BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042896
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 30/238 (12%)
Query: 1 NRR-HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPH---------- 49
NR+ HVV++PYP QGHINPL + AK L +G T T Y K +
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 50 VGVEPISDGFD--EGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYKNSSF--PVNCVVYD 105
E I DG EG +++ +S N + EL+ R +S+ PV C+V D
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 106 SFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLT----LPVK---------LED 152
+ + + A+E+ L +F++SA C++ MH +P K LE
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSA--CSLLNVMHFRSFVERGIIPFKDESYLTNGCLET 183
Query: 153 TPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEV 210
IPGL + D+ F++ L + ++K I NTF ELE +V
Sbjct: 184 KVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 13/162 (8%)
Query: 55 ISDGFDEG-GYAQAKNEDLYLKSFEDNGSRTLSE-LIKRYKNSSFPVNCVVYDSFLPWAL 112
ISDG EG +A ED+ L F + + ++ + PV+C+V D+F+ +A
Sbjct: 69 ISDGVPEGYVFAGRPQEDIEL--FTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAA 126
Query: 113 DVAKEYGLYGAAFFTNSATVCNIFC-----RMHHGLLTLPVKLEDTPLSIPGLPSLNFID 167
D+A E G+ F+T + R G+ + + ++ IPG+ + F D
Sbjct: 127 DMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRD 186
Query: 168 LPTFVKFPESYPAYLAM--KLGQYSNLDKADWIFGNTFQELE 207
L + F + M ++GQ L KA +F N+F+EL+
Sbjct: 187 LQEGIVFGNLNSLFSRMLHRMGQV--LPKATAVFINSFEELD 226
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 28/222 (12%)
Query: 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT--------THYTAKSICAPHVGV 52
N HV +L +P H PLL K++A++ K T + T ++ + P++
Sbjct: 12 NLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKY 71
Query: 53 EPISDGFDEGGYAQAKNED----LYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFL 108
+ DG + GY + N L++K+ ++N + E + + + C+V D+F
Sbjct: 72 YNVHDGLPK-GYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKN---ITCLVTDAFF 127
Query: 109 PWALDVAKEYG-----LYGAAFFTNSATVCNIFCRMHHGLLTL-PVKLEDTPLSIPGLPS 162
+ D+A+E L+ A + V R G + VK D +PG P
Sbjct: 128 WFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDV---LPGFPE 184
Query: 163 LNFIDLPTFVKFPESYP-AYLAMKLGQYSNLDKADWIFGNTF 203
L DLP V P A + K+G L +A+ + N+F
Sbjct: 185 LKASDLPEGVIKDIDVPFATMLHKMGL--ELPRANAVAINSF 224
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 44/230 (19%)
Query: 4 HVVLLPYPSQGHINPLLQFAKRLA-----------------SKGVKATLATTHYTAKSIC 46
HV ++P P GH+ PL++FAKRL SK + L + + S+
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVF 67
Query: 47 APHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRY----KNSSFPVNCV 102
P V + +S + + E + +R+ EL K + + P V
Sbjct: 68 LPPVDLTDLS--------SSTRIESRISLTV----TRSNPELRKVFDSFVEGGRLPTALV 115
Query: 103 VYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLPVKLED--TPLSIPG- 159
V D F A DVA E+ + F+ +A V + F + T+ + + PL +PG
Sbjct: 116 V-DLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGC 174
Query: 160 --LPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELE 207
+ +F+D P + ++Y +L +Y +A+ I NTF ELE
Sbjct: 175 VPVAGKDFLD-PAQDRKDDAY-KWLLHNTKRYK---EAEGILVNTFFELE 219
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPI------- 55
RH+ P GH+NP L + L ++G + + A T A + A G P+
Sbjct: 13 RHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKA--AGATPVVYDSILP 70
Query: 56 SDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYD 105
+ E + + + + L F D R L +L Y + + +VYD
Sbjct: 71 KESNPEESWPEDQESAMGL--FLDEAVRVLPQLEDAYADDR--PDLIVYD 116
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPI 55
H+ + + GH+NP L+ + L ++G + T A A + A G P+
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAA--TGPRPV 58
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 12/114 (10%)
Query: 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFD 60
+RH++ GH+ P L LA +G + T TT A + A V FD
Sbjct: 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFD 62
Query: 61 EGGYAQ-AKNED----LYLKSFEDNGS--RTLSELIKRYKNSSFPVNCVVYDSF 107
+ K ED L+L +N + R E + P + VVYD F
Sbjct: 63 TFHVPEVVKQEDAETQLHLVYVRENVAILRAAEEAL-----GDNPPDLVVYDVF 111
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 123 AAFFTNSATVCNIFCRMHHGLLTLPVKLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYL 182
AAF T + H G L K+ D + G+ +L +D TF P S+P
Sbjct: 444 AAFETFCRESVASYWHYHGGCLV--GKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGF 501
Query: 183 AMKLGQY 189
+ LG+Y
Sbjct: 502 YLMLGRY 508
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 123 AAFFTNSATVCNIFCRMHHGLLTLPVKLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYL 182
AAF T + H G L K+ D + G+ +L +D TF P S+P
Sbjct: 444 AAFETFCRESVASYWHYHGGCLV--GKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGF 501
Query: 183 AMKLGQY 189
+ LG+Y
Sbjct: 502 YLMLGRY 508
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,924,789
Number of Sequences: 62578
Number of extensions: 285162
Number of successful extensions: 590
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 12
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)