Query 042898
Match_columns 135
No_of_seqs 110 out of 277
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 10:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14547 Hydrophob_seed: Hydro 100.0 4.9E-33 1.1E-37 198.4 3.2 80 45-125 1-81 (85)
2 cd01958 HPS_like HPS_like: Hyd 100.0 1.4E-33 2.9E-38 201.8 -0.1 79 44-124 2-81 (85)
3 cd01959 nsLTP2 nsLTP2: Non-spe 96.1 0.0007 1.5E-08 46.1 -1.7 63 50-124 3-65 (66)
4 smart00499 AAI Plant lipid tra 95.4 0.0024 5.2E-08 40.8 -1.2 69 47-123 2-75 (79)
5 PF14368 LTP_2: Probable lipid 94.3 0.0043 9.2E-08 42.2 -2.2 54 69-124 39-93 (96)
6 cd00010 AAI_LTSS AAI_LTSS: Alp 91.1 0.036 7.8E-07 35.6 -1.1 32 70-102 13-44 (63)
7 cd04660 nsLTP_like nsLTP_like: 89.2 0.051 1.1E-06 36.7 -1.7 67 49-124 4-70 (73)
8 cd01960 nsLTP1 nsLTP1: Non-spe 81.5 0.26 5.7E-06 34.0 -1.2 69 50-124 7-80 (89)
9 PHA01732 proline-rich protein 75.6 4.3 9.2E-05 30.1 3.5 6 49-54 43-48 (94)
10 PF00234 Tryp_alpha_amyl: Prot 71.5 0.48 1E-05 32.1 -2.1 65 51-124 13-87 (90)
11 PF01690 PLRV_ORF5: Potato lea 49.3 17 0.00037 33.5 3.1 12 16-27 5-16 (465)
12 KOG3671 Actin regulatory prote 47.6 26 0.00057 33.0 4.0 16 83-98 489-504 (569)
13 PF02084 Bindin: Bindin; Inte 24.0 32 0.0007 29.3 0.6 20 92-112 105-124 (238)
14 PHA03211 serine/threonine kina 20.7 1.5E+02 0.0033 26.1 4.1 14 9-22 25-38 (461)
No 1
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=99.97 E-value=4.9e-33 Score=198.39 Aligned_cols=80 Identities=48% Similarity=0.890 Sum_probs=77.1
Q ss_pred CCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhh-hcCCCcC
Q 042898 45 TGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLV-STTVANI 123 (135)
Q Consensus 45 ~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl-~CGk~~p 123 (135)
+||+|++|||+|+||| |++++.+|.+.+++||++|+||+|+|||+|||+|+|+|+||+|++++|++|++|+ .|||+.|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 6999999999999999999999999999999999999999999999999999999 8999987
Q ss_pred CC
Q 042898 124 RQ 125 (135)
Q Consensus 124 ~~ 125 (135)
+.
T Consensus 80 ~g 81 (85)
T PF14547_consen 80 SG 81 (85)
T ss_pred CC
Confidence 64
No 2
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=99.97 E-value=1.4e-33 Score=201.83 Aligned_cols=79 Identities=51% Similarity=0.849 Sum_probs=76.1
Q ss_pred CCCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhh-hcCCCc
Q 042898 44 QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLV-STTVAN 122 (135)
Q Consensus 44 ~~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl-~CGk~~ 122 (135)
++||||++|||+|+|||| ++++.+|++++++||++|+||+|+|||+|||||||+|+|| |++|+|++|++|+ +|||+.
T Consensus 2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcC
Confidence 689999999999999995 8899999999999999999999999999999999999999 9999999999999 899998
Q ss_pred CC
Q 042898 123 IR 124 (135)
Q Consensus 123 p~ 124 (135)
|+
T Consensus 80 P~ 81 (85)
T cd01958 80 PP 81 (85)
T ss_pred CC
Confidence 86
No 3
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.07 E-value=0.0007 Score=46.10 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=46.9
Q ss_pred ccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcCC
Q 042898 50 ALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIR 124 (135)
Q Consensus 50 aLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p~ 124 (135)
..+|..|...+. .|.++...||.-|+. +--|||.-+|...|+ .-|+.+-++++.-.||..+|+
T Consensus 3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~~A~~l~~~Cgv~~P~ 65 (66)
T cd01959 3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSPNARKVLAACGVPYPN 65 (66)
T ss_pred hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcHHHHHHHHHcCCCCCC
Confidence 357888987542 356788899999997 237999999987676 446666677666699998874
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=95.38 E-value=0.0024 Score=40.78 Aligned_cols=69 Identities=28% Similarity=0.435 Sum_probs=43.7
Q ss_pred CccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceee----eccccchhhhh-hcCCC
Q 042898 47 PIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLIN----LLVPISLQVLV-STTVA 121 (135)
Q Consensus 47 P~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~In----l~iPi~L~lLl-~CGk~ 121 (135)
.....++..|...+.+- .....+.+.||..++++. ...|+|.+++..+.+ +. ++...+. .|- .||..
T Consensus 2 ~~~~~~~~~c~~~~~~~---~~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~-~~~~~~~~~~~a~-~lp~~C~~~ 73 (79)
T smart00499 2 GQVLLQLAPCLSYLTGG---SPGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLG-ILEIPGVNAQNAA-SLPSACGVP 73 (79)
T ss_pred hhhhhhHHhhHHHHcCC---CCCCCCchHHHHHHHHhc---ccCCcchhhhccccc-ccchhhhhHHHHH-hhHHhcCCC
Confidence 33444555676655311 012346688999999997 777999999998776 32 2333233 344 89987
Q ss_pred cC
Q 042898 122 NI 123 (135)
Q Consensus 122 ~p 123 (135)
.+
T Consensus 74 ~~ 75 (79)
T smart00499 74 PP 75 (79)
T ss_pred CC
Confidence 66
No 5
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=94.30 E-value=0.0043 Score=42.23 Aligned_cols=54 Identities=19% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCCCCCCCCccccCCcccchhhhhhHhhhccc-cceeeeccccchhhhhhcCCCcCC
Q 042898 69 GHNAKEKCCPLLQGLADLDAAICLCTAIRVNA-LKLINLLVPISLQVLVSTTVANIR 124 (135)
Q Consensus 69 G~p~~~~CC~LI~GL~dldAAvCLCtAiKAnv-LG~Inl~iPi~L~lLl~CGk~~p~ 124 (135)
+..+...||.-++.+.+. ...|||..++... .+ +++|..-.+.+.-.||...+.
T Consensus 39 ~~~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~-~~in~~~a~~Lp~~Cg~~~~~ 93 (96)
T PF14368_consen 39 GPAPSAACCSALKSVVQA-DPPCLCQLLNSPGAPG-FGINVTRALALPAACGVPVPP 93 (96)
T ss_dssp -----HHHHHHHCC-----HCCHHHCCCC-CCHCH-HCCTCHHHHHHHHHCTSS-S-
T ss_pred CCCCCHHHHHHHHHhccC-CCCCHHHhcCcccccc-CCcCHHHHHHHHHHcCCCCCC
Confidence 345678899999999774 4899999999987 45 566665555444499998875
No 6
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=91.13 E-value=0.036 Score=35.56 Aligned_cols=32 Identities=25% Similarity=0.586 Sum_probs=25.1
Q ss_pred CCCCCCCCccccCCcccchhhhhhHhhhccccc
Q 042898 70 HNAKEKCCPLLQGLADLDAAICLCTAIRVNALK 102 (135)
Q Consensus 70 ~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG 102 (135)
..+...||.-++.+.+.| ..|||..+|.....
T Consensus 13 ~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~ 44 (63)
T cd00010 13 TAPPSDCCSGLKSVVKSD-PKCLCAALNGPGAS 44 (63)
T ss_pred CCCChHHHHHHHHHHhcC-hhhHHHHHcCcccc
Confidence 346788999999987764 46999999986644
No 7
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=89.22 E-value=0.051 Score=36.69 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=40.7
Q ss_pred cccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcCC
Q 042898 49 DALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANIR 124 (135)
Q Consensus 49 daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p~ 124 (135)
|..+|..|...+.| -.-...+.+.||+-|+.+ |. .|+|..+++..+.+ +|..-+.+|--.||...+.
T Consensus 4 ~~~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~--i~~~~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 4 DLDLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI--IDPDKAVYLPAKCGLPLPP 70 (73)
T ss_pred CHHHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc--cCHHHHHHHHHHcCCCCCC
Confidence 33466778775520 000123567799999985 22 39999999876652 4444344333389998774
No 8
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=81.48 E-value=0.26 Score=33.99 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=41.7
Q ss_pred ccccccccccccchhhcccCCCCCCCCCccccCCccc----chhhhhhHhhhccccceee-eccccchhhhhhcCCCcCC
Q 042898 50 ALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL----DAAICLCTAIRVNALKLIN-LLVPISLQVLVSTTVANIR 124 (135)
Q Consensus 50 aLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl----dAAvCLCtAiKAnvLG~In-l~iPi~L~lLl~CGk~~p~ 124 (135)
..+|.-|.+.+.|- +..+...||.-++.|.+. +...|+|.-+|....+ +. +|...+++|=-.||...+.
T Consensus 7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHHHHHhChHhcccCCCC
Confidence 44677787766421 234667899999998654 2234666667776666 33 4443333332289987653
No 9
>PHA01732 proline-rich protein
Probab=75.64 E-value=4.3 Score=30.12 Aligned_cols=6 Identities=33% Similarity=0.434 Sum_probs=2.7
Q ss_pred cccccc
Q 042898 49 DALKLG 54 (135)
Q Consensus 49 daLkLg 54 (135)
||-|+.
T Consensus 43 ~apki~ 48 (94)
T PHA01732 43 EAPKIR 48 (94)
T ss_pred chhHHH
Confidence 444443
No 10
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=71.48 E-value=0.48 Score=32.06 Aligned_cols=65 Identities=22% Similarity=0.437 Sum_probs=42.5
Q ss_pred cccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhcccccee----------eeccccchhhhhhcCC
Q 042898 51 LKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLI----------NLLVPISLQVLVSTTV 120 (135)
Q Consensus 51 LkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~I----------nl~iPi~L~lLl~CGk 120 (135)
..|..|...+.|- - ..+.+.||.-|+.| ...|.|.+||..+.+++ .++.-.+.+|--.||.
T Consensus 13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v 83 (90)
T PF00234_consen 13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNV 83 (90)
T ss_dssp SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCC
Confidence 4567776655311 1 13457799999998 88999999999888721 3444333333338998
Q ss_pred CcCC
Q 042898 121 ANIR 124 (135)
Q Consensus 121 ~~p~ 124 (135)
..+.
T Consensus 84 ~~~~ 87 (90)
T PF00234_consen 84 SPPY 87 (90)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 7764
No 11
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=49.25 E-value=17 Score=33.49 Aligned_cols=12 Identities=58% Similarity=1.276 Sum_probs=4.7
Q ss_pred CCCCCCCCCCCC
Q 042898 16 PPPPPTVKPTPA 27 (135)
Q Consensus 16 ~~p~p~~~p~p~ 27 (135)
|+|.|..+|+|+
T Consensus 5 p~P~P~P~P~P~ 16 (465)
T PF01690_consen 5 PPPSPGPSPTPP 16 (465)
T ss_pred CCCCCCCCCCCC
Confidence 334444344333
No 12
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=47.65 E-value=26 Score=33.03 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=8.4
Q ss_pred CcccchhhhhhHhhhc
Q 042898 83 LADLDAAICLCTAIRV 98 (135)
Q Consensus 83 L~dldAAvCLCtAiKA 98 (135)
|..-|+-.=|-..||+
T Consensus 489 ~~~~dgR~~LmaqIRq 504 (569)
T KOG3671|consen 489 LSSGDGRDALMAQIRQ 504 (569)
T ss_pred CcCcccHHHHHHHHHh
Confidence 3344444456666664
No 13
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=23.97 E-value=32 Score=29.28 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=14.4
Q ss_pred hhHhhhccccceeeeccccch
Q 042898 92 LCTAIRVNALKLINLLVPISL 112 (135)
Q Consensus 92 LCtAiKAnvLG~Inl~iPi~L 112 (135)
+-..||| |||--+||+||+|
T Consensus 105 vm~~ika-vLgaTKiDLPVDI 124 (238)
T PF02084_consen 105 VMEDIKA-VLGATKIDLPVDI 124 (238)
T ss_pred HHHHHHH-Hhccccccccccc
Confidence 4678888 6776677777764
No 14
>PHA03211 serine/threonine kinase US3; Provisional
Probab=20.72 E-value=1.5e+02 Score=26.14 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCCC
Q 042898 9 PSQVSKPPPPPPTV 22 (135)
Q Consensus 9 ~~~v~~~~~p~p~~ 22 (135)
|...+..+.|+++-
T Consensus 25 ~~~~~~~~~~~~~~ 38 (461)
T PHA03211 25 PETTTRCVFPPETF 38 (461)
T ss_pred CCCCCCCCCCCCCC
Confidence 33344444444443
Done!