp EECSSSCCEECCC---T------TSTTCCSSSCCC
T ss_pred EECCCCCCcceeC---C------CCCccCCCCCce
Confidence 6899998832211 1 122468888873
No 167
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=38.22 E-value=16 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=15.5
Q ss_pred cccccccCceeeccceE--EeCCcccccCCc
Q 042895 7 QQKCKVCEKTVCPVEQL--STDGVVYHKSCF 35 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~~~--~~~~~~~H~~Cf 35 (150)
...|..|...+..++.+ ..=+..||..|+
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci 70 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCV 70 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHH
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHH
Confidence 34577777766544422 223445665554
No 168
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=38.10 E-value=11 Score=19.29 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=5.7
Q ss_pred cCCccccccc
Q 042895 138 LEGILYCKHN 147 (150)
Q Consensus 138 ~~g~~yC~~c 147 (150)
.+|..+|.+|
T Consensus 19 p~G~~LCNaC 28 (43)
T 2vut_I 19 PEGQPLCNAC 28 (43)
T ss_dssp TTSCEECHHH
T ss_pred CCCCcccHHH
Confidence 3455666655
No 169
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.88 E-value=27 Score=20.56 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=25.1
Q ss_pred CCcccccccccCCCCCccc-cCCeeecCchhhhhhc
Q 042895 33 SCFKCSRCKGTLKLSNYSS-LEGVFYCKPHFEQLLK 67 (150)
Q Consensus 33 ~Cf~C~~C~~~l~~~~~~~-~~g~~yC~~c~~~~~~ 67 (150)
.=|.|..|...+.. .... ..|..||..|-.+.+.
T Consensus 6 ~~~~CPI~~~~~~d-PV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 6 SGFTCPITKEEMKK-PVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp SCCBCTTTCSBCSS-EEEESSSCCEEEHHHHHHHHH
T ss_pred cEeECcCcCchhcC-CEEcCCCCCeecHHHHHHHHH
Confidence 34788888877754 4555 5899999999877765
No 170
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=35.54 E-value=17 Score=14.75 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=8.7
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 578888887743
No 171
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=35.49 E-value=18 Score=18.74 Aligned_cols=8 Identities=0% Similarity=-0.031 Sum_probs=3.9
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
..|..|+.
T Consensus 5 ~~C~~C~t 12 (46)
T 1gnf_A 5 RECVNCGA 12 (46)
T ss_dssp CCCTTTCC
T ss_pred CCCCCcCC
Confidence 34555544
No 172
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=35.45 E-value=15 Score=23.89 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=28.9
Q ss_pred CcCCcccceeccceeeeCCcccccccc---------ccccCCcccCCC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF---------KCSYAGYSISPS 133 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf---------~C~~C~~~l~~~ 133 (150)
..|+.|..++....+..=|..|+..|. .|..|...+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 469999885555445555788888884 799999988544
No 173
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=35.25 E-value=16 Score=22.17 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=15.4
Q ss_pred CCcccccccc-------------ccccCCcccCC
Q 042895 112 ESQASHKTCF-------------KCSYAGYSISP 132 (150)
Q Consensus 112 ~~~~~H~~Cf-------------~C~~C~~~l~~ 132 (150)
=+..||..|+ .|..|...+..
T Consensus 61 C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 61 CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3677888884 68888887743
No 174
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=33.96 E-value=18 Score=22.02 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=23.9
Q ss_pred CcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 34 CFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 34 Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
=+.|..|...+.. .....=|..||..|..+.+.
T Consensus 23 ~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 23 SISCQICEHILAD-PVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp HTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHh
Confidence 3678888777643 33456889999999887664
No 175
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.08 E-value=30 Score=19.31 Aligned_cols=25 Identities=24% Similarity=0.739 Sum_probs=10.9
Q ss_pred cccccccCCCCCccccCCeeecCch
Q 042895 37 CSRCKGTLKLSNYSSLEGVFYCKPH 61 (150)
Q Consensus 37 C~~C~~~l~~~~~~~~~g~~yC~~c 61 (150)
|..|++.++-..|.-+=|..||..+
T Consensus 18 C~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 18 CTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CTTTCCCCCTTCEECSSSCEECTTT
T ss_pred ChhhCCccCccCEEeecCCEecccc
Confidence 3345444433333334444555443
No 176
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=32.82 E-value=19 Score=14.81 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=8.7
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 678888887743
No 177
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=32.19 E-value=48 Score=17.70 Aligned_cols=49 Identities=35% Similarity=0.614 Sum_probs=29.4
Q ss_pred cccccccCceeeccceEE--eCCcccccCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 7 QQKCKVCEKTVCPVEQLS--TDGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~~~~--~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
...|..|++. ++.+. .=.+.||..|..- +|.. ...|..+|..|..+...
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~p-----pl~~----~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDP-----PLKT----IPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSS-----CCSS----CCCSCCCCHHHHHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCC-----CcCC----CCCCceEChhccChhhc
Confidence 4568888873 44442 2345789887642 2321 23567889998765543
No 178
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=31.73 E-value=19 Score=20.26 Aligned_cols=8 Identities=0% Similarity=-0.408 Sum_probs=6.5
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
-.|+.|+.
T Consensus 11 L~CP~ck~ 18 (67)
T 2jny_A 11 LACPKDKG 18 (67)
T ss_dssp CBCTTTCC
T ss_pred hCCCCCCC
Confidence 57888887
No 179
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=31.58 E-value=9.4 Score=23.27 Aligned_cols=33 Identities=12% Similarity=-0.033 Sum_probs=17.5
Q ss_pred CcCCcccceeccceeeeCCccccccccccccCCcccCCC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSISPS 133 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~ 133 (150)
..|+.|++++ |.+.|=|-+ =|-|..|+..++..
T Consensus 62 a~CPdC~q~L--evLkACGAv----dYFC~~chgLiSKk 94 (101)
T 2jne_A 62 ALCPDCHQPL--QVLKACGAV----DYFCQHGHGLISKK 94 (101)
T ss_dssp EECTTTCSBC--EEEEETTEE----EEEETTTTEEECTT
T ss_pred ccCcchhhHH--HHHHHhcCc----chhhccCCceeecc
Confidence 4677777632 234443311 14577777766443
No 180
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.49 E-value=32 Score=19.16 Aligned_cols=22 Identities=14% Similarity=0.487 Sum_probs=8.7
Q ss_pred cccccCCCCCccccCCeeecCc
Q 042895 39 RCKGTLKLSNYSSLEGVFYCKP 60 (150)
Q Consensus 39 ~C~~~l~~~~~~~~~g~~yC~~ 60 (150)
.|++.|+-..|.-+=|..||..
T Consensus 20 ~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 20 SCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp TTCCCCTTSCEECTTSCEECSS
T ss_pred hhCCcccccCeEeecCCEeccc
Confidence 4444433323333344444443
No 181
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=31.46 E-value=30 Score=21.11 Aligned_cols=52 Identities=17% Similarity=0.399 Sum_probs=31.3
Q ss_pred cccccccCceeeccc-eEEeC---CcccccCCcccccccccCCCCCcc----ccCCeeecCchhhhh
Q 042895 7 QQKCKVCEKTVCPVE-QLSTD---GVVYHKSCFKCSRCKGTLKLSNYS----SLEGVFYCKPHFEQL 65 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~-~~~~~---~~~~H~~Cf~C~~C~~~l~~~~~~----~~~g~~yC~~c~~~~ 65 (150)
.-.|..|+++..+.. .|.-. ...||..|.. |....+. ..+++.+|..|..+.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVg-------lt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTG-------MTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTT-------CCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCC-------cCHHHHHhhccCCCCCEECccccCcC
Confidence 346999999986543 45444 4568977742 2211111 245678899997553
No 182
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=31.33 E-value=7.8 Score=26.60 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=15.9
Q ss_pred cccccccCCcccCCCCccccCCccccccccC
Q 042895 119 TCFKCSYAGYSISPSNYAALEGILYCKHNFS 149 (150)
Q Consensus 119 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy~ 149 (150)
.=.+|+.|+...... |+++|..||.
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC------CCcCCccccC
Confidence 334577777665221 7788888875
No 183
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.29 E-value=19 Score=20.26 Aligned_cols=8 Identities=13% Similarity=-0.201 Sum_probs=6.1
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
-.|+.|+.
T Consensus 9 L~CP~ck~ 16 (68)
T 2hf1_A 9 LVCPLCKG 16 (68)
T ss_dssp CBCTTTCC
T ss_pred eECCCCCC
Confidence 46888887
No 184
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation; 3.10A {Homo sapiens} PDB: 2l30_A
Probab=31.25 E-value=10 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=0.0
Q ss_pred CcccccccCceeeccc-eEEe------------CCcccccCCcccc
Q 042895 6 TQQKCKVCEKTVCPVE-QLST------------DGVVYHKSCFKCS 38 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~-~~~~------------~~~~~H~~Cf~C~ 38 (150)
+-..|..|++.|.-++ .|.. ....||..||.=.
T Consensus 142 ~Ra~Ck~C~~kI~KgeLRig~~v~~~~~~~~G~~~~W~H~~Cf~~~ 187 (223)
T 4av1_A 142 NRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKN 187 (223)
T ss_dssp ----------------------------------------------
T ss_pred CCccccccCCccCCCCeEEeeeecCcccccCCCcceeEChhhhhch
Confidence 3467999999997665 1211 1235788898643
No 185
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.22 E-value=17 Score=14.90 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=8.0
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 56788887764
No 186
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=31.09 E-value=18 Score=18.61 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=9.3
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
+.|..|+..+..
T Consensus 25 lvC~~CG~v~~e 36 (50)
T 1pft_A 25 IVCAKCGYVIEE 36 (50)
T ss_dssp EEESSSCCBCCC
T ss_pred EECcccCCcccc
Confidence 778899887743
No 187
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=31.04 E-value=23 Score=14.70 Aligned_cols=12 Identities=8% Similarity=0.512 Sum_probs=8.9
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 678888887743
No 188
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=31.00 E-value=27 Score=19.19 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=5.4
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
..|..|++
T Consensus 21 v~C~~CKk 28 (62)
T 2das_A 21 ITCANCKK 28 (62)
T ss_dssp CBCTTTCC
T ss_pred cChhhccc
Confidence 45777777
No 189
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.86 E-value=20 Score=20.16 Aligned_cols=8 Identities=0% Similarity=-0.288 Sum_probs=6.4
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
-.|+.|+.
T Consensus 9 L~CP~ck~ 16 (68)
T 2jr6_A 9 LVCPVTKG 16 (68)
T ss_dssp CBCSSSCC
T ss_pred eECCCCCC
Confidence 57888887
No 190
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=30.60 E-value=19 Score=20.36 Aligned_cols=28 Identities=4% Similarity=0.069 Sum_probs=15.2
Q ss_pred CcCCcccceeccceeeeCCccccccccccccCCccc
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCFKCSYAGYSI 130 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf~C~~C~~~l 130 (150)
-.|+.|+..+.- ... ..=+.|..|+...
T Consensus 9 L~CP~ck~~L~~---~~~-----~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEF---QRA-----QAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEE---ETT-----TTEEEETTTTEEE
T ss_pred eECCCCCCcCEE---eCC-----CCEEEcCCCCcee
Confidence 579999872221 111 1235677776654
No 191
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=30.49 E-value=20 Score=21.80 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=23.3
Q ss_pred CcCCcccceeccceeeeCCcccccccc---------ccccCCcccC
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF---------KCSYAGYSIS 131 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf---------~C~~C~~~l~ 131 (150)
..|+.|...+..-.+..=|..|+..|+ .|..|+..+.
T Consensus 16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 458888774443333444666766664 6888888764
No 192
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.93 E-value=23 Score=14.37 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=7.7
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 56777877764
No 193
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=29.66 E-value=32 Score=19.27 Aligned_cols=44 Identities=20% Similarity=0.248 Sum_probs=25.0
Q ss_pred cCCcccc-eeccceeeeC--CccccccccccccCCcccCCCCccccCC-cccccccc
Q 042895 96 NVLLAVK-QCPWEKVAAE--SQASHKTCFKCSYAGYSISPSNYAALEG-ILYCKHNF 148 (150)
Q Consensus 96 ~C~~C~~-i~~~~~v~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g-~~yC~~cy 148 (150)
.|..|++ -..+++|.-. ++.||..|+. -+|.. +..| .-+|..|-
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~-----Ppl~~----~P~g~~W~C~~C~ 67 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD-----PPLSS----VPSEDEWYCPECR 67 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSS-----SCCSS----CCSSSCCCCTTTS
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCC-----CCcCC----CCCCCCcCCcCcc
Confidence 3667776 3444555433 4779999965 12321 2245 67777764
No 194
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=29.23 E-value=42 Score=18.56 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=16.0
Q ss_pred CcCCcccceeccceeee--CCcccccccc
Q 042895 95 KNVLLAVKQCPWEKVAA--ESQASHKTCF 121 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~--~~~~~H~~Cf 121 (150)
..|..|++ .++.|.- =++.||..|+
T Consensus 13 ~~C~vC~~--~~~ll~Cd~C~~~~H~~Cl 39 (66)
T 2lri_C 13 ARCGVCGD--GTDVLRCTHCAAAFHWRCH 39 (66)
T ss_dssp CCCTTTSC--CTTCEECSSSCCEECHHHH
T ss_pred CCcCCCCC--CCeEEECCCCCCceecccC
Confidence 56888876 2334432 2577888886
No 195
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=28.45 E-value=42 Score=22.67 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=27.1
Q ss_pred cCCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 32 KSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 32 ~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
+.-|.|..|...+.. ......|..||..|-.+.+.
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~ 138 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQ 138 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHH
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHH
Confidence 567889998877754 45567999999999877664
No 196
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.45 E-value=21 Score=20.13 Aligned_cols=8 Identities=0% Similarity=-0.172 Sum_probs=6.4
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
-.|+.|+.
T Consensus 9 L~CP~ck~ 16 (69)
T 2pk7_A 9 LACPICKG 16 (69)
T ss_dssp CCCTTTCC
T ss_pred eeCCCCCC
Confidence 57888887
No 197
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=28.21 E-value=21 Score=18.11 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=10.5
Q ss_pred ccccccCceeeccc
Q 042895 8 QKCKVCEKTVCPVE 21 (150)
Q Consensus 8 ~~C~~C~~~I~~~~ 21 (150)
..|..|++||....
T Consensus 18 RvC~~CgkPi~lsA 31 (44)
T 2lo3_A 18 RVCEKCGKPLALTA 31 (44)
T ss_dssp EECTTTCCEEETTT
T ss_pred hhhcccCCcchHHH
Confidence 36999999997443
No 198
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=28.18 E-value=73 Score=17.09 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=24.7
Q ss_pred CcCCcccceeccceeeeC--CccccccccccccCCcccCCCCccccCCcccccccc
Q 042895 95 KNVLLAVKQCPWEKVAAE--SQASHKTCFKCSYAGYSISPSNYAALEGILYCKHNF 148 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy 148 (150)
..|..|++ .++.|.-. .+.||..|..= +|. ...+|.-||..|-
T Consensus 12 ~~C~vC~~--~g~ll~CD~C~~~fH~~Cl~p-----~l~----~~p~g~W~C~~C~ 56 (61)
T 2l5u_A 12 DYCEVCQQ--GGEIILCDTCPRAYHMVCLDP-----DME----KAPEGKWSCPHCE 56 (61)
T ss_dssp SSCTTTSC--CSSEEECSSSSCEEEHHHHCT-----TCC----SCCCSSCCCTTGG
T ss_pred CCCccCCC--CCcEEECCCCChhhhhhccCC-----CCC----CCCCCceECcccc
Confidence 56888876 23444333 46788888541 121 1235677787764
No 199
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.99 E-value=13 Score=15.15 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=8.0
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 56788887774
No 200
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=27.76 E-value=22 Score=14.59 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=8.7
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 578888887743
No 201
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.49 E-value=20 Score=14.65 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=8.5
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 678888887743
No 202
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=27.31 E-value=21 Score=19.84 Aligned_cols=8 Identities=0% Similarity=-0.168 Sum_probs=5.1
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
..|..|+.
T Consensus 8 ~~C~~C~t 15 (63)
T 3dfx_A 8 TSCANCQT 15 (63)
T ss_dssp CCCTTTCC
T ss_pred CcCCCcCC
Confidence 45777765
No 203
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.18 E-value=14 Score=21.95 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=18.8
Q ss_pred CcCCcccceecccee--eeCCcccccccccc
Q 042895 95 KNVLLAVKQCPWEKV--AAESQASHKTCFKC 123 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v--~~~~~~~H~~Cf~C 123 (150)
..|..|...-..+.+ .+=+++||..|++=
T Consensus 16 ~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred cccCccccccccceeccccccccccHhhccc
Confidence 678888763233322 45578889888873
No 204
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.15 E-value=27 Score=14.26 Aligned_cols=12 Identities=17% Similarity=0.813 Sum_probs=8.6
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 578888887743
No 205
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.97 E-value=21 Score=14.59 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=7.9
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 56788887764
No 206
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=26.88 E-value=32 Score=22.90 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=18.9
Q ss_pred CcccccccCceeeccc---eEEeCCcccc
Q 042895 6 TQQKCKVCEKTVCPVE---QLSTDGVVYH 31 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~---~~~~~~~~~H 31 (150)
....|..|+..|+|+. +|..+++.|+
T Consensus 4 k~e~CsFcG~~IyPG~G~~fVr~Dgkvf~ 32 (162)
T 3iz5_Z 4 KTELCRFSGQKIYPGKGIRFIRADSQVFL 32 (162)
T ss_dssp SCEECTTTCSEECSSCSEEEECTTSCEEE
T ss_pred EEEEecCcCCcccCCCCeEEEecCCCEEE
Confidence 4567999999999987 3455566665
No 207
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.81 E-value=46 Score=19.11 Aligned_cols=26 Identities=19% Similarity=0.676 Sum_probs=13.6
Q ss_pred ccccccccCCCCCccccCCeeecCch
Q 042895 36 KCSRCKGTLKLSNYSSLEGVFYCKPH 61 (150)
Q Consensus 36 ~C~~C~~~l~~~~~~~~~g~~yC~~c 61 (150)
+|..|++.++-..|.-+=|..||..+
T Consensus 27 RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 27 RCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp BCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred cchhhcCcccccceEeccCCEecccc
Confidence 34456655544444445555666544
No 208
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=26.65 E-value=30 Score=22.98 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=18.4
Q ss_pred cccccccCceeeccc---eEEeCCcccc
Q 042895 7 QQKCKVCEKTVCPVE---QLSTDGVVYH 31 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~---~~~~~~~~~H 31 (150)
...|..|+.+|+|+. +|..+++.|+
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~ 32 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFF 32 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEE
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEE
Confidence 457999999999987 3455566665
No 209
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.86 E-value=20 Score=14.73 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=8.2
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 67888888774
No 210
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=25.35 E-value=25 Score=15.88 Aligned_cols=13 Identities=15% Similarity=0.590 Sum_probs=9.8
Q ss_pred ccccccccCCccc
Q 042895 118 KTCFKCSYAGYSI 130 (150)
Q Consensus 118 ~~Cf~C~~C~~~l 130 (150)
..|+.|..|.-.|
T Consensus 5 wsclvcaacsvel 17 (31)
T 2lbz_A 5 WSCLVCAACSVEL 17 (31)
T ss_dssp TGGGGGGGCCSCS
T ss_pred HHHHHHHHhHHHH
Confidence 3678888888765
No 211
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.02 E-value=55 Score=23.70 Aligned_cols=34 Identities=6% Similarity=0.045 Sum_probs=24.7
Q ss_pred CCcccccccccCCCCCcc-ccCCeeecCchhhhhhc
Q 042895 33 SCFKCSRCKGTLKLSNYS-SLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 33 ~Cf~C~~C~~~l~~~~~~-~~~g~~yC~~c~~~~~~ 67 (150)
.=|+|..|...+.. ... ..-|..||..|..+.+.
T Consensus 180 ~el~CPIcl~~f~D-PVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 180 IELTCPITCKPYEA-PLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp CCSBCTTTSSBCSS-EEEESSSCCEEEHHHHHHHST
T ss_pred eeeECcCccCcccC-CeeeCCCCCcccHHHHHHHHH
Confidence 34788888887744 343 36789999999887765
No 212
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=24.94 E-value=23 Score=19.85 Aligned_cols=9 Identities=0% Similarity=-0.141 Sum_probs=6.0
Q ss_pred CCcCCcccc
Q 042895 94 NKNVLLAVK 102 (150)
Q Consensus 94 ~~~C~~C~~ 102 (150)
...|..|+.
T Consensus 9 ~~~C~~C~t 17 (66)
T 4gat_A 9 PTTCTNCFT 17 (66)
T ss_dssp SCCCTTTCC
T ss_pred CCCCCCCCC
Confidence 356777776
No 213
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.78 E-value=37 Score=19.50 Aligned_cols=25 Identities=24% Similarity=0.705 Sum_probs=12.5
Q ss_pred cccccccCCCCCccccCCeeecCch
Q 042895 37 CSRCKGTLKLSNYSSLEGVFYCKPH 61 (150)
Q Consensus 37 C~~C~~~l~~~~~~~~~g~~yC~~c 61 (150)
|..|++.++-..|.-+=|..||..+
T Consensus 28 C~~CrKkvgL~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 28 CFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp CSSSCCBCGGGCEECTTSCEECSSS
T ss_pred ChhhCCcccccCeecCCCCEechhc
Confidence 4445555544444444555566544
No 214
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=24.69 E-value=93 Score=16.91 Aligned_cols=49 Identities=18% Similarity=0.486 Sum_probs=29.4
Q ss_pred CcccccccCceeeccceEEe--CCcccccCCcccccccccCCCCCccccCCeeecCchhhhhh
Q 042895 6 TQQKCKVCEKTVCPVEQLST--DGVVYHKSCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLL 66 (150)
Q Consensus 6 ~~~~C~~C~~~I~~~~~~~~--~~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~ 66 (150)
....|..|+.. ++.|.- =...||..|+.- +|. ....|..+|..|..+..
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p-----pl~----~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSP-----PLR----EIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSS-----CCS----SCCSSCCCCHHHHHTCC
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCC-----CcC----cCCCCCeECccccCccc
Confidence 34579999863 444433 345789888642 232 12457788999965543
No 215
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=24.41 E-value=30 Score=22.88 Aligned_cols=25 Identities=8% Similarity=0.155 Sum_probs=17.6
Q ss_pred cccccccCceeeccc---eEEeCCcccc
Q 042895 7 QQKCKVCEKTVCPVE---QLSTDGVVYH 31 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~---~~~~~~~~~H 31 (150)
...|..|+.+|+|+. +|..+|+.|+
T Consensus 3 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~ 30 (155)
T 3izc_Z 3 VEIDSFSGAKIYPGRGTLFVRGDSKIFR 30 (155)
T ss_dssp CEECTTTCSEECTTCCEEEECTTCCEEE
T ss_pred eeEecCcCCcccCCCCeEEEecCCCEEE
Confidence 356899999999887 3344566665
No 216
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.37 E-value=24 Score=14.45 Aligned_cols=11 Identities=45% Similarity=1.123 Sum_probs=8.0
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 56888887764
No 217
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.53 E-value=17 Score=15.15 Aligned_cols=11 Identities=9% Similarity=0.331 Sum_probs=8.2
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 67888888774
No 218
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=23.65 E-value=76 Score=17.09 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=25.4
Q ss_pred CcCCcccce-ec--cceeeeC--CccccccccccccCCcccCCCCccccCCccccccc
Q 042895 95 KNVLLAVKQ-CP--WEKVAAE--SQASHKTCFKCSYAGYSISPSNYAALEGILYCKHN 147 (150)
Q Consensus 95 ~~C~~C~~i-~~--~~~v~~~--~~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c 147 (150)
..|..|+.. .. ++.|.-. ++.||..|..= +|.. .....++.-||..|
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p-----~l~~-~~~~p~~~W~C~~C 58 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP-----HIDS-SVIDSDEKWLCRQC 58 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS-----CCCH-HHHHSSCCCCCHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC-----cccc-cccCCCCCEECCCC
Confidence 678888873 22 3344333 57799988651 1211 00114566777665
No 219
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.50 E-value=32 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=18.0
Q ss_pred cccccccCceeeccc---eEEeCCcccc
Q 042895 7 QQKCKVCEKTVCPVE---QLSTDGVVYH 31 (150)
Q Consensus 7 ~~~C~~C~~~I~~~~---~~~~~~~~~H 31 (150)
...|..|+..|+++. +|..++..|+
T Consensus 3 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~ 30 (157)
T 2zkr_u 3 VELCSFSGYKIYPGHGRRYARTDGKVFQ 30 (157)
T ss_dssp -CBCTTTCCBCCTTCCEEEECTTSCEEE
T ss_pred eeeecCcCCcccCCCceEEEeeCCcEEE
Confidence 357999999999987 3455666665
No 220
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=23.10 E-value=12 Score=18.68 Aligned_cols=8 Identities=0% Similarity=-0.421 Sum_probs=4.7
Q ss_pred CcCCcccc
Q 042895 95 KNVLLAVK 102 (150)
Q Consensus 95 ~~C~~C~~ 102 (150)
..|.+|++
T Consensus 10 ~~C~~C~~ 17 (39)
T 2i5o_A 10 VPCEKCGS 17 (39)
T ss_dssp EECTTTCC
T ss_pred cccccccC
Confidence 45666665
No 221
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.99 E-value=33 Score=15.22 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=8.3
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 77888887764
No 222
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.94 E-value=35 Score=14.94 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=8.6
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 10 ~~C~~C~k~f~~ 21 (36)
T 2elr_A 10 HLCDMCGKKFKS 21 (36)
T ss_dssp CBCTTTCCBCSS
T ss_pred eecCcCCCCcCc
Confidence 678888887743
No 223
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.65 E-value=59 Score=18.57 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=22.5
Q ss_pred CcCCcccc-eeccceeeeCCccccccccccccCCcccCCCCccc
Q 042895 95 KNVLLAVK-QCPWEKVAAESQASHKTCFKCSYAGYSISPSNYAA 137 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~~~~~H~~Cf~C~~C~~~l~~~~~~~ 137 (150)
..|+.|++ .+....+ .. ..|..|++.+.++.|..
T Consensus 28 y~C~fCgk~~vkR~a~----GI-----W~C~~C~~~~AGGAy~~ 62 (73)
T 1ffk_W 28 YKCPVCGFPKLKRAST----SI-----WVCGHCGYKIAGGAYTP 62 (73)
T ss_pred ccCCCCCCceeEEEEe----EE-----EECCCCCcEEECCCccc
Confidence 78999998 4332222 22 45889999987776654
No 224
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.30 E-value=50 Score=16.80 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=16.0
Q ss_pred CcCCcccceeccceeeeCCcccccccc
Q 042895 95 KNVLLAVKQCPWEKVAAESQASHKTCF 121 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~~~~H~~Cf 121 (150)
..|+.|...+....+..=+..||..|+
T Consensus 16 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci 42 (58)
T 2ecj_A 16 ASCSVCLEYLKEPVIIECGHNFCKACI 42 (58)
T ss_dssp CBCSSSCCBCSSCCCCSSCCCCCHHHH
T ss_pred CCCccCCcccCccEeCCCCCccCHHHH
Confidence 579999884444334444555665554
No 225
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.85 E-value=19 Score=14.96 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=8.2
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2lvt_A 3 CQCVMCGKAFT 13 (29)
Confidence 57888888774
No 226
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.20 E-value=29 Score=15.05 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=8.8
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 2elx_A 8 YVCALCLKKFVS 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCcchhCC
Confidence 678888887743
No 227
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.87 E-value=27 Score=15.15 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=8.3
Q ss_pred cccccCCcccC
Q 042895 121 FKCSYAGYSIS 131 (150)
Q Consensus 121 f~C~~C~~~l~ 131 (150)
|.|..|++.+.
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 67888888763
No 228
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=21.63 E-value=46 Score=17.88 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=18.5
Q ss_pred CcCCcccceeccceeeeCC-----ccccccccc
Q 042895 95 KNVLLAVKQCPWEKVAAES-----QASHKTCFK 122 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~-----~~~H~~Cf~ 122 (150)
..| .|+++..+++|.-.+ .-||..|..
T Consensus 10 ~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg 41 (59)
T 3c6w_A 10 TYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD 41 (59)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGT
T ss_pred cEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC
Confidence 456 788865677666555 457988865
No 229
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.54 E-value=68 Score=17.36 Aligned_cols=33 Identities=21% Similarity=0.555 Sum_probs=21.1
Q ss_pred CCcccccc--cCceeeccceEEeCCcccccCCcccccccc
Q 042895 5 GTQQKCKV--CEKTVCPVEQLSTDGVVYHKSCFKCSRCKG 42 (150)
Q Consensus 5 ~~~~~C~~--C~~~I~~~~~~~~~~~~~H~~Cf~C~~C~~ 42 (150)
.+..+|.+ |+-.|.+--.+...++.| +|..|+.
T Consensus 7 ~~pvRC~r~~CraylNP~~~~~~~~~~W-----~C~~C~~ 41 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLNPLCQVDYRAKLW-----ACNFCYQ 41 (59)
T ss_dssp CCCCBCSCTTTCCBCCTTSEEEGGGTEE-----ECSSSCC
T ss_pred CCCcccCCCCCCeEECCceEEECCCCEE-----EcccCCC
Confidence 45678887 888887544555555555 5666654
No 230
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.38 E-value=31 Score=15.04 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=8.8
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 8 ~~C~~C~k~f~~ 19 (35)
T 1srk_A 8 FVCRICLSAFTT 19 (35)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCCcccCC
Confidence 678888887743
No 231
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.36 E-value=37 Score=14.80 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=8.7
Q ss_pred cccccCCcccCC
Q 042895 121 FKCSYAGYSISP 132 (150)
Q Consensus 121 f~C~~C~~~l~~ 132 (150)
|.|..|++.+..
T Consensus 3 ~~C~~C~k~F~~ 14 (33)
T 1rim_A 3 FACPECPKRFMR 14 (33)
T ss_dssp CCCSSSCCCCSS
T ss_pred ccCCCCCchhCC
Confidence 678888887743
No 232
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=21.21 E-value=32 Score=16.32 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=9.7
Q ss_pred ccccccCCcccCC
Q 042895 120 CFKCSYAGYSISP 132 (150)
Q Consensus 120 Cf~C~~C~~~l~~ 132 (150)
=|.|..|++.+..
T Consensus 8 p~~C~~CgK~F~~ 20 (36)
T 1fv5_A 8 RFMCLPCGIAFSS 20 (36)
T ss_dssp CCEETTTTEECSC
T ss_pred CeECCCCCCccCC
Confidence 3788888888743
No 233
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=20.90 E-value=34 Score=18.07 Aligned_cols=7 Identities=14% Similarity=-0.050 Sum_probs=3.8
Q ss_pred cCCcccc
Q 042895 96 NVLLAVK 102 (150)
Q Consensus 96 ~C~~C~~ 102 (150)
+|.-|++
T Consensus 13 ~CSFCGk 19 (51)
T 2ds5_A 13 YCSFCGK 19 (51)
T ss_dssp BCTTTCC
T ss_pred EecCCCC
Confidence 4555555
No 234
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=20.89 E-value=25 Score=22.53 Aligned_cols=34 Identities=24% Similarity=0.594 Sum_probs=25.7
Q ss_pred CCcccccccccCCCCCccccCCeeecCchhhhhhc
Q 042895 33 SCFKCSRCKGTLKLSNYSSLEGVFYCKPHFEQLLK 67 (150)
Q Consensus 33 ~Cf~C~~C~~~l~~~~~~~~~g~~yC~~c~~~~~~ 67 (150)
+-|.|..|...+... ....=|..||..|..+.+.
T Consensus 30 ~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 30 AKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGG
T ss_pred cCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHh
Confidence 457889998877543 5567889999999888664
No 235
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.59 E-value=98 Score=16.05 Aligned_cols=11 Identities=0% Similarity=-0.463 Sum_probs=6.9
Q ss_pred CcCCcccc-eec
Q 042895 95 KNVLLAVK-QCP 105 (150)
Q Consensus 95 ~~C~~C~~-i~~ 105 (150)
-+|+-|+- |+.
T Consensus 24 IrCpyCGyrii~ 35 (48)
T 4ayb_P 24 VRCPYCGYKIIF 35 (48)
T ss_dssp SCCTTTCCSCEE
T ss_pred cccCccCcEEEE
Confidence 56777776 543
No 236
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=20.44 E-value=50 Score=17.95 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=26.0
Q ss_pred CcCCcccceeccceeeeCC-----ccccccccccccCCcccCCCCccccCCcccccccc
Q 042895 95 KNVLLAVKQCPWEKVAAES-----QASHKTCFKCSYAGYSISPSNYAALEGILYCKHNF 148 (150)
Q Consensus 95 ~~C~~C~~i~~~~~v~~~~-----~~~H~~Cf~C~~C~~~l~~~~~~~~~g~~yC~~cy 148 (150)
..| .|+++..+++|.-.+ .-||..|.. |... ..+.-||..|-
T Consensus 12 ~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg-------l~~~----p~~~w~Cp~C~ 58 (62)
T 2g6q_A 12 TYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS-------LTYK----PKGKWYCPKCR 58 (62)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEETGGGT-------CSSC----CSSCCCCHHHH
T ss_pred cEE-ECCCCCCCCeeeeeCCCCCcccEecccCC-------cCcC----CCCCEECcCcc
Confidence 456 788866677666555 457988865 3211 24677777663
No 237
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=20.36 E-value=63 Score=18.46 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=16.7
Q ss_pred cCCcccc-eeccceeeeC--Cccccccccc
Q 042895 96 NVLLAVK-QCPWEKVAAE--SQASHKTCFK 122 (150)
Q Consensus 96 ~C~~C~~-i~~~~~v~~~--~~~~H~~Cf~ 122 (150)
.|..|++ .-.++.|.-. ++.||..|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD 57 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSS
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCC
Confidence 3777777 4344444333 5779999865
No 238
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.21 E-value=37 Score=15.06 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=9.5
Q ss_pred ccccccCCcccCC
Q 042895 120 CFKCSYAGYSISP 132 (150)
Q Consensus 120 Cf~C~~C~~~l~~ 132 (150)
-|.|..|++.+..
T Consensus 9 ~~~C~~C~k~f~~ 21 (37)
T 2elp_A 9 AMKCPYCDFYFMK 21 (37)
T ss_dssp CEECSSSSCEECS
T ss_pred CeECCCCChhhcc
Confidence 3778888887744
No 239
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.06 E-value=79 Score=18.63 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=17.1
Q ss_pred CcCCcccc-eeccceeeeC--Cccccccccc
Q 042895 95 KNVLLAVK-QCPWEKVAAE--SQASHKTCFK 122 (150)
Q Consensus 95 ~~C~~C~~-i~~~~~v~~~--~~~~H~~Cf~ 122 (150)
..|..|++ -....+|.-. ++.||..|+.
T Consensus 17 ~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 17 YICQVCSRGDEDDKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCSSSCCSGGGGGCEECTTTCCEECSSSSS
T ss_pred CCCccCCCcCCCCCEEEcCCCCchhccccCC
Confidence 46888887 3333444433 4668888875
Done!