Query 042896
Match_columns 216
No_of_seqs 230 out of 1538
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 10:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 2.6E-42 5.6E-47 301.1 23.3 213 2-215 7-234 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 5.8E-42 1.3E-46 296.8 22.5 207 2-215 5-214 (449)
3 PLN02152 indole-3-acetate beta 100.0 3.7E-40 7.9E-45 286.0 21.6 205 2-215 3-217 (455)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.7E-39 3.6E-44 284.0 20.6 210 2-215 9-235 (477)
5 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.9E-39 8.4E-44 279.9 22.6 210 2-215 7-224 (451)
6 PLN02562 UDP-glycosyltransfera 100.0 4E-39 8.6E-44 280.2 21.8 210 2-215 6-226 (448)
7 PLN02992 coniferyl-alcohol glu 100.0 2E-38 4.4E-43 276.3 20.5 206 1-215 4-221 (481)
8 PLN00164 glucosyltransferase; 100.0 5.8E-38 1.3E-42 274.8 22.0 207 1-215 2-227 (480)
9 PLN03004 UDP-glycosyltransfera 100.0 5.2E-38 1.1E-42 272.3 21.4 211 2-215 3-229 (451)
10 PLN02670 transferase, transfer 100.0 2.1E-38 4.6E-43 275.9 18.5 206 2-215 6-234 (472)
11 PLN02534 UDP-glycosyltransfera 100.0 1.5E-37 3.2E-42 271.7 20.8 206 2-215 8-236 (491)
12 PLN03015 UDP-glucosyl transfer 100.0 3.7E-37 8.1E-42 267.2 21.1 208 2-215 3-225 (470)
13 PLN02210 UDP-glucosyl transfer 100.0 5.4E-37 1.2E-41 267.2 21.7 205 2-215 8-220 (456)
14 PLN02554 UDP-glycosyltransfera 100.0 9E-37 1.9E-41 267.8 21.7 205 1-215 1-231 (481)
15 PLN02207 UDP-glycosyltransfera 100.0 1.6E-36 3.4E-41 263.9 21.9 211 1-215 2-232 (468)
16 PLN02448 UDP-glycosyltransfera 100.0 4.6E-36 9.9E-41 262.2 21.4 208 2-215 10-229 (459)
17 PLN02167 UDP-glycosyltransfera 100.0 6.7E-36 1.5E-40 262.0 21.6 211 1-215 2-236 (475)
18 PLN02764 glycosyltransferase f 100.0 1.3E-35 2.7E-40 256.9 19.2 197 2-215 5-220 (453)
19 PLN02208 glycosyltransferase f 100.0 7.4E-35 1.6E-39 252.6 20.2 193 2-215 4-214 (442)
20 PLN00414 glycosyltransferase f 100.0 8.8E-35 1.9E-39 252.4 18.7 194 2-215 4-213 (446)
21 PLN03007 UDP-glucosyltransfera 100.0 4.1E-33 8.9E-38 244.9 21.9 207 2-215 5-238 (482)
22 cd03784 GT1_Gtf_like This fami 99.6 4.5E-16 9.7E-21 134.1 8.7 126 3-130 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 3.8E-15 8.2E-20 128.2 10.3 119 8-128 1-122 (392)
24 KOG1192 UDP-glucuronosyl and U 99.5 3.4E-15 7.4E-20 132.0 -0.3 137 2-139 5-156 (496)
25 PF03033 Glyco_transf_28: Glyc 99.3 3.7E-12 7.9E-17 93.9 5.2 122 5-129 1-131 (139)
26 PHA03392 egt ecdysteroid UDP-g 98.9 3.9E-08 8.4E-13 87.5 12.6 124 3-129 21-168 (507)
27 PF00201 UDPGT: UDP-glucoronos 98.8 5.4E-10 1.2E-14 99.1 -0.3 122 4-128 2-149 (500)
28 COG1819 Glycosyl transferases, 98.4 3.8E-07 8.1E-12 79.1 5.3 56 2-57 1-56 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.4 6E-06 1.3E-10 68.9 11.9 120 4-130 2-125 (318)
30 TIGR00661 MJ1255 conserved hyp 98.3 6.2E-06 1.3E-10 69.3 10.6 117 8-129 6-123 (321)
31 PRK12446 undecaprenyldiphospho 97.8 0.00052 1.1E-08 58.5 11.9 118 4-131 3-126 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.5 0.003 6.4E-08 54.0 12.8 120 4-131 2-126 (357)
33 cd03785 GT1_MurG MurG is an N- 97.2 0.0062 1.3E-07 51.2 11.8 112 4-125 1-118 (350)
34 TIGR01133 murG undecaprenyldip 97.0 0.015 3.2E-07 48.9 12.1 112 4-125 2-119 (348)
35 PRK00726 murG undecaprenyldiph 96.9 0.019 4.1E-07 48.7 12.1 113 3-125 2-120 (357)
36 cd03818 GT1_ExpC_like This fam 96.7 0.059 1.3E-06 46.4 13.5 104 18-126 12-116 (396)
37 TIGR00215 lpxB lipid-A-disacch 96.4 0.038 8.3E-07 47.7 10.1 37 3-40 6-42 (385)
38 TIGR03590 PseG pseudaminic aci 96.0 0.065 1.4E-06 44.2 9.2 47 11-57 12-61 (279)
39 cd03823 GT1_ExpE7_like This fa 95.4 0.33 7.2E-06 40.0 11.4 30 13-42 15-44 (359)
40 cd03816 GT1_ALG1_like This fam 95.3 0.52 1.1E-05 41.0 12.9 55 2-56 3-60 (415)
41 cd03800 GT1_Sucrose_synthase T 95.0 0.26 5.6E-06 41.8 9.8 103 14-125 22-130 (398)
42 PRK00025 lpxB lipid-A-disaccha 94.9 0.17 3.7E-06 43.2 8.5 36 3-39 2-37 (380)
43 TIGR02468 sucrsPsyn_pln sucros 94.7 0.47 1E-05 46.0 11.4 111 14-125 196-339 (1050)
44 COG4671 Predicted glycosyl tra 94.5 0.29 6.3E-06 41.5 8.5 55 3-57 10-69 (400)
45 TIGR02470 sucr_synth sucrose s 94.5 1.3 2.8E-05 41.9 13.6 115 3-124 256-413 (784)
46 PLN00142 sucrose synthase 94.4 0.56 1.2E-05 44.3 11.0 107 14-126 304-438 (815)
47 PRK10307 putative glycosyl tra 94.3 0.95 2.1E-05 39.1 11.7 22 19-40 21-42 (412)
48 cd04962 GT1_like_5 This family 94.0 0.8 1.7E-05 38.5 10.6 37 4-40 2-39 (371)
49 cd03794 GT1_wbuB_like This fam 94.0 1.2 2.6E-05 36.9 11.5 29 13-41 14-42 (394)
50 PF12000 Glyco_trans_4_3: Gkyc 93.9 1.2 2.5E-05 34.1 10.1 93 28-126 1-95 (171)
51 PF13477 Glyco_trans_4_2: Glyc 93.3 1.4 3.1E-05 31.6 9.6 49 5-56 2-51 (139)
52 TIGR03449 mycothiol_MshA UDP-N 93.0 1.5 3.3E-05 37.6 10.7 107 13-127 20-132 (405)
53 cd03808 GT1_cap1E_like This fa 92.5 3.1 6.8E-05 33.9 11.7 53 4-56 1-54 (359)
54 cd02067 B12-binding B12 bindin 91.2 3.5 7.6E-05 29.0 9.2 36 4-39 1-36 (119)
55 PF13579 Glyco_trans_4_4: Glyc 91.0 0.39 8.4E-06 34.8 4.2 94 18-126 6-103 (160)
56 PF04007 DUF354: Protein of un 90.3 3.7 8E-05 34.9 9.9 102 14-131 11-115 (335)
57 cd03805 GT1_ALG2_like This fam 89.7 8.1 0.00018 32.7 11.8 23 17-39 17-39 (392)
58 TIGR02472 sucr_P_syn_N sucrose 88.2 3.6 7.7E-05 36.0 8.7 101 17-126 30-144 (439)
59 cd02070 corrinoid_protein_B12- 87.6 8.7 0.00019 29.9 9.7 38 2-39 82-119 (201)
60 cd03814 GT1_like_2 This family 87.1 1.1 2.4E-05 37.0 4.7 29 13-41 14-42 (364)
61 TIGR02370 pyl_corrinoid methyl 86.5 9.1 0.0002 29.8 9.2 41 2-42 84-124 (197)
62 cd03796 GT1_PIG-A_like This fa 86.0 14 0.0003 31.7 11.0 43 14-56 15-60 (398)
63 PF13439 Glyco_transf_4: Glyco 85.9 0.99 2.1E-05 33.2 3.4 29 14-42 13-41 (177)
64 cd03819 GT1_WavL_like This fam 84.3 10 0.00022 31.3 9.3 96 14-127 11-109 (355)
65 COG3980 spsG Spore coat polysa 84.0 1.2 2.6E-05 36.8 3.2 39 4-42 2-44 (318)
66 PRK13609 diacylglycerol glucos 83.8 1.7 3.8E-05 37.0 4.4 38 2-39 4-42 (380)
67 PLN02275 transferase, transfer 83.5 27 0.00058 29.7 13.5 53 4-56 6-62 (371)
68 cd03817 GT1_UGDG_like This fam 83.4 2.1 4.5E-05 35.3 4.7 31 11-41 12-42 (374)
69 smart00851 MGS MGS-like domain 82.9 6.8 0.00015 26.1 6.2 32 19-52 2-33 (90)
70 cd04951 GT1_WbdM_like This fam 80.2 2.3 4.9E-05 35.3 3.8 28 13-40 12-39 (360)
71 PRK02261 methylaspartate mutas 80.0 21 0.00045 26.1 11.7 41 2-42 3-43 (137)
72 PLN02871 UDP-sulfoquinovose:DA 79.5 3.8 8.2E-05 36.2 5.1 40 2-41 58-102 (465)
73 TIGR00715 precor6x_red precorr 78.6 17 0.00037 29.6 8.3 23 19-41 12-34 (256)
74 COG0496 SurE Predicted acid ph 78.5 27 0.00058 28.5 9.1 26 19-45 16-41 (252)
75 cd04955 GT1_like_6 This family 78.5 5.7 0.00012 33.0 5.7 43 14-56 16-60 (363)
76 cd01424 MGS_CPS_II Methylglyox 78.0 16 0.00035 25.3 7.0 84 14-124 10-100 (110)
77 PRK05749 3-deoxy-D-manno-octul 77.1 8.3 0.00018 33.4 6.5 94 6-126 53-154 (425)
78 cd03821 GT1_Bme6_like This fam 76.9 4.4 9.5E-05 33.3 4.5 31 12-42 13-43 (375)
79 cd02069 methionine_synthase_B1 76.7 19 0.00041 28.5 7.8 40 2-41 88-127 (213)
80 cd03812 GT1_CapH_like This fam 76.0 26 0.00055 29.0 9.0 31 12-42 11-41 (358)
81 COG1703 ArgK Putative periplas 73.5 48 0.001 27.9 9.5 41 4-44 53-93 (323)
82 PF09314 DUF1972: Domain of un 72.6 7.1 0.00015 30.2 4.3 40 17-56 21-62 (185)
83 TIGR03600 phage_DnaB phage rep 72.4 26 0.00056 30.6 8.4 39 5-43 197-236 (421)
84 cd03825 GT1_wcfI_like This fam 71.4 7.4 0.00016 32.3 4.6 38 4-41 2-41 (365)
85 PF02310 B12-binding: B12 bind 70.6 11 0.00024 26.3 4.7 36 4-39 2-37 (121)
86 cd03795 GT1_like_4 This family 70.5 7.9 0.00017 32.0 4.6 31 12-42 13-43 (357)
87 cd03802 GT1_AviGT4_like This f 69.9 9.6 0.00021 31.2 4.9 28 14-41 20-47 (335)
88 cd01635 Glycosyltransferase_GT 69.7 7.8 0.00017 29.4 4.1 26 12-37 12-37 (229)
89 PRK13934 stationary phase surv 69.5 62 0.0013 26.6 9.7 25 19-44 16-40 (266)
90 PRK00654 glgA glycogen synthas 68.7 8.5 0.00018 34.0 4.6 26 14-39 18-43 (466)
91 cd01423 MGS_CPS_I_III Methylgl 68.4 25 0.00055 24.5 6.2 84 17-123 13-105 (116)
92 PRK13932 stationary phase surv 68.3 65 0.0014 26.3 9.7 40 2-44 5-45 (257)
93 TIGR00087 surE 5'/3'-nucleotid 68.1 63 0.0014 26.1 9.9 26 19-45 16-41 (244)
94 cd03806 GT1_ALG11_like This fa 67.8 69 0.0015 27.9 10.0 101 17-127 18-137 (419)
95 PRK13931 stationary phase surv 67.6 68 0.0015 26.3 9.6 27 19-45 16-45 (261)
96 PRK08506 replicative DNA helic 67.6 32 0.00069 30.7 7.9 39 5-43 195-233 (472)
97 PF07894 DUF1669: Protein of u 66.8 10 0.00022 31.4 4.2 47 83-129 133-184 (284)
98 PF04244 DPRP: Deoxyribodipyri 66.3 6 0.00013 31.6 2.8 26 15-40 47-72 (224)
99 PF02441 Flavoprotein: Flavopr 65.9 12 0.00027 26.7 4.2 40 4-44 2-41 (129)
100 cd03801 GT1_YqgM_like This fam 64.7 13 0.00028 30.1 4.7 30 13-42 14-43 (374)
101 cd03811 GT1_WabH_like This fam 64.5 13 0.00028 30.0 4.7 31 12-42 11-41 (353)
102 cd03820 GT1_amsD_like This fam 64.1 14 0.0003 29.9 4.7 30 13-42 13-42 (348)
103 PRK00346 surE 5'(3')-nucleotid 62.8 83 0.0018 25.6 9.2 25 19-44 16-40 (250)
104 PLN02846 digalactosyldiacylgly 62.7 13 0.00028 33.1 4.5 39 2-40 4-47 (462)
105 cd03791 GT1_Glycogen_synthase_ 61.4 7.3 0.00016 34.3 2.8 23 17-39 20-42 (476)
106 TIGR03492 conserved hypothetic 61.2 57 0.0012 28.3 8.2 99 17-125 11-119 (396)
107 PF08323 Glyco_transf_5: Starc 61.0 8 0.00017 31.1 2.7 23 17-39 20-42 (245)
108 PRK10867 signal recognition pa 60.6 52 0.0011 29.1 7.8 40 4-43 102-142 (433)
109 COG2185 Sbm Methylmalonyl-CoA 60.3 17 0.00037 26.9 4.0 38 1-38 11-48 (143)
110 PRK13933 stationary phase surv 60.2 93 0.002 25.4 10.0 25 19-44 16-40 (253)
111 COG1484 DnaC DNA replication p 60.1 12 0.00027 30.3 3.7 43 3-45 106-148 (254)
112 COG0299 PurN Folate-dependent 59.9 26 0.00056 27.4 5.1 46 84-129 13-60 (200)
113 PF04127 DFP: DNA / pantothena 57.8 12 0.00026 28.9 3.0 21 20-40 33-53 (185)
114 PRK13935 stationary phase surv 57.5 1E+02 0.0023 25.1 9.6 25 19-44 16-40 (253)
115 PF12146 Hydrolase_4: Putative 57.3 29 0.00063 22.6 4.5 33 4-36 17-49 (79)
116 cd02071 MM_CoA_mut_B12_BD meth 56.6 68 0.0015 22.6 10.9 38 4-41 1-38 (122)
117 PF06506 PrpR_N: Propionate ca 56.4 21 0.00045 27.1 4.2 45 82-131 111-155 (176)
118 COG0162 TyrS Tyrosyl-tRNA synt 54.5 14 0.00031 32.2 3.3 26 14-40 49-74 (401)
119 PRK08305 spoVFB dipicolinate s 54.4 17 0.00037 28.4 3.4 38 4-42 7-45 (196)
120 PRK11519 tyrosine kinase; Prov 54.0 1.5E+02 0.0033 28.0 10.3 38 3-40 526-565 (719)
121 cd03786 GT1_UDP-GlcNAc_2-Epime 53.8 46 0.00099 27.8 6.3 30 12-41 8-38 (363)
122 PF00070 Pyr_redox: Pyridine n 53.6 22 0.00047 22.9 3.4 24 18-41 10-33 (80)
123 TIGR02095 glgA glycogen/starch 52.1 15 0.00032 32.5 3.1 25 16-40 20-44 (473)
124 cd03799 GT1_amsK_like This is 51.2 34 0.00074 28.1 5.1 27 15-41 13-39 (355)
125 PF01975 SurE: Survival protei 51.1 18 0.0004 28.2 3.1 27 19-45 16-42 (196)
126 cd03798 GT1_wlbH_like This fam 50.8 26 0.00056 28.5 4.2 31 12-42 13-43 (377)
127 cd03807 GT1_WbnK_like This fam 49.8 35 0.00075 27.7 4.9 45 12-56 11-58 (365)
128 COG1797 CobB Cobyrinic acid a, 48.6 79 0.0017 28.0 6.8 27 8-34 7-33 (451)
129 cd01425 RPS2 Ribosomal protein 48.4 93 0.002 24.1 6.7 31 98-128 127-159 (193)
130 cd00861 ProRS_anticodon_short 48.1 41 0.00089 22.1 4.2 35 3-37 2-38 (94)
131 COG1618 Predicted nucleotide k 47.8 1.3E+02 0.0027 23.1 7.3 55 2-56 5-59 (179)
132 COG4081 Uncharacterized protei 47.7 36 0.00078 24.7 3.9 39 5-43 6-45 (148)
133 COG1435 Tdk Thymidine kinase [ 47.4 1.4E+02 0.003 23.5 9.3 35 8-42 10-44 (201)
134 TIGR02853 spore_dpaA dipicolin 46.7 1.2E+02 0.0026 25.1 7.5 20 20-39 14-33 (287)
135 KOG1615 Phosphoserine phosphat 46.2 29 0.00063 27.2 3.5 39 83-122 91-129 (227)
136 PF13450 NAD_binding_8: NAD(P) 46.2 28 0.0006 21.9 2.9 20 20-39 9-28 (68)
137 PRK08993 2-deoxy-D-gluconate 3 45.4 71 0.0015 25.3 5.9 20 19-38 23-42 (253)
138 PRK09444 pntB pyridine nucleot 44.0 41 0.00089 29.8 4.4 36 3-40 307-347 (462)
139 cd01018 ZntC Metal binding pro 43.6 90 0.002 25.3 6.3 46 84-131 205-252 (266)
140 PLN02891 IMP cyclohydrolase 43.0 63 0.0014 29.3 5.5 42 18-61 34-77 (547)
141 TIGR00234 tyrS tyrosyl-tRNA sy 42.9 24 0.00053 30.5 2.9 25 14-39 47-71 (377)
142 TIGR02193 heptsyl_trn_I lipopo 42.4 47 0.001 27.5 4.6 53 4-56 1-57 (319)
143 PRK09620 hypothetical protein; 42.2 27 0.00058 27.9 2.9 20 20-39 33-52 (229)
144 cd03822 GT1_ecORF704_like This 41.9 44 0.00096 27.3 4.3 28 14-41 14-41 (366)
145 PF08026 Antimicrobial_5: Bee 41.6 3.8 8.2E-05 22.3 -1.4 22 9-30 17-38 (39)
146 PRK14089 ipid-A-disaccharide s 41.5 51 0.0011 28.2 4.6 32 98-129 76-112 (347)
147 TIGR02852 spore_dpaB dipicolin 41.2 41 0.0009 26.0 3.7 39 4-42 2-40 (187)
148 PRK06935 2-deoxy-D-gluconate 3 40.4 89 0.0019 24.7 5.8 32 5-39 17-48 (258)
149 PF08897 DUF1841: Domain of un 40.2 21 0.00045 26.2 1.8 18 11-28 57-74 (137)
150 PRK06732 phosphopantothenate-- 40.1 31 0.00068 27.5 3.0 20 20-39 30-49 (229)
151 PF02951 GSH-S_N: Prokaryotic 40.0 76 0.0017 22.6 4.7 25 17-41 18-42 (119)
152 TIGR00679 hpr-ser Hpr(Ser) kin 39.6 1.8E+02 0.0039 24.5 7.4 48 83-131 69-118 (304)
153 PTZ00445 p36-lilke protein; Pr 39.0 36 0.00079 27.0 3.1 28 14-41 74-102 (219)
154 PRK00945 acetyl-CoA decarbonyl 38.8 80 0.0017 24.1 4.9 29 98-127 36-71 (171)
155 TIGR00355 purH phosphoribosyla 38.7 90 0.0019 28.2 5.8 37 18-56 12-48 (511)
156 PF03808 Glyco_tran_WecB: Glyc 38.6 1.7E+02 0.0037 22.0 8.3 87 19-128 37-134 (172)
157 PRK07773 replicative DNA helic 38.4 2.2E+02 0.0048 27.7 8.9 40 5-44 220-260 (886)
158 PF06925 MGDG_synth: Monogalac 38.1 88 0.0019 23.3 5.1 41 83-128 79-125 (169)
159 cd00860 ThrRS_anticodon ThrRS 38.1 76 0.0016 20.4 4.3 34 3-37 2-35 (91)
160 cd05844 GT1_like_7 Glycosyltra 37.9 2E+02 0.0044 23.7 7.8 28 98-125 82-111 (367)
161 PRK07313 phosphopantothenoylcy 37.9 50 0.0011 25.3 3.7 41 4-45 3-43 (182)
162 PF02233 PNTB: NAD(P) transhyd 37.8 47 0.001 29.6 3.9 36 3-40 308-348 (463)
163 PRK12481 2-deoxy-D-gluconate 3 37.8 94 0.002 24.6 5.5 20 19-38 21-40 (251)
164 PRK01021 lpxB lipid-A-disaccha 37.6 1.3E+02 0.0029 27.8 6.8 44 84-129 298-346 (608)
165 COG4088 Predicted nucleotide k 37.6 44 0.00094 26.8 3.3 35 4-38 3-37 (261)
166 PF01591 6PF2K: 6-phosphofruct 37.4 2.1E+02 0.0046 22.8 9.4 107 3-124 13-127 (222)
167 cd02034 CooC The accessory pro 37.3 94 0.002 21.8 4.8 37 4-40 1-37 (116)
168 PRK04940 hypothetical protein; 37.2 85 0.0018 24.2 4.8 32 100-131 62-94 (180)
169 PRK08226 short chain dehydroge 37.1 99 0.0021 24.5 5.5 20 20-39 20-39 (263)
170 COG1255 Uncharacterized protei 37.0 40 0.00088 24.1 2.7 33 18-53 24-56 (129)
171 PF01380 SIS: SIS domain SIS d 37.0 76 0.0016 22.0 4.4 33 10-42 60-92 (131)
172 COG2910 Putative NADH-flavin r 36.6 36 0.00079 26.6 2.7 34 4-41 2-35 (211)
173 TIGR03087 stp1 sugar transfera 36.5 31 0.00067 29.5 2.7 32 8-40 8-40 (397)
174 PF02603 Hpr_kinase_N: HPr Ser 36.0 37 0.00079 24.4 2.5 43 84-127 69-113 (127)
175 TIGR02113 coaC_strep phosphopa 35.9 43 0.00094 25.6 3.1 35 11-45 8-42 (177)
176 TIGR00745 apbA_panE 2-dehydrop 35.8 25 0.00054 28.6 1.9 20 21-40 5-24 (293)
177 PRK08220 2,3-dihydroxybenzoate 35.8 1.8E+02 0.0038 22.7 6.8 21 19-39 21-41 (252)
178 PF03853 YjeF_N: YjeF-related 35.7 47 0.001 25.0 3.2 35 2-38 25-60 (169)
179 COG2085 Predicted dinucleotide 35.4 36 0.00077 27.0 2.5 29 12-42 8-36 (211)
180 TIGR01285 nifN nitrogenase mol 35.4 3E+02 0.0064 24.3 8.6 77 17-125 321-397 (432)
181 PF03720 UDPG_MGDP_dh_C: UDP-g 35.4 51 0.0011 22.6 3.1 23 17-39 17-39 (106)
182 COG0541 Ffh Signal recognition 35.1 2.5E+02 0.0054 25.0 7.8 40 4-43 102-141 (451)
183 cd02065 B12-binding_like B12 b 35.0 80 0.0017 21.8 4.2 34 5-38 2-35 (125)
184 COG0467 RAD55 RecA-superfamily 34.7 82 0.0018 25.3 4.7 42 3-44 24-65 (260)
185 PF08660 Alg14: Oligosaccharid 34.4 2E+02 0.0044 21.7 8.7 29 11-39 6-35 (170)
186 PRK13011 formyltetrahydrofolat 34.4 87 0.0019 26.0 4.8 42 83-126 101-144 (286)
187 PRK05920 aromatic acid decarbo 34.2 53 0.0012 25.8 3.4 40 3-43 4-43 (204)
188 TIGR00639 PurN phosphoribosylg 34.0 1.2E+02 0.0026 23.4 5.3 44 84-127 13-58 (190)
189 PF02142 MGS: MGS-like domain 33.6 41 0.00089 22.6 2.4 35 19-55 2-36 (95)
190 PF02558 ApbA: Ketopantoate re 33.0 46 0.001 24.0 2.8 20 21-40 12-31 (151)
191 PF00448 SRP54: SRP54-type pro 32.9 1E+02 0.0022 23.9 4.8 39 4-42 3-41 (196)
192 PF01316 Arg_repressor: Argini 32.9 28 0.00061 22.3 1.3 21 19-39 22-42 (70)
193 COG0300 DltE Short-chain dehyd 32.7 48 0.001 27.3 3.0 19 20-38 20-38 (265)
194 PRK13604 luxD acyl transferase 32.6 1.1E+02 0.0024 25.8 5.1 32 5-36 39-70 (307)
195 TIGR00421 ubiX_pad polyprenyl 32.4 56 0.0012 25.1 3.2 27 19-45 15-41 (181)
196 COG0052 RpsB Ribosomal protein 32.3 77 0.0017 25.8 4.0 30 99-128 157-188 (252)
197 PLN02331 phosphoribosylglycina 32.3 1.4E+02 0.003 23.5 5.4 44 84-127 12-57 (207)
198 PRK07985 oxidoreductase; Provi 32.0 1.7E+02 0.0036 24.0 6.2 18 20-37 63-80 (294)
199 TIGR00064 ftsY signal recognit 31.6 1.1E+02 0.0024 25.0 5.0 38 4-41 74-111 (272)
200 PRK08057 cobalt-precorrin-6x r 31.6 2.8E+02 0.0061 22.4 9.4 33 3-40 3-35 (248)
201 PF02571 CbiJ: Precorrin-6x re 31.5 2.8E+02 0.0061 22.4 8.1 19 20-39 13-31 (249)
202 cd03115 SRP The signal recogni 31.4 1.2E+02 0.0026 22.4 4.9 38 5-42 3-40 (173)
203 KOG4589 Cell division protein 31.4 47 0.001 26.0 2.5 22 86-109 126-147 (232)
204 PRK00771 signal recognition pa 31.4 1.1E+02 0.0025 27.0 5.3 39 4-42 97-135 (437)
205 PRK06128 oxidoreductase; Provi 31.2 1.7E+02 0.0037 23.9 6.1 18 20-37 69-86 (300)
206 PRK13982 bifunctional SbtC-lik 31.1 49 0.0011 29.7 3.0 38 4-41 258-307 (475)
207 PF01210 NAD_Gly3P_dh_N: NAD-d 31.1 46 0.00099 24.6 2.5 21 20-40 12-32 (157)
208 TIGR00640 acid_CoA_mut_C methy 30.4 91 0.002 22.5 3.9 37 2-38 53-90 (132)
209 PF02780 Transketolase_C: Tran 30.3 1.1E+02 0.0024 21.4 4.3 36 3-40 10-45 (124)
210 TIGR02329 propionate_PrpR prop 30.2 1.4E+02 0.0031 27.1 5.8 41 83-128 132-172 (526)
211 PF01555 N6_N4_Mtase: DNA meth 30.2 44 0.00095 25.7 2.4 41 84-128 180-222 (231)
212 PF07015 VirC1: VirC1 protein; 30.2 89 0.0019 25.1 4.0 33 12-44 12-44 (231)
213 PF13460 NAD_binding_10: NADH( 30.1 56 0.0012 24.2 2.9 34 20-54 12-45 (183)
214 TIGR02699 archaeo_AfpA archaeo 30.0 71 0.0015 24.4 3.3 33 11-43 7-41 (174)
215 COG0569 TrkA K+ transport syst 29.9 50 0.0011 26.2 2.6 21 20-40 13-33 (225)
216 TIGR02700 flavo_MJ0208 archaeo 29.7 75 0.0016 25.4 3.6 37 8-44 4-43 (234)
217 cd00395 Tyr_Trp_RS_core cataly 29.7 53 0.0012 27.0 2.8 24 14-38 16-39 (273)
218 cd01981 Pchlide_reductase_B Pc 29.5 91 0.002 27.3 4.4 25 98-125 370-394 (430)
219 cd01983 Fer4_NifH The Fer4_Nif 29.4 1.5E+02 0.0032 18.7 4.6 33 5-37 2-34 (99)
220 cd01452 VWA_26S_proteasome_sub 29.3 1.5E+02 0.0032 23.0 5.0 33 5-37 111-143 (187)
221 cd02067 B12-binding B12 bindin 29.2 1.2E+02 0.0026 21.0 4.3 35 3-37 51-86 (119)
222 PLN02316 synthase/transferase 29.1 56 0.0012 32.3 3.2 38 3-40 588-631 (1036)
223 PRK14106 murD UDP-N-acetylmura 29.0 92 0.002 27.2 4.4 32 3-39 6-37 (450)
224 PRK04148 hypothetical protein; 28.8 61 0.0013 23.7 2.7 31 4-40 19-49 (134)
225 PF09001 DUF1890: Domain of un 28.8 97 0.0021 22.8 3.7 28 18-45 15-42 (139)
226 PF05728 UPF0227: Uncharacteri 28.7 1.5E+02 0.0033 22.8 5.1 45 84-131 48-93 (187)
227 KOG2941 Beta-1,4-mannosyltrans 28.6 1.6E+02 0.0036 25.5 5.5 56 2-57 12-70 (444)
228 PRK01175 phosphoribosylformylg 28.2 3.3E+02 0.0072 22.2 9.0 56 1-59 2-58 (261)
229 TIGR01990 bPGM beta-phosphoglu 28.1 2.5E+02 0.0054 20.7 6.6 23 19-41 92-114 (185)
230 TIGR02114 coaB_strep phosphopa 28.1 61 0.0013 25.8 2.8 18 20-37 29-46 (227)
231 COG2861 Uncharacterized protei 28.0 3.3E+02 0.0072 22.1 7.5 39 82-124 137-178 (250)
232 PF00391 PEP-utilizers: PEP-ut 27.7 43 0.00092 21.8 1.6 29 98-126 30-60 (80)
233 PF12695 Abhydrolase_5: Alpha/ 27.5 1.7E+02 0.0037 20.3 5.0 25 12-36 8-32 (145)
234 cd01421 IMPCH Inosine monophos 27.5 56 0.0012 25.4 2.4 37 18-56 12-48 (187)
235 PF00289 CPSase_L_chain: Carba 27.4 49 0.0011 23.1 1.9 29 9-39 78-106 (110)
236 cd00805 TyrRS_core catalytic c 27.3 73 0.0016 26.1 3.3 26 14-40 17-42 (269)
237 TIGR01675 plant-AP plant acid 27.2 75 0.0016 25.5 3.2 25 17-41 123-147 (229)
238 cd05014 SIS_Kpsf KpsF-like pro 27.0 1.5E+02 0.0033 20.5 4.6 33 11-43 55-87 (128)
239 PRK13354 tyrosyl-tRNA syntheta 27.0 76 0.0016 27.8 3.4 26 14-40 50-75 (410)
240 cd03789 GT1_LPS_heptosyltransf 26.9 84 0.0018 25.4 3.6 47 4-50 1-50 (279)
241 PRK07206 hypothetical protein; 26.7 4E+02 0.0087 22.9 7.9 35 2-41 2-36 (416)
242 PRK14098 glycogen synthase; Pr 26.5 66 0.0014 28.8 3.1 25 15-39 24-48 (489)
243 cd03809 GT1_mtfB_like This fam 26.5 65 0.0014 26.3 2.9 28 14-41 16-43 (365)
244 PRK10422 lipopolysaccharide co 26.4 1E+02 0.0022 26.0 4.1 50 2-51 5-57 (352)
245 PLN02828 formyltetrahydrofolat 26.3 1.7E+02 0.0036 24.1 5.1 45 83-127 82-131 (268)
246 KOG1014 17 beta-hydroxysteroid 26.3 66 0.0014 27.1 2.8 18 21-38 64-81 (312)
247 TIGR01425 SRP54_euk signal rec 26.3 1.4E+02 0.003 26.4 4.9 39 4-42 102-140 (429)
248 PRK06849 hypothetical protein; 26.2 1.5E+02 0.0032 25.5 5.1 35 2-40 4-38 (389)
249 PF00205 TPP_enzyme_M: Thiamin 26.1 62 0.0013 23.1 2.4 40 87-128 3-48 (137)
250 TIGR01490 HAD-SF-IB-hyp1 HAD-s 26.1 1.7E+02 0.0037 22.1 5.0 41 82-123 89-129 (202)
251 PF01738 DLH: Dienelactone hyd 25.9 1.6E+02 0.0035 22.6 4.9 31 5-36 17-47 (218)
252 PF10657 RC-P840_PscD: Photosy 25.7 1E+02 0.0023 22.1 3.3 41 2-42 46-86 (144)
253 PF04413 Glycos_transf_N: 3-De 25.7 1.6E+02 0.0035 22.6 4.7 96 5-127 23-126 (186)
254 PF07355 GRDB: Glycine/sarcosi 25.6 1.9E+02 0.004 24.9 5.3 29 98-126 80-118 (349)
255 PRK10916 ADP-heptose:LPS hepto 25.6 97 0.0021 26.1 3.8 48 4-51 2-52 (348)
256 PRK06249 2-dehydropantoate 2-r 25.5 79 0.0017 26.3 3.2 34 2-40 5-38 (313)
257 KOG2585 Uncharacterized conser 25.4 1.3E+02 0.0028 26.7 4.4 37 2-39 266-302 (453)
258 PRK08229 2-dehydropantoate 2-r 25.4 76 0.0016 26.6 3.1 32 3-39 3-34 (341)
259 PF05724 TPMT: Thiopurine S-me 25.3 78 0.0017 25.0 3.0 27 5-37 40-66 (218)
260 KOG3062 RNA polymerase II elon 25.2 1.4E+02 0.0031 24.2 4.3 35 3-37 2-38 (281)
261 PF01695 IstB_IS21: IstB-like 25.1 1.4E+02 0.003 22.7 4.2 41 3-43 48-88 (178)
262 COG1817 Uncharacterized protei 25.0 4.4E+02 0.0095 22.5 10.5 102 13-129 10-114 (346)
263 COG1090 Predicted nucleoside-d 24.9 74 0.0016 26.5 2.8 22 20-41 12-33 (297)
264 TIGR00176 mobB molybdopterin-g 24.6 1.6E+02 0.0035 21.8 4.4 35 5-39 2-36 (155)
265 TIGR00236 wecB UDP-N-acetylglu 24.6 4.2E+02 0.0091 22.2 8.9 108 4-125 2-116 (365)
266 cd01017 AdcA Metal binding pro 24.5 1.8E+02 0.0039 23.7 5.1 29 98-126 220-250 (282)
267 PRK06719 precorrin-2 dehydroge 24.5 86 0.0019 23.3 2.9 21 19-39 25-45 (157)
268 PLN00016 RNA-binding protein; 24.4 71 0.0015 27.3 2.8 36 3-40 53-90 (378)
269 PRK09361 radB DNA repair and r 24.3 1.8E+02 0.0039 22.6 4.9 35 5-39 26-60 (225)
270 PLN03050 pyridoxine (pyridoxam 24.1 81 0.0018 25.5 2.9 34 3-38 61-95 (246)
271 TIGR02137 HSK-PSP phosphoserin 24.0 83 0.0018 24.5 2.9 40 82-123 70-109 (203)
272 PRK10964 ADP-heptose:LPS hepto 24.0 1.1E+02 0.0024 25.3 3.9 48 4-51 2-52 (322)
273 PRK14974 cell division protein 23.9 1.9E+02 0.004 24.7 5.1 38 4-41 142-179 (336)
274 CHL00076 chlB photochlorophyll 23.9 1.2E+02 0.0027 27.3 4.3 26 98-126 374-399 (513)
275 PRK05647 purN phosphoribosylgl 23.8 2.2E+02 0.0048 22.2 5.2 44 84-127 14-59 (200)
276 PRK06222 ferredoxin-NADP(+) re 23.7 98 0.0021 25.3 3.4 37 4-42 100-136 (281)
277 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.6 1.8E+02 0.0038 20.1 4.4 32 11-42 54-85 (126)
278 COG0560 SerB Phosphoserine pho 23.6 83 0.0018 24.7 2.8 42 83-125 80-121 (212)
279 cd00532 MGS-like MGS-like doma 23.6 76 0.0016 22.0 2.4 39 15-55 10-48 (112)
280 TIGR00288 conserved hypothetic 23.5 1.2E+02 0.0025 23.0 3.4 48 4-56 108-156 (160)
281 cd00550 ArsA_ATPase Oxyanion-t 23.4 1.5E+02 0.0033 23.8 4.4 37 5-41 3-39 (254)
282 PF13614 AAA_31: AAA domain; P 23.4 1.6E+02 0.0035 21.1 4.3 34 9-42 8-41 (157)
283 COG1519 KdtA 3-deoxy-D-manno-o 23.3 5.3E+02 0.011 22.8 8.2 96 5-127 51-154 (419)
284 PLN02605 monogalactosyldiacylg 23.2 2.6E+02 0.0057 23.7 6.1 33 6-38 3-38 (382)
285 COG3046 Uncharacterized protei 23.0 1E+02 0.0022 27.2 3.3 27 15-41 51-77 (505)
286 cd05017 SIS_PGI_PMI_1 The memb 23.0 2.3E+02 0.0049 19.6 4.8 49 10-58 50-99 (119)
287 PRK08939 primosomal protein Dn 22.9 1.5E+02 0.0033 24.7 4.4 38 4-41 158-195 (306)
288 PRK05986 cob(I)alamin adenolsy 22.8 2.5E+02 0.0054 21.9 5.2 96 3-108 23-125 (191)
289 COG3150 Predicted esterase [Ge 22.7 1.7E+02 0.0036 22.6 4.0 44 84-130 48-92 (191)
290 PRK14099 glycogen synthase; Pr 22.7 86 0.0019 28.0 3.0 38 2-39 3-46 (485)
291 TIGR03127 RuMP_HxlB 6-phospho 22.6 1.8E+02 0.0039 21.7 4.5 33 11-43 80-112 (179)
292 cd02069 methionine_synthase_B1 22.5 1.6E+02 0.0034 23.2 4.2 38 2-39 139-176 (213)
293 COG2894 MinD Septum formation 22.4 1.8E+02 0.0039 23.6 4.4 37 4-40 3-41 (272)
294 PF03767 Acid_phosphat_B: HAD 22.4 76 0.0017 25.3 2.4 25 18-42 119-143 (229)
295 cd00859 HisRS_anticodon HisRS 22.4 1.7E+02 0.0037 18.3 3.9 34 4-38 3-36 (91)
296 PF03446 NAD_binding_2: NAD bi 22.0 1E+02 0.0022 22.8 2.9 19 20-38 14-32 (163)
297 cd00561 CobA_CobO_BtuR ATP:cor 21.9 2.1E+02 0.0047 21.4 4.6 34 4-37 4-37 (159)
298 cd01141 TroA_d Periplasmic bin 21.9 1.6E+02 0.0036 21.9 4.2 29 98-126 69-99 (186)
299 PF03403 PAF-AH_p_II: Platelet 21.8 98 0.0021 26.8 3.1 36 4-39 101-136 (379)
300 PRK04280 arginine repressor; P 21.8 70 0.0015 23.7 2.0 20 20-39 22-41 (148)
301 PRK03359 putative electron tra 21.7 2.3E+02 0.005 23.1 5.1 31 98-128 112-148 (256)
302 PRK12311 rpsB 30S ribosomal pr 21.7 1.4E+02 0.0031 25.3 4.0 31 98-128 152-184 (326)
303 PRK12404 stage V sporulation p 21.6 2.7E+02 0.0059 23.7 5.5 32 99-130 76-110 (334)
304 PF01266 DAO: FAD dependent ox 21.5 92 0.002 25.6 2.9 20 20-39 12-31 (358)
305 PRK14619 NAD(P)H-dependent gly 21.5 1.1E+02 0.0023 25.5 3.2 33 2-39 4-36 (308)
306 COG2099 CobK Precorrin-6x redu 21.4 1.9E+02 0.0041 23.7 4.4 81 19-127 14-101 (257)
307 TIGR01680 Veg_Stor_Prot vegeta 21.3 1.1E+02 0.0025 25.2 3.2 27 15-41 146-172 (275)
308 PF01494 FAD_binding_3: FAD bi 21.2 96 0.0021 25.4 3.0 21 19-39 13-33 (356)
309 TIGR01278 DPOR_BchB light-inde 21.2 1.6E+02 0.0034 26.6 4.4 25 98-125 364-388 (511)
310 COG3433 Aryl carrier domain [S 21.0 54 0.0012 21.2 1.0 21 17-37 32-52 (74)
311 PRK06372 translation initiatio 21.0 91 0.002 25.4 2.6 20 20-39 124-143 (253)
312 PF01297 TroA: Periplasmic sol 20.9 2.1E+02 0.0045 22.9 4.7 43 84-128 187-231 (256)
313 PRK11889 flhF flagellar biosyn 20.8 2.4E+02 0.0051 25.1 5.1 40 3-42 242-281 (436)
314 TIGR00441 gmhA phosphoheptose 20.7 2.4E+02 0.0052 20.6 4.7 37 7-43 83-119 (154)
315 PRK02910 light-independent pro 20.7 1.7E+02 0.0037 26.5 4.5 25 98-125 362-386 (519)
316 TIGR03264 met_CoM_red_C methyl 20.6 1.4E+02 0.0031 23.0 3.4 33 5-37 36-69 (194)
317 PRK05428 HPr kinase/phosphoryl 20.6 5.2E+02 0.011 21.8 8.0 48 82-130 68-117 (308)
318 cd05013 SIS_RpiR RpiR-like pro 20.6 2.2E+02 0.0048 19.6 4.4 32 10-41 67-98 (139)
319 PF07302 AroM: AroM protein; 20.5 2.6E+02 0.0057 22.3 5.0 43 83-127 165-210 (221)
320 PRK08335 translation initiatio 20.5 99 0.0021 25.6 2.7 20 20-39 150-169 (275)
321 cd00806 TrpRS_core catalytic c 20.4 1.1E+02 0.0024 25.2 3.0 27 14-40 15-41 (280)
322 PRK07231 fabG 3-ketoacyl-(acyl 20.4 1.1E+02 0.0024 23.8 3.0 26 12-39 13-38 (251)
323 TIGR00315 cdhB CO dehydrogenas 20.4 2.7E+02 0.0059 21.0 4.9 29 98-127 29-63 (162)
324 TIGR01234 L-ribulokinase L-rib 20.1 6.5E+02 0.014 22.7 8.4 58 70-127 407-469 (536)
325 PRK05973 replicative DNA helic 20.0 1.8E+02 0.0039 23.4 4.1 40 5-44 67-106 (237)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.6e-42 Score=301.13 Aligned_cols=213 Identities=36% Similarity=0.638 Sum_probs=165.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--------------CCceEEeccCCCCCCCCccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA--------------PHVGVEPISDGFDEGGYAQA 67 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~--------------~~i~~~~~~~~~~~~~~~~~ 67 (216)
++||+++|||+|||+|||++|||+|+++|+.|||++|+.+..++.+ ..++|..+|+|+|+ +.+..
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~-~~~~~ 85 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAE-DDPRR 85 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCC-Ccccc
Confidence 5799999999999999999999999999999999999987654321 12667777888876 33333
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCC
Q 042896 68 KNEDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLP 147 (216)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 147 (216)
.+...++..+.+.+.+.++++++++..+.++++|||+|++++|+.++|+++|||+++||+++++++++++++..+..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~~ 165 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPFP 165 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCcc
Confidence 34444555555556788999988764333456999999999999999999999999999999999999988865433222
Q ss_pred CCC-CCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 148 VKL-EDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 148 ~~~-~~~~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
... .+.++.+||+|+++.+|||+++...+..+...+.+.+..++..+++|||+|||+|||++++++++
T Consensus 166 ~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 234 (480)
T PLN02555 166 TETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMS 234 (480)
T ss_pred cccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHh
Confidence 111 12346799999999999998775332334445667777778889999999999999999999885
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.8e-42 Score=296.75 Aligned_cols=207 Identities=42% Similarity=0.730 Sum_probs=163.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC---CCceEEeccCCCCCCCCcccCCHHHHHHHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA---PHVGVEPISDGFDEGGYAQAKNEDLYLKSFE 78 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (216)
++||+++|||+|||++||++|||+|+++|++|||++|+.+..++.. ++|+|+.+|+|+|+++.+...+...++..+.
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~~~ 84 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQNFK 84 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHHHH
Confidence 5699999999999999999999999999999999999987765532 4699999999888633333334555666666
Q ss_pred HhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCCCCCCCCceecC
Q 042896 79 DNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLPVKLEDTPLSIP 158 (216)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~vP 158 (216)
+.+.+.++++++++..+.+|++|||+|+|++|+.++|+++|||++.||+++++.++++++.... .+ +..+.+|
T Consensus 85 ~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~------~~-~~~~~~p 157 (449)
T PLN02173 85 TFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYIN------NG-SLTLPIK 157 (449)
T ss_pred HhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhc------cC-CccCCCC
Confidence 5677889999987643334569999999999999999999999999999999888776643211 01 1335689
Q ss_pred CCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 159 GLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 159 g~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
|+|+++.+|||+++.+.+..+...+.+.+..++..+++||++|||+|||++++++++
T Consensus 158 g~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 214 (449)
T PLN02173 158 DLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLS 214 (449)
T ss_pred CCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHH
Confidence 999999999998775433333344556677778889999999999999999999885
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.7e-40 Score=285.97 Aligned_cols=205 Identities=32% Similarity=0.527 Sum_probs=158.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHh-CCCeEEEEecccc-cccc-CC----CCceEEeccCCCCCCCCc-ccCCHHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLAS-KGVKATLATTHYT-AKSI-CA----PHVGVEPISDGFDEGGYA-QAKNEDLY 73 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~-~G~~Vt~it~~~~-~~~~-~~----~~i~~~~~~~~~~~~~~~-~~~~~~~~ 73 (216)
++||+++|||+|||+|||++|||+|++ +|++|||++|+.+ .++. .+ ++|+|+.+++|+|+ +.+ ...+....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~-g~~~~~~~~~~~ 81 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDD-GVISNTDDVQNR 81 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCC-ccccccccHHHH
Confidence 579999999999999999999999996 7999999999865 2221 11 36999999988876 332 23344445
Q ss_pred HHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCCCCCCCC
Q 042896 74 LKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLPVKLEDT 153 (216)
Q Consensus 74 ~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 153 (216)
+..+...+.+.++++++++....++++|||+|++++|+.++|+++|||++.||+++|+++++++++..+. +.
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~--------~~ 153 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN--------NS 153 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--------CC
Confidence 5555556778999999886433346799999999999999999999999999999999999988765321 13
Q ss_pred ceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccC--CCCEEEEcchhhhcHHHHHhhh
Q 042896 154 PLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLD--KADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 154 ~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.+.+||+|+++.+|||+++..........+.+.+..+... +++|||+|||+|||++++++++
T Consensus 154 ~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 154 VFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred eeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 4579999999999999977543223333445555555443 3679999999999999999985
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-39 Score=283.97 Aligned_cols=210 Identities=20% Similarity=0.269 Sum_probs=152.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEecc----CCCCCCCCcccCCHH-
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA-----PHVGVEPIS----DGFDEGGYAQAKNED- 71 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~-----~~i~~~~~~----~~~~~~~~~~~~~~~- 71 (216)
++||+++|||+|||+|||++|||+|+++|++|||++|+.+.+++.+ ++|+++.+| +++|+ |.+...+..
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPd-G~~~~~~~~~ 87 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPS-GVENVKDLPP 87 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCC-CCcChhhcch
Confidence 6899999999999999999999999999999999999998865542 357877654 24555 443322221
Q ss_pred HHHHHH---HHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCC-
Q 042896 72 LYLKSF---EDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLP- 147 (216)
Q Consensus 72 ~~~~~~---~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~- 147 (216)
.....+ ...+.+.+++++++. ..+++|||+|++++|+.++|+++|||+++|||++|+++++++++..+.....
T Consensus 88 ~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~ 164 (477)
T PLN02863 88 SGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKIN 164 (477)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhccccccc
Confidence 111112 222345666666543 2357999999999999999999999999999999999999988764321110
Q ss_pred CCCCCCce---ecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 148 VKLEDTPL---SIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 148 ~~~~~~~~---~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
..+.++.+ .+||+|+++.+|||.+++.........+.+.+..+..+.++||++|||+|||++++++++
T Consensus 165 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 235 (477)
T PLN02863 165 PDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLK 235 (477)
T ss_pred ccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHH
Confidence 11111222 479999999999998765322222334455555556678899999999999999999985
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.9e-39 Score=279.93 Aligned_cols=210 Identities=24% Similarity=0.316 Sum_probs=156.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC--CCceEEeccCCCCCCCCcccCCHHHHHHHHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA--PHVGVEPISDGFDEGGYAQAKNEDLYLKSFED 79 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (216)
++||+++|||+|||+|||++|||+|++||++|||++|+.+..+... .+|++..+|+|+|+++.+.. ....++..+..
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~-~~~~~~~~~~~ 85 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNL-GPIEFLHKLNK 85 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCccccccc-CHHHHHHHHHH
Confidence 5699999999999999999999999999999999999988632211 46999999998886322222 23345555555
Q ss_pred hhhHHHHHHHHHhhc-CCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhc----CC-CcCCCCCCCC
Q 042896 80 NGSRTLSELIKRYKN-SSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH----GL-LTLPVKLEDT 153 (216)
Q Consensus 80 ~~~~~l~~~l~~~~~-~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~ 153 (216)
.+.+.++++++++.. ..++++|||+|++++|+.++|+++|||+++||+++|+.+++++++.. +. .+....+.+.
T Consensus 86 ~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (451)
T PLN02410 86 ECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPKGQQ 165 (451)
T ss_pred HhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccccCc
Confidence 567788888887642 23467999999999999999999999999999999999988876532 11 1111111123
Q ss_pred ceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 154 PLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 154 ~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.+.+||+|+++.+|+|...... .......+.. ....++|+||++|||+|||++++++++
T Consensus 166 ~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~ 224 (451)
T PLN02410 166 NELVPEFHPLRCKDFPVSHWAS--LESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQ 224 (451)
T ss_pred cccCCCCCCCChHHCcchhcCC--cHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHH
Confidence 3468999999999999765322 2223333333 234678999999999999999999985
No 6
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4e-39 Score=280.16 Aligned_cols=210 Identities=24% Similarity=0.406 Sum_probs=159.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEeccCCCCCCCCcccCCHHHHHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA-----PHVGVEPISDGFDEGGYAQAKNEDLYLKS 76 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (216)
++|||++|||+|||+|||++|||+|+++|++||++||+.+.+++.+ ++|+|+.+|+++++ +. ..+...+...
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~-~~--~~~~~~l~~a 82 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD-DP--PRDFFSIENS 82 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC-Cc--cccHHHHHHH
Confidence 5799999999999999999999999999999999999988765432 36999999987754 22 1233333444
Q ss_pred HHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhc----CCCcCCC-CCC
Q 042896 77 FEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH----GLLTLPV-KLE 151 (216)
Q Consensus 77 ~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~~~~~~-~~~ 151 (216)
+...+.+.++++++++... ++++|||+|++++|+.++|+++|||+++||+++++.++++++++. +...... ...
T Consensus 83 ~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (448)
T PLN02562 83 MENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ 161 (448)
T ss_pred HHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc
Confidence 4444677888888876432 357999999999999999999999999999999998888876642 1111100 011
Q ss_pred CCce-ecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 152 DTPL-SIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 152 ~~~~-~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.+++ .+||+|+++.+|+|.++..........+.+.+..+...+++||++|||+|||++++++++
T Consensus 162 ~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 226 (448)
T PLN02562 162 LEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQ 226 (448)
T ss_pred ccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHH
Confidence 1233 589999999999998765432223345667777788889999999999999999998764
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2e-38 Score=276.32 Aligned_cols=206 Identities=19% Similarity=0.245 Sum_probs=153.4
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEeccccccccCC-----CCceEEeccC----CCCCCCCcccCCH
Q 042896 1 NRRHVVLLPYPSQGHINPLLQFAKRLA-SKGVKATLATTHYTAKSICA-----PHVGVEPISD----GFDEGGYAQAKNE 70 (216)
Q Consensus 1 ~~~hv~~~p~p~~GH~~P~l~La~~La-~~G~~Vt~it~~~~~~~~~~-----~~i~~~~~~~----~~~~~~~~~~~~~ 70 (216)
+++||+++|||+|||++||++|||+|+ ++|++|||++|+.+.+++.+ ++|+++.+|. ++|+.+ .+.
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~----~~~ 79 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS----AHV 79 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC----ccH
Confidence 478999999999999999999999998 79999999999988654421 3689988884 333211 122
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhc--CCCcCCC
Q 042896 71 DLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH--GLLTLPV 148 (216)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~--~~~~~~~ 148 (216)
...+......+.+.++++++++. .+++|||+|++++|+.++|+++|||+++||+++|++++++++++. .....+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~ 156 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH 156 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc
Confidence 22222233345677888887642 357999999999999999999999999999999999888776642 1111010
Q ss_pred CCCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 149 KLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 149 ~~~~~~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
...++.+.+||+|+++.+|+|..+.++. ...+..+.+..+...+|+|||+|||+|||++++++++
T Consensus 157 ~~~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~ 221 (481)
T PLN02992 157 TVQRKPLAMPGCEPVRFEDTLDAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQ 221 (481)
T ss_pred ccCCCCcccCCCCccCHHHhhHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHh
Confidence 0112345789999999999997554332 2345566777778889999999999999999999874
No 8
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=5.8e-38 Score=274.83 Aligned_cols=207 Identities=22% Similarity=0.246 Sum_probs=154.7
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEecccccc----ccC-------C--CCceEEeccCCCCCCC
Q 042896 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKG----VKATLATTHYTAK----SIC-------A--PHVGVEPISDGFDEGG 63 (216)
Q Consensus 1 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G----~~Vt~it~~~~~~----~~~-------~--~~i~~~~~~~~~~~~~ 63 (216)
.++|||++|||+|||++||++|||+|++|| +.|||++|+.+.. ++. . .+|+++.+|++.++.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 378999999999999999999999999996 8999999876532 111 1 2589999987532212
Q ss_pred CcccCCHHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCC
Q 042896 64 YAQAKNEDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGL 143 (216)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~ 143 (216)
. .+...++..+.+.+.+.++++++++ .++++|||+|+|++|+.++|+++|||++.|||++|++++++++++...
T Consensus 82 ~---e~~~~~~~~~~~~~~~~l~~~L~~l---~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 A---AGVEEFISRYIQLHAPHVRAAIAGL---SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred c---ccHHHHHHHHHHhhhHHHHHHHHhc---CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 2 1333444444445667788888765 235799999999999999999999999999999999999998875321
Q ss_pred --CcCCCCCCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 144 --LTLPVKLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 144 --~~~~~~~~~~~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
...+..+.++++.+||+|+++.+|||.++.+... ...+.+....++..+++||++|||+|||++++++++
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~--~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKS--PNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCCc--HHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 1111111123467999999999999987754321 223445555667788999999999999999999985
No 9
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.2e-38 Score=272.28 Aligned_cols=211 Identities=19% Similarity=0.257 Sum_probs=153.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCC----CeEEEEecccccccc----C----C-CCceEEeccCCCCCC-CCccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKG----VKATLATTHYTAKSI----C----A-PHVGVEPISDGFDEG-GYAQA 67 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G----~~Vt~it~~~~~~~~----~----~-~~i~~~~~~~~~~~~-~~~~~ 67 (216)
+.|||++|||+|||+|||++|||+|+++| .+||+++++.+...+ . . ++|+|+.+|++.+.. +.+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 67999999999999999999999999998 445556665543221 1 1 469999999765321 11111
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCC
Q 042896 68 KNEDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLP 147 (216)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~ 147 (216)
.+....+..+...+...++++++++.. .++++|||+|++++|+.++|+++|||+++||+++|++++++++++......+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 161 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTP 161 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccc
Confidence 223333333334456788888887632 2457999999999999999999999999999999999999988753211111
Q ss_pred CC--CCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 148 VK--LEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 148 ~~--~~~~~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.. .+...+.+||+|+++.+|||+++.+.. +...+.+.+..+...+++||++|||+|||++++++++
T Consensus 162 ~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 162 GKNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred ccccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 11 111345789999999999998775432 2344566677777888999999999999999999984
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.1e-38 Score=275.85 Aligned_cols=206 Identities=18% Similarity=0.215 Sum_probs=147.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC------CCceEEecc----CCCCCCCCcccCCHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA------PHVGVEPIS----DGFDEGGYAQAKNED 71 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~------~~i~~~~~~----~~~~~~~~~~~~~~~ 71 (216)
++|||++|||+|||++||++|||+|++||++|||++|+.+..++.+ ..|+++.+| +|+|+ +.+...+..
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~~~~~ 84 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESSTDVP 84 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Ccccccccc
Confidence 5799999999999999999999999999999999999998765541 358999887 56765 333333332
Q ss_pred ----HHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhc--CCCc
Q 042896 72 ----LYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH--GLLT 145 (216)
Q Consensus 72 ----~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~--~~~~ 145 (216)
.++....+.+.+.++++++++ +++|||+|+|++|+.++|+++|||+++||+++++.++++++... ....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~ 159 (472)
T PLN02670 85 YTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGD 159 (472)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhccc
Confidence 122233334456666666542 57999999999999999999999999999999999888765421 1111
Q ss_pred CCCCCCCCce-ecCCCCC------CCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 146 LPVKLEDTPL-SIPGLPS------LNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 146 ~~~~~~~~~~-~vPg~p~------~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.+ +.++.+ .+||+.| ++.+|||+++............+.+......+++|||+|||+|||++++++++
T Consensus 160 ~~--~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~ 234 (472)
T PLN02670 160 LR--STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLS 234 (472)
T ss_pred CC--CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHH
Confidence 11 111222 3566422 56679998764322222223344555667788999999999999999999985
No 11
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-37 Score=271.73 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=147.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC---------CCceEEecc-----CCCCCCCCccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA---------PHVGVEPIS-----DGFDEGGYAQA 67 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~---------~~i~~~~~~-----~~~~~~~~~~~ 67 (216)
+.||+++|||+|||+|||++|||+|++||+.|||++|+.+..++.+ ..|+|+.+| +++|+ +.+..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~~~ 86 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCENL 86 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Ccccc
Confidence 4699999999999999999999999999999999999988654421 138999987 57775 43332
Q ss_pred CCHH--HHHHHHHH---hhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcC
Q 042896 68 KNED--LYLKSFED---NGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHG 142 (216)
Q Consensus 68 ~~~~--~~~~~~~~---~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~ 142 (216)
.+.. .++..+.. .+.+.+++++++. .++++|||+|++++|+.++|+++|||+++||+++++.+++++++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 2211 23322222 2345666666542 24679999999999999999999999999999999988876654321
Q ss_pred CCcCCCCCCCCceecCCCCC---CCCCCCCCCCCCCCCchHHHHHHHHHhhc-cCCCCEEEEcchhhhcHHHHHhhh
Q 042896 143 LLTLPVKLEDTPLSIPGLPS---LNFIDLPTFVKFPESYPAYLAMKLGQYSN-LDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 143 ~~~~~~~~~~~~~~vPg~p~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
....+..+++.++.+||+|+ ++.+|||+++..... .+.+...... .+.++||++|||+|||++++++++
T Consensus 164 ~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~ 236 (491)
T PLN02534 164 NAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPD----LDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYE 236 (491)
T ss_pred cccccCCCCCceeecCCCCccccccHHHCChhhcCccc----HHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHH
Confidence 11111112234567899985 899999986533211 1223333333 356889999999999999999985
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.7e-37 Score=267.24 Aligned_cols=208 Identities=16% Similarity=0.170 Sum_probs=152.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEecccccccc------CC----CCceEEeccCCCCCCCC-cccCC
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASK-GVKATLATTHYTAKSI------CA----PHVGVEPISDGFDEGGY-AQAKN 69 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~-G~~Vt~it~~~~~~~~------~~----~~i~~~~~~~~~~~~~~-~~~~~ 69 (216)
++||+++|||+|||+|||++|||+|+++ |+.|||++|..+..++ .+ ++|+++.+|++..+ ++ ....+
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCcc
Confidence 5799999999999999999999999987 9999999988655322 11 15899998853222 22 11112
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCC-ceeecccchhHHHHHHHHhc--CCCcC
Q 042896 70 EDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLY-GAAFFTNSATVCNIFCRMHH--GLLTL 146 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP-~v~f~~~~a~~~~~~~~~~~--~~~~~ 146 (216)
....+....+.+.+.++++++++. ++++|||+|+|++|+.++|+++||| +++|++++++.++++++++. +....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~ 158 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEG 158 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccc
Confidence 222222233346778888888763 2579999999999999999999999 69999999988888877642 11111
Q ss_pred CCCCCCCceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 147 PVKLEDTPLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 147 ~~~~~~~~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
+..+.++++.+||+|+++.+|+|..+.++.. .....+.+..++..+|+|||+|||+|||++++++++
T Consensus 159 ~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~--~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~ 225 (470)
T PLN03015 159 EYVDIKEPLKIPGCKPVGPKELMETMLDRSD--QQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALR 225 (470)
T ss_pred ccCCCCCeeeCCCCCCCChHHCCHhhcCCCc--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 1011124567999999999999986654322 223445566677889999999999999999999985
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.4e-37 Score=267.20 Aligned_cols=205 Identities=27% Similarity=0.454 Sum_probs=151.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHH--HHhCCCeEEEEeccccccccCC-----CCceEEeccCCCCCCCCcccCCHHHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKR--LASKGVKATLATTHYTAKSICA-----PHVGVEPISDGFDEGGYAQAKNEDLYL 74 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~--La~~G~~Vt~it~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~ 74 (216)
+.||+++|||+|||+|||++|||+ |++||++|||++|+.+.+++++ ..+++..+|+|+|+ +.+ .+...++
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~-~~~--~~~~~~~ 84 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPK-DDP--RAPETLL 84 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCC-Ccc--cCHHHHH
Confidence 579999999999999999999999 5699999999999988765543 34777777888876 322 2333444
Q ss_pred HHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCCCCCC-CC
Q 042896 75 KSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLPVKLE-DT 153 (216)
Q Consensus 75 ~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~-~~ 153 (216)
..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||+++||+++++++++++++.....+.+..++ ++
T Consensus 85 ~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~ 159 (456)
T PLN02210 85 KSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQ 159 (456)
T ss_pred HHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCC
Confidence 44444444556665543 2589999999999999999999999999999999999888876432212111111 23
Q ss_pred ceecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 154 PLSIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 154 ~~~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.+.+||+|+++.+|+|+++.+... ..+.....+..+...+++||++|||+|||++++++++
T Consensus 160 ~~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 220 (456)
T PLN02210 160 TVELPALPLLEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMA 220 (456)
T ss_pred eeeCCCCCCCChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHh
Confidence 457899999999999987654322 2122222244445678999999999999999999975
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9e-37 Score=267.83 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=151.2
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEecccccccc----------C---CCCceEEeccCCCCCCCCc
Q 042896 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKG--VKATLATTHYTAKSI----------C---APHVGVEPISDGFDEGGYA 65 (216)
Q Consensus 1 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G--~~Vt~it~~~~~~~~----------~---~~~i~~~~~~~~~~~~~~~ 65 (216)
+|.|||++|||+|||++||++|||+|+++| ++|||++|+.+..+. . .++|+|+.+|++.++ + .
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~-~ 78 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-T-T 78 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-c-c
Confidence 578999999999999999999999999998 999999998775421 1 135999999876532 1 1
Q ss_pred ccCCHHHHHHHHHHhhhHHHHHHHHHhhc-----CCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHh
Q 042896 66 QAKNEDLYLKSFEDNGSRTLSELIKRYKN-----SSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMH 140 (216)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~ 140 (216)
.......++. .+.+.+++.++++.. +.++++|||+|+|++|+.++|+++|||++.|||++|++++++++++
T Consensus 79 ~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 79 EDPTFQSYID----NQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred cchHHHHHHH----HHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 1111112222 234455565555421 1234699999999999999999999999999999999999998875
Q ss_pred cCC----CcCC-CCCCCCceecCCCC-CCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhh
Q 042896 141 HGL----LTLP-VKLEDTPLSIPGLP-SLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLF 214 (216)
Q Consensus 141 ~~~----~~~~-~~~~~~~~~vPg~p-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~ 214 (216)
... .+.+ ..+..+++.+||++ +++.+|+|+++.+. .+.+.+.+..+.+.+++||++|||+|||+++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l 230 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQALKFF 230 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 321 1111 11112346799995 89999999876432 23456667777888999999999999999999987
Q ss_pred h
Q 042896 215 L 215 (216)
Q Consensus 215 ~ 215 (216)
.
T Consensus 231 ~ 231 (481)
T PLN02554 231 S 231 (481)
T ss_pred H
Confidence 5
No 15
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-36 Score=263.89 Aligned_cols=211 Identities=19% Similarity=0.264 Sum_probs=149.6
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEecccccc-c----cC---C--CCceEEeccCCCCCCCCcccC
Q 042896 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKG--VKATLATTHYTAK-S----IC---A--PHVGVEPISDGFDEGGYAQAK 68 (216)
Q Consensus 1 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G--~~Vt~it~~~~~~-~----~~---~--~~i~~~~~~~~~~~~~~~~~~ 68 (216)
+++||+++|+|+|||+|||++|||+|+++| +.|||++|+.+.. . +. + ++|+|+.+|++.+........
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 81 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQ 81 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccccc
Confidence 467999999999999999999999999998 9999999987652 1 11 1 369999999643210101122
Q ss_pred CHHHHHHHHHHhhhH----HHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCC
Q 042896 69 NEDLYLKSFEDNGSR----TLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLL 144 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~ 144 (216)
+....+..+...+.+ .+++++++...+.+|++|||+|+|++|+.++|+++|||+++||+++|++++++++++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 82 SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 344333223333433 3444444332222456999999999999999999999999999999999998887753211
Q ss_pred c---CCCCCCCCceecCCC-CCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 145 T---LPVKLEDTPLSIPGL-PSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 145 ~---~~~~~~~~~~~vPg~-p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
. .+..+.+..+.+||+ |+++.+|+|+++.+.+. +..+.+..+..++++++|+|||+|||.+++++++
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~ 232 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFL 232 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHH
Confidence 1 000111244679999 68999999987753321 3344566667889999999999999999998874
No 16
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.6e-36 Score=262.25 Aligned_cols=208 Identities=26% Similarity=0.408 Sum_probs=159.9
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC----CCceEEeccCCCCCCCCcccCCHHHHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSICA----PHVGVEPISDGFDEGGYAQAKNEDLYLK 75 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~--G~~Vt~it~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (216)
++||+++|||++||++||++||++|++| ||+|||++|+.+.+++.+ ++|+|+.+|+++|+ +.+...+...++.
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~-~~~~~~~~~~~~~ 88 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPS-ELVRAADFPGFLE 88 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCC-ccccccCHHHHHH
Confidence 5799999999999999999999999999 999999999988766554 37999999987665 3332334444444
Q ss_pred HHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhc----CCCcCCCCC-
Q 042896 76 SFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH----GLLTLPVKL- 150 (216)
Q Consensus 76 ~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~----~~~~~~~~~- 150 (216)
.+.+.+.+.++++++++. +++||||+|++++|+.++|+++|||+|.||+++++.+++++++.. +..+.+...
T Consensus 89 ~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (459)
T PLN02448 89 AVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSES 165 (459)
T ss_pred HHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccc
Confidence 444445677888887653 367999999999999999999999999999999988888777642 111111110
Q ss_pred CCCce-ecCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 151 EDTPL-SIPGLPSLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 151 ~~~~~-~vPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.++.+ .+||+++++.+|+|.++.+. .....+.+.+..++..++++|++|||+|||++++++++
T Consensus 166 ~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 229 (459)
T PLN02448 166 GEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALK 229 (459)
T ss_pred cCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHH
Confidence 11223 48999999999999876543 22334566677777888999999999999999999885
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.7e-36 Score=261.96 Aligned_cols=211 Identities=22% Similarity=0.265 Sum_probs=147.4
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCC---eEEEEecccccc-----ccCC-----CCceEEeccCCCCCCCCcc-
Q 042896 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKGV---KATLATTHYTAK-----SICA-----PHVGVEPISDGFDEGGYAQ- 66 (216)
Q Consensus 1 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~---~Vt~it~~~~~~-----~~~~-----~~i~~~~~~~~~~~~~~~~- 66 (216)
+++||+++|||+|||+|||++|||+|++||. .||++++..+.. .+.+ ++|+|+.+|++..+.+.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 3689999999999999999999999999994 567776554321 1111 3699999986432111111
Q ss_pred cCCHHHHHHHHHHhhhHHHHHHHHHhhcC----CC-CceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhc
Q 042896 67 AKNEDLYLKSFEDNGSRTLSELIKRYKNS----SF-PVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHH 141 (216)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~-~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~ 141 (216)
.......+..+...+.+.+++.++++..+ ++ |++|||+|+|++|+.++|+++|||+++|||++|+.++++++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 11121222223334556777777765321 12 56999999999999999999999999999999999998887653
Q ss_pred CC--CcCC--CCCCCCceecCCCC-CCCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 142 GL--LTLP--VKLEDTPLSIPGLP-SLNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 142 ~~--~~~~--~~~~~~~~~vPg~p-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
.. .... ....++++.+||+| +++..|+|.++.+... .+.+.+..++..+++|||+|||+|||++++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 236 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKES----YEAWVEIAERFPEAKGILVNSFTELEPNAFDYFS 236 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcch----HHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHH
Confidence 21 1101 11112446799995 6999999976654321 2345566677888999999999999999999984
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-35 Score=256.89 Aligned_cols=197 Identities=22% Similarity=0.300 Sum_probs=140.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC----C-C--ceEEecc--CCCCCCCCcccCCHH-
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA----P-H--VGVEPIS--DGFDEGGYAQAKNED- 71 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~----~-~--i~~~~~~--~~~~~~~~~~~~~~~- 71 (216)
++||+++|||+|||++||++|||+|+++|++|||++|+.+.+++.+ + + +++.++| +|+|+ +.+...+..
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~-g~e~~~~~~~ 83 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPV-GTETVSEIPV 83 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCC-cccccccCCh
Confidence 6799999999999999999999999999999999999988654432 1 2 5666676 67765 333322222
Q ss_pred HHHHHHH---HhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCCC
Q 042896 72 LYLKSFE---DNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLPV 148 (216)
Q Consensus 72 ~~~~~~~---~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 148 (216)
.....+. ..+.+.++++++++ +++|||+|+ ++|+.++|+++|||++.||+++|+.++++++ ..+..
T Consensus 84 ~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~---- 152 (453)
T PLN02764 84 TSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL---- 152 (453)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC----
Confidence 1111222 23346667666542 469999995 8999999999999999999999998888763 11110
Q ss_pred CCCCCceecCCCCC----CCCCCCCCCCC--CCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 149 KLEDTPLSIPGLPS----LNFIDLPTFVK--FPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 149 ~~~~~~~~vPg~p~----~~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
. ..+||+|. ++.+|+|.+.. .....+.......+..+..++++||++|||+|||++++++++
T Consensus 153 ---~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 153 ---G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred ---C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 1 12489983 78889987532 111112233344444467788999999999999999999985
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=7.4e-35 Score=252.61 Aligned_cols=193 Identities=21% Similarity=0.364 Sum_probs=135.3
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEec--c--CCCCCCCCcccCCHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA-----PHVGVEPI--S--DGFDEGGYAQAKNEDL 72 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~-----~~i~~~~~--~--~~~~~~~~~~~~~~~~ 72 (216)
++||+++|||++||++||++|||+|++||++|||+|++.+..++.+ ..+++..+ + +++|+ +.+...+...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l~~ 82 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPA-GAETTSDIPI 82 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCC-CcccccchhH
Confidence 6799999999999999999999999999999999999987765532 24666654 3 45665 3333323322
Q ss_pred HH-HHHH---HhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCCC
Q 042896 73 YL-KSFE---DNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLPV 148 (216)
Q Consensus 73 ~~-~~~~---~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 148 (216)
.+ ..+. ..+.+.+++++++ .++||||+| +++|+.++|+++|||++.||+++|+.++ +++++.+..
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~-----~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~---- 151 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRA-----LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL---- 151 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc----
Confidence 11 1122 2233445555543 257999999 5899999999999999999999998765 444332110
Q ss_pred CCCCCceecCCCCC----CCCCCCCCCCCCCCCchHHHHHHHHH-hhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 149 KLEDTPLSIPGLPS----LNFIDLPTFVKFPESYPAYLAMKLGQ-YSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 149 ~~~~~~~~vPg~p~----~~~~dlp~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
+ ..+||+|. ++.+|+|.+. . .....+.+.+. .+...+++||++|||+|||++++++++
T Consensus 152 ---~--~~~pglp~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~ 214 (442)
T PLN02208 152 ---G--VPPPGYPSSKVLFRENDAHALA--T--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYIS 214 (442)
T ss_pred ---C--CCCCCCCCcccccCHHHcCccc--c--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHH
Confidence 1 22689885 6788999641 1 11223344433 346778999999999999999999985
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=8.8e-35 Score=252.39 Aligned_cols=194 Identities=22% Similarity=0.277 Sum_probs=134.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-----CCceEEecc----CCCCCCCCcccCCHHH
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA-----PHVGVEPIS----DGFDEGGYAQAKNEDL 72 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~-----~~i~~~~~~----~~~~~~~~~~~~~~~~ 72 (216)
++||+++|||+|||+|||++|||+|+++|++|||++|+.+..++.+ ++|+|..++ +++|+ +.+...+...
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l~~ 82 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPF-GAETASDLPN 82 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCC-cccccccchh
Confidence 6799999999999999999999999999999999999988765532 357885553 56665 3332223321
Q ss_pred H-HHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHHHHhcCCCcCCCCCC
Q 042896 73 Y-LKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFCRMHHGLLTLPVKLE 151 (216)
Q Consensus 73 ~-~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (216)
. ...+... .+.+++.++++..+ .++||||+|+ ++|+.++|+++|||++.||++++++++++++... +.
T Consensus 83 ~~~~~~~~a-~~~l~~~l~~~L~~-~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--------~~ 151 (446)
T PLN00414 83 STKKPIFDA-MDLLRDQIEAKVRA-LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--------EL 151 (446)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHhc-CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh--------hc
Confidence 1 1122221 22344444443222 2579999996 8999999999999999999999999988876211 00
Q ss_pred CCceecCCCCC----CCCCCC--CCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhhh
Q 042896 152 DTPLSIPGLPS----LNFIDL--PTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLFL 215 (216)
Q Consensus 152 ~~~~~vPg~p~----~~~~dl--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~~ 215 (216)
+ ..+||+|. ++.+|+ |.++. . ....+.+..+...+++||++|||+|||++++++++
T Consensus 152 ~--~~~pg~p~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 213 (446)
T PLN00414 152 G--FPPPDYPLSKVALRGHDANVCSLFA-N-----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIE 213 (446)
T ss_pred C--CCCCCCCCCcCcCchhhcccchhhc-c-----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHH
Confidence 1 12577774 444443 34332 1 11234455567778999999999999999999885
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.1e-33 Score=244.89 Aligned_cols=207 Identities=21% Similarity=0.326 Sum_probs=141.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC---------C----CceEEecc---CCCCCCCCc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA---------P----HVGVEPIS---DGFDEGGYA 65 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~---------~----~i~~~~~~---~~~~~~~~~ 65 (216)
+.||+++|+|++||+|||++||++|++||++|||++|+.+..++++ + .+....+| +++|+ +.+
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g~e 83 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-GCE 83 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-Ccc
Confidence 5799999999999999999999999999999999999988754431 1 23344455 45665 332
Q ss_pred ccC--------CHHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchhHHHHHH
Q 042896 66 QAK--------NEDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSATVCNIFC 137 (216)
Q Consensus 66 ~~~--------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~~~~~~~ 137 (216)
... +...+...+.. ..+.+.+.++++.++. ++||||+|.+++|+.++|+++|||+|+||+++++.+++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~-~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLETT-RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhcC-CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 221 11223333332 2334555555543332 5799999999999999999999999999999999888776
Q ss_pred HHhcCCCcCCCCCCCCceecCCCCC---CCCCCCCCCCCCCCCchHHHHHHHHHhhccCCCCEEEEcchhhhcHHHHHhh
Q 042896 138 RMHHGLLTLPVKLEDTPLSIPGLPS---LNFIDLPTFVKFPESYPAYLAMKLGQYSNLDKADWIFGNTFQELEGEVRVLF 214 (216)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~vPg~p~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvNsf~eLE~~~~~~~ 214 (216)
++..........+.+..+.+||+|+ ++..+++.. + ....+.+.+....+...++++|++|||+|||+++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~ 237 (482)
T PLN03007 162 CIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--D--EESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFY 237 (482)
T ss_pred HHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--C--CchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHH
Confidence 5532110000111123456899973 566677742 1 12223444445555678899999999999999999887
Q ss_pred h
Q 042896 215 L 215 (216)
Q Consensus 215 ~ 215 (216)
.
T Consensus 238 ~ 238 (482)
T PLN03007 238 K 238 (482)
T ss_pred H
Confidence 4
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.64 E-value=4.5e-16 Score=134.09 Aligned_cols=126 Identities=18% Similarity=0.179 Sum_probs=89.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCc-cc------C---CHHH
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYA-QA------K---NEDL 72 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~------~---~~~~ 72 (216)
.||+++++|++||++|++.||++|++|||+|+|++++.....+...+++|..+++..+..... .. . ....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLLG 80 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhhcccccccchHHHHH
Confidence 489999999999999999999999999999999999977665655788888876532210000 00 0 0111
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccch
Q 042896 73 YLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSA 130 (216)
Q Consensus 73 ~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 130 (216)
....+...+...+.++++.+. . .++||||+|.+..|+..+|+++|||++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~-~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 81 ALRLLRREAEAMLDDLVAAAR-D-WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-c-cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 122233333344444444332 2 3589999999999999999999999999987664
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.61 E-value=3.8e-15 Score=128.19 Aligned_cols=119 Identities=19% Similarity=0.239 Sum_probs=84.4
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCC-Ccc--cCCHHHHHHHHHHhhhHH
Q 042896 8 LPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGG-YAQ--AKNEDLYLKSFEDNGSRT 84 (216)
Q Consensus 8 ~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 84 (216)
+.+|++||++|++.||++|.++||+||+++++.+.+.+...++++..+++..+..+ .+. ..+.......+...+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDV 80 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999888777767889988875433211 100 012222333333333334
Q ss_pred HHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeeccc
Q 042896 85 LSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 85 l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 128 (216)
+.++++.+ ++ .++||||+|.++.|+..+|+++|||+|.+++.
T Consensus 81 ~~~l~~~~-~~-~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 81 LPQLEEAY-KG-DRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHh-cC-CCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 44444333 22 25799999999999999999999999988654
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.49 E-value=3.4e-15 Score=132.02 Aligned_cols=137 Identities=26% Similarity=0.364 Sum_probs=89.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC----CC--------ceEEeccCCCCCCCCccc-C
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA----PH--------VGVEPISDGFDEGGYAQA-K 68 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~----~~--------i~~~~~~~~~~~~~~~~~-~ 68 (216)
+.|++++|+|++||++|+++||++|+++||+||++++..+...... .. +.+...+++++. +.... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhcc-chHHHHH
Confidence 4689999999999999999999999999999999999876543221 01 111111122222 11100 0
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhc-CCCCceEEEeCCCCccHHHHHHHhC-CCceeecccchhHHHHHHHH
Q 042896 69 NEDLYLKSFEDNGSRTLSELIKRYKN-SSFPVNCVVYDSFLPWALDVAKEYG-LYGAAFFTNSATVCNIFCRM 139 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~d~vI~D~~~~~~~~vA~~lg-iP~v~f~~~~a~~~~~~~~~ 139 (216)
........+...|...+++.+..+.. ....+||+|+|.+..|...+|.+.+ |+...+++.++...++..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~ 156 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPS 156 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcC
Confidence 11111233444455566665544321 2223999999999999999988775 99999999988877666544
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.29 E-value=3.7e-12 Score=93.91 Aligned_cols=122 Identities=18% Similarity=0.250 Sum_probs=77.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHh--hh
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDN--GS 82 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 82 (216)
|++...++.||++|++.||++|.+|||+|++.+++...+.+...+++|++++.. . ................+. ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~ 77 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGD--S-RLPRSLEPLANLRRLARLIRGL 77 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSC--G-GGGHHHHHHHHHHCHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCC--c-CcCcccchhhhhhhHHHHhhhh
Confidence 688999999999999999999999999999999998887776689999988743 0 111100011111000000 01
Q ss_pred HHHHHHHHHhhc-------CCCCceEEEeCCCCccHHHHHHHhCCCceeecccc
Q 042896 83 RTLSELIKRYKN-------SSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 129 (216)
Q Consensus 83 ~~l~~~l~~~~~-------~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 129 (216)
..+.+.+++... .....|+++.+.....+..+|+++|||.+.....+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 78 EEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 112222222111 01135788888888888999999999999876655
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.86 E-value=3.9e-08 Score=87.50 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=73.2
Q ss_pred ceEEEE-cCCCccChHHHHHHHHHHHhCCCeEEEEecccccc--ccCCCCceEEeccCCCCC-C-CCccc------C---
Q 042896 3 RHVVLL-PYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK--SICAPHVGVEPISDGFDE-G-GYAQA------K--- 68 (216)
Q Consensus 3 ~hv~~~-p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~--~~~~~~i~~~~~~~~~~~-~-~~~~~------~--- 68 (216)
.+|+++ |.++.||++-+..+++.|++|||+||++++..... .....+++...++...+. . ..... .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVVA 100 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhhh
Confidence 367755 88999999999999999999999999998754211 111134554443210000 0 00000 0
Q ss_pred CHHHH----HHHHHHhhhH-----HHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHh-CCCceeecccc
Q 042896 69 NEDLY----LKSFEDNGSR-----TLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEY-GLYGAAFFTNS 129 (216)
Q Consensus 69 ~~~~~----~~~~~~~~~~-----~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~~~~ 129 (216)
+...+ ...+...|.. .++++++ .+..++|+||+|.+..++..+|+.+ |+|.|..++.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~---~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 101 DSSTVTADNYMGLVRMISDQFDLPNVKNLIA---NKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCHHHHHHHh---cCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 00000 1111222322 2333332 1224699999999988888899999 99987776644
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.83 E-value=5.4e-10 Score=99.14 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=57.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccccc--CCCCceEEeccCCCCCCCCcc-cCCHH-H-------
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSI--CAPHVGVEPISDGFDEGGYAQ-AKNED-L------- 72 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~-~~~~~-~------- 72 (216)
+|+++|. +.||+++|..+++.|++|||+||++++......- ...++++..++.+.+....+. ..+.. .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 6888885 7899999999999999999999999886532211 125677777765443321111 11110 0
Q ss_pred ---HHHHHH----------HhhhHHH--HHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeeccc
Q 042896 73 ---YLKSFE----------DNGSRTL--SELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 73 ---~~~~~~----------~~~~~~l--~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 128 (216)
....+. ..|...+ +++++.+.. .++|++|+|.+.+|+..+|+.+|+|.+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~ 149 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIISSS 149 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEecc
Confidence 000000 0111000 011111111 24899999998888888999999998775443
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.40 E-value=3.8e-07 Score=79.11 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=49.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccC
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISD 57 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~ 57 (216)
+.+|+++..|..||++|.+.||+.|.++||+|++++++...+.+...++.|..++.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~~ 56 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPI 56 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcceeeccc
Confidence 46899999999999999999999999999999999999888877665677776653
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.38 E-value=6e-06 Score=68.90 Aligned_cols=120 Identities=16% Similarity=0.146 Sum_probs=68.9
Q ss_pred eEEEEcCC-CccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHHHHHHH---HH
Q 042896 4 HVVLLPYP-SQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSF---ED 79 (216)
Q Consensus 4 hv~~~p~p-~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 79 (216)
||++.... |.||+.-.+.|+++| |||+|+|++.......+.. .+....+++ +.........+........ ..
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-RFPVREIPG-LGPIQENGRLDRWKTVRNNIRWLA 77 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-ccCEEEccC-ceEeccCCccchHHHHHHHHHhhH
Confidence 55555544 789999999999999 6999999998755433322 244444442 1110001111211111111 11
Q ss_pred hhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccch
Q 042896 80 NGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSA 130 (216)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a 130 (216)
.....++++++.+.+ .+||+||+|. .+.+...|+..|||++.+.....
T Consensus 78 ~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~ 125 (318)
T PF13528_consen 78 RLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYW 125 (318)
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHH
Confidence 112233343433322 2589999995 45567888999999998765543
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.32 E-value=6.2e-06 Score=69.29 Aligned_cols=117 Identities=12% Similarity=0.075 Sum_probs=64.9
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCce-EEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHH
Q 042896 8 LPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVG-VEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLS 86 (216)
Q Consensus 8 ~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (216)
+.-.|.||+.|.+.++++|.+ ||+|+++++......++..++. +...|. ..-.......+....+..........+.
T Consensus 6 ~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (321)
T TIGR00661 6 VCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPG-IKLKGEDGKVNIVKTLRNKEYSPKKAIR 83 (321)
T ss_pred EeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCC-ceEeecCCcCcHHHHHHhhccccHHHHH
Confidence 455677999999999999999 9999999876633223323333 333221 1100000111111111100010011233
Q ss_pred HHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccc
Q 042896 87 ELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 129 (216)
Q Consensus 87 ~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 129 (216)
+..+-+. + .+||+||+| +-+.+..+|+.+|||.+.+.-+.
T Consensus 84 ~~~~~l~-~-~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 84 REINIIR-E-YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HHHHHHH-h-cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 3333222 2 257999999 56667889999999999665443
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.76 E-value=0.00052 Score=58.53 Aligned_cols=118 Identities=12% Similarity=0.003 Sum_probs=69.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc--cCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhh
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS--ICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNG 81 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (216)
+|++..-..-||+.|.+.+|+.|.++||+|+|+.+....+. ++..++.+..++.. ++........ +.......
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~----~l~~~~~~~~-~~~~~~~~ 77 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG----KLRRYFDLKN-IKDPFLVM 77 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc----CcCCCchHHH-HHHHHHHH
Confidence 45555555559999999999999999999999997654332 22346777766521 1211111211 11111111
Q ss_pred hH--HHHHHHHHhhcCCCCceEEEeCCCCcc--HHHHHHHhCCCceeecccchh
Q 042896 82 SR--TLSELIKRYKNSSFPVNCVVYDSFLPW--ALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 82 ~~--~l~~~l~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~ 131 (216)
.. ....++++ .+||+||...-+.. +...|..+|+|.++.-.....
T Consensus 78 ~~~~~~~~i~~~-----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~ 126 (352)
T PRK12446 78 KGVMDAYVRIRK-----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP 126 (352)
T ss_pred HHHHHHHHHHHh-----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc
Confidence 11 11122332 25799999764433 456778899999886554433
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.003 Score=53.98 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=70.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEeccccccc-cCC-CCceEEeccCCCCCCCCcccCCHHHHHHHHHHh
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGV-KATLATTHYTAKS-ICA-PHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDN 80 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~-~Vt~it~~~~~~~-~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (216)
.|++....+-||+.|-+.|++.|.++|+ +|.++.+....+. +.. .++.++.++.+-.. +..........+..+..
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~~~- 79 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLR-RKGSLKLLKAPFKLLKG- 79 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEeccccc-ccCcHHHHHHHHHHHHH-
Confidence 3556666666999999999999999999 5777755544332 222 57788877642211 11111112222222221
Q ss_pred hhHHHHHHHHHhhcCCCCceEEEeCCCCcc--HHHHHHHhCCCceeecccchh
Q 042896 81 GSRTLSELIKRYKNSSFPVNCVVYDSFLPW--ALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a~ 131 (216)
....+.++++. +||+||.=..+.. +.-.|..+|||.+..-+-...
T Consensus 80 -~~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~ 126 (357)
T COG0707 80 -VLQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP 126 (357)
T ss_pred -HHHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc
Confidence 12334455543 4799999655544 445677899999987654433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.23 E-value=0.0062 Score=51.22 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=63.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc--cCCCCceEEeccCCCCCCCCcccCCHHHHHHHH--HH
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS--ICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSF--ED 79 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 79 (216)
+|++..--..||......|++.|.++||+|++++....... ....++++..++-. +.........+...+ ..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVG----GLRRKGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEec----CcCCCChHHHHHHHHHHHH
Confidence 35566655669999999999999999999999987543211 11135666666521 010111111111111 11
Q ss_pred hhhHHHHHHHHHhhcCCCCceEEEeCCCC-c-cHHHHHHHhCCCceee
Q 042896 80 NGSRTLSELIKRYKNSSFPVNCVVYDSFL-P-WALDVAKEYGLYGAAF 125 (216)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f 125 (216)
. ...+..++++ .+||+|++..-. . ++...|+..|+|.+..
T Consensus 77 ~-~~~~~~~i~~-----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 77 G-VLQARKILKK-----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred H-HHHHHHHHHh-----cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 0 1123333332 257999987532 3 3456678889999864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.02 E-value=0.015 Score=48.89 Aligned_cols=112 Identities=21% Similarity=0.111 Sum_probs=64.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc-cc-CCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHh-
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK-SI-CAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDN- 80 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~-~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (216)
+|+++.--..||+....+|++.|.++||+|++++.+.... .. ...+++++.++-.- . ...+....+......
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~----~-~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGG----L-RRKGSFRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccC----c-CCCChHHHHHHHHHHH
Confidence 6788887777999977899999999999999998643211 11 12456666654211 0 011111111111000
Q ss_pred -hhHHHHHHHHHhhcCCCCceEEEeCCCCc-c-HHHHHHHhCCCceee
Q 042896 81 -GSRTLSELIKRYKNSSFPVNCVVYDSFLP-W-ALDVAKEYGLYGAAF 125 (216)
Q Consensus 81 -~~~~l~~~l~~~~~~~~~~d~vI~D~~~~-~-~~~vA~~lgiP~v~f 125 (216)
....+.+++++ .+||+|++..... + +..+++..|+|.+.+
T Consensus 77 ~~~~~l~~~i~~-----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 77 KAVFQARRILKK-----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHh-----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 01123333332 2589999975432 2 334577789999754
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.95 E-value=0.019 Score=48.65 Aligned_cols=113 Identities=17% Similarity=0.144 Sum_probs=65.4
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc--ccCCCCceEEeccCCCCCCCCcccCCHHHHHH--HHH
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK--SICAPHVGVEPISDGFDEGGYAQAKNEDLYLK--SFE 78 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (216)
.+|+++.-...||..-++.|++.|.++||+|++++...... .....+++++.++.. +............ .+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~l~~~~~~~ 77 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSG----GLRRKGSLANLKAPFKLL 77 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEecc----CcCCCChHHHHHHHHHHH
Confidence 46788776666999999999999999999999998865321 112236666666421 1111111111110 111
Q ss_pred HhhhHHHHHHHHHhhcCCCCceEEEeCCCC-ccH-HHHHHHhCCCceee
Q 042896 79 DNGSRTLSELIKRYKNSSFPVNCVVYDSFL-PWA-LDVAKEYGLYGAAF 125 (216)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~-~~~-~~vA~~lgiP~v~f 125 (216)
.. ...+.+++++ .+||+|++.... .|. ..+++..++|.+..
T Consensus 78 ~~-~~~~~~~ik~-----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 78 KG-VLQARKILKR-----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred HH-HHHHHHHHHh-----cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 10 1122333332 258999999743 444 34566688999765
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.70 E-value=0.059 Score=46.36 Aligned_cols=104 Identities=12% Similarity=0.061 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHhhcCCC
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYKNSSF 97 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 97 (216)
++.+||+.|+++||+|+++|........ .+++.+.++..... ......-...+....... ..+.+.+..+..++-
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 86 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPPP--GGVRVVRYRPPRGP-TSGTHPYLREFEEAVLRG--QAVARALLALRAKGF 86 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCCC--CCeeEEEecCCCCC-CCCCCccchhHHHHHHHH--HHHHHHHHHHHhcCC
Confidence 4788999999999999999887653221 15777766532111 000001111111111111 112222223322233
Q ss_pred CceEEEeCCCCccHHHHHHHh-CCCceeec
Q 042896 98 PVNCVVYDSFLPWALDVAKEY-GLYGAAFF 126 (216)
Q Consensus 98 ~~d~vI~D~~~~~~~~vA~~l-giP~v~f~ 126 (216)
+||+|++-..++++..+.+.+ ++|.+.+.
T Consensus 87 ~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 87 RPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred CCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 589999997766666676664 58887743
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.36 E-value=0.038 Score=47.70 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=31.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
++|++..--..||+.|- .|++.|.++|.+|+++....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 56777776677999999 99999999999999988753
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.97 E-value=0.065 Score=44.17 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=35.9
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEecccccc---ccCCCCceEEeccC
Q 042896 11 PSQGHINPLLQFAKRLASKGVKATLATTHYTAK---SICAPHVGVEPISD 57 (216)
Q Consensus 11 p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~---~~~~~~i~~~~~~~ 57 (216)
-|.||+.=.+.||+.|.++|++|+|++...... .+...++.+..+++
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~ 61 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPD 61 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecC
Confidence 478999999999999999999999999875432 22235666666653
No 39
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.36 E-value=0.33 Score=40.01 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=26.1
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
-|+-.-...|++.|+++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 478888999999999999999999986543
No 40
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.35 E-value=0.52 Score=41.03 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=39.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc---cCCCCceEEecc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS---ICAPHVGVEPIS 56 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~---~~~~~i~~~~~~ 56 (216)
+.+|.++...-.|+-.=+..+|+.|+++||+|++++....... ....++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~ 60 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLP 60 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECC
Confidence 4567777776667777789999999999999999986532211 122567777664
No 41
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.98 E-value=0.26 Score=41.79 Aligned_cols=103 Identities=21% Similarity=0.216 Sum_probs=55.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccccccC----CCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHH
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYTAKSIC----APHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELI 89 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 89 (216)
|+-..+.+|++.|+++||+|+++++........ ..++.+..++.. +. ..............+. ..+...+
T Consensus 22 G~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~----~~~~~~~ 95 (398)
T cd03800 22 GQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAG-PA-EYLPKEELWPYLDEFA----DDLLRFL 95 (398)
T ss_pred ceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccc-cc-cCCChhhcchhHHHHH----HHHHHHH
Confidence 678899999999999999999998754332211 145666655421 11 0000000111111111 1122222
Q ss_pred HHhhcCCCCceEEEeCCCC-cc-HHHHHHHhCCCceee
Q 042896 90 KRYKNSSFPVNCVVYDSFL-PW-ALDVAKEYGLYGAAF 125 (216)
Q Consensus 90 ~~~~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f 125 (216)
+. ...++|+|++.... .+ +..+++.+|+|.+..
T Consensus 96 ~~---~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 96 RR---EGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred Hh---cCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 22 11257999887533 33 456778899998753
No 42
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.92 E-value=0.17 Score=43.15 Aligned_cols=36 Identities=6% Similarity=0.088 Sum_probs=28.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.+|++..--..||+.|-. +++.|.++++++.++...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 367777766679999998 999999988777777643
No 43
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.71 E-value=0.47 Score=46.00 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=62.1
Q ss_pred cChHHHHHHHHHHHhCC--CeEEEEecccccccc------------------------CCCCceEEeccCCCCCCCCccc
Q 042896 14 GHINPLLQFAKRLASKG--VKATLATTHYTAKSI------------------------CAPHVGVEPISDGFDEGGYAQA 67 (216)
Q Consensus 14 GH~~P~l~La~~La~~G--~~Vt~it~~~~~~~~------------------------~~~~i~~~~~~~~~~~~~~~~~ 67 (216)
|+..=.++||++|+++| |+|.++|-....+.+ .+++.+++.+|.|... .+-..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~-~~l~K 274 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRD-KYIPK 274 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCC-CCcCH
Confidence 57777899999999998 899999864332111 0136777777755332 11112
Q ss_pred CCHHHHHHHHHHhhhHHHHH----HHHHhhc-CCCCceEEEeCCCC-ccH-HHHHHHhCCCceee
Q 042896 68 KNEDLYLKSFEDNGSRTLSE----LIKRYKN-SSFPVNCVVYDSFL-PWA-LDVAKEYGLYGAAF 125 (216)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~~----~l~~~~~-~~~~~d~vI~D~~~-~~~-~~vA~~lgiP~v~f 125 (216)
..+..++..|...+...+.+ +.+++.. ....||+|-+-.+. .++ ..+++.+|||.|..
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T 339 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLT 339 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEE
Confidence 22333344444332222222 1222211 11247888877644 344 57788899997754
No 44
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.50 E-value=0.29 Score=41.48 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=45.0
Q ss_pred ceEEEEcC--CCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCceEEeccC
Q 042896 3 RHVVLLPY--PSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSICA-PHVGVEPISD 57 (216)
Q Consensus 3 ~hv~~~p~--p~~GH~~P~l~La~~La~~--G~~Vt~it~~~~~~~~~~-~~i~~~~~~~ 57 (216)
++|++..- .|-||+-=+..+|+.|++. |++|++++......-++. .+++++.+|.
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPs 69 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPS 69 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCc
Confidence 47777764 4669999999999999996 999999998776655554 6899999884
No 45
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=94.50 E-value=1.3 Score=41.86 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=64.0
Q ss_pred ceEEEEcCCC-------------ccChHHHHHHHHH--------HHhCCC----eEEEEecccccc----------ccCC
Q 042896 3 RHVVLLPYPS-------------QGHINPLLQFAKR--------LASKGV----KATLATTHYTAK----------SICA 47 (216)
Q Consensus 3 ~hv~~~p~p~-------------~GH~~P~l~La~~--------La~~G~----~Vt~it~~~~~~----------~~~~ 47 (216)
.+|+++..-+ -|+..=.++||++ |+++|| +|+++|-..... ....
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~ 335 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG 335 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccC
Confidence 4677766555 4777788888887 568999 677888543211 1111
Q ss_pred -CCceEEeccCCCCCCC--Cc---ccCCHHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCc-cH-HHHHHHhC
Q 042896 48 -PHVGVEPISDGFDEGG--YA---QAKNEDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLP-WA-LDVAKEYG 119 (216)
Q Consensus 48 -~~i~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~-~~-~~vA~~lg 119 (216)
.+.+++.+|-+.+. + +. ...++..++..|.. ...+.+.++. ..+||+|++-...+ ++ ..+|+++|
T Consensus 336 ~~~~~I~rvp~g~~~-~~~~~~~i~k~~l~p~l~~f~~---~~~~~~~~~~---~~~pDlIHahy~d~glva~lla~~lg 408 (784)
T TIGR02470 336 TEHAWILRVPFRTEN-GIILRNWISRFEIWPYLETFAE---DAEKEILAEL---QGKPDLIIGNYSDGNLVASLLARKLG 408 (784)
T ss_pred CCceEEEEecCCCCc-ccccccccCHHHHHHHHHHHHH---HHHHHHHHhc---CCCCCEEEECCCchHHHHHHHHHhcC
Confidence 46777777754322 1 01 11122222222222 2222232221 23589999987663 54 57889999
Q ss_pred CCcee
Q 042896 120 LYGAA 124 (216)
Q Consensus 120 iP~v~ 124 (216)
||.+.
T Consensus 409 VP~v~ 413 (784)
T TIGR02470 409 VTQCT 413 (784)
T ss_pred CCEEE
Confidence 99553
No 46
>PLN00142 sucrose synthase
Probab=94.40 E-value=0.56 Score=44.35 Aligned_cols=107 Identities=13% Similarity=0.176 Sum_probs=57.0
Q ss_pred cChHHHHH--------HHHHHHhCCCeEE----EEeccccc-------c---ccCC-CCceEEeccCCCCCCCCc---cc
Q 042896 14 GHINPLLQ--------FAKRLASKGVKAT----LATTHYTA-------K---SICA-PHVGVEPISDGFDEGGYA---QA 67 (216)
Q Consensus 14 GH~~P~l~--------La~~La~~G~~Vt----~it~~~~~-------~---~~~~-~~i~~~~~~~~~~~~~~~---~~ 67 (216)
|+..=.++ |+++|+++||+|+ ++|--... + .+.. .+.++..+|-|...+.+. +.
T Consensus 304 GQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~k 383 (815)
T PLN00142 304 GQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISR 383 (815)
T ss_pred CceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCH
Confidence 55555554 5578889999775 66642111 1 1111 466777777543221111 11
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCCc-cH-HHHHHHhCCCceeec
Q 042896 68 KNEDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFLP-WA-LDVAKEYGLYGAAFF 126 (216)
Q Consensus 68 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~-~~-~~vA~~lgiP~v~f~ 126 (216)
.++..++..|.. ...+.+.++. ...||+|.+-+... ++ ..+|+++|||.+...
T Consensus 384 e~l~p~L~~f~~---~~~~~~~~~~---~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 384 FDVWPYLETFAE---DAASEILAEL---QGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred HHHHHHHHHHHH---HHHHHHHHhc---CCCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 122222333322 2222332322 23589999998764 55 588999999988654
No 47
>PRK10307 putative glycosyl transferase; Provisional
Probab=94.26 E-value=0.95 Score=39.07 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCeEEEEeccc
Q 042896 19 LLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~ 40 (216)
+.+|++.|.++||+|+++|+..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999764
No 48
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.04 E-value=0.8 Score=38.45 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=30.8
Q ss_pred eEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 4 HVVLLPYPSQ-GHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 4 hv~~~p~p~~-GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
+|+++.+|.. |.-.-..+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 5666666654 788889999999999999999998754
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=93.99 E-value=1.2 Score=36.86 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=26.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
.|+-.-+..+++.|+++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 48999999999999999999999987644
No 50
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.88 E-value=1.2 Score=34.10 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=52.4
Q ss_pred hCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCC-HHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCC
Q 042896 28 SKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKN-EDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDS 106 (216)
Q Consensus 28 ~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~ 106 (216)
++||+|++++....... . ++++.+.+.. +......... ...+-..+.+ ...+.+.+.+|.+++-.||+||.-.
T Consensus 1 q~gh~v~fl~~~~~~~~-~-~GV~~~~y~~--~~~~~~~~~~~~~~~e~~~~r--g~av~~a~~~L~~~Gf~PDvI~~H~ 74 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P-PGVRVVRYRP--PRGPTPGTHPYVRDFEAAVLR--GQAVARAARQLRAQGFVPDVIIAHP 74 (171)
T ss_pred CCCCEEEEEecCCCCCC-C-CCcEEEEeCC--CCCCCCCCCcccccHHHHHHH--HHHHHHHHHHHHHcCCCCCEEEEcC
Confidence 47999999995544332 2 4777776642 1100001100 1111111211 1233344445544454689999999
Q ss_pred CCccHHHHHHHh-CCCceeec
Q 042896 107 FLPWALDVAKEY-GLYGAAFF 126 (216)
Q Consensus 107 ~~~~~~~vA~~l-giP~v~f~ 126 (216)
-++.+.-+-+-+ ++|.+.|.
T Consensus 75 GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 75 GWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CcchhhhHHHhCCCCcEEEEE
Confidence 888888888888 89988874
No 51
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=93.34 E-value=1.4 Score=31.56 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=33.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccC-CCCceEEecc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSIC-APHVGVEPIS 56 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~-~~~i~~~~~~ 56 (216)
|+++.--..+| ..++++.|.++|++|++++......... ..++.+..++
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~ 51 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLP 51 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEec
Confidence 55665544455 5688999999999999999954432222 2577777664
No 52
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=92.96 E-value=1.5 Score=37.58 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=55.3
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccccccC----CCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHH
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHYTAKSIC----APHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSEL 88 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (216)
-|.-.-..+||+.|+++||+|+++++........ ..++++..++.. + ... .....+...+.......++..
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~ 94 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAG-P---YEG-LDKEDLPTQLCAFTGGVLRAE 94 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCC-C---ccc-CCHHHHHHHHHHHHHHHHHHH
Confidence 4666789999999999999999999764321111 146666655421 1 000 011111111111011122233
Q ss_pred HHHhhcCCCCceEEEeCCC-Ccc-HHHHHHHhCCCceeecc
Q 042896 89 IKRYKNSSFPVNCVVYDSF-LPW-ALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 89 l~~~~~~~~~~d~vI~D~~-~~~-~~~vA~~lgiP~v~f~~ 127 (216)
++.. ..++|+|-+-.+ ..| +..+++.+++|.+..+-
T Consensus 95 ~~~~---~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 95 ARHE---PGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred hhcc---CCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 3221 125788865442 233 34556778999876543
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=92.51 E-value=3.1 Score=33.86 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=38.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc-cCCCCceEEecc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS-ICAPHVGVEPIS 56 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~-~~~~~i~~~~~~ 56 (216)
+|+++.....|+..-+.++++.|.++||+|+++++...... ....+++...++
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 54 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIP 54 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecc
Confidence 35666655678889999999999999999999998765432 222456666554
No 54
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=91.22 E-value=3.5 Score=29.01 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=32.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+|++.+.++-.|-..+.-++..|.++|++|.++-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 578899999999999999999999999999876543
No 55
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=91.01 E-value=0.39 Score=34.76 Aligned_cols=94 Identities=17% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccC--CCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHhhcC
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTAKSIC--APHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYKNS 95 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 95 (216)
-+.+|++.|+++||+|++++......... ..++++..++- +... ......... ..+.+++.. .
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~--------~~~~~~l~~--~- 70 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPL--PRRP--WPLRLLRFL--------RRLRRLLAA--R- 70 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE----S-SS--SGGGHCCHH--------HHHHHHCHH--C-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccC--Cccc--hhhhhHHHH--------HHHHHHHhh--h-
Confidence 36789999999999999999755443221 15677776652 2101 000000011 123333311 1
Q ss_pred CCCceEEEeCCCC-ccHHHHHH-HhCCCceeec
Q 042896 96 SFPVNCVVYDSFL-PWALDVAK-EYGLYGAAFF 126 (216)
Q Consensus 96 ~~~~d~vI~D~~~-~~~~~vA~-~lgiP~v~f~ 126 (216)
..++|+|.+-... .+...+++ ..++|.+.-.
T Consensus 71 ~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 71 RERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp T---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred ccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2368988766643 23445555 7889987643
No 56
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=90.28 E-value=3.7 Score=34.90 Aligned_cols=102 Identities=18% Similarity=0.177 Sum_probs=60.5
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccc--cccCCCCceEEeccCCCCCCCCcccCCHH-HHHHHHHHhhhHHHHHHHH
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYTA--KSICAPHVGVEPISDGFDEGGYAQAKNED-LYLKSFEDNGSRTLSELIK 90 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~ 90 (216)
-|+.-+-++.++|-++||+|.+.+-.... ..+...++.+..+... + .+.. .......+ ..++++
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~----g----~~~~~Kl~~~~~R-----~~~l~~ 77 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKH----G----DSLYGKLLESIER-----QYKLLK 77 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCC----C----CCHHHHHHHHHHH-----HHHHHH
Confidence 48888999999999999999876654322 1112256777766420 1 1111 11111111 122222
Q ss_pred HhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchh
Q 042896 91 RYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 91 ~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 131 (216)
.+.+ .+||++|+ ...+.+..+|.-+|+|.+.|.=..-+
T Consensus 78 ~~~~--~~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a 115 (335)
T PF04007_consen 78 LIKK--FKPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHA 115 (335)
T ss_pred HHHh--hCCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchh
Confidence 2221 24799996 33455677999999999999866433
No 57
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=89.70 E-value=8.1 Score=32.69 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q 042896 17 NPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.-+.+||+.|+++||+|+++|+.
T Consensus 17 ~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 17 RLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCC
Confidence 45689999999999999999975
No 58
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=88.20 E-value=3.6 Score=36.05 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCC--eEEEEecccccc--------ccC--CCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHH
Q 042896 17 NPLLQFAKRLASKGV--KATLATTHYTAK--------SIC--APHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRT 84 (216)
Q Consensus 17 ~P~l~La~~La~~G~--~Vt~it~~~~~~--------~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (216)
.-+.+||+.|+.+|| +|+++|...... ... ..+++++.++.+ +. ...........+.. ....
T Consensus 30 ~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~-~~-~~~~~~~~~~~~~~----~~~~ 103 (439)
T TIGR02472 30 KYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFG-PR-RYLRKELLWPYLDE----LADN 103 (439)
T ss_pred hHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCC-CC-CCcChhhhhhhHHH----HHHH
Confidence 457899999999997 999999532210 111 146677666531 11 00010111111111 1122
Q ss_pred HHHHHHHhhcCCCCceEEEeCCCC-ccH-HHHHHHhCCCceeec
Q 042896 85 LSELIKRYKNSSFPVNCVVYDSFL-PWA-LDVAKEYGLYGAAFF 126 (216)
Q Consensus 85 l~~~l~~~~~~~~~~d~vI~D~~~-~~~-~~vA~~lgiP~v~f~ 126 (216)
+.+.+++ ...+||+|-+-... .+. ..+++.+|+|.|...
T Consensus 104 l~~~~~~---~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 104 LLQHLRQ---QGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHHHH---cCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 3333332 11257998776532 333 356677999986643
No 59
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.59 E-value=8.7 Score=29.94 Aligned_cols=38 Identities=16% Similarity=0.020 Sum_probs=33.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+.+|++.+.++-.|-....=++..|.++|++|+++-..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 46899999999999999999999999999999887644
No 60
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.12 E-value=1.1 Score=37.01 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=26.4
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
-|+-+.+..|++.|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 58999999999999999999999998654
No 61
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.54 E-value=9.1 Score=29.81 Aligned_cols=41 Identities=12% Similarity=-0.117 Sum_probs=35.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+.+|++.+.++-.|-....=++..|.++|++|+++-..-..
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~ 124 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPI 124 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCH
Confidence 35899999999999999999999999999999998765443
No 62
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=86.00 E-value=14 Score=31.73 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=29.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccccc---cCCCCceEEecc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYTAKS---ICAPHVGVEPIS 56 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~~~~---~~~~~i~~~~~~ 56 (216)
|--.-..+|++.|+++||+|+++++...... ....+++++.+|
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p 60 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLP 60 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEec
Confidence 4456789999999999999999997532211 111456666555
No 63
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=85.86 E-value=0.99 Score=33.17 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=22.8
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
|=-.-+.+|++.|+++||+||++++....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 55577899999999999999999776444
No 64
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=84.35 E-value=10 Score=31.33 Aligned_cols=96 Identities=19% Similarity=0.092 Sum_probs=53.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccccc-cCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHh
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYTAKS-ICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRY 92 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 92 (216)
|--.-..+||+.|+++||+|++++....... ....+++++.++- .. .+....+..+ ..+...+++
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~-----~~l~~~~~~- 76 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAELEAEGSRHIKLPF--IS------KNPLRILLNV-----ARLRRLIRE- 76 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcCCeEEEccc--cc------cchhhhHHHH-----HHHHHHHHH-
Confidence 4446788999999999999999987533211 1124555554431 10 0111111111 122333332
Q ss_pred hcCCCCceEEEeCCC-CccHH-HHHHHhCCCceeecc
Q 042896 93 KNSSFPVNCVVYDSF-LPWAL-DVAKEYGLYGAAFFT 127 (216)
Q Consensus 93 ~~~~~~~d~vI~D~~-~~~~~-~vA~~lgiP~v~f~~ 127 (216)
.++|+|+.... ..|.. ..++.+++|.+..+.
T Consensus 77 ----~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 77 ----EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred ----cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 25798887653 34554 445678999886544
No 65
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.97 E-value=1.2 Score=36.76 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=32.0
Q ss_pred eEEEEcC----CCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 4 HVVLLPY----PSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 4 hv~~~p~----p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
||+++.= -|.||+.=++.||+.|.++|+.++|++.+...
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e 44 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIE 44 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchh
Confidence 4555543 36799999999999999999999999987643
No 66
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=83.79 E-value=1.7 Score=37.00 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=31.2
Q ss_pred CceEEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 2 RRHVVLLPYPSQ-GHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 2 ~~hv~~~p~p~~-GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.++|+++..-.- ||..+...|++.|.++|++|.++...
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 467888887655 99999999999999999987666543
No 67
>PLN02275 transferase, transferring glycosyl groups
Probab=83.54 E-value=27 Score=29.75 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=35.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEecccccccc---CCCCceEEecc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGV-KATLATTHYTAKSI---CAPHVGVEPIS 56 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~-~Vt~it~~~~~~~~---~~~~i~~~~~~ 56 (216)
++.++..+-.|.---|..+++.|+++|+ +||+++-....... ...+++++.++
T Consensus 6 ~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~ 62 (371)
T PLN02275 6 RAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMV 62 (371)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECC
Confidence 3444444566777788999999999885 79999865432211 11467777775
No 68
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=83.36 E-value=2.1 Score=35.29 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=27.1
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 11 PSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 11 p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
...|+-.-...+++.|+++||+|+++++...
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 3568999999999999999999999987654
No 69
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=82.92 E-value=6.8 Score=26.14 Aligned_cols=32 Identities=38% Similarity=0.389 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceE
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKSICAPHVGV 52 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~ 52 (216)
++++++.|++.|++| +.|......+...++..
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLREAGLPV 33 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHHCCCcc
Confidence 568999999999987 45555544444445544
No 70
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=80.17 E-value=2.3 Score=35.30 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=25.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
-|+-....+|++.|.++||+|++++...
T Consensus 12 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 12 GGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 4889999999999999999999998643
No 71
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.99 E-value=21 Score=26.10 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=36.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+++|++...++-+|-.-..-++..|.++|++|+++-..-..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~ 43 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQ 43 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 57899999999999999999999999999999998765443
No 72
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=79.54 E-value=3.8 Score=36.17 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.5
Q ss_pred CceEEEEcCC----Cc-cChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 2 RRHVVLLPYP----SQ-GHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 2 ~~hv~~~p~p----~~-GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+.||+++..+ .. |=-+=+.+|++.|.++||+|+++++...
T Consensus 58 ~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 58 PRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5688888432 22 3235678999999999999999997643
No 73
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=78.65 E-value=17 Score=29.61 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEEecccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~ 41 (216)
-..|++.|.++||+|+..+....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCC
Confidence 56899999999999988766544
No 74
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=78.54 E-value=27 Score=28.47 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCeEEEEecccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
+..|++.|. .+++|+++.+..+.+-.
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 456777777 89999999998776543
No 75
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.49 E-value=5.7 Score=32.96 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=30.2
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecccccccc--CCCCceEEecc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYTAKSI--CAPHVGVEPIS 56 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~--~~~~i~~~~~~ 56 (216)
|=-.-..+|++.|.++||+|++++........ ...+++++.++
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~~~~~i~~~~~~ 60 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPYPKQKETEYNGVRLIHIP 60 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCCCCCcccccCCceEEEcC
Confidence 33456789999999999999999986543221 11567777665
No 76
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=78.03 E-value=16 Score=25.28 Aligned_cols=84 Identities=26% Similarity=0.214 Sum_probs=50.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHhh
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYK 93 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 93 (216)
++-.=++++++.|.+.|+++ +.|+.....+...++....+.. .+. + .+.+.+++++
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~~gi~~~~v~~-~~~-~------------------~~~i~~~i~~-- 65 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYLQEAGIPVEVVNK-VSE-G------------------RPNIVDLIKN-- 65 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHHHHcCCeEEEEee-cCC-C------------------chhHHHHHHc--
Confidence 34456889999999999987 4555555444445555443321 000 0 1223333332
Q ss_pred cCCCCceEEEeCCC-------CccHHHHHHHhCCCcee
Q 042896 94 NSSFPVNCVVYDSF-------LPWALDVAKEYGLYGAA 124 (216)
Q Consensus 94 ~~~~~~d~vI~D~~-------~~~~~~vA~~lgiP~v~ 124 (216)
..+|+||.-.- ..+....|-++|||.+.
T Consensus 66 ---~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 66 ---GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred ---CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 35899988432 24567889999999984
No 77
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=77.13 E-value=8.3 Score=33.44 Aligned_cols=94 Identities=10% Similarity=0.082 Sum_probs=51.4
Q ss_pred EEEcCCCccChHHHHHHHHHHHhCCCe--EEEEeccc-cccccC---CCCceEEeccCCCCCCCCcccCCHHHHHHHHHH
Q 042896 6 VLLPYPSQGHINPLLQFAKRLASKGVK--ATLATTHY-TAKSIC---APHVGVEPISDGFDEGGYAQAKNEDLYLKSFED 79 (216)
Q Consensus 6 ~~~p~p~~GH~~P~l~La~~La~~G~~--Vt~it~~~-~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (216)
+-+=..+.|.++-...|+++|.+++.+ |.+.++.. ..+... ..++....+|-.. +
T Consensus 53 iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~-----------~-------- 113 (425)
T PRK05749 53 IWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDL-----------P-------- 113 (425)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCc-----------H--------
Confidence 344456679999999999999998754 33222111 111111 1234444343111 0
Q ss_pred hhhHHHHHHHHHhhcCCCCceEEEeCCCCccH--HHHHHHhCCCceeec
Q 042896 80 NGSRTLSELIKRYKNSSFPVNCVVYDSFLPWA--LDVAKEYGLYGAAFF 126 (216)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~ 126 (216)
..++.+++++ +||+++.--...|. ...+++.|+|.+...
T Consensus 114 ---~~~~~~l~~~-----~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 ---GAVRRFLRFW-----RPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred ---HHHHHHHHhh-----CCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 1334455544 36877754223343 455688999998764
No 78
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=76.89 E-value=4.4 Score=33.29 Aligned_cols=31 Identities=32% Similarity=0.388 Sum_probs=26.9
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
.-|+..-...|++.|+++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 3489999999999999999999999886543
No 79
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=76.69 E-value=19 Score=28.47 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=35.1
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+.+|++...++-.|-+-..=++..|.++|++|+++-..-.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp 127 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVP 127 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 4589999999999999999999999999999999876543
No 80
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=76.00 E-value=26 Score=28.97 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=26.2
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
.-|.-.-+..+++.|.++||+|++++.....
T Consensus 11 ~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 11 RGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 4488888999999999999999999976543
No 81
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=73.53 E-value=48 Score=27.86 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=35.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
.|.+--.||.|-=.-.-.|.+.|.++||+|.++...+..+.
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 56777788999999999999999999999999988766543
No 82
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=72.63 E-value=7.1 Score=30.23 Aligned_cols=40 Identities=23% Similarity=0.097 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCC--CCceEEecc
Q 042896 17 NPLLQFAKRLASKGVKATLATTHYTAKSICA--PHVGVEPIS 56 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~~~~~~~~~--~~i~~~~~~ 56 (216)
.-.-+|+.+|+++|++||+.+.......... .+++...+|
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 4456899999999999999988665533222 678887776
No 83
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=72.40 E-value=26 Score=30.60 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=32.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hCCCeEEEEecccccc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLA-SKGVKATLATTHYTAK 43 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La-~~G~~Vt~it~~~~~~ 43 (216)
+++..-|+.|=-.-.+++|..++ .+|..|-|++.+-...
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~ 236 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAE 236 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHH
Confidence 56777889999999999999998 6799999998775443
No 84
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=71.35 E-value=7.4 Score=32.26 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=30.6
Q ss_pred eEEEEcCC-C-ccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 4 HVVLLPYP-S-QGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 4 hv~~~p~p-~-~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+|+++... + .|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56666544 3 48889999999999999999999997654
No 85
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.58 E-value=11 Score=26.29 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=32.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
++++...+...|-.-+.-++..|.++||+|.++-..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 688899999999999999999999999999988443
No 86
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=70.50 E-value=7.9 Score=31.97 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=26.5
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
.-|.-.-..+|++.|.++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4478888999999999999999999986543
No 87
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=69.86 E-value=9.6 Score=31.22 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=23.6
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
|--.-..+|++.|.++||+|++++....
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~~ 47 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGDS 47 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCCC
Confidence 4456789999999999999999997643
No 88
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=69.73 E-value=7.8 Score=29.38 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=24.4
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEe
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it 37 (216)
.-|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 55999999999999999999999998
No 89
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=69.52 E-value=62 Score=26.61 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
+..|++.|...| +|+++.+....+-
T Consensus 16 i~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 16 LRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred HHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 678899998888 7999888766543
No 90
>PRK00654 glgA glycogen synthase; Provisional
Probab=68.65 E-value=8.5 Score=34.03 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=22.2
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
|.-.-.-.|++.|+++||+|+++++.
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 44456789999999999999999975
No 91
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=68.41 E-value=25 Score=24.52 Aligned_cols=84 Identities=21% Similarity=0.152 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHhhcCC
Q 042896 17 NPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYKNSS 96 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 96 (216)
-=+.++++.|.+.|++| ++|......+...++....+.. ..+ .... + .+.+.+++++
T Consensus 13 ~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~gi~~~~v~~-~~~--~~~~-~------------~~~i~~~i~~----- 69 (116)
T cd01423 13 PELLPTAQKLSKLGYKL--YATEGTADFLLENGIPVTPVAW-PSE--EPQN-D------------KPSLRELLAE----- 69 (116)
T ss_pred hhHHHHHHHHHHCCCEE--EEccHHHHHHHHcCCCceEeee-ccC--CCCC-C------------chhHHHHHHc-----
Confidence 34789999999999887 4555555444334444433321 110 0000 0 0223334432
Q ss_pred CCceEEEeCCC---------CccHHHHHHHhCCCce
Q 042896 97 FPVNCVVYDSF---------LPWALDVAKEYGLYGA 123 (216)
Q Consensus 97 ~~~d~vI~D~~---------~~~~~~vA~~lgiP~v 123 (216)
..+|+||.-.- ..+....|-++|||++
T Consensus 70 ~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 70 GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred CCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 35888888432 2456688999999996
No 92
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=68.31 E-value=65 Score=26.35 Aligned_cols=40 Identities=13% Similarity=0.248 Sum_probs=26.6
Q ss_pred CceEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeccccccc
Q 042896 2 RRHVVLLPYPSQGHINP-LLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P-~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
+.||++.- --|--.| +..|++.|.+.| +|+++.+....+-
T Consensus 5 ~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 5 KPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 44666554 2343334 678888888888 7998888766553
No 93
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=68.07 E-value=63 Score=26.14 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCeEEEEecccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
+..|++.|.+.| +|+++.+....+-.
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 677889998888 89999887766543
No 94
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=67.76 E-value=69 Score=27.86 Aligned_cols=101 Identities=9% Similarity=-0.010 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhC--CCeEEEEeccccccc----------cCC---CCceEEecc---CCCCCCCCcccCCHHHHHHHHH
Q 042896 17 NPLLQFAKRLASK--GVKATLATTHYTAKS----------ICA---PHVGVEPIS---DGFDEGGYAQAKNEDLYLKSFE 78 (216)
Q Consensus 17 ~P~l~La~~La~~--G~~Vt~it~~~~~~~----------~~~---~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (216)
--+++.++.|.++ ||+|+++|+...... ..- .++.++.+. ..++...........++ +.
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~ 94 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTLLGQA---LG 94 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceeeHHHH---HH
Confidence 3567888888887 899999998755432 110 344544331 11222111111111111 11
Q ss_pred HhhhHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHH-hCCCceeecc
Q 042896 79 DNGSRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKE-YGLYGAAFFT 127 (216)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~-lgiP~v~f~~ 127 (216)
. +-..++.+.+ ..||++|.+.-++++..+++. .++|.+.+.-
T Consensus 95 ~-----~~~~~~~~~~--~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h 137 (419)
T cd03806 95 S-----MILGLEALLK--LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVH 137 (419)
T ss_pred H-----HHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHhcCCeEEEEec
Confidence 1 1111222211 147999998877777777765 4788777644
No 95
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=67.62 E-value=68 Score=26.30 Aligned_cols=27 Identities=4% Similarity=0.003 Sum_probs=18.5
Q ss_pred HHHHHHHHHhC---CCeEEEEecccccccc
Q 042896 19 LLQFAKRLASK---GVKATLATTHYTAKSI 45 (216)
Q Consensus 19 ~l~La~~La~~---G~~Vt~it~~~~~~~~ 45 (216)
+..|++.|.+. |++|+++.+....+-.
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ 45 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGV 45 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCC
Confidence 45677777663 3699999887666543
No 96
>PRK08506 replicative DNA helicase; Provisional
Probab=67.60 E-value=32 Score=30.72 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=33.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
+++-.-|+.|=-.-.+++|...+.+|..|.|++.+-...
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ 233 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAE 233 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHH
Confidence 667788899999999999999998999999998775443
No 97
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=66.77 E-value=10 Score=31.40 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhcCCCCceEEEeCCCCcc-----HHHHHHHhCCCceeecccc
Q 042896 83 RTLSELIKRYKNSSFPVNCVVYDSFLPW-----ALDVAKEYGLYGAAFFTNS 129 (216)
Q Consensus 83 ~~l~~~l~~~~~~~~~~d~vI~D~~~~~-----~~~vA~~lgiP~v~f~~~~ 129 (216)
+.++++++++.++.+++-+||.|.|..- ..+.|.+.+||+|++--..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 4566666664333346789999999852 3467779999999886543
No 98
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=66.31 E-value=6 Score=31.62 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 15 HINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 15 H~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
|+..|.+.|..|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67899999999999999999998764
No 99
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=65.88 E-value=12 Score=26.72 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=29.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
||++.-..+ ++..-..++.++|.++|++|.++.|+...+.
T Consensus 2 ~i~l~vtGs-~~~~~~~~~l~~L~~~g~~v~vv~S~~A~~~ 41 (129)
T PF02441_consen 2 RILLGVTGS-IAAYKAPDLLRRLKRAGWEVRVVLSPSAERF 41 (129)
T ss_dssp EEEEEE-SS-GGGGGHHHHHHHHHTTTSEEEEEESHHHHHH
T ss_pred EEEEEEECH-HHHHHHHHHHHHHhhCCCEEEEEECCcHHHH
Confidence 555555444 4444499999999999999999998865543
No 100
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=64.71 E-value=13 Score=30.13 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.6
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
-|+-.-+..|++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 588999999999999999999999986543
No 101
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=64.48 E-value=13 Score=29.97 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=26.9
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
.-|+-.-+.+|++.|.++||+|++++.....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 5588889999999999999999999886543
No 102
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=64.13 E-value=14 Score=29.85 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=25.0
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
-|.-.-+..|++.|+++||+|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 355677889999999999999999986554
No 103
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=62.77 E-value=83 Score=25.60 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
+..|++.|.+. ++|+++.+....+-
T Consensus 16 i~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 16 IRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 67788889887 68999988766553
No 104
>PLN02846 digalactosyldiacylglycerol synthase
Probab=62.74 E-value=13 Score=33.11 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=29.3
Q ss_pred CceEEEEcCC---Cc-cChHHHHHHHHHHHhCC-CeEEEEeccc
Q 042896 2 RRHVVLLPYP---SQ-GHINPLLQFAKRLASKG-VKATLATTHY 40 (216)
Q Consensus 2 ~~hv~~~p~p---~~-GH~~P~l~La~~La~~G-~~Vt~it~~~ 40 (216)
+.||++++-. -. |=..-.+.++..|+++| |+|+++.+..
T Consensus 4 ~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 4 KQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 5788888643 33 65466677778999999 8999998753
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=61.42 E-value=7.3 Score=34.25 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q 042896 17 NPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.-.-.|+++|+++||+|+++++.
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecC
Confidence 45678999999999999999974
No 106
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=61.23 E-value=57 Score=28.30 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHh--CCCeEE---EEeccccccc--cCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHH-hhhHHH--H
Q 042896 17 NPLLQFAKRLAS--KGVKAT---LATTHYTAKS--ICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFED-NGSRTL--S 86 (216)
Q Consensus 17 ~P~l~La~~La~--~G~~Vt---~it~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l--~ 86 (216)
.--+.++++|.+ .|++|. ++.+..-.+. ++..+ .+..+ |.+|+.. .+....+..+.+ ...... .
T Consensus 11 ~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~----~sgg~~~-~~~~~~~~~~~~gl~~~~~~~~ 84 (396)
T TIGR03492 11 LIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKEL----PSGGFSY-QSLRGLLRDLRAGLVGLTLGQW 84 (396)
T ss_pred HHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCC----CCCCccC-CCHHHHHHHHHhhHHHHHHHHH
Confidence 456789999988 699999 8877644321 11112 33333 3333321 122222221111 111111 2
Q ss_pred HHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceee
Q 042896 87 ELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAF 125 (216)
Q Consensus 87 ~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 125 (216)
.+++++. .++|+||.=.=+. ....|...|+|.+.+
T Consensus 85 ~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~ 119 (396)
T TIGR03492 85 RALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFV 119 (396)
T ss_pred HHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEE
Confidence 2334432 1457665433222 667788899999984
No 107
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=60.99 E-value=8 Score=31.14 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q 042896 17 NPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.-.-.|+++|+++||+|+++++.
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHhcCCeEEEEEcc
Confidence 55678999999999999999985
No 108
>PRK10867 signal recognition particle protein; Provisional
Probab=60.56 E-value=52 Score=29.08 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=34.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEecccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASK-GVKATLATTHYTAK 43 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~-G~~Vt~it~~~~~~ 43 (216)
-|+++-.+|.|=..-...||..|+.+ |.+|.+++.....+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 36677778889999999999999998 99999999876543
No 109
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=60.35 E-value=17 Score=26.86 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 042896 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 1 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~ 38 (216)
++++|++.+...-||=.=.--+++.|++.|++|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 37899999988779999999999999999999887544
No 110
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=60.23 E-value=93 Score=25.37 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
+..|++.|.+ +++|+++.+....+-
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 6778888865 679999988766553
No 111
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=60.12 E-value=12 Score=30.32 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=35.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
..++++--||.|=-.=...+|..|..+|++|+|++++.....+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 3578888888877777899999999889999999987665443
No 112
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=59.95 E-value=26 Score=27.41 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcC--CCCceEEEeCCCCccHHHHHHHhCCCceeecccc
Q 042896 84 TLSELIKRYKNS--SFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 129 (216)
Q Consensus 84 ~l~~~l~~~~~~--~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 129 (216)
.++.++++.... ...+.+||+|----.+.+-|++.|||.+++..-.
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 456666665321 1247899999988889999999999998886543
No 113
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=57.82 E-value=12 Score=28.94 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCeEEEEeccc
Q 042896 20 LQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~~ 40 (216)
..||+.+..+|++||+++.+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 578999999999999999884
No 114
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=57.49 E-value=1e+02 Score=25.09 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
+..|++.|.+ +++|+++.+....+-
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 5678888865 579999988766553
No 115
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=57.35 E-value=29 Score=22.58 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=26.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLA 36 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~i 36 (216)
-++++.-....|..=+-++|+.|+++|+.|...
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456666666689999999999999999987754
No 116
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.60 E-value=68 Score=22.62 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=33.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
||++...++-.|-.-..-++..|..+|++|.+......
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 58899999999999999999999999999999876533
No 117
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.41 E-value=21 Score=27.10 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccchh
Q 042896 82 SRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~a~ 131 (216)
.+.++..++++..+ ++|+||.+.. +...|+++|+|.+.+.++--+
T Consensus 111 ~~e~~~~i~~~~~~--G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 111 EEEIEAAIKQAKAE--GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHHHT--T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHHHc--CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 35667777776543 5899999984 579999999999888775433
No 118
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.54 E-value=14 Score=32.16 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=22.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
||+.|++.| ++|.+.||+|+++....
T Consensus 49 Ghlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 49 GHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred hhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 999999887 56888999999988653
No 119
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=54.43 E-value=17 Score=28.41 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=28.6
Q ss_pred eEEEEcCCCccChHH-HHHHHHHHHhCCCeEEEEeccccc
Q 042896 4 HVVLLPYPSQGHINP-LLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 4 hv~~~p~p~~GH~~P-~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+|++ ...|.+...- ..+|.++|.++|++|.++.|+...
T Consensus 7 ~Ill-gVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 7 RIGF-GLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred EEEE-EEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 4443 3445556666 699999999999999999987654
No 120
>PRK11519 tyrosine kinase; Provisional
Probab=54.01 E-value=1.5e+02 Score=27.96 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=30.8
Q ss_pred ceEEEEcC--CCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLPY--PSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p~--p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
.+++++.. |+.|=-.-...||..|+..|.+|-++-...
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 45666665 567888889999999999999999986653
No 121
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=53.77 E-value=46 Score=27.84 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=21.6
Q ss_pred CccChHHHHHHHHHHHhC-CCeEEEEecccc
Q 042896 12 SQGHINPLLQFAKRLASK-GVKATLATTHYT 41 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~-G~~Vt~it~~~~ 41 (216)
...-+.=+..|.++|.++ |+++.++.|...
T Consensus 8 tr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h 38 (363)
T cd03786 8 TRPEYIKLAPLIRALKKDPGFELVLVVTGQH 38 (363)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 345556667778888886 999998777533
No 122
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=53.57 E-value=22 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCeEEEEecccc
Q 042896 18 PLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
.-+++|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 457999999999999999976543
No 123
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=52.08 E-value=15 Score=32.48 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 16 INPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 16 ~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
-.-+-.|+++|+++||+|.++++..
T Consensus 20 ~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 20 ADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3556899999999999999999743
No 124
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=51.20 E-value=34 Score=28.08 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 15 HINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 15 H~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
--.-+.++++.|.++||+|++++....
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 445689999999999999999987543
No 125
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=51.12 E-value=18 Score=28.19 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCeEEEEecccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
+..|++.|.+.||+|+++.+..+.+-.
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 678999997788999999998776543
No 126
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=50.79 E-value=26 Score=28.47 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.1
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 3688888999999999999999999986554
No 127
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=49.77 E-value=35 Score=27.70 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=32.1
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEecccccccc---CCCCceEEecc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTAKSI---CAPHVGVEPIS 56 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~---~~~~i~~~~~~ 56 (216)
.-|+-..+.+|++.|.+.|++|.+++........ ...++.+..++
T Consensus 11 ~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~ 58 (365)
T cd03807 11 VGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLG 58 (365)
T ss_pred CccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEe
Confidence 3589999999999999999999999875433211 11456665543
No 128
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=48.58 E-value=79 Score=28.00 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.5
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEE
Q 042896 8 LPYPSQGHINPLLQFAKRLASKGVKAT 34 (216)
Q Consensus 8 ~p~p~~GH~~P~l~La~~La~~G~~Vt 34 (216)
-|-.+.|-..-.+.|.+.|.+||++|-
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 345567888999999999999999875
No 129
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=48.44 E-value=93 Score=24.06 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=22.4
Q ss_pred CceE-EEeCCCC-ccHHHHHHHhCCCceeeccc
Q 042896 98 PVNC-VVYDSFL-PWALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 98 ~~d~-vI~D~~~-~~~~~vA~~lgiP~v~f~~~ 128 (216)
.||+ ||.|... ..+..-|.++|||.+.+.-+
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 4675 5667654 35667899999999998544
No 130
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.11 E-value=41 Score=22.06 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.4
Q ss_pred ceEEEEcCCCc--cChHHHHHHHHHHHhCCCeEEEEe
Q 042896 3 RHVVLLPYPSQ--GHINPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 3 ~hv~~~p~p~~--GH~~P~l~La~~La~~G~~Vt~it 37 (216)
.+|+++|.... .+..-.+.++..|.+.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46889997653 466678899999999999998744
No 131
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=47.82 E-value=1.3e+02 Score=23.13 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=41.7
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPIS 56 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~ 56 (216)
..+|.+---||.|--.-...++..|.++|++|-=+.++....--...+++++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 3578888899999999999999999999999886666654321111467777665
No 132
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.70 E-value=36 Score=24.73 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=28.7
Q ss_pred EEEEcCCCc-cChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 5 VVLLPYPSQ-GHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 5 v~~~p~p~~-GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
+|++-.|-. --+...+-++.+|-.+|++||+..++...+
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~k 45 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALK 45 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhhe
Confidence 455556644 344557889999999999999998875543
No 133
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=47.42 E-value=1.4e+02 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=28.0
Q ss_pred EcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 8 LPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 8 ~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
......|--.-+++-+++...+|-.|.+.++....
T Consensus 10 ~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~ 44 (201)
T COG1435 10 YGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDT 44 (201)
T ss_pred EccCcCcchHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 33345588889999999999999999998876543
No 134
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=46.70 E-value=1.2e+02 Score=25.11 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
+.+++.|+++|++|..+-.+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHCCCEEEEEecc
Confidence 67999999999999998765
No 135
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=46.23 E-value=29 Score=27.24 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCc
Q 042896 83 RTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYG 122 (216)
Q Consensus 83 ~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~ 122 (216)
+.++++++.+.+.+.. -.+|+..|-..+..||.+||||.
T Consensus 91 ~Gi~eLv~~L~~~~~~-v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQ-VYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCHHHHHHHHHHcCCe-EEEEcCChHHHHHHHHHHhCCcH
Confidence 4567777777554332 26788888888999999999998
No 136
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=46.18 E-value=28 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
+..|..|+++|++|+++=..
T Consensus 9 l~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCcEEEEecC
Confidence 56788999999999998543
No 137
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=45.38 E-value=71 Score=25.26 Aligned_cols=20 Identities=20% Similarity=0.021 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCeEEEEec
Q 042896 19 LLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~ 38 (216)
=.++|++|+++|++|..+..
T Consensus 23 G~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 23 GQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred HHHHHHHHHHCCCEEEEecC
Confidence 46789999999999986643
No 138
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=44.02 E-value=41 Score=29.82 Aligned_cols=36 Identities=17% Similarity=0.466 Sum_probs=28.9
Q ss_pred ceEEEEcCCCccCh-----HHHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLPYPSQGHI-----NPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p~p~~GH~-----~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
.+|+++| +.|=- ....+|++.|.+||.+|.|...|-
T Consensus 307 ~~ViIVP--GYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 307 HSVIITP--GYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CcEEEEC--ChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4788887 55433 678999999999999999987763
No 139
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.59 E-value=90 Score=25.32 Aligned_cols=46 Identities=24% Similarity=0.146 Sum_probs=32.0
Q ss_pred HHHHHHHHhhcCCCCceEEEeCCCCc--cHHHHHHHhCCCceeecccchh
Q 042896 84 TLSELIKRYKNSSFPVNCVVYDSFLP--WALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 84 ~l~~~l~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~ 131 (216)
.+.++.+.+.+ .++.||+++.... .+..+|++.|++.+.+.+.+..
T Consensus 205 ~l~~l~~~ik~--~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~ 252 (266)
T cd01018 205 DLKRLIDLAKE--KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAAD 252 (266)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHH
Confidence 44555554433 3578999998764 3568999999999888766533
No 140
>PLN02891 IMP cyclohydrolase
Probab=42.99 E-value=63 Score=29.34 Aligned_cols=42 Identities=29% Similarity=0.348 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccC--CCCC
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISD--GFDE 61 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~--~~~~ 61 (216)
=+.+||+.|++.|++ +++|......+...+|.+..+.+ |+|+
T Consensus 34 gi~~fAk~L~~~gve--IiSTgGTak~L~e~Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 34 DLALLANGLQELGYT--IVSTGGTASALEAAGVSVTKVEELTNFPE 77 (547)
T ss_pred CHHHHHHHHHHCCCE--EEEcchHHHHHHHcCCceeeHHhccCCch
Confidence 368999999999865 67777776666656777777654 4554
No 141
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=42.92 E-value=24 Score=30.50 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=20.8
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
||+.|++.+ ++|.+.||++.++...
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~iligd 71 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLGD 71 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEec
Confidence 999997665 6888999999988754
No 142
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=42.36 E-value=47 Score=27.48 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=42.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce-EEecc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSICA-PHVG-VEPIS 56 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~--G~~Vt~it~~~~~~~~~~-~~i~-~~~~~ 56 (216)
+|+++-+.+-|-+.-...+.+.|.++ +.+||+++.+.+...++. +.|+ +..++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEec
Confidence 58888888889999999999999996 899999999877665544 5564 44443
No 143
>PRK09620 hypothetical protein; Provisional
Probab=42.20 E-value=27 Score=27.93 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
.+||+.|..+|++|+++...
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 68999999999999999754
No 144
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=41.87 E-value=44 Score=27.33 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=23.8
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
|--.-...|++.|+++||.|++++....
T Consensus 14 G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 14 GIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred cHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 6667789999999999999999987544
No 145
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=41.61 E-value=3.8 Score=22.34 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=14.5
Q ss_pred cCCCccChHHHHHHHHHHHhCC
Q 042896 9 PYPSQGHINPLLQFAKRLASKG 30 (216)
Q Consensus 9 p~p~~GH~~P~l~La~~La~~G 30 (216)
.||+||-+||-+++---|-..|
T Consensus 17 TFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 17 TFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred cCCCCCCCCccccccccCCCCC
Confidence 5788999888776554444333
No 146
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=41.49 E-value=51 Score=28.16 Aligned_cols=32 Identities=13% Similarity=-0.140 Sum_probs=20.8
Q ss_pred CceEE-EeCCC--CccHHHHHHHh--CCCceeecccc
Q 042896 98 PVNCV-VYDSF--LPWALDVAKEY--GLYGAAFFTNS 129 (216)
Q Consensus 98 ~~d~v-I~D~~--~~~~~~vA~~l--giP~v~f~~~~ 129 (216)
+|||+ ..|+- ......-+++. |||.+.|.+-.
T Consensus 76 ~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pq 112 (347)
T PRK14089 76 QADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQ 112 (347)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 56765 55863 33455666777 79988876544
No 147
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=41.19 E-value=41 Score=26.04 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=26.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+|++-=..+.|=+.-.+++.++|.+.|++|+++.|+...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 343333333343434459999999999999999887543
No 148
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.45 E-value=89 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.+++. .+.|.+- ..++++|+++|++|.++...
T Consensus 17 ~vlIt-Gas~gIG--~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 17 VAIVT-GGNTGLG--QGYAVALAKAGADIIITTHG 48 (258)
T ss_pred EEEEe-CCCchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 34444 2344443 78999999999999887654
No 149
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=40.17 E-value=21 Score=26.20 Aligned_cols=18 Identities=39% Similarity=0.761 Sum_probs=15.7
Q ss_pred CCccChHHHHHHHHHHHh
Q 042896 11 PSQGHINPLLQFAKRLAS 28 (216)
Q Consensus 11 p~~GH~~P~l~La~~La~ 28 (216)
|-+|-.||+++|+-.|+=
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 567999999999999974
No 150
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=40.09 E-value=31 Score=27.48 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
.+||+.|+++|++|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57899999999999998743
No 151
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=40.03 E-value=76 Score=22.61 Aligned_cols=25 Identities=4% Similarity=-0.004 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccc
Q 042896 17 NPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
...+.|+++-.+|||+|.++.....
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 4577889999999999999987644
No 152
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=39.56 E-value=1.8e+02 Score=24.46 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCCCceEEEeCCCCc--cHHHHHHHhCCCceeecccchh
Q 042896 83 RTLSELIKRYKNSSFPVNCVVYDSFLP--WALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 83 ~~l~~~l~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~~~a~ 131 (216)
+.-++.++++.+. ++|.+||++-+.. +...+|++.++|.+...-.+..
T Consensus 69 e~~~~~~~~~~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 69 EEQKQIIHNLLTL-NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 3445556665543 3567888887764 4579999999999876655543
No 153
>PTZ00445 p36-lilke protein; Provisional
Probab=39.05 E-value=36 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.5
Q ss_pred cChHH-HHHHHHHHHhCCCeEEEEecccc
Q 042896 14 GHINP-LLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 14 GH~~P-~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+|..| +..|.++|.++|+.|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56777 88999999999999999986544
No 154
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=38.81 E-value=80 Score=24.10 Aligned_cols=29 Identities=28% Similarity=0.074 Sum_probs=20.2
Q ss_pred CceEEEeCCCCcc-------HHHHHHHhCCCceeecc
Q 042896 98 PVNCVVYDSFLPW-------ALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 98 ~~d~vI~D~~~~~-------~~~vA~~lgiP~v~f~~ 127 (216)
+| +||...-..+ ...+|+++|+|.+.-..
T Consensus 36 rP-lIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 36 RP-LLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred Cc-EEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 45 6666654444 56889999999987543
No 155
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=38.71 E-value=90 Score=28.21 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPIS 56 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~ 56 (216)
=+.+|++.|.+.|++| +.|......+...+|.+..+.
T Consensus 12 ~iv~lAk~L~~lGfeI--iATgGTak~L~e~GI~v~~Vs 48 (511)
T TIGR00355 12 GIVEFAQGLVERGVEL--LSTGGTAKLLAEAGVPVTEVS 48 (511)
T ss_pred cHHHHHHHHHHCCCEE--EEechHHHHHHHCCCeEEEee
Confidence 3678999999999987 466666666655677666554
No 156
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.63 E-value=1.7e+02 Score=22.02 Aligned_cols=87 Identities=13% Similarity=0.196 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCCeEEEEeccccc-cc----cCC--CCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Q 042896 19 LLQFAKRLASKGVKATLATTHYTA-KS----ICA--PHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKR 91 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~-~~----~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 91 (216)
+..|.+...++|.+|.++-..... .. +.. ++++++-..++. + + ....+++++.
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~----f----~------------~~~~~~i~~~ 96 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGY----F----D------------EEEEEAIINR 96 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCC----C----C------------hhhHHHHHHH
Confidence 455666666788888888775432 11 112 677776443221 1 0 1123344455
Q ss_pred hhcCCCCceEEEeCCCCc----cHHHHHHHhCCCceeeccc
Q 042896 92 YKNSSFPVNCVVYDSFLP----WALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 92 ~~~~~~~~d~vI~D~~~~----~~~~vA~~lgiP~v~f~~~ 128 (216)
+.++ ++|+|+.-+-.+ |.....++++.+ +.+...
T Consensus 97 I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG 134 (172)
T PF03808_consen 97 INAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVG 134 (172)
T ss_pred HHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEEC
Confidence 5433 479999999887 788888888888 444333
No 157
>PRK07773 replicative DNA helicase; Validated
Probab=38.39 E-value=2.2e+02 Score=27.74 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=32.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeccccccc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASK-GVKATLATTHYTAKS 44 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~-G~~Vt~it~~~~~~~ 44 (216)
+++-.-|+.|=-.-.+++|...+.+ |..|.|++.+-...+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 6777788999999999999999864 889999987654443
No 158
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=38.11 E-value=88 Score=23.33 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCCCCceEEEeCCCCccHH--H-HH--HHh-CCCceeeccc
Q 042896 83 RTLSELIKRYKNSSFPVNCVVYDSFLPWAL--D-VA--KEY-GLYGAAFFTN 128 (216)
Q Consensus 83 ~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~--~-vA--~~l-giP~v~f~~~ 128 (216)
..+.+++++ .+||+||+-..+.... . +- ..+ ++|.+.+.|=
T Consensus 79 ~~l~~~l~~-----~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 79 RRLIRLLRE-----FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHhh-----cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 345555543 2589999998764322 1 21 224 5787766654
No 159
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=38.07 E-value=76 Score=20.43 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=27.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it 37 (216)
.+|++++. ..++..-.+.+++.|.+.|++|.+-.
T Consensus 2 ~~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 2 VQVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred eEEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 35677775 46788889999999999999988744
No 160
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=37.92 E-value=2e+02 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.000 Sum_probs=18.7
Q ss_pred CceEEEeCCC-C-ccHHHHHHHhCCCceee
Q 042896 98 PVNCVVYDSF-L-PWALDVAKEYGLYGAAF 125 (216)
Q Consensus 98 ~~d~vI~D~~-~-~~~~~vA~~lgiP~v~f 125 (216)
++|+|..-.. . .++..+++++|+|.+..
T Consensus 82 ~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 82 RPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred CCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 4788776432 2 23456788999998873
No 161
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.86 E-value=50 Score=25.35 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=29.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
+|++.-..+. -..-..++.+.|.++|++|.++.|+...+.+
T Consensus 3 ~Ill~vtGsi-aa~~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 3 NILLAVSGSI-AAYKAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred EEEEEEeChH-HHHHHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 4555443333 3445899999999999999999988655443
No 162
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=37.81 E-value=47 Score=29.59 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=27.2
Q ss_pred ceEEEEcCCCccC-----hHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLPYPSQGH-----INPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p~p~~GH-----~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
.+|+++| +.|= -.+..+|++.|.++|.+|.|...|-
T Consensus 308 ~~VvIVP--GYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 348 (463)
T PF02233_consen 308 KKVVIVP--GYGMAVAQAQHAVAELADLLEERGVEVKFAIHPV 348 (463)
T ss_dssp SEEEEEE--SHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CceEEec--CchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 4788888 4442 3689999999999999999987763
No 163
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=37.81 E-value=94 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.019 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCeEEEEec
Q 042896 19 LLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~ 38 (216)
=..+|++|+++|++|.++..
T Consensus 21 G~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 21 GQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred HHHHHHHHHHCCCEEEEecC
Confidence 46889999999999987643
No 164
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=37.63 E-value=1.3e+02 Score=27.85 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCCceEEE-eCCC--CccHHHHHHHhCC--Cceeecccc
Q 042896 84 TLSELIKRYKNSSFPVNCVV-YDSF--LPWALDVAKEYGL--YGAAFFTNS 129 (216)
Q Consensus 84 ~l~~~l~~~~~~~~~~d~vI-~D~~--~~~~~~vA~~lgi--P~v~f~~~~ 129 (216)
.++++.+.+.+ .+|||+| .|.- ......-+++.|+ |.+.|.+-.
T Consensus 298 ~~~~l~~~i~~--~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq 346 (608)
T PRK01021 298 RYRKLYKTILK--TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS 346 (608)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 44455555543 2578765 4863 3345677788896 877765543
No 165
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.57 E-value=44 Score=26.76 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~ 38 (216)
=|++--+|+.|-..-.-+|||.|.++++.|..++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 36777899999999999999999999998876544
No 166
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=37.37 E-value=2.1e+02 Score=22.76 Aligned_cols=107 Identities=16% Similarity=0.234 Sum_probs=62.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHH--HHHHHHHh
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDL--YLKSFEDN 80 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 80 (216)
.=|+||-.||.|=-.=.-.|++.|--.|++.-+++.....+..... + .+. .+....+... ....+
T Consensus 13 l~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~-------~--~~~-~ff~p~n~~~~~~R~~~--- 79 (222)
T PF01591_consen 13 LVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGA-------P--QDA-EFFDPDNEEAKKLREQI--- 79 (222)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS----------S-G-GGGSTT-HHHHHHHHHH---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccccc-------c--ccc-ccCCCCChHHHHHHHHH---
Confidence 3589999999999988999999999999999999876554433211 0 000 1111122221 11112
Q ss_pred hhHHHHHHHHHhhcCCCCceEEEeCCCCc------cHHHHHHHhCCCcee
Q 042896 81 GSRTLSELIKRYKNSSFPVNCVVYDSFLP------WALDVAKEYGLYGAA 124 (216)
Q Consensus 81 ~~~~l~~~l~~~~~~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~ 124 (216)
....++++++-+.+++ -++-|+|.... |..+..++.|+..+.
T Consensus 80 a~~~l~dl~~~l~~~~--G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlF 127 (222)
T PF01591_consen 80 AKEALEDLIEWLQEEG--GQVAIFDATNSTRERRKMLVERFKEHGIKVLF 127 (222)
T ss_dssp HHHHHHHHHHHHHTS----SEEEEES---SHHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHhcCC--CeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 2356777777665332 27899999775 566777788865443
No 167
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=37.30 E-value=94 Score=21.80 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=32.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
||++..-++.|=-.....|++.|+++|.+|-++-+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888888999999999999999999999888775
No 168
>PRK04940 hypothetical protein; Provisional
Probab=37.23 E-value=85 Score=24.19 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=25.6
Q ss_pred eEEEeCCCC-ccHHHHHHHhCCCceeecccchh
Q 042896 100 NCVVYDSFL-PWALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 100 d~vI~D~~~-~~~~~vA~~lgiP~v~f~~~~a~ 131 (216)
.+||--.+- .||.-+|+++|+|.|.+.+.--.
T Consensus 62 ~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 62 PLICGVGLGGYWAERIGFLCGIRQVIFNPNLFP 94 (180)
T ss_pred cEEEEeChHHHHHHHHHHHHCCCEEEECCCCCh
Confidence 566666655 58999999999999999887543
No 169
>PRK08226 short chain dehydrogenase; Provisional
Probab=37.07 E-value=99 Score=24.45 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
..++++|+++|++|.++...
T Consensus 20 ~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 20 EGIARVFARHGANLILLDIS 39 (263)
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 56899999999998877543
No 170
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.02 E-value=40 Score=24.07 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEE
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVE 53 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~ 53 (216)
-.+..|++|+.+|++|+..-.... ..+ .+++++
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~~~--~a~-~g~~~v 56 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDINEK--TAP-EGLRFV 56 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecccc--cCc-ccceEE
Confidence 357899999999998876543322 222 456665
No 171
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=36.96 E-value=76 Score=22.03 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.0
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 10 YPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 10 ~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+-..|+-..+.+..+.+.++|..|..+|.....
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 336789999999999999999999888866544
No 172
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=36.57 E-value=36 Score=26.56 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=23.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+|.++. +.|+.- -++.+....|||+||-++-...
T Consensus 2 KIaiIg--AsG~~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 2 KIAIIG--ASGKAG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred eEEEEe--cCchhH--HHHHHHHHhCCCeeEEEEeChH
Confidence 455555 344432 3578888999999999876543
No 173
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=36.55 E-value=31 Score=29.51 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=26.9
Q ss_pred EcCCCc-cChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 8 LPYPSQ-GHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 8 ~p~p~~-GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
+|+|.. |.-+=+.++.+.|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 577765 8999999999999775 8999998754
No 174
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=35.99 E-value=37 Score=24.38 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCCCceEEEeCCCCc--cHHHHHHHhCCCceeecc
Q 042896 84 TLSELIKRYKNSSFPVNCVVYDSFLP--WALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 84 ~l~~~l~~~~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~~ 127 (216)
.-++.++++.+. ++|.+||++-+.+ +..++|++.|+|.....-
T Consensus 69 ~r~~~l~~l~~~-~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 69 ERKERLEKLFSY-NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHCCHHHHHCTT-T-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 334455555443 4677889998863 567999999999876543
No 175
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=35.91 E-value=43 Score=25.59 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEecccccccc
Q 042896 11 PSQGHINPLLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 11 p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
.|.+...-..+|.+.|.++|++|.++.|+...+.+
T Consensus 8 tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 8 TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 34555667779999999999999999988655443
No 176
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=35.82 E-value=25 Score=28.60 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCeEEEEeccc
Q 042896 21 QFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 21 ~La~~La~~G~~Vt~it~~~ 40 (216)
-+|..|++.||+||++.-..
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~ 24 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGE 24 (293)
T ss_pred HHHHHHHhCCCcEEEEecHH
Confidence 37889999999999998753
No 177
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=35.81 E-value=1.8e+02 Score=22.71 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCeEEEEecc
Q 042896 19 LLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~ 39 (216)
=..++++|+++|++|+.+...
T Consensus 21 G~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 21 GYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred HHHHHHHHHHCCCEEEEEecc
Confidence 467899999999999887654
No 178
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=35.71 E-value=47 Score=25.02 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=23.2
Q ss_pred CceEEEEcCCCccChH-HHHHHHHHHHhCCCeEEEEec
Q 042896 2 RRHVVLLPYPSQGHIN-PLLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~-P~l~La~~La~~G~~Vt~it~ 38 (216)
.++|+++.- .|+-- =-+-+||.|+++|++|+++..
T Consensus 25 ~~~v~il~G--~GnNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 25 GPRVLILCG--PGNNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp T-EEEEEE---SSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEEC--CCCChHHHHHHHHHHHHCCCeEEEEEE
Confidence 346777663 33321 257889999999999999544
No 179
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.44 E-value=36 Score=26.96 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
|.|++- -.||++|++.||+|++.+.....
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCChh
Confidence 344443 46899999999999999876554
No 180
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=35.37 E-value=3e+02 Score=24.27 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHhhcCC
Q 042896 17 NPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYKNSS 96 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 96 (216)
.....|++.|.+.|.+|..+.+....+.... ...... ...|. ..+++.+++
T Consensus 321 ~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-----------~~~~~~-~~~D~------------~~l~~~i~~----- 371 (432)
T TIGR01285 321 DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-----------LPVETV-VIGDL------------EDLEDLACA----- 371 (432)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-----------CCcCcE-EeCCH------------HHHHHHHhh-----
Confidence 4668888888889999887776654322110 111000 00111 123334433
Q ss_pred CCceEEEeCCCCccHHHHHHHhCCCceee
Q 042896 97 FPVNCVVYDSFLPWALDVAKEYGLYGAAF 125 (216)
Q Consensus 97 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 125 (216)
.++|+||... +...+|+++|||.+-+
T Consensus 372 ~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 372 AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 2579999876 4688999999998743
No 181
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=35.37 E-value=51 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEecc
Q 042896 17 NPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.|.+.+++.|.++|.+|.+.=+.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 68999999999999998887554
No 182
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=35.07 E-value=2.5e+02 Score=25.01 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=34.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
-|+++-.=|.|-....-.||+.|..+|..|-++...-..+
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 4777777788999999999999999999999999876553
No 183
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.97 E-value=80 Score=21.81 Aligned_cols=34 Identities=15% Similarity=-0.081 Sum_probs=29.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~ 38 (216)
++....++..|-.-..-++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5666677889999999999999999999988754
No 184
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=34.73 E-value=82 Score=25.34 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=36.9
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
.-+++.-.|+.|..+=.++++...+++|..|-++++......
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 357888899999999999999999999999999999765543
No 185
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=34.42 E-value=2e+02 Score=21.70 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=20.5
Q ss_pred CCccChHHHHHHHHHH-HhCCCeEEEEecc
Q 042896 11 PSQGHINPLLQFAKRL-ASKGVKATLATTH 39 (216)
Q Consensus 11 p~~GH~~P~l~La~~L-a~~G~~Vt~it~~ 39 (216)
.+-||..-|+.|.+.+ -++....+++.+.
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~ 35 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTE 35 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEc
Confidence 4569999999999999 4444444554443
No 186
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.36 E-value=87 Score=25.97 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCC--CCceEEEeCCCCccHHHHHHHhCCCceeec
Q 042896 83 RTLSELIKRYKNSS--FPVNCVVYDSFLPWALDVAKEYGLYGAAFF 126 (216)
Q Consensus 83 ~~l~~~l~~~~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 126 (216)
..++.++++..... ..+.+||+|- +-+..+|+++|||.+.+.
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 46788887764321 2467888984 346677999999998863
No 187
>PRK05920 aromatic acid decarboxylase; Validated
Probab=34.22 E-value=53 Score=25.81 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=29.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
.+|++- ..|.....=..++.+.|.+.|++|+++.|.....
T Consensus 4 krIllg-ITGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~~ 43 (204)
T PRK05920 4 KRIVLA-ITGASGAIYGVRLLECLLAADYEVHLVISKAAQK 43 (204)
T ss_pred CEEEEE-EeCHHHHHHHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 344443 3455555678999999999999999999986544
No 188
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=34.04 E-value=1.2e+02 Score=23.41 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCC--CceEEEeCCCCccHHHHHHHhCCCceeecc
Q 042896 84 TLSELIKRYKNSSF--PVNCVVYDSFLPWALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 84 ~l~~~l~~~~~~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 127 (216)
.++.+++.+.+... .+.+||+|---.-+...|+++|||.+.+..
T Consensus 13 ~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 13 NLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred hHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 45556665543221 356778886433456889999999887543
No 189
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=33.56 E-value=41 Score=22.57 Aligned_cols=35 Identities=31% Similarity=0.384 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEec
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPI 55 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~ 55 (216)
++++|++|++.|++ ++.|......++..+|....+
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~Gi~~~~v 36 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEHGIEVTEV 36 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHTT--EEEC
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHcCCCceee
Confidence 57899999999966 566766665555566764443
No 190
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=32.95 E-value=46 Score=24.04 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCeEEEEeccc
Q 042896 21 QFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 21 ~La~~La~~G~~Vt~it~~~ 40 (216)
-+|.+|++.|++|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999877
No 191
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=32.94 E-value=1e+02 Score=23.90 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=32.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
-|+++-..|.|=..-...||.++..+|.+|.+++.....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 366777788899999999999999999999999987654
No 192
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=32.86 E-value=28 Score=22.33 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCCeEEEEecc
Q 042896 19 LLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~ 39 (216)
=-+|...|..+|+.||=.|..
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTiS 42 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATIS 42 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHH
Confidence 357999999999998855543
No 193
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.71 E-value=48 Score=27.26 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 042896 20 LQFAKRLASKGVKATLATT 38 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~ 38 (216)
.++|+.||+||++|.++.=
T Consensus 20 ~~~A~~lA~~g~~liLvaR 38 (265)
T COG0300 20 AELAKQLARRGYNLILVAR 38 (265)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 6899999999999998764
No 194
>PRK13604 luxD acyl transferase; Provisional
Probab=32.58 E-value=1.1e+02 Score=25.77 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=23.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLA 36 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~i 36 (216)
.+++.....++-.-+..+|+.|+++|+.|...
T Consensus 39 ~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 39 TILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 44454444466666999999999999987654
No 195
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=32.44 E-value=56 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCCeEEEEecccccccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
..+|.++|.++|++|.++.|+.....+
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 478999999999999999998665443
No 196
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=32.28 E-value=77 Score=25.76 Aligned_cols=30 Identities=20% Similarity=0.180 Sum_probs=22.3
Q ss_pred ceE-EEeCCCCc-cHHHHHHHhCCCceeeccc
Q 042896 99 VNC-VVYDSFLP-WALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 99 ~d~-vI~D~~~~-~~~~vA~~lgiP~v~f~~~ 128 (216)
||+ +|.|.-.- -|..-|+++|||.|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 564 68888664 4567799999999987533
No 197
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.25 E-value=1.4e+02 Score=23.52 Aligned_cols=44 Identities=14% Similarity=0.012 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCC--CCceEEEeCCCCccHHHHHHHhCCCceeecc
Q 042896 84 TLSELIKRYKNSS--FPVNCVVYDSFLPWALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 84 ~l~~~l~~~~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 127 (216)
.++.+++++.+.. ..+.+||+|--.--+...|++.|||...+..
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4566666654321 1367899996544568899999999987644
No 198
>PRK07985 oxidoreductase; Provisional
Probab=32.03 E-value=1.7e+02 Score=23.96 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 042896 20 LQFAKRLASKGVKATLAT 37 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it 37 (216)
.++|++|+++|++|.+..
T Consensus 63 ~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 63 RAAAIAYAREGADVAISY 80 (294)
T ss_pred HHHHHHHHHCCCEEEEec
Confidence 789999999999987653
No 199
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.59 E-value=1.1e+02 Score=25.03 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=32.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
-|+++..+|.|=-.-...||..|+++|.+|.++.....
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 36677777889999999999999999999999998753
No 200
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.56 E-value=2.8e+02 Score=22.44 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=21.8
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
.+|+++.--+-| .+||+.|..+|+.|++-+...
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccC
Confidence 456665544444 468999999998877655443
No 201
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=31.49 E-value=2.8e+02 Score=22.44 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
.+|++.|.++|+ |++-++.
T Consensus 13 r~la~~L~~~g~-v~~sv~t 31 (249)
T PF02571_consen 13 RKLAERLAEAGY-VIVSVAT 31 (249)
T ss_pred HHHHHHHHhcCC-EEEEEEh
Confidence 478999999998 5554333
No 202
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.42 E-value=1.2e+02 Score=22.42 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=32.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+++.-.||.|=-.....|++.++++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56677889999999999999999999999999877543
No 203
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=31.37 E-value=47 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=15.4
Q ss_pred HHHHHHhhcCCCCceEEEeCCCCc
Q 042896 86 SELIKRYKNSSFPVNCVVYDSFLP 109 (216)
Q Consensus 86 ~~~l~~~~~~~~~~d~vI~D~~~~ 109 (216)
+++.+++. .+++||||+||.-.
T Consensus 126 ~ki~e~lp--~r~VdvVlSDMapn 147 (232)
T KOG4589|consen 126 RKIFEALP--NRPVDVVLSDMAPN 147 (232)
T ss_pred HHHHHhCC--CCcccEEEeccCCC
Confidence 44555553 36899999999763
No 204
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.37 E-value=1.1e+02 Score=27.02 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=34.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
.|+++..+|.|=..-...||+.|.++|++|.+++.....
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 477888889999999999999999999999999887553
No 205
>PRK06128 oxidoreductase; Provisional
Probab=31.22 E-value=1.7e+02 Score=23.90 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 042896 20 LQFAKRLASKGVKATLAT 37 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it 37 (216)
..+|+.|+++|++|.+..
T Consensus 69 ~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 69 RATAIAFAREGADIALNY 86 (300)
T ss_pred HHHHHHHHHcCCEEEEEe
Confidence 579999999999987654
No 206
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.07 E-value=49 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=26.7
Q ss_pred eEEEEcCCCccChHHH------------HHHHHHHHhCCCeEEEEecccc
Q 042896 4 HVVLLPYPSQGHINPL------------LQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~------------l~La~~La~~G~~Vt~it~~~~ 41 (216)
+|++-.-|..--+.|. ..||+.+..+|++||+++.+..
T Consensus 258 kvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 258 RVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred EEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 5555555544555443 4789999999999999987643
No 207
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=31.05 E-value=46 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.211 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCeEEEEeccc
Q 042896 20 LQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~~ 40 (216)
..+|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 378999999999999998864
No 208
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.44 E-value=91 Score=22.53 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=29.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEec
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGV-KATLATT 38 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~-~Vt~it~ 38 (216)
+.+++.+.....+|.--+-++.++|.++|. ++.++..
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 457888888888899889999999999886 5555554
No 209
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=30.32 E-value=1.1e+02 Score=21.41 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=26.3
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
..++++.+... +...++-++.|.+.|.+++++....
T Consensus 10 ~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 10 ADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeEE
Confidence 45677765444 3457899999999999999886643
No 210
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=30.22 E-value=1.4e+02 Score=27.11 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeeccc
Q 042896 83 RTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 83 ~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~ 128 (216)
+..++.++++.+. ++++||.|.. +...|+++|++.+...+.
T Consensus 132 ~e~~~~~~~l~~~--G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRAR--GIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHC--CCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 4566677776543 5899999985 579999999999987664
No 211
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=30.18 E-value=44 Score=25.71 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=24.8
Q ss_pred HHHHHHHHhhcCCCCceEEEeCCCCccH--HHHHHHhCCCceeeccc
Q 042896 84 TLSELIKRYKNSSFPVNCVVYDSFLPWA--LDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 84 ~l~~~l~~~~~~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~~~ 128 (216)
.++.+++... ++.-+|.|.|++.+ ..+|.++|--++.+=..
T Consensus 180 l~~~lI~~~t----~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~ 222 (231)
T PF01555_consen 180 LIERLIKAST----NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEID 222 (231)
T ss_dssp HHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHhhh----ccceeeehhhhccChHHHHHHHcCCeEEEEeCC
Confidence 3455555432 34678999999764 67888999887776443
No 212
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=30.16 E-value=89 Score=25.14 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=29.6
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
|-|=-.-.+-||..|+++|-+|+++=..+|.+.
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 568889999999999999999999999888753
No 213
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=30.07 E-value=56 Score=24.25 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCeEEEEeccccccccCCCCceEEe
Q 042896 20 LQFAKRLASKGVKATLATTHYTAKSICAPHVGVEP 54 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~ 54 (216)
..+++.|.++||+|+.++-......- ..+++...
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~ 45 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQ 45 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEE
T ss_pred HHHHHHHHHCCCEEEEEecCchhccc-ccccccce
Confidence 45899999999999999865443211 34555553
No 214
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=30.00 E-value=71 Score=24.45 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=26.2
Q ss_pred CCccChHH-HHHHHHHHHh-CCCeEEEEecccccc
Q 042896 11 PSQGHINP-LLQFAKRLAS-KGVKATLATTHYTAK 43 (216)
Q Consensus 11 p~~GH~~P-~l~La~~La~-~G~~Vt~it~~~~~~ 43 (216)
-|.||... ..++.+.|.+ +|++|.++.|+....
T Consensus 7 tGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 7 TGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred EccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 35588866 8899999985 699999999876553
No 215
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=29.94 E-value=50 Score=26.22 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCeEEEEeccc
Q 042896 20 LQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~~ 40 (216)
..+|+.|.++||+|+.+-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999987654
No 216
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=29.71 E-value=75 Score=25.39 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=28.2
Q ss_pred EcCCCccCh-HHHHHHHHHHHhC--CCeEEEEeccccccc
Q 042896 8 LPYPSQGHI-NPLLQFAKRLASK--GVKATLATTHYTAKS 44 (216)
Q Consensus 8 ~p~p~~GH~-~P~l~La~~La~~--G~~Vt~it~~~~~~~ 44 (216)
+-..|.|+. .=..+|.+.|.++ |++|.++.|+.....
T Consensus 4 ~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~ 43 (234)
T TIGR02700 4 WGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEV 43 (234)
T ss_pred EEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhH
Confidence 334455666 4789999999999 999999998765443
No 217
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=29.67 E-value=53 Score=26.98 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.4
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEec
Q 042896 14 GHINPLLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~ 38 (216)
||+.| +...+.|.+.||++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7777888888999888665
No 218
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=29.48 E-value=91 Score=27.30 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=18.7
Q ss_pred CceEEEeCCCCccHHHHHHHhCCCceee
Q 042896 98 PVNCVVYDSFLPWALDVAKEYGLYGAAF 125 (216)
Q Consensus 98 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f 125 (216)
+||++|.+. +...+|+++|+|.+.+
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~ 394 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVI 394 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEE
Confidence 468888877 3566788899998765
No 219
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.39 E-value=1.5e+02 Score=18.73 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=26.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it 37 (216)
+++....+.|=-.-...|++.|+++|.+|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 344455567777888999999999999998776
No 220
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=29.32 E-value=1.5e+02 Score=22.99 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=15.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it 37 (216)
|+++..++.-|---+.+.+++|++.|.+|.++.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 444444444443334455555555555554444
No 221
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.23 E-value=1.2e+02 Score=20.98 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=20.0
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCC-eEEEEe
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGV-KATLAT 37 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~-~Vt~it 37 (216)
+.++.+......|+....++++.+.+++. ++.++.
T Consensus 51 pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~v 86 (119)
T cd02067 51 ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLV 86 (119)
T ss_pred CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEE
Confidence 45555555555566666666666666554 454443
No 222
>PLN02316 synthase/transferase
Probab=29.06 E-value=56 Score=32.30 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=28.1
Q ss_pred ceEEEEc-----CCCccChH-HHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLP-----YPSQGHIN-PLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p-----~p~~GH~~-P~l~La~~La~~G~~Vt~it~~~ 40 (216)
.||+++. +.-.|-+. -.-.|+++|+++||+|.++++..
T Consensus 588 M~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 588 MHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred cEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 4777765 22235553 45799999999999999999864
No 223
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.00 E-value=92 Score=27.24 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=24.1
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.+|+++ |-|+ .-+ .+|+.|+++|++|+++...
T Consensus 6 k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCC
Confidence 355554 4566 444 9999999999999988764
No 224
>PRK04148 hypothetical protein; Provisional
Probab=28.83 E-value=61 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=20.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
+|+.+-.. .| .++|+.|++.|++|+.+=...
T Consensus 19 kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 19 KIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred EEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 45555433 32 357889999999999875443
No 225
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=28.78 E-value=97 Score=22.76 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCeEEEEecccccccc
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTAKSI 45 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~~~~ 45 (216)
-.+-|+.+|-.+|++|++..++.....+
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 3688999999999999999998765443
No 226
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.68 E-value=1.5e+02 Score=22.80 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCceEEEeCCCCc-cHHHHHHHhCCCceeecccchh
Q 042896 84 TLSELIKRYKNSSFPVNCVVYDSFLP-WALDVAKEYGLYGAAFFTNSAT 131 (216)
Q Consensus 84 ~l~~~l~~~~~~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~f~~~~a~ 131 (216)
.+++++++... +..++|-..+-+ ||..+|+++|+|.|.+.++-..
T Consensus 48 ~l~~~i~~~~~---~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 48 QLEQLIEELKP---ENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHhCCC---CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 34455554321 124677776664 6789999999999999876543
No 227
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=1.6e+02 Score=25.45 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=41.6
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc--c-cCCCCceEEeccC
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK--S-ICAPHVGVEPISD 57 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~--~-~~~~~i~~~~~~~ 57 (216)
+.|+.++-..-.||-==|--=|.-||..|++|+++.-....+ . +..++|+++.++.
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPN 70 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCC
Confidence 567788877777988678888999999999999986433321 2 2337899998863
No 228
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=28.20 E-value=3.3e+02 Score=22.22 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-CCceEEeccCCC
Q 042896 1 NRRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA-PHVGVEPISDGF 59 (216)
Q Consensus 1 ~~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~-~~i~~~~~~~~~ 59 (216)
++.+|+++-+|+...-. +..+.|.+.|+.+.++........... ..++...+|-|.
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGf 58 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGF 58 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCC
Confidence 35789999999987553 667888889999988876432111111 346666677553
No 229
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=28.09 E-value=2.5e+02 Score=20.69 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEecccc
Q 042896 19 LLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+.++-+.|.++|+.+.++|...+
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~ 114 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKN 114 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcc
Confidence 56778889999999999886433
No 230
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=28.06 E-value=61 Score=25.76 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 042896 20 LQFAKRLASKGVKATLAT 37 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it 37 (216)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 578999999999999875
No 231
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.97 E-value=3.3e+02 Score=22.14 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhhcCCCCceEEEeCCCCc---cHHHHHHHhCCCcee
Q 042896 82 SRTLSELIKRYKNSSFPVNCVVYDSFLP---WALDVAKEYGLYGAA 124 (216)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~d~vI~D~~~~---~~~~vA~~lgiP~v~ 124 (216)
.+.++.+++++.+ -++.+.|.-.. -+..+|++.|||++.
T Consensus 137 ~~aM~~~m~~Lk~----r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALKE----RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHHH----CCeEEEcccccccchhhhhHhhcCCceee
Confidence 3456667777643 25777777553 356899999999976
No 232
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=27.67 E-value=43 Score=21.78 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=20.2
Q ss_pred CceEEEeCCCCcc--HHHHHHHhCCCceeec
Q 042896 98 PVNCVVYDSFLPW--ALDVAKEYGLYGAAFF 126 (216)
Q Consensus 98 ~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 126 (216)
++.-||.+.-... +.-+|+++|||.++=.
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 3567777765543 5689999999998743
No 233
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.54 E-value=1.7e+02 Score=20.28 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=20.3
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEE
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLA 36 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~i 36 (216)
..|.-.-+..+++.|+++|+.|..+
T Consensus 8 ~~~~~~~~~~~~~~l~~~G~~v~~~ 32 (145)
T PF12695_consen 8 WGGSRRDYQPLAEALAEQGYAVVAF 32 (145)
T ss_dssp TTTTTHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3355667899999999999987766
No 234
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=27.52 E-value=56 Score=25.35 Aligned_cols=37 Identities=35% Similarity=0.384 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEecc
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPIS 56 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~ 56 (216)
=+.+||+.|.+.|+++ +.|......++..+|....+.
T Consensus 12 ~l~~lAk~L~~lGf~I--~AT~GTAk~L~e~GI~v~~V~ 48 (187)
T cd01421 12 GLVEFAKELVELGVEI--LSTGGTAKFLKEAGIPVTDVS 48 (187)
T ss_pred cHHHHHHHHHHCCCEE--EEccHHHHHHHHcCCeEEEhh
Confidence 3679999999999987 466666655655677766654
No 235
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=27.35 E-value=49 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=22.6
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 9 PYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 9 p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
-+||+|+++=-.+|++++.+.|. +|+-+.
T Consensus 78 i~pGyg~lse~~~fa~~~~~~gi--~fiGp~ 106 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAGI--IFIGPS 106 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT---EESSS-
T ss_pred cccccchhHHHHHHHHHHHHCCC--EEECcC
Confidence 36899999999999999998874 555443
No 236
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.35 E-value=73 Score=26.06 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=21.3
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
||+.|++ ..+.|.+.|+++.++....
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 9999976 6778888899998887653
No 237
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=27.24 E-value=75 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEecccc
Q 042896 17 NPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
-+.+++.+.|.++|+.|.++|....
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 4689999999999999999998754
No 238
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.02 E-value=1.5e+02 Score=20.51 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=26.9
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 11 PSQGHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 11 p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
-..|.---+++.++.+.++|..|..+|.....+
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 455777889999999999999998888865544
No 239
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=27.02 E-value=76 Score=27.85 Aligned_cols=26 Identities=27% Similarity=0.627 Sum_probs=20.8
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
||+.|++. .+.|.+.||++.++....
T Consensus 50 Ghlv~l~~-l~~lq~~G~~~~~ligd~ 75 (410)
T PRK13354 50 GHLVPLMK-LKRFQDAGHRPVILIGGF 75 (410)
T ss_pred hhHHHHHH-HHHHHHcCCeEEEEEccc
Confidence 99999665 568889999998887543
No 240
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=26.90 E-value=84 Score=25.41 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=38.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCC--CeEEEEeccccccccCC-CCc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKG--VKATLATTHYTAKSICA-PHV 50 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G--~~Vt~it~~~~~~~~~~-~~i 50 (216)
+|+++-.-+-|-++-+..+.+.|.++. .+|++++.+.+...++. +.|
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~i 50 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEV 50 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCcc
Confidence 578888888999999999999999964 89999999877655543 444
No 241
>PRK07206 hypothetical protein; Provisional
Probab=26.66 E-value=4e+02 Score=22.91 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=24.2
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
..+++++-.- ..-..+++.+.++|+++.+++....
T Consensus 2 ~k~~liv~~~-----~~~~~~~~a~~~~G~~~v~v~~~~~ 36 (416)
T PRK07206 2 MKKVVIVDPF-----SSGKFLAPAFKKRGIEPIAVTSSCL 36 (416)
T ss_pred CCeEEEEcCC-----chHHHHHHHHHHcCCeEEEEEcCCC
Confidence 4566766632 2235688999999999888887643
No 242
>PRK14098 glycogen synthase; Provisional
Probab=26.55 E-value=66 Score=28.80 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 15 HINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 15 H~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
=-.-+-.|.|.|+++||+|.++.+.
T Consensus 24 l~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 24 LADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3356788999999999999999984
No 243
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=26.48 E-value=65 Score=26.30 Aligned_cols=28 Identities=11% Similarity=-0.065 Sum_probs=23.0
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
|--.-+.+|++.|+++|+.|++++....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4445589999999999999999987644
No 244
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.41 E-value=1e+02 Score=26.00 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=41.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSICA-PHVG 51 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~--G~~Vt~it~~~~~~~~~~-~~i~ 51 (216)
..+|+++-.-+.|-+.-...+.+.|.++ +.+|++++.+.+.+.++. +.|+
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id 57 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEIN 57 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCce
Confidence 4589999999999999999999999986 899999999877765544 5553
No 245
>PLN02828 formyltetrahydrofolate deformylase
Probab=26.34 E-value=1.7e+02 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhcCC--CCceEEEeCCC---CccHHHHHHHhCCCceeecc
Q 042896 83 RTLSELIKRYKNSS--FPVNCVVYDSF---LPWALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 83 ~~l~~~l~~~~~~~--~~~d~vI~D~~---~~~~~~vA~~lgiP~v~f~~ 127 (216)
..+++++.++.... ..+.+||++.- .......|+++|||...+..
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 57788888764321 23678899873 22467889999999986643
No 246
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.33 E-value=66 Score=27.06 Aligned_cols=18 Identities=28% Similarity=0.588 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCeEEEEec
Q 042896 21 QFAKRLASKGVKATLATT 38 (216)
Q Consensus 21 ~La~~La~~G~~Vt~it~ 38 (216)
..|++||+||++|.++.-
T Consensus 64 ayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 64 AYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHcCCEEEEEeC
Confidence 679999999999877763
No 247
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.30 E-value=1.4e+02 Score=26.44 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=34.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
-|+++-.+|.|=..-...||..|..+|.+|.++++....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 367777889999999999999999999999999987654
No 248
>PRK06849 hypothetical protein; Provisional
Probab=26.21 E-value=1.5e+02 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=25.5
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
+.+|++.- - -..--+++++.|.++|++|.++.+..
T Consensus 4 ~~~VLI~G---~-~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITG---A-RAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeC---C-CcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34566653 2 22257999999999999999987764
No 249
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=26.11 E-value=62 Score=23.11 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=23.4
Q ss_pred HHHHHhhcCCCCceEEEeCCCCc------cHHHHHHHhCCCceeeccc
Q 042896 87 ELIKRYKNSSFPVNCVVYDSFLP------WALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 87 ~~l~~~~~~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~ 128 (216)
++++.+.++. +| +||.+.... -...+|+++|+|.+..+..
T Consensus 3 ~~~~~L~~A~-rP-~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 3 EAADLLSSAK-RP-VILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHH-S-SE-EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHhCC-CE-EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 4444444443 45 666665432 2357899999999876543
No 250
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=26.06 E-value=1.7e+02 Score=22.09 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCce
Q 042896 82 SRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGA 123 (216)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 123 (216)
.+...++++.+.+.+. .-+||+.....+...+++++|+..+
T Consensus 89 ~~~~~~~l~~l~~~g~-~v~ivS~s~~~~v~~~~~~lg~~~~ 129 (202)
T TIGR01490 89 YPEARDLIRWHKAEGH-TIVLVSASLTILVKPLARILGIDNA 129 (202)
T ss_pred cHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHcCCcce
Confidence 4456666766654433 3477777777888899999999864
No 251
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=25.93 E-value=1.6e+02 Score=22.60 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=21.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEE
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLA 36 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~i 36 (216)
|++++ -..|--.-+..+|.+|+++|+.|.+.
T Consensus 17 Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 17 VVVIH-DIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp EEEE--BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEc-CCCCCchHHHHHHHHHHhcCCCEEec
Confidence 44443 55687788889999999999766543
No 252
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=25.75 E-value=1e+02 Score=22.06 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=35.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+..+-+.|..|.+-+.|.-++-++|.+.-.++.++|+.+..
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpDI 86 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDI 86 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCCe
Confidence 34678889999999999999999999988999999987543
No 253
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=25.71 E-value=1.6e+02 Score=22.55 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=43.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccc-cCC---CCceEEeccCCCCCCCCcccCCHHHHHHHHH
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKS-ICA---PHVGVEPISDGFDEGGYAQAKNEDLYLKSFE 78 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~--G~~Vt~it~~~~~~~-~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (216)
++-+=..+.|=++....|+++|.++ |+.|.+-++...... ... ..+....+|-+.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~------------------- 83 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDF------------------- 83 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SS-------------------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccC-------------------
Confidence 3344455668899999999999987 787776555332221 111 122222233111
Q ss_pred HhhhHHHHHHHHHhhcCCCCce-EEEeCC-CCccHHHHHHHhCCCceeecc
Q 042896 79 DNGSRTLSELIKRYKNSSFPVN-CVVYDS-FLPWALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~d-~vI~D~-~~~~~~~vA~~lgiP~v~f~~ 127 (216)
....+.+++.+ + |+ +|+.+. +++-....|++.|||.+....
T Consensus 84 ---~~~~~rfl~~~----~-P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 ---PWAVRRFLDHW----R-PDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ---HHHHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ---HHHHHHHHHHh----C-CCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12334556655 2 35 455554 223335678899999998764
No 254
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=25.61 E-value=1.9e+02 Score=24.87 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=21.3
Q ss_pred CceEEEeCCCCcc----------HHHHHHHhCCCceeec
Q 042896 98 PVNCVVYDSFLPW----------ALDVAKEYGLYGAAFF 126 (216)
Q Consensus 98 ~~d~vI~D~~~~~----------~~~vA~~lgiP~v~f~ 126 (216)
.+|++|+-..+.. +..|.+++|||.++-.
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 4799999987642 2346678999998743
No 255
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=25.55 E-value=97 Score=26.06 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=40.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSICA-PHVG 51 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~--G~~Vt~it~~~~~~~~~~-~~i~ 51 (216)
+|+++-.-+-|-++-...+.+.|.++ +.+|++++.+.+...++. +.|+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd 52 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVN 52 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccC
Confidence 68999999999999999999999985 899999998877665544 5554
No 256
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=25.49 E-value=79 Score=26.29 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=25.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
+.+|+++-..+.|= -+|..|++.||+|+++.-..
T Consensus 5 ~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC
Confidence 35777775555553 47888999999999997653
No 257
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.39 E-value=1.3e+02 Score=26.70 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=27.0
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+++|+++.-|+- |----+-.||+|++.|+.++++...
T Consensus 266 ~P~V~Ilcgpgn-nggdg~v~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 266 WPLVAILCGPGN-NGGDGLVCGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CceEEEEeCCCC-ccchhHHHHHHHHHcCceeEEEeec
Confidence 367999998865 2222233999999999998887764
No 258
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=25.38 E-value=76 Score=26.57 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=23.6
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
.+|.++-..+.| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 467776544444 35789999999999998764
No 259
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=25.26 E-value=78 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=21.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it 37 (216)
=+++|.-|.||= +..|+++||+|+=+=
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvD 66 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVD 66 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEE
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEe
Confidence 467799999987 667889999987654
No 260
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=25.22 E-value=1.4e+02 Score=24.20 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=29.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCe--EEEEe
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVK--ATLAT 37 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~--Vt~it 37 (216)
+=||+.-+|..|--.-..+|.+.|+++|+. |+++.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 347888899999999999999999999965 44443
No 261
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.09 E-value=1.4e+02 Score=22.70 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=31.2
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
..+++.--+|.|=-.-...+++++..+|+.|-|++......
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~ 88 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD 88 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec
Confidence 46788888888877778889999999999999998765543
No 262
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.97 E-value=4.4e+02 Score=22.51 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=59.8
Q ss_pred ccChHHHHHHHHHHHhCCCeEEEEeccccc--cccCCCCceEEeccCCCCCCCCcccCCHH-HHHHHHHHhhhHHHHHHH
Q 042896 13 QGHINPLLQFAKRLASKGVKATLATTHYTA--KSICAPHVGVEPISDGFDEGGYAQAKNED-LYLKSFEDNGSRTLSELI 89 (216)
Q Consensus 13 ~GH~~P~l~La~~La~~G~~Vt~it~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l 89 (216)
.-|+.-+-.+-+.|..+||+|-+.+-.... +.+..-+|.+..+... + ...+. .+.....+. -.|.++.
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~----g---~~tl~~Kl~~~~eR~--~~L~ki~ 80 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKH----G---GVTLKEKLLESAERV--YKLSKII 80 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeeccc----C---CccHHHHHHHHHHHH--HHHHHHH
Confidence 346666788899999999998765544322 1112245666554310 1 01122 122222221 1233333
Q ss_pred HHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceeecccc
Q 042896 90 KRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAFFTNS 129 (216)
Q Consensus 90 ~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~~~ 129 (216)
. + .+||+.+. ...+.+..+|--+|+|.+.|.-..
T Consensus 81 ~----~-~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 81 A----E-FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred h----h-cCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 3 2 25789998 777889999999999999997654
No 263
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=24.86 E-value=74 Score=26.46 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCeEEEEecccc
Q 042896 20 LQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~~~ 41 (216)
-+|..+|...||+||+++-...
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCCc
Confidence 4678888999999999986543
No 264
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=24.64 E-value=1.6e+02 Score=21.77 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=28.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+.++-+.+.|=-.-+..|++.|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45666778888888899999999999999988654
No 265
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=24.63 E-value=4.2e+02 Score=22.17 Aligned_cols=108 Identities=8% Similarity=-0.023 Sum_probs=55.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC-CCeEEEEeccccccccCC--CCceEE-eccCCCCCCCCcccCCHHHHHHHHHH
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASK-GVKATLATTHYTAKSICA--PHVGVE-PISDGFDEGGYAQAKNEDLYLKSFED 79 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~-G~~Vt~it~~~~~~~~~~--~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (216)
+|+++. ....|+.=+..+.++|.++ ++++.++.|......... ..+.+. .++-.+. + ...+.......
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~--~--~~~~~~~~~~~--- 73 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIM--S--PGQTLGEITSN--- 73 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecC--C--CCCCHHHHHHH---
Confidence 344433 4567888899999999886 677777777544322111 011111 0000010 0 11122211111
Q ss_pred hhhHHHHHHHHHhhcCCCCceEEEe--CCCCcc-HHHHHHHhCCCceee
Q 042896 80 NGSRTLSELIKRYKNSSFPVNCVVY--DSFLPW-ALDVAKEYGLYGAAF 125 (216)
Q Consensus 80 ~~~~~l~~~l~~~~~~~~~~d~vI~--D~~~~~-~~~vA~~lgiP~v~f 125 (216)
+...+.+.+++. +||+|++ |..... +..+|..+|||.+..
T Consensus 74 -~~~~l~~~l~~~-----~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 74 -MLEGLEELLLEE-----KPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred -HHHHHHHHHHHc-----CCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 112345555542 4688766 444434 467788899999854
No 266
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=24.54 E-value=1.8e+02 Score=23.74 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=17.2
Q ss_pred CceEEEeCCCCc--cHHHHHHHhCCCceeec
Q 042896 98 PVNCVVYDSFLP--WALDVAKEYGLYGAAFF 126 (216)
Q Consensus 98 ~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~ 126 (216)
++.||+++.... .+..+|++.|++.+.+.
T Consensus 220 ~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 250 (282)
T cd01017 220 DVKYIFFEENASSKIAETLAKETGAKLLVLN 250 (282)
T ss_pred CCCEEEEeCCCChHHHHHHHHHcCCcEEEec
Confidence 356777766554 23456677777665544
No 267
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=24.54 E-value=86 Score=23.35 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCeEEEEecc
Q 042896 19 LLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~ 39 (216)
-...++.|.+.|++||++.+.
T Consensus 25 a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 25 AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred HHHHHHHHHhCCCEEEEEcCc
Confidence 477899999999999999543
No 268
>PLN00016 RNA-binding protein; Provisional
Probab=24.37 E-value=71 Score=27.25 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=24.2
Q ss_pred ceEEEEc--CCCccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 3 RHVVLLP--YPSQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 3 ~hv~~~p--~p~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
.+|+++. ..+.|.+ =.+|++.|.++||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 3566651 1234444 3578899999999999987643
No 269
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=24.27 E-value=1.8e+02 Score=22.59 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=31.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+.+.-.|+.|.-.-.++++...+.+|..|.|++++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46777788999999999999999999999999988
No 270
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=24.06 E-value=81 Score=25.51 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=24.7
Q ss_pred ceEEEEcCCCccCh-HHHHHHHHHHHhCCCeEEEEec
Q 042896 3 RHVVLLPYPSQGHI-NPLLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 3 ~hv~~~p~p~~GH~-~P~l~La~~La~~G~~Vt~it~ 38 (216)
.+|+++.-++ +- -=-+-+||.|+++|++|+++..
T Consensus 61 ~~V~VlcG~G--NNGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPG--NNGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCC--CCchhHHHHHHHHHHCCCeEEEEEc
Confidence 3677777444 32 1246789999999999999873
No 271
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=24.00 E-value=83 Score=24.50 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCce
Q 042896 82 SRTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGA 123 (216)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 123 (216)
.+...++++.+.+. . .-+||++.+..++..+++++|+..+
T Consensus 70 ~pga~ell~~lk~~-~-~~~IVS~~~~~~~~~il~~lgi~~~ 109 (203)
T TIGR02137 70 LEGAVEFVDWLRER-F-QVVILSDTFYEFSQPLMRQLGFPTL 109 (203)
T ss_pred CccHHHHHHHHHhC-C-eEEEEeCChHHHHHHHHHHcCCchh
Confidence 45667777777543 2 3588999999999999999999854
No 272
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=23.99 E-value=1.1e+02 Score=25.31 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=39.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEeccccccccCC-CCce
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASK--GVKATLATTHYTAKSICA-PHVG 51 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~--G~~Vt~it~~~~~~~~~~-~~i~ 51 (216)
||+++-.-+.|-+.-...+.+.|.++ +.+||+++.+...+.+.. +.|+
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p~vd 52 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHPAVD 52 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCCCcc
Confidence 79999999999999999999999985 899999998876654433 4444
No 273
>PRK14974 cell division protein FtsY; Provisional
Probab=23.93 E-value=1.9e+02 Score=24.70 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=33.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
-|+++-.+|.|=..-...||..|.++|++|.++++...
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 47788888999999999999999999999999887643
No 274
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=23.85 E-value=1.2e+02 Score=27.35 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=21.0
Q ss_pred CceEEEeCCCCccHHHHHHHhCCCceeec
Q 042896 98 PVNCVVYDSFLPWALDVAKEYGLYGAAFF 126 (216)
Q Consensus 98 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 126 (216)
+||+||.+. |...+|+++|||.+...
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 479999987 56678999999997643
No 275
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=23.80 E-value=2.2e+02 Score=22.15 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCC--CceEEEeCCCCccHHHHHHHhCCCceeecc
Q 042896 84 TLSELIKRYKNSSF--PVNCVVYDSFLPWALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 84 ~l~~~l~~~~~~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~~ 127 (216)
.++.+++.+.+... .+.+||+|--..-+...|++.|||...+..
T Consensus 14 ~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 14 NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECc
Confidence 45566666543321 245667885333467899999999887543
No 276
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=23.73 E-value=98 Score=25.33 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=27.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+++++. .+.| +.|++.+++.|+++|.+|+++....+.
T Consensus 100 ~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 100 TVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred eEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 566665 2333 789999999999999999988765443
No 277
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.64 E-value=1.8e+02 Score=20.08 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=25.5
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 11 PSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 11 p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
-..|.-.-+++.++.+.++|..|..+|...+.
T Consensus 54 S~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 54 SQSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred eCCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 34566677999999999999998888876544
No 278
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=23.59 E-value=83 Score=24.75 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCCceEEEeCCCCccHHHHHHHhCCCceee
Q 042896 83 RTLSELIKRYKNSSFPVNCVVYDSFLPWALDVAKEYGLYGAAF 125 (216)
Q Consensus 83 ~~l~~~l~~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 125 (216)
+..+++++.+.+.+.. .+||+..+..++..+|+++|+-.+.-
T Consensus 80 ~ga~elv~~lk~~G~~-v~iiSgg~~~lv~~ia~~lg~d~~~a 121 (212)
T COG0560 80 PGAEELVAALKAAGAK-VVIISGGFTFLVEPIAERLGIDYVVA 121 (212)
T ss_pred ccHHHHHHHHHHCCCE-EEEEcCChHHHHHHHHHHhCCchhee
Confidence 3456666666544433 47778888888899999999987654
No 279
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=23.57 E-value=76 Score=21.99 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeccccccccCCCCceEEec
Q 042896 15 HINPLLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPI 55 (216)
Q Consensus 15 H~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~ 55 (216)
.-.=++++|+.|.+.|+++ +.|+.....+...++....+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~Gi~~~~v 48 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADAGIPVRAV 48 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHcCCceEEE
Confidence 3345889999999999986 45555554444456655544
No 280
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.47 E-value=1.2e+02 Score=22.98 Aligned_cols=48 Identities=8% Similarity=0.072 Sum_probs=28.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc-ccCCCCceEEecc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK-SICAPHVGVEPIS 56 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~-~~~~~~i~~~~~~ 56 (216)
+++++. +-|.+.| |+.+|.++|.+|+.+..+...+ .+.+.-=+|+.+.
T Consensus 108 ~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 108 AVALVT--RDADFLP---VINKAKENGKETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred EEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 345554 5677655 6778888999999998754332 2222112566554
No 281
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.43 E-value=1.5e+02 Score=23.81 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=31.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+++..-+|.|--.-...+|..++++|.+|-++.+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3444567779999999999999999999999988764
No 282
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=23.35 E-value=1.6e+02 Score=21.08 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=24.8
Q ss_pred cCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 9 PYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 9 p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
|.++.|=-.-.+.||+.|+++|.+|-++-.....
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 3566677788999999999999998887765443
No 283
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=23.27 E-value=5.3e+02 Score=22.83 Aligned_cols=96 Identities=14% Similarity=0.200 Sum_probs=58.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhC--CCeEEEEe-ccccccccCC---CCceEEeccCCCCCCCCcccCCHHHHHHHHH
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASK--GVKATLAT-THYTAKSICA---PHVGVEPISDGFDEGGYAQAKNEDLYLKSFE 78 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~--G~~Vt~it-~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (216)
.+-+-..+.|=.+-...|.++|.++ ++.|++-| |+.-.+.... ..+....+|-+++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~------------------ 112 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP------------------ 112 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch------------------
Confidence 4445556679999999999999998 77777665 3333332222 2233343441111
Q ss_pred HhhhHHHHHHHHHhhcCCCCce-EEEeCC-CCccHHHHHHHhCCCceeecc
Q 042896 79 DNGSRTLSELIKRYKNSSFPVN-CVVYDS-FLPWALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 79 ~~~~~~l~~~l~~~~~~~~~~d-~vI~D~-~~~~~~~vA~~lgiP~v~f~~ 127 (216)
..+.+.++.+ + || +||.+. +++....-+++.|+|.+....
T Consensus 113 ----~~v~rFl~~~----~-P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 113 ----IAVRRFLRKW----R-PKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred ----HHHHHHHHhc----C-CCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 1334455543 2 45 667766 444456778999999998765
No 284
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=23.25 E-value=2.6e+02 Score=23.75 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=23.9
Q ss_pred EEEcCCCccChHHHHHHHHHHHhC-C--CeEEEEec
Q 042896 6 VLLPYPSQGHINPLLQFAKRLASK-G--VKATLATT 38 (216)
Q Consensus 6 ~~~p~p~~GH~~P~l~La~~La~~-G--~~Vt~it~ 38 (216)
++-...|.||.-..-.|++.|.++ | .+|+++-.
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~ 38 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDL 38 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEeh
Confidence 344456889999999999999875 4 45666543
No 285
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=23.02 E-value=1e+02 Score=27.20 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 15 HINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 15 H~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
|+..|.+++..|.++|++|++.....+
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~~ 77 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADDN 77 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCCc
Confidence 467899999999999999999987763
No 286
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.01 E-value=2.3e+02 Score=19.62 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=30.6
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEeccccccccCC-CCceEEeccCC
Q 042896 10 YPSQGHINPLLQFAKRLASKGVKATLATTHYTAKSICA-PHVGVEPISDG 58 (216)
Q Consensus 10 ~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~~~~-~~i~~~~~~~~ 58 (216)
+-..|--.-+++.++.+.++|..|..+|.......... .++....+|++
T Consensus 50 iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 50 VSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMAREHGVPVIIIPKG 99 (119)
T ss_pred EECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHcCCcEEECCCC
Confidence 33456667788888888899999888886443222211 34445555643
No 287
>PRK08939 primosomal protein DnaI; Reviewed
Probab=22.91 E-value=1.5e+02 Score=24.73 Aligned_cols=38 Identities=29% Similarity=0.183 Sum_probs=30.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
.+++.--+|.|=-.=+..+|..|+.+|.+|+|++.+..
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l 195 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF 195 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH
Confidence 47777777887777788999999999999998877643
No 288
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=22.75 E-value=2.5e+02 Score=21.87 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=56.7
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc------cccCC-CCceEEeccCCCCCCCCcccCCHHHHHH
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA------KSICA-PHVGVEPISDGFDEGGYAQAKNEDLYLK 75 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~------~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (216)
-.|.++.-++.|=....+.+|.+.+.+|.+|.++---... ..+.. +++++.....++.- .. .+......
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~---~~-~~~~e~~~ 98 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTW---ET-QDRERDIA 98 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcc---cC-CCcHHHHH
Confidence 3688899999999999999999999999999987532211 01112 46777765543211 11 11111111
Q ss_pred HHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCC
Q 042896 76 SFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFL 108 (216)
Q Consensus 76 ~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~ 108 (216)
. ....++...+.+. + ..+|+||.|=..
T Consensus 99 ~----~~~~~~~a~~~l~-~-~~ydlvVLDEi~ 125 (191)
T PRK05986 99 A----AREGWEEAKRMLA-D-ESYDLVVLDELT 125 (191)
T ss_pred H----HHHHHHHHHHHHh-C-CCCCEEEEehhh
Confidence 1 1223333333332 2 368999999764
No 289
>COG3150 Predicted esterase [General function prediction only]
Probab=22.69 E-value=1.7e+02 Score=22.62 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHhhcCCCCceEEEeCCCC-ccHHHHHHHhCCCceeecccch
Q 042896 84 TLSELIKRYKNSSFPVNCVVYDSFL-PWALDVAKEYGLYGAAFFTNSA 130 (216)
Q Consensus 84 ~l~~~l~~~~~~~~~~d~vI~D~~~-~~~~~vA~~lgiP~v~f~~~~a 130 (216)
.++.++++... +.+ .||--..- .|+--++..+||+.|+|.+.-.
T Consensus 48 ele~~i~~~~~--~~p-~ivGssLGGY~At~l~~~~Girav~~NPav~ 92 (191)
T COG3150 48 ELEKAVQELGD--ESP-LIVGSSLGGYYATWLGFLCGIRAVVFNPAVR 92 (191)
T ss_pred HHHHHHHHcCC--CCc-eEEeecchHHHHHHHHHHhCChhhhcCCCcC
Confidence 44555554321 223 44444433 6999999999999999988643
No 290
>PRK14099 glycogen synthase; Provisional
Probab=22.67 E-value=86 Score=28.02 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=27.5
Q ss_pred CceEEEE-----cCCCc-cChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 2 RRHVVLL-----PYPSQ-GHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 2 ~~hv~~~-----p~p~~-GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+.+|+++ |+.=. |=-.-+-.|.++|+++||+|.++.+.
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3466655 33333 33366789999999999999999984
No 291
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.56 E-value=1.8e+02 Score=21.72 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=26.5
Q ss_pred CCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 11 PSQGHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 11 p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
-..|.-.-+++.++.+.++|..|..+|.....+
T Consensus 80 S~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 80 SGSGETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 345777789999999999999999888765543
No 292
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.49 E-value=1.6e+02 Score=23.22 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=32.4
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+++++.+.+....|...+.++.++|.+.|.++.++...
T Consensus 139 ~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG 176 (213)
T cd02069 139 KADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGG 176 (213)
T ss_pred CCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 57889999888899999999999999998887776654
No 293
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=22.44 E-value=1.8e+02 Score=23.60 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=30.1
Q ss_pred eEEEEcCC--CccChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 4 HVVLLPYP--SQGHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 4 hv~~~p~p--~~GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
+|++++.. |.|-......|+..||.+|..|.++-..-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 46666654 55888999999999999999999987654
No 294
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=22.41 E-value=76 Score=25.28 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCeEEEEeccccc
Q 042896 18 PLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 18 P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
+.++|.+.+.++|..|.|+|.....
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRPES 143 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETT
T ss_pred HHHHHHHHHHHCCCeEEEEecCCch
Confidence 3889999999999999999975443
No 295
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.39 E-value=1.7e+02 Score=18.32 Aligned_cols=34 Identities=26% Similarity=0.518 Sum_probs=26.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEec
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATT 38 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~ 38 (216)
.|+++++. ..+..-.+++++.|.+.|..|-+...
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 46666644 56778899999999999998876443
No 296
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=21.95 E-value=1e+02 Score=22.84 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCeEEEEec
Q 042896 20 LQFAKRLASKGVKATLATT 38 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~ 38 (216)
..+|+.|+++||+|++...
T Consensus 14 ~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp HHHHHHHHHTTTEEEEEES
T ss_pred HHHHHHHHhcCCeEEeecc
Confidence 4689999999999998763
No 297
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.93 E-value=2.1e+02 Score=21.42 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=29.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEe
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it 37 (216)
-|.++.-++.|=....+.+|-+.+.+|++|.++-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4677888899999999999999999999999843
No 298
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.90 E-value=1.6e+02 Score=21.93 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=19.3
Q ss_pred CceEEEeCCCCcc--HHHHHHHhCCCceeec
Q 042896 98 PVNCVVYDSFLPW--ALDVAKEYGLYGAAFF 126 (216)
Q Consensus 98 ~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 126 (216)
+||+||......- ..+.-++.|||.+.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 5799988654322 3344467999998875
No 299
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=21.81 E-value=98 Score=26.77 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=24.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 4 HVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 4 hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
-|++|.-..-|+-+-.-.+|..||++|+-|..+-..
T Consensus 101 PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 101 PVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp EEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 478888777899999999999999999977666544
No 300
>PRK04280 arginine repressor; Provisional
Probab=21.78 E-value=70 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
-+|++.|..+|++||=.|-.
T Consensus 22 eeL~~~L~~~Gi~vTQATiS 41 (148)
T PRK04280 22 DELVDRLREEGFNVTQATVS 41 (148)
T ss_pred HHHHHHHHHcCCCeehHHHH
Confidence 47899999999999876654
No 301
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.68 E-value=2.3e+02 Score=23.13 Aligned_cols=31 Identities=6% Similarity=-0.059 Sum_probs=23.4
Q ss_pred CceEEEeCCCCc------cHHHHHHHhCCCceeeccc
Q 042896 98 PVNCVVYDSFLP------WALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 98 ~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~~~ 128 (216)
.+|+|++-.-.. -...+|+.||+|.+.+.+.
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 389999865442 2468999999999988654
No 302
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=21.66 E-value=1.4e+02 Score=25.30 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=23.2
Q ss_pred CceE-EEeCCCC-ccHHHHHHHhCCCceeeccc
Q 042896 98 PVNC-VVYDSFL-PWALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 98 ~~d~-vI~D~~~-~~~~~vA~~lgiP~v~f~~~ 128 (216)
.||+ ||.|.-. ..+..-|.++|||.|.+.-+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 4675 5778765 45678899999999998643
No 303
>PRK12404 stage V sporulation protein AD; Provisional
Probab=21.60 E-value=2.7e+02 Score=23.73 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=21.4
Q ss_pred ceEEEe-CCCC--ccHHHHHHHhCCCceeecccch
Q 042896 99 VNCVVY-DSFL--PWALDVAKEYGLYGAAFFTNSA 130 (216)
Q Consensus 99 ~d~vI~-D~~~--~~~~~vA~~lgiP~v~f~~~~a 130 (216)
+|.++. |... ..+..+++++|||.+-....++
T Consensus 76 ID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gACS 110 (334)
T PRK12404 76 IQFFLAGDLMNQITPTSFAARTLGIPYLGLFGACS 110 (334)
T ss_pred CCEEEEEecCCCcCcHHHHHHHhCCCccceeecCH
Confidence 676665 6552 3345888999999876655443
No 304
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=21.55 E-value=92 Score=25.57 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
+..|..|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 56788999999999999765
No 305
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.46 E-value=1.1e+02 Score=25.48 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=23.8
Q ss_pred CceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 2 RRHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 2 ~~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+.+|.++-....| ..+|+.|+++||+|++....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 4566666443333 46899999999999988754
No 306
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.35 E-value=1.9e+02 Score=23.65 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCeEEEEeccccccccCCCCceEEeccCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHhhcCCCC
Q 042896 19 LLQFAKRLASKGVKATLATTHYTAKSICAPHVGVEPISDGFDEGGYAQAKNEDLYLKSFEDNGSRTLSELIKRYKNSSFP 98 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 98 (216)
-..|+++|+..+..+++.++.......... +.-.... |. ...+.+.+++++. +
T Consensus 14 ar~la~~L~~~~~~~~~ss~t~~g~~l~~~-~~~~~~~------G~---------------l~~e~l~~~l~e~-----~ 66 (257)
T COG2099 14 ARALAKKLAAAPVDIILSSLTGYGAKLAEQ-IGPVRVG------GF---------------LGAEGLAAFLREE-----G 66 (257)
T ss_pred HHHHHHHhhccCccEEEEEcccccccchhc-cCCeeec------Cc---------------CCHHHHHHHHHHc-----C
Confidence 468999999999777776665443222110 0000000 10 0123455555542 3
Q ss_pred ceEEEeCCCCccH-------HHHHHHhCCCceeecc
Q 042896 99 VNCVVYDSFLPWA-------LDVAKEYGLYGAAFFT 127 (216)
Q Consensus 99 ~d~vI~D~~~~~~-------~~vA~~lgiP~v~f~~ 127 (216)
+ ++|.|.-.+++ ..+|++.|||++.|--
T Consensus 67 i-~llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 67 I-DLLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred C-CEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 4 56677777764 3567788888888743
No 307
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=21.31 E-value=1.1e+02 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 15 HINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 15 H~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
.+-++++|.+.|.++|++|.++|....
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 355899999999999999999998654
No 308
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=21.25 E-value=96 Score=25.43 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCeEEEEecc
Q 042896 19 LLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 19 ~l~La~~La~~G~~Vt~it~~ 39 (216)
=+-+|..|+++|++|+++=-.
T Consensus 13 Gl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 13 GLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHhcccccccchhc
Confidence 367899999999999998643
No 309
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.19 E-value=1.6e+02 Score=26.64 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=20.7
Q ss_pred CceEEEeCCCCccHHHHHHHhCCCceee
Q 042896 98 PVNCVVYDSFLPWALDVAKEYGLYGAAF 125 (216)
Q Consensus 98 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f 125 (216)
+||+||.+. +...+|+++|||.+..
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 478999887 5678899999998865
No 310
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.98 E-value=54 Score=21.22 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEe
Q 042896 17 NPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 17 ~P~l~La~~La~~G~~Vt~it 37 (216)
+=||.|..++.++|.+|+|..
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~ 52 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQ 52 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHH
Confidence 458899999999999999864
No 311
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=20.97 E-value=91 Score=25.44 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
..+|+.|+++|+.||+++-.
T Consensus 124 ~~~a~~L~~~GI~vtli~Ds 143 (253)
T PRK06372 124 IDMAKLLVKSGIDVVLLTDA 143 (253)
T ss_pred HHHHHHHHHCCCCEEEEehh
Confidence 37999999999999987543
No 312
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=20.90 E-value=2.1e+02 Score=22.87 Aligned_cols=43 Identities=30% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHHhhcCCCCceEEEeCCCCcc--HHHHHHHhCCCceeeccc
Q 042896 84 TLSELIKRYKNSSFPVNCVVYDSFLPW--ALDVAKEYGLYGAAFFTN 128 (216)
Q Consensus 84 ~l~~~l~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~ 128 (216)
.+.++.+.+.+ .++.||+++....- +..+|++.|+|.+.+.+.
T Consensus 187 ~l~~l~~~ik~--~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 187 DLAELIKLIKE--NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHH--TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHhhh--cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 34444444433 35789999887654 457889999998877665
No 313
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=20.76 E-value=2.4e+02 Score=25.06 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=34.5
Q ss_pred ceEEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccc
Q 042896 3 RHVVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTA 42 (216)
Q Consensus 3 ~hv~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~ 42 (216)
..|+++-..|.|=..-+..||..|..+|.+|.++++....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3577787889999999999999999999999999987543
No 314
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=20.72 E-value=2.4e+02 Score=20.65 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=27.6
Q ss_pred EEcCCCccChHHHHHHHHHHHhCCCeEEEEecccccc
Q 042896 7 LLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAK 43 (216)
Q Consensus 7 ~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~ 43 (216)
++-+-..|.-.-+++.++.+.++|..+..+|.....+
T Consensus 83 ~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 83 LLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 3344456777888899999999999888888765443
No 315
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=20.70 E-value=1.7e+02 Score=26.51 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=20.2
Q ss_pred CceEEEeCCCCccHHHHHHHhCCCceee
Q 042896 98 PVNCVVYDSFLPWALDVAKEYGLYGAAF 125 (216)
Q Consensus 98 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f 125 (216)
+||+||.+. +...+|+++|||.+.+
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 479999776 4677999999998755
No 316
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=20.62 E-value=1.4e+02 Score=22.95 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=27.0
Q ss_pred EEEEcCCCccCh-HHHHHHHHHHHhCCCeEEEEe
Q 042896 5 VVLLPYPSQGHI-NPLLQFAKRLASKGVKATLAT 37 (216)
Q Consensus 5 v~~~p~p~~GH~-~P~l~La~~La~~G~~Vt~it 37 (216)
+++-|.|+.=|+ .|.=+++..|.+.|.++..+.
T Consensus 36 ~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 36 VAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 677788898888 689999999999998766554
No 317
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=20.57 E-value=5.2e+02 Score=21.79 Aligned_cols=48 Identities=21% Similarity=0.126 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhhcCCCCceEEEeCCCCcc--HHHHHHHhCCCceeecccch
Q 042896 82 SRTLSELIKRYKNSSFPVNCVVYDSFLPW--ALDVAKEYGLYGAAFFTNSA 130 (216)
Q Consensus 82 ~~~l~~~l~~~~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~~~~a 130 (216)
.+.-++.++++.+. .+|.+||++-+... ...+|++.++|.+.....+.
T Consensus 68 ~~~r~~~~~~l~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t~ 117 (308)
T PRK05428 68 EEERKERLKKLFSL-EPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLSTT 117 (308)
T ss_pred HHHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcHH
Confidence 34445566666543 35778899987754 46999999999987655443
No 318
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.55 E-value=2.2e+02 Score=19.59 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=25.2
Q ss_pred CCCccChHHHHHHHHHHHhCCCeEEEEecccc
Q 042896 10 YPSQGHINPLLQFAKRLASKGVKATLATTHYT 41 (216)
Q Consensus 10 ~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~ 41 (216)
+-..|+--.++++++.+.++|..+..+|....
T Consensus 67 iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 67 ISFSGETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 33557777899999999999999888887644
No 319
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=20.52 E-value=2.6e+02 Score=22.32 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCceEEEeCCCCcc--HH-HHHHHhCCCceeecc
Q 042896 83 RTLSELIKRYKNSSFPVNCVVYDSFLPW--AL-DVAKEYGLYGAAFFT 127 (216)
Q Consensus 83 ~~l~~~l~~~~~~~~~~d~vI~D~~~~~--~~-~vA~~lgiP~v~f~~ 127 (216)
+.+.+.-+++.+ .+.|+||.|++-+- -. .+++..|+|.+.-.+
T Consensus 165 ~~l~~Aa~~L~~--~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 165 EELAAAARELAE--QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred HHHHHHHHHHHh--cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHH
Confidence 344444455543 25799999997653 33 567889999987544
No 320
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=20.51 E-value=99 Score=25.57 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCeEEEEecc
Q 042896 20 LQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 20 l~La~~La~~G~~Vt~it~~ 39 (216)
..||+.|.+.|..||+++-.
T Consensus 150 ~~la~eL~~~GI~vtlI~Ds 169 (275)
T PRK08335 150 LALANELEFLGIEFEVITDA 169 (275)
T ss_pred HHHHHHHHHCCCCEEEEecc
Confidence 45799999999999987543
No 321
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=20.41 E-value=1.1e+02 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.5
Q ss_pred cChHHHHHHHHHHHhCCCeEEEEeccc
Q 042896 14 GHINPLLQFAKRLASKGVKATLATTHY 40 (216)
Q Consensus 14 GH~~P~l~La~~La~~G~~Vt~it~~~ 40 (216)
||..+.+...+.|.+.|+++.+.....
T Consensus 15 G~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 15 GHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 999998889999998999998887654
No 322
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.38 E-value=1.1e+02 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=19.3
Q ss_pred CccChHHHHHHHHHHHhCCCeEEEEecc
Q 042896 12 SQGHINPLLQFAKRLASKGVKATLATTH 39 (216)
Q Consensus 12 ~~GH~~P~l~La~~La~~G~~Vt~it~~ 39 (216)
+.|.+- .++++.|+++|++|+.+...
T Consensus 13 asg~iG--~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 13 ASSGIG--EGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred CCChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 344443 68999999999998877653
No 323
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.36 E-value=2.7e+02 Score=20.98 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=18.7
Q ss_pred CceEEEeCCCCcc------HHHHHHHhCCCceeecc
Q 042896 98 PVNCVVYDSFLPW------ALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 98 ~~d~vI~D~~~~~------~~~vA~~lgiP~v~f~~ 127 (216)
+| +||...-..| ...+|+++|+|.+.-..
T Consensus 29 RP-vIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 29 RP-LLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred Cc-EEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 45 5666654422 34678899999987543
No 324
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=20.10 E-value=6.5e+02 Score=22.71 Aligned_cols=58 Identities=9% Similarity=0.017 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcCCCCceEEEeCCCC-----ccHHHHHHHhCCCceeecc
Q 042896 70 EDLYLKSFEDNGSRTLSELIKRYKNSSFPVNCVVYDSFL-----PWALDVAKEYGLYGAAFFT 127 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~vI~D~~~-----~~~~~vA~~lgiP~v~f~~ 127 (216)
...+.+.......-.++..++.+.+.+.+++.|+...-. .|.+..|.-+|+|....-.
T Consensus 407 ~~~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~ 469 (536)
T TIGR01234 407 APLLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS 469 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC
Confidence 334444444333334455555554333345656555433 5999999999999976654
No 325
>PRK05973 replicative DNA helicase; Provisional
Probab=20.01 E-value=1.8e+02 Score=23.40 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=34.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhCCCeEEEEeccccccc
Q 042896 5 VVLLPYPSQGHINPLLQFAKRLASKGVKATLATTHYTAKS 44 (216)
Q Consensus 5 v~~~p~p~~GH~~P~l~La~~La~~G~~Vt~it~~~~~~~ 44 (216)
+++..-||.|=-+=.++++...+.+|..|.|++.+.....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~ 106 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQD 106 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Confidence 6777888999999999999999999999999998766543
Done!