Query 042898
Match_columns 135
No_of_seqs 110 out of 277
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 99.9 1.4E-26 4.8E-31 163.5 -0.5 69 43-125 5-74 (80)
2 1l6h_A LTP2, non-specific lipi 95.8 0.00052 1.8E-08 45.5 -2.2 61 51-123 6-66 (69)
3 1n89_A Lipid transfer protein; 95.6 0.00064 2.2E-08 44.8 -2.4 61 51-123 5-65 (67)
4 2rkn_A DIR1 protein, AT5G48485 94.4 0.0034 1.2E-07 41.8 -1.5 69 44-123 3-74 (77)
5 1siy_A LTP 1, NS-LTP1, nonspec 89.7 0.014 4.7E-07 40.3 -3.4 70 46-124 3-79 (91)
6 2alg_A Non-specific lipid tran 88.1 0.0088 3E-07 41.3 -5.3 71 46-124 4-80 (92)
7 1bwo_A NS-LTP1, nonspecific li 87.2 0.011 3.7E-07 40.8 -5.2 66 50-124 7-79 (90)
8 1afh_A Maize nonspecific lipid 76.1 0.12 4.1E-06 35.6 -3.3 71 46-123 4-80 (93)
9 1t12_A LTP 1, nonspecific lipi 56.0 0.47 1.6E-05 32.5 -3.6 70 46-124 4-79 (91)
10 2ljo_A Non-specific lipid-tran 51.6 0.38 1.3E-05 33.4 -4.7 67 51-123 9-79 (93)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.91 E-value=1.4e-26 Score=163.50 Aligned_cols=69 Identities=33% Similarity=0.740 Sum_probs=60.5
Q ss_pred CCCCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhh-hcCCC
Q 042898 43 LQTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLV-STTVA 121 (135)
Q Consensus 43 ~~~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl-~CGk~ 121 (135)
.++|| |||+|+|||||++ | ++++||++|+||+|+|||+|||||||+ || | +|+|++|++|+ .|||+
T Consensus 5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik~--Lg-i-lnlpv~L~llln~Cgk~ 70 (80)
T 1hyp_A 5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLRA--LG-I-LNLNRNLQLILNSCGRS 70 (80)
T ss_dssp -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHHH--HT-C-SCHHHHHHHHHHHTTCS
T ss_pred CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhccc--cc-e-eecChhHHHHHHHhCCc
Confidence 35799 8999999998643 2 568999999999999999999999994 99 7 89999999999 89999
Q ss_pred cCCC
Q 042898 122 NIRQ 125 (135)
Q Consensus 122 ~p~~ 125 (135)
.|+.
T Consensus 71 ~P~g 74 (80)
T 1hyp_A 71 YPSN 74 (80)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 8853
No 2
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=95.85 E-value=0.00052 Score=45.50 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=44.5
Q ss_pred cccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcC
Q 042898 51 LKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANI 123 (135)
Q Consensus 51 LkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p 123 (135)
.+|..|...+. -|.++...||.-|++ +..|||..+|.-.++ ..||.+.+.++.-.||..+|
T Consensus 6 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P 66 (69)
T 1l6h_A 6 GQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSPNARKAVSSCGIALP 66 (69)
T ss_dssp TTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTTTGGGCCCCCSSCSC
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence 36677877652 244567789999985 488999999976666 55677667765559999876
No 3
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=95.60 E-value=0.00064 Score=44.80 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=44.2
Q ss_pred cccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhccccceeeeccccchhhhhhcCCCcC
Q 042898 51 LKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRVNALKLINLLVPISLQVLVSTTVANI 123 (135)
Q Consensus 51 LkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p 123 (135)
.+|..|...+. -|.++...||.-|++ +..|||..+|.-.++ ..||.+.+.++.-.||..+|
T Consensus 5 ~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSPHARDTLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCHHHHHHHHHHTSCCS
T ss_pred hhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence 35677877552 244567789999985 488999999987666 45666667765559999876
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=94.41 E-value=0.0034 Score=41.85 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=45.7
Q ss_pred CCCCccccccccccccccchhhcccCCCCCCCCCccccCCcccchhhhhhHhhhc---cccceeeeccccchhhhhhcCC
Q 042898 44 QTGPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLDAAICLCTAIRV---NALKLINLLVPISLQVLVSTTV 120 (135)
Q Consensus 44 ~~CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dldAAvCLCtAiKA---nvLG~Inl~iPi~L~lLl~CGk 120 (135)
..|-.+..+|..|...+.| +-+..+...||.-|++ +| ..|||..++. .-+| ||...++++--.||.
T Consensus 3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~g---in~~~A~~LP~~Cgv 71 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFG---VDPELASALPKQCGL 71 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHT---BCHHHHHHHHHHTTC
T ss_pred chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcC---cCHHHHHHHHHHcCC
Confidence 4577777788888876631 1113456679999998 34 3899999883 3334 344445554449999
Q ss_pred CcC
Q 042898 121 ANI 123 (135)
Q Consensus 121 ~~p 123 (135)
..|
T Consensus 72 ~~p 74 (77)
T 2rkn_A 72 ANA 74 (77)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=89.68 E-value=0.014 Score=40.25 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=42.9
Q ss_pred CCccccccccccccccchhhcccCCCCCCCCCccccCCccc-----c-hhhhhhHhhhcccccee-eeccccchhhhhhc
Q 042898 46 GPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL-----D-AAICLCTAIRVNALKLI-NLLVPISLQVLVST 118 (135)
Q Consensus 46 CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl-----d-AAvCLCtAiKAnvLG~I-nl~iPi~L~lLl~C 118 (135)
|-....+|.-|.+.+.| |.++...||.-|++|.+. | -+.|||. |...-+ + .||...+++|--.|
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~~A~~LP~~C 73 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPNNAEALPGKC 73 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHHHHHHHHHHc
Confidence 54445667778776531 223666799999988543 3 2689997 433222 3 34554455544489
Q ss_pred CCCcCC
Q 042898 119 TVANIR 124 (135)
Q Consensus 119 Gk~~p~ 124 (135)
|...+-
T Consensus 74 gv~~p~ 79 (91)
T 1siy_A 74 GVNIPY 79 (91)
T ss_dssp TCCCSS
T ss_pred CCCCCC
Confidence 998763
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=88.14 E-value=0.0088 Score=41.31 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=44.4
Q ss_pred CCccccccccccccccchhhcccCCCCCCCCCccccCCccc-----c-hhhhhhHhhhccccceeeeccccchhhhhhcC
Q 042898 46 GPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL-----D-AAICLCTAIRVNALKLINLLVPISLQVLVSTT 119 (135)
Q Consensus 46 CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl-----d-AAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CG 119 (135)
|-....+|.-|...+.| |.++...||.-|++|... | -+.|||...++.-++ .||...+++|--.||
T Consensus 4 C~~v~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~~A~~LP~~Cg 75 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPNNAAALPGKCG 75 (92)
T ss_dssp HHHHHHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHHHHHHHHHHTT
T ss_pred hHHHHHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChHHHHHHHHHcC
Confidence 33334567888776631 223455799999988632 2 268999976666552 344444555444999
Q ss_pred CCcCC
Q 042898 120 VANIR 124 (135)
Q Consensus 120 k~~p~ 124 (135)
...+-
T Consensus 76 v~~p~ 80 (92)
T 2alg_A 76 VSIPY 80 (92)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98774
No 7
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=87.23 E-value=0.011 Score=40.78 Aligned_cols=66 Identities=21% Similarity=0.307 Sum_probs=40.0
Q ss_pred ccccccccccccchhhcccCCCCCCCCCccccCCccc-----c-hhhhhhHhhhcccccee-eeccccchhhhhhcCCCc
Q 042898 50 ALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL-----D-AAICLCTAIRVNALKLI-NLLVPISLQVLVSTTVAN 122 (135)
Q Consensus 50 aLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl-----d-AAvCLCtAiKAnvLG~I-nl~iPi~L~lLl~CGk~~ 122 (135)
..+|.-|.+.+.| |..+...||.-+++|... | .+.|||. |....+ + .||...+++|--.||...
T Consensus 7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClCl--k~~~~~-~~~in~~~A~~LP~~C~v~~ 77 (90)
T 1bwo_A 7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCL--KGIARG-IHNLNEDNARSIPPKCGVNL 77 (90)
T ss_dssp HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHH--HHHHTT-CTTCCHHHHHTHHHHHTCCC
T ss_pred HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCc--cCchhc-cCCcCHHHHHHHHHHcCCCC
Confidence 4567778776631 223566799999988642 1 2689994 433322 2 344444554444899987
Q ss_pred CC
Q 042898 123 IR 124 (135)
Q Consensus 123 p~ 124 (135)
+-
T Consensus 78 p~ 79 (90)
T 1bwo_A 78 PY 79 (90)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 8
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=76.10 E-value=0.12 Score=35.58 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=42.1
Q ss_pred CCccccccccccccccchhhcccCCCCCCCCCccccCCccc---c---hhhhhhHhhhccccceeeeccccchhhhhhcC
Q 042898 46 GPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADL---D---AAICLCTAIRVNALKLINLLVPISLQVLVSTT 119 (135)
Q Consensus 46 CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dl---d---AAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CG 119 (135)
|-....+|.-|.+.+.| -+..+...||.-|++|.+. . -+.|||....+.-++ .||...++.|=-.||
T Consensus 4 C~~v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~--~in~~~A~~LP~~C~ 76 (93)
T 1afh_A 4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS--GLNAGNAASIPSKCG 76 (93)
T ss_dssp SHHHHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST--TCCHHHHHHHHHHHH
T ss_pred hHHHHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc--CcCHHHHHHHHHHcC
Confidence 44445677888776631 1233555799999988531 1 268999755554442 233333444333899
Q ss_pred CCcC
Q 042898 120 VANI 123 (135)
Q Consensus 120 k~~p 123 (135)
.+.+
T Consensus 77 v~~p 80 (93)
T 1afh_A 77 VSIP 80 (93)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8766
No 9
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=55.97 E-value=0.47 Score=32.54 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCccccccccccccccchhhcccCCCCCCCCCccccCCcccc------hhhhhhHhhhccccceeeeccccchhhhhhcC
Q 042898 46 GPIDALKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLD------AAICLCTAIRVNALKLINLLVPISLQVLVSTT 119 (135)
Q Consensus 46 CP~daLkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dld------AAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CG 119 (135)
|-....+|.-|.+.+.| -+. +. .||.-|++|...- -+.|||..--++-++ .||...++.|=-.||
T Consensus 4 C~~v~~~L~pCl~y~~~-----~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A~~LP~~C~ 74 (91)
T 1t12_A 4 CGQVTSNLAPCLAYLRN-----TGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS--GINLGKAAGLPSTCG 74 (91)
T ss_dssp HHHHHHHTHHHHHHHTT-----SSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHTT
T ss_pred hHHHHHhccCcHHHHcC-----CCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC--CcChhHHHHHHHHcC
Confidence 33334567778776631 123 55 8999999986531 278999632223332 234433444333899
Q ss_pred CCcCC
Q 042898 120 VANIR 124 (135)
Q Consensus 120 k~~p~ 124 (135)
.+.+-
T Consensus 75 v~~p~ 79 (91)
T 1t12_A 75 VNIPY 79 (91)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98764
No 10
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=51.64 E-value=0.38 Score=33.41 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=39.3
Q ss_pred cccccccccccchhhcccCCCCCCCCCccccCCcccc----hhhhhhHhhhccccceeeeccccchhhhhhcCCCcC
Q 042898 51 LKLGACVDVPGGLIHIGLGHNAKEKCCPLLQGLADLD----AAICLCTAIRVNALKLINLLVPISLQVLVSTTVANI 123 (135)
Q Consensus 51 LkLgvCanVL~gLv~~~lG~p~~~~CC~LI~GL~dld----AAvCLCtAiKAnvLG~Inl~iPi~L~lLl~CGk~~p 123 (135)
..|.-|.+.+. -|..+..+||.=+++|.+.- .-.|+|..||...-++..||...++.|=-.||.+.|
T Consensus 9 ~~L~pCl~Yv~------g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p 79 (93)
T 2ljo_A 9 SDLSPCLTYLT------GGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP 79 (93)
T ss_dssp HHHHHHHHHHT------TSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred HHHHhHHHHHc------CCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence 34555655442 13335667999888886532 246888888875544234444334332228998877
Done!