Your job contains 1 sequence.
>042899
VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL
DVRVIFVDYVRPNRHYNTDASLVRQPAQSPKEN
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042899
(93 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 191 4.2e-15 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 179 7.9e-14 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 169 9.1e-13 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 153 4.5e-11 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 141 8.4e-10 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 137 2.2e-09 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 136 3.3e-09 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 134 4.7e-09 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 133 5.9e-09 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 129 1.6e-08 1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi... 128 2.0e-08 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 127 2.6e-08 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 126 3.3e-08 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 126 3.3e-08 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 126 3.3e-08 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 123 3.4e-08 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 123 4.4e-08 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 124 5.3e-08 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 127 5.5e-08 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 122 5.6e-08 2
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 6.8e-08 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 6.8e-08 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 6.8e-08 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 6.8e-08 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 6.8e-08 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 123 6.8e-08 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 6.8e-08 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 6.8e-08 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 123 6.8e-08 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 123 6.8e-08 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 123 6.8e-08 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 123 6.8e-08 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 7.2e-08 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 122 8.7e-08 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 122 8.7e-08 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 122 8.7e-08 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 123 9.4e-08 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 121 1.1e-07 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 121 1.1e-07 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 121 1.1e-07 1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi... 121 1.1e-07 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 121 1.2e-07 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 116 1.4e-07 2
TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi... 127 1.5e-07 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 128 1.7e-07 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 119 1.8e-07 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 2.0e-07 1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 118 2.3e-07 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 123 2.7e-07 1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein... 117 2.9e-07 1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 117 2.9e-07 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 117 2.9e-07 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 119 3.0e-07 2
UNIPROTKB|F1NJ85 - symbol:SNRNP35 "Uncharacterized protei... 120 3.5e-07 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 127 3.6e-07 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 122 4.2e-07 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 122 4.2e-07 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 115 4.8e-07 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 115 4.8e-07 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 119 4.9e-07 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 124 5.1e-07 1
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 118 5.9e-07 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 124 6.8e-07 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 121 6.9e-07 1
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 120 6.9e-07 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 125 7.0e-07 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 124 7.2e-07 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 115 8.4e-07 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 121 8.6e-07 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 123 8.7e-07 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 123 8.8e-07 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 122 9.3e-07 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 123 9.6e-07 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 123 9.6e-07 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 123 9.6e-07 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 123 9.6e-07 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 123 9.6e-07 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 123 9.6e-07 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 123 9.6e-07 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 123 9.8e-07 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 112 1.0e-06 1
UNIPROTKB|G4MYV6 - symbol:MGG_11418 "Nucleic acid-binding... 117 1.1e-06 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 116 1.1e-06 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 116 1.1e-06 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 118 1.2e-06 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 118 1.2e-06 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 118 1.2e-06 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 121 1.2e-06 1
TAIR|locus:2058141 - symbol:AT2G43370 species:3702 "Arabi... 118 1.2e-06 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 121 1.2e-06 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 121 1.2e-06 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 118 1.2e-06 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 121 1.2e-06 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 121 1.2e-06 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 121 1.2e-06 1
WARNING: Descriptions of 486 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 37/79 (46%), Positives = 56/79 (70%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFS+T+E L AFSQ+GQV K +IMD + R KG+ Y+T S++EEA+KAL+++N L+
Sbjct: 28 ISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D RV+ +D + +H D
Sbjct: 88 DGRVVILDTTKAAKHNPPD 106
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 35/71 (49%), Positives = 54/71 (76%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L++AFS+ GQV +A I+MD +RSKG+G++T ++ +EAQKAL++ N L
Sbjct: 41 LSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL 100
Query: 61 DVRVIFVDYVR 71
+ R IFVDY +
Sbjct: 101 NGRTIFVDYAK 111
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/68 (51%), Positives = 45/68 (66%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L DAF+ FGQ+ A +I D RSKG+G++T +T E+A+KA +MN LD V
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104
Query: 65 IFVDYVRP 72
IFVD RP
Sbjct: 105 IFVDPARP 112
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L D F QFG + ++MD NR KG+ ++ TEEEA KA+ M+ L
Sbjct: 84 LSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFL 143
Query: 61 DVRVIFVD 68
D RVIFV+
Sbjct: 144 DGRVIFVE 151
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT E L AF+QFG+V A ++ D SKG+G++ +T E++ K + M+ L
Sbjct: 63 LSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFL 122
Query: 61 DVRVIFVDYVRP---NRHYNTDASLVRQP 86
D VIF +Y RP ++ Y ++ R P
Sbjct: 123 DGWVIFAEYARPREQSQSYQPQNNMSRPP 151
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT + L FS FGQ+ +A +I D R KG+G++T +E++A+KAL ++ ++
Sbjct: 14 LSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIV 73
Query: 61 DVRVIFVDYVR 71
D R+IFV+ +
Sbjct: 74 DGRLIFVEVAK 84
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 136 (52.9 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT++ L +AFS++G + K +I D +RS+G+G++T E+A+ A+ MN +
Sbjct: 30 LSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQV 89
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 90 DGRMIRVD 97
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F TT+E L FS++GQV + ++ D RS+G+G++T E+A+ A++ MN +
Sbjct: 13 LNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L DAFS++G +T + + NRS+G+G++T ++A+ AL MN +
Sbjct: 12 LSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSV 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRTIRVD 79
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 24/68 (35%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT ++L + FS++G + +A ++ D NRS+G+G++ ++E EA A+ MN
Sbjct: 9 LAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEF 68
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 69 DGRIIRVD 76
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 22/72 (30%), Positives = 46/72 (63%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
FST+++ L FS FG++ + +I D RSKGY ++ +++++A A+ M++ + +
Sbjct: 49 FSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNG 108
Query: 63 RVIFVDYVRPNR 74
R+I++D +P +
Sbjct: 109 RMIYIDIAKPGK 120
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVDY-VRPN 73
D R I VD +RP+
Sbjct: 73 DGRQIRVDQPLRPS 86
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T++ L FS G VT II D RSKG GY+ TEEEA++A+ ++ LL
Sbjct: 10 MSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALL 69
Query: 61 DVRVIFVDYVRPNR 74
RVI V RP +
Sbjct: 70 RNRVITVSVARPQK 83
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F T +E L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 12 LNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAV 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRQIRVD 79
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T++ L FS G VT II D RSKG GY+ TEEEA++A+ ++ LL
Sbjct: 10 MSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALL 69
Query: 61 DVRVIFVDYVRPNR 74
RVI V RP +
Sbjct: 70 RNRVITVSVARPQK 83
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 123 (48.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 45 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 102
Query: 64 VIFV 67
+FV
Sbjct: 103 KVFV 106
Score = 116 (45.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 244 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 302 ALAQ--RKEERQAHLTNQYMQ 320
Score = 93 (37.8 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 141 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
Score = 35 (17.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 72 PNRHYNTDASL-VRQPA 87
P +H NT + ++QPA
Sbjct: 457 PQQHLNTQPQVAMQQPA 473
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 123 (48.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++MD G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 90 (36.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/60 (28%), Positives = 37/60 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L D FS++G ++ D +S+G+G+++ E+AQ+A+ +MN ++ ++I+V
Sbjct: 205 DKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV 263
Score = 35 (17.4 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 72 PNRHYNTDASL-VRQPA 87
P +H NT + ++QPA
Sbjct: 518 PQQHMNTQPQVTMQQPA 534
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 127 (49.8 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T+ L DAF ++G + +A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDL 73
Query: 61 DVRVIFVDYVRPNR 74
D R I VD +P++
Sbjct: 74 DGRTITVDKAQPHQ 87
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 122 (48.0 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 88 (36.0 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQKA+ +MN ++ + +FV
Sbjct: 205 ERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
Score = 35 (17.4 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 70 VRPNRHYNTDASL-VRQPA 87
VR +H NT + ++QPA
Sbjct: 516 VRNQQHLNTQPQVAMQQPA 534
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 123 (48.4 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T + L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+ + ++ D RS+G+G++T E+A+ A+ MN +
Sbjct: 13 LSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 123 (48.4 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 25 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 84
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 85 QGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 25 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 84
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 85 QGRKIRVNIAREN 97
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L AF+ FG+VT+AT+I D RS+G+G+++ S E+ A A+ +M+ L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 102 NGRQIRVN 109
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 2 SFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD 61
S S ++ L FS+FGQVT II + +S GYGY+ +++E+AQ A+ MN D
Sbjct: 85 SDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFD 144
Query: 62 VRVIFVDYVRP 72
R I V + +P
Sbjct: 145 GRFILVKFGQP 155
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 121 (47.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 115 (45.5 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 33 (16.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 70 VRPNRHYNTDASLVRQPAQSPK 91
VRP N + VR A P+
Sbjct: 442 VRPQHFQNMPNAAVRPSAPRPQ 463
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 116 (45.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+G+G++ T E AQ A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQNAISTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 110 (43.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
++ L D FSQFG++ ++ D S+G+G++ EEAQKA+V+MN + R+++
Sbjct: 204 EQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLY 262
Query: 67 V 67
V
Sbjct: 263 V 263
Score = 102 (41.0 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
Score = 82 (33.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
T+ ML + FS G + + D+ RS GY Y+ +A++AL MN
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTMN 73
Score = 37 (18.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 71 RPNRHYNTDASLVRQPAQS 89
RP+ Y AS+VR A S
Sbjct: 439 RPSSAYPPGASVVRPAAMS 457
>TAIR|locus:2088756 [details] [associations]
symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
Uniprot:Q8L440
Length = 374
Score = 127 (49.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 289 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKII 348
Query: 61 DVRVIFVDYVR 71
+ +I VD +
Sbjct: 349 NGWMIVVDVAK 359
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 128 (50.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S + E+L F++FG+V++A +I D+ +SKGYG+++ ++ A+ A+ MN +
Sbjct: 232 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWI 291
Query: 61 DVRVIFVDYV-RPNRHYNTDASLVRQPAQSPK 91
R + ++ R N N D Q S K
Sbjct: 292 GKRAVRTNWAARKNSEENRDKLTFEQVFNSTK 323
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A + MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 123 (48.4 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 21/68 (30%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F T ++ L AF+++G++++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 12 LNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSV 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRQIRVD 79
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 123 (48.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+ ++T + E A A+ MN L
Sbjct: 13 LNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPMNGKSL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D F FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIRVDH 81
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T E L FSQFG V + II D RS+G+G++T E+ + A+ +MN L
Sbjct: 13 LAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL 72
Query: 61 DVRVIFVD 68
D RVI V+
Sbjct: 73 DGRVITVN 80
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 119 (46.9 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D +N SKG+G++ TEE A++A+ MN MLL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCD--ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T ++ + G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYIQ 384
Score = 99 (39.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 14 FSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
F +FGQV ++ D G +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 211 FGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
Score = 31 (16.0 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 73 NRHYNTDASLVRQPA 87
N + +A LV+QP+
Sbjct: 517 NSQQHLNAQLVQQPS 531
>UNIPROTKB|F1NJ85 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 OMA:QHEVFVD EMBL:AADN02034882
IPI:IPI00586472 ProteinModelPortal:F1NJ85
Ensembl:ENSGALT00000005257 Uniprot:F1NJ85
Length = 245
Score = 120 (47.3 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ TT+E L + FS++G + K ++ D+ SKGY ++ E KA D N++++
Sbjct: 63 LNLQTTEEKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANRLVI 122
Query: 61 DVRVIFVDY 69
D +FVD+
Sbjct: 123 DQHEVFVDF 131
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 127 (49.8 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+EEA++A+ MN M L+ R
Sbjct: 109 SIDSKTLYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEEAERAIEKMNGMFLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + R
Sbjct: 167 KVFVGRFKSRR 177
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A + M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 318 ERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 96 (38.9 bits), Expect = 0.00076, P = 0.00076
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D FS+FG ++ D +SKG+G+++ E+A+KA+ +MN L+ + I+V
Sbjct: 205 ERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 122 (48.0 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L FS G+V A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 32 TQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTI 91
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 92 KVSYARPSSEVIKDANL 108
Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 69 YVRPNRH 75
+ H
Sbjct: 319 FKTNKSH 325
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 122 (48.0 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L FS G+V A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 32 TQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTI 91
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 92 KVSYARPSSEVIKDANL 108
Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 69 YVRPNRH 75
+ H
Sbjct: 319 FKTNKSH 325
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++ D RSKGYG++T S E A++AL +N L
Sbjct: 22 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 81
Query: 63 RVIFVDYVRPNRHYNTD 79
R + V +V TD
Sbjct: 82 RPMRVGHVTERLDGGTD 98
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG + + ++ D RS+G+G++T + E A A+ N L
Sbjct: 13 LNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRATNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIHVDH 81
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 119 (46.9 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ TKEML + FS+ G+V A + G ++S G+G++T S+EE+ + A+V +N LL+ +
Sbjct: 187 TVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQ 246
Query: 64 VIFVD 68
I V+
Sbjct: 247 KIRVN 251
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 124 (48.7 bits), Expect = 5.1e-07, P = 5.1e-07
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ MLA+ F G VT A +I D RSKG+GY+ +T EEA+KA + +
Sbjct: 246 LSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFI 305
Query: 61 DVRVIFVDYVRPNRHYNTDASLVR 84
D R I VD+ + DA+ R
Sbjct: 306 DGREIKVDFSTGKATNSNDAAGAR 329
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 118 (46.6 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVD 54
+++ T K L + F QFG + +A +I D RSKGYG++T E AQKA VD
Sbjct: 14 LAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 124 (48.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 344 FNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAG 403
Query: 63 RVIFVDYVRPNRHYNT 78
R++ V V NT
Sbjct: 404 RLMKVGNVTERLDMNT 419
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 121 (47.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 102 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 161
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 162 RPMKVGHVTER----TDAS 176
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 120 (47.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L FS G++ A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 32 TQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 92 KVSYARPSSEVIKDANL 108
Score = 105 (42.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQVS 318
Query: 69 YVRPNRH 75
+ H
Sbjct: 319 FKTNKSH 325
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 125 (49.1 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T E LA+ FSQ + A +++D +SKGYG++T + E+A+ AL ++N + +
Sbjct: 47 SATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEELNGSTFEGK 106
Query: 64 VIFVDYVRPNRHYNTDASL 82
I V+Y +P RH D ++
Sbjct: 107 KIKVEYAQP-RHRVVDETV 124
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 124 (48.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + +
Sbjct: 167 KVFVGHFKSRK 177
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L F+ +G +T A ++ D G S+G+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDEKLRKEFAPYGTITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
Score = 95 (38.5 bits), Expect = 0.00093, P = 0.00093
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F++FG+ ++ D + RS+G+G++ +A++A+ +MN L+ RV++V
Sbjct: 205 EKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + L R+ Q +E
Sbjct: 264 G--RAQKRLERQGELKRKFEQIKQE 286
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 115 (45.5 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++ D RSKGYG++T S E A++AL +N L
Sbjct: 47 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 106
Query: 63 RVIFVDYVRPNRHYNTD 79
R + V +V TD
Sbjct: 107 RPMRVGHVTERLDGGTD 123
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 121 (47.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 123 (48.4 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 64 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 121
Query: 64 VIFV 67
+FV
Sbjct: 122 KVFV 125
Score = 116 (45.9 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 263 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 320
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 321 ALAQ--RKEERQAHLTNQYMQ 339
Score = 97 (39.2 bits), Expect = 0.00053, P = 0.00053
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 160 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 218
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 123 (48.4 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 97 (39.2 bits), Expect = 0.00054, P = 0.00054
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 122 (48.0 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 255 FNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAG 314
Query: 63 RVIFVDYVRPNRHYNTDASLV 83
R + V +V +T +S +
Sbjct: 315 RPMKVGHVTERTDASTASSFL 335
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 97 (39.2 bits), Expect = 0.00059, P = 0.00059
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 123 (48.4 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 116 (45.9 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 97 (39.2 bits), Expect = 0.00060, P = 0.00060
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S +TT +ML +AFS +G V A ++ D +RS+G+G++T S+ EA+ A+ M+ L
Sbjct: 10 LSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKEL 69
Query: 61 DVRVIFV 67
+ R + V
Sbjct: 70 NGRRVSV 76
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F T E LA+AFSQ+G V A + D + SKG+G++ T E AQKA + N
Sbjct: 82 FDATNEHLAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACEEANNTFWHG 140
Query: 63 RVIFV-DYVRPNRHYNTDASLVRQPAQSP 90
R I V ++ ++ N DA + Q ++P
Sbjct: 141 RRINVAPRIKASKPGNRDA--MNQEERTP 167
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 116 (45.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 90 (36.7 bits), Expect = 0.00085, P = 0.00085
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 252
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 116 (45.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 141 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 198
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 199 ALAQ--RKEERQAHLTNQYMQ 217
Score = 97 (39.2 bits), Expect = 0.00015, P = 0.00015
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 38 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 96
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ L FS G+V A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 92 KVSYARPSSEVIKDANL 108
Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 69 YVRPNRH 75
+ H
Sbjct: 319 FKTNKSH 325
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ L FS G+V A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 92 KVSYARPSSEVIKDANL 108
Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 69 YVRPNRH 75
+ H
Sbjct: 319 FKTNKSH 325
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ L FS G+V A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 92 KVSYARPSSEVIKDANL 108
Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318
Query: 69 YVRPNRH 75
+ H
Sbjct: 319 FKTNKSH 325
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT++ L + S++G++ ++ I S+GYG++ TE+E +A D + L+
Sbjct: 71 LSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDAHHSLI 130
Query: 61 DVRVIFVDYVR 71
D R I VDY R
Sbjct: 131 DGREIIVDYNR 141
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ L FS G+V A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 40 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 99
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 100 KVSYARPSSEVIKDANL 116
Score = 104 (41.7 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 267 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 326
Query: 69 YVRPNRH 75
+ H
Sbjct: 327 FKTNKSH 333
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 121 (47.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 318
Query: 63 RVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 319 RPMKVGHVTER----TDAS 333
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 114 (45.2 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F+ FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 366 ALAQ--RKEERQAHLTNQYMQ 384
Score = 97 (39.2 bits), Expect = 0.00058, P = 0.00058
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F Q+G ++ D +S+G+G+++ E+AQKA+ DMN L+ + IFV
Sbjct: 205 ERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 14 FSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73
FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V +
Sbjct: 5 FSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ-- 60
Query: 74 RHYNTDASLVRQPAQ 88
R A L Q Q
Sbjct: 61 RKEERQAHLTNQYMQ 75
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 20/65 (30%), Positives = 42/65 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKVR 72
Query: 61 DVRVI 65
+RV+
Sbjct: 73 -IRVL 76
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
++T + L +AFS++G V + II D RS+G+G++T +++E ++A+ MN LD
Sbjct: 15 WATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDG 74
Query: 63 RVIFVDYVRPNR 74
R I V+ + R
Sbjct: 75 RNITVNEAQSRR 86
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L F+ +G V A ++MD RS+G+G++ +++EAQ A+ +N +D R + V+
Sbjct: 19 LERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGLNGKEMDGRNLMVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S ST E+L +AF FG++ A +++D S+G+G++T + E A A+ M L
Sbjct: 43 LSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKEL 102
Query: 61 DVRVIFV 67
D R+I V
Sbjct: 103 DGRIIGV 109
>ASPGD|ASPL0000039681 [details] [associations]
symbol:AN3072 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 EMBL:AACD01000051 RefSeq:XP_660676.1
ProteinModelPortal:Q5B8Q8 EnsemblFungi:CADANIAT00010006
GeneID:2874063 KEGG:ani:AN3072.2 eggNOG:NOG262408 OMA:RATERHS
OrthoDB:EOG4H1F3V Uniprot:Q5B8Q8
Length = 856
Score = 111 (44.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
V F+ TK M+ D FS G V + +D + G+GY+T +T E A +A+ ++ ++
Sbjct: 485 VGFNVTKAMIRDVFSSKGLVVGVNLPVDSRSGKHAGFGYLTFATNEGATRAMKELQGTVI 544
Query: 61 DVRVIFVDYV 70
D I ++YV
Sbjct: 545 DGHRINLEYV 554
Score = 36 (17.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 71 RPNRHYNTD--ASLVRQP 86
RPN HY A+ +R+P
Sbjct: 706 RPNPHYYHPRRAATIREP 723
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 118 (46.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ L FS G+V A +I D S GYG++ T ++A++A+ +N + L + I
Sbjct: 59 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 118
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 119 KVSYARPSSEVIKDANL 135
Score = 104 (41.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 286 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 345
Query: 69 YVRPNRH 75
+ H
Sbjct: 346 FKTNKSH 352
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 177 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 234
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 235 ALAQ--RKEERQAHLTNQYMQ 253
Score = 91 (37.1 bits), Expect = 0.00081, P = 0.00080
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 31 KNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+N SKGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 6 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 42
>UNIPROTKB|F1NDD0 [details] [associations]
symbol:F1NDD0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AADN02019816 EMBL:AADN02019817 IPI:IPI00575003
ProteinModelPortal:F1NDD0 Ensembl:ENSGALT00000013174 Uniprot:F1NDD0
Length = 307
Score = 101 (40.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L F+Q+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 46 IDFKTNENDLRKFFAQYGCVREVKIVNDRA-GISKGYGFITFETQEDAQKILQEAKKL 102
Score = 34 (17.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 72 PNRHYNTDASLVRQPAQSP 90
P+R ++ +V QP P
Sbjct: 166 PSRSVSSSPMMVTQPVYQP 184
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 18/56 (32%), Positives = 37/56 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 68
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 115 (45.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++ D RSKGYG++T S E A++AL +N L
Sbjct: 102 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 161
Query: 63 RVIFVDYVRPNRHYNTD 79
R + V +V TD
Sbjct: 162 RPMRVGHVTERLDGGTD 178
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 121 (47.7 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ T L +AF+Q GQV + D+ RS GYGY+ +T ++A +AL ++N M L+ R
Sbjct: 55 TVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGR 114
Query: 64 VIFVDY 69
I V Y
Sbjct: 115 AIRVMY 120
Score = 101 (40.6 bits), Expect = 0.00023, P = 0.00023
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L + FS FG + + +D +SKGYG++ T+E AQ A+ +N MLL+ +
Sbjct: 143 SIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDK 201
Query: 64 VIFV 67
++V
Sbjct: 202 QVYV 205
Score = 98 (39.6 bits), Expect = 0.00049, P = 0.00049
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T + L + F+ FG +T ++ D S+G G++ ST EEA +A+ +MN ++ +
Sbjct: 337 SVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTK 395
Query: 64 VIFV 67
++V
Sbjct: 396 PLYV 399
Score = 98 (39.6 bits), Expect = 0.00049, P = 0.00049
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S S + E L F +FG VT + +IM G+ +SKG+G++ ++A +A+ +N
Sbjct: 231 LSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSPKE 92
D + FV + T+ L ++ QS KE
Sbjct: 290 DDKEWFVGKAQKKSERETE--LKQKFEQSLKE 319
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 97 (39.2 bits), Expect = 0.00058, P = 0.00058
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 120 (47.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L + FS+FG+ ++MD RSKG+G++ EEAQKA+ DMN ++ R+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG- 264
Query: 70 VRPNRHYNTDASLVRQPAQSPKE 92
R + + L R+ Q +E
Sbjct: 265 -RAQKRLERQSELKRKFEQMKQE 286
Score = 115 (45.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N S+G+G++ T+E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGHGFVHFETQEAATRAIQTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + +
Sbjct: 167 KVFVGHFKSRK 177
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F++ K+ L D S F +++ I+ D RS+G+G++T + E A + MN L
Sbjct: 13 LNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRAMNGESL 72
Query: 61 DVRVIFVDY 69
D R I VD+
Sbjct: 73 DGRQIHVDH 81
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 116 (45.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>ZFIN|ZDB-GENE-050706-77 [details] [associations]
symbol:snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
Length = 208
Score = 111 (44.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT+E L D FS+FG + + ++ D+ SK Y ++ E ++A D NK++LD
Sbjct: 61 TTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYE 120
Query: 65 IFVD 68
+ VD
Sbjct: 121 LLVD 124
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 113 (44.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 35 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 92
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 119 (46.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+GYG++ T+E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 108 (43.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L + FS FG ++MD RS+G+G++ EEAQKA+ +MN ++ R+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 70 VRPNRHYNTDASLVRQPAQSPKE 92
R + L R+ Q +E
Sbjct: 265 -RAQKRIERQGELKRKFEQIKQE 286
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 DRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>UNIPROTKB|F1PPC3 [details] [associations]
symbol:F1PPC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000077064 EMBL:AAEX03002929
ProteinModelPortal:F1PPC3 Ensembl:ENSCAFT00000037406 Uniprot:F1PPC3
Length = 335
Score = 115 (45.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T + +L F FG VT +I D N+ KG+G++T + EEA A+ +N L ++
Sbjct: 263 THEGILWQMFGPFGAVTNVKVIRDFSTNKHKGFGFVTMTNHEEAAMAVASLNSSRLGDKI 322
Query: 65 IFVDY 69
+F+ +
Sbjct: 323 LFISF 327
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 53 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 110
Query: 64 VI 65
+
Sbjct: 111 KV 112
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 118 (46.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 11 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 68
Query: 64 VIFV 67
+FV
Sbjct: 69 KVFV 72
Score = 113 (44.8 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 210 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 267
Score = 110 (43.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + ++IFV
Sbjct: 107 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 165
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 166 G--RAQKKVERQAELKRKFEQLKQE 188
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S + L +AF FG V+ A +I D +SKGYG+++ EEA++A+ MN L
Sbjct: 142 LSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWL 201
Query: 61 DVRVIFVDYV--RPN-----RHYN 77
R I ++ +P HYN
Sbjct: 202 GRRTIRTNWATRKPGDQEKPSHYN 225
Score = 94 (38.1 bits), Expect = 0.00068, P = 0.00068
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ T++ +A F+Q G VTK +I D G N Y ++ S +A +AL MNK LL R
Sbjct: 56 TVTEDFIATLFNQIGSVTKTKVIFD-GSNDP--YAFVEFSDHGQASQALQTMNKRLLLDR 112
Query: 64 VIFVDY-VRPNR 74
+ V++ V P +
Sbjct: 113 EMKVNWAVEPGQ 124
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 118 (46.6 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 38 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR 95
Query: 64 VIFV 67
+FV
Sbjct: 96 KVFV 99
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 237 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 294
Score = 105 (42.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + + IFV
Sbjct: 134 ENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 192
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 193 G--RAQKKVERQAELKRKFEQLKQE 215
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + ++IFV
Sbjct: 205 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 118 (46.6 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + + +D +SKGYG++ + EE AQKA+ +N MLL+ +
Sbjct: 134 SIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192
Query: 64 VIFV 67
++V
Sbjct: 193 QVYV 196
Score = 106 (42.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/76 (27%), Positives = 43/76 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
STT + L +AF ++G++T A ++ D G+ +SKG+G++ ++A +A+ +N D +
Sbjct: 225 STTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283
Query: 64 VIFVDYVRPNRHYNTD 79
+V + T+
Sbjct: 284 EWYVGRAQKKSERETE 299
Score = 105 (42.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T L DAF Q G V + D+ RS GYGY+ + ++A +A+ ++N + L
Sbjct: 43 LDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPL 102
Query: 61 DVRVIFVDY 69
+ I V Y
Sbjct: 103 YGKPIRVMY 111
Score = 97 (39.2 bits), Expect = 0.00058, P = 0.00058
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + E L + FS FG VT + ++ D SKG G++ +T EEA +A+ ++ +++ +
Sbjct: 328 SISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESK 386
Query: 64 VIFVDYV--RPNRHYNTDA--SLVRQPAQSP 90
++V + +R A S VR A P
Sbjct: 387 PLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 417
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + +VIFV
Sbjct: 205 ESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + +VIFV
Sbjct: 205 ENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 118 (46.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 105 (42.0 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + + IFV
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + ++IFV
Sbjct: 205 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 109 (43.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + +VIFV
Sbjct: 205 ENLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 105 (42.0 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ + L F QFG V + IIMD N+SKGYG++T E+ +K N + +
Sbjct: 110 ISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFITFENEDSIEKVRTS-NLLFM 168
Query: 61 DVRVIFVDYVR 71
+ D VR
Sbjct: 169 GKNMNIGDPVR 179
Score = 36 (17.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 75 HYNTDASLVRQPAQSPKE 92
H++ ++ P QSP +
Sbjct: 224 HHHPHGQIIYDPQQSPSQ 241
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 118 (46.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 113 (44.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 105 (42.0 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + + IFV
Sbjct: 205 ENLRELFSQFGKTLSVKVMRDCS-GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRKFEQLKQE 286
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 140 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 197
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 198 ALAQ--RKEERQAHLTNQYMQ 216
Score = 93 (37.8 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 37 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 95
Score = 35 (17.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 72 PNRHYNTDASL-VRQPA 87
P +H NT + ++QPA
Sbjct: 353 PQQHLNTQPQVAMQQPA 369
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+++ T KE + F QFG++ +A +I D RSKGYG++T E A+ A VD ++
Sbjct: 20 LAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVI 78
>MGI|MGI:1923417 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35
(U11/U12)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 HSSP:Q14103
GeneTree:ENSGT00530000063750 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
ChiTaRS:SNRNP35 EMBL:AK018232 EMBL:AK039064 EMBL:BC043031
EMBL:BC058361 IPI:IPI00135531 RefSeq:NP_083808.1 UniGene:Mm.156035
ProteinModelPortal:Q9D384 SMR:Q9D384 STRING:Q9D384
PhosphoSite:Q9D384 PRIDE:Q9D384 Ensembl:ENSMUST00000031349
Ensembl:ENSMUST00000111453 GeneID:76167 KEGG:mmu:76167
UCSC:uc008zpy.1 InParanoid:Q9D384 NextBio:344705 Bgee:Q9D384
Genevestigator:Q9D384 Uniprot:Q9D384
Length = 244
Score = 111 (44.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ T +E L + FS++G + + ++ D+ SKGY ++ E KA D + +++
Sbjct: 58 LNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVI 117
Query: 61 DVRVIFVDY 69
D IFVDY
Sbjct: 118 DQHEIFVDY 126
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 149 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 206
Query: 64 VIFV 67
+FV
Sbjct: 207 KVFV 210
Score = 113 (44.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 348 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 405
Score = 111 (44.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + +VIFV
Sbjct: 245 ESLKELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFV 303
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 304 G--RAQKKVERQAELKRKFEQLKQE 326
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 115 (45.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++ D RSKGYG++T S E A++AL +N L
Sbjct: 263 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 322
Query: 63 RVIFVDYVRPNRHYNTD 79
R + + +V +TD
Sbjct: 323 RPMRIGHVTERLDGSTD 339
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 115 (45.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++ D RSKGYG++T S E A++AL +N L
Sbjct: 272 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 331
Query: 63 RVIFVDYVRPNRHYNTD 79
R + V +V TD
Sbjct: 332 RPMRVGHVTERLDGGTD 348
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 115 (45.5 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ ++ D RSKGYG++T S E A++AL +N L
Sbjct: 273 FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 332
Query: 63 RVIFVDYVRPNRHYNTD 79
R + V +V TD
Sbjct: 333 RPMRVGHVTERLDGGTD 349
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+GYG++ T E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L + FS FG ++MD RS+G+G++ EEAQKA+ +MN ++ R+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG- 264
Query: 70 VRPNRHYNTDASLVRQPAQSPKE 92
R + + L R+ Q +E
Sbjct: 265 -RAQKRIERQSELKRKFEQIKQE 286
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 117 (46.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D + S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAITTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 107 (42.7 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L D FS+FG++ ++ D S+G+G++ EEAQKA++DMN + R+++V
Sbjct: 207 LQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVG- 264
Query: 70 VRPNRHYNTDASLVRQ 85
R + + L R+
Sbjct: 265 -RAQKRVERQSELKRR 279
Score = 105 (42.0 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN +L +
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRILGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 107 (42.7 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
>UNIPROTKB|Q1LZH0 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 GO:GO:0005689 GeneTree:ENSGT00530000063750
EMBL:BC116002 IPI:IPI00730647 RefSeq:NP_001069024.1 UniGene:Bt.5294
ProteinModelPortal:Q1LZH0 STRING:Q1LZH0 PRIDE:Q1LZH0
Ensembl:ENSBTAT00000010602 GeneID:512142 KEGG:bta:512142 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 InParanoid:Q1LZH0 KO:K13155
OMA:QHEVFVD OrthoDB:EOG4MSD0C NextBio:20870261 Uniprot:Q1LZH0
Length = 245
Score = 110 (43.8 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ T +E L + FS++G + + ++ D+ SKGY ++ E KA D + +++
Sbjct: 58 LNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKDERSLLKAYRDADGLVI 117
Query: 61 DVRVIFVDY 69
D IFVDY
Sbjct: 118 DQHEIFVDY 126
>UNIPROTKB|F1P6U2 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005689 GeneTree:ENSGT00530000063750 CTD:11066 KO:K13155
OMA:QHEVFVD EMBL:AAEX03014640 RefSeq:XP_534648.2
ProteinModelPortal:F1P6U2 Ensembl:ENSCAFT00000011983 GeneID:477450
KEGG:cfa:477450 Uniprot:F1P6U2
Length = 246
Score = 110 (43.8 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ T +E L + FS++G + + ++ D+ SKGY ++ E KA D + +++
Sbjct: 58 LNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGLSKGYAFIEYKEERSLIKAYRDADGLVI 117
Query: 61 DVRVIFVDY 69
D IFVDY
Sbjct: 118 DQHEIFVDY 126
>UNIPROTKB|I3LN96 [details] [associations]
symbol:SNRNP35 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00530000063750 KO:K13155 OMA:QHEVFVD EMBL:CU468910
RefSeq:XP_003359137.1 Ensembl:ENSSSCT00000023937 GeneID:100626152
KEGG:ssc:100626152 Uniprot:I3LN96
Length = 246
Score = 110 (43.8 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ T +E L + FS++G + + ++ D+ SKGY ++ E KA D + +++
Sbjct: 58 LNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERSLLKAYRDADGLVI 117
Query: 61 DVRVIFVDY 69
D IFVDY
Sbjct: 118 DQHEIFVDY 126
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 116 (45.9 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 276 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Query: 68 DYVRPNRHYNTDASLVRQPAQ 88
+ R A L Q Q
Sbjct: 334 ALAQ--RKEERQAHLTNQYMQ 352
Score = 97 (39.2 bits), Expect = 0.00055, P = 0.00055
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 173 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 231
Score = 95 (38.5 bits), Expect = 0.00090, P = 0.00090
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 22 KATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
K+ ++ D +N SKGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 95 KSGVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 111 (44.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 82 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 140
Query: 61 DVRVI 65
D RVI
Sbjct: 141 DGRVI 145
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 111 (44.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 82 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 140
Query: 61 DVRVI 65
D RVI
Sbjct: 141 DGRVI 145
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 114 (45.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
L +AF +FG+V++A II D N+ KGYG+++ E+A++A+ +MN L R I
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 107 (42.7 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + ++IFV
Sbjct: 118 ESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 176
Query: 68 DYVRPNRHYNTDASLVRQ 85
R + A L R+
Sbjct: 177 G--RAQKKVERQAELKRK 192
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 116 (45.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D + S+GYG++ T+E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGDILSCKVVCD--EYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L + FS FG ++MD RS+G+G++ EEAQKA+ +MN ++ R+++V
Sbjct: 207 LKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG- 264
Query: 70 VRPNRHYNTDASLVRQPAQSPKE 92
R + L R+ Q +E
Sbjct: 265 -RAQKRIERQGELKRKFEQIKQE 286
Score = 96 (38.9 bits), Expect = 0.00074, P = 0.00074
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L FS +G +T ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 DRLRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 112 (44.5 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + + D ++ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 94 (38.1 bits), Expect = 0.00049, P = 0.00049
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
L D FSQFG++ ++ D S+ +G++ EEAQKA+V MN + R+++
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 111 (44.1 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 95 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 153
Query: 61 DVRVI 65
D RVI
Sbjct: 154 DGRVI 158
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 116 (45.9 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L + FS FG + + MD+ RSKGYG++ EE AQ A+ +N ML++ +
Sbjct: 146 SIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Query: 64 VIFVDY 69
+FV +
Sbjct: 205 QVFVGH 210
Score = 100 (40.3 bits), Expect = 0.00029, P = 0.00029
Identities = 19/64 (29%), Positives = 40/64 (62%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L + FS++G VT + ++++ + S+G+G++ S EEA +AL +MN ++ +
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRK 400
Query: 64 VIFV 67
+++
Sbjct: 401 PLYI 404
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 113 (44.8 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 63 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 120
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 105 (42.0 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L + FS++G +T ++ D RS+G+ ++ +++++A+ N M L
Sbjct: 25 LSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMEL 84
Query: 61 DVRVIFVDY-VRPNRHYNTDASLVRQP 86
D R I VDY + H T + +P
Sbjct: 85 DGRRIRVDYSITKRAHTPTPGIYMGRP 111
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 110 (43.8 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST + L +AFS++G+V A II+D RS+G+ ++T ++ EEA A+ ++ L
Sbjct: 41 ISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDL 99
Query: 61 DVRVIFVDY 69
R I V+Y
Sbjct: 100 HGRRIRVNY 108
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 111 (44.1 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 81 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 139
Query: 61 DVRVI 65
D RVI
Sbjct: 140 DGRVI 144
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 111 (44.1 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 82 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVL-DQKEHRL 140
Query: 61 DVRVI 65
D RVI
Sbjct: 141 DGRVI 145
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 111 (44.1 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+++ T ++ + F QFG++ +A +I D RSKGYG++T E A +A +MN ++
Sbjct: 29 LAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVI 87
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 109 (43.4 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 7 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 65
Query: 61 DVRVI 65
D RVI
Sbjct: 66 DGRVI 70
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 114 (45.2 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D G N SKG+G++ T+E A KA+ +N M+++ + +FV
Sbjct: 114 LYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFV 170
Score = 111 (44.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L + FSQFG +T A ++ D SKG+G++ + +EA +A+ +MN ++ +
Sbjct: 294 SIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTK 353
Query: 64 VIFV 67
++V
Sbjct: 354 PLYV 357
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 110 (43.8 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S ++ L +AF+++G+V +I+D RS+G+G++T ++ E A A+ ++ L
Sbjct: 47 MAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDL 106
Query: 61 DVRVIFVDY 69
RV+ V+Y
Sbjct: 107 HGRVVKVNY 115
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 109 (43.4 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 26/90 (28%), Positives = 47/90 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L + FS++G +T ++ D RS+G+ ++ +++++A+ N M L
Sbjct: 128 LSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHANGMEL 187
Query: 61 DVRVIFVDY-VRPNRHYNTDASLVRQPAQS 89
D R I VDY + H T + +P S
Sbjct: 188 DGRRIRVDYSITKRAHTPTPGIYMGRPTHS 217
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 106 (42.4 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 17 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 75
Query: 61 DVRVI 65
D RV+
Sbjct: 76 DGRVV 80
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 109 (43.4 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 77 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 135
Query: 61 DVRVI 65
D RVI
Sbjct: 136 DGRVI 140
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 104 (41.7 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L + FS++G ++ ++ D RS+G+ ++ +++++A+ N M L
Sbjct: 25 LSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMEL 84
Query: 61 DVRVIFVDY-VRPNRHYNTDASLVRQPAQS 89
D R I VDY + H T + +P S
Sbjct: 85 DGRRIRVDYSITKRAHTPTPGIYMGRPTHS 114
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 106 (42.4 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 14 LSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 72
Query: 61 DVRVI 65
D RV+
Sbjct: 73 DGRVV 77
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 109 (43.4 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 77 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 135
Query: 61 DVRVI 65
D RVI
Sbjct: 136 DGRVI 140
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 104 (41.7 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L + FS++G ++ ++ D RS+G+ ++ +++++A+ N M L
Sbjct: 25 LSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMEL 84
Query: 61 DVRVIFVDY-VRPNRHYNTDASLVRQPAQS 89
D R I VDY + H T + +P S
Sbjct: 85 DGRRIRVDYSITKRAHTPTPGIYMGRPTHS 114
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 109 (43.4 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 77 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVL-DQKEHRL 135
Query: 61 DVRVI 65
D RVI
Sbjct: 136 DGRVI 140
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 106 (42.4 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+VT TI MD RS+G+G++ +K L + + L
Sbjct: 7 LSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVL-EQKEHRL 65
Query: 61 DVRVI 65
D R+I
Sbjct: 66 DGRLI 70
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 108 (43.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T E LA AF + G V A ++ D RS+GYG++ S++ E + AL ++ L
Sbjct: 184 LSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFEL 243
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 244 EGRAIRVN 251
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN-KML 59
+S+S ++ L DAFS FG+V + I D G RS+G+G++ + E +A A M+ K L
Sbjct: 48 LSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGL 107
Query: 60 LD--VRVIF-VDYVR 71
L +R+ F ++ VR
Sbjct: 108 LGRPLRISFALERVR 122
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML--- 59
++T KE L + F +FG++ ++ D +RS+GYG++T E A +A D N +
Sbjct: 22 WTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGR 81
Query: 60 -LDVRVIFVDY-VRPNRHY--NTDASLVR-QPAQSPK 91
+ ++ FV V+PN+ N L R P +P+
Sbjct: 82 ITNCKLAFVGAKVKPNQSQPSNLPQLLPRYDPQYNPR 118
>TAIR|locus:2168133 [details] [associations]
symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
KEGG:ath:AT5G59860 Uniprot:F4JXD2
Length = 157
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT + L F+ F A +I D R KG+G++T +E++AQKAL +N ++
Sbjct: 78 LSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 61 DVRVIFVD 68
+ R+IFV+
Sbjct: 133 NGRLIFVE 140
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 114 (45.2 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A I+ D + +SKG+G++ +T EEA KA+ +MN+ +L + ++V
Sbjct: 378 ERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
>RGD|1310724 [details] [associations]
symbol:Snrnp35 "small nuclear ribonucleoprotein 35 (U11/U12)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310724
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724 GO:GO:0005689 CTD:11066
HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OrthoDB:EOG4MSD0C
EMBL:BC086435 IPI:IPI00189830 RefSeq:NP_001014149.1
UniGene:Rn.79076 ProteinModelPortal:Q5U1W5 STRING:Q5U1W5
GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724 InParanoid:Q5U1W5
NextBio:674154 Genevestigator:Q5U1W5 Uniprot:Q5U1W5
Length = 244
Score = 107 (42.7 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T +E L + FS++G + + ++ D+ SKGY ++ E KA D + +++D
Sbjct: 62 TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHE 121
Query: 65 IFVDY 69
IFVDY
Sbjct: 122 IFVDY 126
>UNIPROTKB|Q5U1W5 [details] [associations]
symbol:Snrnp35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310724 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9V535 eggNOG:COG0724
GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374 HOVERGEN:HBG104583
KO:K13155 OrthoDB:EOG4MSD0C EMBL:BC086435 IPI:IPI00189830
RefSeq:NP_001014149.1 UniGene:Rn.79076 ProteinModelPortal:Q5U1W5
STRING:Q5U1W5 GeneID:360803 KEGG:rno:360803 UCSC:RGD:1310724
InParanoid:Q5U1W5 NextBio:674154 Genevestigator:Q5U1W5
Uniprot:Q5U1W5
Length = 244
Score = 107 (42.7 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T +E L + FS++G + + ++ D+ SKGY ++ E KA D + +++D
Sbjct: 62 TKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALLKAYRDADGLVIDQHE 121
Query: 65 IFVDY 69
IFVDY
Sbjct: 122 IFVDY 126
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++MD RS+G+G++T +T EE A+ + +
Sbjct: 30 LSFETTDESLRSHFEQWGMLTDC-VVMDPNTKRSRGFGFVTYTTVEEVDAAM-NARPQKM 87
Query: 61 DVRVI 65
D RV+
Sbjct: 88 DGRVV 92
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D + S+G+G++ T E AQ A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 108 (43.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FSQFG++ ++ D S+G+G++ E+AQKA+ DMN + R+++V
Sbjct: 207 LQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYV 263
Score = 101 (40.6 bits), Expect = 0.00021, P = 0.00021
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L F+ +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDEKLRKEFAPYGMITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
>DICTYBASE|DDB_G0270156 [details] [associations]
symbol:DDB_G0270156 "RNA-binding protein 28"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0270156
EMBL:AAFI02000005 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT RefSeq:XP_646584.1
ProteinModelPortal:Q55C97 EnsemblProtists:DDB0190846 GeneID:8617554
KEGG:ddi:DDB_G0270156 InParanoid:Q55C97 ProtClustDB:CLSZ2846931
Uniprot:Q55C97
Length = 900
Score = 115 (45.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF+T + L + FS +GQ+ + G N +G+ ++T E ++K L + N +
Sbjct: 218 LSFNTNIQFLVEKFSSYGQLILVKVPTKPGTNTPRGFAFLTFKERESSEKVLKECNNEKI 277
Query: 61 DVRVIFVDY-VRPNRHYNTDASLVRQPAQSPKEN 93
R I +D+ ++ N + +Q Q KEN
Sbjct: 278 HTRQIVIDWSLKQNDYQQLQFDKQQQQKQDSKEN 311
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 77 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 135
Query: 61 DVRVI 65
D RVI
Sbjct: 136 DGRVI 140
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T++ A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 99 (39.9 bits), Expect = 0.00035, P = 0.00035
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G+ ++ D +SKG+G+++ E+A KA+ +MN ++ +++FV
Sbjct: 205 ERLKELFSKYGKTLSVKVMTD-PTGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFV 263
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKE 92
R + A L R+ Q +E
Sbjct: 264 G--RAQKKVERQAELKRRFEQLKQE 286
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 106 (42.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 40 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 98
Query: 61 DVRVI 65
D RV+
Sbjct: 99 DGRVV 103
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 309 EKLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 366
Score = 112 (44.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/64 (37%), Positives = 37/64 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGY ++ T++ A +A+ MN MLL+ R
Sbjct: 110 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQDAADRAIEKMNGMLLNDR 167
Query: 64 VIFV 67
+FV
Sbjct: 168 KVFV 171
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TTK+ L D FS+FG+V T+ +D RS+G+G++ E K + D + L
Sbjct: 85 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKL 143
Query: 61 DVRVI 65
+ +VI
Sbjct: 144 NGKVI 148
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TTK+ L D FS+FG+V T+ +D RS+G+G++ E K + D + L
Sbjct: 6 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQKEHKL 64
Query: 61 DVRVI 65
+ +VI
Sbjct: 65 NGKVI 69
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+V TI MD RS+G+G++ +K L D + L
Sbjct: 76 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRL 134
Query: 61 DVRVI 65
D RVI
Sbjct: 135 DGRVI 139
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L +
Sbjct: 77 SMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTK 136
Query: 64 VIFVDYVRPNRHYNTDASL 82
I V Y RP+ DA+L
Sbjct: 137 TIKVSYARPSSASIRDANL 155
Score = 106 (42.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 318 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 377
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 378 VSFKTNKTH 386
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 111 (44.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L
Sbjct: 189 LSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWL 248
Query: 61 DVRVI 65
R I
Sbjct: 249 GSRAI 253
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 107 (42.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L FSQ+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 52 IDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQEAEKL 108
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 102 (41.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L AF+Q+G V + II D RS+G+G++T E+ + A+ MN L
Sbjct: 15 LAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRSITVN 82
>UNIPROTKB|Q16560 [details] [associations]
symbol:SNRNP35 "U11/U12 small nuclear ribonucleoprotein 35
kDa protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0003723 HSSP:Q9V535
eggNOG:COG0724 GO:GO:0005689 CTD:11066 HOGENOM:HOG000006374
HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD OrthoDB:EOG4MSD0C
EMBL:U44798 EMBL:U44799 EMBL:AK290127 EMBL:BC009622 EMBL:BC047678
EMBL:BC054034 EMBL:BC093671 EMBL:BC111955 EMBL:BK005197
IPI:IPI00007576 IPI:IPI00377030 PIR:G02371 RefSeq:NP_073208.1
RefSeq:NP_851030.1 UniGene:Hs.632738 ProteinModelPortal:Q16560
SMR:Q16560 STRING:Q16560 PhosphoSite:Q16560 DMDM:74754517
PRIDE:Q16560 DNASU:11066 Ensembl:ENST00000350887
Ensembl:ENST00000412157 Ensembl:ENST00000526639 GeneID:11066
KEGG:hsa:11066 UCSC:uc001ufb.1 UCSC:uc021rfv.1
GeneCards:GC12P123891 HGNC:HGNC:30852 neXtProt:NX_Q16560
PharmGKB:PA164726115 InParanoid:Q16560 ChiTaRS:SNRNP35
GenomeRNAi:11066 NextBio:42065 Bgee:Q16560 CleanEx:HS_SNRNP35
Genevestigator:Q16560 Uniprot:Q16560
Length = 246
Score = 106 (42.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ T ++ L + FS++G + + ++ D+ SKGY ++ E KA D + +++
Sbjct: 58 LNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVI 117
Query: 61 DVRVIFVDY 69
D IFVDY
Sbjct: 118 DQHEIFVDY 126
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + + ++ + ++ S+G+G++ T E AQKA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGSILSSKVVYN--EHGSRGFGFVHFETHEAAQKAINTMNGMLLNDR 166
Query: 64 VIFVDYVR 71
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 20/64 (31%), Positives = 39/64 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L + FS +G +T A ++ + + SKG+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
Score = 97 (39.2 bits), Expect = 0.00055, P = 0.00055
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L D FSQFG+ ++ D +S+G+G++ EEAQKA+ MN + ++++V
Sbjct: 207 LQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVG- 264
Query: 70 VRPNRHYNTDASLVRQPAQSPKE 92
R + L R+ Q +E
Sbjct: 265 -RAQKRAERQNELKRRFEQMKQE 286
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 107 (42.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L FSQ+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 40 IDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFITFETQEDAQKILQEAEKL 96
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + + D ++ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 99 (39.9 bits), Expect = 0.00034, P = 0.00034
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDDKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 107 (42.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L FSQ+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 40 IDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQEAEKL 96
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ L FS G+V A +I D S GYG++ ++A++A+ +N + L + I
Sbjct: 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTI 91
Query: 66 FVDYVRPNRHYNTDASL 82
V + RP+ DA+L
Sbjct: 92 KVSFARPSSETIKDANL 108
Score = 102 (41.0 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L + + V
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVS 318
Query: 69 YVRPNRH 75
+ H
Sbjct: 319 FKTSKSH 325
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T+E L F QFG+++ A I+ + RS+G+GY+ + +A KA M + +
Sbjct: 284 LSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMKEHEI 342
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQS 89
D R I +DY R N D ++ AQ+
Sbjct: 343 DGRKINLDYAT-GRPANKDQGGFKERAQN 370
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F FG +T A +++D +SKG+G++ +T EEA KA+ +MN +++ + ++V
Sbjct: 350 EKLEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYV 408
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T E + AF+ FG+++ A ++ D+ +SKGYG+++ + +A+ A+V M L R I
Sbjct: 70 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 129
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L DAF+ FG V A +I+D RS+G+G++ + E A A+ +M+ L
Sbjct: 42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 102 NGRHIRVN 109
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L FSQ+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 52 IDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFITFETQEDAQKILQEAEKL 108
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 6 TKEMLADAFSQFGQVTKATIIMD-IGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T+E L F G++ ++ D I + +S GYG++ ++A+KA+ +N + L +
Sbjct: 78 TQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 137
Query: 65 IFVDYVRPNRHYNTDASL 82
I V Y RP+ DA+L
Sbjct: 138 IKVSYARPSSASIRDANL 155
Score = 107 (42.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 319 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 378
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 379 VSFKTSKTH 387
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L FSQ+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 52 IDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQEAEKL 108
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L FSQ+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 52 IDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQEAEKL 108
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+K+ L D F++FG+VT TI MD RS+G+G++ +K L + + L
Sbjct: 7 LSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVL-EQKEHRL 65
Query: 61 DVRVI 65
D R+I
Sbjct: 66 DGRLI 70
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 112 (44.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 21/79 (26%), Positives = 43/79 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F T ++ L + FS G + A ++ + ++GYG++T S E+AQ+A ++ L
Sbjct: 12 LAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKL 71
Query: 61 DVRVIFVDYVRPNRHYNTD 79
R++ +D+ P + D
Sbjct: 72 HGRILRLDFATPRKRSEVD 90
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 110 (43.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L
Sbjct: 183 LSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWL 242
Query: 61 DVRVI 65
R I
Sbjct: 243 GSRAI 247
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 106 (42.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 112 (44.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG +T A +++D RSKG+G++ EEA A+ DMN ++ + ++V
Sbjct: 359 LRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYV 415
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 12 DAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71
D FS FG + + D + SKGYG++ TE AQ A+ +N MLL + ++V +
Sbjct: 163 DTFSLFGNILSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQ 221
Query: 72 P 72
P
Sbjct: 222 P 222
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 104 (41.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G +I D +SKG+G++ T E AQKA++D++ +D +V++V
Sbjct: 49 EKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYV 107
Score = 103 (41.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS FG +++A ++M++G+ KG+G + S+ EEA KA+ +MN ++ + + V
Sbjct: 152 EKLKEEFSSFGSISRAKVMMEVGQG--KGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 106 (42.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVD 54
+++ T E L F Q+G + +A +I D RSKGYG++T E A++A VD
Sbjct: 31 LAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 67 VDYVRPNRH 75
V + +H
Sbjct: 357 VSFKTSKQH 365
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ F G + ++ D +S GYG++ S +A KA+ +N + L + I
Sbjct: 51 TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 67 VDYVRPNRH 75
V + +H
Sbjct: 357 VSFKTSKQH 365
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ F G + ++ D +S GYG++ S +A KA+ +N + L + I
Sbjct: 51 TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 67 VDYVRPNRH 75
V + +H
Sbjct: 357 VSFKTSKQH 365
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ F G + ++ D +S GYG++ S +A KA+ +N + L + I
Sbjct: 51 TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 67 VDYVRPNRH 75
V + +H
Sbjct: 357 VSFKTSKQH 365
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ F G + ++ D +S GYG++ S +A KA+ +N + L + I
Sbjct: 51 TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 297 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Query: 67 VDYVRPNRH 75
V + +H
Sbjct: 357 VSFKTSKQH 365
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ F G + ++ D +S GYG++ S +A KA+ +N + L + I
Sbjct: 51 TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 298 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 357
Query: 67 VDYVRPNRH 75
V + +H
Sbjct: 358 VSFKTSKQH 366
Score = 101 (40.6 bits), Expect = 0.00010, P = 0.00010
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ F G + ++ D +S GYG++ S +A KA+ +N + L + I
Sbjct: 51 TQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 106 (42.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVD 54
+++ T E L F Q+G++ +A +I D RSKGYG++T E A++A D
Sbjct: 31 LAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
>POMBASE|SPAC23A1.09 [details] [associations]
symbol:SPAC23A1.09 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=NAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC23A1.09
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045292 HOGENOM:HOG000183826
KO:K12876 HSSP:Q9Y5S9 PIR:T38229 RefSeq:NP_594439.1
ProteinModelPortal:O42847 SMR:O42847 STRING:O42847
EnsemblFungi:SPAC23A1.09.1 GeneID:2541998 KEGG:spo:SPAC23A1.09
eggNOG:NOG246776 OMA:ITETTEG OrthoDB:EOG4M9523 NextBio:20803079
Uniprot:O42847
Length = 121
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV- 64
T+E + D F+ FG V + +D KGY + +T E+AQKA+ + N LLD ++
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKLE 81
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQSPK 91
+ ++ P + R +QSP+
Sbjct: 82 VDFAFLEPPERAPRPSISTRSRSQSPE 108
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 108 (43.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + TT E L AF +G++T+ +++MD R+KG+G++ T + A+ AL + K +
Sbjct: 170 LGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNPEKRMY 229
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQ-PAQSPK 91
+ V + P R +N+ +Q P +S K
Sbjct: 230 NRTVSCL----PARPFNSGKPREQQQPVESVK 257
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 107 (42.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58
+ F T + L FSQ+G V + I+ D SKGYG++T T+E+AQK L + K+
Sbjct: 40 IDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQKILQEAEKL 96
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 108 (43.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L + I
Sbjct: 80 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTI 139
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 140 KVSYARPSSASIRDANL 156
Score = 105 (42.0 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 318 ENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQ 377
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 378 VSFKTNKTH 386
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 105 (42.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F TT E L F Q+G +T+ ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 107 (42.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
+++ L FS G+V A +I D S GYG++ +A++A+ +N + L + I
Sbjct: 46 SQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTI 105
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 106 KVSYARPSSDSIKDANL 122
Score = 103 (41.3 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L F FG VT +I D N+ KG+G++T + EEA A+ +N L +++ V
Sbjct: 273 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKILQVS 332
Query: 69 YVRPNRH 75
+ H
Sbjct: 333 FKTSKSH 339
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 107 (42.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
Score = 106 (42.4 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 276 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 335
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 336 VSFKTNKTH 344
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 104 (41.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKAL 52
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+
Sbjct: 14 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 106 (42.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 106 (42.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 106 (42.4 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 349 VSFKTNKTH 357
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 349 VSFKTNKTH 357
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 289 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 349 VSFKTNKTH 357
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 289 ESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Query: 67 VDYVRPNRH 75
V + +H
Sbjct: 349 VSFKTSKQH 357
Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E F G++ ++ D +S GYG++ +A KA+ +N + L + I
Sbjct: 50 TQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTI 109
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 110 KVSYARPSSASIRDANL 126
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 107 (42.7 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L F G++ ++ D +S GYG++ ++A+KA+ +N + L + I
Sbjct: 51 TQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 110
Query: 66 FVDYVRPNRHYNTDASL 82
V Y RP+ DA+L
Sbjct: 111 KVSYARPSSASIRDANL 127
Score = 106 (42.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+ +L F FG VT +I D N+ KG+G++T + +EA A+ +N L RV+
Sbjct: 290 ESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 349
Query: 67 VDYVRPNRH 75
V + H
Sbjct: 350 VSFKTNKTH 358
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 109 (43.4 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L F ++G + A +IMD RSKGYGY+ T E A+ A+ +
Sbjct: 270 LSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEI 329
Query: 61 DVRVIFVDYVRP 72
D R++ +D P
Sbjct: 330 DGRMVNLDLSNP 341
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 106 (42.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 106 (42.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 106 (42.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NTTPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 106 (42.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 106 (42.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 106 (42.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT E L F Q+G +T ++ D RS+G+G++T +T EE A+ + +
Sbjct: 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKV 79
Query: 61 DVRVI 65
D RV+
Sbjct: 80 DGRVV 84
WARNING: HSPs involving 336 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.128 0.346 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 93 93 0.00091 102 3 10 23 0.36 30
29 0.41 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 586
No. of states in DFA: 534 (57 KB)
Total size of DFA: 122 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.41u 0.08s 12.49t Elapsed: 00:00:00
Total cpu time: 12.43u 0.08s 12.51t Elapsed: 00:00:00
Start: Sat May 11 07:46:47 2013 End: Sat May 11 07:46:47 2013
WARNINGS ISSUED: 2