Query 042897
Match_columns 208
No_of_seqs 131 out of 1660
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 10:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1515 Arylacetamide deacetyl 100.0 1.9E-33 4.1E-38 215.0 20.3 195 1-207 90-335 (336)
2 PRK10162 acetyl esterase; Prov 100.0 8.1E-32 1.8E-36 208.5 20.2 192 1-207 81-315 (318)
3 COG0657 Aes Esterase/lipase [L 100.0 5.5E-30 1.2E-34 198.3 20.4 189 1-206 79-309 (312)
4 PF07859 Abhydrolase_3: alpha/ 100.0 1.8E-30 3.8E-35 190.4 13.7 165 4-184 1-210 (211)
5 COG1506 DAP2 Dipeptidyl aminop 99.9 1.8E-23 4E-28 174.6 15.7 185 1-207 394-616 (620)
6 PRK10566 esterase; Provisional 99.9 2.9E-21 6.3E-26 145.0 14.7 180 1-207 27-248 (249)
7 KOG1455 Lysophospholipase [Lip 99.9 3.6E-21 7.9E-26 142.3 12.6 184 2-207 55-312 (313)
8 PF00326 Peptidase_S9: Prolyl 99.9 1.1E-21 2.5E-26 144.0 9.7 165 25-207 5-209 (213)
9 KOG4627 Kynurenine formamidase 99.8 2.6E-20 5.6E-25 130.1 12.0 162 2-186 68-250 (270)
10 PF01738 DLH: Dienelactone hyd 99.8 7.8E-20 1.7E-24 134.7 10.8 181 1-207 14-217 (218)
11 PLN02385 hydrolase; alpha/beta 99.8 3.9E-19 8.5E-24 139.8 15.2 185 1-207 87-345 (349)
12 PLN02298 hydrolase, alpha/beta 99.8 2.5E-18 5.4E-23 134.3 17.7 184 2-207 60-317 (330)
13 PRK11460 putative hydrolase; P 99.8 2.4E-18 5.2E-23 127.7 14.6 106 81-206 100-207 (232)
14 TIGR02821 fghA_ester_D S-formy 99.8 8.1E-18 1.8E-22 128.1 17.7 182 1-207 42-274 (275)
15 KOG4388 Hormone-sensitive lipa 99.8 1.6E-18 3.6E-23 137.5 13.7 93 3-105 398-490 (880)
16 COG1647 Esterase/lipase [Gener 99.8 3.6E-19 7.8E-24 125.9 8.3 174 3-206 17-243 (243)
17 PRK13604 luxD acyl transferase 99.8 7.6E-18 1.6E-22 127.5 14.4 159 2-185 38-247 (307)
18 PLN02442 S-formylglutathione h 99.8 2.2E-17 4.8E-22 126.1 15.7 168 1-184 47-264 (283)
19 PHA02857 monoglyceride lipase; 99.8 1.5E-17 3.2E-22 126.7 14.7 179 2-207 26-273 (276)
20 PF12695 Abhydrolase_5: Alpha/ 99.8 8.6E-18 1.9E-22 115.8 11.8 143 3-182 1-145 (145)
21 PF02230 Abhydrolase_2: Phosph 99.8 7E-18 1.5E-22 124.1 11.9 112 81-207 102-215 (216)
22 COG0412 Dienelactone hydrolase 99.8 5.1E-17 1.1E-21 120.4 16.0 179 2-207 28-233 (236)
23 PRK10749 lysophospholipase L2; 99.8 2.1E-17 4.6E-22 129.0 13.8 72 134-208 256-330 (330)
24 PLN02652 hydrolase; alpha/beta 99.7 2E-16 4.4E-21 125.6 17.7 178 2-207 137-387 (395)
25 KOG4391 Predicted alpha/beta h 99.7 9E-18 1.9E-22 118.5 8.3 180 1-207 78-282 (300)
26 COG0400 Predicted esterase [Ge 99.7 2E-16 4.4E-21 114.0 13.8 172 2-207 19-205 (207)
27 PRK10115 protease 2; Provision 99.7 2E-16 4.4E-21 133.4 16.0 163 1-182 445-653 (686)
28 PF10340 DUF2424: Protein of u 99.7 3.9E-16 8.6E-21 120.6 15.6 167 2-184 123-351 (374)
29 TIGR01840 esterase_phb esteras 99.7 1.3E-16 2.9E-21 117.0 11.4 150 1-165 13-197 (212)
30 TIGR03611 RutD pyrimidine util 99.7 1.4E-15 2.9E-20 114.0 16.4 173 1-206 13-257 (257)
31 PRK10985 putative hydrolase; P 99.7 1.3E-15 2.9E-20 118.6 16.5 88 1-105 58-152 (324)
32 KOG1552 Predicted alpha/beta h 99.7 3E-16 6.4E-21 114.2 11.6 174 1-205 60-250 (258)
33 PRK00870 haloalkane dehalogena 99.7 8.7E-16 1.9E-20 118.5 15.1 177 2-207 47-301 (302)
34 PLN02511 hydrolase 99.7 2.2E-15 4.7E-20 119.9 16.6 88 1-105 100-194 (388)
35 TIGR01250 pro_imino_pep_2 prol 99.7 4E-15 8.7E-20 113.1 17.2 86 2-105 26-117 (288)
36 PRK05077 frsA fermentation/res 99.7 6.7E-15 1.5E-19 117.8 18.4 176 1-207 194-412 (414)
37 TIGR02427 protocat_pcaD 3-oxoa 99.7 3.8E-15 8.3E-20 110.8 15.2 173 1-205 13-251 (251)
38 PLN02824 hydrolase, alpha/beta 99.7 6.7E-15 1.4E-19 113.1 16.5 65 133-207 230-294 (294)
39 TIGR03695 menH_SHCHC 2-succiny 99.7 6.1E-15 1.3E-19 109.5 15.8 85 1-105 1-91 (251)
40 PRK10673 acyl-CoA esterase; Pr 99.7 1.3E-14 2.7E-19 109.2 16.9 175 2-207 17-255 (255)
41 PLN00021 chlorophyllase 99.7 1.2E-14 2.7E-19 111.9 16.6 168 1-184 52-242 (313)
42 KOG2100 Dipeptidyl aminopeptid 99.7 5.1E-15 1.1E-19 125.7 15.4 189 1-207 526-747 (755)
43 COG2267 PldB Lysophospholipase 99.7 8.6E-15 1.9E-19 112.2 15.4 183 2-207 35-294 (298)
44 TIGR03343 biphenyl_bphD 2-hydr 99.6 1.5E-14 3.3E-19 110.3 16.5 176 2-206 31-282 (282)
45 PRK11071 esterase YqiA; Provis 99.6 2.9E-14 6.3E-19 102.6 16.7 160 2-205 2-189 (190)
46 TIGR03056 bchO_mg_che_rel puta 99.6 9.4E-15 2E-19 111.0 14.8 84 2-105 29-116 (278)
47 PLN02965 Probable pheophorbida 99.6 6.7E-14 1.5E-18 105.5 18.6 61 135-207 191-253 (255)
48 PRK11126 2-succinyl-6-hydroxy- 99.6 1.4E-14 2.9E-19 108.2 14.7 86 1-105 2-87 (242)
49 TIGR03100 hydr1_PEP hydrolase, 99.6 2.4E-14 5.1E-19 109.0 16.2 181 2-206 27-274 (274)
50 TIGR02240 PHA_depoly_arom poly 99.6 4.2E-14 9.2E-19 107.8 15.6 173 2-207 26-266 (276)
51 TIGR01738 bioH putative pimelo 99.6 3.4E-14 7.3E-19 105.4 14.6 169 2-204 5-245 (245)
52 KOG2281 Dipeptidyl aminopeptid 99.6 2.4E-14 5.1E-19 115.3 13.7 190 1-206 642-866 (867)
53 PLN02679 hydrolase, alpha/beta 99.6 1.1E-13 2.4E-18 109.3 17.4 67 133-207 288-357 (360)
54 PRK03592 haloalkane dehalogena 99.6 5.8E-14 1.3E-18 108.0 15.4 63 134-207 225-289 (295)
55 COG2945 Predicted hydrolase of 99.6 6.7E-14 1.4E-18 97.4 13.9 173 1-205 28-205 (210)
56 PRK10349 carboxylesterase BioH 99.6 9E-14 2E-18 104.7 15.7 82 2-105 14-95 (256)
57 PRK14875 acetoin dehydrogenase 99.6 6.8E-14 1.5E-18 110.8 14.6 173 2-207 132-371 (371)
58 PRK03204 haloalkane dehalogena 99.6 1.1E-13 2.5E-18 106.0 13.9 84 2-105 35-122 (286)
59 COG2272 PnbA Carboxylesterase 99.6 1.6E-14 3.4E-19 114.0 8.8 94 1-105 94-201 (491)
60 KOG1838 Alpha/beta hydrolase [ 99.6 3.6E-13 7.9E-18 104.8 15.8 184 1-206 125-387 (409)
61 PLN02894 hydrolase, alpha/beta 99.5 5.5E-13 1.2E-17 106.7 16.8 83 2-105 106-197 (402)
62 TIGR01607 PST-A Plasmodium sub 99.5 2.2E-13 4.7E-18 106.4 14.2 59 140-206 272-332 (332)
63 KOG3043 Predicted hydrolase re 99.5 6E-14 1.3E-18 99.8 9.6 160 24-207 57-240 (242)
64 cd00312 Esterase_lipase Estera 99.5 3.2E-14 6.9E-19 116.9 9.1 92 1-104 95-196 (493)
65 COG4099 Predicted peptidase [G 99.5 2.8E-14 6E-19 105.5 7.7 115 81-207 266-385 (387)
66 PLN03087 BODYGUARD 1 domain co 99.5 4.3E-13 9.3E-18 108.5 15.1 62 135-207 416-479 (481)
67 PLN02211 methyl indole-3-aceta 99.5 3.7E-12 8E-17 96.9 19.1 86 1-105 18-108 (273)
68 PLN02578 hydrolase 99.5 1.3E-12 2.8E-17 103.1 16.4 83 2-105 87-173 (354)
69 PF00135 COesterase: Carboxyle 99.5 1.7E-14 3.8E-19 119.5 6.1 95 1-105 125-229 (535)
70 PF12697 Abhydrolase_6: Alpha/ 99.5 3.3E-13 7.1E-18 98.7 11.9 81 4-105 1-87 (228)
71 PF08840 BAAT_C: BAAT / Acyl-C 99.5 3E-13 6.6E-18 99.0 11.1 142 54-207 3-210 (213)
72 PRK06489 hypothetical protein; 99.5 1.2E-12 2.6E-17 103.5 14.7 62 133-207 288-357 (360)
73 TIGR01836 PHA_synth_III_C poly 99.5 9.5E-13 2E-17 103.7 14.1 68 25-105 85-157 (350)
74 KOG2112 Lysophospholipase [Lip 99.5 1.9E-12 4.2E-17 91.5 13.7 113 80-206 89-203 (206)
75 COG0429 Predicted hydrolase of 99.5 1.4E-12 2.9E-17 98.4 13.6 88 1-105 75-169 (345)
76 PRK07581 hypothetical protein; 99.5 2.4E-12 5.2E-17 101.0 15.6 61 134-206 272-335 (339)
77 PLN02872 triacylglycerol lipas 99.5 6.7E-13 1.5E-17 105.4 12.4 88 2-103 75-179 (395)
78 KOG4409 Predicted hydrolase/ac 99.5 3.6E-13 7.7E-18 102.1 10.3 91 2-105 91-181 (365)
79 TIGR01249 pro_imino_pep_1 prol 99.5 8.1E-12 1.8E-16 96.7 16.3 84 2-105 28-116 (306)
80 TIGR01392 homoserO_Ac_trn homo 99.4 2.4E-12 5.1E-17 101.5 12.9 65 133-205 284-351 (351)
81 PF05448 AXE1: Acetyl xylan es 99.4 2E-12 4.3E-17 99.9 12.0 175 1-207 83-320 (320)
82 PRK00175 metX homoserine O-ace 99.4 4.5E-12 9.7E-17 100.8 14.4 67 133-207 305-374 (379)
83 TIGR03101 hydr2_PEP hydrolase, 99.4 2.2E-11 4.7E-16 91.8 16.9 89 1-105 25-120 (266)
84 KOG1454 Predicted hydrolase/ac 99.4 8E-12 1.7E-16 97.0 13.9 59 140-207 266-324 (326)
85 KOG4178 Soluble epoxide hydrol 99.4 1.2E-11 2.7E-16 93.4 14.3 81 2-105 45-134 (322)
86 PF10503 Esterase_phd: Esteras 99.4 1.4E-12 3.1E-17 95.1 9.0 98 1-112 16-125 (220)
87 KOG2984 Predicted hydrolase [G 99.4 3.4E-13 7.4E-18 94.6 5.4 175 4-207 45-276 (277)
88 PLN02980 2-oxoglutarate decarb 99.4 8.4E-12 1.8E-16 114.3 15.8 180 2-207 1372-1639(1655)
89 PLN03084 alpha/beta hydrolase 99.4 2.4E-11 5.1E-16 96.4 15.9 84 2-105 128-218 (383)
90 PRK08775 homoserine O-acetyltr 99.4 1.5E-11 3.3E-16 96.6 12.7 64 133-207 273-339 (343)
91 KOG4667 Predicted esterase [Li 99.4 1.1E-11 2.4E-16 87.9 10.1 157 3-186 35-243 (269)
92 PF05728 UPF0227: Uncharacteri 99.4 1.4E-10 2.9E-15 82.8 15.8 161 4-204 2-186 (187)
93 KOG2564 Predicted acetyltransf 99.4 5.1E-12 1.1E-16 92.9 8.5 85 2-105 75-167 (343)
94 PF12740 Chlorophyllase2: Chlo 99.3 7.4E-11 1.6E-15 87.4 13.9 167 1-182 17-205 (259)
95 COG3571 Predicted hydrolase of 99.3 1.1E-10 2.3E-15 79.2 12.9 179 3-206 16-210 (213)
96 PF03403 PAF-AH_p_II: Platelet 99.3 2E-11 4.3E-16 96.6 10.4 165 1-183 100-316 (379)
97 PRK10439 enterobactin/ferric e 99.3 7.4E-11 1.6E-15 94.3 13.3 167 1-185 209-394 (411)
98 KOG2382 Predicted alpha/beta h 99.3 1.2E-10 2.6E-15 88.0 13.3 86 2-105 53-145 (315)
99 PRK05855 short chain dehydroge 99.3 1E-10 2.2E-15 97.9 13.5 58 136-206 232-291 (582)
100 PF12715 Abhydrolase_7: Abhydr 99.2 6.8E-12 1.5E-16 96.9 4.6 164 1-178 115-343 (390)
101 PF06500 DUF1100: Alpha/beta h 99.2 1.6E-10 3.5E-15 90.7 11.9 89 1-105 190-282 (411)
102 KOG3101 Esterase D [General fu 99.2 9.1E-12 2E-16 88.0 4.0 179 1-187 44-266 (283)
103 PRK05371 x-prolyl-dipeptidyl a 99.2 5.9E-10 1.3E-14 95.5 14.1 173 26-207 271-519 (767)
104 TIGR01838 PHA_synth_I poly(R)- 99.2 1.4E-09 3E-14 89.3 14.8 84 2-100 189-278 (532)
105 KOG1516 Carboxylesterase and r 99.2 8.5E-11 1.8E-15 97.9 7.5 96 1-105 112-216 (545)
106 PRK07868 acyl-CoA synthetase; 99.1 9.5E-10 2.1E-14 97.4 13.8 66 133-207 293-361 (994)
107 TIGR00976 /NonD putative hydro 99.1 2.2E-09 4.9E-14 89.4 14.8 91 1-105 22-118 (550)
108 cd00707 Pancreat_lipase_like P 99.1 4.9E-10 1.1E-14 85.3 9.7 92 1-107 36-135 (275)
109 COG3208 GrsT Predicted thioest 99.1 1.7E-09 3.6E-14 78.7 11.6 151 34-205 33-234 (244)
110 COG3458 Acetyl esterase (deace 99.1 4.7E-10 1E-14 82.4 8.4 160 1-182 83-300 (321)
111 PF08538 DUF1749: Protein of u 99.1 1.3E-10 2.8E-15 87.7 5.0 91 3-105 35-129 (303)
112 PF03583 LIP: Secretory lipase 99.1 6.2E-09 1.3E-13 79.8 14.1 58 139-206 220-280 (290)
113 PRK06765 homoserine O-acetyltr 99.0 3.3E-08 7.1E-13 78.8 16.4 66 134-207 320-388 (389)
114 PF06057 VirJ: Bacterial virul 99.0 7E-09 1.5E-13 73.1 9.7 168 3-206 4-191 (192)
115 PF07224 Chlorophyllase: Chlor 99.0 3.1E-09 6.7E-14 77.9 8.0 167 1-183 46-231 (307)
116 COG4188 Predicted dienelactone 99.0 4E-09 8.6E-14 81.3 9.0 95 1-105 71-180 (365)
117 COG3509 LpqC Poly(3-hydroxybut 99.0 1.4E-09 3E-14 81.1 6.2 102 2-114 62-174 (312)
118 PF02129 Peptidase_S15: X-Pro 98.9 1.9E-09 4E-14 82.1 6.1 93 1-105 20-122 (272)
119 TIGR03230 lipo_lipase lipoprot 98.9 1.4E-08 2.9E-13 81.4 11.1 91 1-105 41-140 (442)
120 PF03959 FSH1: Serine hydrolas 98.9 3.9E-09 8.6E-14 77.3 7.5 162 1-185 4-204 (212)
121 PF06342 DUF1057: Alpha/beta h 98.9 4.3E-08 9.4E-13 73.0 11.1 86 2-105 36-125 (297)
122 KOG3847 Phospholipase A2 (plat 98.9 3.5E-08 7.6E-13 74.1 10.2 164 1-182 118-328 (399)
123 PRK04940 hypothetical protein; 98.8 2.4E-07 5.1E-12 65.2 13.2 106 84-206 60-179 (180)
124 COG2382 Fes Enterochelin ester 98.8 3.9E-08 8.4E-13 73.8 9.1 170 1-186 98-284 (299)
125 COG0627 Predicted esterase [Ge 98.8 5.2E-08 1.1E-12 75.1 9.2 58 140-206 249-310 (316)
126 KOG4389 Acetylcholinesterase/B 98.8 9.4E-09 2E-13 81.4 5.2 90 3-102 137-236 (601)
127 COG1505 Serine proteases of th 98.8 4.6E-08 9.9E-13 79.4 8.9 185 2-207 422-646 (648)
128 PF00561 Abhydrolase_1: alpha/ 98.8 1.7E-08 3.6E-13 74.3 5.8 58 35-105 1-65 (230)
129 PF06821 Ser_hydrolase: Serine 98.7 3.5E-07 7.5E-12 64.6 11.6 145 4-183 1-154 (171)
130 PF00756 Esterase: Putative es 98.7 4.1E-10 9E-15 84.6 -4.0 102 81-185 112-239 (251)
131 TIGR03502 lipase_Pla1_cef extr 98.7 1.2E-07 2.7E-12 80.7 9.0 98 1-105 449-576 (792)
132 COG0596 MhpC Predicted hydrola 98.7 6.1E-06 1.3E-10 61.0 17.4 85 2-105 22-109 (282)
133 COG1770 PtrB Protease II [Amin 98.7 4.7E-07 1E-11 74.4 12.0 166 2-182 449-656 (682)
134 PF00151 Lipase: Lipase; Inte 98.6 2.2E-08 4.8E-13 77.9 3.0 91 1-105 71-171 (331)
135 PF07819 PGAP1: PGAP1-like pro 98.6 3.7E-07 8E-12 67.4 9.1 64 34-105 39-106 (225)
136 KOG2624 Triglyceride lipase-ch 98.5 1.2E-06 2.5E-11 69.6 10.7 87 1-105 73-182 (403)
137 KOG2237 Predicted serine prote 98.5 1.6E-06 3.5E-11 71.1 11.1 169 1-184 470-685 (712)
138 COG4757 Predicted alpha/beta h 98.5 7.2E-07 1.6E-11 64.5 8.0 68 24-104 47-125 (281)
139 PF05677 DUF818: Chlamydia CHL 98.5 8.7E-06 1.9E-10 62.5 13.9 92 4-105 140-236 (365)
140 TIGR01839 PHA_synth_II poly(R) 98.5 7.8E-06 1.7E-10 67.2 13.8 63 26-101 239-305 (560)
141 KOG3253 Predicted alpha/beta h 98.4 1.1E-06 2.4E-11 71.6 8.0 165 2-186 177-349 (784)
142 COG3243 PhaC Poly(3-hydroxyalk 98.4 5E-06 1.1E-10 65.4 10.9 69 24-105 129-202 (445)
143 COG2819 Predicted hydrolase of 98.4 1.1E-05 2.4E-10 60.0 11.4 114 81-205 134-259 (264)
144 PF09752 DUF2048: Uncharacteri 98.4 2.8E-05 6E-10 60.2 13.8 86 1-105 92-196 (348)
145 COG3150 Predicted esterase [Ge 98.3 2.9E-05 6.3E-10 53.5 12.1 108 84-205 59-187 (191)
146 PF01674 Lipase_2: Lipase (cla 98.3 9.3E-07 2E-11 64.7 5.1 82 3-103 3-94 (219)
147 TIGR01849 PHB_depoly_PhaZ poly 98.3 1.1E-05 2.5E-10 64.2 11.5 73 132-207 332-406 (406)
148 PF06028 DUF915: Alpha/beta hy 98.3 2.9E-05 6.3E-10 58.3 12.3 132 53-205 85-253 (255)
149 PF10230 DUF2305: Uncharacteri 98.3 9.3E-06 2E-10 61.6 9.8 92 1-105 2-105 (266)
150 PF02273 Acyl_transf_2: Acyl t 98.3 1.6E-05 3.4E-10 58.2 9.9 160 2-184 31-239 (294)
151 PF00975 Thioesterase: Thioest 98.3 6.6E-06 1.4E-10 60.8 8.3 85 2-105 1-87 (229)
152 PF12048 DUF3530: Protein of u 98.3 2.5E-05 5.5E-10 60.5 11.7 180 2-207 88-309 (310)
153 PF07082 DUF1350: Protein of u 98.2 8.8E-05 1.9E-09 54.7 12.7 164 3-184 18-206 (250)
154 KOG2551 Phospholipase/carboxyh 98.1 1E-05 2.2E-10 58.3 6.1 102 87-206 107-219 (230)
155 COG4814 Uncharacterized protei 98.1 0.00026 5.6E-09 52.2 13.0 40 53-105 118-157 (288)
156 COG3545 Predicted esterase of 98.0 0.00095 2.1E-08 46.6 14.4 92 83-183 58-157 (181)
157 KOG3975 Uncharacterized conser 98.0 0.00014 3.1E-09 53.4 10.8 88 1-105 29-131 (301)
158 PF05057 DUF676: Putative seri 98.0 2.6E-05 5.7E-10 57.4 7.1 40 58-105 60-99 (217)
159 KOG4840 Predicted hydrolases o 98.0 0.00028 6E-09 51.1 11.5 70 22-104 54-127 (299)
160 PF11339 DUF3141: Protein of u 97.8 0.0025 5.5E-08 51.9 14.9 65 31-105 97-161 (581)
161 COG3319 Thioesterase domains o 97.7 0.00032 7E-09 52.7 8.4 84 2-105 1-86 (257)
162 PF11144 DUF2920: Protein of u 97.7 0.0053 1.1E-07 48.8 15.3 44 140-185 295-351 (403)
163 COG3946 VirJ Type IV secretory 97.7 0.00072 1.6E-08 53.2 10.2 152 4-185 263-433 (456)
164 PF05990 DUF900: Alpha/beta hy 97.7 0.00024 5.1E-09 52.9 7.3 86 2-105 19-114 (233)
165 COG4782 Uncharacterized protei 97.7 0.0003 6.6E-09 54.6 7.9 86 2-105 117-212 (377)
166 KOG3724 Negative regulator of 97.6 0.00022 4.9E-09 60.3 7.4 67 35-105 133-203 (973)
167 COG2936 Predicted acyl esteras 97.6 0.0012 2.7E-08 54.5 10.9 65 29-105 75-145 (563)
168 COG2021 MET2 Homoserine acetyl 97.5 0.0028 6.1E-08 49.5 11.6 63 133-206 302-367 (368)
169 PTZ00472 serine carboxypeptida 97.5 0.00095 2.1E-08 54.8 9.3 25 81-105 168-192 (462)
170 PF05705 DUF829: Eukaryotic pr 97.5 0.0032 6.9E-08 47.1 11.5 59 140-204 180-240 (240)
171 COG4947 Uncharacterized protei 97.4 0.00037 7.9E-09 48.4 4.9 109 58-184 88-217 (227)
172 PF12146 Hydrolase_4: Putative 97.4 0.00028 6E-09 43.1 3.6 42 1-48 16-57 (79)
173 COG1073 Hydrolases of the alph 97.3 0.00051 1.1E-08 52.4 5.8 120 82-207 158-297 (299)
174 PF10142 PhoPQ_related: PhoPQ- 97.3 0.021 4.5E-07 45.3 14.5 180 3-206 66-319 (367)
175 PLN02733 phosphatidylcholine-s 97.3 0.00085 1.8E-08 54.5 7.0 68 24-105 111-183 (440)
176 COG1075 LipA Predicted acetylt 97.2 0.00079 1.7E-08 52.9 5.9 85 3-105 61-148 (336)
177 PF05577 Peptidase_S28: Serine 97.2 0.0009 2E-08 54.5 6.4 91 2-105 30-134 (434)
178 PF01764 Lipase_3: Lipase (cla 97.1 0.0015 3.3E-08 44.3 5.6 23 83-105 63-85 (140)
179 PF02450 LCAT: Lecithin:choles 97.1 0.0017 3.7E-08 52.2 6.5 65 26-105 70-140 (389)
180 KOG3967 Uncharacterized conser 97.0 0.0078 1.7E-07 43.5 8.4 90 2-105 102-211 (297)
181 cd00741 Lipase Lipase. Lipase 97.0 0.0023 4.9E-08 44.3 5.6 25 82-106 26-50 (153)
182 PF11187 DUF2974: Protein of u 96.9 0.0017 3.8E-08 47.9 4.9 41 54-105 65-105 (224)
183 PF03096 Ndr: Ndr family; Int 96.9 0.017 3.7E-07 43.9 10.1 65 131-205 213-277 (283)
184 PF11288 DUF3089: Protein of u 96.9 0.003 6.6E-08 45.7 5.5 60 34-105 45-116 (207)
185 PRK10252 entF enterobactin syn 96.9 0.0038 8.2E-08 57.7 7.5 84 2-105 1069-1154(1296)
186 KOG2541 Palmitoyl protein thio 96.6 0.047 1E-06 41.0 10.2 87 4-105 26-113 (296)
187 KOG2931 Differentiation-relate 96.5 0.26 5.7E-06 37.7 14.1 61 135-205 244-304 (326)
188 cd00519 Lipase_3 Lipase (class 96.5 0.0071 1.5E-07 44.8 5.4 24 82-105 126-149 (229)
189 PLN02606 palmitoyl-protein thi 96.3 0.048 1E-06 41.9 8.9 86 4-105 29-116 (306)
190 PF08386 Abhydrolase_4: TAP-li 96.2 0.021 4.6E-07 36.7 5.7 56 140-206 36-93 (103)
191 PLN02454 triacylglycerol lipas 96.2 0.012 2.6E-07 47.1 5.3 21 85-105 229-249 (414)
192 PLN02517 phosphatidylcholine-s 96.1 0.023 5E-07 47.5 6.8 67 24-103 159-232 (642)
193 PF00450 Peptidase_S10: Serine 96.0 0.024 5.2E-07 45.8 6.8 61 140-205 332-414 (415)
194 PF01083 Cutinase: Cutinase; 95.9 0.085 1.8E-06 37.6 8.3 23 82-104 79-101 (179)
195 KOG1553 Predicted alpha/beta h 95.6 0.042 9E-07 42.9 5.8 65 30-105 264-332 (517)
196 PLN00413 triacylglycerol lipas 95.5 0.029 6.3E-07 45.6 5.1 23 82-104 282-304 (479)
197 TIGR03712 acc_sec_asp2 accesso 95.5 0.57 1.2E-05 38.4 12.3 87 2-105 290-378 (511)
198 PF07519 Tannase: Tannase and 95.5 0.056 1.2E-06 44.6 6.9 65 140-207 355-427 (474)
199 PLN02571 triacylglycerol lipas 95.5 0.032 6.9E-07 44.8 5.1 21 85-105 227-247 (413)
200 PLN02633 palmitoyl protein thi 95.4 0.19 4.1E-06 38.9 8.9 86 4-105 28-115 (314)
201 KOG2183 Prolylcarboxypeptidase 95.4 0.053 1.2E-06 43.2 6.0 71 24-105 101-188 (492)
202 PLN03016 sinapoylglucose-malat 95.3 0.13 2.8E-06 42.1 8.2 61 140-206 349-430 (433)
203 PLN02934 triacylglycerol lipas 95.2 0.043 9.4E-07 45.0 5.0 23 82-104 319-341 (515)
204 PLN02408 phospholipase A1 95.1 0.048 1E-06 43.1 5.1 23 84-106 200-222 (365)
205 PLN02162 triacylglycerol lipas 95.1 0.047 1E-06 44.4 5.0 22 83-104 277-298 (475)
206 PLN02209 serine carboxypeptida 95.1 0.14 2.9E-06 42.0 7.7 61 140-206 353-434 (437)
207 PLN02324 triacylglycerol lipas 94.7 0.071 1.5E-06 42.8 5.1 22 84-105 215-236 (415)
208 PLN02753 triacylglycerol lipas 94.7 0.081 1.8E-06 43.7 5.4 23 83-105 311-333 (531)
209 KOG2369 Lecithin:cholesterol a 94.7 0.11 2.3E-06 42.2 6.0 22 84-105 182-203 (473)
210 PLN03037 lipase class 3 family 94.6 0.05 1.1E-06 44.8 4.1 22 84-105 318-339 (525)
211 PLN02310 triacylglycerol lipas 94.6 0.058 1.3E-06 43.3 4.3 22 84-105 209-230 (405)
212 PLN02802 triacylglycerol lipas 94.4 0.087 1.9E-06 43.3 5.1 22 84-105 330-351 (509)
213 COG2939 Carboxypeptidase C (ca 94.4 0.24 5.3E-06 40.6 7.5 45 53-105 175-219 (498)
214 PLN02719 triacylglycerol lipas 94.3 0.11 2.3E-06 42.9 5.3 22 84-105 298-319 (518)
215 PF02089 Palm_thioest: Palmito 94.2 0.18 3.9E-06 38.4 6.0 22 84-105 80-101 (279)
216 KOG2182 Hydrolytic enzymes of 94.2 0.63 1.4E-05 38.2 9.3 93 2-105 87-193 (514)
217 KOG1282 Serine carboxypeptidas 94.2 0.21 4.5E-06 40.9 6.7 25 81-105 165-189 (454)
218 PLN02761 lipase class 3 family 94.1 0.11 2.3E-06 43.0 5.0 22 84-105 294-315 (527)
219 KOG4569 Predicted lipase [Lipi 93.9 0.13 2.8E-06 40.6 5.0 38 55-105 155-192 (336)
220 PF08237 PE-PPE: PE-PPE domain 93.7 0.47 1E-05 35.2 7.4 24 82-105 46-69 (225)
221 PLN02847 triacylglycerol lipas 93.5 0.16 3.5E-06 42.6 5.1 23 83-105 250-272 (633)
222 COG3673 Uncharacterized conser 93.3 2 4.3E-05 33.5 10.1 40 54-105 104-143 (423)
223 smart00824 PKS_TE Thioesterase 93.2 0.72 1.6E-05 32.9 7.8 59 34-105 25-85 (212)
224 PF06259 Abhydrolase_8: Alpha/ 92.3 3 6.5E-05 29.7 10.1 23 82-104 107-129 (177)
225 PF06850 PHB_depo_C: PHB de-po 92.1 0.37 8E-06 34.6 4.6 68 134-207 130-202 (202)
226 COG4553 DepA Poly-beta-hydroxy 91.5 4.9 0.00011 31.1 10.1 62 140-207 341-407 (415)
227 PF12146 Hydrolase_4: Putative 91.2 1.3 2.8E-05 26.9 5.9 61 140-205 18-79 (79)
228 PF03991 Prion_octapep: Copper 90.9 0.096 2.1E-06 17.0 0.3 6 8-13 2-7 (8)
229 COG5153 CVT17 Putative lipase 90.8 0.39 8.3E-06 36.7 3.8 25 81-105 273-297 (425)
230 KOG4540 Putative lipase essent 90.8 0.39 8.3E-06 36.7 3.8 25 81-105 273-297 (425)
231 PF03283 PAE: Pectinacetyleste 90.3 0.47 1E-05 37.8 4.2 41 54-105 137-177 (361)
232 KOG2521 Uncharacterized conser 89.1 10 0.00022 30.2 13.2 61 140-206 227-289 (350)
233 PF09994 DUF2235: Uncharacteri 88.4 0.93 2E-05 34.8 4.5 40 54-105 74-113 (277)
234 PF10605 3HBOH: 3HB-oligomer h 88.1 1.5 3.3E-05 37.1 5.6 67 139-206 556-636 (690)
235 PF05576 Peptidase_S37: PS-10 87.5 0.54 1.2E-05 37.8 2.7 58 140-203 353-410 (448)
236 PLN02213 sinapoylglucose-malat 86.4 2.9 6.3E-05 32.8 6.3 61 140-206 235-316 (319)
237 KOG2029 Uncharacterized conser 85.6 3.3 7.1E-05 35.1 6.3 24 82-105 524-547 (697)
238 PF06500 DUF1100: Alpha/beta h 84.9 2 4.3E-05 34.8 4.7 63 140-206 191-254 (411)
239 PF05277 DUF726: Protein of un 84.3 1.6 3.4E-05 34.6 3.9 25 82-106 218-242 (345)
240 PF12242 Eno-Rase_NADH_b: NAD( 83.7 5.2 0.00011 24.1 5.0 42 53-104 19-60 (78)
241 KOG1551 Uncharacterized conser 81.4 11 0.00023 28.9 7.0 23 83-105 194-216 (371)
242 PF07519 Tannase: Tannase and 80.9 8.9 0.00019 32.0 7.2 68 29-106 54-137 (474)
243 TIGR00632 vsr DNA mismatch end 80.8 3.4 7.4E-05 27.2 3.8 39 2-40 57-113 (117)
244 COG4822 CbiK Cobalamin biosynt 74.1 6 0.00013 29.0 3.8 113 54-181 117-241 (265)
245 PRK05077 frsA fermentation/res 73.0 27 0.00059 28.6 7.9 63 140-206 195-258 (414)
246 KOG2872 Uroporphyrinogen decar 66.2 25 0.00053 27.3 5.7 32 1-45 252-283 (359)
247 TIGR01250 pro_imino_pep_2 prol 65.8 52 0.0011 24.3 7.8 63 140-206 27-92 (288)
248 cd07224 Pat_like Patatin-like 63.7 12 0.00026 27.9 3.9 25 81-105 26-50 (233)
249 PF10686 DUF2493: Protein of u 63.7 20 0.00043 21.2 4.0 32 2-40 32-63 (71)
250 PRK05282 (alpha)-aspartyl dipe 62.8 61 0.0013 24.3 7.3 39 2-43 32-70 (233)
251 PF12122 DUF3582: Protein of u 61.8 24 0.00051 22.6 4.3 49 154-206 12-60 (101)
252 COG3340 PepE Peptidase E [Amin 61.6 17 0.00036 26.8 4.0 16 84-99 117-132 (224)
253 COG0431 Predicted flavoprotein 61.3 43 0.00094 23.9 6.2 29 81-109 98-126 (184)
254 PF01583 APS_kinase: Adenylyls 61.0 35 0.00077 23.8 5.5 38 1-42 1-38 (156)
255 COG4075 Uncharacterized conser 60.9 29 0.00063 21.9 4.4 43 26-68 19-64 (110)
256 PF10081 Abhydrolase_9: Alpha/ 59.9 22 0.00047 27.5 4.5 63 34-103 61-128 (289)
257 KOG4372 Predicted alpha/beta h 59.5 19 0.00041 29.2 4.3 18 83-100 149-166 (405)
258 KOG1202 Animal-type fatty acid 58.7 63 0.0014 30.8 7.6 79 2-105 2124-2203(2376)
259 KOG3035 Isoamyl acetate-hydrol 58.1 54 0.0012 24.3 6.1 66 82-150 5-81 (245)
260 TIGR02240 PHA_depoly_arom poly 56.3 84 0.0018 23.6 7.6 61 140-206 27-87 (276)
261 KOG1455 Lysophospholipase [Lip 54.9 1E+02 0.0022 24.2 7.4 63 140-206 56-119 (313)
262 COG0529 CysC Adenylylsulfate k 54.6 79 0.0017 22.8 13.1 39 1-43 22-60 (197)
263 PF10561 UPF0565: Uncharacteri 54.0 1.1E+02 0.0023 24.1 7.8 83 81-178 190-275 (303)
264 PF03575 Peptidase_S51: Peptid 54.0 16 0.00035 25.2 2.9 21 24-44 3-23 (154)
265 PF05577 Peptidase_S28: Serine 53.9 30 0.00064 28.4 4.9 44 139-189 377-420 (434)
266 KOG4127 Renal dipeptidase [Pos 53.8 67 0.0015 25.8 6.3 78 3-94 268-345 (419)
267 cd07207 Pat_ExoU_VipD_like Exo 52.9 23 0.0005 25.2 3.7 20 86-105 29-48 (194)
268 cd07198 Patatin Patatin-like p 52.8 24 0.00052 24.7 3.7 21 85-105 27-47 (172)
269 cd07212 Pat_PNPLA9 Patatin-lik 52.0 12 0.00027 29.2 2.3 19 87-105 35-53 (312)
270 PRK10824 glutaredoxin-4; Provi 51.5 67 0.0015 21.1 7.4 78 2-105 16-93 (115)
271 PRK06852 aldolase; Validated 50.7 1.1E+02 0.0024 24.1 7.1 44 1-44 168-211 (304)
272 TIGR02690 resist_ArsH arsenica 50.5 62 0.0014 24.0 5.6 21 23-43 46-66 (219)
273 cd07230 Pat_TGL4-5_like Triacy 49.4 26 0.00056 28.8 3.8 19 87-105 104-122 (421)
274 COG2267 PldB Lysophospholipase 49.4 82 0.0018 24.5 6.4 62 140-206 36-99 (298)
275 PLN02385 hydrolase; alpha/beta 47.7 1.4E+02 0.003 23.6 7.7 62 140-205 89-151 (349)
276 PF04301 DUF452: Protein of un 47.3 18 0.0004 26.6 2.4 22 84-105 57-78 (213)
277 cd07211 Pat_PNPLA8 Patatin-lik 46.1 16 0.00035 28.4 2.1 17 87-103 44-60 (308)
278 cd07210 Pat_hypo_W_succinogene 45.9 38 0.00082 25.0 3.9 19 87-105 31-49 (221)
279 cd03015 PRX_Typ2cys Peroxiredo 45.7 38 0.00083 23.7 3.8 41 2-42 31-71 (173)
280 KOG1252 Cystathionine beta-syn 45.7 29 0.00062 27.5 3.3 19 84-102 303-321 (362)
281 cd07205 Pat_PNPLA6_PNPLA7_NTE1 45.4 39 0.00084 23.7 3.8 19 87-105 31-49 (175)
282 PRK10382 alkyl hydroperoxide r 45.3 38 0.00082 24.3 3.7 41 1-41 32-72 (187)
283 cd02011 TPP_PK Thiamine pyroph 45.0 82 0.0018 23.5 5.5 59 4-67 116-176 (227)
284 PRK10279 hypothetical protein; 44.9 35 0.00076 26.6 3.7 20 85-104 34-53 (300)
285 PRK13599 putative peroxiredoxi 44.7 39 0.00085 24.9 3.8 41 2-42 30-70 (215)
286 cd03016 PRX_1cys Peroxiredoxin 43.7 38 0.00083 24.6 3.6 42 2-43 27-68 (203)
287 KOG1283 Serine carboxypeptidas 43.4 93 0.002 24.8 5.6 25 81-105 119-143 (414)
288 PF12697 Abhydrolase_6: Alpha/ 43.2 1.1E+02 0.0024 21.3 7.3 61 141-207 1-63 (228)
289 PRK13191 putative peroxiredoxi 43.2 41 0.0009 24.7 3.8 42 2-43 35-76 (215)
290 PF14253 AbiH: Bacteriophage a 43.2 14 0.0003 28.0 1.3 16 81-96 232-247 (270)
291 KOG2385 Uncharacterized conser 42.8 50 0.0011 27.9 4.4 25 81-105 444-468 (633)
292 PF13478 XdhC_C: XdhC Rossmann 42.1 59 0.0013 22.0 4.1 21 23-43 10-30 (136)
293 PRK15000 peroxidase; Provision 42.0 45 0.00097 24.2 3.8 41 2-42 36-76 (200)
294 PF04083 Abhydro_lipase: Parti 41.8 16 0.00036 21.0 1.2 9 1-9 43-51 (63)
295 PF10126 Nit_Regul_Hom: Unchar 41.7 85 0.0018 20.3 4.4 58 26-98 19-79 (110)
296 cd07228 Pat_NTE_like_bacteria 41.6 23 0.0005 24.9 2.2 20 86-105 30-49 (175)
297 cd07218 Pat_iPLA2 Calcium-inde 41.5 46 0.001 25.1 3.8 18 88-105 34-51 (245)
298 cd07209 Pat_hypo_Ecoli_Z1214_l 41.3 46 0.001 24.4 3.8 20 86-105 28-47 (215)
299 PF06309 Torsin: Torsin; Inte 41.1 44 0.00096 22.4 3.3 11 1-11 52-62 (127)
300 smart00827 PKS_AT Acyl transfe 40.7 51 0.0011 25.3 4.2 19 85-103 83-101 (298)
301 PLN02213 sinapoylglucose-malat 40.5 1.1E+02 0.0024 24.0 6.0 25 81-105 48-72 (319)
302 cd00382 beta_CA Carbonic anhyd 40.1 46 0.00099 21.9 3.3 31 56-99 44-74 (119)
303 cd07216 Pat17_PNPLA8_PNPLA9_li 40.1 20 0.00043 28.0 1.8 17 87-103 45-61 (309)
304 cd07213 Pat17_PNPLA8_PNPLA9_li 39.8 26 0.00056 27.1 2.3 19 87-105 37-55 (288)
305 cd07204 Pat_PNPLA_like Patatin 39.6 49 0.0011 24.8 3.8 20 86-105 33-52 (243)
306 COG4287 PqaA PhoPQ-activated p 39.6 65 0.0014 26.1 4.4 40 140-184 331-372 (507)
307 PLN02298 hydrolase, alpha/beta 39.6 1.8E+02 0.0039 22.6 7.4 62 140-205 61-123 (330)
308 cd07217 Pat17_PNPLA8_PNPLA9_li 39.4 25 0.00055 28.0 2.3 18 87-104 44-61 (344)
309 PF08250 Sperm_act_pep: Sperm- 39.3 8.6 0.00019 13.4 -0.2 6 90-95 1-6 (10)
310 PF00698 Acyl_transf_1: Acyl t 38.8 39 0.00085 26.4 3.3 43 154-206 167-209 (318)
311 PF04260 DUF436: Protein of un 38.7 44 0.00096 23.5 3.0 27 56-93 2-28 (172)
312 cd03013 PRX5_like Peroxiredoxi 37.9 96 0.0021 21.3 4.8 41 2-42 31-73 (155)
313 cd07222 Pat_PNPLA4 Patatin-lik 37.9 49 0.0011 24.9 3.5 17 87-103 34-50 (246)
314 TIGR03137 AhpC peroxiredoxin. 37.8 48 0.001 23.7 3.4 40 2-41 33-72 (187)
315 PRK03592 haloalkane dehalogena 37.7 1.8E+02 0.0039 22.0 7.9 61 140-206 29-89 (295)
316 cd07214 Pat17_isozyme_like Pat 37.6 23 0.0005 28.2 1.8 17 87-103 46-62 (349)
317 TIGR03131 malonate_mdcH malona 36.9 61 0.0013 24.9 4.0 20 84-103 76-95 (295)
318 PRK00870 haloalkane dehalogena 36.9 1.9E+02 0.0041 22.1 7.6 62 140-206 48-111 (302)
319 cd07199 Pat17_PNPLA8_PNPLA9_li 36.9 29 0.00062 26.2 2.2 18 87-104 37-54 (258)
320 cd07208 Pat_hypo_Ecoli_yjju_li 36.8 32 0.00069 26.1 2.4 19 87-105 30-48 (266)
321 PLN02578 hydrolase 36.6 2E+02 0.0043 22.8 7.0 61 140-206 88-148 (354)
322 PF01734 Patatin: Patatin-like 36.6 32 0.00069 23.9 2.3 21 84-104 27-47 (204)
323 COG1752 RssA Predicted esteras 36.6 57 0.0012 25.4 3.8 22 84-105 39-60 (306)
324 cd07225 Pat_PNPLA6_PNPLA7 Pata 36.4 57 0.0012 25.5 3.8 19 86-104 45-63 (306)
325 cd00883 beta_CA_cladeA Carboni 36.3 57 0.0012 23.3 3.5 34 56-102 66-99 (182)
326 TIGR03282 methan_mark_13 putat 36.3 1.1E+02 0.0025 24.4 5.3 12 3-14 20-31 (352)
327 COG3727 Vsr DNA G:T-mismatch r 36.0 22 0.00048 23.9 1.2 13 2-14 58-70 (150)
328 KOG2853 Possible oxidoreductas 35.8 1.2E+02 0.0026 24.6 5.3 46 23-68 102-161 (509)
329 KOG1282 Serine carboxypeptidas 35.8 1.5E+02 0.0033 24.8 6.2 63 140-207 365-448 (454)
330 COG0331 FabD (acyl-carrier-pro 35.8 59 0.0013 25.5 3.7 23 82-104 83-105 (310)
331 PLN03006 carbonate dehydratase 35.6 53 0.0012 25.6 3.4 32 57-101 158-189 (301)
332 TIGR01440 conserved hypothetic 35.4 62 0.0014 22.8 3.3 27 56-93 2-28 (172)
333 TIGR03100 hydr1_PEP hydrolase, 35.1 2E+02 0.0043 21.8 7.6 40 140-183 28-70 (274)
334 cd01819 Patatin_and_cPLA2 Pata 34.6 78 0.0017 21.8 3.9 19 84-102 28-46 (155)
335 PF08373 RAP: RAP domain; Int 34.5 81 0.0018 17.3 3.3 21 23-43 20-40 (58)
336 KOG2214 Predicted esterase of 34.2 23 0.0005 29.6 1.3 21 85-105 203-223 (543)
337 PRK13690 hypothetical protein; 34.0 59 0.0013 23.2 3.1 30 53-93 6-35 (184)
338 cd07215 Pat17_PNPLA8_PNPLA9_li 34.0 32 0.00069 27.1 2.1 16 87-102 43-58 (329)
339 PTZ00137 2-Cys peroxiredoxin; 33.4 75 0.0016 24.3 3.9 41 2-42 100-140 (261)
340 cd00884 beta_CA_cladeB Carboni 33.4 68 0.0015 23.2 3.5 33 57-102 73-105 (190)
341 PF03853 YjeF_N: YjeF-related 33.0 71 0.0015 22.4 3.5 55 2-67 26-80 (169)
342 KOG1752 Glutaredoxin and relat 32.7 1.4E+02 0.003 19.2 7.0 64 22-104 26-89 (104)
343 PF14258 DUF4350: Domain of un 32.7 93 0.002 17.9 3.5 50 155-206 7-62 (70)
344 PLN00416 carbonate dehydratase 31.9 71 0.0015 24.4 3.5 34 56-102 125-158 (258)
345 PRK10673 acyl-CoA esterase; Pr 31.9 2E+02 0.0044 20.9 7.3 60 140-206 18-77 (255)
346 cd04251 AAK_NAGK-UC AAK_NAGK-U 31.6 81 0.0018 23.9 3.8 26 4-41 27-52 (257)
347 cd07232 Pat_PLPL Patain-like p 31.6 74 0.0016 26.1 3.8 19 87-105 98-116 (407)
348 cd07227 Pat_Fungal_NTE1 Fungal 31.5 40 0.00087 25.8 2.2 19 86-104 40-58 (269)
349 cd03789 GT1_LPS_heptosyltransf 31.4 2.3E+02 0.005 21.4 8.9 16 84-99 199-214 (279)
350 TIGR00128 fabD malonyl CoA-acy 31.1 40 0.00087 25.7 2.2 20 84-103 83-102 (290)
351 PF05990 DUF900: Alpha/beta hy 30.6 2.3E+02 0.0049 21.1 6.8 65 140-205 20-84 (233)
352 KOG4231 Intracellular membrane 30.6 59 0.0013 27.5 3.0 19 87-105 453-471 (763)
353 PRK13936 phosphoheptose isomer 30.6 1.3E+02 0.0029 21.6 4.7 24 81-104 41-64 (197)
354 PF10230 DUF2305: Uncharacteri 30.5 1.1E+02 0.0024 23.3 4.4 42 140-184 223-266 (266)
355 PLN02752 [acyl-carrier protein 30.4 87 0.0019 24.8 4.0 17 87-103 127-143 (343)
356 PLN02154 carbonic anhydrase 30.3 81 0.0018 24.5 3.6 34 56-102 151-184 (290)
357 PTZ00062 glutaredoxin; Provisi 29.7 2.3E+02 0.0049 20.8 7.9 77 2-104 114-190 (204)
358 cd07229 Pat_TGL3_like Triacylg 29.6 83 0.0018 25.7 3.7 19 87-105 114-132 (391)
359 TIGR02964 xanthine_xdhC xanthi 29.3 93 0.002 23.5 3.8 31 4-43 102-132 (246)
360 KOG0256 1-aminocyclopropane-1- 29.3 3.3E+02 0.0072 22.6 10.4 109 81-207 144-258 (471)
361 PF00484 Pro_CA: Carbonic anhy 29.1 1.5E+02 0.0032 20.2 4.6 36 54-102 38-73 (153)
362 PRK13189 peroxiredoxin; Provis 29.0 92 0.002 23.0 3.7 41 2-42 37-77 (222)
363 PLN03014 carbonic anhydrase 28.9 73 0.0016 25.4 3.2 33 57-102 206-238 (347)
364 COG2201 CheB Chemotaxis respon 28.8 60 0.0013 26.0 2.8 25 81-105 154-178 (350)
365 PF01075 Glyco_transf_9: Glyco 28.8 2.4E+02 0.0052 20.7 6.5 20 84-103 184-203 (247)
366 COG0505 CarA Carbamoylphosphat 28.7 2.5E+02 0.0054 22.7 6.0 61 26-100 193-265 (368)
367 PF05576 Peptidase_S37: PS-10 28.3 1.2E+02 0.0025 25.1 4.2 78 1-100 63-150 (448)
368 cd01523 RHOD_Lact_B Member of 28.0 1.5E+02 0.0032 18.2 4.1 13 26-38 77-89 (100)
369 PF05687 DUF822: Plant protein 28.0 78 0.0017 21.7 2.8 16 23-38 48-63 (150)
370 PRK15219 carbonic anhydrase; P 27.9 94 0.002 23.5 3.6 34 55-101 127-160 (245)
371 PTZ00253 tryparedoxin peroxida 27.9 1E+02 0.0023 22.2 3.8 41 2-42 38-78 (199)
372 COG0288 CynT Carbonic anhydras 27.8 74 0.0016 23.4 2.9 36 55-103 76-111 (207)
373 TIGR00365 monothiol glutaredox 27.8 1.6E+02 0.0035 18.4 7.8 76 2-103 13-88 (97)
374 PLN03019 carbonic anhydrase 27.8 74 0.0016 25.2 3.0 33 57-102 201-233 (330)
375 KOG4022 Dihydropteridine reduc 27.6 2.3E+02 0.005 20.2 5.4 22 24-45 17-38 (236)
376 cd07231 Pat_SDP1-like Sugar-De 27.6 1E+02 0.0022 24.4 3.8 19 87-105 99-117 (323)
377 cd07220 Pat_PNPLA2 Patatin-lik 27.5 98 0.0021 23.4 3.6 20 86-105 38-57 (249)
378 cd03028 GRX_PICOT_like Glutare 27.4 1.5E+02 0.0033 18.1 7.8 75 2-102 9-83 (90)
379 PF09370 TIM-br_sig_trns: TIM- 27.4 2.9E+02 0.0063 21.3 7.5 91 85-181 14-120 (268)
380 PF09587 PGA_cap: Bacterial ca 27.3 1.2E+02 0.0026 22.8 4.1 16 26-41 208-223 (250)
381 cd07206 Pat_TGL3-4-5_SDP1 Tria 26.8 1.1E+02 0.0024 23.9 3.8 19 87-105 100-118 (298)
382 TIGR03607 patatin-related prot 26.8 49 0.0011 29.4 2.1 18 86-103 68-85 (739)
383 PLN02652 hydrolase; alpha/beta 26.8 3.5E+02 0.0076 22.0 7.1 61 140-205 138-199 (395)
384 PF04914 DltD_C: DltD C-termin 26.7 85 0.0018 21.1 2.9 52 154-207 37-88 (130)
385 cd03018 PRX_AhpE_like Peroxire 26.6 97 0.0021 20.7 3.3 41 2-42 30-70 (149)
386 PRK00414 gmhA phosphoheptose i 26.4 1.8E+02 0.004 20.9 4.8 39 54-104 27-65 (192)
387 TIGR01607 PST-A Plasmodium sub 26.3 3.2E+02 0.007 21.5 6.5 47 156-206 64-114 (332)
388 COG4635 HemG Flavodoxin [Energ 26.3 1.8E+02 0.0038 20.6 4.3 35 140-176 2-37 (175)
389 PRK13190 putative peroxiredoxi 26.1 1.1E+02 0.0025 22.1 3.7 41 2-42 29-69 (202)
390 TIGR03127 RuMP_HxlB 6-phospho 26.0 1.9E+02 0.0041 20.3 4.8 21 84-104 31-51 (179)
391 COG2074 2-phosphoglycerate kin 26.0 1.5E+02 0.0033 22.8 4.3 60 1-67 88-154 (299)
392 cd01521 RHOD_PspE2 Member of t 26.0 1.8E+02 0.0039 18.4 4.3 32 2-41 66-97 (110)
393 TIGR02201 heptsyl_trn_III lipo 25.8 3E+02 0.0065 21.6 6.3 20 83-102 260-279 (344)
394 COG3007 Uncharacterized paraqu 25.5 1.8E+02 0.0039 22.9 4.6 44 53-105 20-63 (398)
395 PF11713 Peptidase_C80: Peptid 25.5 90 0.002 21.7 2.9 16 81-96 101-116 (157)
396 PRK10437 carbonic anhydrase; P 25.4 1.2E+02 0.0027 22.5 3.7 34 56-102 76-109 (220)
397 KOG1533 Predicted GTPase [Gene 25.3 3.1E+02 0.0068 21.0 5.7 50 21-70 17-94 (290)
398 PRK14875 acetoin dehydrogenase 25.1 3.4E+02 0.0073 21.3 7.2 61 140-206 133-193 (371)
399 PF05116 S6PP: Sucrose-6F-phos 24.9 67 0.0015 24.1 2.4 58 24-93 134-191 (247)
400 PRK14194 bifunctional 5,10-met 24.7 1.6E+02 0.0035 23.1 4.4 25 81-105 157-183 (301)
401 PRK10964 ADP-heptose:LPS hepto 24.7 3.4E+02 0.0073 21.1 9.5 37 2-40 179-216 (322)
402 COG1225 Bcp Peroxiredoxin [Pos 24.6 1.5E+02 0.0032 20.8 3.8 40 2-41 32-71 (157)
403 PRK13938 phosphoheptose isomer 24.6 2.2E+02 0.0047 20.7 4.9 24 82-105 44-67 (196)
404 COG1856 Uncharacterized homolo 24.4 1.9E+02 0.0041 21.8 4.4 64 28-103 104-176 (275)
405 PLN02824 hydrolase, alpha/beta 23.8 3.2E+02 0.007 20.6 7.7 61 140-206 31-98 (294)
406 PRK09437 bcp thioredoxin-depen 23.6 1.7E+02 0.0036 19.8 4.1 41 2-42 32-72 (154)
407 PF13676 TIR_2: TIR domain; PD 23.6 1.2E+02 0.0026 18.7 3.1 25 141-167 1-25 (102)
408 PLN02211 methyl indole-3-aceta 23.6 3.3E+02 0.0072 20.6 7.6 62 140-206 20-82 (273)
409 PHA01735 hypothetical protein 23.5 93 0.002 18.3 2.2 18 50-67 28-45 (76)
410 TIGR03101 hydr2_PEP hydrolase, 23.4 3.4E+02 0.0074 20.7 7.3 41 140-184 27-70 (266)
411 PRK10886 DnaA initiator-associ 23.3 2.4E+02 0.0052 20.5 4.9 24 82-105 40-63 (196)
412 PRK09330 cell division protein 23.2 4.2E+02 0.0091 21.7 7.6 60 3-68 100-160 (384)
413 PRK10749 lysophospholipase L2; 23.2 3.7E+02 0.0079 21.0 7.7 62 140-206 56-123 (330)
414 PF09419 PGP_phosphatase: Mito 23.1 2.8E+02 0.0061 19.6 5.9 52 30-94 36-88 (168)
415 COG1087 GalE UDP-glucose 4-epi 22.7 1.3E+02 0.0028 23.8 3.4 30 5-42 3-32 (329)
416 COG4425 Predicted membrane pro 22.7 4.2E+02 0.009 22.4 6.4 60 30-100 345-413 (588)
417 COG1355 Predicted dioxygenase 22.7 1.8E+02 0.0038 22.6 4.1 40 140-182 156-195 (279)
418 PF00578 AhpC-TSA: AhpC/TSA fa 22.5 58 0.0013 20.9 1.5 43 1-43 26-68 (124)
419 cd03413 CbiK_C Anaerobic cobal 22.5 95 0.0021 19.8 2.4 33 140-174 63-98 (103)
420 PRK13256 thiopurine S-methyltr 22.4 1.3E+02 0.0027 22.5 3.3 17 27-43 58-74 (226)
421 COG3675 Predicted lipase [Lipi 22.4 42 0.00091 26.1 0.8 20 84-103 175-194 (332)
422 PF13124 DUF3963: Protein of u 22.3 1.1E+02 0.0023 15.4 2.0 13 194-206 10-22 (40)
423 PLN03050 pyridoxine (pyridoxam 22.3 2E+02 0.0043 21.8 4.4 33 3-41 62-94 (246)
424 PF04244 DPRP: Deoxyribodipyri 22.2 2.1E+02 0.0045 21.3 4.4 27 153-181 49-75 (224)
425 PLN02564 6-phosphofructokinase 22.2 4.1E+02 0.009 22.5 6.5 43 50-104 228-273 (484)
426 cd02970 PRX_like2 Peroxiredoxi 22.0 1.1E+02 0.0023 20.3 2.8 41 2-42 25-65 (149)
427 PF00698 Acyl_transf_1: Acyl t 21.8 2.2E+02 0.0049 22.1 4.8 21 83-103 83-103 (318)
428 cd03379 beta_CA_cladeD Carboni 21.7 1.2E+02 0.0026 20.6 3.0 31 56-99 41-71 (142)
429 cd01518 RHOD_YceA Member of th 21.7 1.6E+02 0.0036 18.1 3.4 9 28-36 79-87 (101)
430 PRK14058 acetylglutamate/acety 21.7 1.1E+02 0.0025 23.3 3.1 8 4-11 31-38 (268)
431 TIGR02193 heptsyl_trn_I lipopo 21.3 3.9E+02 0.0085 20.6 9.1 20 83-102 254-273 (319)
432 PRK09250 fructose-bisphosphate 21.0 2.4E+02 0.0052 22.7 4.7 22 23-44 219-240 (348)
433 KOG4513 Phosphoglycerate mutas 20.8 4.4E+02 0.0095 21.7 6.0 50 151-207 139-188 (531)
434 COG1830 FbaB DhnA-type fructos 20.7 4E+02 0.0087 20.5 7.1 46 1-46 144-191 (265)
435 cd05005 SIS_PHI Hexulose-6-pho 20.7 2.9E+02 0.0064 19.3 4.9 21 84-104 34-54 (179)
436 cd07221 Pat_PNPLA3 Patatin-lik 20.4 94 0.002 23.6 2.4 20 86-105 34-53 (252)
437 cd00221 Vsr Very Short Patch R 20.4 2.2E+02 0.0047 18.7 3.8 14 27-40 97-110 (115)
438 PF06792 UPF0261: Uncharacteri 20.3 5E+02 0.011 21.5 8.0 73 23-105 17-116 (403)
439 COG0062 Uncharacterized conser 20.3 1.8E+02 0.004 21.3 3.7 32 4-41 52-83 (203)
440 PRK13604 luxD acyl transferase 20.2 4.4E+02 0.0096 20.8 7.5 63 140-207 39-105 (307)
441 PF10137 TIR-like: Predicted n 20.0 2E+02 0.0042 19.2 3.6 24 141-167 2-25 (125)
442 PF14577 SEO_C: Sieve element 20.0 3.9E+02 0.0085 20.2 5.8 37 140-178 34-72 (235)
No 1
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=100.00 E-value=1.9e-33 Score=215.04 Aligned_cols=195 Identities=43% Similarity=0.713 Sum_probs=169.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
+|+|||+|||||..++.....+..+..+++.+.+..|+++|||+.|++++|...+|...+++|+.++. |++.+
T Consensus 90 ~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa~y~D~~~Al~w~~~~~-------~~~~~ 162 (336)
T KOG1515|consen 90 LPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPAAYDDGWAALKWVLKNS-------WLKLG 162 (336)
T ss_pred ceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCccchHHHHHHHHHHHhH-------HHHhC
Confidence 59999999999999998888889999999999999999999999999999999999999999999863 46667
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH---------------------------------------------HHHHhhhccC
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL---------------------------------------------DEMYAYMCPT 115 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~---------------------------------------------~~~~~~~~~~ 115 (208)
.|++||+|+|.|+||++|..++.+. +..|...+|.
T Consensus 163 ~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~w~~~lP~ 242 (336)
T KOG1515|consen 163 ADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQNLNGSPELARPKIDKWWRLLLPN 242 (336)
T ss_pred CCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHhhcCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999877 4455555555
Q ss_pred CC-CCCCCCccCCCC-----CcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCC
Q 042897 116 SA-GFEEDPILNPAL-----DPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPK 189 (208)
Q Consensus 116 ~~-~~~~~~~~~~~~-----~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~ 189 (208)
.. .. .+|..+|.. ......++ |++++.++.|.+.+++..+.++|++.|+ ++++..++++.|+|..+.+.
T Consensus 243 ~~~~~-~~p~~np~~~~~~~d~~~~~lp--~tlv~~ag~D~L~D~~~~Y~~~Lkk~Gv--~v~~~~~e~~~H~~~~~~~~ 317 (336)
T KOG1515|consen 243 GKTDL-DHPFINPVGNSLAKDLSGLGLP--PTLVVVAGYDVLRDEGLAYAEKLKKAGV--EVTLIHYEDGFHGFHILDPS 317 (336)
T ss_pred CCCCc-CCccccccccccccCccccCCC--ceEEEEeCchhhhhhhHHHHHHHHHcCC--eEEEEEECCCeeEEEecCCc
Confidence 44 34 677777743 22234445 8999999999999999999999999998 99999999999999998887
Q ss_pred CCchHHHHHHHHHHHHhc
Q 042897 190 SKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 190 ~~~~~~~~~~i~~fl~~~ 207 (208)
.+...+.++++.+|+++.
T Consensus 318 ~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 318 SKEAHALMDAIVEFIKSN 335 (336)
T ss_pred hhhHHHHHHHHHHHHhhc
Confidence 778889999999999864
No 2
>PRK10162 acetyl esterase; Provisional
Probab=100.00 E-value=8.1e-32 Score=208.46 Aligned_cols=192 Identities=27% Similarity=0.352 Sum_probs=150.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
.|+|||+|||||..++.+. +......++.+.|+.|+++|||++++..++..++|+.++++|+.+...+++
T Consensus 81 ~p~vv~~HGGg~~~g~~~~--~~~~~~~la~~~g~~Vv~vdYrlape~~~p~~~~D~~~a~~~l~~~~~~~~-------- 150 (318)
T PRK10162 81 QATLFYLHGGGFILGNLDT--HDRIMRLLASYSGCTVIGIDYTLSPEARFPQAIEEIVAVCCYFHQHAEDYG-------- 150 (318)
T ss_pred CCEEEEEeCCcccCCCchh--hhHHHHHHHHHcCCEEEEecCCCCCCCCCCCcHHHHHHHHHHHHHhHHHhC--------
Confidence 4899999999999988764 445566777778999999999999999999999999999999998766655
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHH------HHhhhc---cCCC---------------CC-----------------
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDE------MYAYMC---PTSA---------------GF----------------- 119 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~------~~~~~~---~~~~---------------~~----------------- 119 (208)
+++++|+|+|+|+||++|+.++.+... .....+ +... ..
T Consensus 151 ~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 230 (318)
T PRK10162 151 INMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDA 230 (318)
T ss_pred CChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCChhHHHhCCCccccCHHHHHHHHHHhCCCcc
Confidence 889999999999999999998875421 111111 0000 00
Q ss_pred -CCCCccCCCCCccc-ccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHH
Q 042897 120 -EEDPILNPALDPNL-KMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFL 197 (208)
Q Consensus 120 -~~~~~~~~~~~~~~-~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 197 (208)
..+++.+|. ...+ ..+| |++|++|+.|+++++++.+.++|++.|+ +++++.++|+.|+|..+....++.++.+
T Consensus 231 ~~~~p~~~p~-~~~l~~~lP--p~~i~~g~~D~L~de~~~~~~~L~~aGv--~v~~~~~~g~~H~f~~~~~~~~~a~~~~ 305 (318)
T PRK10162 231 DRESPYYCLF-NNDLTRDVP--PCFIAGAEFDPLLDDSRLLYQTLAAHQQ--PCEFKLYPGTLHAFLHYSRMMDTADDAL 305 (318)
T ss_pred ccCCcccCcc-hhhhhcCCC--CeEEEecCCCcCcChHHHHHHHHHHcCC--CEEEEEECCCceehhhccCchHHHHHHH
Confidence 011222221 1233 4556 9999999999999999999999999998 9999999999999988766667788999
Q ss_pred HHHHHHHHhc
Q 042897 198 QKLVNFIKST 207 (208)
Q Consensus 198 ~~i~~fl~~~ 207 (208)
+.+.+||+++
T Consensus 306 ~~~~~~l~~~ 315 (318)
T PRK10162 306 RDGAQFFTAQ 315 (318)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 3
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.97 E-value=5.5e-30 Score=198.25 Aligned_cols=189 Identities=30% Similarity=0.504 Sum_probs=152.6
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
.|+|||+|||||..++... +...+..++...|+.|+++|||+.|++.++..++|+.++++|+.++..+++
T Consensus 79 ~p~vly~HGGg~~~g~~~~--~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~~~~g-------- 148 (312)
T COG0657 79 APVVLYLHGGGWVLGSLRT--HDALVARLAAAAGAVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANAAELG-------- 148 (312)
T ss_pred CcEEEEEeCCeeeecChhh--hHHHHHHHHHHcCCEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhhHhhC--------
Confidence 4899999999999999875 357778999999999999999999999999999999999999999877666
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHH------------------------------------------HHhhhccCCCC
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDE------------------------------------------MYAYMCPTSAG 118 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~------------------------------------------~~~~~~~~~~~ 118 (208)
+|+++|+|+|+|+||++|+.++..... +...+......
T Consensus 149 ~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (312)
T COG0657 149 IDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGYGEADLLDAAAILAWFADLYLGAAPD 228 (312)
T ss_pred CCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchhhcCCccccCHHHHHHHHHHHhCcCccc
Confidence 999999999999999999998887621 01111110000
Q ss_pred CCCCCccCCCCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHH
Q 042897 119 FEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQ 198 (208)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 198 (208)
. .++..+|.....+..+| |+++++|+.|+++++++.+.+++++.|+ .+++..++++.|+|..... ++..+.+.
T Consensus 229 ~-~~p~~spl~~~~~~~lP--P~~i~~a~~D~l~~~~~~~a~~L~~agv--~~~~~~~~g~~H~f~~~~~--~~a~~~~~ 301 (312)
T COG0657 229 R-EDPEASPLASDDLSGLP--PTLIQTAEFDPLRDEGEAYAERLRAAGV--PVELRVYPGMIHGFDLLTG--PEARSALR 301 (312)
T ss_pred c-CCCccCccccccccCCC--CEEEEecCCCcchhHHHHHHHHHHHcCC--eEEEEEeCCcceeccccCc--HHHHHHHH
Confidence 1 22345554333355566 9999999999999999999999999998 9999999999999876554 55667788
Q ss_pred HHHHHHHh
Q 042897 199 KLVNFIKS 206 (208)
Q Consensus 199 ~i~~fl~~ 206 (208)
.+.+|+++
T Consensus 302 ~~~~~l~~ 309 (312)
T COG0657 302 QIAAFLRA 309 (312)
T ss_pred HHHHHHHH
Confidence 88888874
No 4
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.97 E-value=1.8e-30 Score=190.41 Aligned_cols=165 Identities=31% Similarity=0.500 Sum_probs=126.8
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCC
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADF 83 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~ 83 (208)
|||+|||||..++... ...+...++.+.|+.|+++|||++|+..++..++|+.++++|+.++..+++ +|+
T Consensus 1 v~~~HGGg~~~g~~~~--~~~~~~~la~~~g~~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~--------~d~ 70 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKES--HWPFAARLAAERGFVVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLG--------IDP 70 (211)
T ss_dssp EEEE--STTTSCGTTT--HHHHHHHHHHHHTSEEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHT--------EEE
T ss_pred CEEECCcccccCChHH--HHHHHHHHHhhccEEEEEeeccccccccccccccccccceeeecccccccc--------ccc
Confidence 7999999999998875 356677888778999999999999999999999999999999999865554 889
Q ss_pred CceEEeecChhHHHHHHHHHHHHHH---------------------------------------------HhhhccCCCC
Q 042897 84 GRVFLAGESAGANIAHYVAVQLDEM---------------------------------------------YAYMCPTSAG 118 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~~~~---------------------------------------------~~~~~~~~~~ 118 (208)
++|+|+|+|+||++|+.++.+.... +..+.+ ...
T Consensus 71 ~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 149 (211)
T PF07859_consen 71 ERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYLP-GSD 149 (211)
T ss_dssp EEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHHS-TGG
T ss_pred cceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhcccccccccccccccccccccccccccccccc-ccc
Confidence 9999999999999999999876111 000000 000
Q ss_pred CCCCCccCCCCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 119 FEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
. .++..+|......+.+| |+++++|+.|.++++++.+.++|++.|+ +++++.++++.|+|.
T Consensus 150 ~-~~~~~sp~~~~~~~~~P--p~~i~~g~~D~l~~~~~~~~~~L~~~gv--~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 150 R-DDPLASPLNASDLKGLP--PTLIIHGEDDVLVDDSLRFAEKLKKAGV--DVELHVYPGMPHGFF 210 (211)
T ss_dssp T-TSTTTSGGGSSCCTTCH--EEEEEEETTSTTHHHHHHHHHHHHHTT---EEEEEEETTEETTGG
T ss_pred c-cccccccccccccccCC--CeeeeccccccchHHHHHHHHHHHHCCC--CEEEEEECCCeEEee
Confidence 0 23444442222355566 9999999999999999999999999988 999999999999875
No 5
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.91 E-value=1.8e-23 Score=174.56 Aligned_cols=185 Identities=17% Similarity=0.167 Sum_probs=134.1
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCC-----------CCCCchhhHHHHHHHHHHhhcc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPE-----------HHLPIAHEDSWAGLEWVASHSY 69 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~-----------~~~~~~~~d~~~~~~~l~~~~~ 69 (208)
+|+||++|||....-.. . .....+.++.+||.|+.++||++.+ .......+|+.++++++.+.+.
T Consensus 394 yP~i~~~hGGP~~~~~~---~-~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~ 469 (620)
T COG1506 394 YPLIVYIHGGPSAQVGY---S-FNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPL 469 (620)
T ss_pred CCEEEEeCCCCcccccc---c-cchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCC
Confidence 49999999997443331 1 2333566677799999999998754 2344678999999998877754
Q ss_pred CCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCC-------------------CCC------c
Q 042897 70 GQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFE-------------------EDP------I 124 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~-------------------~~~------~ 124 (208)
+|++|++|+|+|+||++++.++.+.+.+..++.......+ ..+ +
T Consensus 470 -----------~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (620)
T COG1506 470 -----------VDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKY 538 (620)
T ss_pred -----------cChHHeEEeccChHHHHHHHHHhcCchhheEEeccCcchhhhhccccchhhcCCHHHhCCCcccChHHH
Confidence 8999999999999999999999988644333222110000 000 1
Q ss_pred cCCCCCcccccCCCCcEEEEeeCCCCCh--hhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHH
Q 042897 125 LNPALDPNLKMMRSDRVLVCVAEKDGLR--NRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVN 202 (208)
Q Consensus 125 ~~~~~~~~~~~~~~~p~li~~G~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~ 202 (208)
...+.......+.. |+|++||++|..+ +++..++++|+..|. +++++.||+.+|.+.. .+...+.++++.+
T Consensus 539 ~~~sp~~~~~~i~~-P~LliHG~~D~~v~~~q~~~~~~aL~~~g~--~~~~~~~p~e~H~~~~----~~~~~~~~~~~~~ 611 (620)
T COG1506 539 EDRSPIFYADNIKT-PLLLIHGEEDDRVPIEQAEQLVDALKRKGK--PVELVVFPDEGHGFSR----PENRVKVLKEILD 611 (620)
T ss_pred HhcChhhhhcccCC-CEEEEeecCCccCChHHHHHHHHHHHHcCc--eEEEEEeCCCCcCCCC----chhHHHHHHHHHH
Confidence 11112233344544 9999999999977 489999999999987 9999999999998765 2345678889999
Q ss_pred HHHhc
Q 042897 203 FIKST 207 (208)
Q Consensus 203 fl~~~ 207 (208)
|++++
T Consensus 612 ~~~~~ 616 (620)
T COG1506 612 WFKRH 616 (620)
T ss_pred HHHHH
Confidence 99876
No 6
>PRK10566 esterase; Provisional
Probab=99.87 E-value=2.9e-21 Score=144.99 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=117.1
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-------CC-------CchhhHHHHHHHHHHh
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-------HL-------PIAHEDSWAGLEWVAS 66 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-------~~-------~~~~~d~~~~~~~l~~ 66 (208)
.|+||++||++.. ... ...+...++++||.|+.+|||+.... .. ...++|+.++++++.+
T Consensus 27 ~p~vv~~HG~~~~---~~~---~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 100 (249)
T PRK10566 27 LPTVFFYHGFTSS---KLV---YSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIRE 100 (249)
T ss_pred CCEEEEeCCCCcc---cch---HHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999996532 221 23456666778999999999975321 11 1234566677777766
Q ss_pred hccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCC---------CCC----CC--------cc
Q 042897 67 HSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAG---------FEE----DP--------IL 125 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~---------~~~----~~--------~~ 125 (208)
.. .++.++|+|+|||+||.+++.++.+.+.......-...+ ... .+ ..
T Consensus 101 ~~-----------~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (249)
T PRK10566 101 EG-----------WLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFPPLIPETAAQQAEFNNIV 169 (249)
T ss_pred cC-----------CcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 43 267899999999999999999887653211110000000 000 00 00
Q ss_pred CC----CCCcccccC-CCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHH
Q 042897 126 NP----ALDPNLKMM-RSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQ 198 (208)
Q Consensus 126 ~~----~~~~~~~~~-~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 198 (208)
.+ .....+..+ +. |+|++||++|.+++ .++++.+.+++.|.+.+++++.+++.+|.+. .+.++
T Consensus 170 ~~~~~~~~~~~~~~i~~~-P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---------~~~~~ 239 (249)
T PRK10566 170 APLAEWEVTHQLEQLADR-PLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---------PEALD 239 (249)
T ss_pred HHHhhcChhhhhhhcCCC-CEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC---------HHHHH
Confidence 00 001123333 33 99999999999885 7888999998887523588999999999753 35689
Q ss_pred HHHHHHHhc
Q 042897 199 KLVNFIKST 207 (208)
Q Consensus 199 ~i~~fl~~~ 207 (208)
++++||+++
T Consensus 240 ~~~~fl~~~ 248 (249)
T PRK10566 240 AGVAFFRQH 248 (249)
T ss_pred HHHHHHHhh
Confidence 999999875
No 7
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.87 E-value=3.6e-21 Score=142.27 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=126.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC--------CCCchhhHHHHHHHHHHhhccCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH--------HLPIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~--------~~~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
-+|+++||.|..... .+ ...+..++..||.|+..||++.... ++...++|+...++.++...+
T Consensus 55 ~lv~~~HG~g~~~s~----~~-~~~a~~l~~~g~~v~a~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e---- 125 (313)
T KOG1455|consen 55 GLVFLCHGYGEHSSW----RY-QSTAKRLAKSGFAVYAIDYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREE---- 125 (313)
T ss_pred eEEEEEcCCcccchh----hH-HHHHHHHHhCCCeEEEeeccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccc----
Confidence 368999996643211 12 3345666777999999999976533 344567888888888776654
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhh-----------------------------ccCCCCCC----
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYM-----------------------------CPTSAGFE---- 120 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~-----------------------------~~~~~~~~---- 120 (208)
...-..+++||||||.+|+.++.+.+..|... +|......
T Consensus 126 -------~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~liP~wk~vp~~d~ 198 (313)
T KOG1455|consen 126 -------NKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLSKLIPTWKIVPTKDI 198 (313)
T ss_pred -------cCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHHHhCCceeecCCccc
Confidence 34468999999999999999999762222221 11110000
Q ss_pred -----CCC------ccCC--------------------CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCC
Q 042897 121 -----EDP------ILNP--------------------ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEW 167 (208)
Q Consensus 121 -----~~~------~~~~--------------------~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~ 167 (208)
.++ +.+| .....+..+.. |++|+||+.|.+++ .++++++...+.
T Consensus 199 ~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtv-PflilHG~dD~VTDp~~Sk~Lye~A~S~-- 275 (313)
T KOG1455|consen 199 IDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTV-PFLILHGTDDKVTDPKVSKELYEKASSS-- 275 (313)
T ss_pred cccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccc-cEEEEecCCCcccCcHHHHHHHHhccCC--
Confidence 010 0011 00123333444 99999999999985 679999988887
Q ss_pred CcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 168 HGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 168 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+.++..|||+-|+.... +..++.+.+..+|++||.++
T Consensus 276 --DKTlKlYpGm~H~Ll~g-E~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 276 --DKTLKLYPGMWHSLLSG-EPDENVEIVFGDIISWLDER 312 (313)
T ss_pred --CCceeccccHHHHhhcC-CCchhHHHHHHHHHHHHHhc
Confidence 78999999999986653 34577789999999999986
No 8
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.86 E-value=1.1e-21 Score=143.96 Aligned_cols=165 Identities=20% Similarity=0.268 Sum_probs=113.5
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCC-----------CCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecCh
Q 042897 25 FLTSLVVKANIVAITIDYRLAPEH-----------HLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESA 93 (208)
Q Consensus 25 ~~~~~~~~~g~~v~~~d~~~~~~~-----------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~ 93 (208)
...++++++||+|+.+|||++.+. .....++|+.++++++.+... +|++||+|+|+|+
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~-----------iD~~ri~i~G~S~ 73 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYY-----------IDPDRIGIMGHSY 73 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTS-----------EEEEEEEEEEETH
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhcccc-----------ccceeEEEEcccc
Confidence 446788899999999999987632 112457899999999988642 8999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCCC-------------------CCCccCC------CCCccccc--CCCCcEEEEee
Q 042897 94 GANIAHYVAVQLDEMYAYMCPTSAGFE-------------------EDPILNP------ALDPNLKM--MRSDRVLVCVA 146 (208)
Q Consensus 94 GG~~a~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~------~~~~~~~~--~~~~p~li~~G 146 (208)
||++++.++.+....+...+......+ ..+...+ ........ ... |+|++||
T Consensus 74 GG~~a~~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-P~li~hG 152 (213)
T PF00326_consen 74 GGYLALLAATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKP-PVLIIHG 152 (213)
T ss_dssp HHHHHHHHHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGS-EEEEEEE
T ss_pred cccccchhhcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCC-CEEEEcc
Confidence 999999999866332222211100000 0000000 01112222 333 9999999
Q ss_pred CCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 147 EKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 147 ~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
++|..++ ++.+++++|++.|. +++++++|+.+|++... +...+..+++.+|++++
T Consensus 153 ~~D~~Vp~~~s~~~~~~L~~~g~--~~~~~~~p~~gH~~~~~----~~~~~~~~~~~~f~~~~ 209 (213)
T PF00326_consen 153 ENDPRVPPSQSLRLYNALRKAGK--PVELLIFPGEGHGFGNP----ENRRDWYERILDFFDKY 209 (213)
T ss_dssp TTBSSSTTHHHHHHHHHHHHTTS--SEEEEEETT-SSSTTSH----HHHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHhcCC--CEEEEEcCcCCCCCCCc----hhHHHHHHHHHHHHHHH
Confidence 9999884 78999999999987 89999999999976542 22347888999999875
No 9
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.85 E-value=2.6e-20 Score=130.10 Aligned_cols=162 Identities=19% Similarity=0.269 Sum_probs=119.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-CCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-HLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
|++||+|||.|..|+... +-.....+.++||+|++++|.++++. ...+.+.++...++|+.+..+
T Consensus 68 klfIfIHGGYW~~g~rk~---clsiv~~a~~~gY~vasvgY~l~~q~htL~qt~~~~~~gv~filk~~~----------- 133 (270)
T KOG4627|consen 68 KLFIFIHGGYWQEGDRKM---CLSIVGPAVRRGYRVASVGYNLCPQVHTLEQTMTQFTHGVNFILKYTE----------- 133 (270)
T ss_pred cEEEEEecchhhcCchhc---ccchhhhhhhcCeEEEEeccCcCcccccHHHHHHHHHHHHHHHHHhcc-----------
Confidence 789999999999998865 33345666788999999999999876 778889999999999988753
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH--HHHHhhhcc-----------CCC----CCCC-CCccCCCCCcccccCCCCcEE
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL--DEMYAYMCP-----------TSA----GFEE-DPILNPALDPNLKMMRSDRVL 142 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~--~~~~~~~~~-----------~~~----~~~~-~~~~~~~~~~~~~~~~~~p~l 142 (208)
+..++.+.|||+|+++|+++.++. +..|..++. ... +... +.....+....++.+.. |++
T Consensus 134 -n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlgLt~~~ae~~Scdl~~~~~v~~-~il 211 (270)
T KOG4627|consen 134 -NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLGLTERNAESVSCDLWEYTDVTV-WIL 211 (270)
T ss_pred -cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccCcccchhhhcCccHHHhcCcee-eee
Confidence 346799999999999999988877 222222211 111 1111 11111223445566776 999
Q ss_pred EEeeCCCC--ChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccccc
Q 042897 143 VCVAEKDG--LRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMF 186 (208)
Q Consensus 143 i~~G~~D~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~ 186 (208)
++.|+.|. ++++.+.+.+.+++. ++..|++.+| |.+.
T Consensus 212 Vv~~~~espklieQnrdf~~q~~~a------~~~~f~n~~h-y~I~ 250 (270)
T KOG4627|consen 212 VVAAEHESPKLIEQNRDFADQLRKA------SFTLFKNYDH-YDII 250 (270)
T ss_pred EeeecccCcHHHHhhhhHHHHhhhc------ceeecCCcch-hhHH
Confidence 99999997 678999999988765 7889999999 4443
No 10
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.82 E-value=7.8e-20 Score=134.68 Aligned_cols=181 Identities=17% Similarity=0.109 Sum_probs=114.9
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCC-CCC-----------------CchhhHHHHHHH
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPE-HHL-----------------PIAHEDSWAGLE 62 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~-~~~-----------------~~~~~d~~~~~~ 62 (208)
.|+||++|+-.+.. .....+.+.+++.||.|++||+..... ... ....+|+.++++
T Consensus 14 ~~~Vvv~~d~~G~~------~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 87 (218)
T PF01738_consen 14 RPAVVVIHDIFGLN------PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVD 87 (218)
T ss_dssp EEEEEEE-BTTBS-------HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCc------hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 38999999943222 134445666778899999999765433 111 123457778899
Q ss_pred HHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEE
Q 042897 63 WVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVL 142 (208)
Q Consensus 63 ~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 142 (208)
+|++... ++..+|+++|+|+||.+|+.++.+. ..+...+..+... ...........+.. |++
T Consensus 88 ~l~~~~~-----------~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~-----~~~~~~~~~~~~~~-P~l 149 (218)
T PF01738_consen 88 YLRAQPE-----------VDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGS-----PPPPPLEDAPKIKA-PVL 149 (218)
T ss_dssp HHHCTTT-----------CEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SS-----SGGGHHHHGGG--S--EE
T ss_pred HHHhccc-----------cCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCC-----CCCcchhhhcccCC-CEe
Confidence 9988753 6679999999999999999888643 1122221111100 00001123445555 999
Q ss_pred EEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCC---CCchHHHHHHHHHHHHhc
Q 042897 143 VCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPK---SKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 143 i~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~---~~~~~~~~~~i~~fl~~~ 207 (208)
+++|++|+.++ ..+.+.+.+++.+. +++++.|||++|+|...... ....++.++++++||+++
T Consensus 150 ~~~g~~D~~~~~~~~~~~~~~l~~~~~--~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~ 217 (218)
T PF01738_consen 150 ILFGENDPFFPPEEVEALEEALKAAGV--DVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRH 217 (218)
T ss_dssp EEEETT-TTS-HHHHHHHHHHHHCTTT--TEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC-
T ss_pred ecCccCCCCCChHHHHHHHHHHHhcCC--cEEEEECCCCcccccCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 99999999875 35788889988876 99999999999999875432 235678999999999875
No 11
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.82 E-value=3.9e-19 Score=139.76 Aligned_cols=185 Identities=15% Similarity=0.158 Sum_probs=112.0
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC--------CCchhhHHHHHHHHHHhhccCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH--------LPIAHEDSWAGLEWVASHSYGQG 72 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~--------~~~~~~d~~~~~~~l~~~~~~~~ 72 (208)
.|+|||+||.+.... .+...+...+++.||.|+++|+|+.+... +...++|+.+.++.+.....
T Consensus 87 ~~~iv~lHG~~~~~~-----~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~--- 158 (349)
T PLN02385 87 KAAVCFCHGYGDTCT-----FFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPE--- 158 (349)
T ss_pred CeEEEEECCCCCccc-----hHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccc---
Confidence 378999999653221 12344455556679999999999765332 12234556666665543211
Q ss_pred CCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhc-----------------------------cCC-----CC
Q 042897 73 PEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMC-----------------------------PTS-----AG 118 (208)
Q Consensus 73 ~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~-----------------------------~~~-----~~ 118 (208)
.+..+++|+||||||.+++.++.+++..+...+ +.. ..
T Consensus 159 --------~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (349)
T PLN02385 159 --------FRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLANLLPKAKLVPQKD 230 (349)
T ss_pred --------cCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHHHCCCceecCCCc
Confidence 344689999999999999999887622111110 000 00
Q ss_pred C-C---CCC------------ccCC--------------CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcC
Q 042897 119 F-E---EDP------------ILNP--------------ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSE 166 (208)
Q Consensus 119 ~-~---~~~------------~~~~--------------~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g 166 (208)
. . .+. +..+ .....+..+.. |+++++|++|.+++ .++.+++.+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~-P~Lii~G~~D~vv~~~~~~~l~~~~~~~- 308 (349)
T PLN02385 231 LAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSL-PLLILHGEADKVTDPSVSKFLYEKASSS- 308 (349)
T ss_pred cccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCC-CEEEEEeCCCCccChHHHHHHHHHcCCC-
Confidence 0 0 000 0000 00012334555 99999999999885 456666666543
Q ss_pred CCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 167 WHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 167 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+++++.+|+++|......+ .+..+++.+.|.+||+++
T Consensus 309 ---~~~l~~i~~~gH~l~~e~p-~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 309 ---DKKLKLYEDAYHSILEGEP-DEMIFQVLDDIISWLDSH 345 (349)
T ss_pred ---CceEEEeCCCeeecccCCC-hhhHHHHHHHHHHHHHHh
Confidence 5689999999997544322 222455889999999976
No 12
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.81 E-value=2.5e-18 Score=134.25 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=114.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC--------CCchhhHHHHHHHHHHhhccCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH--------LPIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~--------~~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
|+|||+||.+... ... .......++++||.|+.+|+|+.+... +....+|+.++++++.....
T Consensus 60 ~~VvllHG~~~~~----~~~-~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~---- 130 (330)
T PLN02298 60 ALIFMVHGYGNDI----SWT-FQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREE---- 130 (330)
T ss_pred eEEEEEcCCCCCc----cee-hhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhccc----
Confidence 6799999965221 111 223344556779999999999765332 22346788888888876421
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHh-----------------------------hhccCCC---CCC-
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYA-----------------------------YMCPTSA---GFE- 120 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~-----------------------------~~~~~~~---~~~- 120 (208)
.+..+++|+||||||.+|+.++.+++..+. ...+... ...
T Consensus 131 -------~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (330)
T PLN02298 131 -------FQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPWPIPQILTFVARFLPTLAIVPTADL 203 (330)
T ss_pred -------CCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCchHHHHHHHHHHHHCCCCccccCCCc
Confidence 233579999999999999988876521111 0111000 000
Q ss_pred CCCc-----------cCCC--------------------CCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCC
Q 042897 121 EDPI-----------LNPA--------------------LDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEW 167 (208)
Q Consensus 121 ~~~~-----------~~~~--------------------~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~ 167 (208)
.... .++. ....+..+.. |+|+++|++|.+++ .++++++.+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-PvLii~G~~D~ivp~~~~~~l~~~i~~~-- 280 (330)
T PLN02298 204 LEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSI-PFIVLHGSADVVTDPDVSRALYEEAKSE-- 280 (330)
T ss_pred ccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCC-CEEEEecCCCCCCCHHHHHHHHHHhccC--
Confidence 0000 0010 0112344555 99999999999885 567777766544
Q ss_pred CcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 168 HGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 168 ~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+++++.+++++|......+ ....+++.+.+.+||.++
T Consensus 281 --~~~l~~~~~a~H~~~~e~p-d~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 281 --DKTIKIYDGMMHSLLFGEP-DENIEIVRRDILSWLNER 317 (330)
T ss_pred --CceEEEcCCcEeeeecCCC-HHHHHHHHHHHHHHHHHh
Confidence 5699999999997555333 223356888999999864
No 13
>PRK11460 putative hydrolase; Provisional
Probab=99.80 E-value=2.4e-18 Score=127.69 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=75.0
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYY 158 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~ 158 (208)
++.++|+|+|||+||.+++.++.+........+...... . . .+ ....... |++++||++|++++ .++++
T Consensus 100 ~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~-~--~-~~----~~~~~~~-pvli~hG~~D~vvp~~~~~~~ 170 (232)
T PRK11460 100 VGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRY-A--S-LP----ETAPTAT-TIHLIHGGEDPVIDVAHAVAA 170 (232)
T ss_pred CChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccc-c--c-cc----ccccCCC-cEEEEecCCCCccCHHHHHHH
Confidence 777899999999999999998876544333322211111 0 0 01 0111222 89999999999885 67889
Q ss_pred HHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 159 YETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
.+.+++.|. +++++.|++++|.+. .+.++.+.+||++
T Consensus 171 ~~~L~~~g~--~~~~~~~~~~gH~i~---------~~~~~~~~~~l~~ 207 (232)
T PRK11460 171 QEALISLGG--DVTLDIVEDLGHAID---------PRLMQFALDRLRY 207 (232)
T ss_pred HHHHHHCCC--CeEEEEECCCCCCCC---------HHHHHHHHHHHHH
Confidence 999999886 899999999999764 3556677777664
No 14
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.80 E-value=8.1e-18 Score=128.09 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=110.1
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC--CCCCC------------C-C------C-----chh
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR--LAPEH------------H-L------P-----IAH 54 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~--~~~~~------------~-~------~-----~~~ 54 (208)
+|+|+++||.+... ........+..++.+.|+.|+.||+. +.... . + + ...
T Consensus 42 ~P~vvllHG~~~~~---~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~ 118 (275)
T TIGR02821 42 VPVLWYLSGLTCTH---ENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMY 118 (275)
T ss_pred CCEEEEccCCCCCc---cHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHH
Confidence 48999999966332 21111223456777789999999973 21100 0 0 0 011
Q ss_pred hHHHHHH-HHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCC--------------
Q 042897 55 EDSWAGL-EWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGF-------------- 119 (208)
Q Consensus 55 ~d~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~-------------- 119 (208)
..+.+.+ ..+.+. + .++.++++|+||||||++|+.++.+++..+..........
T Consensus 119 ~~~~~~l~~~~~~~---~--------~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T TIGR02821 119 SYIVQELPALVAAQ---F--------PLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRCPWGQKAFSA 187 (275)
T ss_pred HHHHHHHHHHHHhh---C--------CCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccCcchHHHHHH
Confidence 1112222 222221 1 2677899999999999999999998744443222110000
Q ss_pred ----CCCC--ccCCCC-CcccccCCCCcEEEEeeCCCCChhh---HHHHHHHHHhcCCCcceEEEEeCCCCccccccCCC
Q 042897 120 ----EEDP--ILNPAL-DPNLKMMRSDRVLVCVAEKDGLRNR---GVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPK 189 (208)
Q Consensus 120 ----~~~~--~~~~~~-~~~~~~~~~~p~li~~G~~D~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~ 189 (208)
+... ..++.. .......+ |+++.+|++|++++. .+.+.+.+++.|. ++++..+||.+|+|..+
T Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~~~--plli~~G~~D~~v~~~~~~~~~~~~l~~~g~--~v~~~~~~g~~H~f~~~--- 260 (275)
T TIGR02821 188 YLGADEAAWRSYDASLLVADGGRHS--TILIDQGTADQFLDEQLRPDAFEQACRAAGQ--ALTLRRQAGYDHSYYFI--- 260 (275)
T ss_pred HhcccccchhhcchHHHHhhcccCC--CeeEeecCCCcccCccccHHHHHHHHHHcCC--CeEEEEeCCCCccchhH---
Confidence 0000 011100 01112223 899999999998764 5789999999987 99999999999998875
Q ss_pred CCchHHHHHHHHHHHHhc
Q 042897 190 SKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 190 ~~~~~~~~~~i~~fl~~~ 207 (208)
...+.+.++|..++
T Consensus 261 ----~~~~~~~~~~~~~~ 274 (275)
T TIGR02821 261 ----ASFIADHLRHHAER 274 (275)
T ss_pred ----HHhHHHHHHHHHhh
Confidence 35677777887664
No 15
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=99.80 E-value=1.6e-18 Score=137.46 Aligned_cols=93 Identities=34% Similarity=0.567 Sum_probs=84.9
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHAD 82 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (208)
+|+.+|||||...+..+ +..++++++.+.|+.++++||.+.|+++||..++++.-|+.|+..+...++ -.
T Consensus 398 li~HcHGGGfVAqsSkS--HE~YLr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~fAYcW~inn~allG--------~T 467 (880)
T KOG4388|consen 398 LIVHCHGGGFVAQSSKS--HEPYLRSWAQALGCPIISVDYSLAPEAPFPRALEEVFFAYCWAINNCALLG--------ST 467 (880)
T ss_pred EEEEecCCceeeecccc--ccHHHHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHHHHHHHHhcCHHHhC--------cc
Confidence 68999999999887764 578889999999999999999999999999999999999999999877666 66
Q ss_pred CCceEEeecChhHHHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+||++.|.|+||++++.++.+.
T Consensus 468 gEriv~aGDSAGgNL~~~VaLr~ 490 (880)
T KOG4388|consen 468 GERIVLAGDSAGGNLCFTVALRA 490 (880)
T ss_pred cceEEEeccCCCcceeehhHHHH
Confidence 79999999999999999888877
No 16
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.79 E-value=3.6e-19 Score=125.94 Aligned_cols=174 Identities=16% Similarity=0.220 Sum_probs=122.3
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-------CCCchhhHHHHHHHHHHhhccCCCCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-------HLPIAHEDSWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-------~~~~~~~d~~~~~~~l~~~~~~~~~~~ 75 (208)
.|+++|| ..|++.+ ..++.+.+.++||+|.+|.|++.... ......+|+.+++++|++..
T Consensus 17 AVLllHG---FTGt~~D---vr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~g------- 83 (243)
T COG1647 17 AVLLLHG---FTGTPRD---VRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAG------- 83 (243)
T ss_pred EEEEEec---cCCCcHH---HHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcC-------
Confidence 6899999 4565543 67789999999999999999976432 22345688999999999743
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHHHH---------------------HHh--hhccCCCCCCCCC-------cc
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQLDE---------------------MYA--YMCPTSAGFEEDP-------IL 125 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~---------------------~~~--~~~~~~~~~~~~~-------~~ 125 (208)
.+.|.++|.||||-+|+.+|.+.+. +.. .......+. ..+ ..
T Consensus 84 -------y~eI~v~GlSmGGv~alkla~~~p~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k-~~e~~~~e~~~~ 155 (243)
T COG1647 84 -------YDEIAVVGLSMGGVFALKLAYHYPPKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGK-DQEQIDKEMKSY 155 (243)
T ss_pred -------CCeEEEEeecchhHHHHHHHhhCCccceeeecCCcccccchhhhHHHHHHHHHhhhccCC-CHHHHHHHHHHh
Confidence 4789999999999999999998710 000 000000110 000 00
Q ss_pred C--C------------CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCC
Q 042897 126 N--P------------ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPK 189 (208)
Q Consensus 126 ~--~------------~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~ 189 (208)
. | .....+..+.. |++++.|.+|++++ .+..+++.+... +.++..|++.||..+.
T Consensus 156 ~~~~~~~~~~~~~~i~~~~~~~~~I~~-pt~vvq~~~D~mv~~~sA~~Iy~~v~s~----~KeL~~~e~SgHVIt~---- 226 (243)
T COG1647 156 KDTPMTTTAQLKKLIKDARRSLDKIYS-PTLVVQGRQDEMVPAESANFIYDHVESD----DKELKWLEGSGHVITL---- 226 (243)
T ss_pred hcchHHHHHHHHHHHHHHHhhhhhccc-chhheecccCCCCCHHHHHHHHHhccCC----cceeEEEccCCceeec----
Confidence 0 0 11223444444 99999999999986 456677777766 7899999999998766
Q ss_pred CCchHHHHHHHHHHHHh
Q 042897 190 SKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 190 ~~~~~~~~~~i~~fl~~ 206 (208)
..+.+++.+.++.||+.
T Consensus 227 D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 227 DKERDQVEEDVITFLEK 243 (243)
T ss_pred chhHHHHHHHHHHHhhC
Confidence 34568899999999973
No 17
>PRK13604 luxD acyl transferase; Provisional
Probab=99.78 E-value=7.6e-18 Score=127.54 Aligned_cols=159 Identities=12% Similarity=0.118 Sum_probs=103.2
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCC-CC--CC-----CCchhhHHHHHHHHHHhhccCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLA-PE--HH-----LPIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-~~--~~-----~~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
|+||+.||-+. ... +...+++.++++||.|+.+|+|.+ .+ .. ......|+.++++|+++.
T Consensus 38 ~~vIi~HGf~~---~~~---~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~------ 105 (307)
T PRK13604 38 NTILIASGFAR---RMD---HFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTR------ 105 (307)
T ss_pred CEEEEeCCCCC---ChH---HHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhc------
Confidence 68999999443 221 245567777888999999998754 22 22 345678999999999874
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHH--------------HHHHhhhc-------cCCCC--------CCC--C
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQL--------------DEMYAYMC-------PTSAG--------FEE--D 122 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~--------------~~~~~~~~-------~~~~~--------~~~--~ 122 (208)
+.++|+|+||||||.+|+.+|... +....... +.... ... .
T Consensus 106 --------~~~~I~LiG~SmGgava~~~A~~~~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~lp~~~d~~g~~l~~~ 177 (307)
T PRK13604 106 --------GINNLGLIAASLSARIAYEVINEIDLSFLITAVGVVNLRDTLERALGYDYLSLPIDELPEDLDFEGHNLGSE 177 (307)
T ss_pred --------CCCceEEEEECHHHHHHHHHhcCCCCCEEEEcCCcccHHHHHHHhhhcccccCcccccccccccccccccHH
Confidence 236899999999999997766543 11111000 00000 000 0
Q ss_pred Cc------cCC----CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccc
Q 042897 123 PI------LNP----ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHM 185 (208)
Q Consensus 123 ~~------~~~----~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~ 185 (208)
.. ..+ ......+.+.. |+|++||++|.+++ .++++++.++.. +++++.+||+.|.+.-
T Consensus 178 ~f~~~~~~~~~~~~~s~i~~~~~l~~-PvLiIHG~~D~lVp~~~s~~l~e~~~s~----~kkl~~i~Ga~H~l~~ 247 (307)
T PRK13604 178 VFVTDCFKHGWDTLDSTINKMKGLDI-PFIAFTANNDSWVKQSEVIDLLDSIRSE----QCKLYSLIGSSHDLGE 247 (307)
T ss_pred HHHHHHHhcCccccccHHHHHhhcCC-CEEEEEcCCCCccCHHHHHHHHHHhccC----CcEEEEeCCCccccCc
Confidence 00 000 00123445554 99999999999885 567888877654 7899999999997653
No 18
>PLN02442 S-formylglutathione hydrolase
Probab=99.77 E-value=2.2e-17 Score=126.05 Aligned_cols=168 Identities=14% Similarity=0.084 Sum_probs=100.3
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC-----C---------CC-C-----C-----chhh
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP-----E---------HH-L-----P-----IAHE 55 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-----~---------~~-~-----~-----~~~~ 55 (208)
+|+|+|+||++... ........+..++...|+.|+.||..... . .. + + ....
T Consensus 47 ~Pvv~~lHG~~~~~---~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (283)
T PLN02442 47 VPVLYWLSGLTCTD---ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYD 123 (283)
T ss_pred CCEEEEecCCCcCh---HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCCcceeeccccCCCcccchhh
Confidence 59999999955332 21111222456777889999999964321 0 00 0 0 0011
Q ss_pred H-HHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCC-C-CC---------
Q 042897 56 D-SWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFE-E-DP--------- 123 (208)
Q Consensus 56 d-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~-~-~~--------- 123 (208)
. ..+..+++.+... .++.++++|+|+||||++|+.++.++...+........... . .+
T Consensus 124 ~~~~~l~~~i~~~~~----------~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (283)
T PLN02442 124 YVVKELPKLLSDNFD----------QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPINCPWGQKAFTNY 193 (283)
T ss_pred hHHHHHHHHHHHHHH----------hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCcccCchhhHHHHHH
Confidence 1 1222333333211 15778999999999999999999987555442222110000 0 00
Q ss_pred ---------ccCC-CCCcccccCCCCcEEEEeeCCCCChhh---HHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 124 ---------ILNP-ALDPNLKMMRSDRVLVCVAEKDGLRNR---GVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 124 ---------~~~~-~~~~~~~~~~~~p~li~~G~~D~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
...+ ........... |+++++|++|.+++. ++.+++.+++.|. +++++++|+.+|.+.
T Consensus 194 ~g~~~~~~~~~d~~~~~~~~~~~~~-pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~--~~~~~~~pg~~H~~~ 264 (283)
T PLN02442 194 LGSDKADWEEYDATELVSKFNDVSA-TILIDQGEADKFLKEQLLPENFEEACKEAGA--PVTLRLQPGYDHSYF 264 (283)
T ss_pred cCCChhhHHHcChhhhhhhccccCC-CEEEEECCCCccccccccHHHHHHHHHHcCC--CeEEEEeCCCCccHH
Confidence 0011 00111222333 999999999998763 6889999999987 899999999999755
No 19
>PHA02857 monoglyceride lipase; Provisional
Probab=99.77 E-value=1.5e-17 Score=126.68 Aligned_cols=179 Identities=17% Similarity=0.213 Sum_probs=109.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC-----C---chhhHHHHHHHHHHhhccCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL-----P---IAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~-----~---~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
|+|+++||.+... . .| ..+...+.+.||.|+++|+|+...... . ..++|+.+.+++++..
T Consensus 26 ~~v~llHG~~~~~---~--~~-~~~~~~l~~~g~~via~D~~G~G~S~~~~~~~~~~~~~~~d~~~~l~~~~~~------ 93 (276)
T PHA02857 26 ALVFISHGAGEHS---G--RY-EELAENISSLGILVFSHDHIGHGRSNGEKMMIDDFGVYVRDVVQHVVTIKST------ 93 (276)
T ss_pred EEEEEeCCCcccc---c--hH-HHHHHHHHhCCCEEEEccCCCCCCCCCccCCcCCHHHHHHHHHHHHHHHHhh------
Confidence 6788889955322 1 23 445666677799999999997653321 1 2245555666555442
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhh--------------------------ccCCC--CCC-----
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYM--------------------------CPTSA--GFE----- 120 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~--------------------------~~~~~--~~~----- 120 (208)
....+++|+|||+||.+|+.++.+.+..+... .+... ...
T Consensus 94 -------~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (276)
T PHA02857 94 -------YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYPNKIVGKLCPESVS 166 (276)
T ss_pred -------CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCCCCccCCCCHhhcc
Confidence 23468999999999999999887662111110 00000 000
Q ss_pred ----------CCCccC--C--------------CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceE
Q 042897 121 ----------EDPILN--P--------------ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAE 172 (208)
Q Consensus 121 ----------~~~~~~--~--------------~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~ 172 (208)
.++... . .....+..+.. |+++++|++|.+++ ..+.+.+.+.. +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-Pvliv~G~~D~i~~~~~~~~l~~~~~~-----~~~ 240 (276)
T PHA02857 167 RDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKT-PILILQGTNNEISDVSGAYYFMQHANC-----NRE 240 (276)
T ss_pred CCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCC-CEEEEecCCCCcCChHHHHHHHHHccC-----Cce
Confidence 000000 0 00122345555 99999999999885 44555554422 469
Q ss_pred EEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 173 FYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 173 ~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+..+++++|..... ..+..+++++++.+||+++
T Consensus 241 ~~~~~~~gH~~~~e--~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 241 IKIYEGAKHHLHKE--TDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred EEEeCCCcccccCC--chhHHHHHHHHHHHHHHHh
Confidence 99999999976542 2244678999999999875
No 20
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.77 E-value=8.6e-18 Score=115.78 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=96.9
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHAD 82 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (208)
+||++||++.. . ..+. .+.+.+++.||.|+.+||+..... ....++.++++++.... .+
T Consensus 1 ~vv~~HG~~~~---~--~~~~-~~~~~l~~~G~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------------~~ 59 (145)
T PF12695_consen 1 VVVLLHGWGGS---R--RDYQ-PLAEALAEQGYAVVAFDYPGHGDS---DGADAVERVLADIRAGY------------PD 59 (145)
T ss_dssp EEEEECTTTTT---T--HHHH-HHHHHHHHTTEEEEEESCTTSTTS---HHSHHHHHHHHHHHHHH------------CT
T ss_pred CEEEECCCCCC---H--HHHH-HHHHHHHHCCCEEEEEecCCCCcc---chhHHHHHHHHHHHhhc------------CC
Confidence 68999997653 2 1233 445566777999999999876544 44456667777664321 46
Q ss_pred CCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYE 160 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~ 160 (208)
.++|+++|||+||.+++.++.+. ..+...+.. .++ + ....+..... |+++++|++|++++ ..+++++
T Consensus 60 ~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~------~~~--~-~~~~~~~~~~-pv~~i~g~~D~~~~~~~~~~~~~ 128 (145)
T PF12695_consen 60 PDRIILIGHSMGGAIAANLAARN-PRVKAVVLL------SPY--P-DSEDLAKIRI-PVLFIHGENDPLVPPEQVRRLYE 128 (145)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHS-TTESEEEEE------SES--S-GCHHHTTTTS-EEEEEEETT-SSSHHHHHHHHHH
T ss_pred CCcEEEEEEccCcHHHHHHhhhc-cceeEEEEe------cCc--c-chhhhhccCC-cEEEEEECCCCcCCHHHHHHHHH
Confidence 78999999999999999998754 222222221 111 2 1344555555 99999999999874 5666777
Q ss_pred HHHhcCCCcceEEEEeCCCCcc
Q 042897 161 TLKKSEWHGKAEFYQTLGEDHC 182 (208)
Q Consensus 161 ~l~~~g~~~~~~~~~~~~~~H~ 182 (208)
.++ . +.+++.+++++|+
T Consensus 129 ~~~-~----~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 129 ALP-G----PKELYIIPGAGHF 145 (145)
T ss_dssp HHC-S----SEEEEEETTS-TT
T ss_pred HcC-C----CcEEEEeCCCcCc
Confidence 676 2 7899999999994
No 21
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.77 E-value=7e-18 Score=124.08 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=75.8
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYY 158 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~ 158 (208)
++++||+|+|+|+||.+|+.++.+....+...+...... ... .. ........+.+|++++||++|++++ .+++.
T Consensus 102 i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~-~~~--~~-~~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~ 177 (216)
T PF02230_consen 102 IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYL-PPE--SE-LEDRPEALAKTPILIIHGDEDPVVPFEWAEKT 177 (216)
T ss_dssp --GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES----TTG--CC-CHCCHCCCCTS-EEEEEETT-SSSTHHHHHHH
T ss_pred CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeeccc-ccc--cc-ccccccccCCCcEEEEecCCCCcccHHHHHHH
Confidence 889999999999999999999987755554444432222 110 00 0111122222389999999999886 67889
Q ss_pred HHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 159 YETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 159 ~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+.|++.+. +++++.|++++|... .+.++++.+||+++
T Consensus 178 ~~~L~~~~~--~v~~~~~~g~gH~i~---------~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 178 AEFLKAAGA--NVEFHEYPGGGHEIS---------PEELRDLREFLEKH 215 (216)
T ss_dssp HHHHHCTT---GEEEEEETT-SSS-----------HHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CEEEEEcCCCCCCCC---------HHHHHHHHHHHhhh
Confidence 999999986 999999999999643 47789999999875
No 22
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=5.1e-17 Score=120.42 Aligned_cols=179 Identities=17% Similarity=0.090 Sum_probs=125.9
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCC--CCC-----------------CCCchhhHHHHHHH
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLA--PEH-----------------HLPIAHEDSWAGLE 62 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~-----------------~~~~~~~d~~~~~~ 62 (208)
|+||++|+-.+... +...+.+.++..||.|++||.-.. ... .......|+.++++
T Consensus 28 P~VIv~hei~Gl~~------~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~ 101 (236)
T COG0412 28 PGVIVLHEIFGLNP------HIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALD 101 (236)
T ss_pred CEEEEEecccCCch------HHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHH
Confidence 89999999443322 345566777888999999996431 110 11245678999999
Q ss_pred HHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEE
Q 042897 63 WVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVL 142 (208)
Q Consensus 63 ~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l 142 (208)
||..+.. ++..+|+++|+|+||.+++.++.+.. .+......+... ..........++. |++
T Consensus 102 ~L~~~~~-----------~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~------~~~~~~~~~~~~~-pvl 162 (236)
T COG0412 102 YLARQPQ-----------VDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGL------IADDTADAPKIKV-PVL 162 (236)
T ss_pred HHHhCCC-----------CCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCC------CCCcccccccccC-cEE
Confidence 9988753 67899999999999999999997643 122222211111 0001112345555 999
Q ss_pred EEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccC------CCCCchHHHHHHHHHHHHhc
Q 042897 143 VCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFN------PKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 143 i~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~------~~~~~~~~~~~~i~~fl~~~ 207 (208)
+.+|+.|..++ .-..+.+.+.+.+. ++++++|+++.|+|.... ......++.|+++.+|++++
T Consensus 163 ~~~~~~D~~~p~~~~~~~~~~~~~~~~--~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~ 233 (236)
T COG0412 163 LHLAGEDPYIPAADVDALAAALEDAGV--KVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRL 233 (236)
T ss_pred EEecccCCCCChhHHHHHHHHHHhcCC--CeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHh
Confidence 99999999775 45778888998876 899999999999998642 23345688999999999875
No 23
>PRK10749 lysophospholipase L2; Provisional
Probab=99.76 E-value=2.1e-17 Score=128.96 Aligned_cols=72 Identities=13% Similarity=0.095 Sum_probs=52.3
Q ss_pred ccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCC-cceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhcC
Q 042897 134 KMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWH-GKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKSTK 208 (208)
Q Consensus 134 ~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~-~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~~ 208 (208)
..+.. |+|+++|++|.+++ .++.+++.+++.+.+ .+++++.+|+++|..... . ....++++++|.+||+++.
T Consensus 256 ~~i~~-P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E-~-~~~r~~v~~~i~~fl~~~~ 330 (330)
T PRK10749 256 GDITT-PLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFE-K-DAMRSVALNAIVDFFNRHN 330 (330)
T ss_pred cCCCC-CEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhC-C-cHHHHHHHHHHHHHHhhcC
Confidence 44555 99999999999875 567777877665321 256899999999965442 1 1234778999999999863
No 24
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.74 E-value=2e-16 Score=125.63 Aligned_cols=178 Identities=16% Similarity=0.177 Sum_probs=111.4
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC--------CchhhHHHHHHHHHHhhccCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL--------PIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~--------~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
|+|||+||.+.... .| ..+...+.+.||.|+.+|+++...... ....+|+.++++++...
T Consensus 137 ~~Vl~lHG~~~~~~-----~~-~~~a~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~------ 204 (395)
T PLN02652 137 GILIIIHGLNEHSG-----RY-LHFAKQLTSCGFGVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSE------ 204 (395)
T ss_pred eEEEEECCchHHHH-----HH-HHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHh------
Confidence 68999999553211 13 344555677799999999997653321 23356788888888754
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHHH---------------------H-------HHhhhccCC---CC----
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQLD---------------------E-------MYAYMCPTS---AG---- 118 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~---------------------~-------~~~~~~~~~---~~---- 118 (208)
.+..+++|+||||||.+++.++.+.+ . ......+.. ..
T Consensus 205 -------~~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~ 277 (395)
T PLN02652 205 -------NPGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSLVAPRFQFKGANKRG 277 (395)
T ss_pred -------CCCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECcccccccchHHHHHHHHHHHHhCCCCcccCccccc
Confidence 22357999999999999987764310 0 000000100 00
Q ss_pred --CCCC------CccCCC--------------------CCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCC
Q 042897 119 --FEED------PILNPA--------------------LDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWH 168 (208)
Q Consensus 119 --~~~~------~~~~~~--------------------~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~ 168 (208)
...+ .+..|. ....+..+.. |+|++||++|.+++ .++++++.+...
T Consensus 278 ~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~v-PvLIi~G~~D~vvp~~~a~~l~~~~~~~--- 353 (395)
T PLN02652 278 IPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTV-PFMVLHGTADRVTDPLASQDLYNEAASR--- 353 (395)
T ss_pred CCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCC-CEEEEEeCCCCCCCHHHHHHHHHhcCCC---
Confidence 0000 000110 0122344555 99999999999885 566676666544
Q ss_pred cceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 169 GKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 169 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+++++.+|+++|.... + +..+++++.+.+||+++
T Consensus 354 -~k~l~~~~ga~H~l~~-e---~~~e~v~~~I~~FL~~~ 387 (395)
T PLN02652 354 -HKDIKLYDGFLHDLLF-E---PEREEVGRDIIDWMEKR 387 (395)
T ss_pred -CceEEEECCCeEEecc-C---CCHHHHHHHHHHHHHHH
Confidence 5688899999996444 2 34588999999999864
No 25
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.74 E-value=9e-18 Score=118.53 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=126.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC---CCCc-hhhHHHHHHHHHHhhccCCCCCCc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH---HLPI-AHEDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~---~~~~-~~~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
.|+++++|+.+++.|.+ ...+.-+....+++|+.++||+.... +.+. ..-|.+++++||...+.
T Consensus 78 ~pTlLyfh~NAGNmGhr-----~~i~~~fy~~l~mnv~ivsYRGYG~S~GspsE~GL~lDs~avldyl~t~~~------- 145 (300)
T KOG4391|consen 78 RPTLLYFHANAGNMGHR-----LPIARVFYVNLKMNVLIVSYRGYGKSEGSPSEEGLKLDSEAVLDYLMTRPD------- 145 (300)
T ss_pred CceEEEEccCCCcccch-----hhHHHHHHHHcCceEEEEEeeccccCCCCccccceeccHHHHHHHHhcCcc-------
Confidence 59999999988777764 34456667788999999999986533 2223 34699999999988754
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCC----CCccCC---------------CCCcccccCC
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEE----DPILNP---------------ALDPNLKMMR 137 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------~~~~~~~~~~ 137 (208)
.|..+++|.|.|.||.+|+.+|.++.....+..-...-... -+...| ........-.
T Consensus 146 ----~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~~~k~i~~lc~kn~~~S~~ki~~~~ 221 (300)
T KOG4391|consen 146 ----LDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPFPMKYIPLLCYKNKWLSYRKIGQCR 221 (300)
T ss_pred ----CCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccchhhHHHHHHHHhhhcchhhhcccc
Confidence 88899999999999999999999874333222211000000 011111 0011112112
Q ss_pred CCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 138 SDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 138 ~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.|.|++.|..|.++| ..+++++...+. ..++.+||++.|.-++.- +-+++.|.+||.+.
T Consensus 222 -~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~----~Krl~eFP~gtHNDT~i~------dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 222 -MPFLFISGLKDELVPPVMMRQLYELCPSR----TKRLAEFPDGTHNDTWIC------DGYFQAIEDFLAEV 282 (300)
T ss_pred -CceEEeecCccccCCcHHHHHHHHhCchh----hhhheeCCCCccCceEEe------ccHHHHHHHHHHHh
Confidence 389999999999996 678888888877 779999999999644422 56789999998864
No 26
>COG0400 Predicted esterase [General function prediction only]
Probab=99.73 E-value=2e-16 Score=113.97 Aligned_cols=172 Identities=22% Similarity=0.191 Sum_probs=109.8
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCC-----------CCCCCC--chhhHHHHHHHHHHhhc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLA-----------PEHHLP--IAHEDSWAGLEWVASHS 68 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-----------~~~~~~--~~~~d~~~~~~~l~~~~ 68 (208)
|+||++||-| ++.. ++.+.....+. ...++.+.-+.. ....+. ....+.....+++....
T Consensus 19 ~~iilLHG~G---gde~--~~~~~~~~~~P--~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~ 91 (207)
T COG0400 19 PLLILLHGLG---GDEL--DLVPLPELILP--NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELA 91 (207)
T ss_pred cEEEEEecCC---CChh--hhhhhhhhcCC--CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHH
Confidence 7899999965 3332 12332222222 366666643321 111222 12233444455555555
Q ss_pred cCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCC
Q 042897 69 YGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEK 148 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~ 148 (208)
...+ ++.++++++|+|+|+++++.++.+....+...+... +...+. ......+..+|++++||++
T Consensus 92 ~~~g--------i~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~------g~~~~~-~~~~~~~~~~pill~hG~~ 156 (207)
T COG0400 92 EEYG--------IDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFS------GMLPLE-PELLPDLAGTPILLSHGTE 156 (207)
T ss_pred HHhC--------CChhheEEEecChHHHHHHHHHHhCchhhccchhcC------CcCCCC-CccccccCCCeEEEeccCc
Confidence 4444 889999999999999999999988765555444421 111111 1111223233899999999
Q ss_pred CCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 149 DGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 149 D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
|++++ .+.++.+.+++.|. +|++..++ +||... .+.++.+.+|+.+.
T Consensus 157 Dpvvp~~~~~~l~~~l~~~g~--~v~~~~~~-~GH~i~---------~e~~~~~~~wl~~~ 205 (207)
T COG0400 157 DPVVPLALAEALAEYLTASGA--DVEVRWHE-GGHEIP---------PEELEAARSWLANT 205 (207)
T ss_pred CCccCHHHHHHHHHHHHHcCC--CEEEEEec-CCCcCC---------HHHHHHHHHHHHhc
Confidence 99885 77889999999987 99999999 799643 46788888898764
No 27
>PRK10115 protease 2; Provisional
Probab=99.73 E-value=2e-16 Score=133.45 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=113.6
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-----------CCchhhHHHHHHHHHHhhcc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-----------LPIAHEDSWAGLEWVASHSY 69 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-----------~~~~~~d~~~~~~~l~~~~~ 69 (208)
.|+||++|||........ |..... .+.++|+.|+.+++|++.+.. -....+|+.+++++|.+..-
T Consensus 445 ~P~ll~~hGg~~~~~~p~---f~~~~~-~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~ 520 (686)
T PRK10115 445 NPLLVYGYGSYGASIDAD---FSFSRL-SLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGY 520 (686)
T ss_pred CCEEEEEECCCCCCCCCC---ccHHHH-HHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Confidence 399999999765543332 333333 456679999999999875321 22567899999999988643
Q ss_pred CCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCC-----------------C------CCCCCC---
Q 042897 70 GQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTS-----------------A------GFEEDP--- 123 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~-----------------~------~~~~~~--- 123 (208)
++++|++++|.|+||.++..++.+.+..+++.+... . +...++
T Consensus 521 -----------~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~ 589 (686)
T PRK10115 521 -----------GSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYY 589 (686)
T ss_pred -----------CChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHH
Confidence 889999999999999999998887644433332210 0 100111
Q ss_pred ----ccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEe---CCCCcc
Q 042897 124 ----ILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQT---LGEDHC 182 (208)
Q Consensus 124 ----~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~---~~~~H~ 182 (208)
..+| ...++.+..|++|+++|.+|..++ ++.++.++|++.+. +++.+.+ ++.||+
T Consensus 590 ~~l~~~SP--~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~--~~~~vl~~~~~~~GHg 653 (686)
T PRK10115 590 EYMKSYSP--YDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKT--DDHLLLLCTDMDSGHG 653 (686)
T ss_pred HHHHHcCc--hhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCC--CCceEEEEecCCCCCC
Confidence 0122 334444444247888999999775 78999999999986 7788888 999997
No 28
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=99.72 E-value=3.9e-16 Score=120.58 Aligned_cols=167 Identities=21% Similarity=0.297 Sum_probs=112.3
Q ss_pred CEEEEEcCCccccCCCCCchh-HHHHHHHHHhCCcEEEEecCCCCC----CCCCCchhhHHHHHHHHHHhhccCCCCCCc
Q 042897 2 PLLIHYHGGGFCLGSALDMPF-KRFLTSLVVKANIVAITIDYRLAP----EHHLPIAHEDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~-~~~~~~~~~~~g~~v~~~d~~~~~----~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
|+|||+||||+..+....... ...+..++. ...++++||.+.+ +..+|.++.++.+.+++|.+.
T Consensus 123 pVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~Lv~~--------- 191 (374)
T PF10340_consen 123 PVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDYLVES--------- 191 (374)
T ss_pred cEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCCCcCchHHHHHHHHHHHHHhc---------
Confidence 899999999999887643211 111223333 4689999999987 789999999999999999954
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHHHH----------------------------------------------HHh
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQLDE----------------------------------------------MYA 110 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~----------------------------------------------~~~ 110 (208)
....+|.|+|.|+||++++.++..... +..
T Consensus 192 ----~G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~~~D~l~~~~~~~~~~ 267 (374)
T PF10340_consen 192 ----EGNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNEKRDMLSYKGLSMFGD 267 (374)
T ss_pred ----cCCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccccccccchhhHHHHHH
Confidence 335799999999999999998876611 011
Q ss_pred hhccCCCC---CCCCCccCCCC---CcccccC-CCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCc----ceEEEEeCCC
Q 042897 111 YMCPTSAG---FEEDPILNPAL---DPNLKMM-RSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHG----KAEFYQTLGE 179 (208)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~---~~~~~~~-~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~----~~~~~~~~~~ 179 (208)
.+.+.... ....+..++.. .+.++++ +...++|+.|+++.++++..++.+.+.+.+- . ..++...+++
T Consensus 268 ~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~EvfrddI~~~~~~~~~~~~-~~~~~~~nv~~~~~G 346 (374)
T PF10340_consen 268 AYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVFRDDILEWAKKLNDVKP-NKFSNSNNVYIDEGG 346 (374)
T ss_pred hhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCccccHHHHHHHHHHHhhcCc-cccCCcceEEEecCC
Confidence 11111000 00111111111 1233332 2227999999999999999999999986641 1 4588888899
Q ss_pred Ccccc
Q 042897 180 DHCFH 184 (208)
Q Consensus 180 ~H~~~ 184 (208)
.|.-+
T Consensus 347 ~Hi~P 351 (374)
T PF10340_consen 347 IHIGP 351 (374)
T ss_pred ccccc
Confidence 99644
No 29
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.71 E-value=1.3e-16 Score=116.98 Aligned_cols=150 Identities=13% Similarity=0.066 Sum_probs=94.9
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-------------CCCchhhHHHHHHHHHHhh
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-------------HLPIAHEDSWAGLEWVASH 67 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-------------~~~~~~~d~~~~~~~l~~~ 67 (208)
+|+||++||+++....... ...+..++.+.|+.|+.||++..... .......|+...++++.+.
T Consensus 13 ~P~vv~lHG~~~~~~~~~~---~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 89 (212)
T TIGR01840 13 RALVLALHGCGQTASAYVI---DWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKAN 89 (212)
T ss_pred CCEEEEeCCCCCCHHHHhh---hcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHh
Confidence 5999999998755332110 01145667778999999999864311 1123456777888888764
Q ss_pred ccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCC--C------CccC-CCC---------
Q 042897 68 SYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEE--D------PILN-PAL--------- 129 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~-~~~--------- 129 (208)
. .+++++|+|+|||+||.+++.++.++...+............ + .... +..
T Consensus 90 ~-----------~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (212)
T TIGR01840 90 Y-----------SIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQMCTAATAASVCRLVR 158 (212)
T ss_pred c-----------CcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhcCCCCCHHHHHHHHh
Confidence 2 278899999999999999999999886655554432211100 0 0000 000
Q ss_pred --CcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhc
Q 042897 130 --DPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKS 165 (208)
Q Consensus 130 --~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~ 165 (208)
.... ..+.+|++++||++|.+++ .++++.+++++.
T Consensus 159 ~~~~~~-~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 159 GMQSEY-NGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred ccCCcc-cCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 0011 1122368899999999874 677888888776
No 30
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.70 E-value=1.4e-15 Score=113.97 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=101.0
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC----chhhHH-HHHHHHHHhhccCCCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP----IAHEDS-WAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~----~~~~d~-~~~~~~l~~~~~~~~~~~ 75 (208)
.|+||++||.+... . .|... ...+.+ +|.|+.+|+++......+ ...+|. ....+++..
T Consensus 13 ~~~iv~lhG~~~~~---~--~~~~~-~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~--------- 76 (257)
T TIGR03611 13 APVVVLSSGLGGSG---S--YWAPQ-LDVLTQ-RFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDA--------- 76 (257)
T ss_pred CCEEEEEcCCCcch---h--HHHHH-HHHHHh-ccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHH---------
Confidence 37899999965322 1 23333 344444 899999999976543221 122332 333333332
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCC----------------------------------CC-
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAG----------------------------------FE- 120 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~----------------------------------~~- 120 (208)
.+..+++|+|||+||.+|+.++.+.+..+...+..... ..
T Consensus 77 -----~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (257)
T TIGR03611 77 -----LNIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPA 151 (257)
T ss_pred -----hCCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccc
Confidence 34578999999999999999987663222221110000 00
Q ss_pred --C-C--C--------ccC---C--------------CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCC
Q 042897 121 --E-D--P--------ILN---P--------------ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWH 168 (208)
Q Consensus 121 --~-~--~--------~~~---~--------------~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~ 168 (208)
. . . ... . .....+..+.. |+++++|++|.+++ ..+++.+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-P~l~i~g~~D~~~~~~~~~~~~~~~~----- 225 (257)
T TIGR03611 152 DWISENAARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQH-PVLLIANRDDMLVPYTQSLRLAAALP----- 225 (257)
T ss_pred cHhhccchhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCc-cEEEEecCcCcccCHHHHHHHHHhcC-----
Confidence 0 0 0 000 0 01122344554 99999999999875 3344443322
Q ss_pred cceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 169 GKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 169 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
+++++.++++||.+.. +..+++.+.|.+||++
T Consensus 226 -~~~~~~~~~~gH~~~~-----~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 226 -NAQLKLLPYGGHASNV-----TDPETFNRALLDFLKT 257 (257)
T ss_pred -CceEEEECCCCCCccc-----cCHHHHHHHHHHHhcC
Confidence 5588889999996544 3457889999999863
No 31
>PRK10985 putative hydrolase; Provisional
Probab=99.70 E-value=1.3e-15 Score=118.59 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=63.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC-------CchhhHHHHHHHHHHhhccCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL-------PIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~-------~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
.|+||++||.+.. ..+ .+...+...+.++||.|+++|||+..+.+. ....+|+..+++++++.
T Consensus 58 ~p~vll~HG~~g~---~~~-~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~------ 127 (324)
T PRK10985 58 KPRLVLFHGLEGS---FNS-PYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHRIYHSGETEDARFFLRWLQRE------ 127 (324)
T ss_pred CCEEEEeCCCCCC---CcC-HHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcceECCCchHHHHHHHHHHHHh------
Confidence 3799999995432 221 234445666778899999999998643221 23568999999999875
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+++++||||||.+++.++.+.
T Consensus 128 -------~~~~~~~~vG~S~GG~i~~~~~~~~ 152 (324)
T PRK10985 128 -------FGHVPTAAVGYSLGGNMLACLLAKE 152 (324)
T ss_pred -------CCCCCEEEEEecchHHHHHHHHHhh
Confidence 3346899999999999887776654
No 32
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.70 E-value=3e-16 Score=114.16 Aligned_cols=174 Identities=21% Similarity=0.250 Sum_probs=117.3
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC----CchhhHHHHHHHHHHhhccCCCCCCc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL----PIAHEDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~----~~~~~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
.++|||.||...-.| ........+....+++++.+||++...... ....+|+.++++||++..
T Consensus 60 ~~~lly~hGNa~Dlg-----q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~-------- 126 (258)
T KOG1552|consen 60 HPTLLYSHGNAADLG-----QMVELFKELSIFLNCNVVSYDYSGYGRSSGKPSERNLYADIKAVYEWLRNRY-------- 126 (258)
T ss_pred ceEEEEcCCcccchH-----HHHHHHHHHhhcccceEEEEecccccccCCCcccccchhhHHHHHHHHHhhc--------
Confidence 378999999633222 122333444455699999999998654322 245689999999999863
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhc---cCCCCCC-------CCCccCC-CCCcccccCCCCcEEEEe
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMC---PTSAGFE-------EDPILNP-ALDPNLKMMRSDRVLVCV 145 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~-~~~~~~~~~~~~p~li~~ 145 (208)
+ .+++|+|+|+|+|...++.+|.+.+ ..+++ |..++.. ...+... ...+..+.+.. |++++|
T Consensus 127 ---g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~d~f~~i~kI~~i~~-PVLiiH 199 (258)
T KOG1552|consen 127 ---G-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCFDAFPNIEKISKITC-PVLIIH 199 (258)
T ss_pred ---C-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEeeccccccCcceeccC-CEEEEe
Confidence 1 6799999999999999999999874 22211 1111110 0000000 11445566666 999999
Q ss_pred eCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 146 AEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 146 G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
|++|.+++ ++.++++..++. ++-....|++|...... .++++.+.+|+.
T Consensus 200 gtdDevv~~sHg~~Lye~~k~~-----~epl~v~g~gH~~~~~~------~~yi~~l~~f~~ 250 (258)
T KOG1552|consen 200 GTDDEVVDFSHGKALYERCKEK-----VEPLWVKGAGHNDIELY------PEYIEHLRRFIS 250 (258)
T ss_pred cccCceecccccHHHHHhcccc-----CCCcEEecCCCcccccC------HHHHHHHHHHHH
Confidence 99999886 778999988763 56777789999755433 577888888875
No 33
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.70 E-value=8.7e-16 Score=118.52 Aligned_cols=177 Identities=14% Similarity=0.175 Sum_probs=103.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-----chhhH-HHHHHHHHHhhccCCCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-----IAHED-SWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-----~~~~d-~~~~~~~l~~~~~~~~~~~ 75 (208)
|+|||+||.+.. .. .|.. +...+.+.||.|+++|.|+......+ ...++ +....+.+.+
T Consensus 47 ~~lvliHG~~~~---~~--~w~~-~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~--------- 111 (302)
T PRK00870 47 PPVLLLHGEPSW---SY--LYRK-MIPILAAAGHRVIAPDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQ--------- 111 (302)
T ss_pred CEEEEECCCCCc---hh--hHHH-HHHHHHhCCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHH---------
Confidence 789999995422 11 2443 44555666999999999986544321 12233 2333333333
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccC--------------------------------------CC
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPT--------------------------------------SA 117 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~--------------------------------------~~ 117 (208)
.+..++.|+|||+||.+|+.++.+++......+-. ..
T Consensus 112 -----l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (302)
T PRK00870 112 -----LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVR 186 (302)
T ss_pred -----cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccc
Confidence 33468999999999999999998762111000000 00
Q ss_pred CCC---CCCccC---------------------CC---C------CcccccCCCCcEEEEeeCCCCChhh-HHHHHHHHH
Q 042897 118 GFE---EDPILN---------------------PA---L------DPNLKMMRSDRVLVCVAEKDGLRNR-GVYYYETLK 163 (208)
Q Consensus 118 ~~~---~~~~~~---------------------~~---~------~~~~~~~~~~p~li~~G~~D~~~~~-~~~~~~~l~ 163 (208)
... ...+.. +. . ...+..+.. |+++++|++|.+++. .+.+.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-P~lii~G~~D~~~~~~~~~~~~~~~ 265 (302)
T PRK00870 187 DLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDK-PFLTAFSDSDPITGGGDAILQKRIP 265 (302)
T ss_pred cCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCC-ceEEEecCCCCcccCchHHHHhhcc
Confidence 000 000000 00 0 011244555 999999999998863 344444443
Q ss_pred hcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 164 KSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 164 ~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
... .+++..+++++|.... +..+++.+.|.+|+++|
T Consensus 266 ~~~---~~~~~~i~~~gH~~~~-----e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 266 GAA---GQPHPTIKGAGHFLQE-----DSGEELAEAVLEFIRAT 301 (302)
T ss_pred ccc---ccceeeecCCCccchh-----hChHHHHHHHHHHHhcC
Confidence 221 2347889999996443 44578999999999886
No 34
>PLN02511 hydrolase
Probab=99.69 E-value=2.2e-15 Score=119.94 Aligned_cols=88 Identities=19% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC-------CchhhHHHHHHHHHHhhccCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL-------PIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~-------~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
.|+||++||.+.. ..+ .|...+...+.+.||.|+++|+|+..+... ....+|+.++++++...
T Consensus 100 ~p~vvllHG~~g~---s~~-~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~------ 169 (388)
T PLN02511 100 APVLILLPGLTGG---SDD-SYVRHMLLRARSKGWRVVVFNSRGCADSPVTTPQFYSASFTGDLRQVVDHVAGR------ 169 (388)
T ss_pred CCEEEEECCCCCC---CCC-HHHHHHHHHHHHCCCEEEEEecCCCCCCCCCCcCEEcCCchHHHHHHHHHHHHH------
Confidence 3799999995432 211 233333444566799999999998654321 24578999999999875
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+++++|||+||.+++.++.+.
T Consensus 170 -------~~~~~~~lvG~SlGg~i~~~yl~~~ 194 (388)
T PLN02511 170 -------YPSANLYAAGWSLGANILVNYLGEE 194 (388)
T ss_pred -------CCCCCEEEEEechhHHHHHHHHHhc
Confidence 3346899999999999999887654
No 35
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.69 E-value=4e-15 Score=113.05 Aligned_cols=86 Identities=21% Similarity=0.166 Sum_probs=58.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC------chhhHHHHHHHHHHhhccCCCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP------IAHEDSWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~------~~~~d~~~~~~~l~~~~~~~~~~~ 75 (208)
|+||++||+++... .+...+..++.+.||.|+.+|+|+......+ ..+++..+.+..+.+.
T Consensus 26 ~~vl~~hG~~g~~~-----~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~-------- 92 (288)
T TIGR01250 26 IKLLLLHGGPGMSH-----EYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREK-------- 92 (288)
T ss_pred CeEEEEcCCCCccH-----HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHH--------
Confidence 68999999653321 2345566777777999999999976543322 1234444434334333
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+..+++|+|||+||.+++.++...
T Consensus 93 -----~~~~~~~liG~S~Gg~ia~~~a~~~ 117 (288)
T TIGR01250 93 -----LGLDKFYLLGHSWGGMLAQEYALKY 117 (288)
T ss_pred -----cCCCcEEEEEeehHHHHHHHHHHhC
Confidence 3446799999999999999998765
No 36
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.68 E-value=6.7e-15 Score=117.80 Aligned_cols=176 Identities=14% Similarity=0.110 Sum_probs=103.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC----CchhhHHHHHHHHHHhhccCCCCCCc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL----PIAHEDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~----~~~~~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
+|+||++||.+.. .. ..+ ..+...++++||.|+++|+++.+.... ........++++++.....
T Consensus 194 ~P~Vli~gG~~~~---~~-~~~-~~~~~~La~~Gy~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~l~~~~~------- 261 (414)
T PRK05077 194 FPTVLVCGGLDSL---QT-DYY-RLFRDYLAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNALPNVPW------- 261 (414)
T ss_pred ccEEEEeCCcccc---hh-hhH-HHHHHHHHhCCCEEEEECCCCCCCCCCCCccccHHHHHHHHHHHHHhCcc-------
Confidence 4777766663321 11 123 334556678899999999997654321 1122233567888877532
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCC---------------------------CCCC-CCC-----
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTS---------------------------AGFE-EDP----- 123 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~---------------------------~~~~-~~~----- 123 (208)
+|.++|+++|||+||++|+.++...+..+...+... .+.. .+.
T Consensus 262 ----vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~~~~~la~~lg~~~~~~~~l~~ 337 (414)
T PRK05077 262 ----VDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEMYLDVLASRLGMHDASDEALRV 337 (414)
T ss_pred ----cCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHHHHHHHHHHhCCCCCChHHHHH
Confidence 788999999999999999999876421111111000 0000 000
Q ss_pred ---ccCCCCCccc-ccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHH
Q 042897 124 ---ILNPALDPNL-KMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFL 197 (208)
Q Consensus 124 ---~~~~~~~~~~-~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 197 (208)
..+......+ ..++. |+|+++|++|++++ .++.+.+.. . +.+++.+|+. |.+ +..++++
T Consensus 338 ~l~~~sl~~~~~l~~~i~~-PvLiI~G~~D~ivP~~~a~~l~~~~--~----~~~l~~i~~~-~~~-------e~~~~~~ 402 (414)
T PRK05077 338 ELNRYSLKVQGLLGRRCPT-PMLSGYWKNDPFSPEEDSRLIASSS--A----DGKLLEIPFK-PVY-------RNFDKAL 402 (414)
T ss_pred HhhhccchhhhhhccCCCC-cEEEEecCCCCCCCHHHHHHHHHhC--C----CCeEEEccCC-Ccc-------CCHHHHH
Confidence 0000000011 34555 99999999999886 334333222 1 5688999985 322 3447899
Q ss_pred HHHHHHHHhc
Q 042897 198 QKLVNFIKST 207 (208)
Q Consensus 198 ~~i~~fl~~~ 207 (208)
+.|.+||+++
T Consensus 403 ~~i~~wL~~~ 412 (414)
T PRK05077 403 QEISDWLEDR 412 (414)
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 37
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.67 E-value=3.8e-15 Score=110.79 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=99.2
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC---chhhHHHHHHHHHHhhccCCCCCCcc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP---IAHEDSWAGLEWVASHSYGQGPEPLL 77 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~---~~~~d~~~~~~~l~~~~~~~~~~~~~ 77 (208)
.|+||++||.|.... .|... ...+. .||.|+++|+++......+ ...++..+.+..+.+.
T Consensus 13 ~~~li~~hg~~~~~~-----~~~~~-~~~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~---------- 75 (251)
T TIGR02427 13 APVLVFINSLGTDLR-----MWDPV-LPALT-PDFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDH---------- 75 (251)
T ss_pred CCeEEEEcCcccchh-----hHHHH-HHHhh-cccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----------
Confidence 378999999543221 23333 34444 4899999999976543222 1233333333333332
Q ss_pred cCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCC------------------------------------CCC-
Q 042897 78 NRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSA------------------------------------GFE- 120 (208)
Q Consensus 78 ~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~------------------------------------~~~- 120 (208)
.+.++++|+|||+||.+++.++.+........+.... ...
T Consensus 76 ---~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (251)
T TIGR02427 76 ---LGIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFRE 152 (251)
T ss_pred ---hCCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHccccccc
Confidence 3446899999999999999988876322222111000 000
Q ss_pred CCCc-----------------------cC-CCCCcccccCCCCcEEEEeeCCCCChhh--HHHHHHHHHhcCCCcceEEE
Q 042897 121 EDPI-----------------------LN-PALDPNLKMMRSDRVLVCVAEKDGLRNR--GVYYYETLKKSEWHGKAEFY 174 (208)
Q Consensus 121 ~~~~-----------------------~~-~~~~~~~~~~~~~p~li~~G~~D~~~~~--~~~~~~~l~~~g~~~~~~~~ 174 (208)
.... .. ......+..+.. |+++++|++|.+++. .+.+.+.+. +.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Pvlii~g~~D~~~~~~~~~~~~~~~~------~~~~~ 225 (251)
T TIGR02427 153 AHPARLDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAV-PTLCIAGDQDGSTPPELVREIADLVP------GARFA 225 (251)
T ss_pred CChHHHHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCC-CeEEEEeccCCcCChHHHHHHHHhCC------CceEE
Confidence 0000 00 000122334455 999999999998863 233333321 56889
Q ss_pred EeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 175 QTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 175 ~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
.+++++|.... +..+++.+.+.+|++
T Consensus 226 ~~~~~gH~~~~-----~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 226 EIRGAGHIPCV-----EQPEAFNAALRDFLR 251 (251)
T ss_pred EECCCCCcccc-----cChHHHHHHHHHHhC
Confidence 99999996544 334778888888874
No 38
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.67 E-value=6.7e-15 Score=113.14 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=45.9
Q ss_pred cccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 133 LKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+..+.. |+++++|++|.+++.. ..+.+.+.- ...+++.++++||.... +..+++.+.|.+|++++
T Consensus 230 l~~i~~-P~lvi~G~~D~~~~~~--~~~~~~~~~--~~~~~~~i~~~gH~~~~-----e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 230 LPAVKC-PVLIAWGEKDPWEPVE--LGRAYANFD--AVEDFIVLPGVGHCPQD-----EAPELVNPLIESFVARH 294 (294)
T ss_pred HhhcCC-CeEEEEecCCCCCChH--HHHHHHhcC--CccceEEeCCCCCChhh-----hCHHHHHHHHHHHHhcC
Confidence 445555 9999999999987521 112233321 15689999999995443 55688999999999875
No 39
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.67 E-value=6.1e-15 Score=109.51 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=55.2
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-----chhhHHHHH-HHHHHhhccCCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-----IAHEDSWAG-LEWVASHSYGQGPE 74 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-----~~~~d~~~~-~~~l~~~~~~~~~~ 74 (208)
.|+||++||.+.. .. .|... ...++ .|+.|+.+|+++......+ ...++.... +..+.+.
T Consensus 1 ~~~vv~~hG~~~~---~~--~~~~~-~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~------- 66 (251)
T TIGR03695 1 KPVLVFLHGFLGS---GA--DWQAL-IELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQ------- 66 (251)
T ss_pred CCEEEEEcCCCCc---hh--hHHHH-HHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHH-------
Confidence 4899999995432 22 23343 34444 6999999999976544322 122333322 3333332
Q ss_pred CcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 75 PLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 75 ~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.++++|+|||+||.+|+.++.+.
T Consensus 67 ------~~~~~~~l~G~S~Gg~ia~~~a~~~ 91 (251)
T TIGR03695 67 ------LGIEPFFLVGYSMGGRIALYYALQY 91 (251)
T ss_pred ------cCCCeEEEEEeccHHHHHHHHHHhC
Confidence 4457899999999999999999875
No 40
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.66 E-value=1.3e-14 Score=109.16 Aligned_cols=175 Identities=12% Similarity=0.075 Sum_probs=99.3
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCc--hhhH-HHHHHHHHHhhccCCCCCCccc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPI--AHED-SWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~--~~~d-~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
|+||++||.+.. .. .|...... +.+ +|.|+.+|.|+......+. ..++ +..+.+++..
T Consensus 17 ~~iv~lhG~~~~---~~--~~~~~~~~-l~~-~~~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~------------ 77 (255)
T PRK10673 17 SPIVLVHGLFGS---LD--NLGVLARD-LVN-DHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDA------------ 77 (255)
T ss_pred CCEEEECCCCCc---hh--HHHHHHHH-Hhh-CCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH------------
Confidence 789999995432 22 23333333 344 7999999999765333221 1222 2222333322
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCC-----------------------CCC------------CCC
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSA-----------------------GFE------------EDP 123 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~-----------------------~~~------------~~~ 123 (208)
...+++.|+|||+||.+|+.++.+.......++.... ... ...
T Consensus 78 --l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (255)
T PRK10673 78 --LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNE 155 (255)
T ss_pred --cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCC
Confidence 2346799999999999999998876222211110000 000 000
Q ss_pred ---------------c-cC-C---------CCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeC
Q 042897 124 ---------------I-LN-P---------ALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTL 177 (208)
Q Consensus 124 ---------------~-~~-~---------~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 177 (208)
. .. + .....+..+.. |+++++|++|..++. ...+.+.+..- ++++..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~l~i~G~~D~~~~~--~~~~~~~~~~~--~~~~~~~~ 230 (255)
T PRK10673 156 EGVIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPH-PALFIRGGNSPYVTE--AYRDDLLAQFP--QARAHVIA 230 (255)
T ss_pred HHHHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCC-CeEEEECCCCCCCCH--HHHHHHHHhCC--CcEEEEeC
Confidence 0 00 0 00011233444 999999999997752 22333333321 67889999
Q ss_pred CCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 178 GEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 178 ~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+++|.... +..+++.+.|.+||+++
T Consensus 231 ~~gH~~~~-----~~p~~~~~~l~~fl~~~ 255 (255)
T PRK10673 231 GAGHWVHA-----EKPDAVLRAIRRYLNDK 255 (255)
T ss_pred CCCCeeec-----cCHHHHHHHHHHHHhcC
Confidence 99995443 44578999999999864
No 41
>PLN00021 chlorophyllase
Probab=99.65 E-value=1.2e-14 Score=111.93 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=99.9
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
.|+|||+||+++... .| ..+.+.+++.||.|+++|++..........++|+.++++|+.+........ ...
T Consensus 52 ~PvVv~lHG~~~~~~-----~y-~~l~~~Las~G~~VvapD~~g~~~~~~~~~i~d~~~~~~~l~~~l~~~l~~---~~~ 122 (313)
T PLN00021 52 YPVLLFLHGYLLYNS-----FY-SQLLQHIASHGFIVVAPQLYTLAGPDGTDEIKDAAAVINWLSSGLAAVLPE---GVR 122 (313)
T ss_pred CCEEEEECCCCCCcc-----cH-HHHHHHHHhCCCEEEEecCCCcCCCCchhhHHHHHHHHHHHHhhhhhhccc---ccc
Confidence 489999999775321 23 344555677799999999775433334455678888899988643221100 112
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHH-----HhhhccCC--CCC----CCCCccCCCCCcccccCCCCcEEEEeeCCC
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEM-----YAYMCPTS--AGF----EEDPILNPALDPNLKMMRSDRVLVCVAEKD 149 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~-----~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~p~li~~G~~D 149 (208)
.+.++++|+|||+||.+|+.++.+.... +...+... .+. ...+.... .......+.. |++++.++.|
T Consensus 123 ~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~~~p~il~-~~~~s~~~~~-P~liig~g~~ 200 (313)
T PLN00021 123 PDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQTPPPVLT-YAPHSFNLDI-PVLVIGTGLG 200 (313)
T ss_pred cChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccCCCCcccc-cCcccccCCC-CeEEEecCCC
Confidence 6778999999999999999999876321 11111100 000 01111111 1111222444 8999999976
Q ss_pred C-----C----hh---hHHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 150 G-----L----RN---RGVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 150 ~-----~----~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
. + .+ ...++++.++. ++.....++++|.-.
T Consensus 201 ~~~~~~~~p~~ap~~~~~~~f~~~~~~-----~~~~~~~~~~gH~~~ 242 (313)
T PLN00021 201 GEPRNPLFPPCAPDGVNHAEFFNECKA-----PAVHFVAKDYGHMDM 242 (313)
T ss_pred cccccccccccCCCCCCHHHHHHhcCC-----CeeeeeecCCCccee
Confidence 3 1 11 33667666543 567778889999643
No 42
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.1e-15 Score=125.67 Aligned_cols=189 Identities=13% Similarity=0.137 Sum_probs=130.1
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-----------CCchhhHHHHHHHHHHhhcc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-----------LPIAHEDSWAGLEWVASHSY 69 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-----------~~~~~~d~~~~~~~l~~~~~ 69 (208)
+|+|+.+|||........ .....+...++...|++|+.+|+|+++... ....++|+..+++++.+...
T Consensus 526 yPllv~~yGGP~sq~v~~-~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~ 604 (755)
T KOG2100|consen 526 YPLLVVVYGGPGSQSVTS-KFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPF 604 (755)
T ss_pred CCEEEEecCCCCcceeee-eEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhccc
Confidence 599999999885222211 122344456788899999999999875332 23467899999999988752
Q ss_pred CCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHH-HHHhhhccCC--------CCCCCCC-----------ccCCCC
Q 042897 70 GQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLD-EMYAYMCPTS--------AGFEEDP-----------ILNPAL 129 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~-~~~~~~~~~~--------~~~~~~~-----------~~~~~~ 129 (208)
+|.+||.|+|+|.||++++.++.... ..+++..... .....+. +.....
T Consensus 605 -----------iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg~p~~~~~~y~e~~~ 673 (755)
T KOG2100|consen 605 -----------IDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMGLPSENDKGYEESSV 673 (755)
T ss_pred -----------ccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcCCCccccchhhhccc
Confidence 99999999999999999999988763 3333311110 0000000 111122
Q ss_pred CcccccCCCCcEEEEeeCCCCCh--hhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 130 DPNLKMMRSDRVLVCVAEKDGLR--NRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 130 ~~~~~~~~~~p~li~~G~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
......+..+-.|++||+.|..+ +++..+.++|+.+|+ +.+...||+.+|++.... ........+..|+.++
T Consensus 674 ~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv--~~~~~vypde~H~is~~~----~~~~~~~~~~~~~~~~ 747 (755)
T KOG2100|consen 674 SSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGV--PFRLLVYPDENHGISYVE----VISHLYEKLDRFLRDC 747 (755)
T ss_pred cchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCC--ceEEEEeCCCCccccccc----chHHHHHHHHHHHHHH
Confidence 23334444324699999999977 688999999999998 899999999999876532 2245677788888743
No 43
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.65 E-value=8.6e-15 Score=112.24 Aligned_cols=183 Identities=17% Similarity=0.145 Sum_probs=109.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC---------CCchhhHHHHHHHHHHhhccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH---------LPIAHEDSWAGLEWVASHSYGQG 72 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~---------~~~~~~d~~~~~~~l~~~~~~~~ 72 (208)
.+||++||.+-..+. ...+...+..+||.|+.+|.|+.+... |..-..|+...++.+...
T Consensus 35 g~Vvl~HG~~Eh~~r------y~~la~~l~~~G~~V~~~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~----- 103 (298)
T COG2267 35 GVVVLVHGLGEHSGR------YEELADDLAARGFDVYALDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEP----- 103 (298)
T ss_pred cEEEEecCchHHHHH------HHHHHHHHHhCCCEEEEecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhcc-----
Confidence 479999996644332 233566778889999999999765432 222334444444444332
Q ss_pred CCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHH-----------------------------hhh---ccCCC---
Q 042897 73 PEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMY-----------------------------AYM---CPTSA--- 117 (208)
Q Consensus 73 ~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~-----------------------------~~~---~~~~~--- 117 (208)
....+++|+||||||.+|+..+.+....+ ... ++...
T Consensus 104 --------~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 175 (298)
T COG2267 104 --------DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKLLGRIRPKLPVDSNLL 175 (298)
T ss_pred --------CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhcccccccccccccCcccc
Confidence 23478999999999999999998871000 000 00010
Q ss_pred -CCC---------------CCCccCC---------------C--CCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHh
Q 042897 118 -GFE---------------EDPILNP---------------A--LDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKK 164 (208)
Q Consensus 118 -~~~---------------~~~~~~~---------------~--~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~ 164 (208)
... .+|.... . .......+.. |+++++|++|.+++..+...+..+.
T Consensus 176 ~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~-PvLll~g~~D~vv~~~~~~~~~~~~ 254 (298)
T COG2267 176 EGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIAL-PVLLLQGGDDRVVDNVEGLARFFER 254 (298)
T ss_pred cCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccC-CEEEEecCCCccccCcHHHHHHHHh
Confidence 000 1111000 0 0011222233 9999999999988633333444444
Q ss_pred cCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 165 SEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 165 ~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+.+ ++++..++|+.|...+ +....+ +++++++.+|+.++
T Consensus 255 ~~~~-~~~~~~~~g~~He~~~-E~~~~r-~~~~~~~~~~l~~~ 294 (298)
T COG2267 255 AGSP-DKELKVIPGAYHELLN-EPDRAR-EEVLKDILAWLAEA 294 (298)
T ss_pred cCCC-CceEEecCCcchhhhc-CcchHH-HHHHHHHHHHHHhh
Confidence 4432 5799999999996444 332222 78999999999875
No 44
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.65 E-value=1.5e-14 Score=110.32 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=101.2
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-----chhhHHHHHHHHHHhhccCCCCCCc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-----IAHEDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-----~~~~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
|.||++||.+.....- ..+...+..+ .+.||.|+++|+|+....... .....+....+.+.+
T Consensus 31 ~~ivllHG~~~~~~~~--~~~~~~~~~l-~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~---------- 97 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGW--SNYYRNIGPF-VDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDA---------- 97 (282)
T ss_pred CeEEEECCCCCchhhH--HHHHHHHHHH-HhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHH----------
Confidence 6799999954322110 0111223333 455999999999986544321 111122222333322
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCC-------------------------CC-----------CC
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTS-------------------------AG-----------FE 120 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~-------------------------~~-----------~~ 120 (208)
.+.++++++|||+||.+++.++.+++......+... .. ..
T Consensus 98 ----l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (282)
T TIGR03343 98 ----LDIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFL 173 (282)
T ss_pred ----cCCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCc
Confidence 445799999999999999999987633221111000 00 00
Q ss_pred CCC---------------ccCC------------------CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhc
Q 042897 121 EDP---------------ILNP------------------ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKS 165 (208)
Q Consensus 121 ~~~---------------~~~~------------------~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~ 165 (208)
.++ ...+ .....+..+.. |+++++|++|.+++ .++++.+.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-Pvlli~G~~D~~v~~~~~~~~~~~~~-- 250 (282)
T TIGR03343 174 FDQSLITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKA-KTLVTWGRDDRFVPLDHGLKLLWNMP-- 250 (282)
T ss_pred cCcccCcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCC-CEEEEEccCCCcCCchhHHHHHHhCC--
Confidence 000 0000 00112344555 99999999999875 3444544432
Q ss_pred CCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 166 EWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 166 g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
+++++.++++||.... +..+.+.+.|.+||++
T Consensus 251 ----~~~~~~i~~agH~~~~-----e~p~~~~~~i~~fl~~ 282 (282)
T TIGR03343 251 ----DAQLHVFSRCGHWAQW-----EHADAFNRLVIDFLRN 282 (282)
T ss_pred ----CCEEEEeCCCCcCCcc-----cCHHHHHHHHHHHhhC
Confidence 5688899999996444 4557888999999863
No 45
>PRK11071 esterase YqiA; Provisional
Probab=99.65 E-value=2.9e-14 Score=102.65 Aligned_cols=160 Identities=20% Similarity=0.238 Sum_probs=94.9
Q ss_pred CEEEEEcCCccccCCCCCchhH-HHHHHHHHh--CCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCccc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFK-RFLTSLVVK--ANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~-~~~~~~~~~--~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
|.||++||-+. +..+ |. ..+...+.+ .++.|+.+|.+..+ +++.+.+..+.+.
T Consensus 2 p~illlHGf~s---s~~~--~~~~~~~~~l~~~~~~~~v~~~dl~g~~--------~~~~~~l~~l~~~----------- 57 (190)
T PRK11071 2 STLLYLHGFNS---SPRS--AKATLLKNWLAQHHPDIEMIVPQLPPYP--------ADAAELLESLVLE----------- 57 (190)
T ss_pred CeEEEECCCCC---Ccch--HHHHHHHHHHHHhCCCCeEEeCCCCCCH--------HHHHHHHHHHHHH-----------
Confidence 78999999442 3322 22 234555554 37999999988642 3444444444443
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCC---------CCCCCCccC------C--------CCCccccc
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSA---------GFEEDPILN------P--------ALDPNLKM 135 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~------~--------~~~~~~~~ 135 (208)
.+.++++++|+|+||.+|+.++.+.........+... +...+++.. . .....+.
T Consensus 58 --~~~~~~~lvG~S~Gg~~a~~~a~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~- 134 (190)
T PRK11071 58 --HGGDPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQIDPLE- 134 (190)
T ss_pred --cCCCCeEEEEECHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCCccCC-
Confidence 3346899999999999999999876310000000000 000001110 0 0011122
Q ss_pred CCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 136 MRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 136 ~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
.+. |++++||++|++++ .+.++++. ++...++|++|.|... ++.++.|.+|++
T Consensus 135 ~~~-~v~iihg~~De~V~~~~a~~~~~~---------~~~~~~~ggdH~f~~~-------~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPD-LIWLLQQTGDEVLDYRQAVAYYAA---------CRQTVEEGGNHAFVGF-------ERYFNQIVDFLG 189 (190)
T ss_pred Chh-hEEEEEeCCCCcCCHHHHHHHHHh---------cceEEECCCCcchhhH-------HHhHHHHHHHhc
Confidence 343 88999999999986 44554441 2445679999988553 678899999975
No 46
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.64 E-value=9.4e-15 Score=111.00 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=54.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC----CchhhHHHHHHHHHHhhccCCCCCCcc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL----PIAHEDSWAGLEWVASHSYGQGPEPLL 77 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~----~~~~~d~~~~~~~l~~~~~~~~~~~~~ 77 (208)
|+||++||.+.. .. .|..... .+++ +|.|+.+|+++.+.... ...+++..+.+..+.+.
T Consensus 29 ~~vv~~hG~~~~---~~--~~~~~~~-~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~i~~---------- 91 (278)
T TIGR03056 29 PLLLLLHGTGAS---TH--SWRDLMP-PLAR-SFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCAA---------- 91 (278)
T ss_pred CeEEEEcCCCCC---HH--HHHHHHH-HHhh-CcEEEeecCCCCCCCCCccccCCCHHHHHHHHHHHHHH----------
Confidence 789999995432 21 2444433 4444 69999999997654322 22344444433333332
Q ss_pred cCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 78 NRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 78 ~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.++++|+|||+||.+++.++.+.
T Consensus 92 ---~~~~~~~lvG~S~Gg~~a~~~a~~~ 116 (278)
T TIGR03056 92 ---EGLSPDGVIGHSAGAAIALRLALDG 116 (278)
T ss_pred ---cCCCCceEEEECccHHHHHHHHHhC
Confidence 3346789999999999999998776
No 47
>PLN02965 Probable pheophorbidase
Probab=99.64 E-value=6.7e-14 Score=105.48 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=43.8
Q ss_pred cCCCCcEEEEeeCCCCChhh--HHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 135 MMRSDRVLVCVAEKDGLRNR--GVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 135 ~~~~~p~li~~G~~D~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+.. |+++++|++|.+++. .+.+.+.+. ++++++++++||... .++.+++.+.|.+|+++.
T Consensus 191 ~i~v-P~lvi~g~~D~~~~~~~~~~~~~~~~------~a~~~~i~~~GH~~~-----~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 191 AEKV-PRVYIKTAKDNLFDPVRQDVMVENWP------PAQTYVLEDSDHSAF-----FSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred cCCC-CEEEEEcCCCCCCCHHHHHHHHHhCC------cceEEEecCCCCchh-----hcCHHHHHHHHHHHHHHh
Confidence 3555 999999999998853 233332222 568899999999544 455688999999998753
No 48
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.64 E-value=1.4e-14 Score=108.19 Aligned_cols=86 Identities=19% Similarity=0.081 Sum_probs=55.0
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
.|+||++||.+... . .|..... .+ + +|.|+++|+|+......+.. .+.....+.+.+..+.
T Consensus 2 ~p~vvllHG~~~~~---~--~w~~~~~-~l-~-~~~vi~~D~~G~G~S~~~~~-~~~~~~~~~l~~~l~~---------- 62 (242)
T PRK11126 2 LPWLVFLHGLLGSG---Q--DWQPVGE-AL-P-DYPRLYIDLPGHGGSAAISV-DGFADVSRLLSQTLQS---------- 62 (242)
T ss_pred CCEEEEECCCCCCh---H--HHHHHHH-Hc-C-CCCEEEecCCCCCCCCCccc-cCHHHHHHHHHHHHHH----------
Confidence 38899999965332 1 3444444 34 3 79999999997654332211 1333333333333221
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...++++++||||||.+|+.++.++
T Consensus 63 ~~~~~~~lvG~S~Gg~va~~~a~~~ 87 (242)
T PRK11126 63 YNILPYWLVGYSLGGRIAMYYACQG 87 (242)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhC
Confidence 3357999999999999999999876
No 49
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.64 E-value=2.4e-14 Score=109.04 Aligned_cols=181 Identities=15% Similarity=0.131 Sum_probs=107.4
Q ss_pred CEEEEEcCCc-cccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-----CCchhhHHHHHHHHHHhhccCCCCCC
Q 042897 2 PLLIHYHGGG-FCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-----LPIAHEDSWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 2 P~vi~~HGg~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-----~~~~~~d~~~~~~~l~~~~~~~~~~~ 75 (208)
|.||++|||. +..++.. ....+.+.++++||.|+.+|+++..... +....+|+.++++++++..
T Consensus 27 ~~vv~i~gg~~~~~g~~~---~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~------- 96 (274)
T TIGR03100 27 TGVLIVVGGPQYRVGSHR---QFVLLARRLAEAGFPVLRFDYRGMGDSEGENLGFEGIDADIAAAIDAFREAA------- 96 (274)
T ss_pred CeEEEEeCCccccCCchh---HHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhC-------
Confidence 4567777654 3333321 1233466677789999999999765432 2234578999999987642
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHHHH----------------------------------HHhhhccCCCCCC-
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQLDE----------------------------------MYAYMCPTSAGFE- 120 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~----------------------------------~~~~~~~~~~~~~- 120 (208)
...++|+++|||+||.+++.++..... .|....+......
T Consensus 97 -----~g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 171 (274)
T TIGR03100 97 -----PHLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVRTEAAQAASRIRHYYLGQLLSADFWRKLLSGEVNLGS 171 (274)
T ss_pred -----CCCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccCCcccchHHHHHHHHHHHHhChHHHHHhcCCCccHHH
Confidence 123679999999999999988765300 0000000000000
Q ss_pred -----CC--C-c--cC--CCC-------CcccccCCCCcEEEEeeCCCCChhhH-------HHHHHHHHhcCCCcceEEE
Q 042897 121 -----ED--P-I--LN--PAL-------DPNLKMMRSDRVLVCVAEKDGLRNRG-------VYYYETLKKSEWHGKAEFY 174 (208)
Q Consensus 121 -----~~--~-~--~~--~~~-------~~~~~~~~~~p~li~~G~~D~~~~~~-------~~~~~~l~~~g~~~~~~~~ 174 (208)
.+ . + .. +.. ...+..+.. |+++++|+.|...+.. +.+.+.+... ++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-P~ll~~g~~D~~~~~~~~~~~~~~~~~~~l~~~----~v~~~ 246 (274)
T TIGR03100 172 SLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQG-PVLFILSGNDLTAQEFADSVLGEPAWRGALEDP----GIERV 246 (274)
T ss_pred HHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCC-cEEEEEcCcchhHHHHHHHhccChhhHHHhhcC----CeEEE
Confidence 00 0 0 00 000 122334554 9999999999865422 2333334333 78999
Q ss_pred EeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 175 QTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 175 ~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
.+++++|.... ....+++.+.|.+||++
T Consensus 247 ~~~~~~H~l~~----e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 247 EIDGADHTFSD----RVWREWVAARTTEWLRR 274 (274)
T ss_pred ecCCCCccccc----HHHHHHHHHHHHHHHhC
Confidence 99999995322 23446788999999963
No 50
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.61 E-value=4.2e-14 Score=107.76 Aligned_cols=173 Identities=18% Similarity=0.178 Sum_probs=99.4
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC---chhhHHHHHHHHHHhhccCCCCCCccc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP---IAHEDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~---~~~~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
|.|||+||.+... . .|...+. .+.+ ++.|+++|+++......+ ...++..+.+.-+.+.
T Consensus 26 ~plvllHG~~~~~---~--~w~~~~~-~L~~-~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~----------- 87 (276)
T TIGR02240 26 TPLLIFNGIGANL---E--LVFPFIE-ALDP-DLEVIAFDVPGVGGSSTPRHPYRFPGLAKLAARMLDY----------- 87 (276)
T ss_pred CcEEEEeCCCcch---H--HHHHHHH-Hhcc-CceEEEECCCCCCCCCCCCCcCcHHHHHHHHHHHHHH-----------
Confidence 6799999944332 1 2444433 3444 799999999987654322 1223322222222222
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhc----------------------cC------CC---------C--C
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMC----------------------PT------SA---------G--F 119 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~----------------------~~------~~---------~--~ 119 (208)
.+.++++|+|||+||.+++.++.+++......+ .. .. . .
T Consensus 88 --l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (276)
T TIGR02240 88 --LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPSHGIHIAPDIYGGAF 165 (276)
T ss_pred --hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccccccchhhhhcccee
Confidence 334689999999999999999988621111100 00 00 0 0
Q ss_pred CCCCc--------cCC----------------CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEE
Q 042897 120 EEDPI--------LNP----------------ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEF 173 (208)
Q Consensus 120 ~~~~~--------~~~----------------~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~ 173 (208)
..++. ... .....+..+.. |+++++|++|++++ ..+.+.+.+. +.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-P~lii~G~~D~~v~~~~~~~l~~~~~------~~~~ 238 (276)
T TIGR02240 166 RRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQ-PTLVLAGDDDPIIPLINMRLLAWRIP------NAEL 238 (276)
T ss_pred eccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCC-CEEEEEeCCCCcCCHHHHHHHHHhCC------CCEE
Confidence 00000 000 00122345555 99999999999885 3344544432 4577
Q ss_pred EEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 174 YQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 174 ~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+.+++ ||.... +..+++.+.|.+|+++.
T Consensus 239 ~~i~~-gH~~~~-----e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 239 HIIDD-GHLFLI-----TRAEAVAPIIMKFLAEE 266 (276)
T ss_pred EEEcC-CCchhh-----ccHHHHHHHHHHHHHHh
Confidence 77776 995443 45578999999999864
No 51
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.61 E-value=3.4e-14 Score=105.41 Aligned_cols=169 Identities=19% Similarity=0.141 Sum_probs=100.2
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
|.||++||.+.. .. .|.. +...+.+ ++.|+.+|+++....... ...++.+..+.+.+. .
T Consensus 5 ~~iv~~HG~~~~---~~--~~~~-~~~~l~~-~~~vi~~d~~G~G~s~~~-~~~~~~~~~~~~~~~-------------~ 63 (245)
T TIGR01738 5 VHLVLIHGWGMN---AE--VFRC-LDEELSA-HFTLHLVDLPGHGRSRGF-GPLSLADAAEAIAAQ-------------A 63 (245)
T ss_pred ceEEEEcCCCCc---hh--hHHH-HHHhhcc-CeEEEEecCCcCccCCCC-CCcCHHHHHHHHHHh-------------C
Confidence 789999995432 22 2333 3444444 799999999976543221 123444555555553 2
Q ss_pred CCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCC-------------------------------------------C
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSA-------------------------------------------G 118 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~-------------------------------------------~ 118 (208)
.++++++|||+||.+++.++.+++......+.... .
T Consensus 64 -~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (245)
T TIGR01738 64 -PDPAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLG 142 (245)
T ss_pred -CCCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 26899999999999999998876332221110000 0
Q ss_pred CCC-C-----------CccCC---------------CCCcccccCCCCcEEEEeeCCCCChhh--HHHHHHHHHhcCCCc
Q 042897 119 FEE-D-----------PILNP---------------ALDPNLKMMRSDRVLVCVAEKDGLRNR--GVYYYETLKKSEWHG 169 (208)
Q Consensus 119 ~~~-~-----------~~~~~---------------~~~~~~~~~~~~p~li~~G~~D~~~~~--~~~~~~~l~~~g~~~ 169 (208)
... . ....+ .....+..+.. |+++++|++|.+++. .+.+.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-Pvlii~g~~D~~~~~~~~~~~~~~~~------ 215 (245)
T TIGR01738 143 TPTARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISV-PFLRLYGYLDGLVPAKVVPYLDKLAP------ 215 (245)
T ss_pred CCccchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCC-CEEEEeecCCcccCHHHHHHHHHhCC------
Confidence 000 0 00000 00112345555 999999999998852 233333221
Q ss_pred ceEEEEeCCCCccccccCCCCCchHHHHHHHHHHH
Q 042897 170 KAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFI 204 (208)
Q Consensus 170 ~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl 204 (208)
+++++.++++||.... +..+++.+.|.+|+
T Consensus 216 ~~~~~~~~~~gH~~~~-----e~p~~~~~~i~~fi 245 (245)
T TIGR01738 216 HSELYIFAKAAHAPFL-----SHAEAFCALLVAFK 245 (245)
T ss_pred CCeEEEeCCCCCCccc-----cCHHHHHHHHHhhC
Confidence 6789999999996444 45578888898885
No 52
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.4e-14 Score=115.32 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=130.9
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHH-HHHHHhCCcEEEEecCCCCCCC--CCC---------chhhHHHHHHHHHHhhc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFL-TSLVVKANIVAITIDYRLAPEH--HLP---------IAHEDSWAGLEWVASHS 68 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~-~~~~~~~g~~v~~~d~~~~~~~--~~~---------~~~~d~~~~~~~l~~~~ 68 (208)
.|+++++.||....-..++..+..++ ...++++||.|+.+|-|++... .|+ ..++|.-+++++|.++.
T Consensus 642 Yptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~ 721 (867)
T KOG2281|consen 642 YPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQT 721 (867)
T ss_pred CceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhc
Confidence 59999999998766554443233332 3567788999999999987422 232 35689999999999875
Q ss_pred cCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCC--------C-----------CccCCCC
Q 042897 69 YGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEE--------D-----------PILNPAL 129 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~--------~-----------~~~~~~~ 129 (208)
. -+|.+||+|-|+|+||+++++++++++..+++.+....-..+ + .+...+.
T Consensus 722 g----------fidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV 791 (867)
T KOG2281|consen 722 G----------FIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSV 791 (867)
T ss_pred C----------cccchheeEeccccccHHHHHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhH
Confidence 3 189999999999999999999999986666554442111000 0 0111111
Q ss_pred CcccccCCCC--cEEEEeeCCCCCh--hhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 130 DPNLKMMRSD--RVLVCVAEKDGLR--NRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 130 ~~~~~~~~~~--p~li~~G~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
...+..+|.. .++++||-.|+.+ -++..+...|-++|- +.++.+||+..|+.-+. +...-+-.++..|++
T Consensus 792 ~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagK--pyeL~IfP~ERHsiR~~----es~~~yE~rll~FlQ 865 (867)
T KOG2281|consen 792 AGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGK--PYELQIFPNERHSIRNP----ESGIYYEARLLHFLQ 865 (867)
T ss_pred HHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCC--ceEEEEccccccccCCC----ccchhHHHHHHHHHh
Confidence 2222233221 5999999999977 467778888888874 99999999999975442 223445567888887
Q ss_pred h
Q 042897 206 S 206 (208)
Q Consensus 206 ~ 206 (208)
+
T Consensus 866 ~ 866 (867)
T KOG2281|consen 866 E 866 (867)
T ss_pred h
Confidence 6
No 53
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.60 E-value=1.1e-13 Score=109.31 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=48.2
Q ss_pred cccCCCCcEEEEeeCCCCChhhH---HHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 133 LKMMRSDRVLVCVAEKDGLRNRG---VYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~~~---~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+..+.. |+++++|++|.+++.. .++.+.+.+.-- ++++++++++||.. ..+..+++.+.|.+||++.
T Consensus 288 l~~i~~-PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip--~~~l~~i~~aGH~~-----~~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 288 IPRISL-PILVLWGDQDPFTPLDGPVGKYFSSLPSQLP--NVTLYVLEGVGHCP-----HDDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred hhhcCC-CEEEEEeCCCCCcCchhhHHHHHHhhhccCC--ceEEEEcCCCCCCc-----cccCHHHHHHHHHHHHHhc
Confidence 344555 9999999999987532 233444544321 78999999999953 3456689999999999863
No 54
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.60 E-value=5.8e-14 Score=108.00 Aligned_cols=63 Identities=8% Similarity=-0.023 Sum_probs=44.5
Q ss_pred ccCCCCcEEEEeeCCCCCh-hh-HHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 134 KMMRSDRVLVCVAEKDGLR-NR-GVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 134 ~~~~~~p~li~~G~~D~~~-~~-~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
..+.. |+++++|++|.++ +. ..++...+.. +++++.++++||.... +..+++.+.|.+|+++.
T Consensus 225 ~~i~~-P~lii~G~~D~~~~~~~~~~~~~~~~~-----~~~~~~i~~~gH~~~~-----e~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 225 ATSDV-PKLLINAEPGAILTTGAIRDWCRSWPN-----QLEITVFGAGLHFAQE-----DSPEEIGAAIAAWLRRL 289 (295)
T ss_pred ccCCC-CeEEEeccCCcccCcHHHHHHHHHhhh-----hcceeeccCcchhhhh-----cCHHHHHHHHHHHHHHh
Confidence 33555 9999999999987 42 3333332221 4588889999996444 44588999999999864
No 55
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.60 E-value=6.7e-14 Score=97.35 Aligned_cols=173 Identities=21% Similarity=0.257 Sum_probs=114.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC--CCCC---CchhhHHHHHHHHHHhhccCCCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP--EHHL---PIAHEDSWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~~---~~~~~d~~~~~~~l~~~~~~~~~~~ 75 (208)
.|+.|.+|.-....|+.++ .....+.+.+.++|+.++.+|||+.. +..| -..++|+.++++|++..-.
T Consensus 28 ~~iAli~HPHPl~gGtm~n-kvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~hp------ 100 (210)
T COG2945 28 APIALICHPHPLFGGTMNN-KVVQTLARALVKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARHP------ 100 (210)
T ss_pred CceEEecCCCccccCccCC-HHHHHHHHHHHhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhCC------
Confidence 3788899986655566554 23455678889999999999999743 2333 3568999999999998742
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChhhH
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRNRG 155 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~ 155 (208)
+..-+-|+|+|-|++++++++.+....-... . ..+..+......+..-|. |.++++|+.|..++-.
T Consensus 101 ------~s~~~~l~GfSFGa~Ia~~la~r~~e~~~~i-s------~~p~~~~~dfs~l~P~P~-~~lvi~g~~Ddvv~l~ 166 (210)
T COG2945 101 ------DSASCWLAGFSFGAYIAMQLAMRRPEILVFI-S------ILPPINAYDFSFLAPCPS-PGLVIQGDADDVVDLV 166 (210)
T ss_pred ------CchhhhhcccchHHHHHHHHHHhccccccee-e------ccCCCCchhhhhccCCCC-CceeEecChhhhhcHH
Confidence 2233578999999999999998752111000 0 111111111223344455 9999999999766543
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 156 VYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
..+ +..+.. +.+++..++++|.|.. ....+.+.|.+|+.
T Consensus 167 ~~l-~~~~~~----~~~~i~i~~a~HFF~g------Kl~~l~~~i~~~l~ 205 (210)
T COG2945 167 AVL-KWQESI----KITVITIPGADHFFHG------KLIELRDTIADFLE 205 (210)
T ss_pred HHH-HhhcCC----CCceEEecCCCceecc------cHHHHHHHHHHHhh
Confidence 333 223333 7789999999997654 22567777888884
No 56
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.60 E-value=9e-14 Score=104.74 Aligned_cols=82 Identities=17% Similarity=0.025 Sum_probs=53.2
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
|.|||+||.+... . .|...+..+ .+ .|.|+++|+++......+.. ....+.++.+.+ .
T Consensus 14 ~~ivllHG~~~~~---~--~w~~~~~~L-~~-~~~vi~~Dl~G~G~S~~~~~-~~~~~~~~~l~~--------------~ 71 (256)
T PRK10349 14 VHLVLLHGWGLNA---E--VWRCIDEEL-SS-HFTLHLVDLPGFGRSRGFGA-LSLADMAEAVLQ--------------Q 71 (256)
T ss_pred CeEEEECCCCCCh---h--HHHHHHHHH-hc-CCEEEEecCCCCCCCCCCCC-CCHHHHHHHHHh--------------c
Confidence 4699999954322 1 244444444 44 69999999998654432221 123333444443 2
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..+++.++|||+||.+|+.++.+.
T Consensus 72 ~~~~~~lvGhS~Gg~ia~~~a~~~ 95 (256)
T PRK10349 72 APDKAIWLGWSLGGLVASQIALTH 95 (256)
T ss_pred CCCCeEEEEECHHHHHHHHHHHhC
Confidence 247899999999999999998876
No 57
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.58 E-value=6.8e-14 Score=110.84 Aligned_cols=173 Identities=17% Similarity=0.108 Sum_probs=101.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC---CchhhHHHHHHHHHHhhccCCCCCCccc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL---PIAHEDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~---~~~~~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
|+||++||.+... . .|... ...+.+ +|.|+++|+++...... ...++++.+.+..+.+.
T Consensus 132 ~~vl~~HG~~~~~---~--~~~~~-~~~l~~-~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~----------- 193 (371)
T PRK14875 132 TPVVLIHGFGGDL---N--NWLFN-HAALAA-GRPVIALDLPGHGASSKAVGAGSLDELAAAVLAFLDA----------- 193 (371)
T ss_pred CeEEEECCCCCcc---c--hHHHH-HHHHhc-CCEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHh-----------
Confidence 7899999855322 1 23333 334444 59999999997654321 22344444444443333
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCC------------------------------------CCCC--
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTS------------------------------------AGFE-- 120 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~------------------------------------~~~~-- 120 (208)
++..+++|+|||+||.+++.++.+............ ....
T Consensus 194 --~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (371)
T PRK14875 194 --LGIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQ 271 (371)
T ss_pred --cCCccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHH
Confidence 456789999999999999998876521111110000 0000
Q ss_pred ---------CCC------------ccCC-----CCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEE
Q 042897 121 ---------EDP------------ILNP-----ALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFY 174 (208)
Q Consensus 121 ---------~~~------------~~~~-----~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~ 174 (208)
... .... .....+..++. |+++++|++|.+++... .+.+. . ++++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~-Pvlii~g~~D~~vp~~~--~~~l~-~----~~~~~ 343 (371)
T PRK14875 272 MVEDLLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAI-PVLVIWGEQDRIIPAAH--AQGLP-D----GVAVH 343 (371)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCC-CEEEEEECCCCccCHHH--Hhhcc-C----CCeEE
Confidence 000 0000 00112344555 99999999999886321 12221 1 57899
Q ss_pred EeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 175 QTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 175 ~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.++++||.... +..+++.+.|.+|++++
T Consensus 344 ~~~~~gH~~~~-----e~p~~~~~~i~~fl~~~ 371 (371)
T PRK14875 344 VLPGAGHMPQM-----EAAADVNRLLAEFLGKA 371 (371)
T ss_pred EeCCCCCChhh-----hCHHHHHHHHHHHhccC
Confidence 99999996444 34478888999999864
No 58
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.56 E-value=1.1e-13 Score=105.96 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=57.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC----CchhhHHHHHHHHHHhhccCCCCCCcc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL----PIAHEDSWAGLEWVASHSYGQGPEPLL 77 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~----~~~~~d~~~~~~~l~~~~~~~~~~~~~ 77 (208)
|+|||+||.+. + ...|.. +...+.+ +|.|+++|+++...... ....++..+.+..+.+.
T Consensus 35 ~~iv~lHG~~~---~--~~~~~~-~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~---------- 97 (286)
T PRK03204 35 PPILLCHGNPT---W--SFLYRD-IIVALRD-RFRCVAPDYLGFGLSERPSGFGYQIDEHARVIGEFVDH---------- 97 (286)
T ss_pred CEEEEECCCCc---c--HHHHHH-HHHHHhC-CcEEEEECCCCCCCCCCCCccccCHHHHHHHHHHHHHH----------
Confidence 78999999541 1 112333 3344444 69999999998654332 23456666666666554
Q ss_pred cCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 78 NRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 78 ~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+..+++++|||+||.+++.++..+
T Consensus 98 ---~~~~~~~lvG~S~Gg~va~~~a~~~ 122 (286)
T PRK03204 98 ---LGLDRYLSMGQDWGGPISMAVAVER 122 (286)
T ss_pred ---hCCCCEEEEEECccHHHHHHHHHhC
Confidence 3457899999999999999998765
No 59
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.56 E-value=1.6e-14 Score=113.98 Aligned_cols=94 Identities=29% Similarity=0.462 Sum_probs=75.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCC-cEEEEecCCCCCCCC-------------CCchhhHHHHHHHHHHh
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKAN-IVAITIDYRLAPEHH-------------LPIAHEDSWAGLEWVAS 66 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~~-------------~~~~~~d~~~~~~~l~~ 66 (208)
+||+||||||+|..|+.....+. ...++++| ++||+++||++...- -.-.+.|+..+++|+++
T Consensus 94 ~PVmV~IHGG~y~~Gs~s~~~yd---gs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~ 170 (491)
T COG2272 94 LPVMVYIHGGGYIMGSGSEPLYD---GSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGLLDQILALKWVRD 170 (491)
T ss_pred CcEEEEEeccccccCCCcccccC---hHHHHhcCCEEEEEeCcccccceeeehhhccccccccccccHHHHHHHHHHHHH
Confidence 69999999999999987654332 33344556 999999999864221 11367899999999999
Q ss_pred hccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 67 HSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
++..++ .|+++|.|+|+|+||+.++.+++-.
T Consensus 171 NIe~FG--------GDp~NVTl~GeSAGa~si~~Lla~P 201 (491)
T COG2272 171 NIEAFG--------GDPQNVTLFGESAGAASILTLLAVP 201 (491)
T ss_pred HHHHhC--------CCccceEEeeccchHHHHHHhhcCc
Confidence 999988 8999999999999999998887744
No 60
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.55 E-value=3.6e-13 Score=104.76 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=122.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-------chhhHHHHHHHHHHhhccCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-------IAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-------~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
.|+||++|| ..|+..+ .+...+...+.++||.+++.+.|+..+.... ...+|+.++++++++.
T Consensus 125 ~P~vvilpG---ltg~S~~-~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~------ 194 (409)
T KOG1838|consen 125 DPIVVILPG---LTGGSHE-SYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIKKR------ 194 (409)
T ss_pred CcEEEEecC---CCCCChh-HHHHHHHHHHHhCCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHHHh------
Confidence 499999999 3343333 4667778888999999999999986544332 4579999999999997
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHH------------------------------HHHHhhh---------cc
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQL------------------------------DEMYAYM---------CP 114 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~------------------------------~~~~~~~---------~~ 114 (208)
....+++.+|+|+||++....+.+. ..++... ..
T Consensus 195 -------~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~~~l~~~l~~~~~~ 267 (409)
T KOG1838|consen 195 -------YPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYNRALTLNLKRIVLR 267 (409)
T ss_pred -------CCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHHHHHHHhHHHHHhh
Confidence 5567899999999999999888876 0000000 00
Q ss_pred C------------------------------CCCC-CCCCccC-CCCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHH
Q 042897 115 T------------------------------SAGF-EEDPILN-PALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETL 162 (208)
Q Consensus 115 ~------------------------------~~~~-~~~~~~~-~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l 162 (208)
. ..+. +.+.+.. .+....++.+.. |++.++..+|++++....-.+..
T Consensus 268 ~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs~~~v~~I~V-P~L~ina~DDPv~p~~~ip~~~~ 346 (409)
T KOG1838|consen 268 HRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASSSNYVDKIKV-PLLCINAADDPVVPEEAIPIDDI 346 (409)
T ss_pred hhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcchhhhcccccc-cEEEEecCCCCCCCcccCCHHHH
Confidence 0 0000 0111222 234556677777 99999999999997533334455
Q ss_pred HhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHH-HHHHHHh
Q 042897 163 KKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQK-LVNFIKS 206 (208)
Q Consensus 163 ~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~-i~~fl~~ 206 (208)
+++. ++-+.+...+||.- +.+...+....++++ +.+|+..
T Consensus 347 ~~np---~v~l~~T~~GGHlg-fleg~~p~~~~w~~~~l~ef~~~ 387 (409)
T KOG1838|consen 347 KSNP---NVLLVITSHGGHLG-FLEGLWPSARTWMDKLLVEFLGN 387 (409)
T ss_pred hcCC---cEEEEEeCCCceee-eeccCCCccchhHHHHHHHHHHH
Confidence 5542 78888888889953 223333355567777 7777653
No 61
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.55 E-value=5.5e-13 Score=106.69 Aligned_cols=83 Identities=27% Similarity=0.313 Sum_probs=53.2
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCc----hhhHHH-----HHHHHHHhhccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPI----AHEDSW-----AGLEWVASHSYGQG 72 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~----~~~d~~-----~~~~~l~~~~~~~~ 72 (208)
|+||++||.+.... .|...+..+ .+ +|.|+++|+|+......+. ..+++. ...+|+..
T Consensus 106 p~vvllHG~~~~~~-----~~~~~~~~L-~~-~~~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~------ 172 (402)
T PLN02894 106 PTLVMVHGYGASQG-----FFFRNFDAL-AS-RFRVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKA------ 172 (402)
T ss_pred CEEEEECCCCcchh-----HHHHHHHHH-Hh-CCEEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHH------
Confidence 78999999664321 234444443 44 6999999999865432221 112221 12233332
Q ss_pred CCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 73 PEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 73 ~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+..+++|+||||||.+|+.++.++
T Consensus 173 --------l~~~~~~lvGhS~GG~la~~~a~~~ 197 (402)
T PLN02894 173 --------KNLSNFILLGHSFGGYVAAKYALKH 197 (402)
T ss_pred --------cCCCCeEEEEECHHHHHHHHHHHhC
Confidence 3456899999999999999999886
No 62
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.55 E-value=2.2e-13 Score=106.44 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=44.3
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|+|+++|++|.+++ .++.+++.+... ++++..+++++|..... ...+++++.|.+||+.
T Consensus 272 P~Lii~G~~D~vv~~~~~~~~~~~~~~~----~~~l~~~~g~~H~i~~E----~~~~~v~~~i~~wL~~ 332 (332)
T TIGR01607 272 PILFIHSKGDCVCSYEGTVSFYNKLSIS----NKELHTLEDMDHVITIE----PGNEEVLKKIIEWISN 332 (332)
T ss_pred CEEEEEeCCCCccCHHHHHHHHHhccCC----CcEEEEECCCCCCCccC----CCHHHHHHHHHHHhhC
Confidence 99999999999875 445555544433 67899999999975542 2247899999999963
No 63
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.54 E-value=6e-14 Score=99.82 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=110.3
Q ss_pred HHHHHHHHhCCcEEEEecCCCCC----------------CCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceE
Q 042897 24 RFLTSLVVKANIVAITIDYRLAP----------------EHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVF 87 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~~~----------------~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 87 (208)
...++.++..||.|++||+-.+. ..+.+...+|+...++||+.+ .+..+|+
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~-------------g~~kkIG 123 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNH-------------GDSKKIG 123 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHc-------------CCcceee
Confidence 44567777779999999985441 123445678999999999965 6678999
Q ss_pred EeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhc
Q 042897 88 LAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKS 165 (208)
Q Consensus 88 l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~ 165 (208)
++|+++||.++..+..... .+........ +.....+...... |++++.|++|.+++ ...++.+.+++.
T Consensus 124 v~GfCwGak~vv~~~~~~~-~f~a~v~~hp--------s~~d~~D~~~vk~-Pilfl~ae~D~~~p~~~v~~~ee~lk~~ 193 (242)
T KOG3043|consen 124 VVGFCWGAKVVVTLSAKDP-EFDAGVSFHP--------SFVDSADIANVKA-PILFLFAELDEDVPPKDVKAWEEKLKEN 193 (242)
T ss_pred EEEEeecceEEEEeeccch-hheeeeEecC--------CcCChhHHhcCCC-CEEEEeecccccCCHHHHHHHHHHHhcC
Confidence 9999999999877665432 1221111111 1112334455555 99999999999875 445666777766
Q ss_pred CCCcceEEEEeCCCCccccc--cC----CCCCchHHHHHHHHHHHHhc
Q 042897 166 EWHGKAEFYQTLGEDHCFHM--FN----PKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 166 g~~~~~~~~~~~~~~H~~~~--~~----~~~~~~~~~~~~i~~fl~~~ 207 (208)
. ....++.+|++.+|+|.. .+ ......++.++++++|++++
T Consensus 194 ~-~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y 240 (242)
T KOG3043|consen 194 P-AVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHY 240 (242)
T ss_pred c-ccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHh
Confidence 4 134589999999999974 12 13345677888999999875
No 64
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.53 E-value=3.2e-14 Score=116.89 Aligned_cols=92 Identities=28% Similarity=0.459 Sum_probs=74.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCC-cEEEEecCCCCCCC---------CCCchhhHHHHHHHHHHhhccC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKAN-IVAITIDYRLAPEH---------HLPIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~d~~~~~~~---------~~~~~~~d~~~~~~~l~~~~~~ 70 (208)
+|||||+|||||..|+.... ....++.+.+ ++|++++||+++.. .....+.|+..+++|+++.+..
T Consensus 95 ~pv~v~ihGG~~~~g~~~~~----~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~ 170 (493)
T cd00312 95 LPVMVWIHGGGFMFGSGSLY----PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAA 170 (493)
T ss_pred CCEEEEEcCCccccCCCCCC----ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 59999999999999987642 1234444544 99999999976532 2234688999999999999888
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHH
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
++ .|+++|.|+|+|+||+++..++..
T Consensus 171 fg--------gd~~~v~~~G~SaG~~~~~~~~~~ 196 (493)
T cd00312 171 FG--------GDPDSVTIFGESAGGASVSLLLLS 196 (493)
T ss_pred hC--------CCcceEEEEeecHHHHHhhhHhhC
Confidence 77 899999999999999999888775
No 65
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.53 E-value=2.8e-14 Score=105.45 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=79.0
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYY 158 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~ 158 (208)
+|.+||+++|.|+||..++.++.+.+.+++..++...+. ..+.. -..++.. |++++|+.+|..+| .++-+
T Consensus 266 ID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~-d~v~l----v~~lk~~---piWvfhs~dDkv~Pv~nSrv~ 337 (387)
T COG4099 266 IDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGG-DRVYL----VRTLKKA---PIWVFHSSDDKVIPVSNSRVL 337 (387)
T ss_pred cccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCC-chhhh----hhhhccC---ceEEEEecCCCccccCcceee
Confidence 999999999999999999999999999998888865554 22211 1123332 79999999999775 56778
Q ss_pred HHHHHhcCCCcceEEEEeCC---CCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 159 YETLKKSEWHGKAEFYQTLG---EDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 159 ~~~l~~~g~~~~~~~~~~~~---~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
++.+++.+. +|++..|.. .-|+.....+++. ---...+++||-++
T Consensus 338 y~~lk~~~~--kv~Ytaf~~g~~~~eG~d~~g~w~a--tyn~~eaieWLl~Q 385 (387)
T COG4099 338 YERLKALDR--KVNYTAFLEGTTVLEGVDHSGVWWA--TYNDAEAIEWLLKQ 385 (387)
T ss_pred hHHHHhhcc--ccchhhhhhccccccccCCCCccee--ecCCHHHHHHHHhc
Confidence 888888875 777777652 2233333222111 11234677887654
No 66
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.53 E-value=4.3e-13 Score=108.51 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=44.6
Q ss_pred cCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 135 MMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 135 ~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+.. |+++++|++|.+++ ..+.+.+.+. +++++++++.||.... .++.+++.+.|.+|.+..
T Consensus 416 ~I~v-PtLII~Ge~D~ivP~~~~~~la~~iP------~a~l~vI~~aGH~~~v----~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 416 QLKC-DVAIFHGGDDELIPVECSYAVKAKVP------RARVKVIDDKDHITIV----VGRQKEFARELEEIWRRS 479 (481)
T ss_pred hCCC-CEEEEEECCCCCCCHHHHHHHHHhCC------CCEEEEeCCCCCcchh----hcCHHHHHHHHHHHhhcc
Confidence 3555 99999999999875 3344444332 5699999999996332 144578889999998753
No 67
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.53 E-value=3.7e-12 Score=96.94 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC----CchhhH-HHHHHHHHHhhccCCCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL----PIAHED-SWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~----~~~~~d-~~~~~~~l~~~~~~~~~~~ 75 (208)
.|.|||+||.+... . .| ..+...+.+.||.|+.+|++....... ...+++ +....+++.+.
T Consensus 18 ~p~vvliHG~~~~~---~--~w-~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~~i~~l-------- 83 (273)
T PLN02211 18 PPHFVLIHGISGGS---W--CW-YKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSL-------- 83 (273)
T ss_pred CCeEEEECCCCCCc---C--cH-HHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHHHHHHHHHhc--------
Confidence 37899999955332 2 24 444556666799999999997653211 122333 33344444432
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+++|+||||||.+++.++.+.
T Consensus 84 -----~~~~~v~lvGhS~GG~v~~~~a~~~ 108 (273)
T PLN02211 84 -----PENEKVILVGHSAGGLSVTQAIHRF 108 (273)
T ss_pred -----CCCCCEEEEEECchHHHHHHHHHhC
Confidence 1237899999999999999988765
No 68
>PLN02578 hydrolase
Probab=99.52 E-value=1.3e-12 Score=103.08 Aligned_cols=83 Identities=18% Similarity=0.066 Sum_probs=53.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCc---hhh-HHHHHHHHHHhhccCCCCCCcc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPI---AHE-DSWAGLEWVASHSYGQGPEPLL 77 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~---~~~-d~~~~~~~l~~~~~~~~~~~~~ 77 (208)
|.||++||.+. +.. .|...+ ..+++ +|.|+.+|+++......+. ..+ .+.++.+++.+.
T Consensus 87 ~~vvliHG~~~---~~~--~w~~~~-~~l~~-~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~~---------- 149 (354)
T PLN02578 87 LPIVLIHGFGA---SAF--HWRYNI-PELAK-KYKVYALDLLGFGWSDKALIEYDAMVWRDQVADFVKEV---------- 149 (354)
T ss_pred CeEEEECCCCC---CHH--HHHHHH-HHHhc-CCEEEEECCCCCCCCCCcccccCHHHHHHHHHHHHHHh----------
Confidence 56899999543 221 243333 34444 7999999999865433221 112 233444444442
Q ss_pred cCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 78 NRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 78 ~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..++++++|||+||.+++.++.++
T Consensus 150 ----~~~~~~lvG~S~Gg~ia~~~A~~~ 173 (354)
T PLN02578 150 ----VKEPAVLVGNSLGGFTALSTAVGY 173 (354)
T ss_pred ----ccCCeEEEEECHHHHHHHHHHHhC
Confidence 247899999999999999999877
No 69
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.51 E-value=1.7e-14 Score=119.47 Aligned_cols=95 Identities=32% Similarity=0.498 Sum_probs=72.2
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC-------CC--C-CCchhhHHHHHHHHHHhhccC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP-------EH--H-LPIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-------~~--~-~~~~~~d~~~~~~~l~~~~~~ 70 (208)
+||+|||||||+..|+.....+ .-..++++.+++||.++||++. +. . ....+.|+..|++|+++++..
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~--~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~ 202 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPY--DGASLAASKDVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAA 202 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGG--HTHHHHHHHTSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGG
T ss_pred cceEEEeecccccCCCcccccc--cccccccCCCEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhh
Confidence 5999999999999998843222 2245667779999999999752 22 2 456788999999999999998
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
++ .|+++|.|+|+|+||..+..++...
T Consensus 203 FG--------GDp~~VTl~G~SAGa~sv~~~l~sp 229 (535)
T PF00135_consen 203 FG--------GDPDNVTLFGQSAGAASVSLLLLSP 229 (535)
T ss_dssp GT--------EEEEEEEEEEETHHHHHHHHHHHGG
T ss_pred cc--------cCCcceeeeeecccccccceeeecc
Confidence 88 8999999999999999998877765
No 70
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.51 E-value=3.3e-13 Score=98.74 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=53.1
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-----chhhH-HHHHHHHHHhhccCCCCCCcc
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-----IAHED-SWAGLEWVASHSYGQGPEPLL 77 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-----~~~~d-~~~~~~~l~~~~~~~~~~~~~ 77 (208)
|||+||.+.... .|...+. .++ +||.|+++|+++......+ ...++ +....+++.+
T Consensus 1 vv~~hG~~~~~~-----~~~~~~~-~l~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~----------- 62 (228)
T PF12697_consen 1 VVFLHGFGGSSE-----SWDPLAE-ALA-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDA----------- 62 (228)
T ss_dssp EEEE-STTTTGG-----GGHHHHH-HHH-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHH-----------
T ss_pred eEEECCCCCCHH-----HHHHHHH-HHh-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhcccc-----------
Confidence 799999664431 2444444 444 6999999999986544322 22333 3333444433
Q ss_pred cCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 78 NRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 78 ~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+++|+|||+||.+++.++.++
T Consensus 63 ---~~~~~~~lvG~S~Gg~~a~~~a~~~ 87 (228)
T PF12697_consen 63 ---LGIKKVILVGHSMGGMIALRLAARY 87 (228)
T ss_dssp ---TTTSSEEEEEETHHHHHHHHHHHHS
T ss_pred ---ccccccccccccccccccccccccc
Confidence 3347899999999999999999876
No 71
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.50 E-value=3e-13 Score=98.99 Aligned_cols=142 Identities=19% Similarity=0.264 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHH------------Hhh---------h
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEM------------YAY---------M 112 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~------------~~~---------~ 112 (208)
++-.+.|++||++++. ++.++|+|+|.|.||-+|+.+|...+.. +.. .
T Consensus 3 LEyfe~Ai~~L~~~p~-----------v~~~~Igi~G~SkGaelALllAs~~~~i~avVa~~ps~~~~~~~~~~~~~~~~ 71 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPE-----------VDPDKIGIIGISKGAELALLLASRFPQISAVVAISPSSVVFQGIGFYRDSSKP 71 (213)
T ss_dssp CHHHHHHHHHHHCSTT-----------B--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES--SB--SSEEEETTE--E
T ss_pred hHHHHHHHHHHHhCCC-----------CCCCCEEEEEECHHHHHHHHHHhcCCCccEEEEeCCceeEecchhcccCCCcc
Confidence 4667899999999864 8889999999999999999999987110 000 0
Q ss_pred ccC-----------CCCCC--------CCCccCCCCCcccccCCCCcEEEEeeCCCCChh---hHHHHHHHHHhcCCCcc
Q 042897 113 CPT-----------SAGFE--------EDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN---RGVYYYETLKKSEWHGK 170 (208)
Q Consensus 113 ~~~-----------~~~~~--------~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~---~~~~~~~~l~~~g~~~~ 170 (208)
++. ..+.. .+........-.+.++.. |+|++.|++|.+.+ ..+.+.++|+++|.+-+
T Consensus 72 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~-piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~ 150 (213)
T PF08840_consen 72 LPYLPFDISKFSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKG-PILLISGEDDQIWPSSEMAEQIEERLKAAGFPHN 150 (213)
T ss_dssp E----B-GGG-EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--S-EEEEEEETT-SSS-HHHHHHHHHHHHHCTT----
T ss_pred CCcCCcChhhceecCCcceehhhhhhcccccccccccccHHHcCC-CEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCc
Confidence 000 00000 000000011112344455 99999999999875 45777888999885235
Q ss_pred eEEEEeCCCCccccccC-CCC----------------------CchHHHHHHHHHHHHhc
Q 042897 171 AEFYQTLGEDHCFHMFN-PKS----------------------KNVGPFLQKLVNFIKST 207 (208)
Q Consensus 171 ~~~~~~~~~~H~~~~~~-~~~----------------------~~~~~~~~~i~~fl~~~ 207 (208)
++.+.||++||.+.... |.. ...++.|+++++||++|
T Consensus 151 ~~~l~Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~ 210 (213)
T PF08840_consen 151 VEHLSYPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKH 210 (213)
T ss_dssp -EEEEETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999864211 111 13467899999999986
No 72
>PRK06489 hypothetical protein; Provisional
Probab=99.49 E-value=1.2e-12 Score=103.53 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=44.0
Q ss_pred cccCCCCcEEEEeeCCCCChhhH----HHHHHHHHhcCCCcceEEEEeCCC----CccccccCCCCCchHHHHHHHHHHH
Q 042897 133 LKMMRSDRVLVCVAEKDGLRNRG----VYYYETLKKSEWHGKAEFYQTLGE----DHCFHMFNPKSKNVGPFLQKLVNFI 204 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~~~----~~~~~~l~~~g~~~~~~~~~~~~~----~H~~~~~~~~~~~~~~~~~~i~~fl 204 (208)
+..+.. |+++++|++|.+++.. +.+.+.+. +.+++++|++ ||.. . ++.+++.+.|.+||
T Consensus 288 L~~I~~-PvLvI~G~~D~~~p~~~~~~~~la~~ip------~a~l~~i~~a~~~~GH~~-~-----e~P~~~~~~i~~FL 354 (360)
T PRK06489 288 LEKIKA-PVLAINSADDERNPPETGVMEAALKRVK------HGRLVLIPASPETRGHGT-T-----GSAKFWKAYLAEFL 354 (360)
T ss_pred HHhCCC-CEEEEecCCCcccChhhHHHHHHHHhCc------CCeEEEECCCCCCCCccc-c-----cCHHHHHHHHHHHH
Confidence 345555 9999999999987533 23333322 5689999986 9953 2 35578899999999
Q ss_pred Hhc
Q 042897 205 KST 207 (208)
Q Consensus 205 ~~~ 207 (208)
+++
T Consensus 355 ~~~ 357 (360)
T PRK06489 355 AQV 357 (360)
T ss_pred Hhc
Confidence 875
No 73
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.49 E-value=9.5e-13 Score=103.69 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=49.2
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCCC----chh-hHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHH
Q 042897 25 FLTSLVVKANIVAITIDYRLAPEHHLP----IAH-EDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAH 99 (208)
Q Consensus 25 ~~~~~~~~~g~~v~~~d~~~~~~~~~~----~~~-~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~ 99 (208)
.+.+.+.++||.|+++|++........ ... .|+.++++++.+. ....+++++|||+||.+++
T Consensus 85 ~~~~~L~~~G~~V~~~D~~g~g~s~~~~~~~d~~~~~~~~~v~~l~~~-------------~~~~~i~lvGhS~GG~i~~ 151 (350)
T TIGR01836 85 SLVRGLLERGQDVYLIDWGYPDRADRYLTLDDYINGYIDKCVDYICRT-------------SKLDQISLLGICQGGTFSL 151 (350)
T ss_pred hHHHHHHHCCCeEEEEeCCCCCHHHhcCCHHHHHHHHHHHHHHHHHHH-------------hCCCcccEEEECHHHHHHH
Confidence 345556778999999999875422111 222 3467788888875 3457899999999999999
Q ss_pred HHHHHH
Q 042897 100 YVAVQL 105 (208)
Q Consensus 100 ~~~~~~ 105 (208)
.++...
T Consensus 152 ~~~~~~ 157 (350)
T TIGR01836 152 CYAALY 157 (350)
T ss_pred HHHHhC
Confidence 887765
No 74
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.49 E-value=1.9e-12 Score=91.52 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=78.1
Q ss_pred CCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHH
Q 042897 80 HADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVY 157 (208)
Q Consensus 80 ~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~ 157 (208)
+++.+||++.|+|+||.+|+..+..+.....................|......+ .+|++..||+.|++++ .+++
T Consensus 89 Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~~~~~~~~~---~~~i~~~Hg~~d~~vp~~~g~~ 165 (206)
T KOG2112|consen 89 GIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGLPGWLPGVN---YTPILLCHGTADPLVPFRFGEK 165 (206)
T ss_pred CCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhccCCccccC---cchhheecccCCceeehHHHHH
Confidence 4899999999999999999999987633333322211111001111111111111 2389999999999986 5688
Q ss_pred HHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 158 YYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
..+.++..+. .++++.|++.+|... .+.++++..|+++
T Consensus 166 s~~~l~~~~~--~~~f~~y~g~~h~~~---------~~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 166 SAQFLKSLGV--RVTFKPYPGLGHSTS---------PQELDDLKSWIKT 203 (206)
T ss_pred HHHHHHHcCC--ceeeeecCCcccccc---------HHHHHHHHHHHHH
Confidence 8889999987 799999999999522 3668889999875
No 75
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=98.43 Aligned_cols=88 Identities=19% Similarity=0.264 Sum_probs=67.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-------CCchhhHHHHHHHHHHhhccCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-------LPIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-------~~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
.|.||.+|| ..|+..+. |..-+.+.+.++||.|+++++|++.... .....+|+..++++++..
T Consensus 75 ~P~vVl~HG---L~G~s~s~-y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~------ 144 (345)
T COG0429 75 KPLVVLFHG---LEGSSNSP-YARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKAR------ 144 (345)
T ss_pred CceEEEEec---cCCCCcCH-HHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHh------
Confidence 489999999 55655553 6666677788889999999999875332 234568999999999885
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..+.++..+|+|+||++-.....+.
T Consensus 145 -------~~~r~~~avG~SLGgnmLa~ylgee 169 (345)
T COG0429 145 -------FPPRPLYAVGFSLGGNMLANYLGEE 169 (345)
T ss_pred -------CCCCceEEEEecccHHHHHHHHHhh
Confidence 4568999999999996665555544
No 76
>PRK07581 hypothetical protein; Validated
Probab=99.48 E-value=2.4e-12 Score=100.96 Aligned_cols=61 Identities=10% Similarity=-0.063 Sum_probs=43.5
Q ss_pred ccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCC-CCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 134 KMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLG-EDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 134 ~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
..+.. |+++++|++|.+++ ..+.+.+.+. +++++++++ .||.... ++.+++...|.+||++
T Consensus 272 ~~I~~-PtLvI~G~~D~~~p~~~~~~l~~~ip------~a~l~~i~~~~GH~~~~-----~~~~~~~~~~~~~~~~ 335 (339)
T PRK07581 272 GSITA-KTFVMPISTDLYFPPEDCEAEAALIP------NAELRPIESIWGHLAGF-----GQNPADIAFIDAALKE 335 (339)
T ss_pred hcCCC-CEEEEEeCCCCCCCHHHHHHHHHhCC------CCeEEEeCCCCCccccc-----cCcHHHHHHHHHHHHH
Confidence 34555 99999999999875 3344433332 558889998 8995444 4447888888899886
No 77
>PLN02872 triacylglycerol lipase
Probab=99.48 E-value=6.7e-13 Score=105.36 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=58.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC----------------CCCch-hhHHHHHHHHH
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH----------------HLPIA-HEDSWAGLEWV 64 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~----------------~~~~~-~~d~~~~~~~l 64 (208)
|+|+++||.+.....-........+...++++||.|+.+|.|+.... .+... ..|+.++++++
T Consensus 75 ~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i 154 (395)
T PLN02872 75 PPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYV 154 (395)
T ss_pred CeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHH
Confidence 78999999543222110000012345667888999999999974211 11112 36899999999
Q ss_pred HhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHH
Q 042897 65 ASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~ 103 (208)
.+. ..+++.++|||+||.+++.++.
T Consensus 155 ~~~--------------~~~~v~~VGhS~Gg~~~~~~~~ 179 (395)
T PLN02872 155 YSI--------------TNSKIFIVGHSQGTIMSLAALT 179 (395)
T ss_pred Hhc--------------cCCceEEEEECHHHHHHHHHhh
Confidence 763 2368999999999999985554
No 78
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.48 E-value=3.6e-13 Score=102.09 Aligned_cols=91 Identities=21% Similarity=0.141 Sum_probs=57.9
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
+.+|++||.|-..+ .|...+..++. ...|.++|..+.+..+-|....|...+.++..+..+.|.. ..
T Consensus 91 ~plVliHGyGAg~g-----~f~~Nf~~La~--~~~vyaiDllG~G~SSRP~F~~d~~~~e~~fvesiE~WR~------~~ 157 (365)
T KOG4409|consen 91 TPLVLIHGYGAGLG-----LFFRNFDDLAK--IRNVYAIDLLGFGRSSRPKFSIDPTTAEKEFVESIEQWRK------KM 157 (365)
T ss_pred CcEEEEeccchhHH-----HHHHhhhhhhh--cCceEEecccCCCCCCCCCCCCCcccchHHHHHHHHHHHH------Hc
Confidence 56899999653332 34455556644 7999999987765444333333333333333333333210 03
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+.++++|+|||+||++|..+|.++
T Consensus 158 ~L~KmilvGHSfGGYLaa~YAlKy 181 (365)
T KOG4409|consen 158 GLEKMILVGHSFGGYLAAKYALKY 181 (365)
T ss_pred CCcceeEeeccchHHHHHHHHHhC
Confidence 457999999999999999999998
No 79
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.45 E-value=8.1e-12 Score=96.66 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=54.6
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-----chhhHHHHHHHHHHhhccCCCCCCc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-----IAHEDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-----~~~~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
|.||++||++..... .. ....+...+|.|+++|+|+......+ ...+|..+.+..+.+.
T Consensus 28 ~~lvllHG~~~~~~~------~~-~~~~~~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~dl~~l~~~--------- 91 (306)
T TIGR01249 28 KPVVFLHGGPGSGTD------PG-CRRFFDPETYRIVLFDQRGCGKSTPHACLEENTTWDLVADIEKLREK--------- 91 (306)
T ss_pred CEEEEECCCCCCCCC------HH-HHhccCccCCEEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHH---------
Confidence 468999996533211 11 22233345899999999976533221 2344555555555543
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.++++++|||+||.+++.++.++
T Consensus 92 ----l~~~~~~lvG~S~GG~ia~~~a~~~ 116 (306)
T TIGR01249 92 ----LGIKNWLVFGGSWGSTLALAYAQTH 116 (306)
T ss_pred ----cCCCCEEEEEECHHHHHHHHHHHHC
Confidence 3456899999999999999998766
No 80
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.44 E-value=2.4e-12 Score=101.49 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=46.4
Q ss_pred cccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEE-eCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 133 LKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQ-TLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~-~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
++.+.. |+++++|++|.+++ ..+.+.+.+..... .++++. +++.||...+ ++.+++.+.|.+||+
T Consensus 284 l~~I~~-P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~--~v~~~~i~~~~GH~~~l-----e~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 284 LSRIKA-PFLVVSITSDWLFPPAESRELAKALPAAGL--RVTYVEIESPYGHDAFL-----VETDQVEELIRGFLR 351 (351)
T ss_pred HhhCCC-CEEEEEeCCccccCHHHHHHHHHHHhhcCC--ceEEEEeCCCCCcchhh-----cCHHHHHHHHHHHhC
Confidence 345555 99999999999764 56778887876532 344444 4689996444 455888999999985
No 81
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.44 E-value=2e-12 Score=99.94 Aligned_cols=175 Identities=18% Similarity=0.158 Sum_probs=98.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC------------------CC---------ch
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH------------------LP---------IA 53 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~------------------~~---------~~ 53 (208)
+|+||.+||.|...+. +.. ... .+..|+.|+.+|-|+.++.. .. ..
T Consensus 83 ~Pavv~~hGyg~~~~~-----~~~-~~~-~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~ 155 (320)
T PF05448_consen 83 LPAVVQFHGYGGRSGD-----PFD-LLP-WAAAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRV 155 (320)
T ss_dssp EEEEEEE--TT--GGG-----HHH-HHH-HHHTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHH
T ss_pred cCEEEEecCCCCCCCC-----ccc-ccc-cccCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHH
Confidence 4899999997754322 122 223 46679999999988543100 00 12
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCC---------------CC
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTS---------------AG 118 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~---------------~~ 118 (208)
..|+..++++|.+.+. +|.++|++.|.|+||.+++.++.-.+. +....+.. .+
T Consensus 156 ~~D~~ravd~l~slpe-----------vD~~rI~v~G~SqGG~lal~~aaLd~r-v~~~~~~vP~l~d~~~~~~~~~~~~ 223 (320)
T PF05448_consen 156 YLDAVRAVDFLRSLPE-----------VDGKRIGVTGGSQGGGLALAAAALDPR-VKAAAADVPFLCDFRRALELRADEG 223 (320)
T ss_dssp HHHHHHHHHHHHTSTT-----------EEEEEEEEEEETHHHHHHHHHHHHSST--SEEEEESESSSSHHHHHHHT--ST
T ss_pred HHHHHHHHHHHHhCCC-----------cCcceEEEEeecCchHHHHHHHHhCcc-ccEEEecCCCccchhhhhhcCCccc
Confidence 4689999999998764 899999999999999999988875511 11111000 00
Q ss_pred C-C---------------CCCccC---CCC-CcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCC
Q 042897 119 F-E---------------EDPILN---PAL-DPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLG 178 (208)
Q Consensus 119 ~-~---------------~~~~~~---~~~-~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 178 (208)
. . .+...+ -.. ..-...+.. |+++..|-.|+.++..-.++..-.=.+ ++++..||.
T Consensus 224 ~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~-pvl~~~gl~D~~cPP~t~fA~yN~i~~---~K~l~vyp~ 299 (320)
T PF05448_consen 224 PYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKC-PVLFSVGLQDPVCPPSTQFAAYNAIPG---PKELVVYPE 299 (320)
T ss_dssp TTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--S-EEEEEEETT-SSS-HHHHHHHHCC--S---SEEEEEETT
T ss_pred cHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCC-CEEEEEecCCCCCCchhHHHHHhccCC---CeeEEeccC
Confidence 0 0 000000 001 112244555 999999999999975544443322222 789999999
Q ss_pred CCccccccCCCCCchHHH-HHHHHHHHHhc
Q 042897 179 EDHCFHMFNPKSKNVGPF-LQKLVNFIKST 207 (208)
Q Consensus 179 ~~H~~~~~~~~~~~~~~~-~~~i~~fl~~~ 207 (208)
.+|... .+. .++..+||++|
T Consensus 300 ~~He~~---------~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 300 YGHEYG---------PEFQEDKQLNFLKEH 320 (320)
T ss_dssp --SSTT---------HHHHHHHHHHHHHH-
T ss_pred cCCCch---------hhHHHHHHHHHHhcC
Confidence 999533 344 78899999986
No 82
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.44 E-value=4.5e-12 Score=100.85 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=50.7
Q ss_pred cccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeC-CCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 133 LKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTL-GEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~-~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+..+.. |+++++|++|.+++ ..+.+.+.+...+. ++++.+++ +.||...+ ++.+++.+.|.+||++.
T Consensus 305 l~~I~~-PtLvI~G~~D~~~p~~~~~~la~~i~~a~~--~~~l~~i~~~~GH~~~l-----e~p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 305 LARIKA-RFLVVSFTSDWLFPPARSREIVDALLAAGA--DVSYAEIDSPYGHDAFL-----LDDPRYGRLVRAFLERA 374 (379)
T ss_pred HhcCCC-CEEEEEECCccccCHHHHHHHHHHHHhcCC--CeEEEEeCCCCCchhHh-----cCHHHHHHHHHHHHHhh
Confidence 345666 99999999999764 56777888877643 66888775 89996444 45578899999999864
No 83
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.43 E-value=2.2e-11 Score=91.76 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=62.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-------CCchhhHHHHHHHHHHhhccCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-------LPIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-------~~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
+|+||++||.+....... .. .....+.+++.||.|+.+||++..+.. +....+|+.++++++++.
T Consensus 25 ~~~VlllHG~g~~~~~~~-~~-~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~------ 96 (266)
T TIGR03101 25 RGVVIYLPPFAEEMNKSR-RM-VALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQ------ 96 (266)
T ss_pred ceEEEEECCCcccccchh-HH-HHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhc------
Confidence 378999999553222111 11 233455567789999999999865331 223457888899998763
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...+++|+||||||.+++.++.+.
T Consensus 97 --------~~~~v~LvG~SmGG~vAl~~A~~~ 120 (266)
T TIGR03101 97 --------GHPPVTLWGLRLGALLALDAANPL 120 (266)
T ss_pred --------CCCCEEEEEECHHHHHHHHHHHhC
Confidence 246899999999999999888765
No 84
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.41 E-value=8e-12 Score=96.98 Aligned_cols=59 Identities=27% Similarity=0.271 Sum_probs=44.8
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
|+++++|+.|++++.. ....+++.-- ++++++++++||. +..+..+.+...|..|+.++
T Consensus 266 pvlii~G~~D~~~p~~--~~~~~~~~~p--n~~~~~I~~~gH~-----~h~e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 266 PVLIIWGDKDQIVPLE--LAEELKKKLP--NAELVEIPGAGHL-----PHLERPEEVAALLRSFIARL 324 (326)
T ss_pred ceEEEEcCcCCccCHH--HHHHHHhhCC--CceEEEeCCCCcc-----cccCCHHHHHHHHHHHHHHh
Confidence 9999999999998632 2233333222 7899999999995 44566789999999999875
No 85
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.41 E-value=1.2e-11 Score=93.35 Aligned_cols=81 Identities=23% Similarity=0.229 Sum_probs=56.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCch---------hhHHHHHHHHHHhhccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIA---------HEDSWAGLEWVASHSYGQG 72 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~---------~~d~~~~~~~l~~~~~~~~ 72 (208)
|+|+++||-. .+- ..| ......++.+||.|+++|.|+.....-|.. ..|+...++.|
T Consensus 45 P~illlHGfP---e~w--ysw-r~q~~~la~~~~rviA~DlrGyG~Sd~P~~~~~Yt~~~l~~di~~lld~L-------- 110 (322)
T KOG4178|consen 45 PIVLLLHGFP---ESW--YSW-RHQIPGLASRGYRVIAPDLRGYGFSDAPPHISEYTIDELVGDIVALLDHL-------- 110 (322)
T ss_pred CEEEEEccCC---ccc--hhh-hhhhhhhhhcceEEEecCCCCCCCCCCCCCcceeeHHHHHHHHHHHHHHh--------
Confidence 8999999932 111 123 333556677799999999998765544433 23444444333
Q ss_pred CCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 73 PEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 73 ~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..++++++||++|+.+|..++..+
T Consensus 111 ---------g~~k~~lvgHDwGaivaw~la~~~ 134 (322)
T KOG4178|consen 111 ---------GLKKAFLVGHDWGAIVAWRLALFY 134 (322)
T ss_pred ---------ccceeEEEeccchhHHHHHHHHhC
Confidence 248999999999999999999987
No 86
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.41 E-value=1.4e-12 Score=95.10 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=64.9
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC--CCC---C-------CchhhHHHHHHHHHHhhc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP--EHH---L-------PIAHEDSWAGLEWVASHS 68 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--~~~---~-------~~~~~d~~~~~~~l~~~~ 68 (208)
+|+||++||++...... ....-+..++.+.||.|+.|+-.... ... + ......+.+.++++....
T Consensus 16 ~PLVv~LHG~~~~a~~~---~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~i~~lv~~v~~~~ 92 (220)
T PF10503_consen 16 VPLVVVLHGCGQSAEDF---AAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAFIAALVDYVAARY 92 (220)
T ss_pred CCEEEEeCCCCCCHHHH---HhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccchhhHHHHHHhHhhhc
Confidence 49999999976443211 11223457888899999999854211 111 1 112233455566665543
Q ss_pred cCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhh
Q 042897 69 YGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYM 112 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~ 112 (208)
.+|++||++.|+|.||.++..+++.+...+...
T Consensus 93 -----------~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~ 125 (220)
T PF10503_consen 93 -----------NIDPSRVYVTGLSNGGMMANVLACAYPDLFAAV 125 (220)
T ss_pred -----------ccCCCceeeEEECHHHHHHHHHHHhCCccceEE
Confidence 399999999999999999999999886665544
No 87
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.41 E-value=3.4e-13 Score=94.59 Aligned_cols=175 Identities=22% Similarity=0.216 Sum_probs=114.8
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC-----CCCCC--chhhHHHHHHHHHHhhccCCCCCCc
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP-----EHHLP--IAHEDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-----~~~~~--~~~~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
|+.+.| ..|+... .|...+.++....-++++..|-++.. +..++ -..+|++.+++.+..
T Consensus 45 iLlipG---alGs~~t-Df~pql~~l~k~l~~TivawDPpGYG~SrPP~Rkf~~~ff~~Da~~avdLM~a---------- 110 (277)
T KOG2984|consen 45 ILLIPG---ALGSYKT-DFPPQLLSLFKPLQVTIVAWDPPGYGTSRPPERKFEVQFFMKDAEYAVDLMEA---------- 110 (277)
T ss_pred eEeccc---ccccccc-cCCHHHHhcCCCCceEEEEECCCCCCCCCCCcccchHHHHHHhHHHHHHHHHH----------
Confidence 566776 3444433 35677788877777999999977653 33443 346899999998876
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCC-------------CCC---------CCCCcc---CC----
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTS-------------AGF---------EEDPIL---NP---- 127 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~-------------~~~---------~~~~~~---~~---- 127 (208)
.+..++.|+|+|-||..|+.+|.++.+....++--. .+. ...|+. .+
T Consensus 111 ----Lk~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~ 186 (277)
T KOG2984|consen 111 ----LKLEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFR 186 (277)
T ss_pred ----hCCCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHH
Confidence 567899999999999999999988722211110000 000 000000 00
Q ss_pred --------------------CCCcccccCCCCcEEEEeeCCCCChh-hHHHHHHHHHhcCCCcceEEEEeCCCCcccccc
Q 042897 128 --------------------ALDPNLKMMRSDRVLVCVAEKDGLRN-RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMF 186 (208)
Q Consensus 128 --------------------~~~~~~~~~~~~p~li~~G~~D~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~ 186 (208)
.-...+..+.. |+||+||+.|+++. ...-+...++. -.+++++|.+.|.|..-
T Consensus 187 ~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkc-Ptli~hG~kDp~~~~~hv~fi~~~~~-----~a~~~~~peGkHn~hLr 260 (277)
T KOG2984|consen 187 TQWAAWVDVVDQFHSFCDGRFCRLVLPQVKC-PTLIMHGGKDPFCGDPHVCFIPVLKS-----LAKVEIHPEGKHNFHLR 260 (277)
T ss_pred HHHHHHHHHHHHHhhcCCCchHhhhcccccC-CeeEeeCCcCCCCCCCCccchhhhcc-----cceEEEccCCCcceeee
Confidence 00123445555 99999999999884 44555555543 35899999999988875
Q ss_pred CCCCCchHHHHHHHHHHHHhc
Q 042897 187 NPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 187 ~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+ +++...+.+|++++
T Consensus 261 ya-----~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 261 YA-----KEFNKLVLDFLKST 276 (277)
T ss_pred ch-----HHHHHHHHHHHhcc
Confidence 54 67888899999875
No 88
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.41 E-value=8.4e-12 Score=114.33 Aligned_cols=180 Identities=22% Similarity=0.252 Sum_probs=105.3
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-----------chhhHHHHHHHHHHhhccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-----------IAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-----------~~~~d~~~~~~~l~~~~~~ 70 (208)
|+|||+||.+.... .|...+..+ .+ +|.|+.+|+++....... ..+++..+.+..+.+.
T Consensus 1372 ~~vVllHG~~~s~~-----~w~~~~~~L-~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--- 1441 (1655)
T PLN02980 1372 SVVLFLHGFLGTGE-----DWIPIMKAI-SG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--- 1441 (1655)
T ss_pred CeEEEECCCCCCHH-----HHHHHHHHH-hC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH---
Confidence 68999999654322 244444444 43 699999999976543221 1233333333323232
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhc-------------------------------------
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMC------------------------------------- 113 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~------------------------------------- 113 (208)
...+++.|+||||||.+|+.++.+++......+
T Consensus 1442 ----------l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 1511 (1655)
T PLN02980 1442 ----------ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFL 1511 (1655)
T ss_pred ----------hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHH
Confidence 345789999999999999999987611111000
Q ss_pred ----cCC--CCCCCCC--------cc-------------------CCCCCcccccCCCCcEEEEeeCCCCChh-hHHHHH
Q 042897 114 ----PTS--AGFEEDP--------IL-------------------NPALDPNLKMMRSDRVLVCVAEKDGLRN-RGVYYY 159 (208)
Q Consensus 114 ----~~~--~~~~~~~--------~~-------------------~~~~~~~~~~~~~~p~li~~G~~D~~~~-~~~~~~ 159 (208)
... ......+ .. .+.....+..+.. |+++++|++|..++ ..+++.
T Consensus 1512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~-PtLlI~Ge~D~~~~~~a~~~~ 1590 (1655)
T PLN02980 1512 ENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDT-PLLLVVGEKDVKFKQIAQKMY 1590 (1655)
T ss_pred HHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCC-CEEEEEECCCCccHHHHHHHH
Confidence 000 0000000 00 0001123455555 99999999999764 345555
Q ss_pred HHHHhcC------CCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 160 ETLKKSE------WHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 160 ~~l~~~g------~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+.+.+.. .+..++++++|++||.... +..+++.+.|.+||++.
T Consensus 1591 ~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~l-----E~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1591 REIGKSKESGNDKGKEIIEIVEIPNCGHAVHL-----ENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred HHccccccccccccccceEEEEECCCCCchHH-----HCHHHHHHHHHHHHHhc
Confidence 5554320 0013689999999996444 45578999999999864
No 89
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.40 E-value=2.4e-11 Score=96.36 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=53.4
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-------chhhHHHHHHHHHHhhccCCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-------IAHEDSWAGLEWVASHSYGQGPE 74 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-------~~~~d~~~~~~~l~~~~~~~~~~ 74 (208)
|+||++||.+... ..|...+ ..+++ +|.|+++|+++......+ ..+++..+.+..+.+.
T Consensus 128 ~~ivllHG~~~~~-----~~w~~~~-~~L~~-~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~------- 193 (383)
T PLN03084 128 PPVLLIHGFPSQA-----YSYRKVL-PVLSK-NYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDE------- 193 (383)
T ss_pred CeEEEECCCCCCH-----HHHHHHH-HHHhc-CCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHH-------
Confidence 7899999955322 1244443 44454 899999999976533221 2333333333222222
Q ss_pred CcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 75 PLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 75 ~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...+++.|+|||+||.+++.++.++
T Consensus 194 ------l~~~~~~LvG~s~GG~ia~~~a~~~ 218 (383)
T PLN03084 194 ------LKSDKVSLVVQGYFSPPVVKYASAH 218 (383)
T ss_pred ------hCCCCceEEEECHHHHHHHHHHHhC
Confidence 3346899999999999999998875
No 90
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.36 E-value=1.5e-11 Score=96.62 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=45.8
Q ss_pred cccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCC-CCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 133 LKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLG-EDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+..+.. |+++++|+.|.+++ ..+++.+.+.. +.+++++++ +||.... ++.+++.+.|.+||++.
T Consensus 273 l~~I~~-PtLvi~G~~D~~~p~~~~~~~~~~i~p-----~a~l~~i~~~aGH~~~l-----E~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 273 PEAIRV-PTVVVAVEGDRLVPLADLVELAEGLGP-----RGSLRVLRSPYGHDAFL-----KETDRIDAILTTALRST 339 (343)
T ss_pred hhcCCC-CeEEEEeCCCEeeCHHHHHHHHHHcCC-----CCeEEEEeCCccHHHHh-----cCHHHHHHHHHHHHHhc
Confidence 345555 99999999999875 34444444421 458888985 8996554 45588999999999864
No 91
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.35 E-value=1.1e-11 Score=87.89 Aligned_cols=157 Identities=15% Similarity=0.221 Sum_probs=103.5
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-------CCCchhhHHHHHHHHHHhhccCCCCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-------HLPIAHEDSWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-------~~~~~~~d~~~~~~~l~~~~~~~~~~~ 75 (208)
++|++|| .+.+++. .+...++..+.+.|+.++.+|+++..+. .+....+|+..+++++...
T Consensus 35 ~vvlcHG---frS~Kn~-~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~-------- 102 (269)
T KOG4667|consen 35 IVVLCHG---FRSHKNA-IIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNS-------- 102 (269)
T ss_pred EEEEeec---cccccch-HHHHHHHHHHHhcCceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhccC--------
Confidence 6899999 4444443 3455567777888999999999986533 3446679999999998773
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHHHH---------------HH---------hhhccCCCCCC-CCC-------
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQLDE---------------MY---------AYMCPTSAGFE-EDP------- 123 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~---------------~~---------~~~~~~~~~~~-~~~------- 123 (208)
+..--+|+|||-||.+++..+.+... .. .... ..++. ..+
T Consensus 103 ------nr~v~vi~gHSkGg~Vvl~ya~K~~d~~~viNcsGRydl~~~I~eRlg~~~l~~ik--e~Gfid~~~rkG~y~~ 174 (269)
T KOG4667|consen 103 ------NRVVPVILGHSKGGDVVLLYASKYHDIRNVINCSGRYDLKNGINERLGEDYLERIK--EQGFIDVGPRKGKYGY 174 (269)
T ss_pred ------ceEEEEEEeecCccHHHHHHHHhhcCchheEEcccccchhcchhhhhcccHHHHHH--hCCceecCcccCCcCc
Confidence 22334799999999999999988711 00 0000 01110 000
Q ss_pred ---------ccCCCCCcccccC--CCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCcccccc
Q 042897 124 ---------ILNPALDPNLKMM--RSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMF 186 (208)
Q Consensus 124 ---------~~~~~~~~~~~~~--~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~ 186 (208)
.++....+....+ .. |+|-+||.+|.++| .+.+|++.++.+ +++.+||+.|.|+..
T Consensus 175 rvt~eSlmdrLntd~h~aclkId~~C-~VLTvhGs~D~IVPve~AkefAk~i~nH------~L~iIEgADHnyt~~ 243 (269)
T KOG4667|consen 175 RVTEESLMDRLNTDIHEACLKIDKQC-RVLTVHGSEDEIVPVEDAKEFAKIIPNH------KLEIIEGADHNYTGH 243 (269)
T ss_pred eecHHHHHHHHhchhhhhhcCcCccC-ceEEEeccCCceeechhHHHHHHhccCC------ceEEecCCCcCccch
Confidence 1111111112223 23 99999999999886 677787777654 888999999998763
No 92
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.35 E-value=1.4e-10 Score=82.84 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=88.2
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCc--EEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANI--VAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
|||+||-. .+..+. =...+++.+++.+. .+..|+.... .+++.+.++.+.+. .
T Consensus 2 ilYlHGF~---Ssp~S~-Ka~~l~~~~~~~~~~~~~~~p~l~~~--------p~~a~~~l~~~i~~-------------~ 56 (187)
T PF05728_consen 2 ILYLHGFN---SSPQSF-KAQALKQYFAEHGPDIQYPCPDLPPF--------PEEAIAQLEQLIEE-------------L 56 (187)
T ss_pred eEEecCCC---CCCCCH-HHHHHHHHHHHhCCCceEECCCCCcC--------HHHHHHHHHHHHHh-------------C
Confidence 79999933 233321 13445666676664 4555554422 23333333333332 3
Q ss_pred CCCceEEeecChhHHHHHHHHHHH-------------HHHHhhhccCCCCC--CCCCccCCCC-----Cccc--ccCCCC
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL-------------DEMYAYMCPTSAGF--EEDPILNPAL-----DPNL--KMMRSD 139 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~--~~~~~~ 139 (208)
..+.+.|+|.|+||+.|..++.+. ...+...++...-. ...-...+.. .-.. ..-+.
T Consensus 57 ~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~- 135 (187)
T PF05728_consen 57 KPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPE- 135 (187)
T ss_pred CCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCc-
Confidence 345699999999999999999877 22222222221000 0001111100 0011 11122
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFI 204 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl 204 (208)
++++++++.|++.|..+. .+..+. +...+.+|++|.|..+ ++.+..|++|+
T Consensus 136 ~~lvll~~~DEvLd~~~a-~~~~~~------~~~~i~~ggdH~f~~f-------~~~l~~i~~f~ 186 (187)
T PF05728_consen 136 RYLVLLQTGDEVLDYREA-VAKYRG------CAQIIEEGGDHSFQDF-------EEYLPQIIAFL 186 (187)
T ss_pred cEEEEEecCCcccCHHHH-HHHhcC------ceEEEEeCCCCCCccH-------HHHHHHHHHhh
Confidence 899999999999986333 333332 2334457889998865 57788888886
No 93
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.35 E-value=5.1e-12 Score=92.95 Aligned_cols=85 Identities=26% Similarity=0.296 Sum_probs=65.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC--------CchhhHHHHHHHHHHhhccCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL--------PIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~--------~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
|++++.||||+..- +|..+..++....-..++++|.|+..+... ++...|+.+.++.+-.
T Consensus 75 pil~l~HG~G~S~L-----SfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fg------- 142 (343)
T KOG2564|consen 75 PILLLLHGGGSSAL-----SFAIFASELKSKIRCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFG------- 142 (343)
T ss_pred cEEEEeecCcccch-----hHHHHHHHHHhhcceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhc-------
Confidence 79999999886543 356666777777788899999998776544 3456788877777653
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-.+.+|+|+||||||.+|...+...
T Consensus 143 -------e~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 143 -------ELPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred -------cCCCceEEEeccccchhhhhhhhhh
Confidence 2346799999999999998877766
No 94
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.33 E-value=7.4e-11 Score=87.41 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=99.2
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
+|+|||+||.. ...+ .| ..+.+.+++.||+|+.+|+.......-...++++.+.++|+.+.....-. ....
T Consensus 17 yPVv~f~~G~~-~~~s----~Y-s~ll~hvAShGyIVV~~d~~~~~~~~~~~~~~~~~~vi~Wl~~~L~~~l~---~~v~ 87 (259)
T PF12740_consen 17 YPVVLFLHGFL-LINS----WY-SQLLEHVASHGYIVVAPDLYSIGGPDDTDEVASAAEVIDWLAKGLESKLP---LGVK 87 (259)
T ss_pred cCEEEEeCCcC-CCHH----HH-HHHHHHHHhCceEEEEecccccCCCCcchhHHHHHHHHHHHHhcchhhcc---cccc
Confidence 59999999944 2221 23 44455557779999999965444444556778889999998774433210 1123
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHH-----HHHhhhccC--CCCCCCCCccCCC---CCcccccCCCCcEEEEeeCCCC
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLD-----EMYAYMCPT--SAGFEEDPILNPA---LDPNLKMMRSDRVLVCVAEKDG 150 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~p~li~~G~~D~ 150 (208)
.|.++++|+|||.||.+|..++.... ..++..+.. ..+........|. ....--+... |++++-.+...
T Consensus 88 ~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~~P~v~~~~p~s~~~~~-P~lviGtGLg~ 166 (259)
T PF12740_consen 88 PDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQTEPPVLTYTPQSFDFSM-PALVIGTGLGG 166 (259)
T ss_pred ccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCCCCccccCcccccCCCC-CeEEEecccCc
Confidence 58899999999999999999888761 123222221 0111011111121 1111122233 89888777764
Q ss_pred C--------h-h---hHHHHHHHHHhcCCCcceEEEEeCCCCcc
Q 042897 151 L--------R-N---RGVYYYETLKKSEWHGKAEFYQTLGEDHC 182 (208)
Q Consensus 151 ~--------~-~---~~~~~~~~l~~~g~~~~~~~~~~~~~~H~ 182 (208)
. + + ..++|+++++. +.-.....+.||.
T Consensus 167 ~~~~~~~~~CaP~g~n~~~Ff~~~~~-----p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 167 EPRNPLFPPCAPAGVNYREFFDECKP-----PSWHFVAKDYGHM 205 (259)
T ss_pred ccccccCCCCCCCCCCHHHHHHhcCC-----CEEEEEeCCCCch
Confidence 1 2 2 34778777754 3444556889995
No 95
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=79.20 Aligned_cols=179 Identities=12% Similarity=0.181 Sum_probs=104.8
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC---------CCCCCchhhHHHHHHHHHHhhccCCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP---------EHHLPIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~---------~~~~~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
+||+-||.|....|. ....+...++.+|+.|+.+++.+.. .....+.......++..|...
T Consensus 16 tilLaHGAGasmdSt----~m~~~a~~la~~G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~------ 85 (213)
T COG3571 16 TILLAHGAGASMDST----SMTAVAAALARRGWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAG------ 85 (213)
T ss_pred EEEEecCCCCCCCCH----HHHHHHHHHHhCceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhc------
Confidence 688999966443332 3455677778889999999975431 111122233344455555554
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC--CCCcccccCCCCcEEEEeeCCCCC
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNP--ALDPNLKMMRSDRVLVCVAEKDGL 151 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~li~~G~~D~~ 151 (208)
.+-.+.++.|+||||-++..++......+.... ..+....+--.| .....+..+.. |++|++|++|++
T Consensus 86 -------l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~--clgYPfhppGKPe~~Rt~HL~gl~t-Ptli~qGtrD~f 155 (213)
T COG3571 86 -------LAEGPLIIGGKSMGGRVASMVADELQAPIDGLV--CLGYPFHPPGKPEQLRTEHLTGLKT-PTLITQGTRDEF 155 (213)
T ss_pred -------ccCCceeeccccccchHHHHHHHhhcCCcceEE--EecCccCCCCCcccchhhhccCCCC-CeEEeecccccc
Confidence 445689999999999999988855421111111 111112222223 12345677776 999999999997
Q ss_pred hhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCC-----CCCchHHHHHHHHHHHHh
Q 042897 152 RNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNP-----KSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 152 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~-----~~~~~~~~~~~i~~fl~~ 206 (208)
-...+ .....-+. +.+++.++++.|..-...- .....+...+.+..|..+
T Consensus 156 Gtr~~-Va~y~ls~----~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 156 GTRDE-VAGYALSD----PIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred cCHHH-HHhhhcCC----ceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 54222 23333344 7899999999996532110 111223344556666653
No 96
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.31 E-value=2e-11 Score=96.56 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC--------CC-----C-------------CCc--
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP--------EH-----H-------------LPI-- 52 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~--------~~-----~-------------~~~-- 52 (208)
+|+|||-||-|. ++.. | ..+...++++||.|+++++|-.. +. . +..
T Consensus 100 ~PvvIFSHGlgg---~R~~--y-S~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T PF03403_consen 100 FPVVIFSHGLGG---SRTS--Y-SAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFD 173 (379)
T ss_dssp EEEEEEE--TT-----TTT--T-HHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----
T ss_pred CCEEEEeCCCCc---chhh--H-HHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceecccccc
Confidence 599999999443 3332 2 33444456669999999998421 00 0 000
Q ss_pred --------------hhhHHHHHHHHHHhhccCCCC---------CCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHH
Q 042897 53 --------------AHEDSWAGLEWVASHSYGQGP---------EPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMY 109 (208)
Q Consensus 53 --------------~~~d~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~ 109 (208)
-..|+..+++.|.+....... -.-++..+|.++|+++|||.||..+++++.+... +
T Consensus 174 ~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r-~ 252 (379)
T PF03403_consen 174 PEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTR-F 252 (379)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccC-c
Confidence 123566677777542211000 0123456788999999999999999988876422 2
Q ss_pred hhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChh-hHHHHHHHHHhcCCCcceEEEEeCCCCccc
Q 042897 110 AYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN-RGVYYYETLKKSEWHGKAEFYQTLGEDHCF 183 (208)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~-~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~ 183 (208)
...+ ..|++..|........++. |+|+++.+. -... ....+.+.. ... ....++.+.|..|..
T Consensus 253 ~~~I------~LD~W~~Pl~~~~~~~i~~-P~L~InSe~-f~~~~~~~~~~~~~-~~~--~~~~~~ti~gt~H~s 316 (379)
T PF03403_consen 253 KAGI------LLDPWMFPLGDEIYSKIPQ-PLLFINSES-FQWWENIFRMKKVI-SNN--KESRMLTIKGTAHLS 316 (379)
T ss_dssp -EEE------EES---TTS-GGGGGG--S--EEEEEETT-T--HHHHHHHHTT---TT--S-EEEEEETT--GGG
T ss_pred ceEE------EeCCcccCCCcccccCCCC-CEEEEECcc-cCChhhHHHHHHHh-ccC--CCcEEEEECCCcCCC
Confidence 2221 1556666644444466666 999997774 3222 223333322 232 267889999999964
No 97
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.30 E-value=7.4e-11 Score=94.29 Aligned_cols=167 Identities=20% Similarity=0.143 Sum_probs=100.2
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCC----cEEEEecCCCCC--CCCCCc---hhhHH-HHHHHHHHhhccC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKAN----IVAITIDYRLAP--EHHLPI---AHEDS-WAGLEWVASHSYG 70 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g----~~v~~~d~~~~~--~~~~~~---~~~d~-~~~~~~l~~~~~~ 70 (208)
+|+|+++||..|..... ....+..+.++ | ++++.+|..... ...++. ..+.+ .+.+-++.+...
T Consensus 209 ~PvlyllDG~~w~~~~~----~~~~ld~li~~-g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y~- 282 (411)
T PRK10439 209 RPLAILLDGQFWAESMP----VWPALDSLTHR-GQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAIAP- 282 (411)
T ss_pred CCEEEEEECHHhhhcCC----HHHHHHHHHHc-CCCCceEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHhCC-
Confidence 59999999988764321 23334444443 5 456777742111 111111 11111 223344443311
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC--CC-CCccc-----ccCCCCcEE
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILN--PA-LDPNL-----KMMRSDRVL 142 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~-----~~~~~~p~l 142 (208)
. ..++++.+|+|+||||..|+.++.++...+..++............. +. ....+ ...+. .++
T Consensus 283 ~--------~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~~~~~~~~l~~~l~~~~~~~~~l-r~~ 353 (411)
T PRK10439 283 F--------SDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHRGGQQEGVLLEQLKAGEVSARGL-RIV 353 (411)
T ss_pred C--------CCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCccCCchhHHHHHHHhcccCCCCc-eEE
Confidence 1 25778999999999999999999998877777665443321111000 00 00011 11122 689
Q ss_pred EEeeCCCC-ChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccc
Q 042897 143 VCVAEKDG-LRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHM 185 (208)
Q Consensus 143 i~~G~~D~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~ 185 (208)
+.+|+.|. +.+..+.+.+.|+++|. ++++.+++| ||.+.+
T Consensus 354 i~~G~~E~~~~~~~~~l~~~L~~~G~--~~~~~~~~G-GHd~~~ 394 (411)
T PRK10439 354 LEAGRREPMIMRANQALYAQLHPAGH--SVFWRQVDG-GHDALC 394 (411)
T ss_pred EeCCCCCchHHHHHHHHHHHHHHCCC--cEEEEECCC-CcCHHH
Confidence 99999885 56788999999999998 999999997 797655
No 98
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.29 E-value=1.2e-10 Score=88.03 Aligned_cols=86 Identities=23% Similarity=0.259 Sum_probs=61.3
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC------CCCchhhHHHHHHHHHHhhccCCCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH------HLPIAHEDSWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~------~~~~~~~d~~~~~~~l~~~~~~~~~~~ 75 (208)
|.++++|| ..|+..+ |...-..+....+..|+.+|-|..... .+....+|+...++.....
T Consensus 53 Pp~i~lHG---l~GS~~N--w~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~~~h~~~~ma~dv~~Fi~~v~~~-------- 119 (315)
T KOG2382|consen 53 PPAIILHG---LLGSKEN--WRSVAKNLSRKLGRDVYAVDVRNHGSSPKITVHNYEAMAEDVKLFIDGVGGS-------- 119 (315)
T ss_pred CceEEecc---cccCCCC--HHHHHHHhcccccCceEEEecccCCCCccccccCHHHHHHHHHHHHHHcccc--------
Confidence 88999999 7777765 677777888888999999999865433 3445567777777776543
Q ss_pred cccCCCCCCceEEeecChhH-HHHHHHHHHH
Q 042897 76 LLNRHADFGRVFLAGESAGA-NIAHYVAVQL 105 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG-~~a~~~~~~~ 105 (208)
....++.|+|||||| -+++..+.+.
T Consensus 120 -----~~~~~~~l~GHsmGG~~~~m~~t~~~ 145 (315)
T KOG2382|consen 120 -----TRLDPVVLLGHSMGGVKVAMAETLKK 145 (315)
T ss_pred -----cccCCceecccCcchHHHHHHHHHhc
Confidence 234789999999999 4444333333
No 99
>PRK05855 short chain dehydrogenase; Validated
Probab=99.27 E-value=1e-10 Score=97.92 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=38.5
Q ss_pred CCCCcEEEEeeCCCCChhh--HHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 136 MRSDRVLVCVAEKDGLRNR--GVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 136 ~~~~p~li~~G~~D~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
+.. |+++++|++|.+++. .+.+.+.+. ..+++.++ +||.... +..+.+.+.|.+|+.+
T Consensus 232 ~~~-P~lii~G~~D~~v~~~~~~~~~~~~~------~~~~~~~~-~gH~~~~-----e~p~~~~~~i~~fl~~ 291 (582)
T PRK05855 232 TDV-PVQLIVPTGDPYVRPALYDDLSRWVP------RLWRREIK-AGHWLPM-----SHPQVLAAAVAEFVDA 291 (582)
T ss_pred ccC-ceEEEEeCCCcccCHHHhccccccCC------cceEEEcc-CCCcchh-----hChhHHHHHHHHHHHh
Confidence 444 999999999998863 233322221 45677776 5896544 3346788889899875
No 100
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.25 E-value=6.8e-12 Score=96.91 Aligned_cols=164 Identities=19% Similarity=0.093 Sum_probs=84.1
Q ss_pred CCEEEEEcCCcccc----CCCC--------CchhHHHHHHHHHhCCcEEEEecCCCCCCC----------CCC-c-----
Q 042897 1 LPLLIHYHGGGFCL----GSAL--------DMPFKRFLTSLVVKANIVAITIDYRLAPEH----------HLP-I----- 52 (208)
Q Consensus 1 ~P~vi~~HGg~~~~----~~~~--------~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~----------~~~-~----- 52 (208)
.|+||.+||-|... +... .......+...++++||.|+++|-....+. ... .
T Consensus 115 ~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~ 194 (390)
T PF12715_consen 115 FPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDALGFGERGDMEGAAQGSNYDCQALARN 194 (390)
T ss_dssp EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHH
T ss_pred CCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccccccccccccccccccchhHHHHHHH
Confidence 48999999943211 1100 111123346667888999999997643211 011 0
Q ss_pred -----------hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCC--
Q 042897 53 -----------AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGF-- 119 (208)
Q Consensus 53 -----------~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~-- 119 (208)
..-|...+++||.+.+. +|++||+++|+||||+.++.+++-.+......+......
T Consensus 195 ~l~lG~S~~G~~~~ddmr~lDfL~slpe-----------VD~~RIG~~GfSmGg~~a~~LaALDdRIka~v~~~~l~~~~ 263 (390)
T PF12715_consen 195 LLMLGRSLAGLMAWDDMRALDFLASLPE-----------VDPDRIGCMGFSMGGYRAWWLAALDDRIKATVANGYLCTTQ 263 (390)
T ss_dssp HHHTT--HHHHHHHHHHHHHHHHCT-TT-----------EEEEEEEEEEEGGGHHHHHHHHHH-TT--EEEEES-B--HH
T ss_pred HHHcCcCHHHHHHHHHHHHHHHHhcCcc-----------cCccceEEEeecccHHHHHHHHHcchhhHhHhhhhhhhccc
Confidence 11366678999988764 999999999999999999999887633222111100000
Q ss_pred --------------CCCC----ccCCC-----CCcccccC-CCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEE
Q 042897 120 --------------EEDP----ILNPA-----LDPNLKMM-RSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQ 175 (208)
Q Consensus 120 --------------~~~~----~~~~~-----~~~~~~~~-~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~ 175 (208)
...+ .+-|- ...++..+ ...|+|++.|+.|.+.+..+..++..... .+++++.
T Consensus 264 ~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~PdIasliAPRPll~~nG~~Dklf~iV~~AY~~~~~p---~n~~~~~ 340 (390)
T PF12715_consen 264 ERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPDIASLIAPRPLLFENGGKDKLFPIVRRAYAIMGAP---DNFQIHH 340 (390)
T ss_dssp HHHHHB----TTS----SS-GGG--TTCCCC--HHHHHHTTTTS-EEESS-B-HHHHHHHHHHHHHTT-G---GGEEE--
T ss_pred hhhHhhccccccccCcCcchhhhhCccHHhhCccHHHHHHhCCCcchhhcCCcccccHHHHHHHHhcCCC---cceEEee
Confidence 0000 11221 11222222 11299999999999887766666655443 4899999
Q ss_pred eCC
Q 042897 176 TLG 178 (208)
Q Consensus 176 ~~~ 178 (208)
||.
T Consensus 341 ~p~ 343 (390)
T PF12715_consen 341 YPK 343 (390)
T ss_dssp -GG
T ss_pred ccc
Confidence 985
No 101
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.24 E-value=1.6e-10 Score=90.71 Aligned_cols=89 Identities=25% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC---CCchh-hHHHHHHHHHHhhccCCCCCCc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH---LPIAH-EDSWAGLEWVASHSYGQGPEPL 76 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~---~~~~~-~d~~~~~~~l~~~~~~~~~~~~ 76 (208)
.|+||++-|- .+...+ +.....+.++.+|++++++|.++..... +.... .-.+++++||.+.+.
T Consensus 190 ~P~VIv~gGl---Ds~qeD--~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p~------- 257 (411)
T PF06500_consen 190 YPTVIVCGGL---DSLQED--LYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRPW------- 257 (411)
T ss_dssp EEEEEEE--T---TS-GGG--GHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHSTT-------
T ss_pred CCEEEEeCCc---chhHHH--HHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCCc-------
Confidence 3777776662 222221 2333455667889999999998765432 22211 125678899988653
Q ss_pred ccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 77 LNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 77 ~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+|..||+++|.|+||++|..+|.-.
T Consensus 258 ----VD~~RV~~~G~SfGGy~AvRlA~le 282 (411)
T PF06500_consen 258 ----VDHTRVGAWGFSFGGYYAVRLAALE 282 (411)
T ss_dssp ----EEEEEEEEEEETHHHHHHHHHHHHT
T ss_pred ----cChhheEEEEeccchHHHHHHHHhc
Confidence 9999999999999999999998643
No 102
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.23 E-value=9.1e-12 Score=88.03 Aligned_cols=179 Identities=13% Similarity=0.056 Sum_probs=100.0
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC--CCC------------CCCCC-----chhhHHHHHH
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR--LAP------------EHHLP-----IAHEDSWAGL 61 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~--~~~------------~~~~~-----~~~~d~~~~~ 61 (208)
.|+|.|+.| ..-..++..-.....+.+.+.|+.|+.||-. +.. +..|. .....-.+.+
T Consensus 44 ~P~lf~LSG---LTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMY 120 (283)
T KOG3101|consen 44 CPVLFYLSG---LTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMY 120 (283)
T ss_pred CceEEEecC---CcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHH
Confidence 389999998 3333332112344567788889999999942 110 11111 1112234556
Q ss_pred HHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHH----------------------HhhhccCCCCC
Q 042897 62 EWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEM----------------------YAYMCPTSAGF 119 (208)
Q Consensus 62 ~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~----------------------~~~~~~~~~~~ 119 (208)
+|+.+....+--. -...+|+.++.|.||||||+-|+..+.++... +..+++.....
T Consensus 121 dYv~kELp~~l~~--~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~cpWGqKAf~gYLG~~ka~ 198 (283)
T KOG3101|consen 121 DYVVKELPQLLNS--ANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINCPWGQKAFTGYLGDNKAQ 198 (283)
T ss_pred HHHHHHHHHHhcc--ccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccCcchHHHhhcccCCChHH
Confidence 6665443221000 01238899999999999999999888777222 22222211111
Q ss_pred CCCCccCCCCCcccccCCCCcEEEEeeCCCCChhh---HHHHHHHHHhcCCCcceEEEEeCCCCccccccC
Q 042897 120 EEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRNR---GVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFN 187 (208)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~ 187 (208)
++.+............+. -+||-.|+.|.+... -+.+.++.++.. +.++.+...+|-.|++.+..
T Consensus 199 -W~~yDat~lik~y~~~~~-~ilIdqG~~D~Fl~~qLlPe~l~~a~~~~~-~~~v~~r~~~gyDHSYyfIa 266 (283)
T KOG3101|consen 199 -WEAYDATHLIKNYRGVGD-DILIDQGAADNFLAEQLLPENLLEACKATW-QAPVVFRLQEGYDHSYYFIA 266 (283)
T ss_pred -HhhcchHHHHHhcCCCCc-cEEEecCccchhhhhhcChHHHHHHhhccc-cccEEEEeecCCCcceeeeh
Confidence 111111122233344444 699999999986642 144555555332 23788888999999877643
No 103
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.19 E-value=5.9e-10 Score=95.46 Aligned_cols=173 Identities=13% Similarity=0.144 Sum_probs=105.2
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCC------CCchhhHHHHHHHHHHhhccCCCCCC----cccCCCCCCceEEeecChhH
Q 042897 26 LTSLVVKANIVAITIDYRLAPEHH------LPIAHEDSWAGLEWVASHSYGQGPEP----LLNRHADFGRVFLAGESAGA 95 (208)
Q Consensus 26 ~~~~~~~~g~~v~~~d~~~~~~~~------~~~~~~d~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~i~l~G~S~GG 95 (208)
....+.++||+|+..|.|+..+.. .....+|..++++||......+. ++ ..+..=...+|+++|.|+||
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~-d~~~~~~~kq~WsnGkVGm~G~SY~G 349 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYT-DRTRGKEVKADWSNGKVAMTGKSYLG 349 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCcccc-ccccccccccCCCCCeeEEEEEcHHH
Confidence 356677889999999999764321 24566899999999986422100 00 00000124799999999999
Q ss_pred HHHHHHHHHHHHHHhhhccC------------------CCCC---CCC--------------------------------
Q 042897 96 NIAHYVAVQLDEMYAYMCPT------------------SAGF---EED-------------------------------- 122 (208)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~------------------~~~~---~~~-------------------------------- 122 (208)
++++.+|.....-++.+++. ..+. +.+
T Consensus 350 ~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 429 (767)
T PRK05371 350 TLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLAELTA 429 (767)
T ss_pred HHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHhhhhh
Confidence 99998888651111000000 0000 000
Q ss_pred ------CccC-----CCCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCC
Q 042897 123 ------PILN-----PALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPK 189 (208)
Q Consensus 123 ------~~~~-----~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~ 189 (208)
.... ......+..+.. |+|++||..|..++ ++.++++.+++.+. +.+++..++ +|.....
T Consensus 430 ~~~~~~~~y~~fW~~rn~~~~~~kIkv-PvLlIhGw~D~~V~~~~s~~ly~aL~~~g~--pkkL~l~~g-~H~~~~~--- 502 (767)
T PRK05371 430 AQDRKTGDYNDFWDDRNYLKDADKIKA-SVLVVHGLNDWNVKPKQVYQWWDALPENGV--PKKLFLHQG-GHVYPNN--- 502 (767)
T ss_pred hhhhcCCCccHHHHhCCHhhHhhCCCC-CEEEEeeCCCCCCChHHHHHHHHHHHhcCC--CeEEEEeCC-CccCCCc---
Confidence 0000 011123345555 99999999999874 67788999998876 788877765 7854331
Q ss_pred CCchHHHHHHHHHHHHhc
Q 042897 190 SKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 190 ~~~~~~~~~~i~~fl~~~ 207 (208)
....++.+.+.+|+.++
T Consensus 503 -~~~~d~~e~~~~Wfd~~ 519 (767)
T PRK05371 503 -WQSIDFRDTMNAWFTHK 519 (767)
T ss_pred -hhHHHHHHHHHHHHHhc
Confidence 12356777888888653
No 104
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.17 E-value=1.4e-09 Score=89.27 Aligned_cols=84 Identities=18% Similarity=0.085 Sum_probs=52.3
Q ss_pred CEEEEEcCCccccCCCCC-chhHHHHHHHHHhCCcEEEEecCCCCCCC----CCCchh-hHHHHHHHHHHhhccCCCCCC
Q 042897 2 PLLIHYHGGGFCLGSALD-MPFKRFLTSLVVKANIVAITIDYRLAPEH----HLPIAH-EDSWAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~d~~~~~~~----~~~~~~-~d~~~~~~~l~~~~~~~~~~~ 75 (208)
+.||++||-. +.....+ .. ...+.+.+.++||.|+++|++..... .+..-. +++.++++.+.+.
T Consensus 189 ~PlLiVp~~i-~k~yilDL~p-~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~-------- 258 (532)
T TIGR01838 189 TPLLIVPPWI-NKYYILDLRP-QNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAI-------- 258 (532)
T ss_pred CcEEEECccc-ccceeeeccc-chHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHh--------
Confidence 5688899832 1111000 00 12344555667999999999864322 122222 4577788888764
Q ss_pred cccCCCCCCceEEeecChhHHHHHH
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHY 100 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~ 100 (208)
.+.+++.++|||+||.++..
T Consensus 259 -----~g~~kv~lvG~cmGGtl~a~ 278 (532)
T TIGR01838 259 -----TGEKQVNCVGYCIGGTLLST 278 (532)
T ss_pred -----cCCCCeEEEEECcCcHHHHH
Confidence 45689999999999998633
No 105
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=99.16 E-value=8.5e-11 Score=97.90 Aligned_cols=96 Identities=31% Similarity=0.454 Sum_probs=74.7
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC---------CCCchhhHHHHHHHHHHhhccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH---------HLPIAHEDSWAGLEWVASHSYGQ 71 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~---------~~~~~~~d~~~~~~~l~~~~~~~ 71 (208)
+||++|+|||++..++..+. ....-...+......|+.+.||++.-. +..-.+.|...|++|+++.+..+
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~-~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~F 190 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSF-EIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSF 190 (545)
T ss_pred CCEEEEEeCCceeeccccch-hhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhc
Confidence 59999999999998885431 011124555666899999999986311 23446779999999999999888
Q ss_pred CCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 72 GPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 72 ~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+ .|+++|.|+|||+||.++..++...
T Consensus 191 G--------Gdp~~vTl~G~saGa~~v~~l~~Sp 216 (545)
T KOG1516|consen 191 G--------GDPKNVTLFGHSAGAASVSLLTLSP 216 (545)
T ss_pred C--------CCCCeEEEEeechhHHHHHHHhcCH
Confidence 7 8999999999999999997766643
No 106
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.15 E-value=9.5e-10 Score=97.42 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=46.0
Q ss_pred cccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEE-EEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 133 LKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEF-YQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~-~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+..+.. |+++++|+.|.+++ ..+.+.+.+. +.++ +.++++||...+.. ....+++|..|.+||+++
T Consensus 293 L~~i~~-P~L~i~G~~D~ivp~~~~~~l~~~i~------~a~~~~~~~~~GH~g~~~g--~~a~~~~wp~i~~wl~~~ 361 (994)
T PRK07868 293 LADITC-PVLAFVGEVDDIGQPASVRGIRRAAP------NAEVYESLIRAGHFGLVVG--SRAAQQTWPTVADWVKWL 361 (994)
T ss_pred hhhCCC-CEEEEEeCCCCCCCHHHHHHHHHhCC------CCeEEEEeCCCCCEeeeec--hhhhhhhChHHHHHHHHh
Confidence 455665 99999999999875 3455544332 3355 56688999644432 344568899999999976
No 107
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.14 E-value=2.2e-09 Score=89.42 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=65.3
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-----C-CchhhHHHHHHHHHHhhccCCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-----L-PIAHEDSWAGLEWVASHSYGQGPE 74 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-----~-~~~~~d~~~~~~~l~~~~~~~~~~ 74 (208)
+|+||++||.+........ +.......++++||.|+.+|+|+..... + ....+|+.++++|+.++.
T Consensus 22 ~P~Il~~~gyg~~~~~~~~--~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~------ 93 (550)
T TIGR00976 22 VPVILSRTPYGKDAGLRWG--LDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLLGSDEAADGYDLVDWIAKQP------ 93 (550)
T ss_pred CCEEEEecCCCCchhhccc--cccccHHHHHhCCcEEEEEeccccccCCCceEecCcccchHHHHHHHHHHhCC------
Confidence 5899999996643321000 1111234567779999999999764321 2 567789999999998763
Q ss_pred CcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 75 PLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 75 ~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+|+++|+|+||.+++.++...
T Consensus 94 ------~~~~~v~~~G~S~GG~~a~~~a~~~ 118 (550)
T TIGR00976 94 ------WCDGNVGMLGVSYLAVTQLLAAVLQ 118 (550)
T ss_pred ------CCCCcEEEEEeChHHHHHHHHhccC
Confidence 2236999999999999999988865
No 108
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.13 E-value=4.9e-10 Score=85.28 Aligned_cols=92 Identities=20% Similarity=0.291 Sum_probs=61.1
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHH-HHHHhCCcEEEEecCCCCCCCCCCch-------hhHHHHHHHHHHhhccCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLT-SLVVKANIVAITIDYRLAPEHHLPIA-------HEDSWAGLEWVASHSYGQG 72 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~-~~~~~~g~~v~~~d~~~~~~~~~~~~-------~~d~~~~~~~l~~~~~~~~ 72 (208)
.|++|++||.+. +... .|...+. .++.+.+++|+++|++......++.. .+++...+++|.+..
T Consensus 36 ~p~vilIHG~~~---~~~~-~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~---- 107 (275)
T cd00707 36 RPTRFIIHGWTS---SGEE-SWISDLRKAYLSRGDYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNT---- 107 (275)
T ss_pred CCcEEEEcCCCC---CCCC-cHHHHHHHHHHhcCCCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhc----
Confidence 489999999443 2211 2334443 45566689999999987533333222 245556666665542
Q ss_pred CCCcccCCCCCCceEEeecChhHHHHHHHHHHHHH
Q 042897 73 PEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDE 107 (208)
Q Consensus 73 ~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~ 107 (208)
+.+.+++.|+|||+||++|..++.+.+.
T Consensus 108 -------g~~~~~i~lIGhSlGa~vAg~~a~~~~~ 135 (275)
T cd00707 108 -------GLSLENVHLIGHSLGAHVAGFAGKRLNG 135 (275)
T ss_pred -------CCChHHEEEEEecHHHHHHHHHHHHhcC
Confidence 1566899999999999999999877643
No 109
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.12 E-value=1.7e-09 Score=78.74 Aligned_cols=151 Identities=20% Similarity=0.126 Sum_probs=92.4
Q ss_pred CcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhh--
Q 042897 34 NIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAY-- 111 (208)
Q Consensus 34 g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~-- 111 (208)
-+.++.+.|++-..........|+.+..+.|......+ .......+.||||||.+|..+|.+.......
T Consensus 33 ~iel~avqlPGR~~r~~ep~~~di~~Lad~la~el~~~---------~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~ 103 (244)
T COG3208 33 DIELLAVQLPGRGDRFGEPLLTDIESLADELANELLPP---------LLDAPFALFGHSMGAMLAFEVARRLERAGLPPR 103 (244)
T ss_pred hhheeeecCCCcccccCCcccccHHHHHHHHHHHhccc---------cCCCCeeecccchhHHHHHHHHHHHHHcCCCcc
Confidence 47789999988766666777888888888887765421 3346799999999999999999987221111
Q ss_pred -------hccC---------------------CCCCC----CCC----ccCC---------C--CCcccccCCCCcEEEE
Q 042897 112 -------MCPT---------------------SAGFE----EDP----ILNP---------A--LDPNLKMMRSDRVLVC 144 (208)
Q Consensus 112 -------~~~~---------------------~~~~~----~~~----~~~~---------~--~~~~~~~~~~~p~li~ 144 (208)
..|. ..+.. .++ ...| + ....-..+.. |+.++
T Consensus 104 ~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~-pi~~~ 182 (244)
T COG3208 104 ALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPELMALFLPILRADFRALESYRYPPPAPLAC-PIHAF 182 (244)
T ss_pred eEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCc-ceEEe
Confidence 0000 00000 000 0000 0 0011133444 99999
Q ss_pred eeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 145 VAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 145 ~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
.|++|..+. ....+.+..+ +..++..++| +|.|.+ ++.+++.+.|.+.+.
T Consensus 183 ~G~~D~~vs~~~~~~W~~~t~-----~~f~l~~fdG-gHFfl~-----~~~~~v~~~i~~~l~ 234 (244)
T COG3208 183 GGEKDHEVSRDELGAWREHTK-----GDFTLRVFDG-GHFFLN-----QQREEVLARLEQHLA 234 (244)
T ss_pred ccCcchhccHHHHHHHHHhhc-----CCceEEEecC-cceehh-----hhHHHHHHHHHHHhh
Confidence 999999774 3333333332 1679999985 997665 233566777776664
No 110
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=4.7e-10 Score=82.40 Aligned_cols=160 Identities=23% Similarity=0.155 Sum_probs=97.9
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-----------CCC-----------------c
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-----------HLP-----------------I 52 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-----------~~~-----------------~ 52 (208)
+|.||-.||.+...+....+ -.+ +..||.|+..|.|+.... ..+ .
T Consensus 83 ~P~vV~fhGY~g~~g~~~~~------l~w-a~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~ 155 (321)
T COG3458 83 LPAVVQFHGYGGRGGEWHDM------LHW-AVAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRG 155 (321)
T ss_pred cceEEEEeeccCCCCCcccc------ccc-cccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEee
Confidence 59999999977665533221 222 445999999999864211 111 1
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhh--hccCCCCCC-------CCC
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAY--MCPTSAGFE-------EDP 123 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~--~~~~~~~~~-------~~~ 123 (208)
...|+..+++-+.+... +|..||.+.|.|+||.+++.++.-.+..-+. .+|..+... ..+
T Consensus 156 v~~D~~~ave~~~sl~~-----------vde~Ri~v~G~SqGGglalaaaal~~rik~~~~~~Pfl~df~r~i~~~~~~~ 224 (321)
T COG3458 156 VFLDAVRAVEILASLDE-----------VDEERIGVTGGSQGGGLALAAAALDPRIKAVVADYPFLSDFPRAIELATEGP 224 (321)
T ss_pred ehHHHHHHHHHHhccCc-----------cchhheEEeccccCchhhhhhhhcChhhhcccccccccccchhheeecccCc
Confidence 23588888888887654 8999999999999999998877654221111 111111000 000
Q ss_pred c--------------------cCCCCCccc-ccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcc
Q 042897 124 I--------------------LNPALDPNL-KMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHC 182 (208)
Q Consensus 124 ~--------------------~~~~~~~~~-~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~ 182 (208)
+ ++-....++ ..+.. |+++..|-.|++++.+-.++..-.=.+ ..++.+||.-+|.
T Consensus 225 ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~-pvL~svgL~D~vcpPstqFA~yN~l~~---~K~i~iy~~~aHe 300 (321)
T COG3458 225 YDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKV-PVLMSVGLMDPVCPPSTQFAAYNALTT---SKTIEIYPYFAHE 300 (321)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhcc-ceEEeecccCCCCCChhhHHHhhcccC---CceEEEeeccccc
Confidence 0 000011122 33444 999999999999976665555444333 5677888877895
No 111
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.09 E-value=1.3e-10 Score=87.70 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=55.6
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCC----CCCCCCCchhhHHHHHHHHHHhhccCCCCCCccc
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRL----APEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~----~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
+||||-| .........|...++..+.+.||.|+.+..+- .........++|+.++++||+.....
T Consensus 35 ~llfIGG---LtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~~D~~eI~~~v~ylr~~~~g-------- 103 (303)
T PF08538_consen 35 ALLFIGG---LTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLDRDVEEIAQLVEYLRSEKGG-------- 103 (303)
T ss_dssp EEEEE-----TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HHHHHHHHHHHHHHHHHHS----------
T ss_pred EEEEECC---CCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhhhHHHHHHHHHHHHHHhhcc--------
Confidence 6788877 11112222456777777777899999997653 33345566788999999999986210
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....++|+|+|||.|..-++.++.+.
T Consensus 104 -~~~~~kIVLmGHSTGcQdvl~Yl~~~ 129 (303)
T PF08538_consen 104 -HFGREKIVLMGHSTGCQDVLHYLSSP 129 (303)
T ss_dssp -----S-EEEEEECCHHHHHHHHHHH-
T ss_pred -ccCCccEEEEecCCCcHHHHHHHhcc
Confidence 02468999999999999999999877
No 112
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.08 E-value=6.2e-09 Score=79.78 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=45.0
Q ss_pred CcEEEEeeCCCCChh--hHHHHHHHHHhcC-CCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 139 DRVLVCVAEKDGLRN--RGVYYYETLKKSE-WHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 139 ~p~li~~G~~D~~~~--~~~~~~~~l~~~g-~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
.|++|.||..|.+++ .++++.+++-+.| . +|++..+++.+|.-.... -.....+||..
T Consensus 220 ~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a--~V~~~~~~~~~H~~~~~~--------~~~~a~~Wl~~ 280 (290)
T PF03583_consen 220 VPVLIYQGTADEVVPPADTDALVAKWCAAGGA--DVEYVRYPGGGHLGAAFA--------SAPDALAWLDD 280 (290)
T ss_pred CCEEEEecCCCCCCChHHHHHHHHHHHHcCCC--CEEEEecCCCChhhhhhc--------CcHHHHHHHHH
Confidence 499999999999886 6788888888888 6 999999999999644321 13455666654
No 113
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.02 E-value=3.3e-08 Score=78.78 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=50.1
Q ss_pred ccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCC-CCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 134 KMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLG-EDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 134 ~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~-~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
..+.. |+++++|+.|.+++ ..+++.+.+...+. +++++++++ .||... .++.+++.+.|.+||++.
T Consensus 320 ~~I~~-PtLvI~G~~D~l~p~~~~~~la~~lp~~~~--~a~l~~I~s~~GH~~~-----le~p~~~~~~I~~FL~~~ 388 (389)
T PRK06765 320 SNIEA-NVLMIPCKQDLLQPPRYNYKMVDILQKQGK--YAEVYEIESINGHMAG-----VFDIHLFEKKIYEFLNRK 388 (389)
T ss_pred hcCCC-CEEEEEeCCCCCCCHHHHHHHHHHhhhcCC--CeEEEEECCCCCcchh-----hcCHHHHHHHHHHHHccc
Confidence 34555 99999999999875 55677777776543 789999986 899533 355578999999999763
No 114
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.98 E-value=7e-09 Score=73.12 Aligned_cols=168 Identities=16% Similarity=0.218 Sum_probs=100.8
Q ss_pred EEEEEcC-CccccCCCCCchhHHHHHHHHHhCCcEEEEecCCC-C-CCCCCCchhhHHHHHHHHHHhhccCCCCCCcccC
Q 042897 3 LLIHYHG-GGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRL-A-PEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNR 79 (208)
Q Consensus 3 ~vi~~HG-g~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~-~-~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~ 79 (208)
++||+.| |||.. ....+...+++.|+.|+.+|-.. . ....-.+...|+.+.+++-...
T Consensus 4 ~~v~~SGDgGw~~-------~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~------------ 64 (192)
T PF06057_consen 4 LAVFFSGDGGWRD-------LDKQIAEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRAR------------ 64 (192)
T ss_pred EEEEEeCCCCchh-------hhHHHHHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHH------------
Confidence 5788888 77752 23445777788899999999431 1 2233345567888888877665
Q ss_pred CCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccC----CCCCCCC-------------CccCCCCCcccccCCCCcEE
Q 042897 80 HADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPT----SAGFEED-------------PILNPALDPNLKMMRSDRVL 142 (208)
Q Consensus 80 ~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~~~~~~~~~~~~~~~~p~l 142 (208)
-..++++|+|.|.|+-+...+.-+.+...+.-+.. ..+...+ ....-....++..++..|++
T Consensus 65 -w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv~~wlg~~~~~~~~~~~pei~~l~~~~v~ 143 (192)
T PF06057_consen 65 -WGRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIHVSGWLGMGGDDAAYPVIPEIAKLPPAPVQ 143 (192)
T ss_pred -hCCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEEhhhhcCCCCCcccCCchHHHHhCCCCeEE
Confidence 34689999999999998876665552221111110 0000000 00000123455666655899
Q ss_pred EEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 143 VCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 143 i~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
-++|++|.-. +...++.. +++.+..||+.| |.- ..+.+.+.|++-+++
T Consensus 144 CiyG~~E~d~-----~cp~l~~~----~~~~i~lpGgHH-fd~------dy~~La~~Il~~l~~ 191 (192)
T PF06057_consen 144 CIYGEDEDDS-----LCPSLRQP----GVEVIALPGGHH-FDG------DYDALAKRILDALKA 191 (192)
T ss_pred EEEcCCCCCC-----cCccccCC----CcEEEEcCCCcC-CCC------CHHHHHHHHHHHHhc
Confidence 9999987531 12235555 569999998555 443 235677777776654
No 115
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.97 E-value=3.1e-09 Score=77.92 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=97.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
+|+|+|+||-... +..| ..+-...++.||+|++|+....-.......++++.+.++||.+.....-. ....
T Consensus 46 yPVilF~HG~~l~-----ns~Y-s~lL~HIASHGfIVVAPQl~~~~~p~~~~Ei~~aa~V~~WL~~gL~~~Lp---~~V~ 116 (307)
T PF07224_consen 46 YPVILFLHGFNLY-----NSFY-SQLLAHIASHGFIVVAPQLYTLFPPDGQDEIKSAASVINWLPEGLQHVLP---ENVE 116 (307)
T ss_pred ccEEEEeechhhh-----hHHH-HHHHHHHhhcCeEEEechhhcccCCCchHHHHHHHHHHHHHHhhhhhhCC---CCcc
Confidence 5999999993321 1123 33445556779999999965433344556778889999999876433211 1112
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHH--HHHhhhccCC--CCCC----CCCccCCCCCcccccCCCCcEEEEeeCCCC--
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLD--EMYAYMCPTS--AGFE----EDPILNPALDPNLKMMRSDRVLVCVAEKDG-- 150 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~--~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~p~li~~G~~D~-- 150 (208)
.+.++++++|||.||..|..+|..+. ..+...++.. .+.. ..|.+.. ....-=++.. |++++-..--+
T Consensus 117 ~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~~t~P~iLt-y~p~SF~l~i-Pv~VIGtGLg~~~ 194 (307)
T PF07224_consen 117 ANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGKQTPPPILT-YVPQSFDLDI-PVLVIGTGLGPKR 194 (307)
T ss_pred cccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCCCCCCCeee-cCCcccccCC-ceEEEecCcCccc
Confidence 57799999999999999999998652 1122222210 0110 1111111 1111112333 78887765541
Q ss_pred --C---h-h---hHHHHHHHHHhcCCCcceEEEEeCCCCccc
Q 042897 151 --L---R-N---RGVYYYETLKKSEWHGKAEFYQTLGEDHCF 183 (208)
Q Consensus 151 --~---~-~---~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~ 183 (208)
+ + + ..++|+...+. ++-.+...+.||.-
T Consensus 195 ~~~~~~CaP~gvnH~eFf~eCk~-----p~~hfV~~dYGHmD 231 (307)
T PF07224_consen 195 NPLFPPCAPDGVNHEEFFNECKP-----PCAHFVAKDYGHMD 231 (307)
T ss_pred cCCCCCCCCCCcCHHHHHHhhcc-----cceeeeeccccccc
Confidence 1 1 2 35788888875 44455556789964
No 116
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.97 E-value=4e-09 Score=81.28 Aligned_cols=95 Identities=23% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC----------CC-----chhhHHHHHHHHHH
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH----------LP-----IAHEDSWAGLEWVA 65 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~----------~~-----~~~~d~~~~~~~l~ 65 (208)
+|+|++-||-|.. ..+ ..++...+++.||.|..+++..+.... +. ....|+...+++|.
T Consensus 71 ~PlvvlshG~Gs~---~~~---f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~ 144 (365)
T COG4188 71 LPLVVLSHGSGSY---VTG---FAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALL 144 (365)
T ss_pred CCeEEecCCCCCC---ccc---hhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHH
Confidence 6999999995533 322 466688888999999999998653211 11 33468889999988
Q ss_pred hhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 66 SHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+. .+. +.+..++|..+|+++|||.||+.++.++...
T Consensus 145 ~~-~~s---P~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~ 180 (365)
T COG4188 145 QL-TAS---PALAGRLDPQRVGVLGHSFGGYTAMELAGAE 180 (365)
T ss_pred Hh-hcC---cccccccCccceEEEecccccHHHHHhcccc
Confidence 76 111 2244569999999999999999999887655
No 117
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.97 E-value=1.4e-09 Score=81.09 Aligned_cols=102 Identities=23% Similarity=0.257 Sum_probs=64.3
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec-CCCCC--CC--CC------CchhhHHHHHHHHHHhhccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID-YRLAP--EH--HL------PIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d-~~~~~--~~--~~------~~~~~d~~~~~~~l~~~~~~ 70 (208)
|+||++||++....--. ...-+.+++.+.||.|+.|| |+..- +. .. ...+.|+....+.+.....+
T Consensus 62 pLvv~LHG~~~sgag~~---~~sg~d~lAd~~gFlV~yPdg~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~ 138 (312)
T COG3509 62 PLVVVLHGSGGSGAGQL---HGTGWDALADREGFLVAYPDGYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNE 138 (312)
T ss_pred CEEEEEecCCCChHHhh---cccchhhhhcccCcEEECcCccccccCCCcccccCCcccccCCccHHHHHHHHHHHHHHh
Confidence 79999999664332211 12334678888999999995 33221 11 11 22344443333333333333
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhcc
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCP 114 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~ 114 (208)
. ++|+.||+|.|-|.||.++..+++.....+....+
T Consensus 139 ~--------gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~ 174 (312)
T COG3509 139 Y--------GIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAP 174 (312)
T ss_pred c--------CcCcceEEEEeeCcHHHHHHHHHhcCcccccceee
Confidence 3 39999999999999999999999987666554433
No 118
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.94 E-value=1.9e-09 Score=82.14 Aligned_cols=93 Identities=19% Similarity=0.215 Sum_probs=61.9
Q ss_pred CCEEEEEcCCccccCCCCCc----hhHHHHHHHHHhCCcEEEEecCCCCCCC-----C-CCchhhHHHHHHHHHHhhccC
Q 042897 1 LPLLIHYHGGGFCLGSALDM----PFKRFLTSLVVKANIVAITIDYRLAPEH-----H-LPIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~----~~~~~~~~~~~~~g~~v~~~d~~~~~~~-----~-~~~~~~d~~~~~~~l~~~~~~ 70 (208)
+|+||..|+.+......... .........++++||+|+..|.|+.... . .+...+|..++++|+.+++
T Consensus 20 ~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~~~~e~~D~~d~I~W~~~Qp-- 97 (272)
T PF02129_consen 20 FPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPMSPNEAQDGYDTIEWIAAQP-- 97 (272)
T ss_dssp EEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TTSHHHHHHHHHHHHHHHHCT--
T ss_pred ccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccCChhHHHHHHHHHHHHHhCC--
Confidence 48999999966221000000 0000011127788999999999976422 1 3456789999999999874
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-...||+++|.|++|..++.+|...
T Consensus 98 ----------ws~G~VGm~G~SY~G~~q~~~A~~~ 122 (272)
T PF02129_consen 98 ----------WSNGKVGMYGISYGGFTQWAAAARR 122 (272)
T ss_dssp ----------TEEEEEEEEEETHHHHHHHHHHTTT
T ss_pred ----------CCCCeEEeeccCHHHHHHHHHHhcC
Confidence 4456999999999999999998855
No 119
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.94 E-value=1.4e-08 Score=81.41 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=58.8
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHH-HHHHh-CCcEEEEecCCCCCCCCCCch-------hhHHHHHHHHHHhhccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLT-SLVVK-ANIVAITIDYRLAPEHHLPIA-------HEDSWAGLEWVASHSYGQ 71 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~-~~~~~-~g~~v~~~d~~~~~~~~~~~~-------~~d~~~~~~~l~~~~~~~ 71 (208)
.|++|++||.+.. +.. ..|...+. .++.. ..++|+++|++......++.. .+++.+.+++|.+..
T Consensus 41 ~ptvIlIHG~~~s-~~~--~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~--- 114 (442)
T TIGR03230 41 TKTFIVIHGWTVT-GMF--ESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEF--- 114 (442)
T ss_pred CCeEEEECCCCcC-Ccc--hhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhh---
Confidence 4899999995432 211 12444333 34433 369999999987654444322 234555666665432
Q ss_pred CCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 72 GPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 72 ~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+++.+++.|+|||+||++|..++...
T Consensus 115 --------gl~l~~VhLIGHSLGAhIAg~ag~~~ 140 (442)
T TIGR03230 115 --------NYPWDNVHLLGYSLGAHVAGIAGSLT 140 (442)
T ss_pred --------CCCCCcEEEEEECHHHHHHHHHHHhC
Confidence 15678999999999999999988654
No 120
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.94 E-value=3.9e-09 Score=77.35 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=77.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCC--CCC-----------------C----C-----Cc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLA--PEH-----------------H----L-----PI 52 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~--~~~-----------------~----~-----~~ 52 (208)
+|-||.+||.+-+..-... -...++..+.+.++.++.+|-+.. +.. . + ..
T Consensus 4 k~riLcLHG~~~na~if~~--q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 81 (212)
T PF03959_consen 4 KPRILCLHGYGQNAEIFRQ--QTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDH 81 (212)
T ss_dssp --EEEEE--TT--HHHHHH--HTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SG
T ss_pred CceEEEeCCCCcCHHHHHH--HHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCcc
Confidence 4679999996633211100 012234444444677777774321 100 0 0 12
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHH--------hhhccCCCCCC-CCC
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMY--------AYMCPTSAGFE-EDP 123 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~--------~~~~~~~~~~~-~~~ 123 (208)
...++.+++++|.+...+.+ .=.+|+|||+||.+|..++....... +..+- .++.. ..+
T Consensus 82 ~~~~~~~sl~~l~~~i~~~G-----------PfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~-~sg~~p~~~ 149 (212)
T PF03959_consen 82 EYEGLDESLDYLRDYIEENG-----------PFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVF-ISGFPPPDP 149 (212)
T ss_dssp GG---HHHHHHHHHHHHHH--------------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEE-ES----EEE
T ss_pred cccCHHHHHHHHHHHHHhcC-----------CeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEE-EcccCCCch
Confidence 34567778888777654322 24689999999999998887653211 11111 11110 111
Q ss_pred ccCCCCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccc
Q 042897 124 ILNPALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHM 185 (208)
Q Consensus 124 ~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~ 185 (208)
...... .-..+.. |++-++|++|.+++ .++.+.+..... .+++..++ ||.++.
T Consensus 150 ~~~~~~--~~~~i~i-PtlHv~G~~D~~~~~~~s~~L~~~~~~~-----~~v~~h~g-GH~vP~ 204 (212)
T PF03959_consen 150 DYQELY--DEPKISI-PTLHVIGENDPVVPPERSEALAEMFDPD-----ARVIEHDG-GHHVPR 204 (212)
T ss_dssp -GTTTT----TT----EEEEEEETT-SSS-HHHHHHHHHHHHHH-----EEEEEESS-SSS---
T ss_pred hhhhhh--ccccCCC-CeEEEEeCCCCCcchHHHHHHHHhccCC-----cEEEEECC-CCcCcC
Confidence 111111 1233444 89999999999987 778888877652 48888875 886554
No 121
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.88 E-value=4.3e-08 Score=72.97 Aligned_cols=86 Identities=22% Similarity=0.238 Sum_probs=61.8
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-c---hhhHHHHHHHHHHhhccCCCCCCcc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-I---AHEDSWAGLEWVASHSYGQGPEPLL 77 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-~---~~~d~~~~~~~l~~~~~~~~~~~~~ 77 (208)
.+||=+|| +.|+..+ ..+++..+.+.|++++.++|++......+ . .-++-....+-|.+.. +
T Consensus 36 gTVv~~hG---sPGSH~D---FkYi~~~l~~~~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l---~----- 101 (297)
T PF06342_consen 36 GTVVAFHG---SPGSHND---FKYIRPPLDEAGIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDEL---G----- 101 (297)
T ss_pred eeEEEecC---CCCCccc---hhhhhhHHHHcCeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHc---C-----
Confidence 47999999 5566554 57889999999999999999986533222 1 2233333344444432 2
Q ss_pred cCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 78 NRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 78 ~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
++ .+++.+|||.|+-.|++++...
T Consensus 102 ---i~-~~~i~~gHSrGcenal~la~~~ 125 (297)
T PF06342_consen 102 ---IK-GKLIFLGHSRGCENALQLAVTH 125 (297)
T ss_pred ---CC-CceEEEEeccchHHHHHHHhcC
Confidence 55 8999999999999999999877
No 122
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.86 E-value=3.5e-08 Score=74.11 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=98.8
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC---------C--C-CC----------C-------
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP---------E--H-HL----------P------- 51 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~---------~--~-~~----------~------- 51 (208)
+|+|||-||=| +++. .|-.+... +++.||.|.++++|=.. . + .+ .
T Consensus 118 ~PvvvFSHGLg---gsRt--~YSa~c~~-LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 118 YPVVVFSHGLG---GSRT--LYSAYCTS-LASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred ccEEEEecccc---cchh--hHHHHhhh-HhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 59999999933 3332 23333344 46669999999988221 0 0 00 0
Q ss_pred -------chhhHHHHHHHHHHhhccCCCCCC-----------cccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhc
Q 042897 52 -------IAHEDSWAGLEWVASHSYGQGPEP-----------LLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMC 113 (208)
Q Consensus 52 -------~~~~d~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~ 113 (208)
.-.+++..|++-|.+. ...+++. -+|..++..++.|+|||-||..++........+. +.+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i-~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~Fr-caI 269 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQI-NDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFR-CAI 269 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHh-hcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccccee-eee
Confidence 1134666777666543 2211111 2344578889999999999999987665432211 111
Q ss_pred cCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcc
Q 042897 114 PTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHC 182 (208)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~ 182 (208)
. .|.+.-|........++. |++++.-+ |-...++-...++....+- .-.++++.|.-|-
T Consensus 270 -----~-lD~WM~Pl~~~~~~~arq-P~~finv~-~fQ~~en~~vmKki~~~n~--g~~~it~~GsVHq 328 (399)
T KOG3847|consen 270 -----A-LDAWMFPLDQLQYSQARQ-PTLFINVE-DFQWNENLLVMKKIESQNE--GNHVITLDGSVHQ 328 (399)
T ss_pred -----e-eeeeecccchhhhhhccC-CeEEEEcc-cccchhHHHHHHhhhCCCc--cceEEEEccceec
Confidence 1 455666655555566665 89988833 5455566666666666643 5588889999895
No 123
>PRK04940 hypothetical protein; Provisional
Probab=98.84 E-value=2.4e-07 Score=65.23 Aligned_cols=106 Identities=20% Similarity=0.215 Sum_probs=62.8
Q ss_pred CceEEeecChhHHHHHHHHHHHH-------------HHHhhhccCCCCCCCC-CccCCCCCcccccCCCCcEEEEeeCCC
Q 042897 84 GRVFLAGESAGANIAHYVAVQLD-------------EMYAYMCPTSAGFEED-PILNPALDPNLKMMRSDRVLVCVAEKD 149 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~li~~G~~D 149 (208)
+++.|+|.|+||+.|..++.++. .......+.. .+ ..+.+.-..+++.......+++..+.|
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~~L~~~ig~~----~~y~~~~~~h~~eL~~~~p~r~~vllq~gD 135 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEENMEGKIDRP----EEYADIATKCVTNFREKNRDRCLVILSRND 135 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHHHHHHHhCCC----cchhhhhHHHHHHhhhcCcccEEEEEeCCC
Confidence 46999999999999999998872 1111111100 00 000010001121111115799999999
Q ss_pred CChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 150 GLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 150 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
++.+--+ ..+++.. -.++...+|++|.|..+ ++.+..|++|++.
T Consensus 136 EvLDyr~-a~~~y~~-----~y~~~v~~GGdH~f~~f-------e~~l~~I~~F~~~ 179 (180)
T PRK04940 136 EVLDSQR-TAEELHP-----YYEIVWDEEQTHKFKNI-------SPHLQRIKAFKTL 179 (180)
T ss_pred cccCHHH-HHHHhcc-----CceEEEECCCCCCCCCH-------HHHHHHHHHHHhc
Confidence 9887333 2333322 12677889999998875 5788999999853
No 124
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.81 E-value=3.9e-08 Score=73.82 Aligned_cols=170 Identities=19% Similarity=0.181 Sum_probs=100.9
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhC---CcEEEEecCCCCC-----CCCCCchhhHH-HHHHHHHHhhccCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKA---NIVAITIDYRLAP-----EHHLPIAHEDS-WAGLEWVASHSYGQ 71 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~---g~~v~~~d~~~~~-----~~~~~~~~~d~-~~~~~~l~~~~~~~ 71 (208)
+|++++.||=.|....+ ....+.+++++. ...++.+||--.. -+........+ .+.+=++.+...
T Consensus 98 ~pvl~~~DG~~~~~~g~----i~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~~~n~~~~~~L~~eLlP~v~~~yp-- 171 (299)
T COG2382 98 YPVLYLQDGQDWFRSGR----IPRILDSLIAAGEIPPAILVGIDYIDVKKRREELHCNEAYWRFLAQELLPYVEERYP-- 171 (299)
T ss_pred ccEEEEeccHHHHhcCC----hHHHHHHHHHcCCCCCceEEecCCCCHHHHHHHhcccHHHHHHHHHHhhhhhhccCc--
Confidence 59999999955554332 234455555552 4668888875311 11111112222 223334444321
Q ss_pred CCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccC-C-------CCCcccccCCCCcEEE
Q 042897 72 GPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILN-P-------ALDPNLKMMRSDRVLV 143 (208)
Q Consensus 72 ~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~p~li 143 (208)
..-+.+.-+|+|.|+||.+++..+..+...+..++......+..+... + ............-++.
T Consensus 172 -------~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~l~ 244 (299)
T COG2382 172 -------TSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQPQGEVAESLKILHAIGTDERIVLT 244 (299)
T ss_pred -------ccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccccccchhhhhhhhhccCccceEEee
Confidence 124567789999999999999999999888888887644442221110 0 1111122222111333
Q ss_pred EeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccccc
Q 042897 144 CVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMF 186 (208)
Q Consensus 144 ~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~ 186 (208)
..++.+.+....+.+++.+++.++ +..+..|+| ||.+..+
T Consensus 245 ~g~~~~~~~~pNr~L~~~L~~~g~--~~~yre~~G-gHdw~~W 284 (299)
T COG2382 245 TGGEEGDFLRPNRALAAQLEKKGI--PYYYREYPG-GHDWAWW 284 (299)
T ss_pred cCCccccccchhHHHHHHHHhcCC--cceeeecCC-CCchhHh
Confidence 333344467889999999999998 999999998 9976664
No 125
>COG0627 Predicted esterase [General function prediction only]
Probab=98.78 E-value=5.2e-08 Score=75.06 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=45.7
Q ss_pred cEEEEeeCCCCChh----hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRN----RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
++++-+|..|.+.. ..+.+.+++.+.|. +.++...+++.|.+.++ ...+++.+.|+.+
T Consensus 249 ~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~--~~~~~~~~~G~Hsw~~w-------~~~l~~~~~~~a~ 310 (316)
T COG0627 249 ELLIDNGPADFFLAANNLSTRAFAEALRAAGI--PNGVRDQPGGDHSWYFW-------ASQLADHLPWLAG 310 (316)
T ss_pred ccccccccchhhhhhcccCHHHHHHHHHhcCC--CceeeeCCCCCcCHHHH-------HHHHHHHHHHHHH
Confidence 78888899888653 36889999999988 88888889999998775 3566777777654
No 126
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=98.78 E-value=9.4e-09 Score=81.38 Aligned_cols=90 Identities=28% Similarity=0.390 Sum_probs=72.1
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC----------CCCCCchhhHHHHHHHHHHhhccCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP----------EHHLPIAHEDSWAGLEWVASHSYGQG 72 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~----------~~~~~~~~~d~~~~~~~l~~~~~~~~ 72 (208)
|+||+.|||+..|+..-+.|. -..+++..+.+|+.++||.++ +.+....+-|.+-|++|+++++..++
T Consensus 137 VlVWiyGGGF~sGt~SLdvYd--Gk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFG 214 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYD--GKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFG 214 (601)
T ss_pred EEEEEEcCccccCCcceeeec--cceeeeeccEEEEEeeeeeccceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhC
Confidence 789999999999988643332 144556667899999999753 44556678899999999999998887
Q ss_pred CCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 73 PEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 73 ~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
.|+++|.|.|.|+|+..+..-+
T Consensus 215 --------Gnp~~vTLFGESAGaASv~aHL 236 (601)
T KOG4389|consen 215 --------GNPSRVTLFGESAGAASVVAHL 236 (601)
T ss_pred --------CCcceEEEeccccchhhhhhee
Confidence 8999999999999998764433
No 127
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=98.77 E-value=4.6e-08 Score=79.35 Aligned_cols=185 Identities=16% Similarity=0.088 Sum_probs=119.7
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-----------CCchhhHHHHHHHHHHhhccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-----------LPIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-----------~~~~~~d~~~~~~~l~~~~~~ 70 (208)
|++|+-.||--..-.+ .+...+ .+-.++|-..+..+.|++.+.. -....+|..++.+.|....-
T Consensus 422 pTll~aYGGF~vsltP---~fs~~~-~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgi- 496 (648)
T COG1505 422 PTLLYAYGGFNISLTP---RFSGSR-KLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGI- 496 (648)
T ss_pred ceEEEeccccccccCC---ccchhh-HHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCC-
Confidence 6777777654333332 233444 4555669999999999875431 12346789999999987642
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccC--------------CCCCCCCCccCCC--------
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPT--------------SAGFEEDPILNPA-------- 128 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-------- 128 (208)
..++++++.|-|.||-++-..+++.++++...+.. ...+ ...+-+|.
T Consensus 497 ----------tspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW-~~EYG~Pd~P~d~~~l 565 (648)
T COG1505 497 ----------TSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSW-IAEYGNPDDPEDRAFL 565 (648)
T ss_pred ----------CCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcccccchhh-HhhcCCCCCHHHHHHH
Confidence 57899999999999999987777775555443321 1111 23333331
Q ss_pred ----CCccccc-CCCCcEEEEeeCCCCCh-h-hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHH
Q 042897 129 ----LDPNLKM-MRSDRVLVCVAEKDGLR-N-RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLV 201 (208)
Q Consensus 129 ----~~~~~~~-~~~~p~li~~G~~D~~~-~-~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~ 201 (208)
...+++. ..-||+||.-+..|.-+ | ++++|+++|++.+. ++=+++--++||+-.- ...+....+..+.
T Consensus 566 ~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~--pv~~~e~t~gGH~g~~---~~~~~A~~~a~~~ 640 (648)
T COG1505 566 LAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGA--PVLLREETKGGHGGAA---PTAEIARELADLL 640 (648)
T ss_pred HhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCC--ceEEEeecCCcccCCC---ChHHHHHHHHHHH
Confidence 1222222 22259999999998755 5 88999999999986 7777777788996332 1223344556677
Q ss_pred HHHHhc
Q 042897 202 NFIKST 207 (208)
Q Consensus 202 ~fl~~~ 207 (208)
.||.+.
T Consensus 641 afl~r~ 646 (648)
T COG1505 641 AFLLRT 646 (648)
T ss_pred HHHHHh
Confidence 787653
No 128
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=98.76 E-value=1.7e-08 Score=74.32 Aligned_cols=58 Identities=26% Similarity=0.216 Sum_probs=44.6
Q ss_pred cEEEEecCCCCCCCCC------C-chhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 35 IVAITIDYRLAPEHHL------P-IAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 35 ~~v~~~d~~~~~~~~~------~-~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
|.|+++|.|+...... + -...|..+.++.+.+. ...++++++||||||.+++.++..+
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~vG~S~Gg~~~~~~a~~~ 65 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREA-------------LGIKKINLVGHSMGGMLALEYAAQY 65 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHH-------------HTTSSEEEEEETHHHHHHHHHHHHS
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHH-------------hCCCCeEEEEECCChHHHHHHHHHC
Confidence 6799999998654441 1 2356777788877775 3456699999999999999999887
No 129
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.74 E-value=3.5e-07 Score=64.63 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=74.9
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCC
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADF 83 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~ 83 (208)
|+++||.+.. ... -|...+.+.+... +.|-.++.. .| ..++- .+.|.+... ...
T Consensus 1 v~IvhG~~~s---~~~-HW~~wl~~~l~~~-~~V~~~~~~------~P-~~~~W---~~~l~~~i~-----------~~~ 54 (171)
T PF06821_consen 1 VLIVHGYGGS---PPD-HWQPWLERQLENS-VRVEQPDWD------NP-DLDEW---VQALDQAID-----------AID 54 (171)
T ss_dssp EEEE--TTSS---TTT-STHHHHHHHHTTS-EEEEEC--T------S---HHHH---HHHHHHCCH-----------C-T
T ss_pred CEEeCCCCCC---Ccc-HHHHHHHHhCCCC-eEEeccccC------CC-CHHHH---HHHHHHHHh-----------hcC
Confidence 6889995533 222 3678888877776 777776651 11 22222 222333322 123
Q ss_pred CceEEeecChhHHHHHHHHHHH-HHHHhhhccCCCCCC------CCCccCCCCCcccccCCCCcEEEEeeCCCCChh--h
Q 042897 84 GRVFLAGESAGANIAHYVAVQL-DEMYAYMCPTSAGFE------EDPILNPALDPNLKMMRSDRVLVCVAEKDGLRN--R 154 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~--~ 154 (208)
++++|+|||.|...++.++... .......+- ..+.+ ..+............++. |.+++.+++|+.++ .
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lL-VAp~~~~~~~~~~~~~~~f~~~p~~~l~~-~~~viaS~nDp~vp~~~ 132 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALL-VAPFDPDDPEPFPPELDGFTPLPRDPLPF-PSIVIASDNDPYVPFER 132 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEE-ES--SCGCHHCCTCGGCCCTTSHCCHHHC-CEEEEEETTBSSS-HHH
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEE-EcCCCcccccchhhhccccccCcccccCC-CeEEEEcCCCCccCHHH
Confidence 5699999999999999988522 111111100 00110 111111111112223344 77999999999885 5
Q ss_pred HHHHHHHHHhcCCCcceEEEEeCCCCccc
Q 042897 155 GVYYYETLKKSEWHGKAEFYQTLGEDHCF 183 (208)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~H~~ 183 (208)
++++++.+ +.+++.++++||..
T Consensus 133 a~~~A~~l-------~a~~~~~~~~GHf~ 154 (171)
T PF06821_consen 133 AQRLAQRL-------GAELIILGGGGHFN 154 (171)
T ss_dssp HHHHHHHH-------T-EEEEETS-TTSS
T ss_pred HHHHHHHc-------CCCeEECCCCCCcc
Confidence 56666655 34789999999954
No 130
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.71 E-value=4.1e-10 Score=84.62 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=61.3
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCC-----C----CC---ccCCCC-C-cccccCCCCcEEEEee
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFE-----E----DP---ILNPAL-D-PNLKMMRSDRVLVCVA 146 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~-----~----~~---~~~~~~-~-~~~~~~~~~p~li~~G 146 (208)
+.+.+.+|+|+||||..|+.++.++...+..+........ . .. ...+.. . .........++++..|
T Consensus 112 ~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G 191 (251)
T PF00756_consen 112 TDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDDEAWKENDPFDLIKALSQKKKPLRIYLDVG 191 (251)
T ss_dssp EEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTCGHHGGCHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred cccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCcHHhhhccHHHHhhhhhcccCCCeEEEEeC
Confidence 5555599999999999999999998766666544321100 0 00 000100 0 0011111127899999
Q ss_pred CCCCCh------------hhHHHHHHHHHhcCCCcceEEEEeCCCCccccc
Q 042897 147 EKDGLR------------NRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHM 185 (208)
Q Consensus 147 ~~D~~~------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~ 185 (208)
+.|... ...+.+.+.++..++ +..+..++ ++|.+..
T Consensus 192 ~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~~~~~-G~H~~~~ 239 (251)
T PF00756_consen 192 TKDEFGGWEDSAQILQFLANNRELAQLLKAKGI--PHTYHVFP-GGHDWAY 239 (251)
T ss_dssp TTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEEC--TTESEEEH-SESSHHH
T ss_pred CCCcccccccCHHHHHHHHHhHhhHHHHHHcCC--CceEEEec-Cccchhh
Confidence 999722 234555566667766 78888888 5886554
No 131
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.67 E-value=1.2e-07 Score=80.67 Aligned_cols=98 Identities=16% Similarity=0.082 Sum_probs=57.6
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC------------------------------
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL------------------------------ 50 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~------------------------------ 50 (208)
+|+||++||-+ ++.. .| ..+...+++.||.|+.+|+++.....+
T Consensus 449 ~P~VVllHG~~---g~~~--~~-~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~ 522 (792)
T TIGR03502 449 WPVVIYQHGIT---GAKE--NA-LAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNL 522 (792)
T ss_pred CcEEEEeCCCC---CCHH--HH-HHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCH
Confidence 47999999933 3322 13 344555677799999999986543311
Q ss_pred CchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 51 PIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 51 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.+.|+......+....... .+.-.....+..+++++||||||.++..++...
T Consensus 523 rQ~v~Dll~L~~~l~~~~~~~-~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~a 576 (792)
T TIGR03502 523 RQSILDLLGLRLSLNGSALAG-APLSGINVIDGSKVSFLGHSLGGIVGTSFIAYA 576 (792)
T ss_pred HHHHHHHHHHHHHHhcccccc-cccccccCCCCCcEEEEecCHHHHHHHHHHHhc
Confidence 122345554444444100000 000000125568999999999999999988753
No 132
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.67 E-value=6.1e-06 Score=61.05 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=48.9
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhC-CcEEEEecCCCCCCCC--CCchhhHHHHHHHHHHhhccCCCCCCccc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKA-NIVAITIDYRLAPEHH--LPIAHEDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~--~~~~~~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
|.++++||.+..... |......+.... .|.++.+|.++..... ......-+.....++..
T Consensus 22 ~~i~~~hg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~------------ 84 (282)
T COG0596 22 PPLVLLHGFPGSSSV-----WRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLSAYADDLAALLDA------------ 84 (282)
T ss_pred CeEEEeCCCCCchhh-----hHHHHHHhhccccceEEEEecccCCCCCCcccccHHHHHHHHHHHHHH------------
Confidence 579999996644322 222112222221 1899999999554433 11111112222222222
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....++.++|||+||.+++.++.+.
T Consensus 85 --~~~~~~~l~G~S~Gg~~~~~~~~~~ 109 (282)
T COG0596 85 --LGLEKVVLVGHSMGGAVALALALRH 109 (282)
T ss_pred --hCCCceEEEEecccHHHHHHHHHhc
Confidence 3334599999999999999999877
No 133
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=98.67 E-value=4.7e-07 Score=74.43 Aligned_cols=166 Identities=19% Similarity=0.122 Sum_probs=106.6
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC-----------CCchhhHHHHHHHHHHhhccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH-----------LPIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~-----------~~~~~~d~~~~~~~l~~~~~~ 70 (208)
|++|+-.|..+..-.+. +.....+ +..+||+..+.=-|++.+.. -.....|..++.++|.+...
T Consensus 449 p~lLygYGaYG~s~~p~---Fs~~~lS-LlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~- 523 (682)
T COG1770 449 PLLLYGYGAYGISMDPS---FSIARLS-LLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGY- 523 (682)
T ss_pred cEEEEEeccccccCCcC---cccceee-eecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCc-
Confidence 78888887443333222 2222233 45669998887777765332 12456899999999998753
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCC----------------CCCCccCC-------
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGF----------------EEDPILNP------- 127 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~------- 127 (208)
.++++|+++|-|+||.++..++-..+.+++..+....-. ..+++-+|
T Consensus 524 ----------~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~y~ 593 (682)
T COG1770 524 ----------TSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEYYD 593 (682)
T ss_pred ----------CCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHHHH
Confidence 677999999999999999988887766666654431110 02223333
Q ss_pred -----CCCcccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCc-ceEEEEeCCCCcc
Q 042897 128 -----ALDPNLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHG-KAEFYQTLGEDHC 182 (208)
Q Consensus 128 -----~~~~~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~-~~~~~~~~~~~H~ 182 (208)
+...++..-+-|++|+..|..|+-+. +-.++.++|++..... ++=+.+--++||+
T Consensus 594 yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHg 656 (682)
T COG1770 594 YIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHG 656 (682)
T ss_pred HHhhcCchhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCC
Confidence 22233333333599999999999774 5678888888875422 2334443578995
No 134
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.62 E-value=2.2e-08 Score=77.86 Aligned_cols=91 Identities=20% Similarity=0.266 Sum_probs=52.3
Q ss_pred CCEEEEEcCCccccCCCCCchhHHH-HHHHHHh--CCcEEEEecCCCCCCCCCCchhh-------HHHHHHHHHHhhccC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRF-LTSLVVK--ANIVAITIDYRLAPEHHLPIAHE-------DSWAGLEWVASHSYG 70 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~-~~~~~~~--~g~~v~~~d~~~~~~~~~~~~~~-------d~~~~~~~l~~~~~~ 70 (208)
+|++|++||.. ...... .|... ...++.. .+++|+++|+.......+..... .+...+..|.+..
T Consensus 71 ~pt~iiiHGw~--~~~~~~-~~~~~~~~all~~~~~d~NVI~VDWs~~a~~~Y~~a~~n~~~vg~~la~~l~~L~~~~-- 145 (331)
T PF00151_consen 71 KPTVIIIHGWT--GSGSSE-SWIQDMIKALLQKDTGDYNVIVVDWSRGASNNYPQAVANTRLVGRQLAKFLSFLINNF-- 145 (331)
T ss_dssp SEEEEEE--TT---TT-TT-THHHHHHHHHHCC--S-EEEEEEE-HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCeEEEEcCcC--Ccccch-hHHHHHHHHHHhhccCCceEEEEcchhhccccccchhhhHHHHHHHHHHHHHHHHhhc--
Confidence 58999999932 222122 24444 4456666 68999999997544333433332 2333445554322
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+++.++|.|+|||.||++|-.++...
T Consensus 146 ---------g~~~~~ihlIGhSLGAHvaG~aG~~~ 171 (331)
T PF00151_consen 146 ---------GVPPENIHLIGHSLGAHVAGFAGKYL 171 (331)
T ss_dssp ------------GGGEEEEEETCHHHHHHHHHHHT
T ss_pred ---------CCChhHEEEEeeccchhhhhhhhhhc
Confidence 27889999999999999999888654
No 135
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.61 E-value=3.7e-07 Score=67.43 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=42.1
Q ss_pred CcEEEEecCCCCCC----CCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 34 NIVAITIDYRLAPE----HHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 34 g~~v~~~d~~~~~~----~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.++..||..... .......+-+.++++.+.+...... ..+.+|+|+||||||.+|..++...
T Consensus 39 ~~d~ft~df~~~~s~~~g~~l~~q~~~~~~~i~~i~~~~~~~~--------~~~~~vilVgHSmGGlvar~~l~~~ 106 (225)
T PF07819_consen 39 HFDFFTVDFNEELSAFHGRTLQRQAEFLAEAIKYILELYKSNR--------PPPRSVILVGHSMGGLVARSALSLP 106 (225)
T ss_pred ceeEEEeccCccccccccccHHHHHHHHHHHHHHHHHhhhhcc--------CCCCceEEEEEchhhHHHHHHHhcc
Confidence 47788888864321 2223344556667777766542111 5679999999999999998777643
No 136
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.54 E-value=1.2e-06 Score=69.62 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCEEEEEcC-----CccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC---C--------C------CC-CchhhHH
Q 042897 1 LPLLIHYHG-----GGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP---E--------H------HL-PIAHEDS 57 (208)
Q Consensus 1 ~P~vi~~HG-----g~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~---~--------~------~~-~~~~~d~ 57 (208)
+|+|++.|| ..|....+ ...++.+++++||.|+.-+-|+.. . . ++ +-...|+
T Consensus 73 rp~Vll~HGLl~sS~~Wv~n~p-----~~sLaf~LadaGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDL 147 (403)
T KOG2624|consen 73 RPVVLLQHGLLASSSSWVLNGP-----EQSLAFLLADAGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDL 147 (403)
T ss_pred CCcEEEeeccccccccceecCc-----cccHHHHHHHcCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCH
Confidence 699999999 23433322 234578899999999999998632 0 0 01 1245799
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 58 WAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-+.++++.+. ...+++..+|||+|++....++...
T Consensus 148 PA~IdyIL~~-------------T~~~kl~yvGHSQGtt~~fv~lS~~ 182 (403)
T KOG2624|consen 148 PAMIDYILEK-------------TGQEKLHYVGHSQGTTTFFVMLSER 182 (403)
T ss_pred HHHHHHHHHh-------------ccccceEEEEEEccchhheehhccc
Confidence 9999999986 5679999999999999987666544
No 137
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.6e-06 Score=71.07 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=105.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCC-----------CchhhHHHHHHHHHHhhcc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHL-----------PIAHEDSWAGLEWVASHSY 69 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~-----------~~~~~d~~~~~~~l~~~~~ 69 (208)
.|.+|+.+||....-.+. |......+ .++|+..+..+-|++++... -....|.++++++|.+..-
T Consensus 470 ~P~LLygYGay~isl~p~---f~~srl~l-ld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gy 545 (712)
T KOG2237|consen 470 KPLLLYGYGAYGISLDPS---FRASRLSL-LDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGY 545 (712)
T ss_pred CceEEEEecccceeeccc---cccceeEE-EecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCC
Confidence 488899998664433332 33322333 44899999999998764321 1356899999999998753
Q ss_pred CCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCC----------------CCC----------
Q 042897 70 GQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFE----------------EDP---------- 123 (208)
Q Consensus 70 ~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~----------------~~~---------- 123 (208)
..+++..+.|.|+||.++..+.-+++.++.+.+....-.+ ...
T Consensus 546 -----------t~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~ 614 (712)
T KOG2237|consen 546 -----------TQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDL 614 (712)
T ss_pred -----------CCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccCChhhhhhh
Confidence 7889999999999999998888777666665544211000 000
Q ss_pred -ccCC-C-CCcccccCCCCcEEEEeeCCCCCh-h-hHHHHHHHHHhcCCC-----cceEEEEeCCCCcccc
Q 042897 124 -ILNP-A-LDPNLKMMRSDRVLVCVAEKDGLR-N-RGVYYYETLKKSEWH-----GKAEFYQTLGEDHCFH 184 (208)
Q Consensus 124 -~~~~-~-~~~~~~~~~~~p~li~~G~~D~~~-~-~~~~~~~~l~~~g~~-----~~~~~~~~~~~~H~~~ 184 (208)
+++| . .....++-.-|.+++..+.+|.-+ + ++.++.++++..-.. .++-+.+..++||+..
T Consensus 615 ~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~~~ 685 (712)
T KOG2237|consen 615 IKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHGAE 685 (712)
T ss_pred heecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccccC
Confidence 1111 0 000001111137999999998754 3 666666666543210 1466778899999643
No 138
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.51 E-value=7.2e-07 Score=64.51 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCCCc-----------hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecC
Q 042897 24 RFLTSLVVKANIVAITIDYRLAPEHHLPI-----------AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGES 92 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-----------~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S 92 (208)
...+..+++.||.|+..|||+..+...+. ...|..++++++++.. .-...+.+|||
T Consensus 47 RrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~~-------------~~~P~y~vgHS 113 (281)
T COG4757 47 RRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKAL-------------PGHPLYFVGHS 113 (281)
T ss_pred HHHHHHhhccCceEEEEecccccCCCccccccCccchhhhhhcchHHHHHHHHhhC-------------CCCceEEeecc
Confidence 33467778889999999999876543221 3468899999998853 23678999999
Q ss_pred hhHHHHHHHHHH
Q 042897 93 AGANIAHYVAVQ 104 (208)
Q Consensus 93 ~GG~~a~~~~~~ 104 (208)
+||.+.-.+..+
T Consensus 114 ~GGqa~gL~~~~ 125 (281)
T COG4757 114 FGGQALGLLGQH 125 (281)
T ss_pred ccceeecccccC
Confidence 999986554443
No 139
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.50 E-value=8.7e-06 Score=62.48 Aligned_cols=92 Identities=11% Similarity=0.113 Sum_probs=63.0
Q ss_pred EEEEcCCccccCCCCC-chhHHHHHHHHHhCCcEEEEecCCCCCCCCC----CchhhHHHHHHHHHHhhccCCCCCCccc
Q 042897 4 LIHYHGGGFCLGSALD-MPFKRFLTSLVVKANIVAITIDYRLAPEHHL----PIAHEDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~-~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~----~~~~~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
||+.-|.|........ ......+.+++.+.+.+|+..+||+...... ...+.|.++.++||.++..
T Consensus 140 iL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S~G~~s~~dLv~~~~a~v~yL~d~~~--------- 210 (365)
T PF05677_consen 140 ILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSSTGPPSRKDLVKDYQACVRYLRDEEQ--------- 210 (365)
T ss_pred EEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccCCCCCCHHHHHHHHHHHHHHHHhccc---------
Confidence 5666665544433211 0012346788888999999999997643322 3445677888899987532
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
++.+.+|++.|||.||.++..++.+.
T Consensus 211 -G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 211 -GPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -CCChheEEEeeccccHHHHHHHHHhc
Confidence 36789999999999999988765543
No 140
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.46 E-value=7.8e-06 Score=67.24 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=45.4
Q ss_pred HHHHHHhCCcEEEEecCCCCCCC----CCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHH
Q 042897 26 LTSLVVKANIVAITIDYRLAPEH----HLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYV 101 (208)
Q Consensus 26 ~~~~~~~~g~~v~~~d~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~ 101 (208)
+.+.+.++|+.|+.+|++..... .+..-++.+.++++.+.+. ....+|.++|+|+||.+++.+
T Consensus 239 lVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~-------------tG~~~vnl~GyC~GGtl~a~~ 305 (560)
T TIGR01839 239 FVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAI-------------TGSRDLNLLGACAGGLTCAAL 305 (560)
T ss_pred HHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHh-------------cCCCCeeEEEECcchHHHHHH
Confidence 34555667999999999864322 2233345667777777765 456889999999999999863
No 141
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=71.57 Aligned_cols=165 Identities=19% Similarity=0.138 Sum_probs=91.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCC--cEEEEecCCCCCC-CCCCchhhHHHHHHHHHHhhccCCCCCCccc
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKAN--IVAITIDYRLAPE-HHLPIAHEDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~~~~~~-~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
|++|++||.+. .+...+ +.-.+.+.+.-.| .-+..+|++..-+ .+.....+-...+.++...+...
T Consensus 177 pl~i~aps~p~-ap~tSd--~~~~wqs~lsl~gevvev~tfdl~n~igG~nI~h~ae~~vSf~r~kvlei~g-------- 245 (784)
T KOG3253|consen 177 PLAIKAPSTPL-APKTSD--RMWSWQSRLSLKGEVVEVPTFDLNNPIGGANIKHAAEYSVSFDRYKVLEITG-------- 245 (784)
T ss_pred ceEEeccCCCC-CCccch--HHHhHHHHHhhhceeeeeccccccCCCCCcchHHHHHHHHHHhhhhhhhhhc--------
Confidence 78999999772 222221 2222233444444 3356667664332 22223333333333332222111
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHHH-HHHhhhccCCCCCCCCCccCC--CCCcccccCCCCcEEEEeeCCCCChh--
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQLD-EMYAYMCPTSAGFEEDPILNP--ALDPNLKMMRSDRVLVCVAEKDGLRN-- 153 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~li~~G~~D~~~~-- 153 (208)
......|+|+|+|||+.++.++..... -...+.+- .+...+-...| ..++.+.++.. |+|++.|.+|..+.
T Consensus 246 -efpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVC--igypl~~vdgprgirDE~Lldmk~-PVLFV~Gsnd~mcspn 321 (784)
T KOG3253|consen 246 -EFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVC--IGYPLDTVDGPRGIRDEALLDMKQ-PVLFVIGSNDHMCSPN 321 (784)
T ss_pred -cCCCCceEEEecccCceeeEEeccccCCceEEEEEE--ecccccCCCcccCCcchhhHhcCC-ceEEEecCCcccCCHH
Confidence 155689999999999777766654331 11111111 11101111111 23455666665 99999999999984
Q ss_pred hHHHHHHHHHhcCCCcceEEEEeCCCCcccccc
Q 042897 154 RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMF 186 (208)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~ 186 (208)
..+++.+++++ .++++.+.+++|.+-.-
T Consensus 322 ~ME~vreKMqA-----~~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 322 SMEEVREKMQA-----EVELHVIGGADHSMAIP 349 (784)
T ss_pred HHHHHHHHhhc-----cceEEEecCCCccccCC
Confidence 55777777776 46899999999987654
No 142
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.41 E-value=5e-06 Score=65.36 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCC----CCCCchh-hHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHH
Q 042897 24 RFLTSLVVKANIVAITIDYRLAPE----HHLPIAH-EDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIA 98 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~~~~----~~~~~~~-~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a 98 (208)
..+.+.+.++|..|..++++.... ..++.-+ +.+..+++.+++. ...++|.++|+|+||+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd~~~~~~~~edYi~e~l~~aid~v~~i-------------tg~~~InliGyCvGGtl~ 195 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPDASLAAKNLEDYILEGLSEAIDTVKDI-------------TGQKDINLIGYCVGGTLL 195 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCchHhhhhccHHHHHHHHHHHHHHHHHHH-------------hCccccceeeEecchHHH
Confidence 334666778899999999875322 1223323 5667777877775 445899999999999999
Q ss_pred HHHHHHH
Q 042897 99 HYVAVQL 105 (208)
Q Consensus 99 ~~~~~~~ 105 (208)
+.++...
T Consensus 196 ~~ala~~ 202 (445)
T COG3243 196 AAALALM 202 (445)
T ss_pred HHHHHhh
Confidence 8877655
No 143
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.37 E-value=1.1e-05 Score=59.96 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCC-CCccCCCC--CcccccCCCCcEEEEeeCCCC---Ch--
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEE-DPILNPAL--DPNLKMMRSDRVLVCVAEKDG---LR-- 152 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~p~li~~G~~D~---~~-- 152 (208)
++.++..|+|||+||.+++.....+...+..+.......++ +....... ....+..+. -+++-.|+.|. ..
T Consensus 134 ~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~~~l~~~~~~~~~~~~~i-~l~iG~~e~~~~~~~~~~ 212 (264)
T COG2819 134 TNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNEAILREIESLKLLKTKRI-CLYIGSGELDSSRSIRMA 212 (264)
T ss_pred cCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCHHHhccccccccCCCcce-EEEecccccCcchhhhhh
Confidence 78899999999999999999998886666555443322221 11111100 011122221 34444444443 22
Q ss_pred ---hhHHHHHHHHHh-cCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 153 ---NRGVYYYETLKK-SEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 153 ---~~~~~~~~~l~~-~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
....+..+.+++ .|. .+.+..+|+.+|+-.. ...+...+.|+.
T Consensus 213 ~~~~~~~~~~~~~~~~~g~--~~~f~~~~~~~H~~~~--------~~~~~~al~~l~ 259 (264)
T COG2819 213 ENKQEAAELSSLLEKRTGA--RLVFQEEPLEHHGSVI--------HASLPSALRFLD 259 (264)
T ss_pred hHHHHHHHHHHHHhhccCC--ceEecccccccccchH--------HHHHHHHHHhhh
Confidence 234555555665 665 8888889988996433 244556666654
No 144
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.36 E-value=2.8e-05 Score=60.22 Aligned_cols=86 Identities=24% Similarity=0.360 Sum_probs=55.0
Q ss_pred CCEEEEEcCCccccCCCCCchhHHH-HHHHHHhCCcEEEEecCCCCCCCC--------C----------CchhhHHHHHH
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRF-LTSLVVKANIVAITIDYRLAPEHH--------L----------PIAHEDSWAGL 61 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~-~~~~~~~~g~~v~~~d~~~~~~~~--------~----------~~~~~d~~~~~ 61 (208)
+|++|.+.|.|=. +.- ..... ...++.+ |+..+.+..+...... . ...+.++...+
T Consensus 92 rp~~IhLagTGDh-~f~---rR~~l~a~pLl~~-gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll 166 (348)
T PF09752_consen 92 RPVCIHLAGTGDH-GFW---RRRRLMARPLLKE-GIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALL 166 (348)
T ss_pred CceEEEecCCCcc-chh---hhhhhhhhHHHHc-CcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHH
Confidence 5899999995421 110 01233 2445555 9998888744332110 0 12346777788
Q ss_pred HHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 62 EWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 62 ~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.|+.++. ..+++|.|.||||++|...++..
T Consensus 167 ~Wl~~~G--------------~~~~g~~G~SmGG~~A~laa~~~ 196 (348)
T PF09752_consen 167 HWLEREG--------------YGPLGLTGISMGGHMAALAASNW 196 (348)
T ss_pred HHHHhcC--------------CCceEEEEechhHhhHHhhhhcC
Confidence 8988852 36999999999999998777755
No 145
>COG3150 Predicted esterase [General function prediction only]
Probab=98.34 E-value=2.9e-05 Score=53.50 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=58.2
Q ss_pred CceEEeecChhHHHHHHHHHHHH-------------HHHhhhccCCCCC-CCCCc-cCC-----CCCcccccCCCCcEEE
Q 042897 84 GRVFLAGESAGANIAHYVAVQLD-------------EMYAYMCPTSAGF-EEDPI-LNP-----ALDPNLKMMRSDRVLV 143 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~~-------------~~~~~~~~~~~~~-~~~~~-~~~-----~~~~~~~~~~~~p~li 143 (208)
+.+.|+|-|.||+.|-.++.++. +....+++...-. .-..+ +.+ .-...+..+..|..++
T Consensus 59 ~~p~ivGssLGGY~At~l~~~~Girav~~NPav~P~e~l~gylg~~en~ytg~~y~le~~hI~~l~~~~~~~l~~p~~~~ 138 (191)
T COG3150 59 ESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAVRPYELLTGYLGRPENPYTGQEYVLESRHIATLCVLQFRELNRPRCLV 138 (191)
T ss_pred CCceEEeecchHHHHHHHHHHhCChhhhcCCCcCchhhhhhhcCCCCCCCCcceEEeehhhHHHHHHhhccccCCCcEEE
Confidence 45999999999999999998771 1111111110000 00011 111 0011223333335666
Q ss_pred EeeCC-CCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 144 CVAEK-DGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 144 ~~G~~-D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
+.... |++.|- ++..+.+. .+.....+|++|.|..+. ..++.|+.|..
T Consensus 139 lL~qtgDEvLDy-r~a~a~y~------~~~~~V~dgg~H~F~~f~-------~~l~~i~aF~g 187 (191)
T COG3150 139 LLSQTGDEVLDY-RQAVAYYH------PCYEIVWDGGDHKFKGFS-------RHLQRIKAFKG 187 (191)
T ss_pred eecccccHHHHH-HHHHHHhh------hhhheeecCCCccccchH-------HhHHHHHHHhc
Confidence 65555 877752 22333333 234455678999988753 56888988864
No 146
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.33 E-value=9.3e-07 Score=64.70 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=43.8
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcE---EEEecCCCCCCCCCCc-------hhhHHHHHHHHHHhhccCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIV---AITIDYRLAPEHHLPI-------AHEDSWAGLEWVASHSYGQG 72 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~---v~~~d~~~~~~~~~~~-------~~~d~~~~~~~l~~~~~~~~ 72 (208)
.|||+||.+..... .| ..+...++++||. +..++|.......... ...++.++++.+++.
T Consensus 3 PVVlVHG~~~~~~~----~w-~~~~~~l~~~GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~----- 72 (219)
T PF01674_consen 3 PVVLVHGTGGNAYS----NW-STLAPYLKAAGYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAY----- 72 (219)
T ss_dssp -EEEE--TTTTTCG----GC-CHHHHHHHHTT--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHH-----
T ss_pred CEEEECCCCcchhh----CH-HHHHHHHHHcCCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHh-----
Confidence 47889995532222 23 3345566777999 7999996544322111 123455555555543
Q ss_pred CCCcccCCCCCCceEEeecChhHHHHHHHHH
Q 042897 73 PEPLLNRHADFGRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 73 ~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~ 103 (208)
... +|=|+||||||.++-.+..
T Consensus 73 --------TGa-kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 73 --------TGA-KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp --------HT---EEEEEETCHHHHHHHHHH
T ss_pred --------hCC-EEEEEEcCCcCHHHHHHHH
Confidence 445 9999999999999877764
No 147
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.33 E-value=1.1e-05 Score=64.19 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=47.9
Q ss_pred ccccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 132 NLKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 132 ~~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+++.+...|+|.+.|++|.+++ ++..+.+.+...+. .+.+.+..+++||. ..+.. ....++++-.|.+||.++
T Consensus 332 dl~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s-~~k~~~~~~~~GH~-Gvf~G-~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 332 DPGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPE-DMKRHHLQPGVGHY-GVFSG-SRFREEIYPLVREFIRRN 406 (406)
T ss_pred cHHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCCh-hhceEeecCCCCeE-EEeeC-hhhhhhhchHHHHHHHhC
Confidence 3455551299999999999985 55555555422221 15567778789994 44332 234467888999999875
No 148
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.29 E-value=2.9e-05 Score=58.28 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHH--H-H--Hhhhc---cCCCCCC-C--
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLD--E-M--YAYMC---PTSAGFE-E-- 121 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~--~-~--~~~~~---~~~~~~~-~-- 121 (208)
..+.+..++.+|++. ....++.++||||||..++.++..+. . + ..-++ ....+.. .
T Consensus 85 qa~wl~~vl~~L~~~-------------Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~ 151 (255)
T PF06028_consen 85 QAKWLKKVLKYLKKK-------------YHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND 151 (255)
T ss_dssp HHHHHHHHHHHHHHC-------------C--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC
T ss_pred HHHHHHHHHHHHHHh-------------cCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc
Confidence 445677788888775 66789999999999999998887751 0 0 00000 0001110 0
Q ss_pred CCcc------CCCC--------Ccc-cccCCC-CcEEEEeeC------CCCChh--hHHHHHHHHHhcCCCcceEEEEeC
Q 042897 122 DPIL------NPAL--------DPN-LKMMRS-DRVLVCVAE------KDGLRN--RGVYYYETLKKSEWHGKAEFYQTL 177 (208)
Q Consensus 122 ~~~~------~~~~--------~~~-~~~~~~-~p~li~~G~------~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~ 177 (208)
.+.. .|.. ... ...+|. ..+|.+.|. .|..++ .+..+.-.++... +..+-.++.
T Consensus 152 ~~~~~~~~~~gp~~~~~~y~~l~~~~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~--~~Y~e~~v~ 229 (255)
T PF06028_consen 152 DQNQNDLNKNGPKSMTPMYQDLLKNRRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRA--KSYQEKTVT 229 (255)
T ss_dssp -TTTT-CSTT-BSS--HHHHHHHHTHGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTS--SEEEEEEEE
T ss_pred cchhhhhcccCCcccCHHHHHHHHHHHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhccc--CceEEEEEE
Confidence 0000 0100 011 122321 269999998 466665 3344444444432 266666665
Q ss_pred C--CCccccccCCCCCchHHHHHHHHHHHH
Q 042897 178 G--EDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 178 ~--~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
| +.|+-.. +..++.+.|.+||-
T Consensus 230 G~~a~HS~Lh------eN~~V~~~I~~FLw 253 (255)
T PF06028_consen 230 GKDAQHSQLH------ENPQVDKLIIQFLW 253 (255)
T ss_dssp SGGGSCCGGG------CCHHHHHHHHHHHC
T ss_pred CCCCccccCC------CCHHHHHHHHHHhc
Confidence 4 5785333 33688888999984
No 149
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.29 E-value=9.3e-06 Score=61.63 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=62.3
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHh--CCcEEEEecCCCCCCCC----------CCchhhHHHHHHHHHHhhc
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVK--ANIVAITIDYRLAPEHH----------LPIAHEDSWAGLEWVASHS 68 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~--~g~~v~~~d~~~~~~~~----------~~~~~~d~~~~~~~l~~~~ 68 (208)
.++++|+.|..+..+ .|..++..+... ..+.|+.+.+.+..... ....-+.++..++++.+..
T Consensus 2 ~~li~~IPGNPGlv~-----fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE-----FYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCChHH-----HHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 368999999665544 356676666655 37889999987643221 1222344555667666654
Q ss_pred cCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 69 YGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 69 ~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.... ....+++|+|||.|+++++.++.+.
T Consensus 77 ~~~~--------~~~~~liLiGHSIGayi~levl~r~ 105 (266)
T PF10230_consen 77 PQKN--------KPNVKLILIGHSIGAYIALEVLKRL 105 (266)
T ss_pred hhhc--------CCCCcEEEEeCcHHHHHHHHHHHhc
Confidence 3210 1458999999999999999999887
No 150
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=98.26 E-value=1.6e-05 Score=58.24 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=82.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCC----C----CCCCCchhhHHHHHHHHHHhhccCCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLA----P----EHHLPIAHEDSWAGLEWVASHSYGQGP 73 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~----~----~~~~~~~~~d~~~~~~~l~~~~~~~~~ 73 (208)
|+||...|-+-. +....-++..++.+||.|+.+|.-.. . +..+.....|+..+++||...
T Consensus 31 ~tiliA~Gf~rr------mdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~------ 98 (294)
T PF02273_consen 31 NTILIAPGFARR------MDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINEFTMSIGKASLLTVIDWLATR------ 98 (294)
T ss_dssp -EEEEE-TT-GG------GGGGHHHHHHHHTTT--EEEE---B-------------HHHHHHHHHHHHHHHHHT------
T ss_pred CeEEEecchhHH------HHHHHHHHHHHhhCCeEEEeccccccccCCCCChhhcchHHhHHHHHHHHHHHHhc------
Confidence 678888874421 12345567888889999999995421 1 122334567899999999963
Q ss_pred CCcccCCCCCCceEEeecChhHHHHHHHHHHHH--------------HHHhh-----hccCC-CCCCCCC----------
Q 042897 74 EPLLNRHADFGRVFLAGESAGANIAHYVAVQLD--------------EMYAY-----MCPTS-AGFEEDP---------- 123 (208)
Q Consensus 74 ~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~--------------~~~~~-----~~~~~-~~~~~~~---------- 123 (208)
...+++|+--|.-|-+|+..+.+.+ ..... ++... .+...+.
T Consensus 99 --------g~~~~GLIAaSLSaRIAy~Va~~i~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~lp~dldfeGh~l~~~ 170 (294)
T PF02273_consen 99 --------GIRRIGLIAASLSARIAYEVAADINLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQLPEDLDFEGHNLGAE 170 (294)
T ss_dssp --------T---EEEEEETTHHHHHHHHTTTS--SEEEEES--S-HHHHHHHHHSS-GGGS-GGG--SEEEETTEEEEHH
T ss_pred --------CCCcchhhhhhhhHHHHHHHhhccCcceEEEEeeeeeHHHHHHHHhccchhhcchhhCCCcccccccccchH
Confidence 3578999999999999999988650 00000 00000 0000000
Q ss_pred ---------ccCC--CCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 124 ---------ILNP--ALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 124 ---------~~~~--~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
-..+ +....++.+.. |++.+++++|.-+++.+ ..+.+...+. ..++++..+|..|...
T Consensus 171 vFv~dc~e~~w~~l~ST~~~~k~l~i-P~iaF~A~~D~WV~q~e-V~~~~~~~~s-~~~klysl~Gs~HdL~ 239 (294)
T PF02273_consen 171 VFVTDCFEHGWDDLDSTINDMKRLSI-PFIAFTANDDDWVKQSE-VEELLDNINS-NKCKLYSLPGSSHDLG 239 (294)
T ss_dssp HHHHHHHHTT-SSHHHHHHHHTT--S--EEEEEETT-TTS-HHH-HHHHHTT-TT---EEEEEETT-SS-TT
T ss_pred HHHHHHHHcCCccchhHHHHHhhCCC-CEEEEEeCCCccccHHH-HHHHHHhcCC-CceeEEEecCccchhh
Confidence 0000 11234566666 99999999999886443 3333433221 2889999999999643
No 151
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.25 E-value=6.6e-06 Score=60.85 Aligned_cols=85 Identities=22% Similarity=0.175 Sum_probs=52.7
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCC-CCCCCchhhHH-HHHHHHHHhhccCCCCCCcccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAP-EHHLPIAHEDS-WAGLEWVASHSYGQGPEPLLNR 79 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~-~~~~~~~~~d~-~~~~~~l~~~~~~~~~~~~~~~ 79 (208)
+.|+++|++|+... .|.. +.+.+....+.|+.++++... +......++++ ...++.|+..
T Consensus 1 ~~lf~~p~~gG~~~-----~y~~-la~~l~~~~~~v~~i~~~~~~~~~~~~~si~~la~~y~~~I~~~------------ 62 (229)
T PF00975_consen 1 RPLFCFPPAGGSAS-----SYRP-LARALPDDVIGVYGIEYPGRGDDEPPPDSIEELASRYAEAIRAR------------ 62 (229)
T ss_dssp -EEEEESSTTCSGG-----GGHH-HHHHHTTTEEEEEEECSTTSCTTSHEESSHHHHHHHHHHHHHHH------------
T ss_pred CeEEEEcCCccCHH-----HHHH-HHHhCCCCeEEEEEEecCCCCCCCCCCCCHHHHHHHHHHHhhhh------------
Confidence 46889999775332 2333 344444435889999888653 22222333332 2334444443
Q ss_pred CCCCCceEEeecChhHHHHHHHHHHH
Q 042897 80 HADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 80 ~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....++.|+|||+||.+|+.+|.+.
T Consensus 63 -~~~gp~~L~G~S~Gg~lA~E~A~~L 87 (229)
T PF00975_consen 63 -QPEGPYVLAGWSFGGILAFEMARQL 87 (229)
T ss_dssp -TSSSSEEEEEETHHHHHHHHHHHHH
T ss_pred -CCCCCeeehccCccHHHHHHHHHHH
Confidence 2224899999999999999999887
No 152
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=98.25 E-value=2.5e-05 Score=60.49 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=99.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCC-----CC-------------CCCC------------
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLA-----PE-------------HHLP------------ 51 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~-----~~-------------~~~~------------ 51 (208)
-+||++||-|. +.+.......+++.+.+.|+.++++....- +. ....
T Consensus 88 G~vIilp~~g~---~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (310)
T PF12048_consen 88 GAVIILPDWGE---HPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQ 164 (310)
T ss_pred eEEEEecCCCC---CCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCcccccc
Confidence 37899999553 333334577788889999999998765430 00 0000
Q ss_pred ----------chhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHH-HhhhccCCCCCC
Q 042897 52 ----------IAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEM-YAYMCPTSAGFE 120 (208)
Q Consensus 52 ----------~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~-~~~~~~~~~~~~ 120 (208)
....-+.+++.++.+.. ..+|+|+||+.|+++++.+..+.... ...++......
T Consensus 165 ~~~~~~~~~~~~~ari~Aa~~~~~~~~--------------~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~- 229 (310)
T PF12048_consen 165 EAEAREAYEERLFARIEAAIAFAQQQG--------------GKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYW- 229 (310)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHhcC--------------CceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCC-
Confidence 11223455566666542 35699999999999999988765211 11111111111
Q ss_pred CCCccCCCCCcccccCCCCcEEEEeeCCCCChhhHHHHHHH-HHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHH
Q 042897 121 EDPILNPALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYET-LKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQK 199 (208)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~ 199 (208)
.....++.....+..+.. |+|=++...........+..+. .+... +...+-....+..|.+.. ....+.++
T Consensus 230 p~~~~n~~l~~~la~l~i-PvLDi~~~~~~~~~~~a~~R~~~a~r~~-~~~YrQ~~L~~~~~~~~~------~~~~l~~r 301 (310)
T PF12048_consen 230 PQPDRNPALAEQLAQLKI-PVLDIYSADNPASQQTAKQRKQAAKRNK-KPDYRQIQLPGLPDNPSG------WQEQLLRR 301 (310)
T ss_pred CcchhhhhHHHHhhccCC-CEEEEecCCChHHHHHHHHHHHHHHhcc-CCCceeEecCCCCCChhh------HHHHHHHH
Confidence 111122223345566666 9998888873333222222222 22221 114455555665553222 12348999
Q ss_pred HHHHHHhc
Q 042897 200 LVNFIKST 207 (208)
Q Consensus 200 i~~fl~~~ 207 (208)
|..|++++
T Consensus 302 IrGWL~~~ 309 (310)
T PF12048_consen 302 IRGWLKRH 309 (310)
T ss_pred HHHHHHhh
Confidence 99999976
No 153
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=98.19 E-value=8.8e-05 Score=54.73 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=91.5
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchh----hHHHHHHHHHHhhccCCCCCCccc
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAH----EDSWAGLEWVASHSYGQGPEPLLN 78 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~----~d~~~~~~~l~~~~~~~~~~~~~~ 78 (208)
.||.+-||.+....+. .+|...+..++ ++||.|++.-|...-++ .... +....+++.|.+... ..
T Consensus 18 gvihFiGGaf~ga~P~-itYr~lLe~La-~~Gy~ViAtPy~~tfDH--~~~A~~~~~~f~~~~~~L~~~~~-~~------ 86 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQ-ITYRYLLERLA-DRGYAVIATPYVVTFDH--QAIAREVWERFERCLRALQKRGG-LD------ 86 (250)
T ss_pred EEEEEcCcceeccCcH-HHHHHHHHHHH-hCCcEEEEEecCCCCcH--HHHHHHHHHHHHHHHHHHHHhcC-CC------
Confidence 4788889988765554 35656556665 56999999999754322 2222 233344444444321 00
Q ss_pred CCCCCCceEEeecChhHHHHHHHHHHHHHHHh-------------hhccCCCCC----CCCCccCC----CCCcccccCC
Q 042897 79 RHADFGRVFLAGESAGANIAHYVAVQLDEMYA-------------YMCPTSAGF----EEDPILNP----ALDPNLKMMR 137 (208)
Q Consensus 79 ~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~-------------~~~~~~~~~----~~~~~~~~----~~~~~~~~~~ 137 (208)
...-+++=+|||+|.-+-+.+....+...+ ..+|..... ..+..-+| ....+....+
T Consensus 87 --~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFNN~~a~~aIP~~~~l~~~l~~EF~PsP~ET~~li~~~Y~~~ 164 (250)
T PF07082_consen 87 --PAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFNNFPADEAIPLLEQLAPALRLEFTPSPEETRRLIRESYQVR 164 (250)
T ss_pred --cccCCeeeeecccchHHHHHHhhhccCcccceEEEecCChHHHhhCchHhhhccccccCccCCHHHHHHHHHHhcCCc
Confidence 112367889999999998877754411111 111110000 01111111 0011122334
Q ss_pred CCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 138 SDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 138 ~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
..+++-=++|.+ |++..+.+.|+.... ..++....+ +.|.-+
T Consensus 165 --rnLLIkF~~D~i-Dqt~~L~~~L~~r~~-~~~~~~~L~-G~HLTP 206 (250)
T PF07082_consen 165 --RNLLIKFNDDDI-DQTDELEQILQQRFP-DMVSIQTLP-GNHLTP 206 (250)
T ss_pred --cceEEEecCCCc-cchHHHHHHHhhhcc-ccceEEeCC-CCCCCc
Confidence 688888888877 788888888877642 356777787 489644
No 154
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.09 E-value=1e-05 Score=58.26 Aligned_cols=102 Identities=21% Similarity=0.230 Sum_probs=58.8
Q ss_pred EEeecChhHHHHHHHHHHHHHH--------HhhhccCCCCCCCCCccCCCC-CcccccCCCCcEEEEeeCCCCChh--hH
Q 042897 87 FLAGESAGANIAHYVAVQLDEM--------YAYMCPTSAGFEEDPILNPAL-DPNLKMMRSDRVLVCVAEKDGLRN--RG 155 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~li~~G~~D~~~~--~~ 155 (208)
+|+|+|+|+.++..++.....- ++..+ ..++. ..+ -.+.. ......+.. |.|-+.|+.|.+++ .+
T Consensus 107 GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v-~~SGf-~~~-~~~~~~~~~~~~i~~-PSLHi~G~~D~iv~~~~s 182 (230)
T KOG2551|consen 107 GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAV-FISGF-KFP-SKKLDESAYKRPLST-PSLHIFGETDTIVPSERS 182 (230)
T ss_pred cccccchhHHHHHHhhcccccCCcccCCCCeEEEE-EEecC-CCC-cchhhhhhhccCCCC-CeeEEecccceeecchHH
Confidence 6999999999999888621000 00000 01111 000 00101 112234555 99999999999886 45
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 156 VYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
..+++..++. +++..| +||..+.. ....+.|.+||.+
T Consensus 183 ~~L~~~~~~a------~vl~Hp-ggH~VP~~-------~~~~~~i~~fi~~ 219 (230)
T KOG2551|consen 183 EQLAESFKDA------TVLEHP-GGHIVPNK-------AKYKEKIADFIQS 219 (230)
T ss_pred HHHHHhcCCC------eEEecC-CCccCCCc-------hHHHHHHHHHHHH
Confidence 7777766543 677777 49965542 3566777777654
No 155
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.08 E-value=0.00026 Score=52.25 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+..++.+|+++ ++..++-++||||||.-....+..+
T Consensus 118 ~s~wlk~~msyL~~~-------------Y~i~k~n~VGhSmGg~~~~~Y~~~y 157 (288)
T COG4814 118 QSKWLKKAMSYLQKH-------------YNIPKFNAVGHSMGGLGLTYYMIDY 157 (288)
T ss_pred HHHHHHHHHHHHHHh-------------cCCceeeeeeeccccHHHHHHHHHh
Confidence 345677888999886 7788999999999999999988877
No 156
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.02 E-value=0.00095 Score=46.63 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=55.6
Q ss_pred CCceEEeecChhHHHHHHHHHHHHHHHhhhccC-CCCCCCCCccCC-----CCCcccccCCCCcEEEEeeCCCCChh--h
Q 042897 83 FGRVFLAGESAGANIAHYVAVQLDEMYAYMCPT-SAGFEEDPILNP-----ALDPNLKMMRSDRVLVCVAEKDGLRN--R 154 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~p~li~~G~~D~~~~--~ 154 (208)
...++|++||.|...++.++.+......+.+-- .... ..+...+ ........++. |.+++...+|+.++ .
T Consensus 58 ~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~-~~~~~~~~~~~tf~~~p~~~lpf-ps~vvaSrnDp~~~~~~ 135 (181)
T COG3545 58 EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDV-SRPEIRPKHLMTFDPIPREPLPF-PSVVVASRNDPYVSYEH 135 (181)
T ss_pred CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCc-cccccchhhccccCCCccccCCC-ceeEEEecCCCCCCHHH
Confidence 356999999999999999998775433332211 0000 0011111 11223344555 99999999999885 4
Q ss_pred HHHHHHHHHhcCCCcceEEEEeCCCCccc
Q 042897 155 GVYYYETLKKSEWHGKAEFYQTLGEDHCF 183 (208)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~H~~ 183 (208)
++.+.+...+ .++...++||..
T Consensus 136 a~~~a~~wgs-------~lv~~g~~GHiN 157 (181)
T COG3545 136 AEDLANAWGS-------ALVDVGEGGHIN 157 (181)
T ss_pred HHHHHHhccH-------hheecccccccc
Confidence 4555444433 677778889954
No 157
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00014 Score=53.42 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=55.3
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCC--cEEEEecC---CCCCCC-------C---CCchhhHHHHHHHHHH
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKAN--IVAITIDY---RLAPEH-------H---LPIAHEDSWAGLEWVA 65 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g--~~v~~~d~---~~~~~~-------~---~~~~~~d~~~~~~~l~ 65 (208)
.|.++++.|..+..|. |..+...+....+ ..++.+.. .+.|.+ . .-...+.+.-=+++++
T Consensus 29 ~~li~~IpGNPG~~gF-----Y~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik 103 (301)
T KOG3975|consen 29 KPLIVWIPGNPGLLGF-----YTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIK 103 (301)
T ss_pred ceEEEEecCCCCchhH-----HHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHH
Confidence 3678999996655543 4566666666555 33555443 233311 1 0111234555678888
Q ss_pred hhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 66 SHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+.. -...+++++|||-|+++.+++.-..
T Consensus 104 ~~~------------Pk~~ki~iiGHSiGaYm~Lqil~~~ 131 (301)
T KOG3975|consen 104 EYV------------PKDRKIYIIGHSIGAYMVLQILPSI 131 (301)
T ss_pred HhC------------CCCCEEEEEecchhHHHHHHHhhhc
Confidence 765 3447999999999999999998755
No 158
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.01 E-value=2.6e-05 Score=57.37 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 58 WAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...+++|.+...... ....+|.++|||+||.++-.+....
T Consensus 60 ~rL~~eI~~~~~~~~--------~~~~~IsfIgHSLGGli~r~al~~~ 99 (217)
T PF05057_consen 60 ERLAEEILEHIKDYE--------SKIRKISFIGHSLGGLIARYALGLL 99 (217)
T ss_pred HHHHHHHHHhccccc--------cccccceEEEecccHHHHHHHHHHh
Confidence 344555555543322 2246899999999999997666543
No 159
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.98 E-value=0.00028 Score=51.13 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCC----CCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHH
Q 042897 22 FKRFLTSLVVKANIVAITIDYRLAP----EHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANI 97 (208)
Q Consensus 22 ~~~~~~~~~~~~g~~v~~~d~~~~~----~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~ 97 (208)
+...+...+-+.+|..+.+..+-+. ........+|+.+++++|.-. -...+|+|+|||.|..-
T Consensus 54 y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~-------------~fSt~vVL~GhSTGcQd 120 (299)
T KOG4840|consen 54 YTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLC-------------GFSTDVVLVGHSTGCQD 120 (299)
T ss_pred cHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhcc-------------CcccceEEEecCccchH
Confidence 4666777888889999999876543 345667788999999977653 12358999999999998
Q ss_pred HHHHHHH
Q 042897 98 AHYVAVQ 104 (208)
Q Consensus 98 a~~~~~~ 104 (208)
.+.+++.
T Consensus 121 i~yYlTn 127 (299)
T KOG4840|consen 121 IMYYLTN 127 (299)
T ss_pred HHHHHHh
Confidence 8877743
No 160
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.77 E-value=0.0025 Score=51.91 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=44.2
Q ss_pred HhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 31 VKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 31 ~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.|..|+.+.+.-.| .-.+.++|+..+.....+...+.. -+..|.+|+|-|+||..++.+|+.+
T Consensus 97 L~~GHPvYFV~F~p~P--~pgQTl~DV~~ae~~Fv~~V~~~h--------p~~~kp~liGnCQgGWa~~mlAA~~ 161 (581)
T PF11339_consen 97 LRAGHPVYFVGFFPEP--EPGQTLEDVMRAEAAFVEEVAERH--------PDAPKPNLIGNCQGGWAAMMLAALR 161 (581)
T ss_pred HHcCCCeEEEEecCCC--CCCCcHHHHHHHHHHHHHHHHHhC--------CCCCCceEEeccHHHHHHHHHHhcC
Confidence 3449999988876443 233567787766544433332221 2334999999999999999999877
No 161
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.69 E-value=0.00032 Score=52.66 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=50.3
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-CCCchhhH-HHHHHHHHHhhccCCCCCCcccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-HLPIAHED-SWAGLEWVASHSYGQGPEPLLNR 79 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-~~~~~~~d-~~~~~~~l~~~~~~~~~~~~~~~ 79 (208)
|+|+.+|+.++.... |.. +...+... ..|+.++++..... .....++| +...++-|+..
T Consensus 1 ~pLF~fhp~~G~~~~-----~~~-L~~~l~~~-~~v~~l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~------------ 61 (257)
T COG3319 1 PPLFCFHPAGGSVLA-----YAP-LAAALGPL-LPVYGLQAPGYGAGEQPFASLDDMAAAYVAAIRRV------------ 61 (257)
T ss_pred CCEEEEcCCCCcHHH-----HHH-HHHHhccC-ceeeccccCcccccccccCCHHHHHHHHHHHHHHh------------
Confidence 678999995533211 122 23333332 77888888765321 22223333 33334444443
Q ss_pred CCCCCceEEeecChhHHHHHHHHHHH
Q 042897 80 HADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 80 ~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-....+.|.|+|.||.+|..+|.+.
T Consensus 62 -QP~GPy~L~G~S~GG~vA~evA~qL 86 (257)
T COG3319 62 -QPEGPYVLLGWSLGGAVAFEVAAQL 86 (257)
T ss_pred -CCCCCEEEEeeccccHHHHHHHHHH
Confidence 2236899999999999999999887
No 162
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=97.69 E-value=0.0053 Score=48.79 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=34.8
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEe-----------CCCCccccc
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQT-----------LGEDHCFHM 185 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~-----------~~~~H~~~~ 185 (208)
-.+..|+..|.+.| .-+++++.+++.|. +++++.+ .+..|+..+
T Consensus 295 ~yvsYHs~~D~~~p~~~K~~l~~~l~~lgf--da~l~lIkdes~iDGkfIKnl~HGmgi 351 (403)
T PF11144_consen 295 IYVSYHSIKDDLAPAEDKEELYEILKNLGF--DATLHLIKDESEIDGKFIKNLEHGMGI 351 (403)
T ss_pred EEEEEeccCCCCCCHHHHHHHHHHHHHcCC--CeEEEEecChhhccchheeccccCCCC
Confidence 46678999999875 55789999999998 9999887 456676554
No 163
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00072 Score=53.21 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=85.1
Q ss_pred EEEEcC-CccccCCCCCchhHHHHHHHHHhCCcEEEEecC-CCC-CCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCC
Q 042897 4 LIHYHG-GGFCLGSALDMPFKRFLTSLVVKANIVAITIDY-RLA-PEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 4 vi~~HG-g~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~-~~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~ 80 (208)
-||+.| |||.. ....+...+.++|+.|+-+|- |+. .+..-.+...|....+++-...
T Consensus 263 av~~SGDGGWr~-------lDk~v~~~l~~~gvpVvGvdsLRYfW~~rtPe~~a~Dl~r~i~~y~~~------------- 322 (456)
T COG3946 263 AVFYSGDGGWRD-------LDKEVAEALQKQGVPVVGVDSLRYFWSERTPEQIAADLSRLIRFYARR------------- 322 (456)
T ss_pred EEEEecCCchhh-------hhHHHHHHHHHCCCceeeeehhhhhhccCCHHHHHHHHHHHHHHHHHh-------------
Confidence 366667 66653 235567778889999999983 332 2334445667888888877664
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH----HHHH--hhhccCCCCCC----CCCccCC------CCCcccccCCCCcEEEE
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL----DEMY--AYMCPTSAGFE----EDPILNP------ALDPNLKMMRSDRVLVC 144 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~----~~~~--~~~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~p~li~ 144 (208)
-...++.|+|+|.|+-+--..-.+. +... ...+......+ ...++.. ..-.++..++...+.-+
T Consensus 323 w~~~~~~liGySfGADvlP~~~n~L~~~~r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~~g~~~~~~~~~~l~~~~v~Ci 402 (456)
T COG3946 323 WGAKRVLLIGYSFGADVLPFAYNRLPPATRQRVRMVSLLGLGRTADFEISVEGWLGMAGEGAGDVVPDIAKLPLARVQCI 402 (456)
T ss_pred hCcceEEEEeecccchhhHHHHHhCCHHHHHHHHHHHHHhccccceEEEEEeeeeccCCcCCCCcchhhhhCCcceeEEE
Confidence 3357999999999998864332222 1111 11111100000 0111111 12334555654467778
Q ss_pred eeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccc
Q 042897 145 VAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHM 185 (208)
Q Consensus 145 ~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~ 185 (208)
+|.+|.-.. .-.++.. .++++..||+.| |.-
T Consensus 403 YG~~e~d~~-----Cp~l~~~----~~~~v~lpGgHH-Fd~ 433 (456)
T COG3946 403 YGQEEKDTA-----CPSLKAK----GVDTVKLPGGHH-FDG 433 (456)
T ss_pred ecCcccccc-----CCcchhh----cceeEecCCCcc-cCc
Confidence 888764221 2235556 458888998555 543
No 164
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.66 E-value=0.00024 Score=52.91 Aligned_cols=86 Identities=16% Similarity=0.076 Sum_probs=47.9
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCc--EEEEecCCCCCCC-CCCchh-------hHHHHHHHHHHhhccCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANI--VAITIDYRLAPEH-HLPIAH-------EDSWAGLEWVASHSYGQ 71 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~--~v~~~d~~~~~~~-~~~~~~-------~d~~~~~~~l~~~~~~~ 71 (208)
.++||+||..-... + -....+.+....++ .++.+.++-.... .+.... ......++.|.+.
T Consensus 19 ~vlvfVHGyn~~f~--~---a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~---- 89 (233)
T PF05990_consen 19 EVLVFVHGYNNSFE--D---ALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARA---- 89 (233)
T ss_pred eEEEEEeCCCCCHH--H---HHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhc----
Confidence 47999999442211 1 12334455555555 4666666543211 122111 1222233333322
Q ss_pred CCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 72 GPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 72 ~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+|.|++||||+.+.+.++...
T Consensus 90 ---------~~~~~I~ilaHSMG~rv~~~aL~~l 114 (233)
T PF05990_consen 90 ---------PGIKRIHILAHSMGNRVLLEALRQL 114 (233)
T ss_pred ---------cCCceEEEEEeCchHHHHHHHHHHH
Confidence 2458999999999999999887765
No 165
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.0003 Score=54.55 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=54.1
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-----CCC-----chhhHHHHHHHHHHhhccCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-----HLP-----IAHEDSWAGLEWVASHSYGQ 71 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-----~~~-----~~~~d~~~~~~~l~~~~~~~ 71 (208)
-+++|+||..... .+. .....+++...|+..+.+=+...... .+. ....+++..+++|....
T Consensus 117 ~vlvFvHGfNntf--~da---v~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~--- 188 (377)
T COG4782 117 TVLVFVHGFNNTF--EDA---VYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDK--- 188 (377)
T ss_pred eEEEEEcccCCch--hHH---HHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCC---
Confidence 3789999944222 111 33346777777766544433322211 111 23345667788887752
Q ss_pred CCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 72 GPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 72 ~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...+|.|+.||||..+++.++.+.
T Consensus 189 ----------~~~~I~ilAHSMGtwl~~e~LrQL 212 (377)
T COG4782 189 ----------PVKRIYLLAHSMGTWLLMEALRQL 212 (377)
T ss_pred ----------CCceEEEEEecchHHHHHHHHHHH
Confidence 357999999999999999988765
No 166
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.00022 Score=60.28 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=42.0
Q ss_pred cEEEEecCCCC----CCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 35 IVAITIDYRLA----PEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 35 ~~v~~~d~~~~----~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+...++|+.-- .+.....+.+-+-+|++++.+..+... +-+.-.|..|+|+||||||.+|..+++..
T Consensus 133 ~DFFaVDFnEe~tAm~G~~l~dQtEYV~dAIk~ILslYr~~~----e~~~p~P~sVILVGHSMGGiVAra~~tlk 203 (973)
T KOG3724|consen 133 FDFFAVDFNEEFTAMHGHILLDQTEYVNDAIKYILSLYRGER----EYASPLPHSVILVGHSMGGIVARATLTLK 203 (973)
T ss_pred cceEEEcccchhhhhccHhHHHHHHHHHHHHHHHHHHhhccc----ccCCCCCceEEEEeccchhHHHHHHHhhh
Confidence 44555555421 122334556677888888887755411 00013367899999999999998877654
No 167
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.58 E-value=0.0012 Score=54.54 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=52.5
Q ss_pred HHHhCCcEEEEecCCCCCC--CCC----CchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 29 LVVKANIVAITIDYRLAPE--HHL----PIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 29 ~~~~~g~~v~~~d~~~~~~--~~~----~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
.++..||.|+..|-|+... ..+ .+..+|-.+.|+||.+++- .-.+|+.+|.|++|...+.+|
T Consensus 75 ~~aa~GYavV~qDvRG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpW------------sNG~Vgm~G~SY~g~tq~~~A 142 (563)
T COG2936 75 WFAAQGYAVVNQDVRGRGGSEGVFDPESSREAEDGYDTIEWLAKQPW------------SNGNVGMLGLSYLGFTQLAAA 142 (563)
T ss_pred eeecCceEEEEecccccccCCcccceeccccccchhHHHHHHHhCCc------------cCCeeeeecccHHHHHHHHHH
Confidence 4667799999999997532 222 2478899999999999753 336999999999999999999
Q ss_pred HHH
Q 042897 103 VQL 105 (208)
Q Consensus 103 ~~~ 105 (208)
+..
T Consensus 143 a~~ 145 (563)
T COG2936 143 ALQ 145 (563)
T ss_pred hcC
Confidence 877
No 168
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=97.52 E-value=0.0028 Score=49.51 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=42.7
Q ss_pred cccCCCCcEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEe-CCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 133 LKMMRSDRVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQT-LGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 133 ~~~~~~~p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~-~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
++.++. |++++.=+.|.+.+ +.+++.+.++..+ + +.++ ...||.--. .+.+.+...|.+||+.
T Consensus 302 l~~i~~-~~lv~gi~sD~lfp~~~~~~~~~~L~~~~----~-~~~i~S~~GHDaFL-----~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 302 LARIKA-PVLVVGITSDWLFPPELQRALAEALPAAG----A-LREIDSPYGHDAFL-----VESEAVGPLIRKFLAL 367 (368)
T ss_pred HhcCcc-CEEEEEecccccCCHHHHHHHHHhccccC----c-eEEecCCCCchhhh-----cchhhhhHHHHHHhhc
Confidence 566665 99999999999875 6677888888774 2 4343 345884222 2234566788888874
No 169
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.50 E-value=0.00095 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.2
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+++|+|+|+||..+..++.+.
T Consensus 168 ~~~~~~~i~GeSygG~y~p~~a~~i 192 (462)
T PTZ00472 168 LRANDLFVVGESYGGHYAPATAYRI 192 (462)
T ss_pred ccCCCEEEEeecchhhhHHHHHHHH
Confidence 4468999999999999998887764
No 170
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=97.49 E-value=0.0032 Score=47.08 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=49.9
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFI 204 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl 204 (208)
|-+++..+.|.+++ ..+++.+..++.|. +|+.+.+++..|.-.. ....+++++.+.+|+
T Consensus 180 p~lylYS~~D~l~~~~~ve~~~~~~~~~G~--~V~~~~f~~S~HV~H~----r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 180 PRLYLYSKADPLIPWRDVEEHAEEARRKGW--DVRAEKFEDSPHVAHL----RKHPDRYWRAVDEFW 240 (240)
T ss_pred CeEEecCCCCcCcCHHHHHHHHHHHHHcCC--eEEEecCCCCchhhhc----ccCHHHHHHHHHhhC
Confidence 89999999999885 56889999999987 8999999999998554 344588999988874
No 171
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.41 E-value=0.00037 Score=48.42 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=72.3
Q ss_pred HHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCC----------CCCCCcc-C
Q 042897 58 WAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAG----------FEEDPIL-N 126 (208)
Q Consensus 58 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~ 126 (208)
.+--+|+.+.. -+...++.|.||||+.|+.+..+++.++..++..... .+.|.+. +
T Consensus 88 ~AyerYv~eEa-------------lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddDv~yns 154 (227)
T COG4947 88 RAYERYVIEEA-------------LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDDVYYNS 154 (227)
T ss_pred HHHHHHHHHhh-------------cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCceeecC
Confidence 34456777763 2456889999999999999998885555444332110 0112222 2
Q ss_pred C----------CCCcccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 127 P----------ALDPNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 127 ~----------~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
| -..+.++.+ .+++..|.+|+..+..+.+.+.+.++.+ +..+....+..|.+.
T Consensus 155 P~dylpg~~dp~~l~rlr~~---~~vfc~G~e~~~L~~~~~L~~~l~dKqi--paw~~~WggvaHdw~ 217 (227)
T COG4947 155 PSDYLPGLADPFRLERLRRI---DMVFCIGDEDPFLDNNQHLSRLLSDKQI--PAWMHVWGGVAHDWG 217 (227)
T ss_pred hhhhccCCcChHHHHHHhhc---cEEEEecCccccccchHHHHHHhccccc--cHHHHHhcccccccH
Confidence 2 011233333 5899999999999999999999988876 777788888888543
No 172
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.36 E-value=0.00028 Score=43.12 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=30.2
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH 48 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~ 48 (208)
+.+|+++||-+...+ ....++..++++||.|+.+|+|+....
T Consensus 16 k~~v~i~HG~~eh~~------ry~~~a~~L~~~G~~V~~~D~rGhG~S 57 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSG------RYAHLAEFLAEQGYAVFAYDHRGHGRS 57 (79)
T ss_pred CEEEEEeCCcHHHHH------HHHHHHHHHHhCCCEEEEECCCcCCCC
Confidence 358999999654433 234456667888999999999976543
No 173
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.35 E-value=0.00051 Score=52.36 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=69.7
Q ss_pred CCCceEEeecChhHHHHHHHHHH----HHHHHhhhccC---CCC-CC---C---CC----ccCCCCCcccccCCCCcEEE
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQ----LDEMYAYMCPT---SAG-FE---E---DP----ILNPALDPNLKMMRSDRVLV 143 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~----~~~~~~~~~~~---~~~-~~---~---~~----~~~~~~~~~~~~~~~~p~li 143 (208)
+..++.++|.|+||..++..... ........... ... .. . .. ...-.....+..+...|+++
T Consensus 158 ~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~~P~l~ 237 (299)
T COG1073 158 DASRIVVWGESLGGALALLLLGANPELARELIDYLITPGGFAPLPAPEAPLDTLPLRAVLLLLLDPFDDAEKISPRPVLL 237 (299)
T ss_pred HhhcccceeeccCceeeccccccchHHHHhhhhhhccCCCCCCCCcccccccccccchhhhccCcchhhHhhcCCcceEE
Confidence 45789999999999998875542 11112111111 010 00 0 00 00001112223332129999
Q ss_pred EeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 144 CVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 144 ~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+||.+|.+++ ....+++..+.. +.+...+++++|...... .....+.++++.+|++++
T Consensus 238 ~~G~~D~~vp~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~--~~~~~~~~~~~~~f~~~~ 297 (299)
T COG1073 238 VHGERDEVVPLRDAEDLYEAARER----PKKLLFVPGGGHIDLYDN--PPAVEQALDKLAEFLERH 297 (299)
T ss_pred EecCCCcccchhhhHHHHhhhccC----CceEEEecCCccccccCc--cHHHHHHHHHHHHHHHHh
Confidence 9999999885 566677766654 457888888999755411 223347899999999875
No 174
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.33 E-value=0.021 Score=45.28 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=106.1
Q ss_pred EEEEEcCCc---cccCCCCCchhHHHHHHHHHhCCcEEEEecC----CCC-CC-C----------------------CCC
Q 042897 3 LLIHYHGGG---FCLGSALDMPFKRFLTSLVVKANIVAITIDY----RLA-PE-H----------------------HLP 51 (208)
Q Consensus 3 ~vi~~HGg~---~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~----~~~-~~-~----------------------~~~ 51 (208)
.+|++-||. +.....+ .....+..++...|..|+.+.. ++. .+ . .++
T Consensus 66 all~i~gG~~~~~~~~~~~--~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIAytW~~fl~~~d~~w~ 143 (367)
T PF10142_consen 66 ALLFITGGSNRNWPGPPPD--FDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIAYTWRKFLETGDPEWP 143 (367)
T ss_pred EEEEEECCcccCCCCCCCc--chHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHHHHHHHHhccCCccch
Confidence 578888887 2222222 2356678888888988887642 210 00 0 000
Q ss_pred ---chhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH--------------------HHH
Q 042897 52 ---IAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL--------------------DEM 108 (208)
Q Consensus 52 ---~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~--------------------~~~ 108 (208)
....-+..|++-+.+...+. .+++.++.+|.|.|-=|..+...|+.. ...
T Consensus 144 l~~PMtka~vrAMD~vq~~~~~~-------~~~~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~Vid~LN~~~~l~h~ 216 (367)
T PF10142_consen 144 LHLPMTKAAVRAMDAVQEFLKKK-------FGVNIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPIVIDVLNMKANLEHQ 216 (367)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhh-------cCCCccEEEEeCCchHhHHHHHhhccCcceeEEeeEEEccCCcHHHHHHH
Confidence 12234555555555543322 137789999999999999998877733 111
Q ss_pred HhhhccCCCCCCCCCcc---------CC---------CCCcccccCCCCcEEEEeeCCCCCh--hhHHHHHHHHHhcCCC
Q 042897 109 YAYMCPTSAGFEEDPIL---------NP---------ALDPNLKMMRSDRVLVCVAEKDGLR--NRGVYYYETLKKSEWH 168 (208)
Q Consensus 109 ~~~~~~~~~~~~~~~~~---------~~---------~~~~~~~~~~~~p~li~~G~~D~~~--~~~~~~~~~l~~~g~~ 168 (208)
+..+.+..+.. ..++. .| ....-..++.. |-+++.|..|++. |.+.-+.+.|+.
T Consensus 217 y~~yG~~ws~a-~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL~~-PK~ii~atgDeFf~pD~~~~y~d~L~G---- 290 (367)
T PF10142_consen 217 YRSYGGNWSFA-FQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRLTM-PKYIINATGDEFFVPDSSNFYYDKLPG---- 290 (367)
T ss_pred HHHhCCCCccc-hhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhcCc-cEEEEecCCCceeccCchHHHHhhCCC----
Confidence 22222111111 11111 11 01112244544 8999999999843 677888888875
Q ss_pred cceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 169 GKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 169 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
+..+..+|+.+|+... .+..+.+..|++.
T Consensus 291 -~K~lr~vPN~~H~~~~--------~~~~~~l~~f~~~ 319 (367)
T PF10142_consen 291 -EKYLRYVPNAGHSLIG--------SDVVQSLRAFYNR 319 (367)
T ss_pred -CeeEEeCCCCCcccch--------HHHHHHHHHHHHH
Confidence 4588899999996443 4677888888764
No 175
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.33 E-value=0.00085 Score=54.47 Aligned_cols=68 Identities=13% Similarity=-0.015 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCC-----CCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHH
Q 042897 24 RFLTSLVVKANIVAITIDYRLAPE-----HHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIA 98 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~~~~-----~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a 98 (208)
..+...+.+.||.+ ..|.+..+- .......+++.+.++.+.+. ....+++|+||||||.++
T Consensus 111 ~~li~~L~~~GY~~-~~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~-------------~g~~kV~LVGHSMGGlva 176 (440)
T PLN02733 111 HDMIEQLIKWGYKE-GKTLFGFGYDFRQSNRLPETMDGLKKKLETVYKA-------------SGGKKVNIISHSMGGLLV 176 (440)
T ss_pred HHHHHHHHHcCCcc-CCCcccCCCCccccccHHHHHHHHHHHHHHHHHH-------------cCCCCEEEEEECHhHHHH
Confidence 44556667789865 445443331 11223345555555555443 334789999999999999
Q ss_pred HHHHHHH
Q 042897 99 HYVAVQL 105 (208)
Q Consensus 99 ~~~~~~~ 105 (208)
+.++...
T Consensus 177 ~~fl~~~ 183 (440)
T PLN02733 177 KCFMSLH 183 (440)
T ss_pred HHHHHHC
Confidence 9888755
No 176
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.25 E-value=0.00079 Score=52.93 Aligned_cols=85 Identities=15% Similarity=0.029 Sum_probs=53.2
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcE---EEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIV---AITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNR 79 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~---v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~ 79 (208)
.++++||.+...+.. ..+...++..|+. +..+++... ...........+...++.+....
T Consensus 61 pivlVhG~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~ql~~~V~~~l~~--------- 123 (336)
T COG1075 61 PIVLVHGLGGGYGNF------LPLDYRLAILGWLTNGVYAFELSGG--DGTYSLAVRGEQLFAYVDEVLAK--------- 123 (336)
T ss_pred eEEEEccCcCCcchh------hhhhhhhcchHHHhccccccccccc--CCCccccccHHHHHHHHHHHHhh---------
Confidence 578999965443332 2234446677777 777776643 22333444455555555554332
Q ss_pred CCCCCceEEeecChhHHHHHHHHHHH
Q 042897 80 HADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 80 ~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....++.|+||||||-++..++...
T Consensus 124 -~ga~~v~LigHS~GG~~~ry~~~~~ 148 (336)
T COG1075 124 -TGAKKVNLIGHSMGGLDSRYYLGVL 148 (336)
T ss_pred -cCCCceEEEeecccchhhHHHHhhc
Confidence 3348999999999999999666655
No 177
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.23 E-value=0.0009 Score=54.55 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=57.8
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCC--------------CCchhhHHHHHHHHHHhh
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHH--------------LPIAHEDSWAGLEWVASH 67 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~--------------~~~~~~d~~~~~~~l~~~ 67 (208)
|++|++-|-+-..+.. .....+..++.+.|-.++.+++|..++.. ..+.++|+...+++++..
T Consensus 30 pifl~~ggE~~~~~~~---~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~ 106 (434)
T PF05577_consen 30 PIFLYIGGEGPIEPFW---INNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKK 106 (434)
T ss_dssp EEEEEE--SS-HHHHH---HH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccchhh---hcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHh
Confidence 6777775533221110 11336678999999999999999764331 124678899999998865
Q ss_pred ccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 68 SYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
... .+..+++++|-|+||.+|+.+-.++
T Consensus 107 ~~~----------~~~~pwI~~GgSY~G~Laaw~r~ky 134 (434)
T PF05577_consen 107 YNT----------APNSPWIVFGGSYGGALAAWFRLKY 134 (434)
T ss_dssp TTT----------GCC--EEEEEETHHHHHHHHHHHH-
T ss_pred hcC----------CCCCCEEEECCcchhHHHHHHHhhC
Confidence 321 2346999999999999999888877
No 178
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.11 E-value=0.0015 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.3
Q ss_pred CCceEEeecChhHHHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..+|.+.|||+||.+|..++...
T Consensus 63 ~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 63 DYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHH
T ss_pred CccchhhccchHHHHHHHHHHhh
Confidence 47899999999999999888754
No 179
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.09 E-value=0.0017 Score=52.15 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHHHHhCCcE-----EEE-ecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHH
Q 042897 26 LTSLVVKANIV-----AIT-IDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAH 99 (208)
Q Consensus 26 ~~~~~~~~g~~-----v~~-~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~ 99 (208)
+.+.+.+.||. ..+ .|+|+++. ........+...++.+... ...+++|+||||||.++.
T Consensus 70 li~~L~~~GY~~~~~l~~~pYDWR~~~~-~~~~~~~~lk~~ie~~~~~--------------~~~kv~li~HSmGgl~~~ 134 (389)
T PF02450_consen 70 LIENLEKLGYDRGKDLFAAPYDWRLSPA-ERDEYFTKLKQLIEEAYKK--------------NGKKVVLIAHSMGGLVAR 134 (389)
T ss_pred HHHHHHhcCcccCCEEEEEeechhhchh-hHHHHHHHHHHHHHHHHHh--------------cCCcEEEEEeCCCchHHH
Confidence 34445676765 233 78898775 2222334444444444432 258999999999999999
Q ss_pred HHHHHH
Q 042897 100 YVAVQL 105 (208)
Q Consensus 100 ~~~~~~ 105 (208)
.++...
T Consensus 135 ~fl~~~ 140 (389)
T PF02450_consen 135 YFLQWM 140 (389)
T ss_pred HHHHhc
Confidence 877765
No 180
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0078 Score=43.54 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=56.4
Q ss_pred CEEEEEcCCccccCCCC-----------CchhHHHHHHHHHhCCcEEEEecCCCC---------CCCCCCchhhHHHHHH
Q 042897 2 PLLIHYHGGGFCLGSAL-----------DMPFKRFLTSLVVKANIVAITIDYRLA---------PEHHLPIAHEDSWAGL 61 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~-----------~~~~~~~~~~~~~~~g~~v~~~d~~~~---------~~~~~~~~~~d~~~~~ 61 (208)
.++|+|||.|..+...+ +..-.+++.+ +.+.||.|++.+-... |.....+.++-+.-.+
T Consensus 102 kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~r-Av~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yvw 180 (297)
T KOG3967|consen 102 KLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKR-AVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYVW 180 (297)
T ss_pred ceEEEEecCceEecchHhhhhhhccccccCCcChHHHH-HHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHHH
Confidence 36899999875443221 1112344444 4555998888764311 1112234555566666
Q ss_pred HHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 62 EWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 62 ~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..+... ..+..|+++-||.||...+.++.+.
T Consensus 181 ~~~v~p-------------a~~~sv~vvahsyGG~~t~~l~~~f 211 (297)
T KOG3967|consen 181 KNIVLP-------------AKAESVFVVAHSYGGSLTLDLVERF 211 (297)
T ss_pred HHHhcc-------------cCcceEEEEEeccCChhHHHHHHhc
Confidence 666553 4568899999999999999998765
No 181
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.99 E-value=0.0023 Score=44.35 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.7
Q ss_pred CCCceEEeecChhHHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQLD 106 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~~ 106 (208)
...+|.++|||+||.+|..++....
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 4589999999999999999887653
No 182
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.94 E-value=0.0017 Score=47.90 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
......|++|+.+..... ..++.|.|||.||++|..++...
T Consensus 65 ~~~q~~A~~yl~~~~~~~-----------~~~i~v~GHSkGGnLA~yaa~~~ 105 (224)
T PF11187_consen 65 TPQQKSALAYLKKIAKKY-----------PGKIYVTGHSKGGNLAQYAAANC 105 (224)
T ss_pred CHHHHHHHHHHHHHHHhC-----------CCCEEEEEechhhHHHHHHHHHc
Confidence 344567778887765432 24699999999999999988875
No 183
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=96.93 E-value=0.017 Score=43.93 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=45.3
Q ss_pred cccccCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 131 PNLKMMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 131 ~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
...+.+.. |+|++.|+.-+..+...++..++... +.++...++.|=. +..++..++.+.+.=|++
T Consensus 213 ~~~~~~~c-~vLlvvG~~Sp~~~~vv~~ns~Ldp~----~ttllkv~dcGgl-----V~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 213 IERPSLGC-PVLLVVGDNSPHVDDVVEMNSKLDPT----KTTLLKVADCGGL-----VLEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp SECTTCCS--EEEEEETTSTTHHHHHHHHHHS-CC----CEEEEEETT-TT------HHHH-HHHHHHHHHHHHH
T ss_pred hhcCCCCC-CeEEEEecCCcchhhHHHHHhhcCcc----cceEEEecccCCc-----ccccCcHHHHHHHHHHHc
Confidence 34444455 99999999999998888888888544 8899999987652 233555777777777775
No 184
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=96.86 E-value=0.003 Score=45.74 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=44.1
Q ss_pred CcEEEEecCCCCCCC------------CCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHH
Q 042897 34 NIVAITIDYRLAPEH------------HLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYV 101 (208)
Q Consensus 34 g~~v~~~d~~~~~~~------------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~ 101 (208)
-.+|.+|-||-..-. .+.....|+.+|.++-.++. -+.+.++|.|||+|+.+...+
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~------------n~GRPfILaGHSQGs~~l~~L 112 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY------------NNGRPFILAGHSQGSMHLLRL 112 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc------------CCCCCEEEEEeChHHHHHHHH
Confidence 367999999853211 12234579999988776653 344799999999999999999
Q ss_pred HHHH
Q 042897 102 AVQL 105 (208)
Q Consensus 102 ~~~~ 105 (208)
+.+.
T Consensus 113 L~e~ 116 (207)
T PF11288_consen 113 LKEE 116 (207)
T ss_pred HHHH
Confidence 9876
No 185
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.86 E-value=0.0038 Score=57.69 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=48.8
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-CCCchhhHHHH-HHHHHHhhccCCCCCCcccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-HLPIAHEDSWA-GLEWVASHSYGQGPEPLLNR 79 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-~~~~~~~d~~~-~~~~l~~~~~~~~~~~~~~~ 79 (208)
|.++++||.+.... .|... ...+. .++.|+.++.++.... .....++++.+ .++.+.+.
T Consensus 1069 ~~l~~lh~~~g~~~-----~~~~l-~~~l~-~~~~v~~~~~~g~~~~~~~~~~l~~la~~~~~~i~~~------------ 1129 (1296)
T PRK10252 1069 PTLFCFHPASGFAW-----QFSVL-SRYLD-PQWSIYGIQSPRPDGPMQTATSLDEVCEAHLATLLEQ------------ 1129 (1296)
T ss_pred CCeEEecCCCCchH-----HHHHH-HHhcC-CCCcEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhh------------
Confidence 46889999664321 23333 33333 3689999988754322 11223333322 22223221
Q ss_pred CCCCCceEEeecChhHHHHHHHHHHH
Q 042897 80 HADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 80 ~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....++.++|||+||.+|..++.+.
T Consensus 1130 -~~~~p~~l~G~S~Gg~vA~e~A~~l 1154 (1296)
T PRK10252 1130 -QPHGPYHLLGYSLGGTLAQGIAARL 1154 (1296)
T ss_pred -CCCCCEEEEEechhhHHHHHHHHHH
Confidence 1124799999999999999999865
No 186
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.047 Score=40.99 Aligned_cols=87 Identities=15% Similarity=0.002 Sum_probs=51.3
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCC-chhhHHHHHHHHHHhhccCCCCCCcccCCCC
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLP-IAHEDSWAGLEWVASHSYGQGPEPLLNRHAD 82 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (208)
+|++||=|-...+. ........+-.--|..|.+++---+-...+- ...+.+..+-+.++.. .++
T Consensus 26 ~ii~HGigd~c~~~---~~~~~~q~l~~~~g~~v~~leig~g~~~s~l~pl~~Qv~~~ce~v~~m-~~l----------- 90 (296)
T KOG2541|consen 26 VIVWHGIGDSCSSL---SMANLTQLLEELPGSPVYCLEIGDGIKDSSLMPLWEQVDVACEKVKQM-PEL----------- 90 (296)
T ss_pred EEEEeccCcccccc---hHHHHHHHHHhCCCCeeEEEEecCCcchhhhccHHHHHHHHHHHHhcc-hhc-----------
Confidence 56689933222221 1233333333344888888885433223333 3444555566666633 222
Q ss_pred CCceEEeecChhHHHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
++-+.++|.|+||.++-.++...
T Consensus 91 sqGynivg~SQGglv~Raliq~c 113 (296)
T KOG2541|consen 91 SQGYNIVGYSQGGLVARALIQFC 113 (296)
T ss_pred cCceEEEEEccccHHHHHHHHhC
Confidence 37799999999999998888766
No 187
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=96.48 E-value=0.26 Score=37.68 Aligned_cols=61 Identities=11% Similarity=0.165 Sum_probs=44.2
Q ss_pred cCCCCcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 135 MMRSDRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 135 ~~~~~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
.+.. |++++.|++-+.++...++..+|... ..++....+.|=. +..++...+.+.+.=|++
T Consensus 244 tlkc-~vllvvGd~Sp~~~~vv~~n~~Ldp~----~ttllk~~d~g~l-----~~e~qP~kl~ea~~~Flq 304 (326)
T KOG2931|consen 244 TLKC-PVLLVVGDNSPHVSAVVECNSKLDPT----YTTLLKMADCGGL-----VQEEQPGKLAEAFKYFLQ 304 (326)
T ss_pred cccc-cEEEEecCCCchhhhhhhhhcccCcc----cceEEEEcccCCc-----ccccCchHHHHHHHHHHc
Confidence 3445 99999999998888888887777655 7788888877663 223345667777766664
No 188
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.48 E-value=0.0071 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.6
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...+|++.|||+||.+|..++...
T Consensus 126 p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 126 PDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred CCceEEEEccCHHHHHHHHHHHHH
Confidence 357899999999999999888754
No 189
>PLN02606 palmitoyl-protein thioesterase
Probab=96.30 E-value=0.048 Score=41.90 Aligned_cols=86 Identities=13% Similarity=0.072 Sum_probs=48.8
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHh-CCcEEEEecCCCCCCCCC-CchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVK-ANIVAITIDYRLAPEHHL-PIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~-~g~~v~~~d~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
||++||=|=...+. . ...+.+++.+ .|..+..+-.-......+ -...+.+..+.+.|++. ..+
T Consensus 29 vViwHGlgD~~~~~---~-~~~~~~~i~~~~~~pg~~v~ig~~~~~s~~~~~~~Qv~~vce~l~~~-~~L---------- 93 (306)
T PLN02606 29 FVLFHGFGGECSNG---K-VSNLTQFLINHSGYPGTCVEIGNGVQDSLFMPLRQQASIACEKIKQM-KEL---------- 93 (306)
T ss_pred EEEECCCCcccCCc---h-HHHHHHHHHhCCCCCeEEEEECCCcccccccCHHHHHHHHHHHHhcc-hhh----------
Confidence 56689933111221 1 3445666652 366544443111111233 44456666677777663 222
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+-+.++|+|+||.++-.++.++
T Consensus 94 -~~G~naIGfSQGglflRa~ierc 116 (306)
T PLN02606 94 -SEGYNIVAESQGNLVARGLIEFC 116 (306)
T ss_pred -cCceEEEEEcchhHHHHHHHHHC
Confidence 24689999999999998888877
No 190
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.19 E-value=0.021 Score=36.74 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=39.1
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|+|++.++.|+.++ .++++.+.+.. .+++..++.||+..... . .-..+.+.+||..
T Consensus 36 piL~l~~~~Dp~TP~~~a~~~~~~l~~------s~lvt~~g~gHg~~~~~--s---~C~~~~v~~yl~~ 93 (103)
T PF08386_consen 36 PILVLGGTHDPVTPYEGARAMAARLPG------SRLVTVDGAGHGVYAGG--S---PCVDKAVDDYLLD 93 (103)
T ss_pred CEEEEecCcCCCCcHHHHHHHHHHCCC------ceEEEEeccCcceecCC--C---hHHHHHHHHHHHc
Confidence 99999999999886 45666665543 48999999999855311 1 2345556677763
No 191
>PLN02454 triacylglycerol lipase
Probab=96.17 E-value=0.012 Score=47.13 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.6
Q ss_pred ceEEeecChhHHHHHHHHHHH
Q 042897 85 RVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 85 ~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+|++.|||+||.+|...|...
T Consensus 229 sI~vTGHSLGGALAtLaA~di 249 (414)
T PLN02454 229 SIVLTGHSLGASLATLAAFDI 249 (414)
T ss_pred eEEEEecCHHHHHHHHHHHHH
Confidence 499999999999999888654
No 192
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=96.11 E-value=0.023 Score=47.51 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCcE-----EEEecCCCCCCCCC--CchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHH
Q 042897 24 RFLTSLVVKANIV-----AITIDYRLAPEHHL--PIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGAN 96 (208)
Q Consensus 24 ~~~~~~~~~~g~~-----v~~~d~~~~~~~~~--~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~ 96 (208)
..+.+.+++.||. .+.+|+|+++...- ..-...+...++.+.+. ....+++|+||||||.
T Consensus 159 ~kLIe~L~~iGY~~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~-------------nggkKVVLV~HSMGgl 225 (642)
T PLN02517 159 AVLIANLARIGYEEKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVAT-------------NGGKKVVVVPHSMGVL 225 (642)
T ss_pred HHHHHHHHHcCCCCCceeecccccccCccchhhhhHHHHHHHHHHHHHHHH-------------cCCCeEEEEEeCCchH
Confidence 3344555677875 45667787643221 22334455555554442 2247999999999999
Q ss_pred HHHHHHH
Q 042897 97 IAHYVAV 103 (208)
Q Consensus 97 ~a~~~~~ 103 (208)
+++.++.
T Consensus 226 v~lyFL~ 232 (642)
T PLN02517 226 YFLHFMK 232 (642)
T ss_pred HHHHHHH
Confidence 9998765
No 193
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=96.05 E-value=0.024 Score=45.81 Aligned_cols=61 Identities=25% Similarity=0.294 Sum_probs=36.1
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCCC--------------------cceEEEEeCCCCccccccCCCCCchHHHH
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEWH--------------------GKAEFYQTLGEDHCFHMFNPKSKNVGPFL 197 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~~--------------------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~ 197 (208)
++||.+|..|.+++ .++.+.+.+.-.+.. .+.++..+.++||.-+. .+.+..+
T Consensus 332 rVLiy~Gd~D~i~n~~Gt~~~i~~L~w~~~~~f~~~~~~~~~~~~G~~k~~~~ltf~~V~~AGHmvP~-----dqP~~a~ 406 (415)
T PF00450_consen 332 RVLIYNGDLDLICNFLGTERWIDNLNWSGKDGFRQWPRKVNGQVAGYVKQYGNLTFVTVRGAGHMVPQ-----DQPEAAL 406 (415)
T ss_dssp EEEEEEETT-SSS-HHHHHHHHHCTECTEEEEEEEEEEETTCSEEEEEEEETTEEEEEETT--SSHHH-----HSHHHHH
T ss_pred eeEEeccCCCEEEEeccchhhhhccccCcccccccccccccccccceeEEeccEEEEEEcCCcccChh-----hCHHHHH
Confidence 89999999998875 345555544322100 12356778889996444 3346778
Q ss_pred HHHHHHHH
Q 042897 198 QKLVNFIK 205 (208)
Q Consensus 198 ~~i~~fl~ 205 (208)
+.+..||+
T Consensus 407 ~m~~~fl~ 414 (415)
T PF00450_consen 407 QMFRRFLK 414 (415)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 88888875
No 194
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=95.92 E-value=0.085 Score=37.61 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.5
Q ss_pred CCCceEEeecChhHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
...+|+|+|+|+|+.++..++..
T Consensus 79 P~~kivl~GYSQGA~V~~~~~~~ 101 (179)
T PF01083_consen 79 PNTKIVLAGYSQGAMVVGDALSG 101 (179)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHH
T ss_pred CCCCEEEEecccccHHHHHHHHh
Confidence 34799999999999999999877
No 195
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=95.57 E-value=0.042 Score=42.86 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=48.1
Q ss_pred HHhCCcEEEEecCCCCC---CCCCCchhh-HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 30 VVKANIVAITIDYRLAP---EHHLPIAHE-DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 30 ~~~~g~~v~~~d~~~~~---~~~~~~~~~-d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-++.||.|+..++++.. +.+++.... -+.++++|..+.. +..+++|+|.|+|.||.-++.+|..+
T Consensus 264 P~~lgYsvLGwNhPGFagSTG~P~p~n~~nA~DaVvQfAI~~L-----------gf~~edIilygWSIGGF~~~waAs~Y 332 (517)
T KOG1553|consen 264 PAQLGYSVLGWNHPGFAGSTGLPYPVNTLNAADAVVQFAIQVL-----------GFRQEDIILYGWSIGGFPVAWAASNY 332 (517)
T ss_pred hHHhCceeeccCCCCccccCCCCCcccchHHHHHHHHHHHHHc-----------CCCccceEEEEeecCCchHHHHhhcC
Confidence 35679999999987643 345555443 3445567666653 27889999999999999999988876
No 196
>PLN00413 triacylglycerol lipase
Probab=95.54 E-value=0.029 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCCceEEeecChhHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
...+++|.|||+||.+|...+..
T Consensus 282 p~~kliVTGHSLGGALAtLaA~~ 304 (479)
T PLN00413 282 PTSKFILSGHSLGGALAILFTAV 304 (479)
T ss_pred CCCeEEEEecCHHHHHHHHHHHH
Confidence 34689999999999999887753
No 197
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.53 E-value=0.57 Score=38.43 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=55.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEe-cCCCCCCCCCCchhhHHHHH-HHHHHhhccCCCCCCcccC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITI-DYRLAPEHHLPIAHEDSWAG-LEWVASHSYGQGPEPLLNR 79 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-d~~~~~~~~~~~~~~d~~~~-~~~l~~~~~~~~~~~~~~~ 79 (208)
|+.|++.|.-...|.. . -.+.++.|...+.+ |-|+ .+..|....++.++. ++-+++..+.++
T Consensus 290 PL~VYFSGyR~aEGFE-----g---y~MMk~Lg~PfLL~~DpRl-eGGaFYlGs~eyE~~I~~~I~~~L~~Lg------- 353 (511)
T TIGR03712 290 PLNVYFSGYRPAEGFE-----G---YFMMKRLGAPFLLIGDPRL-EGGAFYLGSDEYEQGIINVIQEKLDYLG------- 353 (511)
T ss_pred CeEEeeccCcccCcch-----h---HHHHHhcCCCeEEeecccc-ccceeeeCcHHHHHHHHHHHHHHHHHhC-------
Confidence 7778887733222221 1 23345668876665 4454 445555555554443 344445555555
Q ss_pred CCCCCceEEeecChhHHHHHHHHHHH
Q 042897 80 HADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 80 ~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.+.++|.|-|||..-|+..+++.
T Consensus 354 -F~~~qLILSGlSMGTfgAlYYga~l 378 (511)
T TIGR03712 354 -FDHDQLILSGLSMGTFGALYYGAKL 378 (511)
T ss_pred -CCHHHeeeccccccchhhhhhcccC
Confidence 8899999999999999999999876
No 198
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.53 E-value=0.056 Score=44.64 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=47.1
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCC------CcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEW------HGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+++.||..|.+++ .+..+++++.+.-. ..=.++++.||++|+..-..+. .-+.+..+.+|+++-
T Consensus 355 KLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~---~~d~l~aL~~WVE~G 427 (474)
T PF07519_consen 355 KLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPD---PFDALTALVDWVENG 427 (474)
T ss_pred eEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCC---CCCHHHHHHHHHhCC
Confidence 89999999999874 56677776654431 1246899999999987653221 236789999999863
No 199
>PLN02571 triacylglycerol lipase
Probab=95.45 E-value=0.032 Score=44.79 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.7
Q ss_pred ceEEeecChhHHHHHHHHHHH
Q 042897 85 RVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 85 ~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+|.|.|||+||.+|...|...
T Consensus 227 sI~VTGHSLGGALAtLaA~dl 247 (413)
T PLN02571 227 SITICGHSLGAALATLNAVDI 247 (413)
T ss_pred cEEEeccchHHHHHHHHHHHH
Confidence 699999999999999888754
No 200
>PLN02633 palmitoyl protein thioesterase family protein
Probab=95.43 E-value=0.19 Score=38.85 Aligned_cols=86 Identities=15% Similarity=0.049 Sum_probs=49.0
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhC-CcEEEEecCCCCCCCCCC-chhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKA-NIVAITIDYRLAPEHHLP-IAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~-g~~v~~~d~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
+|+.||=|=...+. . ...+.+++.+. |..+.++.---+....+- ...+.++.+.+.|++. ..+
T Consensus 28 ~ViwHG~GD~c~~~---g-~~~~~~l~~~~~g~~~~~i~ig~~~~~s~~~~~~~Qve~vce~l~~~-~~l---------- 92 (314)
T PLN02633 28 FIMLHGIGTQCSDA---T-NANFTQLLTNLSGSPGFCLEIGNGVGDSWLMPLTQQAEIACEKVKQM-KEL---------- 92 (314)
T ss_pred eEEecCCCcccCCc---h-HHHHHHHHHhCCCCceEEEEECCCccccceeCHHHHHHHHHHHHhhc-hhh----------
Confidence 46689933222222 1 34445555543 666665543222233333 3344555666666652 222
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+-+.++|+|+||.++-.++.+.
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc 115 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFC 115 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHC
Confidence 24699999999999998888877
No 201
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=95.41 E-value=0.053 Score=43.25 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCC-CC----------------CchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCce
Q 042897 24 RFLTSLVVKANIVAITIDYRLAPEH-HL----------------PIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRV 86 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~~~~~-~~----------------~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 86 (208)
.++.+++.+.+..+|.+++|...+. +| .+.+.|....+.+|+.... .....+
T Consensus 101 GFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~-----------a~~~pv 169 (492)
T KOG2183|consen 101 GFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLS-----------AEASPV 169 (492)
T ss_pred chHHhhhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccc-----------cccCcE
Confidence 5678899999999999999965432 11 2456677777888877632 456899
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
+++|-|+||.+|+.+=.++
T Consensus 170 IafGGSYGGMLaAWfRlKY 188 (492)
T KOG2183|consen 170 IAFGGSYGGMLAAWFRLKY 188 (492)
T ss_pred EEecCchhhHHHHHHHhcC
Confidence 9999999999988776655
No 202
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.29 E-value=0.13 Score=42.07 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=39.1
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCC----------------C--cc-eEEEEeCCCCccccccCCCCCchHHHHH
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEW----------------H--GK-AEFYQTLGEDHCFHMFNPKSKNVGPFLQ 198 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~----------------~--~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 198 (208)
++||..|+.|.+++ -++.+.+.|+-.+. + .+ .++..+-++||.-. .+.+...+
T Consensus 349 rVLiY~Gd~D~icn~~Gt~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~n~ltfv~V~~AGHmVp------~qP~~al~ 422 (433)
T PLN03016 349 RSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTAE------YRPNETFI 422 (433)
T ss_pred eEEEEECCccccCCcHhHHHHHHhCCCCCCCCcccccCCCEeeeEEEEeCCceEEEEEcCCCCCCC------CCHHHHHH
Confidence 79999999998775 34555555542210 0 01 45566678999532 14567788
Q ss_pred HHHHHHHh
Q 042897 199 KLVNFIKS 206 (208)
Q Consensus 199 ~i~~fl~~ 206 (208)
.+..|++.
T Consensus 423 m~~~Fi~~ 430 (433)
T PLN03016 423 MFQRWISG 430 (433)
T ss_pred HHHHHHcC
Confidence 88888864
No 203
>PLN02934 triacylglycerol lipase
Probab=95.17 E-value=0.043 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCCceEEeecChhHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
...++++.|||.||.+|..++..
T Consensus 319 p~~kIvVTGHSLGGALAtLaA~~ 341 (515)
T PLN02934 319 KNAKFVVTGHSLGGALAILFPTV 341 (515)
T ss_pred CCCeEEEeccccHHHHHHHHHHH
Confidence 34689999999999999888754
No 204
>PLN02408 phospholipase A1
Probab=95.14 E-value=0.048 Score=43.15 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.7
Q ss_pred CceEEeecChhHHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQLD 106 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~~ 106 (208)
-+|.|.|||+||.+|...|....
T Consensus 200 ~sI~vTGHSLGGALAtLaA~dl~ 222 (365)
T PLN02408 200 LSLTITGHSLGAALATLTAYDIK 222 (365)
T ss_pred ceEEEeccchHHHHHHHHHHHHH
Confidence 46999999999999998887653
No 205
>PLN02162 triacylglycerol lipase
Probab=95.08 E-value=0.047 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.9
Q ss_pred CCceEEeecChhHHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
..++++.|||.||.+|...+..
T Consensus 277 ~~kliVTGHSLGGALAtLaAa~ 298 (475)
T PLN02162 277 NLKYILTGHSLGGALAALFPAI 298 (475)
T ss_pred CceEEEEecChHHHHHHHHHHH
Confidence 4689999999999999887653
No 206
>PLN02209 serine carboxypeptidase
Probab=95.06 E-value=0.14 Score=41.97 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=38.1
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCCC------------------cc-eEEEEeCCCCccccccCCCCCchHHHHH
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEWH------------------GK-AEFYQTLGEDHCFHMFNPKSKNVGPFLQ 198 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~~------------------~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 198 (208)
++++..|+.|.+++ -++.+.+.|+-.+.. .+ .++..+.++||.- + .+.+..++
T Consensus 353 rVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~y~n~Ltfv~V~~AGHmV----p--~qP~~al~ 426 (437)
T PLN02209 353 RSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNKMTFATVKGGGHTA----E--YLPEESSI 426 (437)
T ss_pred eEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEEeCCceEEEEEcCCCCCc----C--cCHHHHHH
Confidence 79999999998775 346666665522110 01 4455566788853 1 14567788
Q ss_pred HHHHHHHh
Q 042897 199 KLVNFIKS 206 (208)
Q Consensus 199 ~i~~fl~~ 206 (208)
.+..|+..
T Consensus 427 m~~~fi~~ 434 (437)
T PLN02209 427 MFQRWISG 434 (437)
T ss_pred HHHHHHcC
Confidence 88888764
No 207
>PLN02324 triacylglycerol lipase
Probab=94.74 E-value=0.071 Score=42.84 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.0
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-+|.+.|||+||.+|...|...
T Consensus 215 ~sItvTGHSLGGALAtLaA~dl 236 (415)
T PLN02324 215 ISITFTGHSLGAVMSVLSAADL 236 (415)
T ss_pred ceEEEecCcHHHHHHHHHHHHH
Confidence 3799999999999999888654
No 208
>PLN02753 triacylglycerol lipase
Probab=94.67 E-value=0.081 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.9
Q ss_pred CCceEEeecChhHHHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..+|.|.|||+||.+|...|...
T Consensus 311 ~~sItVTGHSLGGALAtLaA~Dl 333 (531)
T PLN02753 311 DLSITVTGHSLGGALAILSAYDI 333 (531)
T ss_pred CceEEEEccCHHHHHHHHHHHHH
Confidence 36899999999999999888654
No 209
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=94.67 E-value=0.11 Score=42.24 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.6
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+++|++||||+.+.+..+...
T Consensus 182 kkVvlisHSMG~l~~lyFl~w~ 203 (473)
T KOG2369|consen 182 KKVVLISHSMGGLYVLYFLKWV 203 (473)
T ss_pred CceEEEecCCccHHHHHHHhcc
Confidence 7999999999999998877654
No 210
>PLN03037 lipase class 3 family protein; Provisional
Probab=94.63 E-value=0.05 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.0
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..|.|.|||+||.+|...|...
T Consensus 318 ~SItVTGHSLGGALAtLaA~DI 339 (525)
T PLN03037 318 VSLTITGHSLGGALALLNAYEA 339 (525)
T ss_pred ceEEEeccCHHHHHHHHHHHHH
Confidence 4799999999999998888654
No 211
>PLN02310 triacylglycerol lipase
Probab=94.56 E-value=0.058 Score=43.26 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=18.9
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+|.|.|||+||.+|...+...
T Consensus 209 ~sI~vTGHSLGGALAtLaA~dl 230 (405)
T PLN02310 209 VSLTVTGHSLGGALALLNAYEA 230 (405)
T ss_pred ceEEEEcccHHHHHHHHHHHHH
Confidence 5799999999999998877643
No 212
>PLN02802 triacylglycerol lipase
Probab=94.44 E-value=0.087 Score=43.33 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=19.2
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-+|.|.|||+||.+|...+...
T Consensus 330 ~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 330 LSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred ceEEEeccchHHHHHHHHHHHH
Confidence 4799999999999999888755
No 213
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=94.39 E-value=0.24 Score=40.60 Aligned_cols=45 Identities=27% Similarity=0.221 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.-+|+..+.+.+.+...+.. -..++.+|+|.|+||+-+..+|...
T Consensus 175 ~~~D~~~~~~~f~~~fp~~~--------r~~~~~~L~GESYgg~yip~~A~~L 219 (498)
T COG2939 175 AGKDVYSFLRLFFDKFPHYA--------RLLSPKFLAGESYGGHYIPVFAHEL 219 (498)
T ss_pred cchhHHHHHHHHHHHHHHHh--------hhcCceeEeeccccchhhHHHHHHH
Confidence 34678777777766544332 2336899999999999888877654
No 214
>PLN02719 triacylglycerol lipase
Probab=94.30 E-value=0.11 Score=42.85 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.3
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-+|.|.|||+||.+|...|...
T Consensus 298 ~sItVTGHSLGGALAtLaA~Dl 319 (518)
T PLN02719 298 LSITVTGHSLGGALAVLSAYDV 319 (518)
T ss_pred ceEEEecCcHHHHHHHHHHHHH
Confidence 4799999999999999888654
No 215
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=94.19 E-value=0.18 Score=38.45 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=18.6
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+-+.++|+|+||.++-.++.++
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c 101 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRC 101 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-
T ss_pred cceeeeeeccccHHHHHHHHHC
Confidence 5799999999999999998887
No 216
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.17 E-value=0.63 Score=38.22 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=60.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC----C----------CCchhhHHHHHHHHHHhh
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH----H----------LPIAHEDSWAGLEWVASH 67 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~----~----------~~~~~~d~~~~~~~l~~~ 67 (208)
|+.|+|-|-|- .+.+....-...+..++++.|-.|+.+++|..... . ..+.+.|+...++.+..+
T Consensus 87 PiFLmIGGEgp-~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k 165 (514)
T KOG2182|consen 87 PIFLMIGGEGP-ESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAK 165 (514)
T ss_pred ceEEEEcCCCC-CCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 66677766443 23222111134457888999999999999965422 1 124567888887777665
Q ss_pred ccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 68 SYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
... -+..+.+..|-|+-|.+++.+=..+
T Consensus 166 ~n~----------~~~~~WitFGgSYsGsLsAW~R~~y 193 (514)
T KOG2182|consen 166 FNF----------SDDSKWITFGGSYSGSLSAWFREKY 193 (514)
T ss_pred cCC----------CCCCCeEEECCCchhHHHHHHHHhC
Confidence 321 2335999999999999998765555
No 217
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=94.16 E-value=0.21 Score=40.94 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.7
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...++.+|.|.|++|+.+-++|.+.
T Consensus 165 y~~~~fyI~GESYAG~YVP~La~~I 189 (454)
T KOG1282|consen 165 YKSNDFYIAGESYAGHYVPALAQEI 189 (454)
T ss_pred hcCCCeEEecccccceehHHHHHHH
Confidence 6678999999999999888888765
No 218
>PLN02761 lipase class 3 family protein
Probab=94.12 E-value=0.11 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.2
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+|.|.|||+||.+|...|...
T Consensus 294 ~sItVTGHSLGGALAtLaA~DI 315 (527)
T PLN02761 294 ISITVTGHSLGASLALVSAYDI 315 (527)
T ss_pred ceEEEeccchHHHHHHHHHHHH
Confidence 5799999999999999888654
No 219
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=93.92 E-value=0.13 Score=40.61 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 55 EDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 55 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..+.+.++.|.+. ...-+|.+.|||+||.+|...|...
T Consensus 155 ~~~~~~~~~L~~~-------------~~~~~i~vTGHSLGgAlA~laa~~i 192 (336)
T KOG4569|consen 155 SGLDAELRRLIEL-------------YPNYSIWVTGHSLGGALASLAALDL 192 (336)
T ss_pred HHHHHHHHHHHHh-------------cCCcEEEEecCChHHHHHHHHHHHH
Confidence 3555666666665 3347899999999999999888754
No 220
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=93.75 E-value=0.47 Score=35.19 Aligned_cols=24 Identities=38% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..++++|+|+|+|+.++...+.+.
T Consensus 46 ~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 46 AGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHH
Confidence 458899999999999999888776
No 221
>PLN02847 triacylglycerol lipase
Probab=93.54 E-value=0.16 Score=42.61 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.6
Q ss_pred CCceEEeecChhHHHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.-+++|+|||+||.+|..++...
T Consensus 250 dYkLVITGHSLGGGVAALLAilL 272 (633)
T PLN02847 250 DFKIKIVGHSLGGGTAALLTYIL 272 (633)
T ss_pred CCeEEEeccChHHHHHHHHHHHH
Confidence 46899999999999998877643
No 222
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=93.25 E-value=2 Score=33.53 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.+..|+.+|..+. -..++|++.|||-|+++|--+|...
T Consensus 104 ~~nI~~AYrFL~~~y------------epGD~Iy~FGFSRGAf~aRVlagmi 143 (423)
T COG3673 104 VQNIREAYRFLIFNY------------EPGDEIYAFGFSRGAFSARVLAGMI 143 (423)
T ss_pred HHHHHHHHHHHHHhc------------CCCCeEEEeeccchhHHHHHHHHHH
Confidence 357888999998874 2348999999999999987666544
No 223
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=93.23 E-value=0.72 Score=32.91 Aligned_cols=59 Identities=25% Similarity=0.163 Sum_probs=35.9
Q ss_pred CcEEEEecCCCCCCC-CCCchhhHHH-HHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 34 NIVAITIDYRLAPEH-HLPIAHEDSW-AGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 34 g~~v~~~d~~~~~~~-~~~~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.++.++++..... ......++.. ...+.+... ....++.++|||+||.++..++.+.
T Consensus 25 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~l~g~s~Gg~~a~~~a~~l 85 (212)
T smart00824 25 RRDVSALPLPGFGPGEPLPASADALVEAQAEAVLRA-------------AGGRPFVLVGHSSGGLLAHAVAARL 85 (212)
T ss_pred CccEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------------cCCCCeEEEEECHHHHHHHHHHHHH
Confidence 578888887754321 2222333322 223333332 2236789999999999999888865
No 224
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=92.32 E-value=3 Score=29.71 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.7
Q ss_pred CCCceEEeecChhHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
...++.++|||+|..++-..+..
T Consensus 107 ~~~~~tv~GHSYGS~v~G~A~~~ 129 (177)
T PF06259_consen 107 PDAHLTVVGHSYGSTVVGLAAQQ 129 (177)
T ss_pred CCCCEEEEEecchhHHHHHHhhh
Confidence 45789999999999999887765
No 225
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=92.08 E-value=0.37 Score=34.63 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=41.4
Q ss_pred ccCCCCcEEEEeeCCCCChhhH-----HHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 134 KMMRSDRVLVCVAEKDGLRNRG-----VYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 134 ~~~~~~p~li~~G~~D~~~~~~-----~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
+.+..++++-+-|++|.+...+ ..+..-+.+. ...-+..+|.|| +..++.. -=..++.-.|.+|+.+|
T Consensus 130 ~aI~~taLlTVEGe~DDIsg~GQT~AA~~LC~glp~~----~k~~~~~~g~GH-YGlF~G~-rwr~~I~P~i~~fi~~~ 202 (202)
T PF06850_consen 130 AAIRRTALLTVEGERDDISGPGQTHAAHDLCTGLPAD----MKRHHLQPGVGH-YGLFNGS-RWREEIYPRIREFIRQH 202 (202)
T ss_pred HHcccceeEEeecCcccCCcchHHHHHHHHhcCCCHH----HhhhcccCCCCe-eecccch-hhhhhhhHHHHHHHHhC
Confidence 3344347888999999987533 3333333333 456677899999 5554431 11234566778888764
No 226
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=91.46 E-value=4.9 Score=31.09 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=39.1
Q ss_pred cEEEEeeCCCCCh--hhH---HHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 140 RVLVCVAEKDGLR--NRG---VYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 140 p~li~~G~~D~~~--~~~---~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
-++-+-||+|.+. -++ ..+...+.+. ..+.+.-|+.|| +..++. ..-.+++.-+|.+|+.++
T Consensus 341 aL~tvEGEnDDIsgvGQTkAA~~LC~nIpe~----mk~hy~qp~vGH-YGVFnG-srfr~eIvPri~dFI~~~ 407 (415)
T COG4553 341 ALFTVEGENDDISGVGQTKAAHDLCSNIPED----MKQHYMQPDVGH-YGVFNG-SRFREEIVPRIRDFIRRY 407 (415)
T ss_pred eEEEeecccccccccchhHHHHHHHhcChHH----HHHHhcCCCCCc-cceecc-chHHHHHHHHHHHHHHHh
Confidence 4788999999864 233 3344333333 456778899999 454443 222345666888998875
No 227
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=91.22 E-value=1.3 Score=26.87 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=43.7
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccccc-CCCCCchHHHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMF-NPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~-~~~~~~~~~~~~~i~~fl~ 205 (208)
-++++||-.|... .-..+++.|.+.|. .++.++-.||+.... .......+++++++.+|++
T Consensus 18 ~v~i~HG~~eh~~-ry~~~a~~L~~~G~----~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 18 VVVIVHGFGEHSG-RYAHLAEFLAEQGY----AVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred EEEEeCCcHHHHH-HHHHHHHHHHhCCC----EEEEECCCcCCCCCCcccccCCHHHHHHHHHHHhC
Confidence 4889999876443 45667888888876 778888889986542 1234556788888888863
No 228
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=90.89 E-value=0.096 Score=17.03 Aligned_cols=6 Identities=67% Similarity=1.520 Sum_probs=4.6
Q ss_pred cCCccc
Q 042897 8 HGGGFC 13 (208)
Q Consensus 8 HGg~~~ 13 (208)
|||+|.
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 888874
No 229
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=90.80 E-value=0.39 Score=36.68 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.3
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+|.|.|||.||.+|..+..+.
T Consensus 273 Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 273 YPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred CCCceEEEeccccchHHHHHhcccc
Confidence 4457899999999999999888765
No 230
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=90.80 E-value=0.39 Score=36.68 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.3
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+|.|.|||.||.+|..+..+.
T Consensus 273 Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 273 YPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred CCCceEEEeccccchHHHHHhcccc
Confidence 4457899999999999999888765
No 231
>PF03283 PAE: Pectinacetylesterase
Probab=90.33 E-value=0.47 Score=37.84 Aligned_cols=41 Identities=27% Similarity=0.099 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...+++++++|.+..- -++++++|.|.|+||.-++..+-..
T Consensus 137 ~~i~~avl~~l~~~gl-----------~~a~~vlltG~SAGG~g~~~~~d~~ 177 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGL-----------PNAKQVLLTGCSAGGLGAILHADYV 177 (361)
T ss_pred HHHHHHHHHHHHHhcC-----------cccceEEEeccChHHHHHHHHHHHH
Confidence 4567889999988721 4568999999999999998766554
No 232
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=10 Score=30.23 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=47.5
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
+.+.+.+..|.+++ ..+++.+..++.|. +++-..+.+.-|.-.. ..-...+++...+|++.
T Consensus 227 ~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~--~v~s~~~~ds~H~~h~----r~~p~~y~~~~~~Fl~~ 289 (350)
T KOG2521|consen 227 NQLYLYSDNDDVLPADEIEKFIALRREKGV--NVKSVKFKDSEHVAHF----RSFPKTYLKKCSEFLRS 289 (350)
T ss_pred cceeecCCccccccHHHHHHHHHHHHhcCc--eEEEeeccCccceeee----ccCcHHHHHHHHHHHHh
Confidence 67777788998874 67888888999987 8988889888886433 22236788889999875
No 233
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=88.45 E-value=0.93 Score=34.78 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...+..++.+|.+.. ...++|+|+|+|-|++.|-.++...
T Consensus 74 ~~~I~~ay~~l~~~~------------~~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 74 EARIRDAYRFLSKNY------------EPGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred HHHHHHHHHHHHhcc------------CCcceEEEEecCccHHHHHHHHHHH
Confidence 456777888886654 3347899999999999998877544
No 234
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=88.09 E-value=1.5 Score=37.11 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=43.5
Q ss_pred CcEEEEeeCCCCChh---hHHHHHHHHHhc-CCCcceEEEEeCCCCcccccc--CC-----CCC---chHHHHHHHHHHH
Q 042897 139 DRVLVCVAEKDGLRN---RGVYYYETLKKS-EWHGKAEFYQTLGEDHCFHMF--NP-----KSK---NVGPFLQKLVNFI 204 (208)
Q Consensus 139 ~p~li~~G~~D~~~~---~~~~~~~~l~~~-g~~~~~~~~~~~~~~H~~~~~--~~-----~~~---~~~~~~~~i~~fl 204 (208)
+|++++||..|.++| .++.+....+.. |...+.++++++++.|. +-+ .+ ..+ -..+.++.+..+|
T Consensus 556 KPaIiVhGR~DaLlPvnh~Sr~Y~~ln~~~eG~~s~lrYyeV~naqHf-Daf~~~pG~~~r~VPlh~Y~~qALd~M~a~L 634 (690)
T PF10605_consen 556 KPAIIVHGRSDALLPVNHTSRPYLGLNRQVEGRASRLRYYEVTNAQHF-DAFLDFPGFDTRFVPLHPYFFQALDLMWAHL 634 (690)
T ss_pred CceEEEecccceecccCCCchHHHHHhhhhcccccceeEEEecCCeec-hhhccCCCCCcccccccHHHHHHHHHHHHHh
Confidence 499999999999875 456666655533 32247899999998884 322 11 111 1245666777777
Q ss_pred Hh
Q 042897 205 KS 206 (208)
Q Consensus 205 ~~ 206 (208)
+.
T Consensus 635 ~~ 636 (690)
T PF10605_consen 635 KS 636 (690)
T ss_pred hc
Confidence 75
No 235
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=87.54 E-value=0.54 Score=37.84 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=38.8
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNF 203 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~f 203 (208)
.++++.|++|+-....-.+ .+ | +.+..++..||++|+-.+..-..++..+....|.+|
T Consensus 353 rmlFVYG~nDPW~A~~f~l---~~--g-~~ds~v~~~PggnHga~I~~L~~~~r~~a~a~l~~W 410 (448)
T PF05576_consen 353 RMLFVYGENDPWSAEPFRL---GK--G-KRDSYVFTAPGGNHGARIAGLPEAERAEATARLRRW 410 (448)
T ss_pred eEEEEeCCCCCcccCcccc---CC--C-CcceEEEEcCCCcccccccCCCHHHHHHHHHHHHHH
Confidence 8999999999855322221 11 2 127788889999998666443344556677777777
No 236
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=86.37 E-value=2.9 Score=32.77 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=38.7
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCC----------------C--cc-eEEEEeCCCCccccccCCCCCchHHHHH
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEW----------------H--GK-AEFYQTLGEDHCFHMFNPKSKNVGPFLQ 198 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~----------------~--~~-~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 198 (208)
++||..|..|.+++ -++.+.+.|+-.+. + ++ .++..+-++||.- + .+.+..++
T Consensus 235 ~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~y~~~ltf~~V~~AGHmV----~--~qP~~al~ 308 (319)
T PLN02213 235 RSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRAYSNKMTFATIKAGGHTA----E--YRPNETFI 308 (319)
T ss_pred eEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEEecCcceEEEEcCCCCCC----C--cCHHHHHH
Confidence 79999999998775 34566666542110 0 01 4555666899953 2 14567788
Q ss_pred HHHHHHHh
Q 042897 199 KLVNFIKS 206 (208)
Q Consensus 199 ~i~~fl~~ 206 (208)
.+..||..
T Consensus 309 m~~~fi~~ 316 (319)
T PLN02213 309 MFQRWISG 316 (319)
T ss_pred HHHHHHcC
Confidence 88888864
No 237
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.61 E-value=3.3 Score=35.11 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=19.4
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+...|+-+||||||-++=.++...
T Consensus 524 ~~RPivwI~HSmGGLl~K~lLlda 547 (697)
T KOG2029|consen 524 DDRPIVWIGHSMGGLLAKKLLLDA 547 (697)
T ss_pred CCCceEEEecccchHHHHHHHHHH
Confidence 467889999999998887776654
No 238
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=84.94 E-value=2 Score=34.82 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=40.9
Q ss_pred cEEEEeeCCCCChhh-HHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNR-GVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~-~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|++|+.|+-|.+.++ ...+.+.+...|+ .+=.+..||.|+.... +..+.....++.+++||.+
T Consensus 191 P~VIv~gGlDs~qeD~~~l~~~~l~~rGi--A~LtvDmPG~G~s~~~--~l~~D~~~l~~aVLd~L~~ 254 (411)
T PF06500_consen 191 PTVIVCGGLDSLQEDLYRLFRDYLAPRGI--AMLTVDMPGQGESPKW--PLTQDSSRLHQAVLDYLAS 254 (411)
T ss_dssp EEEEEE--TTS-GGGGHHHHHCCCHHCT---EEEEE--TTSGGGTTT---S-S-CCHHHHHHHHHHHH
T ss_pred CEEEEeCCcchhHHHHHHHHHHHHHhCCC--EEEEEccCCCcccccC--CCCcCHHHHHHHHHHHHhc
Confidence 999999999998865 4556667888887 6667778888886432 2234456788999999875
No 239
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=84.34 E-value=1.6 Score=34.64 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=20.8
Q ss_pred CCCceEEeecChhHHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQLD 106 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~~ 106 (208)
..++|.|+|||+|+-+....+....
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~ 242 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELA 242 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHH
Confidence 3457999999999999998887653
No 240
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=83.71 E-value=5.2 Score=24.08 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHH
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
..+.+.+-++|++++..- -.+.++-|+|-|.|=.+|..++..
T Consensus 19 C~~~V~~qI~yvk~~~~~----------~GpK~VLViGaStGyGLAsRIa~a 60 (78)
T PF12242_consen 19 CARNVENQIEYVKSQGKI----------NGPKKVLVIGASTGYGLASRIAAA 60 (78)
T ss_dssp HHHHHHHHHHHHHHC-------------TS-SEEEEES-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCC----------CCCceEEEEecCCcccHHHHHHHH
Confidence 346777888888885432 235789999999999999877754
No 241
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.43 E-value=11 Score=28.93 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.5
Q ss_pred CCceEEeecChhHHHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..+..|+|-||||.+|-++...+
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~ 216 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLH 216 (371)
T ss_pred cccceeeeeecccHHHHhhcccC
Confidence 46899999999999998877644
No 242
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=80.90 E-value=8.9 Score=31.97 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=43.1
Q ss_pred HHHhCCcEEEEecCCCCCCC-----CCC-----------chhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecC
Q 042897 29 LVVKANIVAITIDYRLAPEH-----HLP-----------IAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGES 92 (208)
Q Consensus 29 ~~~~~g~~v~~~d~~~~~~~-----~~~-----------~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S 92 (208)
...++||.++.-|--..... .+. +.+.+...+-+.|.+.. ++..+++-+..|.|
T Consensus 54 ~~~~~G~A~~~TD~Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~----------Yg~~p~~sY~~GcS 123 (474)
T PF07519_consen 54 TALARGYATASTDSGHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAF----------YGKAPKYSYFSGCS 123 (474)
T ss_pred hhhhcCeEEEEecCCCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHH----------hCCCCCceEEEEeC
Confidence 34566999999995443221 111 11223333334444332 12567899999999
Q ss_pred hhHHHHHHHHHHHH
Q 042897 93 AGANIAHYVAVQLD 106 (208)
Q Consensus 93 ~GG~~a~~~~~~~~ 106 (208)
.||.-++..|.+++
T Consensus 124 ~GGRqgl~~AQryP 137 (474)
T PF07519_consen 124 TGGRQGLMAAQRYP 137 (474)
T ss_pred CCcchHHHHHHhCh
Confidence 99999999999983
No 243
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=80.79 E-value=3.4 Score=27.20 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=23.5
Q ss_pred CEEEEEcCCccccCC-C-------C----------CchhHHHHHHHHHhCCcEEEEe
Q 042897 2 PLLIHYHGGGFCLGS-A-------L----------DMPFKRFLTSLVVKANIVAITI 40 (208)
Q Consensus 2 P~vi~~HGg~~~~~~-~-------~----------~~~~~~~~~~~~~~~g~~v~~~ 40 (208)
-++||+||+-|.... . + +..........+.+.|+.|+.+
T Consensus 57 klaIfVDGcfWHgh~c~~~~~pk~n~~fW~~Ki~~n~~rD~~~~~~L~~~Gw~Vlr~ 113 (117)
T TIGR00632 57 RCVIFIHGCFWHGHHCYLGKVPKTRTDFWSPKIEKNVERDRRVNSRLQELGWRVLRV 113 (117)
T ss_pred CEEEEEcccccccCCcccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHCcCEEEEE
Confidence 478999998665211 0 0 0112233456778889999875
No 244
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=74.13 E-value=6 Score=29.02 Aligned_cols=113 Identities=13% Similarity=0.128 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHHHHHH-----hhhccCCCCCC-CCC---c
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQLDEMY-----AYMCPTSAGFE-EDP---I 124 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~~~~~-----~~~~~~~~~~~-~~~---~ 124 (208)
.+|...+++.+++....+ -....++++||..--+.....++-...+. ..++....+.+ .+. +
T Consensus 117 k~DYe~~v~aik~~~ppl---------~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~ 187 (265)
T COG4822 117 KNDYEICVEAIKDQIPPL---------NKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEY 187 (265)
T ss_pred hhhHHHHHHHHHHhcCCc---------CcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHH
Confidence 478888999998886433 23467899998666555544443321111 11111112220 000 1
Q ss_pred cCCCCCcccccCCCCcEEEEeeCC---CCChhhHHHHHHHHHhcCCCcceEEEEeCCCCc
Q 042897 125 LNPALDPNLKMMRSDRVLVCVAEK---DGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDH 181 (208)
Q Consensus 125 ~~~~~~~~~~~~~~~p~li~~G~~---D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H 181 (208)
+.......+.-+ |++++.|+. |...+....+...+.++|. +++.+. .|.|-
T Consensus 188 l~~~~~~~v~L~---PlMlvAG~Ha~nDMasddedswk~il~~~G~--~v~~~l-~GLGE 241 (265)
T COG4822 188 LRKNGIKEVHLI---PLMLVAGDHAKNDMASDDEDSWKNILEKNGF--KVEVYL-HGLGE 241 (265)
T ss_pred HHHcCCceEEEe---eeEEeechhhhhhhcccchHHHHHHHHhCCc--eeEEEe-ecCCC
Confidence 111122233322 799998874 5445667889999999998 776654 34443
No 245
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=72.99 E-value=27 Score=28.56 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=37.8
Q ss_pred cEEEEeeCCCCCh-hhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLR-NRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|+++++|..|... +.-..+.+.+.+.|. .++.++.-||+.....+.........+.+++|+.+
T Consensus 195 P~Vli~gG~~~~~~~~~~~~~~~La~~Gy----~vl~~D~pG~G~s~~~~~~~d~~~~~~avld~l~~ 258 (414)
T PRK05077 195 PTVLVCGGLDSLQTDYYRLFRDYLAPRGI----AMLTIDMPSVGFSSKWKLTQDSSLLHQAVLNALPN 258 (414)
T ss_pred cEEEEeCCcccchhhhHHHHHHHHHhCCC----EEEEECCCCCCCCCCCCccccHHHHHHHHHHHHHh
Confidence 8999999988654 344556777888876 44555544565432222112333445677888765
No 246
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=66.22 E-value=25 Score=27.27 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLA 45 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~ 45 (208)
.|.|+|.-|+++. .+.+++.||.|+.+|+...
T Consensus 252 vPmi~fakG~g~~-------------Le~l~~tG~DVvgLDWTvd 283 (359)
T KOG2872|consen 252 VPMILFAKGSGGA-------------LEELAQTGYDVVGLDWTVD 283 (359)
T ss_pred CceEEEEcCcchH-------------HHHHHhcCCcEEeeccccc
Confidence 3889999986642 2334566999999998654
No 247
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=65.82 E-value=52 Score=24.32 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=32.3
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCC---CchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKS---KNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~---~~~~~~~~~i~~fl~~ 206 (208)
|++++||.-......-..+...+.+.|. +++.++--||+........ -..+.+.+++.+++++
T Consensus 27 ~vl~~hG~~g~~~~~~~~~~~~l~~~g~----~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (288)
T TIGR01250 27 KLLLLHGGPGMSHEYLENLRELLKEEGR----EVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREK 92 (288)
T ss_pred eEEEEcCCCCccHHHHHHHHHHHHhcCC----EEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 8999999644333223345555665554 4555544455533211111 1235566666666553
No 248
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=63.70 E-value=12 Score=27.86 Aligned_cols=25 Identities=36% Similarity=0.194 Sum_probs=20.0
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+.++.-.+.|-|+|+.++..++...
T Consensus 26 i~~~~~~i~G~SAGAl~aa~~asg~ 50 (233)
T cd07224 26 VINETTPLAGASAGSLAAACSASGL 50 (233)
T ss_pred CCCCCCEEEEEcHHHHHHHHHHcCC
Confidence 4444568999999999999888754
No 249
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=63.66 E-value=20 Score=21.22 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEe
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITI 40 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 40 (208)
|.++++|||.- .| ......+.+.++|+.++..
T Consensus 32 ~~~~lvhGga~-~G------aD~iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 32 PDMVLVHGGAP-KG------ADRIAARWARERGVPVIRF 63 (71)
T ss_pred CCEEEEECCCC-CC------HHHHHHHHHHHCCCeeEEe
Confidence 67788998662 12 1344577888888876553
No 250
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=62.79 E-value=61 Score=24.27 Aligned_cols=39 Identities=8% Similarity=-0.042 Sum_probs=22.6
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 43 (208)
|.|+|+.=.+- ..+...|.......+.+.|+.|..++..
T Consensus 32 ~~v~fIPtAs~---~~~~~~y~~~~~~af~~lG~~v~~l~~~ 70 (233)
T PRK05282 32 RKAVFIPYAGV---TQSWDDYTAKVAEALAPLGIEVTGIHRV 70 (233)
T ss_pred CeEEEECCCCC---CCCHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 56677764221 1122234555667778889988877643
No 251
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=61.75 E-value=24 Score=22.61 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 154 RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
.+..|.+.++..|+ ++++... +.++ +.++-.+.+...+....+..|+..
T Consensus 12 ~AqaF~DYl~sqgI--~~~i~~~-~~~~-~~lwl~de~~~~~a~~el~~Fl~n 60 (101)
T PF12122_consen 12 AAQAFIDYLASQGI--ELQIEPE-GQGQ-FALWLHDEEHLEQAEQELEEFLQN 60 (101)
T ss_dssp HHHHHHHHHHHTT----EEEE-S-SSE---EEEES-GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCC--eEEEEEC-CCCc-eEEEEeCHHHHHHHHHHHHHHHHC
Confidence 56889999999988 7777763 3343 333333455667777788888763
No 252
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=61.62 E-value=17 Score=26.82 Aligned_cols=16 Identities=50% Similarity=0.410 Sum_probs=12.7
Q ss_pred CceEEeecChhHHHHH
Q 042897 84 GRVFLAGESAGANIAH 99 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~ 99 (208)
+-...+|+|+|+.++.
T Consensus 117 ~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 117 AGTPYIGWSAGANIAG 132 (224)
T ss_pred cCCceEEeccCceeec
Confidence 3466889999999874
No 253
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=61.33 E-value=43 Score=23.88 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=19.5
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMY 109 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~ 109 (208)
....++.+++.|.|+.-+.....+.+...
T Consensus 98 ~~~Kpv~~~~~s~g~~~~~~a~~~Lr~vl 126 (184)
T COG0431 98 LGGKPVLLLGTSGGGAGGLRAQNQLRPVL 126 (184)
T ss_pred hCCCcEEEEecCCCchhHHHHHHHHHHHH
Confidence 44567788888888877776665544433
No 254
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=61.00 E-value=35 Score=23.75 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
.|.|||+-| ..|+-.+ .....+...+.+.|..++.+|-
T Consensus 1 ~g~vIwltG---lsGsGKt-TlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 1 KGFVIWLTG---LSGSGKT-TLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp S-EEEEEES---STTSSHH-HHHHHHHHHHHHTTS-EEEEEH
T ss_pred CCEEEEEEC---CCCCCHH-HHHHHHHHHHHHcCCcEEEecC
Confidence 488999999 3333322 3456667777888999999984
No 255
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=60.88 E-value=29 Score=21.94 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=30.1
Q ss_pred HHHHHHhCCcE-EEEecCCCCCCCCCCc--hhhHHHHHHHHHHhhc
Q 042897 26 LTSLVVKANIV-AITIDYRLAPEHHLPI--AHEDSWAGLEWVASHS 68 (208)
Q Consensus 26 ~~~~~~~~g~~-v~~~d~~~~~~~~~~~--~~~d~~~~~~~l~~~~ 68 (208)
+...++..|.+ .+..+||+.....+.. .-+|...+++.+.+..
T Consensus 19 aiN~mad~GiTGFfl~eYrGvsPd~wkgf~~~EDpE~aik~i~D~s 64 (110)
T COG4075 19 AINIMADAGITGFFLHEYRGVSPDKWKGFSKEEDPESAIKAIRDLS 64 (110)
T ss_pred HHHHHHhcCcceEEEEEecCcChhHhcCcccccCHHHHHHHHHHhh
Confidence 34556777877 7889999865443332 3378899999888864
No 256
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=59.94 E-value=22 Score=27.45 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=34.5
Q ss_pred CcEEEEecCCCCCCC-CC----CchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHH
Q 042897 34 NIVAITIDYRLAPEH-HL----PIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 34 g~~v~~~d~~~~~~~-~~----~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~ 103 (208)
...+++..|-..|-. .| ....+-..+.++.+......+. .-+.-|++|.|.|.|+.-+.....
T Consensus 61 D~A~va~QYSylPSw~sfl~dr~~a~~a~~aL~~aV~~~~~~lP-------~~~RPkL~l~GeSLGa~g~~~af~ 128 (289)
T PF10081_consen 61 DVAIVAMQYSYLPSWLSFLVDRDAAREAARALFEAVYARWSTLP-------EDRRPKLYLYGESLGAYGGEAAFD 128 (289)
T ss_pred CeEEEEeccccccchHHHhcccchHHHHHHHHHHHHHHHHHhCC-------cccCCeEEEeccCccccchhhhhc
Confidence 678888888765421 11 1122222333333333322221 134578999999999988765443
No 257
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=59.47 E-value=19 Score=29.21 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=15.3
Q ss_pred CCceEEeecChhHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHY 100 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~ 100 (208)
.++|-.+|||.||.++-.
T Consensus 149 i~kISfvghSLGGLvar~ 166 (405)
T KOG4372|consen 149 IEKISFVGHSLGGLVARY 166 (405)
T ss_pred cceeeeeeeecCCeeeeE
Confidence 479999999999988754
No 258
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=58.66 E-value=63 Score=30.78 Aligned_cols=79 Identities=28% Similarity=0.161 Sum_probs=44.6
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHH-HHHHHHhhccCCCCCCcccCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWA-GLEWVASHSYGQGPEPLLNRH 80 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~-~~~~l~~~~~~~~~~~~~~~~ 80 (208)
|.++|+|. ..|. ...+..++++.-+..+.+.+.- ..-...++++.+ .++.+++..
T Consensus 2124 ~~~Ffv~p---IEG~------tt~l~~la~rle~PaYglQ~T~---~vP~dSies~A~~yirqirkvQ------------ 2179 (2376)
T KOG1202|consen 2124 PPLFFVHP---IEGF------TTALESLASRLEIPAYGLQCTE---AVPLDSIESLAAYYIRQIRKVQ------------ 2179 (2376)
T ss_pred CceEEEec---cccc------hHHHHHHHhhcCCcchhhhccc---cCCcchHHHHHHHHHHHHHhcC------------
Confidence 67888887 3332 2344666666555544444331 111123343332 344444421
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.....-|.|.|+|+.++..++...
T Consensus 2180 -P~GPYrl~GYSyG~~l~f~ma~~L 2203 (2376)
T KOG1202|consen 2180 -PEGPYRLAGYSYGACLAFEMASQL 2203 (2376)
T ss_pred -CCCCeeeeccchhHHHHHHHHHHH
Confidence 224667999999999999888766
No 259
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=58.14 E-value=54 Score=24.34 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCCceEEeecC-------hhH---HHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccC-CCCcEEEEeeCCCC
Q 042897 82 DFGRVFLAGES-------AGA---NIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMM-RSDRVLVCVAEKDG 150 (208)
Q Consensus 82 ~~~~i~l~G~S-------~GG---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~li~~G~~D~ 150 (208)
...+|+|+|.| .|| .+|=.+.++.+-..+++.+-.+.. .-.+.|........+ |. -+.|+.|.+|.
T Consensus 5 ~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysGynSRw--ALkvL~~ifp~~~s~~p~-lvtVffGaNDs 81 (245)
T KOG3035|consen 5 MRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSGYNSRW--ALKVLPEIFPKGSSIQPV-LVTVFFGANDS 81 (245)
T ss_pred ccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhcccccchhHH--HHHHhhhhccccccCCce-EEEEEecCccc
Confidence 44788888877 344 444444444443333333321111 111222222222333 22 46778899994
No 260
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=56.32 E-value=84 Score=23.63 Aligned_cols=61 Identities=8% Similarity=-0.073 Sum_probs=33.7
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|++++||--+... .-..+.+.+.+ ..+++.++--||+...........+.+.+.+.++++.
T Consensus 27 plvllHG~~~~~~-~w~~~~~~L~~-----~~~vi~~Dl~G~G~S~~~~~~~~~~~~~~~~~~~i~~ 87 (276)
T TIGR02240 27 PLLIFNGIGANLE-LVFPFIEALDP-----DLEVIAFDVPGVGGSSTPRHPYRFPGLAKLAARMLDY 87 (276)
T ss_pred cEEEEeCCCcchH-HHHHHHHHhcc-----CceEEEECCCCCCCCCCCCCcCcHHHHHHHHHHHHHH
Confidence 8999999654322 11333444432 3477777777887653221112334556666666654
No 261
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=54.92 E-value=1e+02 Score=24.21 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=41.9
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcccc-ccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFH-MFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~-~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
-++++||-.....-.-+.++..+.+.|. .++.++-.||+.. -.....+.-+.+++++..|+..
T Consensus 56 lv~~~HG~g~~~s~~~~~~a~~l~~~g~----~v~a~D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~ 119 (313)
T KOG1455|consen 56 LVFLCHGYGEHSSWRYQSTAKRLAKSGF----AVYAIDYEGHGRSDGLHAYVPSFDLVVDDVISFFDS 119 (313)
T ss_pred EEEEEcCCcccchhhHHHHHHHHHhCCC----eEEEeeccCCCcCCCCcccCCcHHHHHHHHHHHHHH
Confidence 5889999776544445667788888876 4444444455532 2234556667889999998874
No 262
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=54.63 E-value=79 Score=22.82 Aligned_cols=39 Identities=15% Similarity=0.142 Sum_probs=28.6
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 43 (208)
.|.+||+-| ..|+-.+ +....+.+.+.++|+.+..+|-.
T Consensus 22 ~~~viW~TG---LSGsGKS-TiA~ale~~L~~~G~~~y~LDGD 60 (197)
T COG0529 22 KGAVIWFTG---LSGSGKS-TIANALEEKLFAKGYHVYLLDGD 60 (197)
T ss_pred CCeEEEeec---CCCCCHH-HHHHHHHHHHHHcCCeEEEecCh
Confidence 378999999 4444333 35666778888889999999953
No 263
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=54.02 E-value=1.1e+02 Score=24.09 Aligned_cols=83 Identities=12% Similarity=0.005 Sum_probs=45.2
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCCCCCcccccCCCCcEEEEeeCCC---CChhhHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNPALDPNLKMMRSDRVLVCVAEKD---GLRNRGVY 157 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D---~~~~~~~~ 157 (208)
....++.|+|||-|+.+--+++.+... .. ......+....-+..+. -++++-|+.- ......+.
T Consensus 190 ~~~~~~~LiGFSKGcvVLNqll~El~~-----~~------~~~~~~~~~~~~l~~I~--~~~wLD~Gh~g~~~~w~T~~~ 256 (303)
T PF10561_consen 190 ISKPPLTLIGFSKGCVVLNQLLYELHY-----LE------ELARVDKEIERFLSRIS--DMYWLDGGHNGGSNTWITDEN 256 (303)
T ss_pred ccCCceEEEEecCcchHHHHHHHHHHh-----hh------cccCCchHHHHHHHhhh--eEEEeccCCCCCCCceecCHH
Confidence 566789999999999999888876430 00 00111111122234555 4666666443 11122244
Q ss_pred HHHHHHhcCCCcceEEEEeCC
Q 042897 158 YYETLKKSEWHGKAEFYQTLG 178 (208)
Q Consensus 158 ~~~~l~~~g~~~~~~~~~~~~ 178 (208)
..+.+.+.++ .+.++..|-
T Consensus 257 ~L~~l~~~~i--~i~vH~TPy 275 (303)
T PF10561_consen 257 VLKELAKLGI--RIHVHVTPY 275 (303)
T ss_pred HHHHHHhcCc--EEEEecCcc
Confidence 4455555565 666666653
No 264
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=53.99 E-value=16 Score=25.16 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 042897 24 RFLTSLVVKANIVAITIDYRL 44 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~ 44 (208)
..+.+.+.+.|+.|-.++...
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~ 23 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSD 23 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTS
T ss_pred HHHHHHHHHCCCEEEEEeccC
Confidence 445667788899988887654
No 265
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=53.91 E-value=30 Score=28.40 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=25.3
Q ss_pred CcEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCC
Q 042897 139 DRVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPK 189 (208)
Q Consensus 139 ~p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~ 189 (208)
+.+++++|+.|+-...+ ....... .+..+.+|+++|+.++..+.
T Consensus 377 tnviFtNG~~DPW~~lg-----v~~~~~~--~~~~~~I~g~~Hc~Dl~~~~ 420 (434)
T PF05577_consen 377 TNVIFTNGELDPWRALG-----VTSDSSD--SVPAIVIPGGAHCSDLYPPN 420 (434)
T ss_dssp -SEEEEEETT-CCGGGS-------S-SSS--SEEEEEETT--TTGGGS---
T ss_pred CeEEeeCCCCCCccccc-----CCCCCCC--CcccEEECCCeeeccccCCC
Confidence 37999999999966544 1112222 56667789999998876543
No 266
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=53.80 E-value=67 Score=25.82 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=46.5
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCC
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHAD 82 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (208)
.|||-|-.++..-+.. ......+-++++++|=.|++-=|+..-..+-...+.|+.+.++++++. ..
T Consensus 268 PVIFSHSsA~~vcns~-rNVPDdVL~llk~NgGvVMVnfy~~~isc~~~A~v~~v~~Hi~hIr~V-------------aG 333 (419)
T KOG4127|consen 268 PVIFSHSSAYSVCNSS-RNVPDDVLQLLKENGGVVMVNFYPGFISCSDRATVSDVADHINHIRAV-------------AG 333 (419)
T ss_pred ceEeecccHHHHhcCc-cCCcHHHHHHHhhcCCEEEEEeecccccCCCcccHHHHHHHHHHHHHh-------------hc
Confidence 4788898654332211 123455677777776555443344322233344589999999999986 34
Q ss_pred CCceEEeecChh
Q 042897 83 FGRVFLAGESAG 94 (208)
Q Consensus 83 ~~~i~l~G~S~G 94 (208)
.+.|+|.|.=-|
T Consensus 334 ~~hIGlGg~yDG 345 (419)
T KOG4127|consen 334 IDHIGLGGDYDG 345 (419)
T ss_pred cceeeccCCcCC
Confidence 678888764333
No 267
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=52.90 E-value=23 Score=25.24 Aligned_cols=20 Identities=40% Similarity=0.378 Sum_probs=17.1
Q ss_pred eEEeecChhHHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~~ 105 (208)
=.++|-|+||.+|..++...
T Consensus 29 d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 29 KRVAGTSAGAITAALLALGY 48 (194)
T ss_pred ceEEEECHHHHHHHHHHcCC
Confidence 57999999999998888743
No 268
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=52.76 E-value=24 Score=24.73 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=17.7
Q ss_pred ceEEeecChhHHHHHHHHHHH
Q 042897 85 RVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 85 ~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.-.+.|-|+|+.++..++...
T Consensus 27 ~d~v~GtSaGAi~aa~~a~g~ 47 (172)
T cd07198 27 IDIIAGTSAGAIVAALLASGR 47 (172)
T ss_pred CCEEEEECHHHHHHHHHHcCC
Confidence 456999999999999888754
No 269
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=52.05 E-value=12 Score=29.22 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.5
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
.|+|.|+||.+|+.++...
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 6999999999999988743
No 270
>PRK10824 glutaredoxin-4; Provisional
Probab=51.55 E-value=67 Score=21.09 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=44.9
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
|+|||+-|..-.... .|...+.+++.+.|...-.+|.... .++..++..+... -
T Consensus 16 ~Vvvf~Kg~~~~p~C----pyc~~ak~lL~~~~i~~~~idi~~d---------~~~~~~l~~~sg~-------------~ 69 (115)
T PRK10824 16 PILLYMKGSPKLPSC----GFSAQAVQALSACGERFAYVDILQN---------PDIRAELPKYANW-------------P 69 (115)
T ss_pred CEEEEECCCCCCCCC----chHHHHHHHHHHcCCCceEEEecCC---------HHHHHHHHHHhCC-------------C
Confidence 789999873211111 2456677888888844333332210 1344444333221 2
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....|+|-|..-||+--+..+.+.
T Consensus 70 TVPQIFI~G~~IGG~ddl~~l~~~ 93 (115)
T PRK10824 70 TFPQLWVDGELVGGCDIVIEMYQR 93 (115)
T ss_pred CCCeEEECCEEEcChHHHHHHHHC
Confidence 235899999999999877665543
No 271
>PRK06852 aldolase; Validated
Probab=50.67 E-value=1.1e+02 Score=24.06 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=29.6
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRL 44 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~ 44 (208)
+|+|++++.-|....+...........+++++.|..++-..|..
T Consensus 168 lPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~ 211 (304)
T PRK06852 168 LIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK 211 (304)
T ss_pred CcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC
Confidence 58888777644333222222356667888999999999988874
No 272
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=50.53 E-value=62 Score=23.98 Aligned_cols=21 Identities=10% Similarity=-0.149 Sum_probs=13.7
Q ss_pred HHHHHHHHHhCCcEEEEecCC
Q 042897 23 KRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 23 ~~~~~~~~~~~g~~v~~~d~~ 43 (208)
...+.+.+.+.|+.+-.+|.+
T Consensus 46 a~~~~~~~~~~g~~v~~idl~ 66 (219)
T TIGR02690 46 AEEAARLLGCEGRETRIFDPP 66 (219)
T ss_pred HHHHHHHHhhcCCEEEEeCcc
Confidence 455556666568888777754
No 273
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=49.38 E-value=26 Score=28.81 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.6
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
+|.|-|+|+.+|..+++..
T Consensus 104 vIsGTSaGAivAal~as~~ 122 (421)
T cd07230 104 IISGSSAGSIVAAILCTHT 122 (421)
T ss_pred EEEEECHHHHHHHHHHcCC
Confidence 7999999999998888754
No 274
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=49.38 E-value=82 Score=24.48 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=41.6
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccc--cCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHM--FNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~--~~~~~~~~~~~~~~i~~fl~~ 206 (208)
-++++||-.|.... -..+.+.+...|. .++.++--||+-.. .......-..+.+++..|++.
T Consensus 36 ~Vvl~HG~~Eh~~r-y~~la~~l~~~G~----~V~~~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~ 99 (298)
T COG2267 36 VVVLVHGLGEHSGR-YEELADDLAARGF----DVYALDLRGHGRSPRGQRGHVDSFADYVDDLDAFVET 99 (298)
T ss_pred EEEEecCchHHHHH-HHHHHHHHHhCCC----EEEEecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHH
Confidence 49999999986542 3447788888976 77777777887663 222333345666677777653
No 275
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=47.74 E-value=1.4e+02 Score=23.57 Aligned_cols=62 Identities=6% Similarity=-0.067 Sum_probs=35.0
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccC-CCCCchHHHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFN-PKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~~i~~fl~ 205 (208)
+++++||-.....-.-+.+...+.+.|. +++.++-.||+..-.. ......+.+.+++.+++.
T Consensus 89 ~iv~lHG~~~~~~~~~~~~~~~l~~~g~----~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~ 151 (349)
T PLN02385 89 AVCFCHGYGDTCTFFFEGIARKIASSGY----GVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYS 151 (349)
T ss_pred EEEEECCCCCccchHHHHHHHHHHhCCC----EEEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 7999999765432222456667776765 5555555577643211 111233556666766654
No 276
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=47.27 E-value=18 Score=26.60 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=18.6
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
++|.|+++|||-.+|..+....
T Consensus 57 ~~i~lvAWSmGVw~A~~~l~~~ 78 (213)
T PF04301_consen 57 REIYLVAWSMGVWAANRVLQGI 78 (213)
T ss_pred ceEEEEEEeHHHHHHHHHhccC
Confidence 6899999999999998876533
No 277
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=46.14 E-value=16 Score=28.43 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=15.4
Q ss_pred EEeecChhHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAV 103 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~ 103 (208)
.++|-|+||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 58999999999998876
No 278
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=45.88 E-value=38 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.4
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
.+.|-|+|+.++..++...
T Consensus 31 ~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 31 AISGTSAGALVGGLFASGI 49 (221)
T ss_pred EEEEeCHHHHHHHHHHcCC
Confidence 6999999999999888643
No 279
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=45.71 E-value=38 Score=23.69 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=25.1
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++||++..++|+............+...+.+.|+.++.+..
T Consensus 31 ~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~ 71 (173)
T cd03015 31 WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVST 71 (173)
T ss_pred EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 67888887777766554222222233444567888888863
No 280
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=45.68 E-value=29 Score=27.54 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=14.5
Q ss_pred CceEEeecChhHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~ 102 (208)
+.=.++|-|.|++.+..+-
T Consensus 303 eeGll~G~SSGan~~aAl~ 321 (362)
T KOG1252|consen 303 EEGLLVGISSGANVAAALK 321 (362)
T ss_pred hhCeeecccchHHHHHHHH
Confidence 4567999999999875443
No 281
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=45.38 E-value=39 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.5
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
.++|-|+|+.+|..++...
T Consensus 31 ~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 31 IVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred EEEEECHHHHHHHHHHcCC
Confidence 7999999999999888643
No 282
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=45.33 E-value=38 Score=24.34 Aligned_cols=41 Identities=5% Similarity=-0.053 Sum_probs=26.8
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID 41 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d 41 (208)
.++||+++.+.|+................+.+.|+.|+.+.
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS 72 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVS 72 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 36889999888887766432222223444566788888886
No 283
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=45.02 E-value=82 Score=23.54 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=34.3
Q ss_pred EEEEcCCccccCCCCCchh--HHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhh
Q 042897 4 LIHYHGGGFCLGSALDMPF--KRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASH 67 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~--~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~ 67 (208)
+.++|-.++....+..... ...+.+.+...|+.++.+| ++......+...+++++..+.
T Consensus 116 LpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VD-----G~D~~av~~~~a~a~~~~~~~ 176 (227)
T cd02011 116 LPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVE-----GDDPETMHQAMAATLDWAIEE 176 (227)
T ss_pred EEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEEC-----CCCHHHHHHHHHHHHHHHHHH
Confidence 4555666666655543221 3456778888899999988 234444444455555554443
No 284
>PRK10279 hypothetical protein; Provisional
Probab=44.93 E-value=35 Score=26.63 Aligned_cols=20 Identities=25% Similarity=0.208 Sum_probs=16.6
Q ss_pred ceEEeecChhHHHHHHHHHH
Q 042897 85 RVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 85 ~i~l~G~S~GG~~a~~~~~~ 104 (208)
--.|+|-|+|+.++..++..
T Consensus 34 ~d~i~GtS~GAlvga~yA~g 53 (300)
T PRK10279 34 IDIVAGCSIGSLVGAAYACD 53 (300)
T ss_pred cCEEEEEcHHHHHHHHHHcC
Confidence 35699999999999888753
No 285
>PRK13599 putative peroxiredoxin; Provisional
Probab=44.66 E-value=39 Score=24.86 Aligned_cols=41 Identities=10% Similarity=-0.035 Sum_probs=28.1
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++|||.|-+.|+............+...+.++|+.|+.+..
T Consensus 30 ~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~ 70 (215)
T PRK13599 30 WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSV 70 (215)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 57889999999888775432233334555667999888863
No 286
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=43.69 E-value=38 Score=24.56 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=27.4
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 43 (208)
++|||.|-+.|+............+...+.++|+.|+.+...
T Consensus 27 ~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 27 WGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 578889998888776643222233344556779888888643
No 287
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=43.39 E-value=93 Score=24.78 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.6
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.+..+.+|.-.|+||-+|..++...
T Consensus 119 ~~t~P~~If~ESYGGKma~k~al~l 143 (414)
T KOG1283|consen 119 FKTVPLYIFCESYGGKMAAKFALEL 143 (414)
T ss_pred ccccceEEEEhhcccchhhhhhhhH
Confidence 6678899999999999999998877
No 288
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=43.22 E-value=1.1e+02 Score=21.27 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=32.9
Q ss_pred EEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCC--CCCchHHHHHHHHHHHHhc
Q 042897 141 VLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNP--KSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 141 ~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~~i~~fl~~~ 207 (208)
++++||--.... .-..+.+.+. .|. ++-...++ ||+...... .....++..+++.+++++.
T Consensus 1 vv~~hG~~~~~~-~~~~~~~~l~-~~~--~v~~~d~~--G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~ 63 (228)
T PF12697_consen 1 VVFLHGFGGSSE-SWDPLAEALA-RGY--RVIAFDLP--GHGRSDPPPDYSPYSIEDYAEDLAELLDAL 63 (228)
T ss_dssp EEEE-STTTTGG-GGHHHHHHHH-TTS--EEEEEECT--TSTTSSSHSSGSGGSHHHHHHHHHHHHHHT
T ss_pred eEEECCCCCCHH-HHHHHHHHHh-CCC--EEEEEecC--CccccccccccCCcchhhhhhhhhhccccc
Confidence 578888876542 2344666673 554 44444455 555332111 1223456777888888753
No 289
>PRK13191 putative peroxiredoxin; Provisional
Probab=43.22 E-value=41 Score=24.73 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=28.7
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 43 (208)
++|||.|-+.|+................+.++|..|+.+...
T Consensus 35 ~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D 76 (215)
T PRK13191 35 WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD 76 (215)
T ss_pred cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 578889998888877654322333445556679998888743
No 290
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=43.21 E-value=14 Score=27.97 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.2
Q ss_pred CCCCceEEeecChhHH
Q 042897 81 ADFGRVFLAGESAGAN 96 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~ 96 (208)
-+...|+++|||.|..
T Consensus 232 ~~i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 232 SDIDEIIIYGHSLGEV 247 (270)
T ss_pred cCCCEEEEEeCCCchh
Confidence 3558999999999874
No 291
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.76 E-value=50 Score=27.92 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=20.2
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
...++|.|+|||.|+-+....+...
T Consensus 444 qG~RPVTLVGFSLGARvIf~CL~~L 468 (633)
T KOG2385|consen 444 QGNRPVTLVGFSLGARVIFECLLEL 468 (633)
T ss_pred cCCCceeEeeeccchHHHHHHHHHH
Confidence 4457899999999999988766644
No 292
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=42.13 E-value=59 Score=22.01 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCcEEEEecCC
Q 042897 23 KRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 23 ~~~~~~~~~~~g~~v~~~d~~ 43 (208)
...+.+++...||.|..+|-|
T Consensus 10 a~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 10 ARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp HHHHHHHHHHCTEEEEEEES-
T ss_pred HHHHHHHHHhCCCEEEEEcCC
Confidence 566789999999999999988
No 293
>PRK15000 peroxidase; Provisional
Probab=42.04 E-value=45 Score=24.22 Aligned_cols=41 Identities=5% Similarity=0.057 Sum_probs=26.9
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++||+++.+.|+................+.++|+.|+.+..
T Consensus 36 ~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~ 76 (200)
T PRK15000 36 TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSF 76 (200)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 68999998888776664322223334455667988888863
No 294
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=41.83 E-value=16 Score=21.01 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=4.8
Q ss_pred CCEEEEEcC
Q 042897 1 LPLLIHYHG 9 (208)
Q Consensus 1 ~P~vi~~HG 9 (208)
+|+|++.||
T Consensus 43 k~pVll~HG 51 (63)
T PF04083_consen 43 KPPVLLQHG 51 (63)
T ss_dssp --EEEEE--
T ss_pred CCcEEEECC
Confidence 589999999
No 295
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=41.73 E-value=85 Score=20.33 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=39.9
Q ss_pred HHHHHHhCCcE-EEEecCCCCCCCCCCc--hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHH
Q 042897 26 LTSLVVKANIV-AITIDYRLAPEHHLPI--AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIA 98 (208)
Q Consensus 26 ~~~~~~~~g~~-v~~~d~~~~~~~~~~~--~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a 98 (208)
+...+.+.|++ .+..+|++.....+.. .-+|-..+++.+.+.. ++.+++|.=..--.+
T Consensus 19 aINaLte~GITGFyl~eYkGmSP~~wkgf~l~EDpe~ai~~I~d~s---------------~~aV~I~TVV~~~~~ 79 (110)
T PF10126_consen 19 AINALTEGGITGFYLHEYKGMSPQDWKGFLLDEDPEMAIKAINDLS---------------ENAVLIGTVVDEEKV 79 (110)
T ss_pred HHHHHHhcCccEEEeEeecCCChHHhcCcccccCHHHHHHHHHHhc---------------cCcEEEEEEECHHHH
Confidence 34556777877 7888999876555554 3589999999998864 466677655444433
No 296
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=41.59 E-value=23 Score=24.92 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.0
Q ss_pred eEEeecChhHHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~~ 105 (208)
=.+.|-|+|+.+|..++...
T Consensus 30 d~i~GtSaGAi~aa~~a~g~ 49 (175)
T cd07228 30 DIIAGSSIGALVGALYAAGH 49 (175)
T ss_pred eEEEEeCHHHHHHHHHHcCC
Confidence 46999999999998888754
No 297
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=41.52 E-value=46 Score=25.09 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=16.0
Q ss_pred EeecChhHHHHHHHHHHH
Q 042897 88 LAGESAGANIAHYVAVQL 105 (208)
Q Consensus 88 l~G~S~GG~~a~~~~~~~ 105 (208)
+.|-|+|+.+|..++...
T Consensus 34 i~GtSAGAl~aa~~a~g~ 51 (245)
T cd07218 34 ISGASAGALAACCLLCDL 51 (245)
T ss_pred EEEEcHHHHHHHHHHhCC
Confidence 999999999999888753
No 298
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=41.32 E-value=46 Score=24.38 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=17.0
Q ss_pred eEEeecChhHHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~~ 105 (208)
=.+.|-|+|+.+|+.++...
T Consensus 28 d~i~GtS~GAl~aa~~a~~~ 47 (215)
T cd07209 28 DIISGTSIGAINGALIAGGD 47 (215)
T ss_pred CEEEEECHHHHHHHHHHcCC
Confidence 37999999999999888754
No 299
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=41.12 E-value=44 Score=22.41 Aligned_cols=11 Identities=36% Similarity=0.803 Sum_probs=9.2
Q ss_pred CCEEEEEcCCc
Q 042897 1 LPLLIHYHGGG 11 (208)
Q Consensus 1 ~P~vi~~HGg~ 11 (208)
.|+|+-+||..
T Consensus 52 KpLVlSfHG~t 62 (127)
T PF06309_consen 52 KPLVLSFHGWT 62 (127)
T ss_pred CCEEEEeecCC
Confidence 59999999944
No 300
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=40.68 E-value=51 Score=25.26 Aligned_cols=19 Identities=37% Similarity=0.329 Sum_probs=15.4
Q ss_pred ceEEeecChhHHHHHHHHH
Q 042897 85 RVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 85 ~i~l~G~S~GG~~a~~~~~ 103 (208)
.-+++|||.|-..|+.++.
T Consensus 83 p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 83 PDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred ccEEEecCHHHHHHHHHhC
Confidence 4589999999999877654
No 301
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=40.50 E-value=1.1e+02 Score=23.98 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=20.4
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+.+|.|.|.||+.+-.+|.+.
T Consensus 48 ~~~~~fyI~GESYaG~YiP~la~~I 72 (319)
T PLN02213 48 YFSNPLYVVGDSYSGMIVPALVQEI 72 (319)
T ss_pred cccCCeEEEeeccccchHHHHHHHH
Confidence 5678899999999999877776643
No 302
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=40.13 E-value=46 Score=21.89 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHH
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAH 99 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~ 99 (208)
++.+.++|.... ...+.|+|+|||--|.+..
T Consensus 44 ~~~~sl~~av~~-------------l~v~~ivV~gHt~CG~v~a 74 (119)
T cd00382 44 DVLASLEYAVEV-------------LGVKHIIVCGHTDCGAVKA 74 (119)
T ss_pred cHHHHHHHHHHh-------------hCCCEEEEEccCCCcHHHH
Confidence 567777777665 5568999999988777654
No 303
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=40.13 E-value=20 Score=27.99 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.4
Q ss_pred EEeecChhHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAV 103 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~ 103 (208)
.|+|-|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 79999999999998874
No 304
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=39.83 E-value=26 Score=27.05 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=16.8
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
.++|-|+||.+|+.++...
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 7999999999999988754
No 305
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=39.64 E-value=49 Score=24.85 Aligned_cols=20 Identities=40% Similarity=0.401 Sum_probs=17.2
Q ss_pred eEEeecChhHHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~~ 105 (208)
-.+.|-|+|+.++..++...
T Consensus 33 ~~i~GtSAGAl~aa~~a~g~ 52 (243)
T cd07204 33 RRIAGASAGAIVAAVVLCGV 52 (243)
T ss_pred CEEEEEcHHHHHHHHHHhCC
Confidence 37999999999999888754
No 306
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=39.55 E-value=65 Score=26.13 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.5
Q ss_pred cEEEEeeCCCCC-h-hhHHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 140 RVLVCVAEKDGL-R-NRGVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 140 p~li~~G~~D~~-~-~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
|-+|+.|..|.+ + |.+..+++.|.. ...+.+.|+..|...
T Consensus 331 pKyivnaSgDdff~pDsa~lYyd~LPG-----~kaLrmvPN~~H~~~ 372 (507)
T COG4287 331 PKYIVNASGDDFFVPDSANLYYDDLPG-----EKALRMVPNDPHNLI 372 (507)
T ss_pred cceeecccCCcccCCCccceeeccCCC-----ceeeeeCCCCcchhh
Confidence 778888888774 4 466777887764 457888999999543
No 307
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=39.55 E-value=1.8e+02 Score=22.58 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=34.9
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccC-CCCCchHHHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFN-PKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~~~~~i~~fl~ 205 (208)
.++++||-.....-..+.+...+.+.|. +++.++--||+..... ......+...+++..+++
T Consensus 61 ~VvllHG~~~~~~~~~~~~~~~L~~~Gy----~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~ 123 (330)
T PLN02298 61 LIFMVHGYGNDISWTFQSTAIFLAQMGF----ACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFN 123 (330)
T ss_pred EEEEEcCCCCCcceehhHHHHHHHhCCC----EEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 3899999864322123445566777755 6666666678754311 112234555666666654
No 308
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=39.42 E-value=25 Score=27.98 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=16.0
Q ss_pred EEeecChhHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~ 104 (208)
.+.|-|+||.+|+.++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 699999999999998863
No 309
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=39.26 E-value=8.6 Score=13.43 Aligned_cols=6 Identities=50% Similarity=0.601 Sum_probs=2.6
Q ss_pred ecChhH
Q 042897 90 GESAGA 95 (208)
Q Consensus 90 G~S~GG 95 (208)
|+|+||
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 344444
No 310
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=38.81 E-value=39 Score=26.38 Aligned_cols=43 Identities=21% Similarity=0.043 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 154 RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
..+.+.+.+++.|+ .++........|.-.+ +...+.+.++++.
T Consensus 167 ~l~~~~~~l~~~~~--~~~~l~v~~afHs~~m--------~~~~~~~~~~l~~ 209 (318)
T PF00698_consen 167 ALEALVERLKAEGI--KAKRLPVSYAFHSPLM--------EPAADEFREALES 209 (318)
T ss_dssp HHHHHHHHHHHTTS--EEEEESSSSETTSGGG--------HHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccce--eEEEeeeeccccCchh--------hhhHHHHHhhhhc
Confidence 56778888999976 6666666666674332 4455556665543
No 311
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=38.72 E-value=44 Score=23.51 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecCh
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESA 93 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~ 93 (208)
++.++++.|.+... ..+..++++|.|.
T Consensus 2 q~~~~~~El~~~a~-----------l~~g~i~VvGcST 28 (172)
T PF04260_consen 2 QLRQALEELLEQAN-----------LKPGQIFVVGCST 28 (172)
T ss_dssp -HHHHHHHHHHHS--------------TT-EEEEEE-H
T ss_pred hHHHHHHHHHHhcC-----------CCCCCEEEEeeeH
Confidence 45566666666543 7788999999996
No 312
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=37.94 E-value=96 Score=21.33 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=25.4
Q ss_pred CEEEEEcCCccccCCCCC-chhHHHHHHHHHhCCc-EEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALD-MPFKRFLTSLVVKANI-VAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~-~~~~~~~~~~~~~~g~-~v~~~d~ 42 (208)
|+||+++-+.|+...... ..........+.++|. .|+.+..
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~ 73 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSV 73 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEEC
Confidence 688888888888876643 2112222344566688 4777653
No 313
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=37.86 E-value=49 Score=24.88 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=15.4
Q ss_pred EEeecChhHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAV 103 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~ 103 (208)
.+.|-|+|+.++..++.
T Consensus 34 ~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 34 RFAGASAGSLVAAVLLT 50 (246)
T ss_pred EEEEECHHHHHHHHHhc
Confidence 69999999999998874
No 314
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=37.83 E-value=48 Score=23.65 Aligned_cols=40 Identities=5% Similarity=-0.018 Sum_probs=24.2
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID 41 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d 41 (208)
|+||++..+.|+................+.+.|+.|+.+.
T Consensus 33 ~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS 72 (187)
T TIGR03137 33 WSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVS 72 (187)
T ss_pred EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 6788888777777665432112222334455688888886
No 315
>PRK03592 haloalkane dehalogenase; Provisional
Probab=37.71 E-value=1.8e+02 Score=22.05 Aligned_cols=61 Identities=3% Similarity=-0.203 Sum_probs=36.2
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|++++||--.... .-+.+...|.+.+ +++.++-.||+..-.....-..+...+++.+++++
T Consensus 29 ~vvllHG~~~~~~-~w~~~~~~L~~~~-----~via~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~~ 89 (295)
T PRK03592 29 PIVFLHGNPTSSY-LWRNIIPHLAGLG-----RCLAPDLIGMGASDKPDIDYTFADHARYLDAWFDA 89 (295)
T ss_pred EEEEECCCCCCHH-HHHHHHHHHhhCC-----EEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 8999999754322 2234555665542 67777666787653222112345666777777764
No 316
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=37.56 E-value=23 Score=28.23 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=15.7
Q ss_pred EEeecChhHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAV 103 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~ 103 (208)
.|+|-|.||.+|+.++.
T Consensus 46 liaGTStGgiiA~~la~ 62 (349)
T cd07214 46 VIAGTSTGGLITAMLTA 62 (349)
T ss_pred EEeeCCHHHHHHHHHhc
Confidence 68999999999999886
No 317
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=36.95 E-value=61 Score=24.90 Aligned_cols=20 Identities=35% Similarity=0.212 Sum_probs=16.3
Q ss_pred CceEEeecChhHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~ 103 (208)
....++|||+|=..|+.++.
T Consensus 76 ~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 76 RPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred CCcEEeecCHHHHHHHHHhC
Confidence 45689999999988887664
No 318
>PRK00870 haloalkane dehalogenase; Provisional
Probab=36.87 E-value=1.9e+02 Score=22.07 Aligned_cols=62 Identities=6% Similarity=-0.139 Sum_probs=33.7
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCC--CCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNP--KSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~--~~~~~~~~~~~i~~fl~~ 206 (208)
|++++||--.... .-..+...|.+.|. +++.++-.||+..-... ..-..++..+.+.+++++
T Consensus 48 ~lvliHG~~~~~~-~w~~~~~~L~~~gy----~vi~~Dl~G~G~S~~~~~~~~~~~~~~a~~l~~~l~~ 111 (302)
T PRK00870 48 PVLLLHGEPSWSY-LYRKMIPILAAAGH----RVIAPDLIGFGRSDKPTRREDYTYARHVEWMRSWFEQ 111 (302)
T ss_pred EEEEECCCCCchh-hHHHHHHHHHhCCC----EEEEECCCCCCCCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 8999999643221 22445566765554 55555555666442111 111235667777777764
No 319
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=36.86 E-value=29 Score=26.21 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=16.4
Q ss_pred EEeecChhHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~ 104 (208)
.++|-|.||.+|+.++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 589999999999998886
No 320
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=36.82 E-value=32 Score=26.09 Aligned_cols=19 Identities=32% Similarity=0.165 Sum_probs=16.8
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
.++|-|+|+.++..+++..
T Consensus 30 ~i~GtSaGAi~a~~~~~g~ 48 (266)
T cd07208 30 LVIGVSAGALNAASYLSGQ 48 (266)
T ss_pred EEEEECHHHHhHHHHHhCC
Confidence 6999999999999888764
No 321
>PLN02578 hydrolase
Probab=36.62 E-value=2e+02 Score=22.80 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=33.8
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|++++||--..... -......+. . +.+++.++-.||+..-.....-....+.+.+.+|+++
T Consensus 88 ~vvliHG~~~~~~~-w~~~~~~l~-~----~~~v~~~D~~G~G~S~~~~~~~~~~~~a~~l~~~i~~ 148 (354)
T PLN02578 88 PIVLIHGFGASAFH-WRYNIPELA-K----KYKVYALDLLGFGWSDKALIEYDAMVWRDQVADFVKE 148 (354)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHh-c----CCEEEEECCCCCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 89999997664221 122233343 2 3467777767787543222112334556678888765
No 322
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=36.59 E-value=32 Score=23.88 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=16.4
Q ss_pred CceEEeecChhHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~ 104 (208)
.--.|+|-|.||.+|+.++..
T Consensus 27 ~~d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 27 RFDVISGTSAGALNAALLALG 47 (204)
T ss_dssp T-SEEEEECCHHHHHHHHHTC
T ss_pred CccEEEEcChhhhhHHHHHhC
Confidence 334699999999999877764
No 323
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=36.57 E-value=57 Score=25.39 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=18.5
Q ss_pred CceEEeecChhHHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
..-+|.|.|+|+.++..+|...
T Consensus 39 ~~~~iaGtS~GAiva~l~A~g~ 60 (306)
T COG1752 39 PIDVIAGTSAGAIVAALYAAGM 60 (306)
T ss_pred CccEEEecCHHHHHHHHHHcCC
Confidence 4557999999999999988853
No 324
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=36.41 E-value=57 Score=25.51 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.4
Q ss_pred eEEeecChhHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~ 104 (208)
=.|+|-|+|+.++..++..
T Consensus 45 d~v~GtSaGAi~ga~ya~g 63 (306)
T cd07225 45 DMVGGTSIGAFIGALYAEE 63 (306)
T ss_pred CEEEEECHHHHHHHHHHcC
Confidence 3689999999999988865
No 325
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=36.32 E-value=57 Score=23.32 Aligned_cols=34 Identities=6% Similarity=0.196 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
+..++++|.... .....|+|+|||-=|.+...+.
T Consensus 66 ~~~asleyAv~~-------------L~v~~IvV~GHs~CGav~a~~~ 99 (182)
T cd00883 66 NCLSVLQYAVDV-------------LKVKHIIVCGHYGCGGVKAALT 99 (182)
T ss_pred chhhhHHHHHHh-------------cCCCEEEEecCCCchHHHHHHc
Confidence 467788887765 5568999999999887776543
No 326
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=36.30 E-value=1.1e+02 Score=24.39 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=8.7
Q ss_pred EEEEEcCCcccc
Q 042897 3 LLIHYHGGGFCL 14 (208)
Q Consensus 3 ~vi~~HGg~~~~ 14 (208)
.++++||..++.
T Consensus 20 aVpIlHGPsGCa 31 (352)
T TIGR03282 20 DVIILHGPSGCC 31 (352)
T ss_pred CEEEEECchhhh
Confidence 468899976554
No 327
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=36.02 E-value=22 Score=23.94 Aligned_cols=13 Identities=23% Similarity=0.143 Sum_probs=10.0
Q ss_pred CEEEEEcCCcccc
Q 042897 2 PLLIHYHGGGFCL 14 (208)
Q Consensus 2 P~vi~~HGg~~~~ 14 (208)
-++||+||+-|..
T Consensus 58 ~~viFvHGCFWh~ 70 (150)
T COG3727 58 RCVIFVHGCFWHG 70 (150)
T ss_pred eEEEEEeeeeccC
Confidence 4789999987654
No 328
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=35.78 E-value=1.2e+02 Score=24.56 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCcEEEEecCC----CC----------CCCCCCchhhHHHHHHHHHHhhc
Q 042897 23 KRFLTSLVVKANIVAITIDYR----LA----------PEHHLPIAHEDSWAGLEWVASHS 68 (208)
Q Consensus 23 ~~~~~~~~~~~g~~v~~~d~~----~~----------~~~~~~~~~~d~~~~~~~l~~~~ 68 (208)
.-++++.+.+.|++|++++-. .+ .+.+.+..++=...+.++|++-.
T Consensus 102 AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ 161 (509)
T KOG2853|consen 102 AFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAR 161 (509)
T ss_pred HHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHH
Confidence 345688888889999999732 11 23344555554455556665443
No 329
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=35.77 E-value=1.5e+02 Score=24.80 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=38.7
Q ss_pred cEEEEeeCCCCChh--hHHHHHHHHHhcCC-------------C------cceEEEEeCCCCccccccCCCCCchHHHHH
Q 042897 140 RVLVCVAEKDGLRN--RGVYYYETLKKSEW-------------H------GKAEFYQTLGEDHCFHMFNPKSKNVGPFLQ 198 (208)
Q Consensus 140 p~li~~G~~D~~~~--~~~~~~~~l~~~g~-------------~------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~ 198 (208)
+++|..|+.|.+++ .++.+.+.|.-... . .+.++.++.|+||.-+... .+..+.
T Consensus 365 rvliysGD~D~~~p~~gt~~~i~~L~~~~~~~~~pW~~~~~qvaG~~~~Y~~ltf~tVrGaGH~VP~~~-----p~~al~ 439 (454)
T KOG1282|consen 365 RVLIYSGDHDLVVPFLGTQAWIKSLNLSITDEWRPWYHKGGQVAGYTKTYGGLTFATVRGAGHMVPYDK-----PESALI 439 (454)
T ss_pred EEEEEeCCcceeCcchhhHHHHHhccCccccCccCCccCCCceeeeEEEecCEEEEEEeCCcccCCCCC-----cHHHHH
Confidence 79999999998776 33444333321100 0 0134566779999644433 356778
Q ss_pred HHHHHHHhc
Q 042897 199 KLVNFIKST 207 (208)
Q Consensus 199 ~i~~fl~~~ 207 (208)
.+..||..+
T Consensus 440 m~~~fl~g~ 448 (454)
T KOG1282|consen 440 MFQRFLNGQ 448 (454)
T ss_pred HHHHHHcCC
Confidence 888888653
No 330
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=35.76 E-value=59 Score=25.54 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=18.7
Q ss_pred CCCceEEeecChhHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
.....++.|||.|=+.|+.++..
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag~ 105 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAGV 105 (310)
T ss_pred CCCCceeecccHhHHHHHHHccc
Confidence 34667999999999999887763
No 331
>PLN03006 carbonate dehydratase
Probab=35.56 E-value=53 Score=25.64 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHH
Q 042897 57 SWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYV 101 (208)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~ 101 (208)
+.++++|.... .....|+|+|||.=|.+...+
T Consensus 158 ~~aSLEYAV~~-------------L~V~~IVV~GHs~CGaV~Aal 189 (301)
T PLN03006 158 TKAALEFSVNT-------------LNVENILVIGHSRCGGIQALM 189 (301)
T ss_pred hhhhHHHHHHH-------------hCCCEEEEecCCCchHHHHHh
Confidence 56788888776 556899999999988777544
No 332
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=35.35 E-value=62 Score=22.78 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecCh
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESA 93 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~ 93 (208)
++..+++.+.+... +....++++|.|.
T Consensus 2 ~~~~~~~El~~~a~-----------l~~g~i~VvGcST 28 (172)
T TIGR01440 2 QLTTVLEELKDASN-----------LKKGDLFVIGCST 28 (172)
T ss_pred hHHHHHHHHHHhhC-----------CCCCCEEEEecch
Confidence 44556666665543 7789999999995
No 333
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=35.07 E-value=2e+02 Score=21.79 Aligned_cols=40 Identities=13% Similarity=-0.039 Sum_probs=26.1
Q ss_pred cEEEEeeCCCCCh---hhHHHHHHHHHhcCCCcceEEEEeCCCCccc
Q 042897 140 RVLVCVAEKDGLR---NRGVYYYETLKKSEWHGKAEFYQTLGEDHCF 183 (208)
Q Consensus 140 p~li~~G~~D~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~ 183 (208)
+++++||..+... .....+.+.+.+.|. .++.++=-||+-
T Consensus 28 ~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~----~v~~~Dl~G~G~ 70 (274)
T TIGR03100 28 GVLIVVGGPQYRVGSHRQFVLLARRLAEAGF----PVLRFDYRGMGD 70 (274)
T ss_pred eEEEEeCCccccCCchhHHHHHHHHHHHCCC----EEEEeCCCCCCC
Confidence 7899999887643 234567788888866 444444446653
No 334
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=34.55 E-value=78 Score=21.78 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=16.2
Q ss_pred CceEEeecChhHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~ 102 (208)
.--.+.|-|+|+.++..++
T Consensus 28 ~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 28 CVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred CCCEEEEEcHHHHHHHHHh
Confidence 3457899999999998888
No 335
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=34.47 E-value=81 Score=17.30 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCcEEEEecCC
Q 042897 23 KRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 23 ~~~~~~~~~~~g~~v~~~d~~ 43 (208)
...-.+++...||.|+.+.|.
T Consensus 20 t~lk~r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 20 TKLKHRHLKALGYKVISIPYY 40 (58)
T ss_pred HHHHHHHHHHCCCEEEEecHH
Confidence 344468889999999999875
No 336
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=34.21 E-value=23 Score=29.64 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.4
Q ss_pred ceEEeecChhHHHHHHHHHHH
Q 042897 85 RVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 85 ~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+=+|.|.|+||.+|..++.+.
T Consensus 203 P~IIsGsS~GaivAsl~~v~~ 223 (543)
T KOG2214|consen 203 PNIISGSSAGAIVASLVGVRS 223 (543)
T ss_pred chhhcCCchhHHHHHHHhhcc
Confidence 457899999999999988877
No 337
>PRK13690 hypothetical protein; Provisional
Probab=34.02 E-value=59 Score=23.16 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecCh
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESA 93 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~ 93 (208)
..++...+++.+.+... +.+..++++|.|.
T Consensus 6 i~~~~~~~~~El~~~a~-----------l~~g~i~VvGcST 35 (184)
T PRK13690 6 IKKQTRQILEELLEQAN-----------LKPGQIFVLGCST 35 (184)
T ss_pred HHHHHHHHHHHHHHhhC-----------CCCCCEEEEecch
Confidence 34566677776666543 7789999999995
No 338
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=34.01 E-value=32 Score=27.13 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=14.3
Q ss_pred EEeecChhHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVA 102 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~ 102 (208)
.++|-|.||.+|+.++
T Consensus 43 li~GTStGgiia~~l~ 58 (329)
T cd07215 43 LVAGTSTGGILTCLYL 58 (329)
T ss_pred eeeccCHHHHHHHHHh
Confidence 6999999999998765
No 339
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=33.39 E-value=75 Score=24.31 Aligned_cols=41 Identities=5% Similarity=-0.102 Sum_probs=27.6
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++||+++-+.|+................+.+.|+.|+.+..
T Consensus 100 ~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~ 140 (261)
T PTZ00137 100 YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSV 140 (261)
T ss_pred eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 68899998888887765422223334455677888888863
No 340
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=33.37 E-value=68 Score=23.17 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 57 SWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
..++++|.... .....|+|+|||-=|.+...+.
T Consensus 73 ~~asleyav~~-------------l~v~~ivV~GH~~Cgav~Aa~~ 105 (190)
T cd00884 73 TSAAIEYAVAV-------------LKVEHIVVCGHSDCGGIRALLS 105 (190)
T ss_pred hhhhHHHHHHH-------------hCCCEEEEeCCCcchHHHHHhc
Confidence 56788888776 5568999999998887776543
No 341
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=33.04 E-value=71 Score=22.41 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=31.3
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhh
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASH 67 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~ 67 (208)
|.|+++.|.|-+.++ .-.+++.+.+.|+.|.++-+. +. +...++....++.+++.
T Consensus 26 ~~v~il~G~GnNGgD------gl~~AR~L~~~G~~V~v~~~~--~~---~~~~~~~~~~~~~~~~~ 80 (169)
T PF03853_consen 26 PRVLILCGPGNNGGD------GLVAARHLANRGYNVTVYLVG--PP---EKLSEDAKQQLEILKKM 80 (169)
T ss_dssp -EEEEEE-SSHHHHH------HHHHHHHHHHTTCEEEEEEEE--SS---SSTSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCChHH------HHHHHHHHHHCCCeEEEEEEe--cc---ccCCHHHHHHHHHHHhc
Confidence 578888887644332 455678888999998773222 11 13334555555555543
No 342
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=32.71 E-value=1.4e+02 Score=19.23 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHH
Q 042897 22 FKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYV 101 (208)
Q Consensus 22 ~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~ 101 (208)
+...+..++...|....+++....++. .+++.++..+.-. ....+|+|.|.+.||.--+..
T Consensus 26 ~c~~~k~ll~~~~v~~~vvELD~~~~g------~eiq~~l~~~tg~-------------~tvP~vFI~Gk~iGG~~dl~~ 86 (104)
T KOG1752|consen 26 YCHRAKELLSDLGVNPKVVELDEDEDG------SEIQKALKKLTGQ-------------RTVPNVFIGGKFIGGASDLMA 86 (104)
T ss_pred hHHHHHHHHHhCCCCCEEEEccCCCCc------HHHHHHHHHhcCC-------------CCCCEEEECCEEEcCHHHHHH
Confidence 345567788876654444433322221 2555555544322 234689999999999887665
Q ss_pred HHH
Q 042897 102 AVQ 104 (208)
Q Consensus 102 ~~~ 104 (208)
+..
T Consensus 87 lh~ 89 (104)
T KOG1752|consen 87 LHK 89 (104)
T ss_pred HHH
Confidence 543
No 343
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=32.67 E-value=93 Score=17.87 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCcceEEEE-----eCCCCccccccCCCCCch-HHHHHHHHHHHHh
Q 042897 155 GVYYYETLKKSEWHGKAEFYQ-----TLGEDHCFHMFNPKSKNV-GPFLQKLVNFIKS 206 (208)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~-----~~~~~H~~~~~~~~~~~~-~~~~~~i~~fl~~ 206 (208)
...+++.|++.|+ +++... ++..++.+....+...-. .+-++.+.+|+++
T Consensus 7 ~~a~~~~L~~~g~--~v~~~~~~~~~l~~~~~tll~i~~~~~~~~~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 7 TYALYQLLEEQGV--KVERWRKPYEALEADDGTLLVIGPDLRLSEPEEAEALLEWVEA 62 (70)
T ss_pred HHHHHHHHHHCCC--eeEEecccHHHhCCCCCEEEEEeCCCCCCchHHHHHHHHHHHc
Confidence 3556666666665 444221 122233333333332333 2667889999875
No 344
>PLN00416 carbonate dehydratase
Probab=31.90 E-value=71 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
.+.++++|.... .....|+|+|||.=|.+...+.
T Consensus 125 ~~~asLEyAv~~-------------L~V~~IVV~GHs~CGaV~Aa~~ 158 (258)
T PLN00416 125 GVGAAVEYAVVH-------------LKVENILVIGHSCCGGIKGLMS 158 (258)
T ss_pred cchhHHHHHHHH-------------hCCCEEEEecCCCchHHHHHHh
Confidence 356788888776 5568999999998887765543
No 345
>PRK10673 acyl-CoA esterase; Provisional
Probab=31.87 E-value=2e+02 Score=20.94 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=33.5
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|++++||-..... .-..+...+.+ + .+++.++--||+...... .-...+..+++.+++++
T Consensus 18 ~iv~lhG~~~~~~-~~~~~~~~l~~-~----~~vi~~D~~G~G~s~~~~-~~~~~~~~~d~~~~l~~ 77 (255)
T PRK10673 18 PIVLVHGLFGSLD-NLGVLARDLVN-D----HDIIQVDMRNHGLSPRDP-VMNYPAMAQDLLDTLDA 77 (255)
T ss_pred CEEEECCCCCchh-HHHHHHHHHhh-C----CeEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHH
Confidence 8999999866532 12334444533 2 355555555676443222 22345667777777764
No 346
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=31.63 E-value=81 Score=23.90 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=15.7
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID 41 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d 41 (208)
+|++||||. +....+.+.|...-..+
T Consensus 27 ~VlVHGgg~------------~i~~~~~~~gi~~~~~~ 52 (257)
T cd04251 27 LIVVHGGGN------------YVNEYLKRLGVEPKFVT 52 (257)
T ss_pred EEEECCCHH------------HHHHHHHHcCCCcEEEe
Confidence 678999773 22345566676554444
No 347
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=31.63 E-value=74 Score=26.11 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=16.5
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
+|.|-|+|+.+|..++...
T Consensus 98 iI~GtSAGAivaalla~~t 116 (407)
T cd07232 98 VISGTSGGSLVAALLCTRT 116 (407)
T ss_pred EEEEECHHHHHHHHHHcCC
Confidence 5999999999999888743
No 348
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=31.52 E-value=40 Score=25.83 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=16.3
Q ss_pred eEEeecChhHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~ 104 (208)
=.|.|-|+|+.++..++..
T Consensus 40 d~v~GtSaGAiiga~ya~g 58 (269)
T cd07227 40 DAIGGTSIGSFVGGLYARE 58 (269)
T ss_pred cEEEEECHHHHHHHHHHcC
Confidence 3689999999999888765
No 349
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.40 E-value=2.3e+02 Score=21.41 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=12.8
Q ss_pred CceEEeecChhHHHHH
Q 042897 84 GRVFLAGESAGANIAH 99 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~ 99 (208)
.+.+|...|.-.++|.
T Consensus 199 ~~l~I~~Dsg~~HlA~ 214 (279)
T cd03789 199 ADLVVTNDSGPMHLAA 214 (279)
T ss_pred CCEEEeeCCHHHHHHH
Confidence 6788888887777774
No 350
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=31.13 E-value=40 Score=25.71 Aligned_cols=20 Identities=35% Similarity=0.224 Sum_probs=16.0
Q ss_pred CceEEeecChhHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~ 103 (208)
..-.++|||+|=+.|+.++.
T Consensus 83 ~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 83 KPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred CCCEEeecCHHHHHHHHHhC
Confidence 34589999999988877664
No 351
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=30.64 E-value=2.3e+02 Score=21.11 Aligned_cols=65 Identities=6% Similarity=0.046 Sum_probs=37.7
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~ 205 (208)
-++++||-+=...+....+.+.....+.+..+-++.+|..+....+. ...+........+.+||+
T Consensus 20 vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~-~d~~~a~~s~~~l~~~L~ 84 (233)
T PF05990_consen 20 VLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYF-YDRESARFSGPALARFLR 84 (233)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhh-hhhhhHHHHHHHHHHHHH
Confidence 58899999877665555555555555443356677789877743332 222333344445555554
No 352
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=30.55 E-value=59 Score=27.52 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.9
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
.|+|-|.||.+|..+..+.
T Consensus 453 ~ICGvSTG~ilA~~Lg~k~ 471 (763)
T KOG4231|consen 453 LICGVSTGGILAIALGVKL 471 (763)
T ss_pred HHhccCchHHHHHHHHhcC
Confidence 5899999999999988766
No 353
>PRK13936 phosphoheptose isomerase; Provisional
Probab=30.55 E-value=1.3e+02 Score=21.63 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.1
Q ss_pred CCCCceEEeecChhHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
.+..+|+++|.+..+.+|..++.+
T Consensus 41 ~~a~~I~i~G~G~S~~~A~~~~~~ 64 (197)
T PRK13936 41 LNEGKILACGNGGSAADAQHFSAE 64 (197)
T ss_pred HCCCEEEEEeCcHhHHHHHHHHHH
Confidence 345899999999888888877754
No 354
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=30.55 E-value=1.1e+02 Score=23.32 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=30.4
Q ss_pred cEEEEeeCCCCChhh--HHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 140 RVLVCVAEKDGLRNR--GVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 140 p~li~~G~~D~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
++.+..|.+|.-++. .+++.++...... ++++.. ++..|.|.
T Consensus 223 kl~f~fg~~D~Wvp~~~~~~l~~~~~~~~~--~~~v~~-~~i~HaFc 266 (266)
T PF10230_consen 223 KLWFYFGQNDHWVPNETRDELIERYPGHEP--DVVVDE-EGIPHAFC 266 (266)
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHcCCCCC--eEEEec-CCCCCCCC
Confidence 799999999997753 3666666664432 667666 88889873
No 355
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=30.38 E-value=87 Score=24.82 Aligned_cols=17 Identities=35% Similarity=0.178 Sum_probs=14.6
Q ss_pred EEeecChhHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAV 103 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~ 103 (208)
+++|||+|=+.|+.++.
T Consensus 127 ~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 127 VCAGLSLGEYTALVFAG 143 (343)
T ss_pred eeeeccHHHHHHHHHhC
Confidence 68999999998887764
No 356
>PLN02154 carbonic anhydrase
Probab=30.33 E-value=81 Score=24.51 Aligned_cols=34 Identities=18% Similarity=0.349 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
.+.++++|.... .....|+|+|||-=|.+...+.
T Consensus 151 ~~~aslEyAv~~-------------L~v~~IvV~GHs~CGAV~Aal~ 184 (290)
T PLN02154 151 ETNSALEFAVTT-------------LQVENIIVMGHSNCGGIAALMS 184 (290)
T ss_pred chhhHHHHHHHH-------------hCCCEEEEecCCCchHHHHHHh
Confidence 356778888775 5568999999998777776543
No 357
>PTZ00062 glutaredoxin; Provisional
Probab=29.70 E-value=2.3e+02 Score=20.79 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=47.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
|++||+-|-...... .+...+..++.+.|.....+|.... .++++.+..+... .
T Consensus 114 ~Vvvf~Kg~~~~p~C----~~C~~~k~~L~~~~i~y~~~DI~~d---------~~~~~~l~~~sg~-------------~ 167 (204)
T PTZ00062 114 KILLFMKGSKTFPFC----RFSNAVVNMLNSSGVKYETYNIFED---------PDLREELKVYSNW-------------P 167 (204)
T ss_pred CEEEEEccCCCCCCC----hhHHHHHHHHHHcCCCEEEEEcCCC---------HHHHHHHHHHhCC-------------C
Confidence 899999984322222 2456678888998877666664411 2333444333221 1
Q ss_pred CCCceEEeecChhHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
....|+|-|.-.||+--+.-+.+
T Consensus 168 TvPqVfI~G~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 168 TYPQLYVNGELIGGHDIIKELYE 190 (204)
T ss_pred CCCeEEECCEEEcChHHHHHHHH
Confidence 23579999999999987765543
No 358
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=29.63 E-value=83 Score=25.66 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=16.9
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
+|.|.|+|+.+|..++...
T Consensus 114 ~i~GtS~Gaivaa~~a~~~ 132 (391)
T cd07229 114 IITGTATGALIAALVGVHT 132 (391)
T ss_pred eEEEecHHHHHHHHHHcCC
Confidence 5999999999999988854
No 359
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=29.27 E-value=93 Score=23.50 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=23.7
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 43 (208)
=|++-|+|.. ...+.+++...||.|.++|-|
T Consensus 102 ~L~IfGaG~v---------a~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 102 HVVLFGAGHV---------GRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred EEEEECCcHH---------HHHHHHHHhcCCCEEEEEeCC
Confidence 3556665532 466789999999999999987
No 360
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=29.25 E-value=3.3e+02 Score=22.59 Aligned_cols=109 Identities=15% Similarity=0.063 Sum_probs=55.8
Q ss_pred CCCCceEEeecChhHHHHHHHHHHHHHHHhhhccCCCCCCCCCccCC-CCC-cccccCCCCcEEEEeeCC-CC--C-hhh
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQLDEMYAYMCPTSAGFEEDPILNP-ALD-PNLKMMRSDRVLVCVAEK-DG--L-RNR 154 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~p~li~~G~~-D~--~-~~~ 154 (208)
.|++|+++.+.+.+++-++......+ =-...+| .|+..- ... ...... .+.=+|... |. + ++.
T Consensus 144 fdP~~~Vv~~G~T~ane~l~fcLadp-gdafLvP-------tPyY~gfdrdl~~rTgv---eivpv~c~Ss~~f~itv~a 212 (471)
T KOG0256|consen 144 FDPERVVVTNGATSANETLMFCLADP-GDAFLVP-------TPYYPGFDRDLRWRTGV---EIVPVHCSSSNGFQITVEA 212 (471)
T ss_pred cCccceEEecccchhhHHHHHHhcCC-Cceeeec-------CCCCCcccccceeccCc---eEEEEEeecCCCccccHHH
Confidence 88999999999999998877654320 0000111 111111 001 111222 233333332 32 2 245
Q ss_pred HHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 155 GVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 155 ~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+..+++.++.|. +|+=+++-+ -| .+.. ..-.++.+..+.+|..++
T Consensus 213 lE~A~~~A~~~~~--kVkGvlitN-Ps-NPLG---~~~~~e~L~~ll~Fa~~k 258 (471)
T KOG0256|consen 213 LEAALNQARKLGL--KVKGVLITN-PS-NPLG---TTLSPEELISLLNFASRK 258 (471)
T ss_pred HHHHHHHHHHhCC--ceeEEEEeC-CC-CCCC---CccCHHHHHHHHHHHhhc
Confidence 5666666777776 666555543 22 1111 122367788899998765
No 361
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=29.10 E-value=1.5e+02 Score=20.18 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
-.+..+.++|.... .....|+|+|||-=|.+...+.
T Consensus 38 ~~~~~~sle~av~~-------------l~v~~IiV~gHt~CGa~~~~~~ 73 (153)
T PF00484_consen 38 DDSALASLEYAVYH-------------LGVKEIIVCGHTDCGAIKAALD 73 (153)
T ss_dssp -HHHHHHHHHHHHT-------------ST-SEEEEEEETT-HHHHHHHH
T ss_pred ccchhhheeeeeec-------------CCCCEEEEEcCCCchHHHHHHh
Confidence 46777888887775 5678999999999888875443
No 362
>PRK13189 peroxiredoxin; Provisional
Probab=29.03 E-value=92 Score=23.04 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=26.6
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++|||+|-+.|+................+.++|..|+.+..
T Consensus 37 ~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~ 77 (222)
T PRK13189 37 WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSI 77 (222)
T ss_pred eEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 57888888888877764322223334455667888887753
No 363
>PLN03014 carbonic anhydrase
Probab=28.89 E-value=73 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 57 SWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
+.++++|.... .+...|+|+|||-=|.+...+.
T Consensus 206 v~asLEYAV~~-------------L~V~~IVV~GHs~CGaV~Aa~~ 238 (347)
T PLN03014 206 VGAAIEYAVLH-------------LKVENIVVIGHSACGGIKGLMS 238 (347)
T ss_pred chhHHHHHHHH-------------hCCCEEEEeCCCCchHHHHHHh
Confidence 66788888776 5568999999998777765443
No 364
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=28.80 E-value=60 Score=25.99 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.5
Q ss_pred CCCCceEEeecChhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
....+++++|-|.||--|+......
T Consensus 154 ~~~~~iV~IGaStGGp~AL~~il~~ 178 (350)
T COG2201 154 PAARKIVAIGASTGGPAALRAVLPA 178 (350)
T ss_pred CCCccEEEEEeCCCCHHHHHHHHHh
Confidence 4567899999999999999877765
No 365
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=28.79 E-value=2.4e+02 Score=20.75 Aligned_cols=20 Identities=5% Similarity=0.233 Sum_probs=16.0
Q ss_pred CceEEeecChhHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~ 103 (208)
.+++|...|.-.|+|..+-.
T Consensus 184 a~~~I~~Dtg~~HlA~a~~~ 203 (247)
T PF01075_consen 184 ADLVIGNDTGPMHLAAALGT 203 (247)
T ss_dssp SSEEEEESSHHHHHHHHTT-
T ss_pred CCEEEecCChHHHHHHHHhC
Confidence 68999999999999876553
No 366
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=28.70 E-value=2.5e+02 Score=22.71 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=39.9
Q ss_pred HHHHHHhCCcEEEEecCCCCC--------C----CCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecCh
Q 042897 26 LTSLVVKANIVAITIDYRLAP--------E----HHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESA 93 (208)
Q Consensus 26 ~~~~~~~~g~~v~~~d~~~~~--------~----~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~ 93 (208)
..+.+.++|+.|.++.|.... + .+.|..-+.+..+++.+++... .++=++|-|+
T Consensus 193 Ilr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~--------------~~iPifGICL 258 (368)
T COG0505 193 ILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLG--------------TKIPIFGICL 258 (368)
T ss_pred HHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhc--------------cCCCeEEEcH
Confidence 345567779999998887542 2 1344455667777777766542 3446899999
Q ss_pred hHHHHHH
Q 042897 94 GANIAHY 100 (208)
Q Consensus 94 GG~~a~~ 100 (208)
|=.+...
T Consensus 259 GHQllal 265 (368)
T COG0505 259 GHQLLAL 265 (368)
T ss_pred HHHHHHH
Confidence 9877543
No 367
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=28.34 E-value=1.2e+02 Score=25.14 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=47.6
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCC-----C-----CCchhhHHHHHHHHHHhhccC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEH-----H-----LPIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~-----~-----~~~~~~d~~~~~~~l~~~~~~ 70 (208)
+|+|++--|.+-.. ++. . .+...-.+-+-+.+.||...+. . ..+...|.-+.++-++..
T Consensus 63 rPtV~~T~GY~~~~-~p~----r---~Ept~Lld~NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~i--- 131 (448)
T PF05576_consen 63 RPTVLYTEGYNVST-SPR----R---SEPTQLLDGNQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPI--- 131 (448)
T ss_pred CCeEEEecCccccc-Ccc----c---cchhHhhccceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhh---
Confidence 48888887755321 111 1 1222223567788888864322 1 224556777777777663
Q ss_pred CCCCCcccCCCCCCceEEeecChhHHHHHH
Q 042897 71 QGPEPLLNRHADFGRVFLAGESAGANIAHY 100 (208)
Q Consensus 71 ~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~ 100 (208)
=+.+.+=.|-|-||..++.
T Consensus 132 -----------Y~~kWISTG~SKGGmTa~y 150 (448)
T PF05576_consen 132 -----------YPGKWISTGGSKGGMTAVY 150 (448)
T ss_pred -----------ccCCceecCcCCCceeEEE
Confidence 2478999999999987753
No 368
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=28.01 E-value=1.5e+02 Score=18.23 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=8.4
Q ss_pred HHHHHHhCCcEEE
Q 042897 26 LTSLVVKANIVAI 38 (208)
Q Consensus 26 ~~~~~~~~g~~v~ 38 (208)
....+.+.||.+.
T Consensus 77 aa~~L~~~G~~~~ 89 (100)
T cd01523 77 VAELLAERGYDVD 89 (100)
T ss_pred HHHHHHHcCceeE
Confidence 4556677788743
No 369
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=28.00 E-value=78 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=12.9
Q ss_pred HHHHHHHHHhCCcEEE
Q 042897 23 KRFLTSLVVKANIVAI 38 (208)
Q Consensus 23 ~~~~~~~~~~~g~~v~ 38 (208)
...++.+|.+.|+.|-
T Consensus 48 NeVLkALc~eAGw~Ve 63 (150)
T PF05687_consen 48 NEVLKALCREAGWTVE 63 (150)
T ss_pred HHHHHHHHHhCCEEEc
Confidence 5677899999998764
No 370
>PRK15219 carbonic anhydrase; Provisional
Probab=27.93 E-value=94 Score=23.52 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHH
Q 042897 55 EDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYV 101 (208)
Q Consensus 55 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~ 101 (208)
.|+..+++|-... .+...|+|+|||.=|.+...+
T Consensus 127 ~~~~~slEyAv~~-------------L~v~~IvVlGHt~CGav~Aa~ 160 (245)
T PRK15219 127 DDLLGSMEFACAV-------------AGAKVVLVMGHTACGAVKGAI 160 (245)
T ss_pred cchhhHHHHHHHH-------------cCCCEEEEecCCcchHHHHHH
Confidence 4677888888776 566899999999888776544
No 371
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=27.87 E-value=1e+02 Score=22.16 Aligned_cols=41 Identities=5% Similarity=-0.064 Sum_probs=25.4
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++||+++.+.|+...+........+...+.++|+.|+.+..
T Consensus 38 ~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~ 78 (199)
T PTZ00253 38 WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSM 78 (199)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 57888887776666554322223334455667888888863
No 372
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=27.85 E-value=74 Score=23.37 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHH
Q 042897 55 EDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 55 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~ 103 (208)
.++...++|.... .+...|+|+||+-=|.+.+.+..
T Consensus 76 ~~~l~sleyAv~~-------------L~v~~IiV~GH~~CGav~aa~~~ 111 (207)
T COG0288 76 GSVLRSLEYAVYV-------------LGVKEIIVCGHTDCGAVKAALDD 111 (207)
T ss_pred cchhHHHHHHHHH-------------cCCCEEEEecCCCcHHHHhcccc
Confidence 5778888888776 56789999999998888766553
No 373
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=27.80 E-value=1.6e+02 Score=18.40 Aligned_cols=76 Identities=9% Similarity=0.103 Sum_probs=44.5
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
|+|||..|- ...... .|...+.+++.+.|+....+|..-. .+....+..+... .
T Consensus 13 ~Vvvf~kg~---~~~~~C-p~C~~ak~lL~~~~i~~~~~di~~~---------~~~~~~l~~~tg~-------------~ 66 (97)
T TIGR00365 13 PVVLYMKGT---PQFPQC-GFSARAVQILKACGVPFAYVNVLED---------PEIRQGIKEYSNW-------------P 66 (97)
T ss_pred CEEEEEccC---CCCCCC-chHHHHHHHHHHcCCCEEEEECCCC---------HHHHHHHHHHhCC-------------C
Confidence 788998773 111111 2467778999999987666664311 1222333322211 2
Q ss_pred CCCceEEeecChhHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~ 103 (208)
....|++-|...||+-.+..+.
T Consensus 67 tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 67 TIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCCEEEECCEEEeChHHHHHHH
Confidence 2357889999999998776553
No 374
>PLN03019 carbonic anhydrase
Probab=27.80 E-value=74 Score=25.23 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 57 SWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 57 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
+.++++|.... .....|+|+|||-=|.+...+.
T Consensus 201 v~aSIEYAV~~-------------L~V~~IVV~GHs~CGaVkAal~ 233 (330)
T PLN03019 201 VGAAIEYAVLH-------------LKVENIVVIGHSACGGIKGLMS 233 (330)
T ss_pred cchhHHHHHHH-------------hCCCEEEEecCCCchHHHHHHh
Confidence 56788888776 5568999999999887776543
No 375
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=27.65 E-value=2.3e+02 Score=20.19 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCcEEEEecCCCC
Q 042897 24 RFLTSLVVKANIVAITIDYRLA 45 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~~ 45 (208)
....+.+..+||.|..+|..-.
T Consensus 17 Sacv~~FkannywV~siDl~eN 38 (236)
T KOG4022|consen 17 SACVEFFKANNYWVLSIDLSEN 38 (236)
T ss_pred HHHHHHHHhcCeEEEEEeeccc
Confidence 3346677888999999997543
No 376
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=27.57 E-value=1e+02 Score=24.38 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.6
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
++.|-|+|+.+|..++...
T Consensus 99 ~i~GsSaGAivaa~~~~~t 117 (323)
T cd07231 99 VIAGSSVGSIVCAIIATRT 117 (323)
T ss_pred EEEEECHHHHHHHHHHcCC
Confidence 5999999999999888754
No 377
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=27.46 E-value=98 Score=23.43 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=16.4
Q ss_pred eEEeecChhHHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~~ 105 (208)
-.+.|-|+|+.++..+++..
T Consensus 38 ~~i~G~SAGAl~aa~~a~g~ 57 (249)
T cd07220 38 RKIYGASAGALTATALVTGV 57 (249)
T ss_pred CeEEEEcHHHHHHHHHHcCC
Confidence 45889999999999877644
No 378
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=27.44 E-value=1.5e+02 Score=18.06 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=43.4
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHA 81 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (208)
|+|||..|..-.... .+...+.+++.+.|...-.+|.... .++.+.+..+... .
T Consensus 9 ~vvvf~k~~~~~~~C----p~C~~ak~~L~~~~i~y~~idv~~~---------~~~~~~l~~~~g~-------------~ 62 (90)
T cd03028 9 PVVLFMKGTPEEPRC----GFSRKVVQILNQLGVDFGTFDILED---------EEVRQGLKEYSNW-------------P 62 (90)
T ss_pred CEEEEEcCCCCCCCC----cHHHHHHHHHHHcCCCeEEEEcCCC---------HHHHHHHHHHhCC-------------C
Confidence 789998873212222 2456678899999977666664311 2223333222211 1
Q ss_pred CCCceEEeecChhHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~ 102 (208)
....|++-|.-.||.--+..+
T Consensus 63 tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 63 TFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred CCCEEEECCEEEeCHHHHHHH
Confidence 234688888888888766554
No 379
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=27.43 E-value=2.9e+02 Score=21.29 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=46.2
Q ss_pred ceEEeecChhHHHHHHHHHHH----------HHHHhhhccCCCCCCCCCccCC------CCCcccccCCCCcEEEEeeCC
Q 042897 85 RVFLAGESAGANIAHYVAVQL----------DEMYAYMCPTSAGFEEDPILNP------ALDPNLKMMRSDRVLVCVAEK 148 (208)
Q Consensus 85 ~i~l~G~S~GG~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~li~~G~~ 148 (208)
+-.|+|-++|..++...+.+. -.+...-.+-..+ .-|+-+. ...+-+...+..|++.-.+..
T Consensus 14 ~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrfR~~G~~Slag--llpygnaN~iv~em~~eiLp~v~~tPViaGv~at 91 (268)
T PF09370_consen 14 GKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRFRMAGRGSLAG--LLPYGNANEIVMEMAREILPVVKDTPVIAGVCAT 91 (268)
T ss_dssp T--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGG--GBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT
T ss_pred CCceEEEeeccchhhHHHHhcCCCEEEEecchhHhhCCCcchhh--hhcccCHhHHHHHHHHhhhhhccCCCEEEEecCc
Confidence 456888999999999988766 1111100000000 1111111 011222333334899999999
Q ss_pred CCChhhHHHHHHHHHhcCCCcceEEEEeCCCCc
Q 042897 149 DGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDH 181 (208)
Q Consensus 149 D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H 181 (208)
|+.++ ...+.+.+++.|+ .-+..||..+.
T Consensus 92 DP~~~-~~~fl~~lk~~Gf---~GV~NfPTvgl 120 (268)
T PF09370_consen 92 DPFRD-MDRFLDELKELGF---SGVQNFPTVGL 120 (268)
T ss_dssp -TT---HHHHHHHHHHHT----SEEEE-S-GGG
T ss_pred CCCCc-HHHHHHHHHHhCC---ceEEECCccee
Confidence 99874 5667888999985 56777887776
No 380
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=27.27 E-value=1.2e+02 Score=22.78 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=7.3
Q ss_pred HHHHHHhCCcEEEEec
Q 042897 26 LTSLVVKANIVAITID 41 (208)
Q Consensus 26 ~~~~~~~~g~~v~~~d 41 (208)
+.+.+.+.|..++.=-
T Consensus 208 ~a~~lidaGaDiIiG~ 223 (250)
T PF09587_consen 208 LARALIDAGADIIIGH 223 (250)
T ss_pred HHHHHHHcCCCEEEeC
Confidence 3444444455544443
No 381
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=26.80 E-value=1.1e+02 Score=23.95 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.7
Q ss_pred EEeecChhHHHHHHHHHHH
Q 042897 87 FLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 87 ~l~G~S~GG~~a~~~~~~~ 105 (208)
++.|-|+|+.+|..++...
T Consensus 100 ~i~GtSaGAi~aa~~~~~~ 118 (298)
T cd07206 100 VISGSSAGAIVAALLGTHT 118 (298)
T ss_pred EEEEEcHHHHHHHHHHcCC
Confidence 5999999999999888754
No 382
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=26.80 E-value=49 Score=29.43 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=15.9
Q ss_pred eEEeecChhHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAV 103 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~ 103 (208)
=+|+|.|+||.++..+|+
T Consensus 68 d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 68 DVISGTSAGGINGVLLAY 85 (739)
T ss_pred ceEEeeCHHHHHHHHHHc
Confidence 369999999999988886
No 383
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=26.76 E-value=3.5e+02 Score=22.04 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=35.0
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCC-CCCchHHHHHHHHHHHH
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNP-KSKNVGPFLQKLVNFIK 205 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~-~~~~~~~~~~~i~~fl~ 205 (208)
+++++||-.+... .-..+.+.+.+.|. .++.++-.||+...... .....+...+++.++++
T Consensus 138 ~Vl~lHG~~~~~~-~~~~~a~~L~~~Gy----~V~~~D~rGhG~S~~~~~~~~~~~~~~~Dl~~~l~ 199 (395)
T PLN02652 138 ILIIIHGLNEHSG-RYLHFAKQLTSCGF----GVYAMDWIGHGGSDGLHGYVPSLDYVVEDTEAFLE 199 (395)
T ss_pred EEEEECCchHHHH-HHHHHHHHHHHCCC----EEEEeCCCCCCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 7999999876432 23456777877765 66666666776432111 11223444555555554
No 384
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.67 E-value=85 Score=21.13 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 154 RGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 154 ~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.-+.+.+.+++.|+ ++-+++.|--|--+....-..+...++.++|.+-++++
T Consensus 37 Dl~l~L~~~k~~g~--~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~ 88 (130)
T PF04914_consen 37 DLQLLLDVCKELGI--DVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQ 88 (130)
T ss_dssp HHHHHHHHHHHTT---EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC--ceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHC
Confidence 45778889999988 99999998655433332223345566777777766654
No 385
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=26.61 E-value=97 Score=20.69 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=22.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++||++..+.|+............+.+.+.+.|+.++.+..
T Consensus 30 ~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 70 (149)
T cd03018 30 PVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISV 70 (149)
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 56777776666665543211112223334456888888863
No 386
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.36 E-value=1.8e+02 Score=20.86 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHH
Q 042897 54 HEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 54 ~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~ 104 (208)
.+.+.++++.+.+.. ....+|+++|....+.+|..++..
T Consensus 27 ~~~i~~a~~~i~~al------------~~~~rI~i~G~G~S~~~A~~~a~~ 65 (192)
T PRK00414 27 IHAIQRAAVLIADSF------------KAGGKVLSCGNGGSHCDAMHFAEE 65 (192)
T ss_pred HHHHHHHHHHHHHHH------------HCCCEEEEEeCcHHHHHHHHHHHH
Confidence 355667777777654 234799999999999988888754
No 387
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=26.31 E-value=3.2e+02 Score=21.46 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCcceEEEEeCCCCccccccC----CCCCchHHHHHHHHHHHHh
Q 042897 156 VYYYETLKKSEWHGKAEFYQTLGEDHCFHMFN----PKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 156 ~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~----~~~~~~~~~~~~i~~fl~~ 206 (208)
..+.+.+.+.|. .++.++-.||+-.... ......+.+.+++.++++.
T Consensus 64 ~~~~~~l~~~G~----~V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~ 114 (332)
T TIGR01607 64 DSWIENFNKNGY----SVYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNR 114 (332)
T ss_pred HHHHHHHHHCCC----cEEEecccccCCCccccccccchhhHHHHHHHHHHHHHH
Confidence 356888888876 6666666778743211 1112345666777777654
No 388
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=26.28 E-value=1.8e+02 Score=20.62 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=28.2
Q ss_pred cEEEEeeCCCCCh-hhHHHHHHHHHhcCCCcceEEEEe
Q 042897 140 RVLVCVAEKDGLR-NRGVYYYETLKKSEWHGKAEFYQT 176 (208)
Q Consensus 140 p~li~~G~~D~~~-~~~~~~~~~l~~~g~~~~~~~~~~ 176 (208)
.+||+.+++|-.+ .-++.++..|++.|. +|++.-.
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~--qvdi~dl 37 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGI--QVDIQDL 37 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCC--eeeeeeh
Confidence 5899999999876 466778888999987 7877654
No 389
>PRK13190 putative peroxiredoxin; Provisional
Probab=26.12 E-value=1.1e+02 Score=22.09 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=25.0
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++||+.|-+.|+................+.++|+.|+.+..
T Consensus 29 ~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~ 69 (202)
T PRK13190 29 WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSV 69 (202)
T ss_pred EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46777788888877654321122223344567898888864
No 390
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=25.98 E-value=1.9e+02 Score=20.26 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=16.2
Q ss_pred CceEEeecChhHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~ 104 (208)
++|+++|...-+.+|..+..+
T Consensus 31 ~~I~i~G~G~S~~~A~~~~~~ 51 (179)
T TIGR03127 31 KRIFVAGAGRSGLVGKAFAMR 51 (179)
T ss_pred CEEEEEecCHHHHHHHHHHHH
Confidence 699999998777777666644
No 391
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=25.96 E-value=1.5e+02 Score=22.78 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=35.4
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcE-EEEecCC------CCCCCCCCchhhHHHHHHHHHHhh
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIV-AITIDYR------LAPEHHLPIAHEDSWAGLEWVASH 67 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~-v~~~d~~------~~~~~~~~~~~~d~~~~~~~l~~~ 67 (208)
.|.||++-|-.+. |.. .....++.+.|+. |+.-|+- ..+..-.|+...-.-.|++.+...
T Consensus 88 ~p~IILIGGasGV-GkS------tIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~ 154 (299)
T COG2074 88 RPLIILIGGASGV-GKS------TIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDP 154 (299)
T ss_pred CCeEEEecCCCCC-Chh------HHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCC
Confidence 3778877663332 321 3346778888976 6677762 122234556666666777777664
No 392
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=25.96 E-value=1.8e+02 Score=18.37 Aligned_cols=32 Identities=9% Similarity=0.071 Sum_probs=17.7
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID 41 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d 41 (208)
|+|++..+|. .. ....+...+.+.|+.|..++
T Consensus 66 ~vvvyc~~g~-~~-------~s~~~a~~l~~~G~~v~~l~ 97 (110)
T cd01521 66 LFVVYCDGPG-CN-------GATKAALKLAELGFPVKEMI 97 (110)
T ss_pred eEEEEECCCC-Cc-------hHHHHHHHHHHcCCeEEEec
Confidence 5667766532 10 02334566678899865554
No 393
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=25.83 E-value=3e+02 Score=21.63 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=14.8
Q ss_pred CCceEEeecChhHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~ 102 (208)
..+++|.+.|.-.|+|..+-
T Consensus 260 ~a~l~Vs~DSGp~HlAaA~g 279 (344)
T TIGR02201 260 HARLFIGVDSVPMHMAAALG 279 (344)
T ss_pred hCCEEEecCCHHHHHHHHcC
Confidence 36788888888888876544
No 394
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=25.46 E-value=1.8e+02 Score=22.91 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 53 AHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 53 ~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
.-..+.+-++|.+.....- ..|.|+.|+|-|.|=.+|..++...
T Consensus 20 Ce~nV~~QI~y~k~~gp~~---------ngPKkVLviGaSsGyGLa~RIsaaF 63 (398)
T COG3007 20 CEANVLQQIDYVKAAGPIK---------NGPKKVLVIGASSGYGLAARISAAF 63 (398)
T ss_pred HHHHHHHHHHHHHhcCCcc---------CCCceEEEEecCCcccHHHHHHHHh
Confidence 4456677788887654321 3578999999999999999888766
No 395
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=25.46 E-value=90 Score=21.75 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=11.4
Q ss_pred CCCCceEEeecChhHH
Q 042897 81 ADFGRVFLAGESAGAN 96 (208)
Q Consensus 81 ~~~~~i~l~G~S~GG~ 96 (208)
..|++|.|+|+|++..
T Consensus 101 ~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 101 ISPKKISLVGCSLADN 116 (157)
T ss_dssp --ESEEEEESSS-S-T
T ss_pred CCCCEEEEEEecccCC
Confidence 5789999999999988
No 396
>PRK10437 carbonic anhydrase; Provisional
Probab=25.41 E-value=1.2e+02 Score=22.49 Aligned_cols=34 Identities=6% Similarity=0.220 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHHHH
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~~ 102 (208)
++..+++|.... .+...|+|+|||-=|.+...+.
T Consensus 76 ~~~~~leyAV~~-------------L~v~~IvV~GHt~CG~V~Aal~ 109 (220)
T PRK10437 76 NCLSVVQYAVDV-------------LEVEHIIICGHYGCGGVQAAVE 109 (220)
T ss_pred chHHHHHHHHHH-------------cCCCEEEEeCCCCchHHHHHHc
Confidence 467778887665 5567999999999888776543
No 397
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=25.30 E-value=3.1e+02 Score=20.96 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhCCcEEEEecCCC----------------------------CCCCCCCchhhHHHHHHHHHHhhccC
Q 042897 21 PFKRFLTSLVVKANIVAITIDYRL----------------------------APEHHLPIAHEDSWAGLEWVASHSYG 70 (208)
Q Consensus 21 ~~~~~~~~~~~~~g~~v~~~d~~~----------------------------~~~~~~~~~~~d~~~~~~~l~~~~~~ 70 (208)
+|+.-+..++.+.|-.|.+++..- +|+....-.++.+.+-++|+.++.++
T Consensus 17 TYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~~idwl~~~l~~ 94 (290)
T KOG1533|consen 17 TYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEANIDWLLEKLKP 94 (290)
T ss_pred chhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHhhhHHHHHHhhh
Confidence 467777888999998666655332 22222223456777888999888765
No 398
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=25.11 E-value=3.4e+02 Score=21.28 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=33.6
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 206 (208)
|++++||-..... .-..+...+.. ..+++.++..||+.............+.+.+.+++++
T Consensus 133 ~vl~~HG~~~~~~-~~~~~~~~l~~-----~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~ 193 (371)
T PRK14875 133 PVVLIHGFGGDLN-NWLFNHAALAA-----GRPVIALDLPGHGASSKAVGAGSLDELAAAVLAFLDA 193 (371)
T ss_pred eEEEECCCCCccc-hHHHHHHHHhc-----CCEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 8999998654322 22333444433 2366667666787553222233445666666666654
No 399
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=24.85 E-value=67 Score=24.14 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCCCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecCh
Q 042897 24 RFLTSLVVKANIVAITIDYRLAPEHHLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESA 93 (208)
Q Consensus 24 ~~~~~~~~~~g~~v~~~d~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~ 93 (208)
..+...+.+.|..+-.+ |.....-.+-.....=..|++||.+... ++.++++++|.|.
T Consensus 134 ~~i~~~l~~~~l~~~~i-~s~~~~ldilP~~a~K~~Al~~L~~~~~-----------~~~~~vl~aGDSg 191 (247)
T PF05116_consen 134 EEIRARLRQRGLRVNVI-YSNGRDLDILPKGASKGAALRYLMERWG-----------IPPEQVLVAGDSG 191 (247)
T ss_dssp HHHHHHHHCCTCEEEEE-ECTCCEEEEEETT-SHHHHHHHHHHHHT-------------GGGEEEEESSG
T ss_pred HHHHHHHHHcCCCeeEE-EccceeEEEccCCCCHHHHHHHHHHHhC-----------CCHHHEEEEeCCC
Confidence 44566777788876444 2211110110111223468889888753 7788999999994
No 400
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.71 E-value=1.6e+02 Score=23.09 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=20.7
Q ss_pred CCCCceEEeecC--hhHHHHHHHHHHH
Q 042897 81 ADFGRVFLAGES--AGANIAHYVAVQL 105 (208)
Q Consensus 81 ~~~~~i~l~G~S--~GG~~a~~~~~~~ 105 (208)
+...+|+++|.| +|-.+|..+..+.
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~g 183 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAH 183 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCC
Confidence 566899999997 9999998887543
No 401
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=24.68 E-value=3.4e+02 Score=21.11 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=19.8
Q ss_pred CEEEEEcCCccccCCCCCc-hhHHHHHHHHHhCCcEEEEe
Q 042897 2 PLLIHYHGGGFCLGSALDM-PFKRFLTSLVVKANIVAITI 40 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~-~~~~~~~~~~~~~g~~v~~~ 40 (208)
|.|+++||+++. .+..+ .....+.+.+.+.|+.++..
T Consensus 179 ~~i~~~~~~s~~--~k~Wp~e~~a~li~~l~~~~~~ivl~ 216 (322)
T PRK10964 179 PYLVFLHATTRD--DKHWPEAHWRELIGLLAPSGLRIKLP 216 (322)
T ss_pred CeEEEEeCCCcc--cccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 567788987642 23221 12233444446668877653
No 402
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.59 E-value=1.5e+02 Score=20.76 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=24.8
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID 41 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d 41 (208)
|+|||+....++.|....---.......+.+.|..|+.+.
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS 71 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGIS 71 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 6889998888887765421011222334566688888775
No 403
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.59 E-value=2.2e+02 Score=20.67 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+..||+++|.+..|.+|..++.+.
T Consensus 44 ~g~rI~i~G~G~S~~~A~~fa~~L 67 (196)
T PRK13938 44 AGARVFMCGNGGSAADAQHFAAEL 67 (196)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHc
Confidence 348999999999999999888653
No 404
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.36 E-value=1.9e+02 Score=21.77 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHhCCcEEEEecCCCCCCC-----CCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHH----H
Q 042897 28 SLVVKANIVAITIDYRLAPEH-----HLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANI----A 98 (208)
Q Consensus 28 ~~~~~~g~~v~~~d~~~~~~~-----~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~----a 98 (208)
+.+++.+..|++.|+-+-.+. ..+..++|....+++|++.. ++.-.-+++|-+.|+.- |
T Consensus 104 eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~------------irvvpHitiGL~~gki~~e~ka 171 (275)
T COG1856 104 EKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENG------------IRVVPHITIGLDFGKIHGEFKA 171 (275)
T ss_pred HHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcC------------ceeceeEEEEeccCcccchHHH
Confidence 445566788888887654321 34566889999999998864 44456678899988754 4
Q ss_pred HHHHH
Q 042897 99 HYVAV 103 (208)
Q Consensus 99 ~~~~~ 103 (208)
+.++.
T Consensus 172 IdiL~ 176 (275)
T COG1856 172 IDILV 176 (275)
T ss_pred HHHHh
Confidence 44444
No 405
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=23.83 E-value=3.2e+02 Score=20.61 Aligned_cols=61 Identities=10% Similarity=-0.045 Sum_probs=35.8
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCC-------CCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNP-------KSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~-------~~~~~~~~~~~i~~fl~~ 206 (208)
|++++||-..... .-+.+...+... .+++.++--||+...... ..-..++..+.+.+++++
T Consensus 31 ~vlllHG~~~~~~-~w~~~~~~L~~~-----~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~ 98 (294)
T PLN02824 31 ALVLVHGFGGNAD-HWRKNTPVLAKS-----HRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSD 98 (294)
T ss_pred eEEEECCCCCChh-HHHHHHHHHHhC-----CeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHH
Confidence 8999999876432 223344555543 266666666776543211 012346778888888875
No 406
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=23.62 E-value=1.7e+02 Score=19.77 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=22.6
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
++||++-+..|+............+...+...|+.++.+..
T Consensus 32 ~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~ 72 (154)
T PRK09437 32 RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIST 72 (154)
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 67788766544544432111122233445567899998864
No 407
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=23.61 E-value=1.2e+02 Score=18.74 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=19.0
Q ss_pred EEEEeeCCCCChhhHHHHHHHHHhcCC
Q 042897 141 VLVCVAEKDGLRNRGVYYYETLKKSEW 167 (208)
Q Consensus 141 ~li~~G~~D~~~~~~~~~~~~l~~~g~ 167 (208)
++|.|...| .+..+.+.+.|++.|.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~ 25 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGI 25 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCC
Confidence 578899988 3456778888988875
No 408
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=23.55 E-value=3.3e+02 Score=20.60 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=34.9
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCC-CCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPK-SKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~-~~~~~~~~~~i~~fl~~ 206 (208)
+++++||--.... .-..+...|.+.|. ++-...++ ||+.....+. ....+...+.+.+++++
T Consensus 20 ~vvliHG~~~~~~-~w~~~~~~L~~~g~--~vi~~dl~--g~G~s~~~~~~~~~~~~~~~~l~~~i~~ 82 (273)
T PLN02211 20 HFVLIHGISGGSW-CWYKIRCLMENSGY--KVTCIDLK--SAGIDQSDADSVTTFDEYNKPLIDFLSS 82 (273)
T ss_pred eEEEECCCCCCcC-cHHHHHHHHHhCCC--EEEEeccc--CCCCCCCCcccCCCHHHHHHHHHHHHHh
Confidence 7999999765432 22445666776665 55444454 6663321111 12335566777777764
No 409
>PHA01735 hypothetical protein
Probab=23.54 E-value=93 Score=18.30 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=14.8
Q ss_pred CCchhhHHHHHHHHHHhh
Q 042897 50 LPIAHEDSWAGLEWVASH 67 (208)
Q Consensus 50 ~~~~~~d~~~~~~~l~~~ 67 (208)
......|+.++++||+++
T Consensus 28 geATtaDL~AA~d~Lk~N 45 (76)
T PHA01735 28 GEATTADLRAACDWLKSN 45 (76)
T ss_pred CcccHHHHHHHHHHHHHC
Confidence 345678999999999985
No 410
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=23.42 E-value=3.4e+02 Score=20.74 Aligned_cols=41 Identities=5% Similarity=-0.159 Sum_probs=24.6
Q ss_pred cEEEEeeCCCCCh---hhHHHHHHHHHhcCCCcceEEEEeCCCCcccc
Q 042897 140 RVLVCVAEKDGLR---NRGVYYYETLKKSEWHGKAEFYQTLGEDHCFH 184 (208)
Q Consensus 140 p~li~~G~~D~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~ 184 (208)
+++++||--.... .....+.+.+.+.|. .++.++=-||+..
T Consensus 27 ~VlllHG~g~~~~~~~~~~~~la~~La~~Gy----~Vl~~Dl~G~G~S 70 (266)
T TIGR03101 27 VVIYLPPFAEEMNKSRRMVALQARAFAAGGF----GVLQIDLYGCGDS 70 (266)
T ss_pred EEEEECCCcccccchhHHHHHHHHHHHHCCC----EEEEECCCCCCCC
Confidence 6889999654322 223456677777765 5555555567643
No 411
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=23.28 E-value=2.4e+02 Score=20.45 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.7
Q ss_pred CCCceEEeecChhHHHHHHHHHHH
Q 042897 82 DFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 82 ~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
+..||+++|-..-|.+|..++.+.
T Consensus 40 ~~~rI~~~G~GgSa~~A~~~a~~l 63 (196)
T PRK10886 40 NGNKILCCGNGTSAANAQHFAASM 63 (196)
T ss_pred cCCEEEEEECcHHHHHHHHHHHHH
Confidence 348999999998888888888653
No 412
>PRK09330 cell division protein FtsZ; Validated
Probab=23.20 E-value=4.2e+02 Score=21.69 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=35.5
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCCCCCC-CCCCchhhHHHHHHHHHHhhc
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYRLAPE-HHLPIAHEDSWAGLEWVASHS 68 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~~-~~~~~~~~d~~~~~~~l~~~~ 68 (208)
.|+++||=|+..|+- ..+.+++++.+.|..++++=- .|. .-.......+...++.|++..
T Consensus 100 ~vfI~AGmGGGTGTG----aapvIA~iake~g~ltvaVvt--~PF~fEG~~r~~nA~~gL~~L~~~~ 160 (384)
T PRK09330 100 MVFITAGMGGGTGTG----AAPVVAEIAKELGILTVAVVT--KPFSFEGKKRMKQAEEGIEELRKHV 160 (384)
T ss_pred EEEEEecCCCcccHH----HHHHHHHHHHHcCCcEEEEEe--cCccccchhHHHHHHHHHHHHHHHC
Confidence 478889933334442 356778999998977655531 121 112234556777777777764
No 413
>PRK10749 lysophospholipase L2; Provisional
Probab=23.19 E-value=3.7e+02 Score=20.99 Aligned_cols=62 Identities=8% Similarity=0.048 Sum_probs=35.3
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCC------CCCchHHHHHHHHHHHHh
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNP------KSKNVGPFLQKLVNFIKS 206 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~------~~~~~~~~~~~i~~fl~~ 206 (208)
+++++||-.+.. ..-..+...+.+.|. +++.++-.||+...... .....+.+.+++.++++.
T Consensus 56 ~vll~HG~~~~~-~~y~~~~~~l~~~g~----~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 123 (330)
T PRK10749 56 VVVICPGRIESY-VKYAELAYDLFHLGY----DVLIIDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQ 123 (330)
T ss_pred EEEEECCccchH-HHHHHHHHHHHHCCC----eEEEEcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHH
Confidence 799999975432 233445556666765 55666656776442110 112345667777777653
No 414
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.14 E-value=2.8e+02 Score=19.63 Aligned_cols=52 Identities=19% Similarity=0.088 Sum_probs=36.3
Q ss_pred HHhCCcEEEEecCCCCCCC-CCCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChh
Q 042897 30 VVKANIVAITIDYRLAPEH-HLPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAG 94 (208)
Q Consensus 30 ~~~~g~~v~~~d~~~~~~~-~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~G 94 (208)
+.+.|+..+++|....-.. .-.....++.+.++.+++. ...++|.|+.-|+|
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~-------------~~~~~v~IvSNsaG 88 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQ-------------FGKDRVLIVSNSAG 88 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHH-------------CCCCeEEEEECCCC
Confidence 6788999999997644222 2234456677777777765 23358999999986
No 415
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.73 E-value=1.3e+02 Score=23.80 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=20.5
Q ss_pred EEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 5 IHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 5 i~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
|++-||.+..|| .....+.+.|+.|+++|-
T Consensus 3 iLVtGGAGYIGS--------Htv~~Ll~~G~~vvV~DN 32 (329)
T COG1087 3 VLVTGGAGYIGS--------HTVRQLLKTGHEVVVLDN 32 (329)
T ss_pred EEEecCcchhHH--------HHHHHHHHCCCeEEEEec
Confidence 456676655543 345556678999999994
No 416
>COG4425 Predicted membrane protein [Function unknown]
Probab=22.71 E-value=4.2e+02 Score=22.42 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHhCCcEEEEecCCCCC-------CCCCCchhh--HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHHH
Q 042897 30 VVKANIVAITIDYRLAP-------EHHLPIAHE--DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAHY 100 (208)
Q Consensus 30 ~~~~g~~v~~~d~~~~~-------~~~~~~~~~--d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~ 100 (208)
+-.-.+..++..|...+ +..+..... =.++++.++...++ -...|.+|-|.|.|+.-...
T Consensus 345 L~~Gd~asVsmQYSyL~SwLSllvdpdyg~~aa~aLf~aVy~yw~qLP~-----------~sRPKLylhG~SLGa~~s~~ 413 (588)
T COG4425 345 LYNGDVASVSMQYSYLPSWLSLLVDPDYGADAARALFEAVYGYWTQLPK-----------SSRPKLYLHGESLGAMGSEA 413 (588)
T ss_pred HhCCceEEEEEehhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHhCCc-----------CCCCceEEeccccccccCcc
Confidence 33435667777776432 222222222 23445666666554 34578999999999987654
No 417
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=22.68 E-value=1.8e+02 Score=22.56 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=31.8
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCcc
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDHC 182 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~ 182 (208)
|+.+...+.|...+.++.+.+.+++.+ +.-++.--+..|-
T Consensus 156 Pi~m~~q~~~~a~~ig~~i~k~i~e~~---~~liIaSSDf~HY 195 (279)
T COG1355 156 PICMGMQDKEVARDIGRAIAKVIKELG---DALIIASSDFTHY 195 (279)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhcC---CeEEEEecCcccc
Confidence 899998888888888899999998885 4556666677883
No 418
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=22.53 E-value=58 Score=20.86 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=24.5
Q ss_pred CCEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecCC
Q 042897 1 LPLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDYR 43 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~~ 43 (208)
.|+||++-...|+............+...+.+.|+.++.+...
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc
Confidence 3678888776666554432111222233445668998888753
No 419
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=22.49 E-value=95 Score=19.81 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=20.0
Q ss_pred cEEEEee---CCCCChhhHHHHHHHHHhcCCCcceEEE
Q 042897 140 RVLVCVA---EKDGLRNRGVYYYETLKKSEWHGKAEFY 174 (208)
Q Consensus 140 p~li~~G---~~D~~~~~~~~~~~~l~~~g~~~~~~~~ 174 (208)
|+|++.| .+|-.-+....+...+++.|. +|+.+
T Consensus 63 Pl~L~~G~H~~~Dipge~~~SW~~~l~~~g~--~v~~~ 98 (103)
T cd03413 63 PLMLVAGDHAHNDMAGDEPDSWKSILEAAGI--KVETV 98 (103)
T ss_pred ehhheecccchhcCCCCCchhHHHHHHHCCC--eeEEE
Confidence 5566533 345433445678888888887 66544
No 420
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=22.38 E-value=1.3e+02 Score=22.52 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=13.0
Q ss_pred HHHHHhCCcEEEEecCC
Q 042897 27 TSLVVKANIVAITIDYR 43 (208)
Q Consensus 27 ~~~~~~~g~~v~~~d~~ 43 (208)
...++++|+.|+.+|+-
T Consensus 58 ~~~LA~~G~~V~GvDlS 74 (226)
T PRK13256 58 MLFFLSKGVKVIGIELS 74 (226)
T ss_pred HHHHHhCCCcEEEEecC
Confidence 44567779999999954
No 421
>COG3675 Predicted lipase [Lipid metabolism]
Probab=22.35 E-value=42 Score=26.08 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.6
Q ss_pred CceEEeecChhHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~ 103 (208)
-+++++|||-|++++.-.+.
T Consensus 175 Yrig~tghS~g~aii~vrGt 194 (332)
T COG3675 175 YRIGITGHSSGGAIICVRGT 194 (332)
T ss_pred eEEEEEeecCCccEEEEecc
Confidence 57999999999999865555
No 422
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=22.31 E-value=1.1e+02 Score=15.37 Aligned_cols=13 Identities=8% Similarity=0.516 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHh
Q 042897 194 GPFLQKLVNFIKS 206 (208)
Q Consensus 194 ~~~~~~i~~fl~~ 206 (208)
+++.++|.+|++.
T Consensus 10 eryfddiqkwirn 22 (40)
T PF13124_consen 10 ERYFDDIQKWIRN 22 (40)
T ss_pred HHHHHHHHHHHHH
Confidence 5678888888874
No 423
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=22.29 E-value=2e+02 Score=21.79 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=23.3
Q ss_pred EEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec
Q 042897 3 LLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID 41 (208)
Q Consensus 3 ~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d 41 (208)
.|+++.|.|-+.|+ .-.+++.+.++|+.|.++-
T Consensus 62 ~V~VlcG~GNNGGD------Glv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 62 RVLLVCGPGNNGGD------GLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred eEEEEECCCCCchh------HHHHHHHHHHCCCeEEEEE
Confidence 57788886644443 4556788888899887654
No 424
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=22.24 E-value=2.1e+02 Score=21.33 Aligned_cols=27 Identities=4% Similarity=0.185 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhcCCCcceEEEEeCCCCc
Q 042897 153 NRGVYYYETLKKSEWHGKAEFYQTLGEDH 181 (208)
Q Consensus 153 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~H 181 (208)
...+.+++.|++.|. +|.+..+++...
T Consensus 49 saMRhfa~~L~~~G~--~V~Y~~~~~~~~ 75 (224)
T PF04244_consen 49 SAMRHFADELRAKGF--RVHYIELDDPEN 75 (224)
T ss_dssp HHHHHHHHHHHHTT----EEEE-TT-TT-
T ss_pred HHHHHHHHHHHhCCC--EEEEEeCCCccc
Confidence 356889999999998 999999886443
No 425
>PLN02564 6-phosphofructokinase
Probab=22.21 E-value=4.1e+02 Score=22.53 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=25.6
Q ss_pred CCchhhHHHHHHHHHHhhccCCCCCCcccCCCCCCceE---EeecChhHHHHHHHHHH
Q 042897 50 LPIAHEDSWAGLEWVASHSYGQGPEPLLNRHADFGRVF---LAGESAGANIAHYVAVQ 104 (208)
Q Consensus 50 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~---l~G~S~GG~~a~~~~~~ 104 (208)
|.+.++.+.++++-+....... .++++ ++|.+. |++|+..+..
T Consensus 228 FdTAv~~~~~aI~~i~~tA~S~-----------~~rv~iVEvMGR~a-G~LAl~aaLA 273 (484)
T PLN02564 228 FDTAVEEAQRAINAAHVEAESV-----------ENGIGLVKLMGRYS-GFIAMYATLA 273 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------CCCEEEEEECCCCH-HHHHHHHHHh
Confidence 4567777888888776654321 13554 445544 5777666543
No 426
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=22.00 E-value=1.1e+02 Score=20.34 Aligned_cols=41 Identities=10% Similarity=0.036 Sum_probs=21.8
Q ss_pred CEEEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEecC
Q 042897 2 PLLIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITIDY 42 (208)
Q Consensus 2 P~vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d~ 42 (208)
|+||++..+.|+............+...+.+.|+.++.+..
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~ 65 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGP 65 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeC
Confidence 56677665566655443211112222333456888888863
No 427
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=21.78 E-value=2.2e+02 Score=22.14 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=16.0
Q ss_pred CCceEEeecChhHHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVAV 103 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~~ 103 (208)
...-+++|||+|=+.|+.++-
T Consensus 83 i~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 83 IKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp HCESEEEESTTHHHHHHHHTT
T ss_pred cccceeeccchhhHHHHHHCC
Confidence 355678999999988876653
No 428
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=21.71 E-value=1.2e+02 Score=20.56 Aligned_cols=31 Identities=6% Similarity=-0.002 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhccCCCCCCcccCCCCCCceEEeecChhHHHHH
Q 042897 56 DSWAGLEWVASHSYGQGPEPLLNRHADFGRVFLAGESAGANIAH 99 (208)
Q Consensus 56 d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~ 99 (208)
++...+.+.... ...+.|+|+||+-=|.+..
T Consensus 41 ~~~~sl~~av~~-------------l~~~~IiV~gHt~Cg~~~a 71 (142)
T cd03379 41 DAIRSLVVSVYL-------------LGTREIIVIHHTDCGMLTF 71 (142)
T ss_pred hHHHHHHHHHHH-------------hCCCEEEEEeecCCcceEe
Confidence 566677777665 4568999999986555543
No 429
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=21.68 E-value=1.6e+02 Score=18.10 Aligned_cols=9 Identities=0% Similarity=0.058 Sum_probs=4.7
Q ss_pred HHHHhCCcE
Q 042897 28 SLVVKANIV 36 (208)
Q Consensus 28 ~~~~~~g~~ 36 (208)
..+.+.||.
T Consensus 79 ~~L~~~G~~ 87 (101)
T cd01518 79 AYLKERGFK 87 (101)
T ss_pred HHHHHhCCc
Confidence 344555663
No 430
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=21.66 E-value=1.1e+02 Score=23.27 Aligned_cols=8 Identities=38% Similarity=0.895 Sum_probs=5.3
Q ss_pred EEEEcCCc
Q 042897 4 LIHYHGGG 11 (208)
Q Consensus 4 vi~~HGg~ 11 (208)
+|.+||||
T Consensus 31 ~VlVHGgg 38 (268)
T PRK14058 31 VVLVHGGS 38 (268)
T ss_pred EEEEeCCH
Confidence 46677765
No 431
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=21.26 E-value=3.9e+02 Score=20.62 Aligned_cols=20 Identities=5% Similarity=0.003 Sum_probs=15.2
Q ss_pred CCceEEeecChhHHHHHHHH
Q 042897 83 FGRVFLAGESAGANIAHYVA 102 (208)
Q Consensus 83 ~~~i~l~G~S~GG~~a~~~~ 102 (208)
..+.+|...|.-.|+|..+-
T Consensus 254 ~a~l~I~~DSgp~HlAaa~g 273 (319)
T TIGR02193 254 GADAVVGVDTGLTHLAAALD 273 (319)
T ss_pred cCCEEEeCCChHHHHHHHcC
Confidence 36788888888888886443
No 432
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=20.96 E-value=2.4e+02 Score=22.71 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 042897 23 KRFLTSLVVKANIVAITIDYRL 44 (208)
Q Consensus 23 ~~~~~~~~~~~g~~v~~~d~~~ 44 (208)
..+..+++++.|..++-..|..
T Consensus 219 Ia~AaRiaaELGADIVKv~yp~ 240 (348)
T PRK09250 219 TGQANHLAATIGADIIKQKLPT 240 (348)
T ss_pred HHHHHHHHHHHcCCEEEecCCC
Confidence 4444555555555555555553
No 433
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=20.76 E-value=4.4e+02 Score=21.67 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=35.0
Q ss_pred ChhhHHHHHHHHHhcCCCcceEEEEeCCCCccccccCCCCCchHHHHHHHHHHHHhc
Q 042897 151 LRNRGVYYYETLKKSEWHGKAEFYQTLGEDHCFHMFNPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 151 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~i~~fl~~~ 207 (208)
-+++.+.+.+.+++.|. +++.++.+.++.-..+.. .-.+++...+||++.
T Consensus 139 hidhl~allka~~erg~-~ei~vH~~tDGRDt~p~s------~vgfLe~~l~fLr~~ 188 (531)
T KOG4513|consen 139 HIDHLQALLKALAERGA-KEIRVHILTDGRDTLPGS------SVGFLEADLDFLRKV 188 (531)
T ss_pred hHHHHHHHHHHHHhcCC-ceEEEEEecCCccCCCCc------chhhHHHHHHHHHHc
Confidence 45788888999999985 488888887755433221 135688888888754
No 434
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.70 E-value=4e+02 Score=20.52 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=28.0
Q ss_pred CCEEEEEcCCccccCC--CCCchhHHHHHHHHHhCCcEEEEecCCCCC
Q 042897 1 LPLLIHYHGGGFCLGS--ALDMPFKRFLTSLVVKANIVAITIDYRLAP 46 (208)
Q Consensus 1 ~P~vi~~HGg~~~~~~--~~~~~~~~~~~~~~~~~g~~v~~~d~~~~~ 46 (208)
.|+|+|+.+-|....+ ..+.....+..++.++.|..++-.+|...+
T Consensus 144 mp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~ 191 (265)
T COG1830 144 MPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP 191 (265)
T ss_pred CceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh
Confidence 3777777764433322 122233555677888888888888887654
No 435
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.69 E-value=2.9e+02 Score=19.29 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=15.5
Q ss_pred CceEEeecChhHHHHHHHHHH
Q 042897 84 GRVFLAGESAGANIAHYVAVQ 104 (208)
Q Consensus 84 ~~i~l~G~S~GG~~a~~~~~~ 104 (208)
++|+++|...-+.+|..+..+
T Consensus 34 ~~I~i~G~G~S~~~A~~~~~~ 54 (179)
T cd05005 34 KRIFVYGAGRSGLVAKAFAMR 54 (179)
T ss_pred CeEEEEecChhHHHHHHHHHH
Confidence 799999987776666666543
No 436
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=20.44 E-value=94 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=16.8
Q ss_pred eEEeecChhHHHHHHHHHHH
Q 042897 86 VFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 86 i~l~G~S~GG~~a~~~~~~~ 105 (208)
-.+.|-|+|+.++..++...
T Consensus 34 ~~i~GtSAGAl~aa~~asg~ 53 (252)
T cd07221 34 RMFFGASAGALHCVTFLSGL 53 (252)
T ss_pred CEEEEEcHHHHHHHHHHhCC
Confidence 46999999999999888643
No 437
>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.
Probab=20.38 E-value=2.2e+02 Score=18.69 Aligned_cols=14 Identities=0% Similarity=0.090 Sum_probs=10.6
Q ss_pred HHHHHhCCcEEEEe
Q 042897 27 TSLVVKANIVAITI 40 (208)
Q Consensus 27 ~~~~~~~g~~v~~~ 40 (208)
...+.+.|+.|+.+
T Consensus 97 ~~~L~~~GW~ViRv 110 (115)
T cd00221 97 QAALERLGWRVLRV 110 (115)
T ss_pred HHHHHHCcCEEEEE
Confidence 45667889998865
No 438
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=20.35 E-value=5e+02 Score=21.46 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCCCc-------------hhh------HH--------HHHHHHHHhhccCCCCCC
Q 042897 23 KRFLTSLVVKANIVAITIDYRLAPEHHLPI-------------AHE------DS--------WAGLEWVASHSYGQGPEP 75 (208)
Q Consensus 23 ~~~~~~~~~~~g~~v~~~d~~~~~~~~~~~-------------~~~------d~--------~~~~~~l~~~~~~~~~~~ 75 (208)
..|+++.+.+.|..|+.+|--..+...++. ..+ |- ..+.+++.+...+
T Consensus 17 ~~yl~~~i~~~G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~~ga~~~v~~l~~~----- 91 (403)
T PF06792_consen 17 LLYLRDQIEAQGVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMARGAARFVSDLYDE----- 91 (403)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 577888889999999999975543322220 011 11 1122333332110
Q ss_pred cccCCCCCCceEEeecChhHHHHHHHHHHH
Q 042897 76 LLNRHADFGRVFLAGESAGANIAHYVAVQL 105 (208)
Q Consensus 76 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~~ 105 (208)
-..+-|+-+|-|+|..++..++...
T Consensus 92 -----g~i~Gvi~~GGs~GT~lat~aMr~L 116 (403)
T PF06792_consen 92 -----GKIDGVIGIGGSGGTALATAAMRAL 116 (403)
T ss_pred -----CCccEEEEecCCccHHHHHHHHHhC
Confidence 2346788999999999999888755
No 439
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=20.31 E-value=1.8e+02 Score=21.29 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=22.9
Q ss_pred EEEEcCCccccCCCCCchhHHHHHHHHHhCCcEEEEec
Q 042897 4 LIHYHGGGFCLGSALDMPFKRFLTSLVVKANIVAITID 41 (208)
Q Consensus 4 vi~~HGg~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~d 41 (208)
|+.+.|.|-+.|+ ...+++.+...|+.|.++-
T Consensus 52 v~vlcG~GnNGGD------G~VaAR~L~~~G~~V~v~~ 83 (203)
T COG0062 52 VLVLCGPGNNGGD------GLVAARHLKAAGYAVTVLL 83 (203)
T ss_pred EEEEECCCCccHH------HHHHHHHHHhCCCceEEEE
Confidence 7788887766554 4556888898997766653
No 440
>PRK13604 luxD acyl transferase; Provisional
Probab=20.17 E-value=4.4e+02 Score=20.79 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=39.3
Q ss_pred cEEEEeeCCCCChhhHHHHHHHHHhcCCCcceEEEEeCCCCc-ccccc---CCCCCchHHHHHHHHHHHHhc
Q 042897 140 RVLVCVAEKDGLRNRGVYYYETLKKSEWHGKAEFYQTLGEDH-CFHMF---NPKSKNVGPFLQKLVNFIKST 207 (208)
Q Consensus 140 p~li~~G~~D~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~H-~~~~~---~~~~~~~~~~~~~i~~fl~~~ 207 (208)
.+++.||-.... .....+++.|.+.|. .+..|+-.+| +-.-. .........-...+++|++++
T Consensus 39 ~vIi~HGf~~~~-~~~~~~A~~La~~G~----~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~ 105 (307)
T PRK13604 39 TILIASGFARRM-DHFAGLAEYLSSNGF----HVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTR 105 (307)
T ss_pred EEEEeCCCCCCh-HHHHHHHHHHHHCCC----EEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhc
Confidence 588899988853 457889999999987 6677765555 31110 001112234455678888763
No 441
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=20.05 E-value=2e+02 Score=19.24 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=13.2
Q ss_pred EEEEeeCCCCChhhHHHHHHHHHhcCC
Q 042897 141 VLVCVAEKDGLRNRGVYYYETLKKSEW 167 (208)
Q Consensus 141 ~li~~G~~D~~~~~~~~~~~~l~~~g~ 167 (208)
+||+||+++... .++...|++.+.
T Consensus 2 VFIvhg~~~~~~---~~v~~~L~~~~~ 25 (125)
T PF10137_consen 2 VFIVHGRDLAAA---EAVERFLEKLGL 25 (125)
T ss_pred EEEEeCCCHHHH---HHHHHHHHhCCC
Confidence 788999444333 334445555544
No 442
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=20.00 E-value=3.9e+02 Score=20.15 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=22.9
Q ss_pred cEEEEeeCCCC--ChhhHHHHHHHHHhcCCCcceEEEEeCC
Q 042897 140 RVLVCVAEKDG--LRNRGVYYYETLKKSEWHGKAEFYQTLG 178 (208)
Q Consensus 140 p~li~~G~~D~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 178 (208)
..++++|++|. +.+.+....+..+++++ +.+++.+..
T Consensus 34 kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i--~LEm~yvGK 72 (235)
T PF14577_consen 34 KYIFIYGGEDMEWIQEFTKAARKVAKAADI--QLEMVYVGK 72 (235)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHhcCC--ceEEEEecC
Confidence 58888999986 33444444444467765 666666544
Done!