BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042899
(93 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|351724633|ref|NP_001238088.1| uncharacterized protein LOC100527061 [Glycine max]
gi|255631468|gb|ACU16101.1| unknown [Glycine max]
Length = 113
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 55/74 (74%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT+E LA AFSQ+G V KA II++ KNRSKG+GY+ + EEEA KA +DMN +L
Sbjct: 40 LAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVIFAKEEEACKAQIDMNGKIL 99
Query: 61 DVRVIFVDYVRPNR 74
RVI+VD PN+
Sbjct: 100 HGRVIYVDVQLPNK 113
>gi|388521117|gb|AFK48620.1| unknown [Lotus japonicus]
Length = 161
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 59/75 (78%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT++ LA+AFSQ+G+V KA I+++ K RSKG+GY+T + EE+AQKA + MN+ +L
Sbjct: 76 LAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGMNRKIL 135
Query: 61 DVRVIFVDYVRPNRH 75
RV++VD P++H
Sbjct: 136 HGRVLYVDMEPPDKH 150
>gi|359482021|ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|297740158|emb|CBI30340.3| unnamed protein product [Vitis vinifera]
Length = 133
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 60/88 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L++ FSQ+GQV +A I+MD +RSKG+G++T ++EEEAQKA +M+ L
Sbjct: 41 LSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQKARTEMDGKEL 100
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+ R IFVDY +P + + R P +
Sbjct: 101 NGRTIFVDYAKPRADFGGGMPIARGPPE 128
>gi|388502672|gb|AFK39402.1| unknown [Medicago truncatula]
Length = 140
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L+DAFS +GQV +A +I D +SKGYG++T ++++EA+KA+ +MN+ L
Sbjct: 39 LSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEMNEKAL 98
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+ RV+FVDY +P+ + + R P +
Sbjct: 99 NGRVVFVDYAKPDTKRSMGMPIARGPPE 126
>gi|224091949|ref|XP_002309412.1| predicted protein [Populus trichocarpa]
gi|222855388|gb|EEE92935.1| predicted protein [Populus trichocarpa]
Length = 139
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 61/88 (69%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L++AFSQ+GQV +A I+MD +RSKG+G++T ++E+EAQKAL +MN L
Sbjct: 46 LSIYTTENGLSEAFSQYGQVVEAKIVMDRALDRSKGFGFVTYASEDEAQKALDEMNGKAL 105
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+ RVI+VDY + ++ + R P +
Sbjct: 106 NGRVIYVDYAKLKTNFGGGIPIARGPPE 133
>gi|357457753|ref|XP_003599157.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355488205|gb|AES69408.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 134
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 55/77 (71%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT+E LA+AFSQ+G V KA I+++ K R KG+GY+T + EEEA+KA + MN +L
Sbjct: 39 LAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGMNGKIL 98
Query: 61 DVRVIFVDYVRPNRHYN 77
RV++VD PN N
Sbjct: 99 HGRVLYVDMDPPNEQKN 115
>gi|255579369|ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
gi|223529933|gb|EEF31861.1| RNA binding protein, putative [Ricinus communis]
Length = 127
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 59/88 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT + L +AFSQ+GQV +ATI+ D +RSKG+G++T ++E+EA AL +MN L
Sbjct: 38 LSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSEMNGKTL 97
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+ RVI+VDY +P + + R P +
Sbjct: 98 NGRVIYVDYAKPRTDSRNEVPIARGPPE 125
>gi|351725383|ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
gi|255631508|gb|ACU16121.1| unknown [Glycine max]
Length = 130
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 60/88 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+ L++AFS +GQV +A I+ D +RSKG+G++T ++++EA+ A+ DM L
Sbjct: 36 LSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDMKGKTL 95
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+ RVIFVDY +PN + + + R P +
Sbjct: 96 NGRVIFVDYAKPNINTRGEIPIARGPPE 123
>gi|30683481|ref|NP_565646.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|106879155|gb|ABF82607.1| At2g27330 [Arabidopsis thaliana]
gi|330252880|gb|AEC07974.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 116
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 56/79 (70%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFS+T+E L AFSQ+GQV K +IMD + R KG+ Y+T S++EEA+KAL+++N L+
Sbjct: 28 ISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLV 87
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D RV+ +D + +H D
Sbjct: 88 DGRVVILDTTKAAKHNPPD 106
>gi|359479548|ref|XP_003632289.1| PREDICTED: cold-inducible RNA-binding protein-like [Vitis vinifera]
gi|296084877|emb|CBI28286.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 53/69 (76%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFSTT++ LA+AFSQFG+V +A IIMD K R KG+ Y+T + E+EA+KAL +MN ++
Sbjct: 41 ISFSTTEKTLAEAFSQFGEVVEAKIIMDKRKLRPKGFAYVTFTREDEAEKALTEMNGKVV 100
Query: 61 DVRVIFVDY 69
D R + VDY
Sbjct: 101 DGRTVLVDY 109
>gi|15239958|ref|NP_196239.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|9759319|dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana]
gi|17065276|gb|AAL32792.1| Unknown protein [Arabidopsis thaliana]
gi|20260002|gb|AAM13348.1| unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis thaliana]
gi|332003601|gb|AED90984.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 146
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L++AFS+ GQV +A I+MD +RSKG+G++T ++ +EAQKAL++ N L
Sbjct: 41 LSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQL 100
Query: 61 DVRVIFVDYVRPNRHYNTDAS--LVRQP 86
+ R IFVDY + + + R P
Sbjct: 101 NGRTIFVDYAKAKQSLGGGGGYPIARGP 128
>gi|297806641|ref|XP_002871204.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
gi|297317041|gb|EFH47463.1| hypothetical protein ARALYDRAFT_487428 [Arabidopsis lyrata subsp.
lyrata]
Length = 144
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 56/77 (72%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L++AFS+ GQV +A I+MD +RSKG+G++T ++ +EAQKAL++ N
Sbjct: 41 LSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASVDEAQKALMEFNGQQF 100
Query: 61 DVRVIFVDYVRPNRHYN 77
+ RVIFVDY + + +
Sbjct: 101 NGRVIFVDYAKAKQSFG 117
>gi|449462934|ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT + L++AFSQ+GQV +AT++MD ++SKG+G++T ++ +EA AL +MN L
Sbjct: 42 LSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPL 101
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+ RVIFV+Y +P + R P +
Sbjct: 102 NGRVIFVNYAKPTTSSRGAIPIARGPPE 129
>gi|449500867|ref|XP_004161215.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 134
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 59/88 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT + L++AFSQ+GQV +AT++MD ++SKG+G++T ++ +EA AL +MN L
Sbjct: 42 LSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPL 101
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+ RVIFV+Y +P + R P +
Sbjct: 102 NGRVIFVNYAKPTTSSRGAIPIARGPPE 129
>gi|297826049|ref|XP_002880907.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297326746|gb|EFH57166.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 116
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 54/79 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFS+T+E L AFSQ+GQV + +IMD + R KG Y+T S++EEA KAL+++N L+
Sbjct: 28 ISFSSTEETLTQAFSQYGQVLRVDVIMDKIRCRPKGIAYVTFSSKEEAGKALLELNGRLV 87
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D RV+ +D + +H D
Sbjct: 88 DGRVVILDITKAGKHNPPD 106
>gi|255565709|ref|XP_002523844.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
gi|223536932|gb|EEF38570.1| Cold-inducible RNA-binding protein, putative [Ricinus communis]
Length = 121
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 50/70 (71%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFS+T E L +AFS+FG++ + II D +R KGY Y+T +TE EA+KAL +MN ++
Sbjct: 41 ISFSSTTESLTEAFSKFGEIVEVNIIKDKAMDRPKGYAYVTFATENEAKKALTEMNGKVI 100
Query: 61 DVRVIFVDYV 70
D R +FVD V
Sbjct: 101 DGRPVFVDNV 110
>gi|351725889|ref|NP_001237108.1| uncharacterized protein LOC100305561 [Glycine max]
gi|255625921|gb|ACU13305.1| unknown [Glycine max]
Length = 180
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L +AF FGQ+ + ++MD NR +G+ ++ +TEEE+QKA+ M+ L
Sbjct: 95 LSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFL 154
Query: 61 DVRVIFVDYVRP 72
D RVIFV+ +P
Sbjct: 155 DGRVIFVEVAKP 166
>gi|225464267|ref|XP_002271224.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|296088019|emb|CBI35302.3| unnamed protein product [Vitis vinifera]
Length = 170
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L +AF FGQ+ + ++MD NR +G+ ++ STEEE++KA+ M+ L
Sbjct: 86 LSFRTTEESLRNAFETFGQLVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFL 145
Query: 61 DVRVIFVDYVRP 72
D RVIFV+ +P
Sbjct: 146 DGRVIFVEVAKP 157
>gi|116781215|gb|ABK22008.1| unknown [Picea sitchensis]
Length = 140
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 54/79 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L +AFS+FG+V + ++MD RSKG+G++ ++E +A++A +MN +L
Sbjct: 39 LSFYTTEKALTEAFSRFGEVVEVKVVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVL 98
Query: 61 DVRVIFVDYVRPNRHYNTD 79
R+IFVD V+P + D
Sbjct: 99 SGRIIFVDTVKPKSQLSGD 117
>gi|224104887|ref|XP_002313606.1| predicted protein [Populus trichocarpa]
gi|222850014|gb|EEE87561.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 51/69 (73%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFS+T++ +A+AFS+FG+V +A I+MD + R KGYG++T + ++ A+KA MN LL
Sbjct: 41 LSFSSTEKKIAEAFSEFGEVIEAKIVMDKARKRPKGYGFVTFAKKDAAEKACEGMNGKLL 100
Query: 61 DVRVIFVDY 69
D R I+V +
Sbjct: 101 DGRAIYVRF 109
>gi|38344030|emb|CAE01512.2| OJ991214_12.1 [Oryza sativa Japonica Group]
gi|38346331|emb|CAE02067.2| OJ000126_13.13 [Oryza sativa Japonica Group]
gi|116309334|emb|CAH66418.1| H0622F05.1 [Oryza sativa Indica Group]
gi|116309399|emb|CAH66476.1| OSIGBa0137L20.5 [Oryza sativa Indica Group]
Length = 137
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ LA+AFSQ+GQV +ATI+ D NR KG+G++ ++EE A KA +MN +L+ RVI
Sbjct: 49 TEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMNGKVLNGRVI 108
Query: 66 FVDYVRPNRHYNTDAS 81
+VD + + TD+S
Sbjct: 109 YVDIAKAKMNRTTDSS 124
>gi|388505224|gb|AFK40678.1| unknown [Lotus japonicus]
Length = 187
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L + F FGQ+ ++MD NR +G+ ++ +TEEE+QKA+ M+ L
Sbjct: 101 LSFRTTEESLRNCFKNFGQLVDVNLVMDKLANRPRGFAFLRYATEEESQKAIEGMHGKFL 160
Query: 61 DVRVIFVDYVRP 72
D RVIFV+ +P
Sbjct: 161 DGRVIFVEVAKP 172
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T++ LA+AF+++GQV +ATI+ D NRSKG+G++ ++EEEA KA +MN +L+ RV
Sbjct: 47 ATEDTLAEAFARYGQVLEATIVTDKMTNRSKGFGFVKFASEEEANKARDEMNGKVLNGRV 106
Query: 65 IFVDYVRPNRHYNTD 79
I+VD + + TD
Sbjct: 107 IYVDIAKAKQDRATD 121
>gi|357510439|ref|XP_003625508.1| RNA binding protein [Medicago truncatula]
gi|355500523|gb|AES81726.1| RNA binding protein [Medicago truncatula]
Length = 141
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS FGQ+ +A +I D G RSKG+ +++ ST EEA+KA MN LD V
Sbjct: 46 TTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGMNAKFLDGWV 105
Query: 65 IFVDYVRP 72
IFVD +P
Sbjct: 106 IFVDPAKP 113
>gi|224120444|ref|XP_002318331.1| predicted protein [Populus trichocarpa]
gi|222859004|gb|EEE96551.1| predicted protein [Populus trichocarpa]
Length = 181
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L +AF FGQ+ ++MD R +G+ ++ TEEEAQKA+ M+ L
Sbjct: 97 LSFRTTEESLRNAFQNFGQLVDVNLVMDKVAKRPRGFAFLRYETEEEAQKAIEGMHGKFL 156
Query: 61 DVRVIFVDYVRP 72
D RVIFV+ +P
Sbjct: 157 DGRVIFVEVAKP 168
>gi|255581040|ref|XP_002531336.1| RNA binding protein, putative [Ricinus communis]
gi|223529058|gb|EEF31043.1| RNA binding protein, putative [Ricinus communis]
Length = 144
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS FGQ+ A +I+D RSKG+G++T +T EEA+KA MN LD V
Sbjct: 47 TTDEKLKEAFSPFGQLVDAKVIIDRASGRSKGFGFITYATIEEAEKAREGMNAKFLDGWV 106
Query: 65 IFVD 68
IFVD
Sbjct: 107 IFVD 110
>gi|15224298|ref|NP_181287.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20197470|gb|AAM15089.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21536972|gb|AAM61313.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|114050677|gb|ABI49488.1| At2g37510 [Arabidopsis thaliana]
gi|330254316|gb|AEC09410.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 142
Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L DAF+ FGQ+ A +I D RSKG+G++T +T E+A+KA +MN LD V
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104
Query: 65 IFVD 68
IFVD
Sbjct: 105 IFVD 108
>gi|297827259|ref|XP_002881512.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
gi|297327351|gb|EFH57771.1| hypothetical protein ARALYDRAFT_902894 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L DAF+ FGQ+ A +I D RSKG+G++T +T E+A+KA +MN LD V
Sbjct: 45 TTNEKLQDAFASFGQLVDARVITDRETGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWV 104
Query: 65 IFVD 68
IFVD
Sbjct: 105 IFVD 108
>gi|351724829|ref|NP_001237071.1| uncharacterized protein LOC100306326 [Glycine max]
gi|255628209|gb|ACU14449.1| unknown [Glycine max]
Length = 139
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 44/68 (64%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T E L +AFS FGQ+ +A +I+D RSKG+ ++T +T EEA+KA MN LD V
Sbjct: 44 TIDEKLKEAFSSFGQLVEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWV 103
Query: 65 IFVDYVRP 72
IFVD +P
Sbjct: 104 IFVDPAKP 111
>gi|388519245|gb|AFK47684.1| unknown [Lotus japonicus]
Length = 138
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT L +AF+ FGQ+ +A +I D RSKG+G+++ ++ EEA+KA MN L
Sbjct: 38 LSRQTTDRKLNEAFAPFGQLIEAKVITDRASGRSKGFGFVSYASIEEAEKAGKGMNAKFL 97
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQS 89
D VIFVD +P S +QP+++
Sbjct: 98 DGWVIFVDPAKPREPRPPMQSESQQPSET 126
>gi|242036137|ref|XP_002465463.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
gi|241919317|gb|EER92461.1| hypothetical protein SORBIDRAFT_01g039290 [Sorghum bicolor]
Length = 169
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 11/89 (12%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L AF+ FG++ +A ++ D RSKG+G++ +T EEA+KA +MN LD V
Sbjct: 74 TTDEKLQGAFAPFGRILEAKVVTDRVSGRSKGFGFVRYATIEEAEKARQEMNAKFLDGWV 133
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
IFVD +P RQP +P+++
Sbjct: 134 IFVDPAKP-----------RQPKPAPEQD 151
>gi|225439737|ref|XP_002274178.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|297741476|emb|CBI32608.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS FGQ+ +A +I D RSKG+G++T +T EEA+KA MN LD V
Sbjct: 45 TTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWV 104
Query: 65 IFVD 68
IFVD
Sbjct: 105 IFVD 108
>gi|326505708|dbj|BAJ95525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 226
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT E L DAFS++G+VT+A ++MD RS+G+ ++T ++ ++A+ DMN + L
Sbjct: 14 LSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKAMEEAIEDMNGLDL 73
Query: 61 DVRVIFVDYVRP---NRHYNTDASLVR 84
+ R I VD +P R N D R
Sbjct: 74 EGRAITVDKAQPQGVGRDRNGDRDFDR 100
>gi|361067299|gb|AEW07961.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126579|gb|AFG43909.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126581|gb|AFG43910.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126583|gb|AFG43911.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126585|gb|AFG43912.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126587|gb|AFG43913.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126589|gb|AFG43914.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
gi|383126591|gb|AFG43915.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L +AFS+FG+V + I+MD RSKG+G++ ++E +A++A +MN +L R+IFVD
Sbjct: 4 LTEAFSRFGEVVEVKIVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIFVDD 63
Query: 70 VRPNRHYNTD 79
V+P + D
Sbjct: 64 VKPKSQLSGD 73
>gi|218195435|gb|EEC77862.1| hypothetical protein OsI_17125 [Oryza sativa Indica Group]
Length = 152
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 48/71 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L +AF +FGQ+T+ ++M+ R +G+ +++ ++EEE++ A+ M L
Sbjct: 77 LSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSYASEEESKNAMEGMQGKFL 136
Query: 61 DVRVIFVDYVR 71
D RVIFV+ R
Sbjct: 137 DGRVIFVEVAR 147
>gi|222629430|gb|EEE61562.1| hypothetical protein OsJ_15917 [Oryza sativa Japonica Group]
Length = 149
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 48/71 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L +AF +FGQ+T+ ++M+ R +G+ +++ ++EEE++ A+ M L
Sbjct: 74 LSFRTTEESLRNAFERFGQLTEVNLVMERVAKRPRGFAFLSYASEEESKNAMEGMQGKFL 133
Query: 61 DVRVIFVDYVR 71
D RVIFV+ R
Sbjct: 134 DGRVIFVEVAR 144
>gi|357122439|ref|XP_003562923.1| PREDICTED: uncharacterized protein LOC100844345 [Brachypodium
distachyon]
Length = 206
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT E L DAF +FG VT+A +++D RS+G+ ++T +++ + A+ DMN + L
Sbjct: 14 LSWSTTDESLKDAFRKFGNVTEAKVVLDKFSGRSRGFAFVTFDEKKDMEAAIEDMNGLDL 73
Query: 61 DVRVIFVDYVRP---NRHYNTDASLVRQ 85
D R I VD +P R N D R
Sbjct: 74 DGRAITVDKAQPQGAGRDRNGDRDYDRD 101
>gi|226529880|ref|NP_001150360.1| RNA binding protein [Zea mays]
gi|195638638|gb|ACG38787.1| RNA binding protein [Zea mays]
gi|414866145|tpg|DAA44702.1| TPA: RNA binding protein [Zea mays]
Length = 166
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 11/89 (12%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L AF+ FG++ +A ++ D RSKG+G++ +T EEA++A +MN LD V
Sbjct: 71 TTDEKLQGAFAPFGRLLEAKVVTDRVSGRSKGFGFVRYATIEEAERARQEMNAKFLDGWV 130
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
IFVD +P RQP +P+++
Sbjct: 131 IFVDPAKP-----------RQPKPAPQQD 148
>gi|115452257|ref|NP_001049729.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|108707493|gb|ABF95288.1| RNA-binding protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113548200|dbj|BAF11643.1| Os03g0278800 [Oryza sativa Japonica Group]
gi|125543333|gb|EAY89472.1| hypothetical protein OsI_11004 [Oryza sativa Indica Group]
gi|125585797|gb|EAZ26461.1| hypothetical protein OsJ_10350 [Oryza sativa Japonica Group]
Length = 173
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF+ FGQ+ +A +I D RSKG+G++ +T EEA+ A +MN LD V
Sbjct: 78 TTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWV 137
Query: 65 IFVDYVRPNRH 75
IFVD +P +
Sbjct: 138 IFVDPAKPRQQ 148
>gi|297842099|ref|XP_002888931.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297334772|gb|EFH65190.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 181
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L D F QFG++ ++MD NR +G+ ++ TEEEA KA+ M+ L
Sbjct: 84 LSFRTTEDTLRDTFEQFGKLIHMNLVMDKVANRPRGFAFLRYETEEEAMKAIQGMHGKFL 143
Query: 61 DVRVIFVD 68
D RVIFV+
Sbjct: 144 DGRVIFVE 151
>gi|125543335|gb|EAY89474.1| hypothetical protein OsI_11005 [Oryza sativa Indica Group]
Length = 173
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF+ FGQ+ +A +I D RSKG+G++ +T EEA+ A +MN LD V
Sbjct: 78 TTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQEMNAKFLDGWV 137
Query: 65 IFVDYVRPNRH 75
IFVD +P +
Sbjct: 138 IFVDPAKPRQQ 148
>gi|357454123|ref|XP_003597342.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486390|gb|AES67593.1| Cold-inducible RNA-binding protein [Medicago truncatula]
Length = 142
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L FS FG +T+AT+I D R KG+G+++ +E EA+KA +N ++
Sbjct: 67 LSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIV 126
Query: 61 DVRVIFVDYVRP 72
D R+IFV++ +P
Sbjct: 127 DGRLIFVEHAKP 138
>gi|15219486|ref|NP_177494.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|11120799|gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana]
gi|62867629|gb|AAY17418.1| At1g73530 [Arabidopsis thaliana]
gi|114050615|gb|ABI49457.1| At1g73530 [Arabidopsis thaliana]
gi|332197351|gb|AEE35472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 181
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L D F QFG + ++MD NR KG+ ++ TEEEA KA+ M+ L
Sbjct: 84 LSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFL 143
Query: 61 DVRVIFVD 68
D RVIFV+
Sbjct: 144 DGRVIFVE 151
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT E L DAFS++G+VT+A ++MD RS+G+ ++T ++ ++A+ DMN + L
Sbjct: 50 LSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKAMEEAIEDMNGLDL 109
Query: 61 DVRVIFVDYVRP---NRHYNTDASLVR 84
+ R I VD +P R N D R
Sbjct: 110 EGRAITVDKAQPQGVGRDRNGDRDFDR 136
>gi|226499338|ref|NP_001149519.1| glycine-rich RNA-binding protein 8 [Zea mays]
gi|195627730|gb|ACG35695.1| glycine-rich RNA-binding protein 8 [Zea mays]
Length = 198
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT E L DAFS+FG +T+A +++D RS+G+G++T ++ + A+ MN + L
Sbjct: 14 LSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEGMNGLDL 73
Query: 61 DVRVIFVDYVR---PNRHYNTDASLVRQ 85
D R I VD + P R N D R+
Sbjct: 74 DGRNITVDKAQPQGPGRDRNGDRDYDRE 101
>gi|440577321|emb|CCI55328.1| PH01B001I13.24 [Phyllostachys edulis]
Length = 196
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L AF +FGQ+T+ ++MD R +G+ +++ + EEE++ A+ M+ L
Sbjct: 123 LSFRTTEESLRSAFERFGQLTEVNLVMDRVAKRPRGFAFLSYANEEESKNAMEGMHGKFL 182
Query: 61 DVRVIFVD 68
D RVIFV+
Sbjct: 183 DGRVIFVE 190
>gi|238014210|gb|ACR38140.1| unknown [Zea mays]
gi|414873814|tpg|DAA52371.1| TPA: glycine-rich RNA-binding protein 8 isoform 1 [Zea mays]
gi|414873815|tpg|DAA52372.1| TPA: glycine-rich RNA-binding protein 8 isoform 2 [Zea mays]
gi|414873816|tpg|DAA52373.1| TPA: glycine-rich RNA-binding protein 8 isoform 3 [Zea mays]
Length = 205
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT E L DAFS+FG +T+A +++D RS+G+G++T ++ + A+ MN + L
Sbjct: 14 LSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDAIEGMNGLDL 73
Query: 61 DVRVIFVDYVR---PNRHYNTDASLVRQ 85
D R I VD + P R N D R+
Sbjct: 74 DGRNITVDKAQPQGPGRDRNGDRDYDRE 101
>gi|357454121|ref|XP_003597341.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|355486389|gb|AES67592.1| Cold-inducible RNA-binding protein [Medicago truncatula]
gi|388509994|gb|AFK43063.1| unknown [Medicago truncatula]
Length = 89
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L FS FG +T+AT+I D R KG+G+++ +E EA+KA +N ++
Sbjct: 14 LSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKALNGRIV 73
Query: 61 DVRVIFVDYVRP 72
D R+IFV++ +P
Sbjct: 74 DGRLIFVEHAKP 85
>gi|242080503|ref|XP_002445020.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
gi|241941370|gb|EES14515.1| hypothetical protein SORBIDRAFT_07g002960 [Sorghum bicolor]
Length = 140
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L DAF++FG+V A ++ D SKG+G++ +T EEA K + M+ LD V
Sbjct: 46 TTTEGLRDAFAKFGEVVHARVVTDRVSGFSKGFGFVRYATTEEATKGIEGMDGKFLDGWV 105
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQS 89
IF +Y RP R A + P QS
Sbjct: 106 IFAEYARP-RAPPEQAEMNSPPQQS 129
>gi|356505124|ref|XP_003521342.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 139
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T E L +AFS FGQ+ +A +I D RSKG+ ++T +T EEA++A MN LD V
Sbjct: 44 TKDENLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAERAREGMNAKFLDGWV 103
Query: 65 IFVDYVRP 72
IFVD +P
Sbjct: 104 IFVDPAKP 111
>gi|406950086|gb|EKD80418.1| cp31AHv protein [uncultured bacterium]
Length = 122
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L FSQ G V+ A +I D RSKG+G++ S++EEAQKA+ ++N L
Sbjct: 10 LAWATTDDSLQAFFSQAGTVSSARVITDRATGRSKGFGFVEMSSDEEAQKAVAELNGKEL 69
Query: 61 DVRVIFVDYVRP 72
D R I V+ RP
Sbjct: 70 DGRAIVVNEARP 81
>gi|449516497|ref|XP_004165283.1| PREDICTED: glycine-rich RNA-binding protein 2-like, partial
[Cucumis sativus]
Length = 100
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS FGQ+ A ++ D RSKG+ ++T ST +EA+KA +MN LD V
Sbjct: 5 TTDEKLREAFSSFGQLADAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWV 64
Query: 65 IFVD 68
IFVD
Sbjct: 65 IFVD 68
>gi|224115158|ref|XP_002316957.1| predicted protein [Populus trichocarpa]
gi|222860022|gb|EEE97569.1| predicted protein [Populus trichocarpa]
Length = 153
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT E L +AFS+FG+V +A ++ D SKG+G++ +T E+A + + M+ L
Sbjct: 62 LSKRTTSEGLQEAFSKFGEVVQARVVTDRVSGYSKGFGFVKYATLEDAAEGIKGMDGQFL 121
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
D VIF +Y RP RQP P+ N
Sbjct: 122 DGWVIFAEYARP-----------RQPPSEPQNN 143
>gi|449448655|ref|XP_004142081.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 146
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS FGQ+ A ++ D RSKG+ ++T ST +EA+KA +MN LD V
Sbjct: 51 TTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWV 110
Query: 65 IFVD 68
IFVD
Sbjct: 111 IFVD 114
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
gi|224285462|gb|ACN40453.1| unknown [Picea sitchensis]
Length = 198
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L +AFS +G+V IIM+ RSKG+G++ STEEEA AL +MN +L
Sbjct: 95 LSIYTTERTLQNAFSNYGKVVDVRIIMNKTTRRSKGFGFVEFSTEEEANTALKEMNGKIL 154
Query: 61 DVRVIFVDYVRP 72
+ +I VD +P
Sbjct: 155 NGWLISVDIAKP 166
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAFS +GQVT+A +IMD RS+G+G++T ++ EEA A+ M+ L
Sbjct: 38 ISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAITGMDGKDL 97
Query: 61 DVRVIFVDYV 70
R++ V Y
Sbjct: 98 QGRIVRVSYA 107
>gi|226498016|ref|NP_001151732.1| RNA binding protein [Zea mays]
gi|195649405|gb|ACG44170.1| RNA binding protein [Zea mays]
Length = 147
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+ L DAF +FG +T+ ++MD R +G+ +++ + EEEA+ A+ M+ L
Sbjct: 72 LSFRTTERSLRDAFEKFGDLTEVCLVMDRVAKRPRGFAFLSYTGEEEARGAMEGMHGKFL 131
Query: 61 DVRVIFVDYVR 71
D RVIFV+ +
Sbjct: 132 DGRVIFVEVAK 142
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S T E L AF +FG VT ++ D RSKG+G++T +E+A+KA+ +MN+ L
Sbjct: 9 LAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQEL 68
Query: 61 DVRVIFVDYVRP 72
+ R I VD RP
Sbjct: 69 EGRRIKVDVSRP 80
>gi|395330687|gb|EJF63070.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 272
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L D FS+FG+V K I+ D +RS+G+G++T ST EEA + + ++N + L
Sbjct: 82 LSIRTTERDLDDEFSRFGRVEKVVIVYDQRSDRSRGFGFITMSTTEEATRCIKELNGVEL 141
Query: 61 DVRVIFVDY 69
+ R I VDY
Sbjct: 142 NGRRIRVDY 150
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT E L DAF +FG +T+A ++ D RS+G+G++T ++ + A+ MN + L
Sbjct: 14 LSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDAIEGMNGLDL 73
Query: 61 DVRVIFVDYVR---PNRHYNTDASLVR 84
D R I VD + P R N D R
Sbjct: 74 DGRAITVDKAQPQGPGRDRNGDRDYDR 100
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing
protein [Entamoeba nuttalli P19]
Length = 136
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S T E L AF +FG VT ++ D RSKG+G++T +E+A+KA+ +MN+ L
Sbjct: 9 LAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEMNEQEL 68
Query: 61 DVRVIFVDYVRP 72
+ R I VD RP
Sbjct: 69 EGRRIKVDVSRP 80
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S E L AFSQFG VT A ++MD RSKG+G++ T EAQ A+ MN L
Sbjct: 10 LAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
+ R + V+ RP
Sbjct: 70 EGRAVVVNEARP 81
>gi|224124176|ref|XP_002319264.1| predicted protein [Populus trichocarpa]
gi|118487492|gb|ABK95573.1| unknown [Populus trichocarpa]
gi|222857640|gb|EEE95187.1| predicted protein [Populus trichocarpa]
Length = 149
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT E L +AFS+FG+V +A ++ D SKG+G++ T E+A + + M+ L
Sbjct: 61 LSKRTTTEGLQEAFSKFGEVVQAKVVTDRTSGYSKGFGFVRYGTLEDAAEGIKGMDGQFL 120
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
D VIF +Y RP +QP P+ N
Sbjct: 121 DGWVIFAEYARP-----------KQPPSQPQNN 142
>gi|361067297|gb|AEW07960.1| Pinus taeda anonymous locus 0_15424_01 genomic sequence
Length = 84
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L +AFS+FG+V + I+MD RSKG+G++ ++E +A++A +MN +L R+IFVD
Sbjct: 4 LTEAFSRFGEVVEVKIVMDRVSQRSKGFGFVQYASEADAERAKAEMNGKVLSGRIIFVDD 63
Query: 70 VRPNRHYNTD 79
V+ + D
Sbjct: 64 VKAKSQLSGD 73
>gi|449494871|ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
sativus]
Length = 95
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L + FS FG +++A +I D R KG+G++T + EA+KAL M+ ++D R+
Sbjct: 18 TTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRL 77
Query: 65 IFVDYVRPNRH 75
IFV++ + +H
Sbjct: 78 IFVEFAKTEKH 88
>gi|242073000|ref|XP_002446436.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
gi|241937619|gb|EES10764.1| hypothetical protein SORBIDRAFT_06g016070 [Sorghum bicolor]
Length = 135
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T+E LA+AFS++GQV +AT++ D + KG+G++ ++ EEA A +MN L+ RV
Sbjct: 46 ATEESLAEAFSRYGQVIEATVVRDKVTDIPKGFGFVKFASPEEANNAREEMNGKALNGRV 105
Query: 65 IFVDYVRPNRHYNTDA-SLVRQPAQ 88
I+VD + TDA + R P +
Sbjct: 106 IYVDIAKAKPDRATDALPIARGPPK 130
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VS+ST + L +AFS++G V A IIMD RS+G+G++T +T EEA AL M+ L
Sbjct: 47 VSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKEL 106
Query: 61 DVRVIFVDYV 70
D R + V+Y
Sbjct: 107 DGRTVRVNYA 116
>gi|15239676|ref|NP_200269.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|9758950|dbj|BAB09337.1| unnamed protein product [Arabidopsis thaliana]
gi|18175762|gb|AAL59923.1| unknown protein [Arabidopsis thaliana]
gi|20465513|gb|AAM20239.1| unknown protein [Arabidopsis thaliana]
gi|21553374|gb|AAM62467.1| unknown [Arabidopsis thaliana]
gi|332009129|gb|AED96512.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 156
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L AF+QFG+V A ++ D SKG+G++ +T E++ K + M+ LD V
Sbjct: 67 TTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWV 126
Query: 65 IFVDYVRP---NRHYNTDASLVRQP 86
IF +Y RP ++ Y ++ R P
Sbjct: 127 IFAEYARPREQSQSYQPQNNMSRPP 151
>gi|384099683|ref|ZP_10000766.1| RNP-1 like RNA-binding protein [Imtechella halotolerans K1]
gi|383832219|gb|EID71694.1| RNP-1 like RNA-binding protein [Imtechella halotolerans K1]
Length = 92
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T++E L D F+ FG+V+ +I+D NRS+G+ ++ E A A+ +N+ +L
Sbjct: 8 LSFQTSEEQLLDVFTPFGEVSSVKVIVDGYSNRSRGFAFVEMPVSEHALTAIERLNESML 67
Query: 61 DVRVIFVDYVRPNR 74
D RVI V+ +P R
Sbjct: 68 DSRVIVVNEAKPKR 81
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++ T++ L DAFS+FGQV A+II D RSKG+G++ E EA++A+ MN+ L
Sbjct: 8 LAYTVTEDDLRDAFSEFGQVESASIINDKFSGRSKGFGFVDMPNESEAREAIESMNEKDL 67
Query: 61 DVRVIFVDYVRP 72
+ R I V+ +P
Sbjct: 68 NGRTIKVNEAKP 79
>gi|297792921|ref|XP_002864345.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310180|gb|EFH40604.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L AF+QFG+V A ++ D SKG+G++ +T E++ K + M+ LD V
Sbjct: 67 TTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWV 126
Query: 65 IFVDYVRP---NRHYNTDASLVRQP 86
IF +Y RP ++ Y ++ R P
Sbjct: 127 IFAEYARPREQSQPYQPQNNMSRPP 151
>gi|378727388|gb|EHY53847.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 179
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L + FSQFG + +A ++ D NRS+G+G++ +T+ EA +A+ MN
Sbjct: 9 LAWHTTDETLYEGFSQFGNIEEAVVVKDRDTNRSRGFGFVRFATKAEADEAMQRMNNTQF 68
Query: 61 DVRVIFVDYVR 71
D R+I VD+ +
Sbjct: 69 DGRLIRVDHAQ 79
>gi|226496497|ref|NP_001150207.1| LOC100283837 [Zea mays]
gi|195621336|gb|ACG32498.1| nucleolin [Zea mays]
gi|195637560|gb|ACG38248.1| nucleolin [Zea mays]
gi|223948323|gb|ACN28245.1| unknown [Zea mays]
gi|413917478|gb|AFW57410.1| nucleolin [Zea mays]
Length = 140
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF++FG+V A ++ D SKG+G++ +T EEA K + + LD V
Sbjct: 46 TTSEGLREAFAEFGEVLHARVVTDRVSGFSKGFGFVRYATTEEAAKGIEGKDGKFLDGWV 105
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQS 89
IF +Y +P R + + QP QS
Sbjct: 106 IFAEYAKP-RPPPEETGMNSQPQQS 129
>gi|116792076|gb|ABK26221.1| unknown [Picea sitchensis]
Length = 151
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS+FG+V +A ++ D SKG+ ++ +T+EEA K M+ LD V
Sbjct: 58 TTDEGLREAFSKFGRVLEARVVTDKMNGVSKGFAFVRYATQEEADKGKEGMDGKFLDGWV 117
Query: 65 IFVDYVRP 72
IF DY RP
Sbjct: 118 IFADYARP 125
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L D FS+FG + +A ++ D NRS+G+G++ S E EA AL MN
Sbjct: 11 LAWHTTDDTLRDGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSNESEADAALNAMNNQEF 70
Query: 61 DVRVIFVD 68
D RVI VD
Sbjct: 71 DGRVIRVD 78
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L + FSQFG + +A ++ D NRS+G+G++ S+E EA AL MN
Sbjct: 11 LAWHTTDDTLREGFSQFGTIEEAIVVKDRDTNRSRGFGFVRFSSEAEADAALNAMNNQEF 70
Query: 61 DVRVIFVD 68
D RVI VD
Sbjct: 71 DGRVIRVD 78
>gi|388583201|gb|EIM23503.1| hypothetical protein WALSEDRAFT_67167 [Wallemia sebi CBS 633.66]
Length = 89
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST E LA AFS FGQ++ ++ D RS+G+G++T + + EA AL MN++ L
Sbjct: 12 LSWSTNDEDLARAFSPFGQISDYIVMKDRQTGRSRGFGFVTYANDREASSALESMNEVEL 71
Query: 61 DVRVIFVDYV 70
D R I V+Y
Sbjct: 72 DGRRIRVNYA 81
>gi|226509825|ref|NP_001150518.1| ELAV-like protein 4 [Zea mays]
gi|195639828|gb|ACG39382.1| ELAV-like protein 4 [Zea mays]
gi|414590519|tpg|DAA41090.1| TPA: ELAV-like protein 4 [Zea mays]
Length = 129
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS+FGQV +A +I D S+G+G++ +T +EA +A+ M+ LD V
Sbjct: 45 TTSEGLKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIKGMDGKFLDSWV 104
Query: 65 IFVDYVRPNRHYNTDASLVRQPA 87
IF + P+ H+N + L+ + A
Sbjct: 105 IFAE--TPHNHHNKEHQLMIEVA 125
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S T E L AF +FG VT ++ D RSKG+G++T +E+A+KA+ +MN+ L
Sbjct: 9 LAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIEEMNEQEL 68
Query: 61 DVRVIFVDYVRP 72
+ R I VD +P
Sbjct: 69 EGRRIKVDVSKP 80
>gi|218200448|gb|EEC82875.1| hypothetical protein OsI_27755 [Oryza sativa Indica Group]
Length = 141
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AF++FG+V A ++ D SKG+G++ +T E+A K + M+ LD V
Sbjct: 47 TTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFIRYATVEDAAKGIEGMDGKFLDGWV 106
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
IF +Y RP R P Q P+ N
Sbjct: 107 IFAEYARP-----------RTPPQQPEMN 124
>gi|449550007|gb|EMD40972.1| hypothetical protein CERSUDRAFT_111545 [Ceriporiopsis subvermispora
B]
Length = 286
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L D FS+FG+V K TI+ D +RS+G+G++T ST EEA + + ++N + L
Sbjct: 86 LSIRTTERDLDDEFSRFGRVDKVTIVYDQRSDRSRGFGFITMSTTEEAGRCIKELNGVEL 145
Query: 61 DVRVIFVDYVRPNR 74
+ R I VDY +R
Sbjct: 146 NGRRIRVDYSVTDR 159
>gi|449468518|ref|XP_004151968.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
gi|449496932|ref|XP_004160266.1| PREDICTED: nucleolysin TIAR-like [Cucumis sativus]
Length = 174
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF++FG+V A ++ D SKG+G++ +T E+A K + M+ LD V
Sbjct: 90 TTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWV 149
Query: 65 IFVDYVRP 72
IF +Y RP
Sbjct: 150 IFAEYARP 157
>gi|147867424|emb|CAN83272.1| hypothetical protein VITISV_001132 [Vitis vinifera]
Length = 408
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ STEE A AL +MN ++
Sbjct: 323 LSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYSTEEAASAALKEMNGKII 382
Query: 61 DVRVIFVDYVRP 72
+ +I VD +P
Sbjct: 383 NGWMIVVDVAKP 394
>gi|255580168|ref|XP_002530915.1| RNA binding protein, putative [Ricinus communis]
gi|223529509|gb|EEF31464.1| RNA binding protein, putative [Ricinus communis]
Length = 354
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L AFS+FG+V +A ++ D SKG+G++ + E+A+K + M+ LD V
Sbjct: 63 TTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLEDAEKGIEGMDGKFLDGWV 122
Query: 65 IFVDYVRP 72
IF +Y RP
Sbjct: 123 IFAEYARP 130
>gi|390600853|gb|EIN10247.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 329
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D FS+FGQV K TI+ D RS+G+G++ +T E+A KA+ ++N + L
Sbjct: 82 LSIRTQERDLDDEFSRFGQVEKVTIVYDQRSGRSRGFGFIKMATVEDATKAIENLNGVDL 141
Query: 61 DVRVIFVDY 69
+ R I VDY
Sbjct: 142 NGRRIRVDY 150
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S + L AF+QFG VT A ++MD RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
+ R I V+ RP
Sbjct: 70 EGRAIVVNEARP 81
>gi|115474735|ref|NP_001060964.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|38636774|dbj|BAD03017.1| putative RNA recognition motif (RRM)-containing protein [Oryza
sativa Japonica Group]
gi|113622933|dbj|BAF22878.1| Os08g0139000 [Oryza sativa Japonica Group]
gi|215767574|dbj|BAG99802.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639884|gb|EEE68016.1| hypothetical protein OsJ_25986 [Oryza sativa Japonica Group]
Length = 141
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 11/89 (12%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AF++FG+V A ++ D SKG+G++ +T E+A K + M+ LD V
Sbjct: 47 TTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGMDGKFLDGWV 106
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
IF +Y RP R P Q P+ N
Sbjct: 107 IFAEYARP-----------RTPPQQPEMN 124
>gi|193212689|ref|YP_001998642.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193086166|gb|ACF11442.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 88
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + T+ L DAFS+FG V KA++IMD RSKG+G++ + +EEA +A+ +N+ L
Sbjct: 8 LDYEITETDLRDAFSEFGDVAKASVIMDKFSGRSKGFGFVEMTNDEEANEAISSLNESKL 67
Query: 61 DVRVIFVDYVRP 72
R I V+ +P
Sbjct: 68 GSRNIKVNEAKP 79
>gi|381206512|ref|ZP_09913583.1| RNA-binding protein [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 85
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FS +++ L AFSQFG+V+KA++IMD NRSKG+G++ E A+ +N +
Sbjct: 8 LAFSVSEDQLRSAFSQFGKVSKASVIMDRVNNRSKGFGFVEMDDAAEGNSAVEALNGHQI 67
Query: 61 DVRVIFVDYVRP 72
D R V+ +P
Sbjct: 68 DGRAWKVNEAKP 79
>gi|356576299|ref|XP_003556270.1| PREDICTED: uncharacterized protein LOC100791652 [Glycine max]
Length = 386
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + +IMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 304 LSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKII 363
Query: 61 DVRVIFVDYVRPN 73
+ +I VD +PN
Sbjct: 364 NGWMIVVDVAKPN 376
>gi|389744399|gb|EIM85582.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 262
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L D FS+FG+V K TI+ D +RS+G+G++ ST EA+K + ++N + L
Sbjct: 82 LSIRTTERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVAEAEKCIQELNGVDL 141
Query: 61 DVRVIFVDY 69
+ R I VD+
Sbjct: 142 NGRRIRVDF 150
>gi|424843086|ref|ZP_18267711.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
gi|395321284|gb|EJF54205.1| RRM domain-containing RNA-binding protein [Saprospira grandis DSM
2844]
Length = 126
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F TT E L + F+QFG V A IIMD +RSKG+G++ EE+ Q A+ +N+
Sbjct: 8 LNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAIDALNETEF 67
Query: 61 DVRVIFVDYVRP 72
R I V RP
Sbjct: 68 HERTIVVKKARP 79
>gi|379728946|ref|YP_005321142.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
gi|378574557|gb|AFC23558.1| rnp-1 like RNA-binding protein [Saprospira grandis str. Lewin]
Length = 122
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F TT E L + F+QFG V A IIMD +RSKG+G++ EE+ Q A+ +N+
Sbjct: 8 LNFRTTSEELEELFAQFGTVDSAKIIMDRETDRSKGFGFVEMPDEEDGQAAIDALNETEF 67
Query: 61 DVRVIFVDYVRP 72
R I V RP
Sbjct: 68 HERTIVVKKARP 79
>gi|255944269|ref|XP_002562902.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587637|emb|CAP85680.1| Pc20g03510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 151
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+ + L + F QFG++ +A ++ D RS+G+G++ +T+ EA AL MN
Sbjct: 6 LSWHTSDDTLREGFQQFGEIQEAIVVKDRATQRSRGFGFVRFATDAEADAALGAMNNQEF 65
Query: 61 DVRVIFVD--YVRPNR 74
D RVI VD + RP R
Sbjct: 66 DGRVIRVDKAFDRPQR 81
>gi|78189511|ref|YP_379849.1| RNA recognition motif-containing protein [Chlorobium
chlorochromatii CaD3]
gi|78171710|gb|ABB28806.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
chlorochromatii CaD3]
Length = 90
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S T+ L DAF QFGQV A+II D RSKG+G++ + EA++A+ MN+ L
Sbjct: 8 LAYSVTENDLRDAFGQFGQVESASIITDKFSGRSKGFGFVDMPNDSEAREAIGAMNEKEL 67
Query: 61 DVRVIFVDYVRP 72
+ R I V+ +P
Sbjct: 68 NGRPIKVNEAKP 79
>gi|356543191|ref|XP_003540046.1| PREDICTED: nucleolin-like [Glycine max]
Length = 145
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L + F++FG+V A ++ D SKG+G++ +T EEA K + M+ LD V
Sbjct: 60 TTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGMDGKFLDGWV 119
Query: 65 IFVDYVRP 72
IF +Y RP
Sbjct: 120 IFAEYARP 127
>gi|225461185|ref|XP_002283144.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|147854770|emb|CAN78606.1| hypothetical protein VITISV_024164 [Vitis vinifera]
gi|302143178|emb|CBI20473.3| unnamed protein product [Vitis vinifera]
Length = 135
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS+FGQV A ++ D SKG+G++ + E+A + + M+ LD V
Sbjct: 52 TTSEGLHEAFSKFGQVVNARVVTDRVSGYSKGFGFVRYVSLEDAAEGIKGMDGKFLDGWV 111
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
IF +Y RP +P SP+ N
Sbjct: 112 IFAEYARP------------RPPPSPQNN 128
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++ +++ L DAFSQFGQV A II D RSKG+G++ S + EA++A+ MN L
Sbjct: 8 LAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIESMNDQDL 67
Query: 61 DVRVIFVDYVRP 72
R I V+ +P
Sbjct: 68 KGRTIKVNEAKP 79
>gi|118487563|gb|ABK95608.1| unknown [Populus trichocarpa]
Length = 133
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD- 61
+ST + L DAFS FG+VT+A +IMD RS+G+G++ + E A +AL M+ L
Sbjct: 45 WSTDDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSAMDGQNLGG 104
Query: 62 --VRVIFVDYVRPNRHYN 77
VRV F + RP + YN
Sbjct: 105 RTVRVSFAEERRPPQSYN 122
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T E L F++FG VT + I+ D RSKG+G++ S+ E+AQ A+ +N + +D
Sbjct: 12 YSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGLNGLSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|225464121|ref|XP_002264164.1| PREDICTED: uncharacterized protein LOC100265361 [Vitis vinifera]
Length = 409
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 324 LSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 383
Query: 61 DVRVIFVDYVRP 72
+ +I VD +P
Sbjct: 384 NGWMIVVDVAKP 395
>gi|409050086|gb|EKM59563.1| hypothetical protein PHACADRAFT_250155 [Phanerochaete carnosa
HHB-10118-sp]
Length = 277
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L + FS+FG+V K I+ D +RS+G+G++T ST EEA + + ++N + L
Sbjct: 83 LSIRTVERDLDEEFSRFGRVEKVVIVYDQRSDRSRGFGFITMSTVEEASRCIKELNGVEL 142
Query: 61 DVRVIFVDY 69
+ R I VDY
Sbjct: 143 NGRRIRVDY 151
>gi|189499100|ref|YP_001958570.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189494541|gb|ACE03089.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 90
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S ++E L+DAF+QFGQV +A IIMD RSKG+G++ ++EAQ A+ ++ L
Sbjct: 8 LPYSLSEEELSDAFAQFGQVDRANIIMDKETGRSKGFGFVEMPNDDEAQNAIDSLHDSDL 67
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 68 NGRSIKVN 75
>gi|357112848|ref|XP_003558218.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 168
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 41/68 (60%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF FGQV +A +I D RSKG+G++ + +EA+ A MN LD V
Sbjct: 73 TTDEKLKNAFIPFGQVLEAKVITDRISGRSKGFGFVRYVSLQEAEAARQGMNAKFLDGWV 132
Query: 65 IFVDYVRP 72
IFVD +P
Sbjct: 133 IFVDPAKP 140
>gi|116781810|gb|ABK22248.1| unknown [Picea sitchensis]
Length = 215
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L DAF +FG + +A +++D RS+G+G++T ++ + A+ M+ M L
Sbjct: 14 LSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKSMEDAIDSMHGMSL 73
Query: 61 DVRVIFVDYVRP 72
D R I VD RP
Sbjct: 74 DGRSITVDRARP 85
>gi|154416377|ref|XP_001581211.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915436|gb|EAY20225.1| hypothetical protein TVAG_021720 [Trichomonas vaginalis G3]
Length = 202
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L FS+FG V + I + +SKG+G++ +T+EEA KA+ +MNK
Sbjct: 52 LSFETTEESLKIKFSEFGNVISSRIPVRAQSGKSKGFGFIEYATQEEADKAIAEMNKKEF 111
Query: 61 DVRVIFVD 68
+ R I VD
Sbjct: 112 EGRTIVVD 119
>gi|449525960|ref|XP_004169984.1| PREDICTED: uncharacterized LOC101208465 [Cucumis sativus]
Length = 394
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 313 LSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKII 372
Query: 61 DVRVIFVDYVRPN-RHYNTDAS 81
+ +I VD +P+ R Y + S
Sbjct: 373 NGWMIVVDIAKPSPRRYGGNRS 394
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 230 LSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 289
Query: 61 DVRVIFVDYVRP 72
+ +I VD +P
Sbjct: 290 NGWMIVVDVAKP 301
>gi|449446458|ref|XP_004140988.1| PREDICTED: uncharacterized protein LOC101208465 [Cucumis sativus]
Length = 394
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 313 LSFYTSEKTLRAAFEGFGKLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKII 372
Query: 61 DVRVIFVDYVRPN-RHYNTDAS 81
+ +I VD +P+ R Y + S
Sbjct: 373 NGWMIVVDIAKPSPRRYGGNRS 394
>gi|392578419|gb|EIW71547.1| hypothetical protein TREMEDRAFT_56482 [Tremella mesenterica DSM
1558]
Length = 223
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L DAF QFGQV + ++ D RS+G+G++T ST EEA+ ++ MN+ L
Sbjct: 11 LSWNTTDDTLRDAFMQFGQVLDSIVMKDRETGRSRGFGFVTFSTAEEAEISIQQMNEQPL 70
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 71 DGRNIRVN 78
>gi|291514454|emb|CBK63664.1| RNA-binding proteins (RRM domain) [Alistipes shahii WAL 8301]
Length = 116
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+ E L + F QFG+V A +I D RS+G+G++ EEE QKA+ +N
Sbjct: 8 LSWGTSSEGLGNLFMQFGEVASANVITDRETGRSRGFGFVEMPNEEEGQKAIDQLNGTSF 67
Query: 61 DVRVIFVDYVRP 72
+ + I V+ RP
Sbjct: 68 EGQTITVNVARP 79
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S E L +AFSQFG V A ++MD RSKG+G++ ++ EAQ A+ +N +
Sbjct: 10 LAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAINGLNGQAI 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRAIVVNEARP 81
>gi|242215700|ref|XP_002473663.1| predicted protein [Postia placenta Mad-698-R]
gi|220727201|gb|EED81127.1| predicted protein [Postia placenta Mad-698-R]
Length = 638
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L D FS++G+V K I+ D +RS+G+G++T ST +EA + + ++N + L
Sbjct: 60 LSIRTTERDLDDEFSRYGRVEKVVIVYDQRSDRSRGFGFITMSTTDEAGRCIKELNGVDL 119
Query: 61 DVRVIFVDY 69
+ R I VDY
Sbjct: 120 NGRRIRVDY 128
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L DAFS FG++ + +I D RS+G+G+++ T++EAQKA+ M+ +L
Sbjct: 44 LAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSYITDQEAQKAMEAMDGRVL 103
Query: 61 DVRVIFVDYV 70
D R I V+Y
Sbjct: 104 DGRTIRVNYA 113
>gi|194699346|gb|ACF83757.1| unknown [Zea mays]
gi|414587318|tpg|DAA37889.1| TPA: glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T+ LA+AFS++GQV +AT++ D + KG+G++ ++ EEA A +MN L+ RV
Sbjct: 46 ATEASLAEAFSRYGQVIEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGKALNGRV 105
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQSPKEN 93
I+VD + + DA + + P N
Sbjct: 106 IYVDIAKARQDRAADALPIARGPPKPISN 134
>gi|119177425|ref|XP_001240490.1| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
gi|320032129|gb|EFW14085.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
gi|392867546|gb|EAS29215.2| hypothetical protein CIMG_07653 [Coccidioides immitis RS]
Length = 147
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L FS+FG + +A ++ D NRS+G+G++ ++E EA+ A+ +MN
Sbjct: 9 LAWHTTDETLRQGFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQEF 68
Query: 61 DVRVIFVDYV--RP 72
D R I VD RP
Sbjct: 69 DGRTIRVDKAADRP 82
>gi|59802519|gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
Length = 122
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L D F+ +G V A +IMD RSKG+G++ T++EAQ A+ M+ ++
Sbjct: 47 LSWGVTDSQLQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAITGMHGQVI 106
Query: 61 DVRVIFVDYVRPNR 74
+ R + V+ RP +
Sbjct: 107 EGRPLTVNEARPKK 120
>gi|226510389|ref|NP_001150093.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195636652|gb|ACG37794.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 135
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T+ LA+AFS++GQV +AT++ D + KG+G++ ++ EEA A +MN L+ RV
Sbjct: 46 ATEASLAEAFSRYGQVIEATVVRDKVTDVPKGFGFVKFASPEEANNAREEMNGKALNGRV 105
Query: 65 IFVDYVRPNRHYNTDA-SLVRQP 86
I+VD + + DA + R P
Sbjct: 106 IYVDIAKARQDRAADALPIARGP 128
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E LA+AF+++G + K +I D RS+G+G++ E+A+ AL MN +
Sbjct: 12 LSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGMNGKSV 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRTIRVD 79
>gi|395007942|ref|ZP_10391636.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
gi|394314048|gb|EJE51000.1| RRM domain-containing RNA-binding protein [Acidovorax sp. CF316]
Length = 117
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T L FS+FG VT A ++MD RSKG+G++ ++ E AQ A+ ++ M +D
Sbjct: 12 YSVTDSTLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|212276175|ref|NP_001130201.1| hypothetical protein [Zea mays]
gi|194688532|gb|ACF78350.1| unknown [Zea mays]
gi|414887483|tpg|DAA63497.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
gi|414887484|tpg|DAA63498.1| TPA: hypothetical protein ZEAMMB73_917992 [Zea mays]
Length = 308
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF+T + L DAFS+FG V +A II+D RS+G+G++T ++ EEA A+ M+ L
Sbjct: 39 LSFATDETTLKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAMTSMDGKEL 98
Query: 61 DVRVIFVDYV 70
R I V++
Sbjct: 99 QGRNIRVNHA 108
>gi|297819134|ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
gi|297323288|gb|EFH53709.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata]
Length = 102
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L FS FGQ+ +A +I D R KG+G++T +E++A+KAL ++ +++ R+
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDARKALKSLDGKIVEGRL 77
Query: 65 IFVDYVRPNRHYNTD 79
IFV+ + + TD
Sbjct: 78 IFVEVAKSSEEVTTD 92
>gi|118474079|ref|YP_892397.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|424821065|ref|ZP_18246103.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
gi|118413305|gb|ABK81725.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. fetus 82-40]
gi|342327844|gb|EGU24328.1| RNA-binding region RNP-1 [Campylobacter fetus subsp. venerealis
NCTC 10354]
Length = 82
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+ L + FS FG+VT+A I+ D NRSKG+G++ S++E+A+KA+ N +
Sbjct: 9 LSYRMTESELREVFSSFGEVTRAKIVKDKETNRSKGFGFVEMSSDEQAKKAIEGTNGKEV 68
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 69 GGRALRVNEARP 80
>gi|425781282|gb|EKV19258.1| hypothetical protein PDIG_04180 [Penicillium digitatum PHI26]
gi|425783364|gb|EKV21218.1| hypothetical protein PDIP_08850 [Penicillium digitatum Pd1]
Length = 162
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+ + L + F QFG++ +A ++ D RS+G+G++ +T+ EA AL MN
Sbjct: 9 LSWHTSDDTLREGFQQFGEIQEAIVVKDRATLRSRGFGFVRFATDAEADSALGAMNNQEF 68
Query: 61 DVRVIFVD--YVRPNR 74
D RVI VD + RP R
Sbjct: 69 DGRVIRVDKAFDRPQR 84
>gi|226491121|ref|NP_001143351.1| uncharacterized protein LOC100275970 [Zea mays]
gi|195618716|gb|ACG31188.1| hypothetical protein [Zea mays]
Length = 295
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF+T + L DAFS+FG V +A II+D RS+G+G++T ++ EEA A+ M+ L
Sbjct: 39 LSFATDETTLKDAFSEFGNVLEARIIIDRESGRSRGFGFITFTSTEEASAAMTSMDGKEL 98
Query: 61 DVRVIFVDYV 70
R I V++
Sbjct: 99 QGRNIRVNHA 108
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E LA+AF+++G + K +I D RS+G+G++ E+A+ AL MN +
Sbjct: 12 LSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDGMNGKSV 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRTIRVD 79
>gi|409081762|gb|EKM82121.1| hypothetical protein AGABI1DRAFT_112242 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198598|gb|EKV48524.1| hypothetical protein AGABI2DRAFT_192114 [Agaricus bisporus var.
bisporus H97]
Length = 275
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D FS+FG+V K TI+ D +RS+G+G++ ST +EA + + ++N + L
Sbjct: 89 LSIRTVERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVDEAARCIQELNGVEL 148
Query: 61 DVRVIFVDY 69
+ R I VDY
Sbjct: 149 NGRRIRVDY 157
>gi|121705230|ref|XP_001270878.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
gi|119399024|gb|EAW09452.1| glycine-rich RNA-binding protein, putative [Aspergillus clavatus
NRRL 1]
Length = 133
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L F QFGQV +A ++ D NRS+G+G++ S++ +A KA+ MN
Sbjct: 9 LAWHTTDDALRQGFEQFGQVEEAIVVKDRDTNRSRGFGFVRFSSDSDADKAMDAMNNQEF 68
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 69 DGRTIRVD 76
>gi|406929710|gb|EKD65230.1| RNA-binding protein [uncultured bacterium]
Length = 95
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT E L FSQ G+V A I+D + KG+G++ +T EEAQKA+ +N L
Sbjct: 10 LSYGTTDEQLEQHFSQAGKVISAKAIVDRYSGQGKGFGFVEMATAEEAQKAIQQLNNSNL 69
Query: 61 DVRVIFVDYVRP 72
+ R I V+ RP
Sbjct: 70 NDRSIVVNEARP 81
>gi|409044525|gb|EKM54006.1| hypothetical protein PHACADRAFT_257571 [Phanerochaete carnosa
HHB-10118-sp]
Length = 155
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFSQFGQ+ + ++ D RS+G+G++T S+ EAQ A+ +N+ L
Sbjct: 10 LSWNTTDDSLRTAFSQFGQILDSIVMRDRDTGRSRGFGFVTFSSANEAQTAITSLNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIRVN 77
>gi|333381249|ref|ZP_08472931.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830219|gb|EGK02847.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
Length = 107
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S L D FS++G++T A +IMD RSKGYG++ + QKA+ ++N
Sbjct: 8 LSYSINDNDLKDLFSEYGEITSAKVIMDKATGRSKGYGFVELADNAAGQKAIEELNGAEY 67
Query: 61 DVRVIFVDYVRP 72
D R I V RP
Sbjct: 68 DGRTISVSEARP 79
>gi|357122488|ref|XP_003562947.1| PREDICTED: uncharacterized RNA-binding protein C25G10.01-like
[Brachypodium distachyon]
Length = 138
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AFS+FGQVT+A +I D S+G+G++ +T EEA + + M+ LD V
Sbjct: 51 TTTDGLREAFSKFGQVTEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWV 110
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQS 89
IF +Y + +QP QS
Sbjct: 111 IFAEYAKQRE--------AQQPPQS 127
>gi|255565552|ref|XP_002523766.1| dc50, putative [Ricinus communis]
gi|223536978|gb|EEF38615.1| dc50, putative [Ricinus communis]
Length = 210
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 48/73 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L +AF +FG + +A +++D RS+G+G++T ++ ++A+ +MN M L
Sbjct: 14 LSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIEEMNGMDL 73
Query: 61 DVRVIFVDYVRPN 73
D R I VD +P+
Sbjct: 74 DGRTITVDKAQPH 86
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S + L AFSQFG VT A ++M+ RSKG+G++ ++ EAQ+A+ MN L
Sbjct: 10 LPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|365153971|ref|ZP_09350405.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
gi|158605004|gb|EAT99377.3| 31 kDa ribonucleoprotein, (RNA-binding proteinRNP-T) (RNA-binding
protein 1/2/3) (AtRBP33) (RNA-binding proteincp31)
[Campylobacter concisus 13826]
gi|363650683|gb|EHL89770.1| hypothetical protein HMPREF1019_01088 [Campylobacter sp. 10_1_50]
Length = 81
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT+ L +AF+QFG+V +A I+ D +RSKG+G++ E QKA+ +N+ L
Sbjct: 8 LSYRTTEAELKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDALNEKEL 67
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 68 GGRTLRVNEARP 79
>gi|388511641|gb|AFK43882.1| unknown [Lotus japonicus]
Length = 211
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L DAF +FG++T+A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDL 73
Query: 61 DVRVIFVDYVRP 72
D R I VD +P
Sbjct: 74 DGRTITVDKAQP 85
>gi|351730017|ref|ZP_08947708.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 115
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T +L FS+FG VT A ++MD RSKG+G++ ++ E AQ A+ ++ M +D
Sbjct: 12 YSVTDSVLESNFSEFGNVTSAKVMMDRETGRSKGFGFVEMASAEVAQAAISALHGMSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|388492070|gb|AFK34101.1| unknown [Lotus japonicus]
Length = 211
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L DAF +FG++T+A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDL 73
Query: 61 DVRVIFVDYVRP 72
D R I VD +P
Sbjct: 74 DGRTITVDKTQP 85
>gi|381207415|ref|ZP_09914486.1| RNA-binding region RNP-1 (RNA recognition motif) [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 117
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S T+E L DAF QFG+V K +IIMD RSKG+G++ + EA+ A+ +N+ +
Sbjct: 34 LAYSVTEEQLRDAFGQFGEVDKVSIIMDRMTGRSKGFGFVEMQDDSEAEAAIRGLNEQPI 93
Query: 61 DVRVIFVD 68
+ R + V+
Sbjct: 94 NGRAVRVN 101
>gi|303315989|ref|XP_003067999.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
gi|240107675|gb|EER25854.1| Glycine-rich RNA-binding protein 2, mitochondrial precursor ,
putative [Coccidioides posadasii C735 delta SOWgp]
Length = 117
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L FS+FG + +A ++ D NRS+G+G++ ++E EA+ A+ +MN
Sbjct: 9 LAWHTTDETLRQGFSKFGSIEEAIVVKDRDTNRSRGFGFVRFASEGEAEAAMNEMNNQEF 68
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 69 DGRTIRVD 76
>gi|449438165|ref|XP_004136860.1| PREDICTED: uncharacterized protein LOC101215898 [Cucumis sativus]
gi|449478936|ref|XP_004155458.1| PREDICTED: uncharacterized protein LOC101227324 [Cucumis sativus]
Length = 211
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L +AF +FG + +A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKAMDEAIKAMNGMDL 73
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D R I VD +PN+ D
Sbjct: 74 DGRSITVDKAQPNQGSGRD 92
>gi|46139099|ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
Length = 127
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT E L FS+FG+VT + I+ D R++G+G++T STEE+A A+ +N+ L
Sbjct: 9 LSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDALNEQEL 68
Query: 61 DVRVIFVDY--VRP 72
D R I V+ RP
Sbjct: 69 DGRRIRVNVANARP 82
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S + L AF +FG VT A ++MD RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 SGRAIVVNEARP 81
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ LA+AFS++G ++K +IMD R +G+G++ E+A+ A+ MN L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSL 71
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 72 DGRTIRVN 79
>gi|358056531|dbj|GAA97500.1| hypothetical protein E5Q_04178 [Mixia osmundae IAM 14324]
Length = 287
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S +T + L D F++ G+V K ++ D RS+G+ ++T +E++A+KA+ D+N +
Sbjct: 56 LSVNTRERDLEDVFTRIGEVDKVVVVYDQRSERSRGFAFVTMRSEDDAEKAIADLNGQEI 115
Query: 61 DVRVIFVDY---VRPNR 74
D R + VDY RP+R
Sbjct: 116 DGRRVRVDYSLTTRPHR 132
>gi|388512901|gb|AFK44512.1| unknown [Medicago truncatula]
Length = 144
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF +FG+V A ++ D SKG+G++ +T E+A K + M+ L+ V
Sbjct: 62 TTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLEGWV 121
Query: 65 IFVDYVRP 72
IF +Y RP
Sbjct: 122 IFAEYARP 129
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ +E L F +FG++ II D RSKG+GY+ + E+A KAL N+ LL
Sbjct: 247 LSWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFTNAEDAAKALEAKNESLL 306
Query: 61 DVRVIFVDYVRPNRHYN 77
D R I VD+ P N
Sbjct: 307 DNRNIRVDFSTPRDKSN 323
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T++++ + F++ G V + D KG+GY+ + EEAQ A + +
Sbjct: 353 LSFDATEDVVREYFAEHGNVNSIRLPTDRDTGAPKGFGYVEMGSVEEAQAAFNALQGQDV 412
Query: 61 DVRVIFVDYVRP 72
R + +DY +P
Sbjct: 413 GGRPVRLDYAQP 424
>gi|402217291|gb|EJT97372.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731
SS1]
Length = 167
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T + L AFSQFGQV ++ D RS+G+G++T T +EAQ A+ +N+ L
Sbjct: 20 LSWNTNDDTLRSAFSQFGQVLDCIVMKDRESGRSRGFGFVTFGTSQEAQAAIDGLNEQDL 79
Query: 61 DVRVIFVDY--VRP 72
D R I V+ RP
Sbjct: 80 DGRRIRVNLANARP 93
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S + L AFSQFG VT A ++M+ RSKG+G++ ++ EAQ+A+ MN L
Sbjct: 10 LPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|346978360|gb|EGY21812.1| glycine-rich RNA-binding protein [Verticillium dahliae VdLs.17]
Length = 175
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT+E L F +FG V +A ++ D RS+G+G++ S +E+AQKA+ MN +
Sbjct: 9 LAWHTTEETLRSRFEEFGAVDEAVVVKDRDTGRSRGFGFVRYSQDEDAQKAIDAMNNVEF 68
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 69 DGRTIRVD 76
>gi|260787130|ref|XP_002588608.1| hypothetical protein BRAFLDRAFT_251348 [Branchiostoma floridae]
gi|229273773|gb|EEN44619.1| hypothetical protein BRAFLDRAFT_251348 [Branchiostoma floridae]
Length = 130
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T++ L AFS+FG VT+ +I D RS+G+G++ S EA A DM+ L
Sbjct: 7 LSWGTSEASLCQAFSRFGTVTECKVIRDHWTGRSRGFGFVKFSAPSEADVARKDMHFQHL 66
Query: 61 DVRVIFVDYVR 71
D R I VDY +
Sbjct: 67 DGRTIRVDYAK 77
>gi|332525684|ref|ZP_08401833.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
gi|332109243|gb|EGJ10166.1| RNA-binding region RNP-1 [Rubrivivax benzoatilyticus JA2]
Length = 145
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AF+QFG VT A ++MD RSKG+G++ ++ EAQ A+ MN L+ R + V+
Sbjct: 6 LQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAINGMNGQSLEGRAVVVNE 65
Query: 70 VRP 72
RP
Sbjct: 66 ARP 68
>gi|326514928|dbj|BAJ99825.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326517426|dbj|BAK00080.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 153
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AF++FG+V A +I D SKG+G++ T E+A K + M+ LD V
Sbjct: 59 TTTDGLREAFAKFGEVEHARVITDRVTGFSKGFGFVRYVTVEDAAKGIEGMDGEFLDGWV 118
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQS 89
IF +Y RP R QP QS
Sbjct: 119 IFAEYARP-RPPPQMGGATPQPQQS 142
>gi|164659141|ref|XP_001730695.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
gi|159104592|gb|EDP43481.1| hypothetical protein MGL_2149 [Malassezia globosa CBS 7966]
Length = 190
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT + LA AFS +GQ+T ++ D RS+G+G++T T++EA A++ +N+ L
Sbjct: 9 LSWSTTDDGLAQAFSPYGQLTDYIVMKDRDSGRSRGFGFVTFMTQQEADAAIMALNEQEL 68
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 69 DGRRIRVN 76
>gi|329960883|ref|ZP_08299162.1| hypothetical protein HMPREF9446_00723 [Bacteroides fluxus YIT
12057]
gi|328532169|gb|EGF58973.1| hypothetical protein HMPREF9446_00723 [Bacteroides fluxus YIT
12057]
Length = 101
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT L D FS++G+V+ A +I D RS+G+G++ S + AQKA+ ++N
Sbjct: 8 LNFSTTDADLNDLFSEYGEVSSARVITDRETGRSRGFGFVEMSDDTAAQKAIDELNGAEY 67
Query: 61 DVRVIFVDYVRP 72
D + I V+ RP
Sbjct: 68 DQKTISVNVARP 79
>gi|224060337|ref|XP_002300149.1| predicted protein [Populus trichocarpa]
gi|222847407|gb|EEE84954.1| predicted protein [Populus trichocarpa]
Length = 133
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S + L DAFS FG+VT+A +IMD RS+G+G++ + E A +AL M+ L
Sbjct: 43 LPWSADDQTLKDAFSGFGEVTEARVIMDRETGRSRGFGFVHYDSVENASEALSAMDGQNL 102
Query: 61 D---VRVIFVDYVRPNRHYN 77
VRV F + RP + YN
Sbjct: 103 GGRTVRVSFAEERRPPQSYN 122
>gi|449435011|ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 1
[Cucumis sativus]
gi|449435013|ref|XP_004135290.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 2
[Cucumis sativus]
Length = 89
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L + FS FG +++A +I D R KG+G++T + EA+KAL M+ ++D R+
Sbjct: 18 TTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIVDGRL 77
Query: 65 IFVDYVR 71
IFV++ +
Sbjct: 78 IFVEFAK 84
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ LA+AFS++G + K +IMD R +G+G++ E+A+ A+ MN L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGMNGQSL 71
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 72 DGRTIRVN 79
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ K +I D+ NRSKGYG++T E+A+KAL +N L
Sbjct: 259 LHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFEL 318
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 319 AGRPMKVGHV 328
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ K +I D+ NRSKGYG++T E+A+KAL +N L
Sbjct: 247 LHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFEL 306
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 307 AGRPMKVGHV 316
>gi|146328793|ref|YP_001209360.1| RNA recognition motif-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232263|gb|ABQ13241.1| RNA recognition motif protein [Dichelobacter nodosus VCS1703A]
Length = 95
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT++ L +AFSQFG V A+II D RSKG+G++ E A+KA+ +N L
Sbjct: 9 LSYRTTEDELRNAFSQFGDVQNASIIKDRDSGRSKGFGFVEMPDAEAAKKAIESLNDKDL 68
Query: 61 DVRVIFVDYVRP 72
R + ++ RP
Sbjct: 69 GGRNLKINEARP 80
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VS+ST ++ L +AFS++G+V A IIMD RS+G+G++T ++ EEA A+ ++ L
Sbjct: 49 VSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDL 108
Query: 61 DVRVIFVDYV--RP 72
R I V+Y RP
Sbjct: 109 HGRPIRVNYANERP 122
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ LA+AFS++G + K +IMD R +G+G++ E+A+ A+ MN L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAKDAMEGMNGQSL 71
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 72 DGRTIRVN 79
>gi|406997918|gb|EKE15908.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 93
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +STT+E L + FSQ G V A II D RSKG+G++ STEE AQKA+ +
Sbjct: 10 LPYSTTEESLGEHFSQAGAVESANIITDRMSGRSKGFGFVEMSTEEGAQKAIEMFHGKEF 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRTLTVNEARP 81
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L + FS+FG + +A ++ D NRS+G+G++ S++ EA AL MN
Sbjct: 11 LAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQEF 70
Query: 61 DVRVIFVD 68
D RVI VD
Sbjct: 71 DGRVIRVD 78
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ LA+AFS++G ++K +IMD R +G+G++ E+A+ A+ MN L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSL 71
Query: 61 DVRVIFV 67
D R I V
Sbjct: 72 DGRTIRV 78
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ LA+AFS++G ++K +IMD R +G+G++ E+A+ A+ MN L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSL 71
Query: 61 DVRVIFV 67
D R I V
Sbjct: 72 DGRTIRV 78
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ LA+AFS++G ++K +IMD R +G+G++ E+A+ A+ MN L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSL 71
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 72 DGRTIRVN 79
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ LA+AFS++G ++K +IMD R +G+G++ E+A+ A+ MN L
Sbjct: 12 LSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAMNGQSL 71
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 72 DGRTIRVN 79
>gi|392568994|gb|EIW62168.1| RNA-binding domain-containing protein, partial [Trametes
versicolor FP-101664 SS1]
Length = 211
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGK-NRSKGYGYMTSSTEEEAQKALVDMNKML 59
+S TT+ L D FS+FG+V K I+ D + +RS+G+G++T ST +EA + + ++N +
Sbjct: 14 LSIRTTERDLDDEFSRFGRVEKVVIVYDQRQSDRSRGFGFITMSTTDEAGRCIKELNGVE 73
Query: 60 LDVRVIFVDY 69
L+ R I VDY
Sbjct: 74 LNGRRIRVDY 83
>gi|226500552|ref|NP_001148723.1| ELAV-like protein 4 [Zea mays]
gi|195621654|gb|ACG32657.1| ELAV-like protein 4 [Zea mays]
Length = 127
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AFS+FGQV +A +I D S+G+G++ +T +EA +A+ M+ LD V
Sbjct: 45 TTSEGLKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIEGMDGKFLDGWV 104
Query: 65 IFVDYVR 71
IF +Y +
Sbjct: 105 IFAEYAK 111
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ E L F G+V +A++ MD RSKG+GY++ ST E A+KA+ +MN +
Sbjct: 398 LSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEMNGKEI 457
Query: 61 DVRVIFVDYVRP 72
D R + V+ P
Sbjct: 458 DGRAVNVNAATP 469
Score = 38.5 bits (88), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VSF+ ++ML + F + G + + D + KG+GY+ ++ E A+ A +N +
Sbjct: 497 VSFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKDI 556
Query: 61 DVRVIFVDYVRP 72
R I +D+ +P
Sbjct: 557 AGRNIRLDFSQP 568
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VS+ST ++ L +AFS++G+V A IIMD RS+G+G++T ++ EEA A+ ++ L
Sbjct: 49 VSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDL 108
Query: 61 DVRVIFVDYV--RP 72
R I V+Y RP
Sbjct: 109 HGRPIRVNYANERP 122
>gi|261351264|gb|ACX71299.1| RNA-binding protein RZ-1 [Capsicum annuum]
Length = 202
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L DAF +FG + A +++D RS+G+G++T + + A+ MN M L
Sbjct: 14 LSWSTSDRGLKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDDKRAMEDAIEAMNGMDL 73
Query: 61 DVRVIFVDYVRP 72
D R I VD +P
Sbjct: 74 DGRAITVDKAQP 85
>gi|388493798|gb|AFK34965.1| unknown [Medicago truncatula]
Length = 185
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF +FG+V + ++ D SKG+GY+ +T E+A K + M+ L+ +
Sbjct: 55 TTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGMDGKFLEGWI 114
Query: 65 IFVDYVRP 72
+F +Y RP
Sbjct: 115 VFAEYARP 122
>gi|336371226|gb|EGN99565.1| hypothetical protein SERLA73DRAFT_159820 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT + L +AFS++GQV + ++ D RS+G+G++T S+E+EA+ A+ +++ L
Sbjct: 10 LSWSTTDDTLREAFSEYGQVVDSIVMRDRETGRSRGFGFVTFSSEQEAEAAINSLHEQDL 69
Query: 61 DVRVIFVDY--VRP 72
D R I V+ RP
Sbjct: 70 DGRRIKVNLANARP 83
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VS+ST ++ L +AFS++G+V A IIMD RS+G+G++T ++ EEA A+ ++ L
Sbjct: 49 VSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQDL 108
Query: 61 DVRVIFVDYV--RP 72
R I V+Y RP
Sbjct: 109 HGRPIRVNYANERP 122
>gi|292490317|ref|YP_003525756.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
gi|291578912|gb|ADE13369.1| RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc4]
Length = 97
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T E L AF +G+V+ A +I+D NRSKG+G++ + +E+A+ A+ +MN L
Sbjct: 8 LSYQVTDEELRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMARQEDAETAIKEMNDSDL 67
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 68 KGRQIVVNQARP 79
>gi|121595278|ref|YP_987174.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|222111562|ref|YP_002553826.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|120607358|gb|ABM43098.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|221731006|gb|ACM33826.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 102
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S E L FSQFG VT A ++M+ RSKG+G++ ++ EAQ A+ +N +
Sbjct: 10 LAYSVRDESLHQQFSQFGSVTSAKVMMERDTGRSKGFGFVEMGSDSEAQDAINGLNGRSV 69
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 70 DGRALTVNVARP 81
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T L +AF ++G V +A IIMD RS+G+G++T ++ EEA A+ M+ L
Sbjct: 47 ISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDL 106
Query: 61 DVRVIFVDYV--RPNRHY 76
R + V+Y RP R +
Sbjct: 107 HGRRVRVNYATERPQRTF 124
>gi|224110196|ref|XP_002315444.1| predicted protein [Populus trichocarpa]
gi|222864484|gb|EEF01615.1| predicted protein [Populus trichocarpa]
Length = 311
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 226 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFVKYTTEEAASSALKEMNGKII 285
Query: 61 DVRVIFVDYVRPN 73
+ +I VD + N
Sbjct: 286 NGWMIVVDVAKSN 298
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L + FS+FG + +A ++ D NRS+G+G++ S++ EA AL MN
Sbjct: 11 LAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAMNNQEF 70
Query: 61 DVRVIFVD 68
D RVI VD
Sbjct: 71 DGRVIRVD 78
>gi|225423629|ref|XP_002274983.1| PREDICTED: glycine-rich RNA-binding protein 2 [Vitis vinifera]
gi|359473083|ref|XP_003631246.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Vitis vinifera]
gi|297738010|emb|CBI27211.3| unnamed protein product [Vitis vinifera]
gi|297738011|emb|CBI27212.3| unnamed protein product [Vitis vinifera]
Length = 140
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 46/74 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T+K L + FS+FGQ+ + ++ D R +GY ++ ++++ A AL +M+ L
Sbjct: 45 LSYATSKSSLQEEFSKFGQIVEVDVVKDKAAKRPRGYAFIQYTSQDHAMLALENMDHKYL 104
Query: 61 DVRVIFVDYVRPNR 74
D RV+ V+ +P +
Sbjct: 105 DGRVVCVELAKPGK 118
>gi|353235522|emb|CCA67534.1| related to glycine-rich RNA-binding protein [Piriformospora
indica DSM 11827]
Length = 236
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L +AF Q+G V + ++ D RS+G+G++T S+EEEA A+ +N+ L
Sbjct: 10 LSWNTTDDTLREAFRQYGNVVDSIVMRDRETGRSRGFGFVTYSSEEEASNAISGLNETSL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRQIKVN 77
>gi|375144786|ref|YP_005007227.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361058832|gb|AEV97823.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 102
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F + LA FSQ+GQV+ A +IMD RS+G+G++ S++EEA+KA+ ++ +
Sbjct: 8 LGFQVNDDDLAKLFSQYGQVSSAKVIMDRETGRSRGFGFVEMSSDEEARKAIKELEGKPV 67
Query: 61 DVRVIFVDYVRP 72
+ R + V RP
Sbjct: 68 EGRSLSVSEARP 79
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L D FS++GQ+++ +I D RS+G+G++T +EA+ A++ MN L
Sbjct: 12 LSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFENPDEAKDAMLAMNGKSL 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRQIRVD 79
>gi|357127016|ref|XP_003565182.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 109
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAFSQ G VT+ +I RSKGYG++ S+E EA AL M+ LL
Sbjct: 37 LSYDTNEIALKDAFSQHGTVTEVKVICHPVTGRSKGYGFVKFSSESEAAAALEKMSNELL 96
Query: 61 DVRVIFVDY 69
D R I V Y
Sbjct: 97 DGRNIRVHY 105
>gi|357457429|ref|XP_003598995.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355488043|gb|AES69246.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 447
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T ++ L+DAFS++GQV A IIMD RSKG+G++T +T EEA A+ ++ L
Sbjct: 51 ISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDL 110
Query: 61 DVRVIFVDYV--RPNRHYN 77
R + V++ RP ++
Sbjct: 111 YGRRVGVNFANERPRDGFD 129
>gi|297814870|ref|XP_002875318.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321156|gb|EFH51577.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 247
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L DAF ++G + +A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWSTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDL 73
Query: 61 DVRVIFVDYVRPN-----RHYNTDASLVR 84
D R I VD +P+ R ++ D S R
Sbjct: 74 DGRTITVDKAQPHQGGSGRDHDGDRSRDR 102
>gi|125558733|gb|EAZ04269.1| hypothetical protein OsI_26412 [Oryza sativa Indica Group]
Length = 133
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AFS+FGQV +A +I D S+G+G++ +T EEA + + M+ LD V
Sbjct: 46 TTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWV 105
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQ 88
IF +Y + +QPAQ
Sbjct: 106 IFAEYAKQRE--------AQQPAQ 121
>gi|115472673|ref|NP_001059935.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|28564803|dbj|BAC57733.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113611471|dbj|BAF21849.1| Os07g0549800 [Oryza sativa Japonica Group]
gi|125600644|gb|EAZ40220.1| hypothetical protein OsJ_24665 [Oryza sativa Japonica Group]
gi|215767980|dbj|BAH00209.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 133
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AFS+FGQV +A +I D S+G+G++ +T EEA + + M+ LD V
Sbjct: 46 TTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGMDGKFLDGWV 105
Query: 65 IFVDYVRPNRHYNTDASLVRQPAQ 88
IF +Y + +QPAQ
Sbjct: 106 IFAEYAKQRE--------AQQPAQ 121
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L D FS++GQ+++ +I D RS+G+G++T +EA+ A++ MN L
Sbjct: 12 LSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFDNPDEAKDAMLAMNGKSL 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRQIRVD 79
>gi|408398205|gb|EKJ77338.1| hypothetical protein FPSE_02416 [Fusarium pseudograminearum
CS3096]
Length = 128
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L FS+FG+VT + I+ D R++G+G++T STEE+A A+ +N+ L
Sbjct: 9 LSWNTTDDTLRQTFSEFGEVTDSIIMRDRETGRARGFGFVTFSTEEQANAAVDALNEQEL 68
Query: 61 DVRVIFVDY--VRP 72
D R I V+ RP
Sbjct: 69 DGRRIRVNVANARP 82
>gi|168988195|gb|ACA35266.1| nuclear transport family protein [Cucumis sativus]
Length = 565
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E+L AF ++G V A +I D +S+GYG+++ ST+ E + AL +N++ L
Sbjct: 32 LSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELEL 91
Query: 61 DVRVIFV 67
+ RVI V
Sbjct: 92 EGRVIRV 98
>gi|225463887|ref|XP_002264022.1| PREDICTED: uncharacterized protein LOC100256416 isoform 1 [Vitis
vinifera]
gi|359493015|ref|XP_003634493.1| PREDICTED: uncharacterized protein LOC100256416 isoform 2 [Vitis
vinifera]
Length = 207
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L +AF +FG + +A +++D RS+G+G+++ ++ + A+ +M+ M L
Sbjct: 14 LSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDL 73
Query: 61 DVRVIFVDYVRPN 73
D R I VD +PN
Sbjct: 74 DGRSITVDKAQPN 86
>gi|9757907|dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
Length = 112
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 45/67 (67%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L F+ FGQ+T++ +I D R KG+G++T +E++AQKAL +N +++ R+
Sbjct: 32 TTDQSLRQLFAPFGQITESRLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL 91
Query: 65 IFVDYVR 71
IFV+ +
Sbjct: 92 IFVETAK 98
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T L FS+FG V+ A ++MD RSKG+G++ + E AQ A+ ++ M +D
Sbjct: 12 YSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAISGLHGMSVDG 71
Query: 63 RVIFVDYVRPNRHYNTDA 80
R I V+ RP R +DA
Sbjct: 72 RTIVVNLARP-REERSDA 88
>gi|296088109|emb|CBI35498.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L +AF +FG + +A +++D RS+G+G+++ ++ + A+ +M+ M L
Sbjct: 14 LSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQAMEDAIKEMHGMDL 73
Query: 61 DVRVIFVDYVRPNR 74
D R I VD +PN+
Sbjct: 74 DGRSITVDKAQPNQ 87
>gi|212546539|ref|XP_002153423.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
gi|210064943|gb|EEA19038.1| glycine-rich RNA-binding protein, putative [Talaromyces marneffei
ATCC 18224]
Length = 135
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L F +FG + +A +I D NRS+G+G++ ST+ EA A+ MN
Sbjct: 9 LAWHTTDDTLRSGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFSTDAEADAAIEGMNNQDF 68
Query: 61 DVRVIFVDYVRPN 73
D RVI VD N
Sbjct: 69 DGRVIRVDRASNN 81
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L D F+++GQV +A II+D RS+G+G++T ++ EEA A+ M+ L
Sbjct: 41 LSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAITAMDGKTL 100
Query: 61 DVRVIFVDYV 70
D R I V++
Sbjct: 101 DGRNIRVNHA 110
>gi|326527061|dbj|BAK04472.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 139
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AFS+FGQVT A +I D S+G+G++ +T EEA + + M+ D V
Sbjct: 51 TTSDGLREAFSKFGQVTDARVITDRISGYSRGFGFVKYATVEEAAEGIKGMDGKFFDGWV 110
Query: 65 IFVDYVR------PNRHYNTDASLVRQPA 87
IF +Y + P + T +S + P+
Sbjct: 111 IFAEYAKQREAQQPPQSAGTQSSGYQYPS 139
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L D F+++GQV +A II+D RS+G+G++T ++ EEA A+ M+ L
Sbjct: 38 LSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAITAMDGKTL 97
Query: 61 DVRVIFVDYV 70
D R I V++
Sbjct: 98 DGRNIRVNHA 107
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T +E LA AF ++G + K +I D RS+G+G++ ++A+ AL MN L
Sbjct: 12 LSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAKDALEGMNGKTL 71
Query: 61 DVRVIFVDYV----RPNRHYNT 78
D R I VD R NR + +
Sbjct: 72 DGRAIRVDEAGKGGRSNRGFGS 93
>gi|302694499|ref|XP_003036928.1| hypothetical protein SCHCODRAFT_63824 [Schizophyllum commune H4-8]
gi|300110625|gb|EFJ02026.1| hypothetical protein SCHCODRAFT_63824 [Schizophyllum commune H4-8]
Length = 259
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L + FS+FG V K TI+ D RS+G+G++ ST EEA + + ++N + L
Sbjct: 84 LSIRTEERDLDEEFSRFGTVEKVTIVYDQRSGRSRGFGFIRMSTVEEATRCIQELNGIDL 143
Query: 61 DVRVIFVDY 69
+ R I VDY
Sbjct: 144 NGRNIRVDY 152
>gi|256423338|ref|YP_003123991.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256038246|gb|ACU61790.1| RNP-1 like RNA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 92
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G V+ A +I+D NRS+G+G++T + EA+KA+ +MN L+D + I
Sbjct: 15 EDLNNHFSRYGVVSSANVIIDKFTNRSRGFGFVTMPNDTEAEKAIQEMNGSLIDGKTIAA 74
Query: 68 DYVR-----PNRHYNT 78
R P R YN
Sbjct: 75 SQARPREEKPGRSYNN 90
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L R I V+
Sbjct: 19 LEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAITGMNGQPLGGRSIVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|312283439|dbj|BAJ34585.1| unnamed protein product [Thellungiella halophila]
Length = 259
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L DAF ++G + +A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWSTSDRGLRDAFEKYGHLLEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDL 73
Query: 61 DVRVIFVDYVRPN 73
D R I VD +P+
Sbjct: 74 DGRTITVDKAQPH 86
>gi|404403808|ref|ZP_10995392.1| RNP-1 like RNA-binding protein [Alistipes sp. JC136]
Length = 105
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+ E L + F+QFG+V A +I D RS+G+G++ +E+A+KA+ +N
Sbjct: 8 LSWGTSSEGLGNLFAQFGEVASANVITDRETGRSRGFGFVEMPDDEQARKAMEQLNGTNF 67
Query: 61 DVRVIFVDYVRP 72
+ + I V+ RP
Sbjct: 68 EGQTITVNEARP 79
>gi|356550257|ref|XP_003543504.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E L FS FG VT+A + +D R KG+G+++ +E EA+KA MN ++
Sbjct: 14 LSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIV 73
Query: 61 DVRVIFVD 68
+ R+I V+
Sbjct: 74 NGRLILVE 81
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T + L DAFS FG VT+ II+D RS+G+G++ ++ EEA+ AL +M+ L
Sbjct: 52 LAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGREL 111
Query: 61 DVRVIFVDY 69
R I VDY
Sbjct: 112 AGRQIRVDY 120
>gi|357144628|ref|XP_003573359.1| PREDICTED: nucleolin-like [Brachypodium distachyon]
Length = 153
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L +AF++FG+V A ++ D SKG+G++ ++ E+A K + M+ LD V
Sbjct: 59 TTTDGLREAFAKFGEVMHARVVTDRVTGFSKGFGFVRYASVEDASKGIEGMDGKFLDGWV 118
Query: 65 IFVDYVRP 72
IF +Y RP
Sbjct: 119 IFAEYARP 126
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L +AFSQ+G V +A +IMD RS+G+G+++ + EEA AL M+ L
Sbjct: 47 LSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQAMDGQDL 106
Query: 61 DVRVIFVDYVRPNR 74
R I V+Y R
Sbjct: 107 HGRRIRVNYATEKR 120
>gi|259486065|tpe|CBF83611.1| TPA: glycine-rich RNA-binding protein, putative (AFU_orthologue;
AFUA_3G08580) [Aspergillus nidulans FGSC A4]
Length = 128
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT ++L + FS++G + +A ++ D NRS+G+G++ ++E EA A+ MN
Sbjct: 9 LAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEF 68
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 69 DGRIIRVD 76
>gi|224128992|ref|XP_002328863.1| predicted protein [Populus trichocarpa]
gi|118482403|gb|ABK93124.1| unknown [Populus trichocarpa]
gi|222839293|gb|EEE77630.1| predicted protein [Populus trichocarpa]
Length = 131
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST + L DAFS FG+VT+A +I D RS+G+G+++ + E A +AL M+ L
Sbjct: 43 LAWSTDDQSLKDAFSGFGEVTEARVITDRDTGRSRGFGFVSYESTESASEALSAMDGQEL 102
Query: 61 DVRVIFVDYVRPNRH---YNTD 79
R I V Y R YN++
Sbjct: 103 GGRNIRVGYATDKRQPQPYNSN 124
>gi|116747535|ref|YP_844222.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
gi|116696599|gb|ABK15787.1| RNP-1 like RNA-binding protein [Syntrophobacter fumaroxidans
MPOB]
Length = 122
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+ E L + FSQ G V AT++ D RS+G+G++ ST+EE QKA+ ++N
Sbjct: 10 LSFQTSSEQLRELFSQVGTVESATVVEDRESGRSRGFGFVEMSTKEEGQKAIAELNGKDF 69
Query: 61 DVRVIFVDYVR 71
+ R + V+ +
Sbjct: 70 NGRPLTVNEAK 80
>gi|255568010|ref|XP_002524982.1| RNA binding protein, putative [Ricinus communis]
gi|223535726|gb|EEF37389.1| RNA binding protein, putative [Ricinus communis]
Length = 371
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 286 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAANAALKEMNGKII 345
Query: 61 DVRVIFVDYVR--PNRH 75
+ +I VD + P R+
Sbjct: 346 NGWMIVVDVAKTSPPRY 362
>gi|116782406|gb|ABK22494.1| unknown [Picea sitchensis]
Length = 178
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT++ L +AFS FG + +ATI+MD RS+G+ ++ + EEEA+ A+ M+ L
Sbjct: 89 LSYYTTEQSLRNAFSSFGNLVEATIVMDRVTKRSRGFAFLRYAYEEEAEAAIKGMHGKFL 148
Query: 61 DVRVIFVDY 69
D RVIFV+Y
Sbjct: 149 DGRVIFVEY 157
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T +E LA+AF ++G + K +I D RS+G+G++ + E+A+ A+ MN L
Sbjct: 12 LSFETNEESLAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAKDAMTAMNGKSL 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRAIRVD 79
>gi|357445711|ref|XP_003593133.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355482181|gb|AES63384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 491
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L DAF ++G++ +A +++D RS+G+G++T +E ++A+ MN + L
Sbjct: 236 LAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDL 295
Query: 61 DVRVIFVDYVRP 72
D R I VD +P
Sbjct: 296 DGRTITVDKAQP 307
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F T+EML F FG++ +IMD NRSKGYG++T E+A+KAL +N L
Sbjct: 372 LHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFEL 431
Query: 61 DVRVIFVDYV 70
R + V V
Sbjct: 432 AGRPMKVGNV 441
>gi|168034546|ref|XP_001769773.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T + L DAFS FG VT+ II+D RS+G+G++ ++ EEA+ AL +M+ L
Sbjct: 53 LAWATDENTLRDAFSSFGTVTEVKIILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGREL 112
Query: 61 DVRVIFVDY 69
R I VDY
Sbjct: 113 AGRQIRVDY 121
>gi|302810024|ref|XP_002986704.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
gi|300145592|gb|EFJ12267.1| hypothetical protein SELMODRAFT_182522 [Selaginella moellendorffii]
Length = 730
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T++E LA F Q+G+V + +I D NRSKGYGY+ + EEA +A+ +++ +
Sbjct: 232 LAYTTSEEELASLFGQYGEVVQVHLICDKETNRSKGYGYVGFTLPEEATRAMTELDNSIF 291
Query: 61 DVRVIFV 67
R++ V
Sbjct: 292 QGRLLHV 298
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
V+F T++ L FS FGQV K + N +G+ ++ T++EAQ A + L
Sbjct: 633 VAFEATRKDLKQLFSPFGQVKKVKLPKKFDGNH-RGFAFVEFVTKQEAQNAFEALGSSHL 691
Query: 61 DVRVIFVDYVR 71
R + +++ R
Sbjct: 692 YGRHLVLEWAR 702
>gi|67525063|ref|XP_660593.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
gi|40744384|gb|EAA63560.1| hypothetical protein AN2989.2 [Aspergillus nidulans FGSC A4]
Length = 118
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT ++L + FS++G + +A ++ D NRS+G+G++ ++E EA A+ MN
Sbjct: 9 LAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEF 68
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 69 DGRIIRVD 76
>gi|346223551|ref|ZP_08844693.1| RNP-1 like RNA-binding protein [Anaerophaga thermohalophila DSM
12881]
Length = 159
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S +TT + L D F+++G+V A +IMD SK +G++ EE AQKA+ D+N+ L
Sbjct: 64 LSAATTSDDLNDLFAEYGEVVSAKVIMDRDTGASKRFGFVEMKDEESAQKAIKDLNECLF 123
Query: 61 DVRVIFVDYVRP 72
D I V RP
Sbjct: 124 DNSPIVVKQARP 135
>gi|15231311|ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like [Arabidopsis thaliana]
gi|46931202|gb|AAT06405.1| At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis thaliana]
gi|332644581|gb|AEE78102.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT + L FS FGQ+ +A +I D R KG+G++T +E++A+KAL ++ ++D R+
Sbjct: 18 TTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRL 77
Query: 65 IFVDYVR 71
IFV+ +
Sbjct: 78 IFVEVAK 84
>gi|297830792|ref|XP_002883278.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297329118|gb|EFH59537.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 376
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 291 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAASAALKEMNGKII 350
Query: 61 DVRVIFVDYVR 71
+ +I VD +
Sbjct: 351 NGWMIVVDVAK 361
>gi|78185978|ref|YP_374021.1| RNA recognition motif-containing protein [Chlorobium luteolum DSM
273]
gi|78165880|gb|ABB22978.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
luteolum DSM 273]
Length = 99
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S +++ L DAFSQFGQV A IIMD RSKG+G++ S++E + A+ MN+
Sbjct: 19 YSVSEDDLRDAFSQFGQVDSANIIMDKFSGRSKGFGFVDMSSDEAGRAAIEAMNEQEFKG 78
Query: 63 RVIFVD 68
R I V+
Sbjct: 79 RTIKVN 84
>gi|333030558|ref|ZP_08458619.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
gi|332741155|gb|EGJ71637.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
Length = 104
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF+ E LA+ F +G VT A +I D NRSKG+G++ +E A KA+ ++N +
Sbjct: 8 LSFNVNDEGLAEIFEPYGAVTSARVIKDKFTNRSKGFGFVEMEDDEAATKAINELNGAEV 67
Query: 61 DVRVIFVDYVRP 72
D R I V RP
Sbjct: 68 DGRPIAVSEARP 79
>gi|356517261|ref|XP_003527307.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Glycine max]
Length = 145
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
T E L + F++FG+V A ++ D SKG+G++ +T E+A K + M+ LD V
Sbjct: 60 TNTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWV 119
Query: 65 IFVDYVRP 72
IF +Y RP
Sbjct: 120 IFAEYARP 127
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax
sp. CF316]
Length = 110
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|15982739|gb|AAL09710.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|19699180|gb|AAL90956.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
Length = 148
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T+ L DAF ++G + +A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDL 73
Query: 61 DVRVIFVDYVRPN 73
D R I VD +P+
Sbjct: 74 DGRTITVDKAQPH 86
>gi|357152879|ref|XP_003576265.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 165
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L AFS FG++ A II D RS+G+G++T +TEE Q A+ MN L
Sbjct: 11 LAWATDDHNLQSAFSNFGEILDAKIIQDRETGRSRGFGFVTFATEESMQAAIEGMNGKEL 70
Query: 61 DVRVIFVDYVRPNR 74
D R I V+ + R
Sbjct: 71 DGRSITVNQAQSRR 84
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E+L AF ++G V A +I D +S+GYG+++ ST+ E + AL +N++ L
Sbjct: 200 LSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELEL 259
Query: 61 DVRVIFV 67
+ RVI V
Sbjct: 260 EGRVIRV 266
>gi|189465920|ref|ZP_03014705.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
gi|189434184|gb|EDV03169.1| hypothetical protein BACINT_02283 [Bacteroides intestinalis DSM
17393]
Length = 128
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T + L + FSQ+G+VT A II D RS+G+G++ +EE QKA+ +N+
Sbjct: 8 LSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDTLNETEF 67
Query: 61 DVRVIFVDYVRP 72
+ + I V RP
Sbjct: 68 EGKNIAVSVARP 79
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
ST E L F+ FG VT A +I+ G R KG+G+++ S+ EEA+KA+ +M+ +L R
Sbjct: 312 STDDEHLRKIFAPFGTVTSAKVIVKGG--RRKGFGFVSFSSREEAKKAVEEMHGKMLSAR 369
Query: 64 VIFVDYVR 71
++V Y R
Sbjct: 370 PLYVSYAR 377
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV-D 68
L D F+ FG + ++ D +N KG+G++ T E A KA+ +MN L+ R +FV
Sbjct: 123 LYDLFAGFGTILSCKVVSD--ENGPKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQ 180
Query: 69 YVRPNR 74
+ RPN+
Sbjct: 181 FKRPNQ 186
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L + FSQ+G ++ I+ D +SKG+G++ +A++A+ ++N R
Sbjct: 210 TTDEYLLEIFSQYGPLSSVKIMTD-DSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRK 268
Query: 65 IFV 67
I+V
Sbjct: 269 IYV 271
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD---V 62
T+ ML + FS G + + D +RS GYGY+ E+A AL MN +L V
Sbjct: 31 TEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTMNFDVLHGKPV 90
Query: 63 RVIFV 67
R+++
Sbjct: 91 RIMWC 95
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AFSQFG V A ++M+ RSKG+G++ ++E EAQ A+ MN L R + V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQAL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AFSQFG V A ++M+ RSKG+G++ ++E EAQ A+ MN L R + V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQAL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|443895166|dbj|GAC72512.1| hypothetical protein PANT_7d00134 [Pseudozyma antarctica T-34]
Length = 301
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + LA AFS FGQ+T ++ D RS+G+G++T +T+ EA A+ +N+ L
Sbjct: 10 LSWNTTDDSLAHAFSAFGQLTDYIVMKDRETGRSRGFGFVTFATQGEADAAIAALNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIRVN 77
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S E L +F QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSVVVNEARP 81
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AFSQFG V A ++M+ RSKG+G++ ++E EAQ A+ MN L R + V+
Sbjct: 19 LEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ K +I D+ NRSKGYG++T E+A+KAL +N L
Sbjct: 152 LHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFEL 211
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 212 AGRPMKVGHV 221
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 152
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S E L +F QFG VT A ++M+ RSKG+G++ +++ EAQ A+ MN L
Sbjct: 10 LPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSVVVNEARP 81
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ K +I D+ NRSKGYG++T E+A+KAL +N L
Sbjct: 306 LHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFHDSEDAKKALEQLNGFEL 365
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 366 AGRPMKVGHV 375
>gi|255584774|ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
gi|223527096|gb|EEF29277.1| cold-inducible RNA binding protein, putative [Ricinus communis]
Length = 94
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT + L FS FG V +A +++D + KG+G++T +E +AQKAL MN ++
Sbjct: 14 LSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALKAMNGRIV 73
Query: 61 DVRVIFVDYVR 71
D R++FV+ +
Sbjct: 74 DGRLLFVEVAK 84
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S E L +F QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSVVVNEARP 81
>gi|225435044|ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|297746123|emb|CBI16179.3| unnamed protein product [Vitis vinifera]
Length = 112
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L + FS FG VT+A +I D R KG+G++ +E +A+KAL MN ++ R+
Sbjct: 36 TTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDAEKALKAMNGRIVRGRL 95
Query: 65 IFVDYVRPNR 74
IFV+ + R
Sbjct: 96 IFVEIAKTTR 105
>gi|168704267|ref|ZP_02736544.1| RNA-binding region RNP-1 [Gemmata obscuriglobus UQM 2246]
Length = 137
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T ML + F+ +G V A +IMD RSKG+G++ +++EAQ A+ M+ ++
Sbjct: 10 LSWGVTDAMLQEMFTPYGAVVSAQVIMDRDTGRSKGFGFVEMGSDQEAQAAISGMHGQVI 69
Query: 61 DVRVIFVDYVRP 72
+ R + V+ RP
Sbjct: 70 EGRPLTVNEARP 81
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S T + L FS+FG+VT A ++MD RSKG+ ++ ST AQ A+ +N +
Sbjct: 36 LPYSVTDDSLQSNFSEFGEVTSAKVMMDRDTGRSKGFAFVEMSTPAFAQAAIDGLNGQSV 95
Query: 61 DVRVIFVDYVRP 72
D R I V+ RP
Sbjct: 96 DGRSIVVNLARP 107
>gi|374384996|ref|ZP_09642507.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
gi|373227054|gb|EHP49375.1| hypothetical protein HMPREF9449_00893 [Odoribacter laneus YIT
12061]
Length = 100
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ L D F ++G+++ A +IMD RS+G+G++ ++ E QKA+ ++N++
Sbjct: 8 LSYAVNDSDLRDLFGEYGEISSAKVIMDRESGRSRGFGFVEMPSDTEGQKAIDELNQVEY 67
Query: 61 DVRVIFVDYVRP------NRHYN 77
D +VI V+ +P N +YN
Sbjct: 68 DGKVINVNVAKPRTDRPRNNNYN 90
>gi|393215487|gb|EJD00978.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 247
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S +T+ L + FS+FG+V K TI+ D +RS+G+G++ ++ E+A + + ++N + L
Sbjct: 41 LSIRSTERDLDEEFSRFGRVEKVTIVYDQRSDRSRGFGFIKLASVEDAARCIQELNGVEL 100
Query: 61 DVRVIFVDY 69
+ R I VDY
Sbjct: 101 NGRRIRVDY 109
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|34785785|gb|AAH57481.1| Cirbp protein [Danio rerio]
Length = 121
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT++ L +AFS++G + K +I D +RS+G+G++T E+A+ A+ MN +
Sbjct: 5 LSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQV 64
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 65 DGRMIRVD 72
>gi|325279880|ref|YP_004252422.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM
20712]
gi|324311689|gb|ADY32242.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM
20712]
Length = 99
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT L + FS++G+++ A II D RS+G+G++ + + E QKA+ ++N
Sbjct: 8 LSYGTTDADLNELFSEYGEISSAKIISDRETGRSRGFGFVEMTNDTEGQKAIDELNGAEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DHKVIAVSIARP 79
>gi|212550891|ref|YP_002309208.1| RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549129|dbj|BAG83797.1| putative RNA-binding protein RbpA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 98
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF + L + F +G V+ A +I+D +RSKGYG++ +EEA+KA+ ++N
Sbjct: 8 LSFRLNDDDLKNLFESYGTVSSARVIIDRQTSRSKGYGFVEMEDDEEARKAIAELNGSEF 67
Query: 61 DVRVIFVDYVRP 72
D R I V RP
Sbjct: 68 DERTISVSEARP 79
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T L +AF ++G V +A IIMD RS+G+G++T ++ EEA A+ ++ L
Sbjct: 47 ISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFVTYTSSEEASSAIQALDGQDL 106
Query: 61 DVRVIFVDYV--RPNRHY 76
R + V+Y RP R +
Sbjct: 107 HGRRVRVNYATERPQRTF 124
>gi|224130158|ref|XP_002328668.1| predicted protein [Populus trichocarpa]
gi|222838844|gb|EEE77195.1| predicted protein [Populus trichocarpa]
Length = 142
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T L +AF ++G V + IIMD RS+G+G++T ++ EEA A+ M+ L
Sbjct: 47 ISFQTDDNGLKEAFDKYGNVVEGIIIMDRDTGRSRGFGFVTYTSSEEASSAIQAMDGQDL 106
Query: 61 DVRVIFVDYV--RPNRHY 76
R + V+Y RP R +
Sbjct: 107 HGRRVRVNYATERPQRTF 124
>gi|319902685|ref|YP_004162413.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
gi|319417716|gb|ADV44827.1| RNP-1 like RNA-binding protein [Bacteroides helcogenes P 36-108]
Length = 102
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT L D FS++G+V+ A +I D RS+G+ ++ +E AQKA+ ++N
Sbjct: 8 LNFSTTDADLNDLFSEYGEVSSARVITDRETGRSRGFAFVEMPDDEAAQKAIDELNGAEY 67
Query: 61 DVRVIFVDYVRP 72
D + I V+ RP
Sbjct: 68 DNKTISVNVARP 79
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 132
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ E L +F QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSITVNEARP 81
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT++ L +AFS++G + K +I D +RS+G+G++T E+A+ A+ MN +
Sbjct: 12 LSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGKQV 71
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 72 DGRMIRVD 79
>gi|357126492|ref|XP_003564921.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 156
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L +AFS FG+V +A +I D RS+G+G++ S EE+A+KA M+ L
Sbjct: 44 LSWGTNDGSLKEAFSSFGEVYEARVITDRETGRSRGFGFVEFSNEEDAKKAASSMDGQEL 103
Query: 61 DVRVIFVDYV--RP 72
D R + V++ RP
Sbjct: 104 DGRSVRVNFANERP 117
>gi|328767903|gb|EGF77951.1| hypothetical protein BATDEDRAFT_27077 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T LADAFSQFG+V + ++ D RS+G+G++T S+ E A A+ MN L
Sbjct: 18 LSWGTDNNSLADAFSQFGEVVDSIVLKDRETGRSRGFGFVTFSSPESASAAVDAMNGQDL 77
Query: 61 DVRVIFVDYVRPNRHYNTDA 80
+ R I V+ Y A
Sbjct: 78 NGRNIRVNLANERPAYGGGA 97
>gi|392593259|gb|EIW82584.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 116
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFS FG V + ++ D RS+G+G++T S+ +EA+ A+ +N L
Sbjct: 11 LSWNTTDDTLRQAFSTFGNVVDSVVMRDRDTGRSRGFGFVTYSSTQEAESAISGLNDQDL 70
Query: 61 DVRVIFVDYVRP 72
D R I V+ P
Sbjct: 71 DGRRIKVNIANP 82
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AFSQFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L R + V+
Sbjct: 19 LEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQGMNGQPLGGRSLVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AFSQFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L R + V+
Sbjct: 19 LEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQGMNGQPLGGRSLVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T +E LA AF ++G + K +I D RS+G+G++ ++A+ AL MN L
Sbjct: 12 LSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAKDALEGMNGKTL 71
Query: 61 DVRVIFVDYV----RPNRHYNT 78
D R I VD R NR + +
Sbjct: 72 DGRAIRVDEAGKGGRSNRGFGS 93
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ + EAQ A+ MN L
Sbjct: 10 LPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|18402803|ref|NP_566672.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20466724|gb|AAM20679.1| unknown protein [Arabidopsis thaliana]
gi|21536799|gb|AAM61131.1| unknown [Arabidopsis thaliana]
gi|25084257|gb|AAN72206.1| unknown protein [Arabidopsis thaliana]
gi|332642921|gb|AEE76442.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 374
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN ++
Sbjct: 289 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKII 348
Query: 61 DVRVIFVDYVR 71
+ +I VD +
Sbjct: 349 NGWMIVVDVAK 359
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L D F+++GQV +A II+D RS+G+G++T ++ EEA A+ ++ L
Sbjct: 37 ISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTL 96
Query: 61 DVRVIFVDYV 70
D R I V++
Sbjct: 97 DGRSIRVNHA 106
>gi|423302507|ref|ZP_17280529.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
gi|408470383|gb|EKJ88917.1| hypothetical protein HMPREF1057_03670 [Bacteroides finegoldii
CL09T03C10]
Length = 99
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L + F++FG+V+ A +IMD +S+G+ ++ +++EE QKA+ ++N +
Sbjct: 8 LSYRTNDADLTNLFAEFGEVSSAKVIMDRETGKSRGFAFVEMTSDEEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVISVSVARP 79
>gi|195155759|ref|XP_002018768.1| GL25979 [Drosophila persimilis]
gi|194114921|gb|EDW36964.1| GL25979 [Drosophila persimilis]
Length = 289
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F T+EML F FG++ +IMD NRSKGYG++T E+A+KAL +N L
Sbjct: 36 LHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYHNAEDAKKALEQLNGFEL 95
Query: 61 DVRVIFVDYVRPNRHYNT 78
R + V V NT
Sbjct: 96 AGRPMKVGNVTERLDMNT 113
>gi|115384864|ref|XP_001208979.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196671|gb|EAU38371.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 157
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L F +FG V A ++ D RS+G+G++T ++ +EA AL ++N
Sbjct: 36 LAWHTTDESLRAGFEKFGTVDNAIVVKDRDTGRSRGFGFVTFTSPQEADAALNELNNQEF 95
Query: 61 DVRVIFVDYV 70
D R+I VD+
Sbjct: 96 DGRIIRVDFA 105
>gi|1395193|dbj|BAA12064.1| RNA-binding protein RZ-1 [Nicotiana sylvestris]
gi|1435062|dbj|BAA06012.1| RNA binding protein RZ-1 [Nicotiana sylvestris]
Length = 209
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L DAF +FG + A +++D RS+G+G++T + + A+ MN + L
Sbjct: 13 LSWSTSDRGLKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDEKRAMEDAIEAMNGVDL 72
Query: 61 DVRVIFVDYVRPNR 74
D R I VD +P++
Sbjct: 73 DGRDITVDKAQPDK 86
>gi|423225541|ref|ZP_17212008.1| hypothetical protein HMPREF1062_04194 [Bacteroides
cellulosilyticus CL02T12C19]
gi|392632469|gb|EIY26429.1| hypothetical protein HMPREF1062_04194 [Bacteroides
cellulosilyticus CL02T12C19]
Length = 129
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T + L + FSQ+G+VT A II D RS+G+G++ +EE QKA+ +N+
Sbjct: 8 LSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDALNETEF 67
Query: 61 DVRVIFVDYVRP 72
+ + I + RP
Sbjct: 68 EGKNIAISVARP 79
>gi|224539725|ref|ZP_03680264.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518648|gb|EEF87753.1| hypothetical protein BACCELL_04634 [Bacteroides cellulosilyticus
DSM 14838]
Length = 130
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T + L + FSQ+G+VT A II D RS+G+G++ +EE QKA+ +N+
Sbjct: 8 LSWNTNSDSLQELFSQYGEVTSAYIINDRETGRSRGFGFVEMPNDEEGQKAIDALNETEF 67
Query: 61 DVRVIFVDYVRP 72
+ + I + RP
Sbjct: 68 EGKNIAISVARP 79
>gi|242045928|ref|XP_002460835.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
gi|241924212|gb|EER97356.1| hypothetical protein SORBIDRAFT_02g035890 [Sorghum bicolor]
Length = 131
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT L +AFS+FGQV +A +I D S+G+G++ +T +EA +A+ M+ LD V
Sbjct: 47 TTSNGLKEAFSKFGQVIEARVITDRISGYSRGFGFVKYATVQEAGEAIKGMDGKFLDGWV 106
Query: 65 IFVDYVR 71
IF +Y +
Sbjct: 107 IFAEYAK 113
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F+ +G+VT A I+ D NRSKG+G++ +T+EEA+ A+ +N +
Sbjct: 8 LSWNLKDQDLQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEALNGTEV 67
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
D R I V+ RP N+
Sbjct: 68 DGRNIVVNESRPKEGGNSGGG 88
>gi|242823058|ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712935|gb|EED12360.1| glycine-rich RNA-binding protein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 134
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L F +FG + +A +I D NRS+G+G++ +T+ EA A+ MN
Sbjct: 9 LAWHTTDDTLRQGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFATDAEADAAIDGMNNQEF 68
Query: 61 DVRVIFVDYVRPN 73
D RVI VD N
Sbjct: 69 DGRVIRVDRASNN 81
>gi|242046266|ref|XP_002461004.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
gi|241924381|gb|EER97525.1| hypothetical protein SORBIDRAFT_02g039025 [Sorghum bicolor]
Length = 83
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E D FS FG V +A ++ D R KG+G++ S++ EA+KA+ M+ +L
Sbjct: 13 LSFYTTEEEFKDVFSSFGTVEEARLMRDQQTGRIKGFGFVKYSSQAEAEKAVKAMDGRIL 72
Query: 61 DVRVIFVD 68
R+IFV+
Sbjct: 73 RGRLIFVE 80
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L D F+++GQV +A II+D RS+G+G++T ++ EEA A+ ++ L
Sbjct: 37 ISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTL 96
Query: 61 DVRVIFVDYV 70
D R I V++
Sbjct: 97 DGRSIRVNHA 106
>gi|15231557|ref|NP_189273.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|15983477|gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|9294301|dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana]
gi|15451066|gb|AAK96804.1| Unknown protein [Arabidopsis thaliana]
gi|18377412|gb|AAL66872.1| unknown protein [Arabidopsis thaliana]
gi|62320797|dbj|BAD93728.1| RNA-binding protein [Arabidopsis thaliana]
gi|110742443|dbj|BAE99140.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332643635|gb|AEE77156.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 245
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T+ L DAF ++G + +A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDL 73
Query: 61 DVRVIFVDYVRPN 73
D R I VD +P+
Sbjct: 74 DGRTITVDKAQPH 86
>gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L++AFSQ+G+V ++ +I D RS+G+G++T E+ + A+V MN L
Sbjct: 15 LAWATTDQSLSEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDEKSMKDAIVGMNGQTL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|388858327|emb|CCF48115.1| related to glycine-rich RNA-binding protein [Ustilago hordei]
Length = 193
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + LA AFS +GQ+T ++ D RS+G+G++T +T+ EA A+ +N+ L
Sbjct: 10 LSWNTTDDSLAHAFSAYGQLTDYIVMKDRETGRSRGFGFVTFATQGEADAAIAALNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIRVN 77
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L D F+++G+V +A II+D RS+G+G++T ++ EEA A+ M+ L
Sbjct: 37 LSYGTDDHSLRDEFAKYGEVIEARIILDRESGRSRGFGFVTYTSSEEASAAITAMDGKTL 96
Query: 61 DVRVIFVDYV 70
D R I V++
Sbjct: 97 DGRSIRVNHA 106
>gi|160899081|ref|YP_001564663.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333914782|ref|YP_004488514.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|160364665|gb|ABX36278.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|333744982|gb|AEF90159.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 115
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T L F++FG V A ++MD RSKG+G++ ++ E AQ A+ ++ M +D
Sbjct: 12 YSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|296422065|ref|XP_002840583.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636802|emb|CAZ84774.1| unnamed protein product [Tuber melanosporum]
Length = 559
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F QFG++ ++ D RSKG+GY+ +T E A+KAL +M +
Sbjct: 309 LSWNVDEGWLRNEFEQFGEIAAVRVVTDRESGRSKGFGYVEYTTNEAAKKALEEMKGKDI 368
Query: 61 DVRVIFVDYVRP 72
D R I VD+ P
Sbjct: 369 DGRTINVDFSAP 380
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF ++++ F FG + I D + KG+ Y+ + A+KA+ +MN L+
Sbjct: 409 LSFEADEQIVQTEFEGFGNIVGLRIPTDPESGQPKGFCYIQYDRVDSARKAVEEMNGALV 468
Query: 61 DVRVIFVDYVRP 72
R I D+ P
Sbjct: 469 AGRAIRTDFSTP 480
>gi|125548231|gb|EAY94053.1| hypothetical protein OsI_15830 [Oryza sativa Indica Group]
Length = 113
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
T++ LA+AFSQ+GQV +ATI+ D NR KG+G++ ++EE A KA +MN
Sbjct: 49 TEDSLAEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMN 99
>gi|293336981|ref|NP_001169115.1| uncharacterized protein LOC100382959 [Zea mays]
gi|223975005|gb|ACN31690.1| unknown [Zea mays]
gi|414887554|tpg|DAA63568.1| TPA: hypothetical protein ZEAMMB73_633512 [Zea mays]
Length = 103
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E D FS FG V +A ++ D R KG+G++ S++ EA+KA+ M+ +L
Sbjct: 28 LSFYTTEEEFKDIFSPFGTVEEARLMRDHQTGRMKGFGFVKYSSQAEAEKAVKAMDGKIL 87
Query: 61 DVRVIFVDYVRPN 73
R+IFV+ + +
Sbjct: 88 RGRLIFVEMAKGH 100
>gi|388511713|gb|AFK43918.1| unknown [Lotus japonicus]
Length = 141
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L + F++FG+V A ++ D SKG+G++ +T EEA K + M+ LD V
Sbjct: 55 TTTEKLREEFAKFGEVVHARVVTDRVSGYSKGFGFVKYATIEEASKGIQGMDGKFLDGWV 114
Query: 65 IFVDYVR 71
IF +Y +
Sbjct: 115 IFAEYAK 121
>gi|62955567|ref|NP_001017797.1| cold inducible RNA binding protein [Danio rerio]
gi|62202782|gb|AAH93299.1| Zgc:112425 [Danio rerio]
gi|63100518|gb|AAH95030.1| Zgc:112425 [Danio rerio]
gi|182889498|gb|AAI65256.1| Zgc:112425 protein [Danio rerio]
Length = 185
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT++ L DAFS++G +T + + NRS+G+G++T ++A+ AL MN +
Sbjct: 12 LSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGMNGKSV 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRTIRVD 79
>gi|333377706|ref|ZP_08469439.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
gi|332883726|gb|EGK04006.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
Length = 106
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S L D F+++G+++ A +IMD RSKGYG++ QKA+ ++N
Sbjct: 8 LSYSINDNDLRDLFNEYGEISSAKVIMDKATGRSKGYGFVELEDNAAGQKAIEELNGAEY 67
Query: 61 DVRVIFVDYVRP 72
D R I V RP
Sbjct: 68 DGRTISVSEARP 79
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L D F+++GQV +A II+D RS+G+G++T ++ EEA A+ ++ L
Sbjct: 37 ISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAITALDGKTL 96
Query: 61 DVRVIFVDYV 70
D R I V++
Sbjct: 97 DGRSIRVNHA 106
>gi|317479260|ref|ZP_07938395.1| RNA recognition domain-containing protein [Bacteroides sp.
4_1_36]
gi|316904548|gb|EFV26367.1| RNA recognition domain-containing protein [Bacteroides sp.
4_1_36]
Length = 101
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT L D FS++G+V+ A II D RS+G+G++ + QKA+ ++N
Sbjct: 8 LNFSTTDADLNDLFSEYGEVSSARIITDRETRRSRGFGFVEMPDDAAGQKAIDELNGAEF 67
Query: 61 DVRVIFVDYVRP 72
D + I V+ RP
Sbjct: 68 DHKQISVNVARP 79
>gi|319762031|ref|YP_004125968.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330826150|ref|YP_004389453.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317116592|gb|ADU99080.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329311522|gb|AEB85937.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 102
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S E L FSQFG VT A ++M+ RSKG+G++ ++ EAQ+A+ ++ +
Sbjct: 10 LAYSVRDESLVQQFSQFGAVTSAKVMMERDTGRSKGFGFVEMASGAEAQEAINGLHGKSV 69
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 70 DGRALTVNVARP 81
>gi|145233965|ref|XP_001400355.1| glycine-rich RNA-binding protein 2 [Aspergillus niger CBS 513.88]
gi|134057294|emb|CAK37908.1| unnamed protein product [Aspergillus niger]
gi|350635078|gb|EHA23440.1| hypothetical protein ASPNIDRAFT_197860 [Aspergillus niger ATCC
1015]
Length = 116
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L + FSQ+G + +A ++ D +RS+G+G++ +++ EA A+ MN
Sbjct: 9 LAWHTTDETLREGFSQYGTIEEAIVVKDHDTHRSRGFGFVRFASDVEADAAMNAMNNQEF 68
Query: 61 DVRVIFVDYVRPNR 74
D RVI VD +R
Sbjct: 69 DGRVIRVDKASESR 82
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AFSQFG V+ A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSVVVNEARP 81
>gi|255573326|ref|XP_002527590.1| conserved hypothetical protein [Ricinus communis]
gi|223533029|gb|EEF34792.1| conserved hypothetical protein [Ricinus communis]
Length = 66
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
+SF TT+E L +AF FG++ + ++MD NR +G+ ++ +TEEE+QKA+ M+
Sbjct: 7 ISFRTTEESLRNAFQNFGKLVEVNLVMDKIANRPRGFAFLRYATEEESQKAIEGMH 62
>gi|336386026|gb|EGO27172.1| hypothetical protein SERLADRAFT_434943 [Serpula lacrymans var.
lacrymans S7.9]
Length = 284
Score = 55.1 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L + FS+FG+V K TI+ D +RS+G+G++ ST EEA + + ++N + L
Sbjct: 90 LSIRTQERDLDEEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSTVEEATRCIQELNGVDL 149
Query: 61 DVRVIFVDYVRPNR 74
+ R I VDY +R
Sbjct: 150 NGRRIRVDYSVTDR 163
>gi|160888973|ref|ZP_02069976.1| hypothetical protein BACUNI_01393 [Bacteroides uniformis ATCC
8492]
gi|270293903|ref|ZP_06200105.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|423305982|ref|ZP_17283981.1| hypothetical protein HMPREF1072_02921 [Bacteroides uniformis
CL03T00C23]
gi|423309474|ref|ZP_17287464.1| hypothetical protein HMPREF1073_02214 [Bacteroides uniformis
CL03T12C37]
gi|156861440|gb|EDO54871.1| hypothetical protein BACUNI_01393 [Bacteroides uniformis ATCC
8492]
gi|270275370|gb|EFA21230.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|392679826|gb|EIY73203.1| hypothetical protein HMPREF1072_02921 [Bacteroides uniformis
CL03T00C23]
gi|392684514|gb|EIY77839.1| hypothetical protein HMPREF1073_02214 [Bacteroides uniformis
CL03T12C37]
Length = 101
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT L D FS++G+V+ A II D RS+G+G++ + QKA+ ++N
Sbjct: 8 LNFSTTDADLNDLFSEYGEVSSARIITDRETRRSRGFGFVEMPDDAAGQKAIDELNGAEF 67
Query: 61 DVRVIFVDYVRP 72
D + I V+ RP
Sbjct: 68 DHKQISVNVARP 79
>gi|409197867|ref|ZP_11226530.1| RNP-1 like RNA-binding protein [Marinilabilia salmonicolor JCM
21150]
Length = 99
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S +TT E L D F+++G+V A +IMD SK +G++ ++ AQKA+ D+N+ L
Sbjct: 8 LSDATTSEDLNDLFAEYGEVVSAKVIMDRETGSSKRFGFVEMKEDDAAQKAIKDLNECLF 67
Query: 61 DVRVIFVDYVRP 72
D I V RP
Sbjct: 68 DNSPIVVKKARP 79
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML +AF + G V A ++ D RS+GYG++ ST EE +AL +N M +
Sbjct: 214 LSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEM 273
Query: 61 DVRVIFVD 68
+ R + V+
Sbjct: 274 EGREMRVN 281
>gi|59802525|gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
Length = 163
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + T E L F +G V A +IMD RSKG+G++ ++++EAQ A+ MN +
Sbjct: 71 LGYGVTDEQLRGMFGPYGSVQTAQVIMDRDTGRSKGFGFVEMNSDQEAQAAIAGMNGQMS 130
Query: 61 DVRVIFVDYVRP 72
+ R + V+ +P
Sbjct: 131 EGRALTVNEAKP 142
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ FS TK + AF+Q G+VT I+ D +S+G+G++T T E+AQ+A+ +MN ++
Sbjct: 10 LPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIENMNGAMM 69
Query: 61 DVRVIFVD 68
D R + V+
Sbjct: 70 DGRPLRVN 77
>gi|395325784|gb|EJF58201.1| hypothetical protein DICSQDRAFT_67439, partial [Dichomitus
squalens LYAD-421 SS1]
Length = 94
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L +AFS +GQ+ + ++ D RS+G+G++T S+ EAQ A+ +N+ L
Sbjct: 2 LSWNTTDDNLRNAFSTYGQILDSIVMRDRDTGRSRGFGFVTFSSGSEAQSAIASLNEQEL 61
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 62 DGRRIKVN 69
>gi|357144334|ref|XP_003573255.1| PREDICTED: uncharacterized protein LOC100824407 [Brachypodium
distachyon]
Length = 226
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT L DAF +FG+VT+ +++D RS+G+G++T ++ ++A+ MN + L
Sbjct: 14 LSWSTTDVDLKDAFGKFGRVTETKVVLDKYSGRSRGFGFVTFDDKKAMEEAVEAMNGIDL 73
Query: 61 DVRVIFVDYVRP 72
D R I V+ +P
Sbjct: 74 DGRNITVERAQP 85
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSVVVNEARP 81
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML +AF + G V A ++ D RS+GYG++ ST EE +AL +N M +
Sbjct: 214 LSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEM 273
Query: 61 DVRVIFVD 68
+ R + V+
Sbjct: 274 EGREMRVN 281
>gi|21388662|dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 155
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + + +AFS FG+VT+ II D RS+G+G++T +T+++A+ AL ++ L
Sbjct: 49 LAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQALDGRDL 108
Query: 61 DVRVIFVDYV 70
R I V+Y
Sbjct: 109 AGRTIRVNYA 118
>gi|170098488|ref|XP_001880463.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644901|gb|EDR09150.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 154
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFS+FGQV + ++ D RS+G+G++T S+ +EA A+ +N+ L
Sbjct: 10 LSWNTTDDTLRQAFSEFGQVLDSIVMRDRDTGRSRGFGFVTFSSGQEADAAIGGLNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIKVN 77
>gi|255691172|ref|ZP_05414847.1| RNA-binding protein [Bacteroides finegoldii DSM 17565]
gi|260623075|gb|EEX45946.1| hypothetical protein BACFIN_06178 [Bacteroides finegoldii DSM
17565]
Length = 99
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L + F++FG+V+ A +IMD S+G+ ++ +++EE QKA+ ++N +
Sbjct: 8 LSYRTNDADLTNLFAEFGEVSSAKVIMDRETGNSRGFAFVEMTSDEEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVISVSVARP 79
>gi|119358437|ref|YP_913081.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119355786|gb|ABL66657.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + T++ L DAFSQFGQV A II D RSKG+G++ ++EA++A+ MN L
Sbjct: 8 LPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDMPHDDEAREAIESMNDKDL 67
Query: 61 DVRVIFV 67
R I V
Sbjct: 68 KGRTIKV 74
>gi|406944721|gb|EKD76419.1| hypothetical protein ACD_43C00118G0001 [uncultured bacterium]
Length = 84
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F +T + L +AF Q G V A IIMD RS+G+G++ ST EEAQ A+ + L
Sbjct: 10 IAFKSTDDTLREAFMQAGNVVSAKIIMDKMTGRSRGFGFVEMSTPEEAQAAIQMWDGKEL 69
Query: 61 DVRVIFVDYVRP 72
D R I V +P
Sbjct: 70 DGRRIAVKEAQP 81
>gi|168016725|ref|XP_001760899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687908|gb|EDQ74288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 155
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + + +AFS FG+VT+ II D RS+G+G++T +T+++A+ AL ++ L
Sbjct: 49 LAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQALDGRDL 108
Query: 61 DVRVIFVDYV 70
R I V+Y
Sbjct: 109 AGRTIRVNYA 118
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S E L AF++FG + +A ++ D+ +RS+GYG++T +E+A+ AL MN L
Sbjct: 200 LSSEVNDEALKKAFTKFGSLKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSMNGEWL 259
Query: 61 DVRVIFVDYVRPNRH 75
R I ++ H
Sbjct: 260 GGRAIRCNWASHKSH 274
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L AF QFG V A ++M+ RSKG+G++ ++E EAQ A+ MN L R + V+
Sbjct: 19 LEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQGMNGQPLGGRSLVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|348553582|ref|XP_003462605.1| PREDICTED: putative RNA-binding protein 3-like [Cavia porcellus]
Length = 159
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FST ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFSTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|392592864|gb|EIW82190.1| RNA-binding domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 306
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D FS+FG+V K TI+ D +RS+G+G++ S EEA + + ++N + L
Sbjct: 91 LSIRTQERDLDDEFSRFGRVEKVTIVYDQRSDRSRGFGFIKMSAVEEATRCIQELNGVEL 150
Query: 61 DVRVIFVDYVRPNR 74
+ R I VDY +R
Sbjct: 151 NGRRIRVDYSVTDR 164
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S EML AFSQFG+V A +++D RS+G+ ++T ++ + A+KA ++ L
Sbjct: 97 LAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMASPDAAEKARRGLDGTEL 156
Query: 61 DVRVIFVDYVRP 72
R I V++ +P
Sbjct: 157 AGRAIRVNFPQP 168
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S ML D F +FG V A ++MD RS+G+ ++ ST EEA +A+ +++ +
Sbjct: 211 LPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMANLDGEEI 270
Query: 61 DVRVIFVD 68
R I V+
Sbjct: 271 GGRTIRVN 278
>gi|301310455|ref|ZP_07216394.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|423336704|ref|ZP_17314451.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
gi|300832029|gb|EFK62660.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 20_3]
gi|409240584|gb|EKN33362.1| hypothetical protein HMPREF1059_00403 [Parabacteroides distasonis
CL09T03C24]
Length = 123
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + E L F+ +G++T A +IMD RS+G+G++ S +E A+KA+ ++N+
Sbjct: 8 LSYNISDEDLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASY 67
Query: 61 DVRVIFVDYVRP 72
D +VI + RP
Sbjct: 68 DGKVINITEARP 79
>gi|449507141|ref|XP_004162944.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like [Cucumis
sativus]
Length = 175
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
+SF TT+E L +AF FGQ+ + ++MD NR +G+ ++ ++EEE+QKA+ M+
Sbjct: 96 LSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMH 151
>gi|358367775|dbj|GAA84393.1| glycine-rich RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 117
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L + FSQ+G + +A ++ D +RS+G+G++ +++ EA A+ MN
Sbjct: 9 LAWHTTDDTLREGFSQYGTIEEAIVVKDHDTHRSRGFGFVRFASDAEADAAMNAMNNQEF 68
Query: 61 DVRVIFVDYVRPNR 74
D RVI VD +R
Sbjct: 69 DGRVIRVDKASESR 82
>gi|449439247|ref|XP_004137398.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like-B-like
[Cucumis sativus]
Length = 170
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
+SF TT+E L +AF FGQ+ + ++MD NR +G+ ++ ++EEE+QKA+ M+
Sbjct: 96 LSFRTTEESLRNAFKSFGQLVEVNLVMDRLANRPRGFAFLRYASEEESQKAIEGMH 151
>gi|375145012|ref|YP_005007453.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361059058|gb|AEV98049.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 105
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ E L D F+ +G++T A IIMD +S+G+G++ + EA+KA+ ++++ ++
Sbjct: 8 LGFNVQDEDLKDFFAPYGEITSAKIIMDRETGKSRGFGFVEMPNDAEAKKAIAELDQAMV 67
Query: 61 DVRVIFVDYVRP 72
+ R I V RP
Sbjct: 68 EGRAIKVVEARP 79
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T + L AFSQFG++T II D RS+G+G++T S+ E + A+ MN L
Sbjct: 12 LAWATNDQSLEQAFSQFGEITDCKIINDRETGRSRGFGFVTFSSSESMKNAIEGMNGQDL 71
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 72 DGRNITVN 79
>gi|409080475|gb|EKM80835.1| hypothetical protein AGABI1DRAFT_112564 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197375|gb|EKV47302.1| hypothetical protein AGABI2DRAFT_192533 [Agaricus bisporus var.
bisporus H97]
Length = 168
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT E L AFS FGQV + ++ D RS+G+G++T S EA A+ +N+ L
Sbjct: 34 LSWNTTDETLRQAFSDFGQVLDSIVMRDRDTGRSRGFGFVTFSNSGEADAAINGLNEQEL 93
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 94 DGRRIKVN 101
>gi|336373181|gb|EGO01519.1| hypothetical protein SERLA73DRAFT_120183 [Serpula lacrymans var.
lacrymans S7.3]
Length = 210
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGK-NRSKGYGYMTSSTEEEAQKALVDMNKML 59
+S T + L + FS+FG+V K TI+ D + +RS+G+G++ ST EEA + + ++N +
Sbjct: 15 LSIRTQERDLDEEFSRFGRVEKVTIVYDQRQSDRSRGFGFIKMSTVEEATRCIQELNGVD 74
Query: 60 LDVRVIFVDY 69
L+ R I VDY
Sbjct: 75 LNGRRIRVDY 84
>gi|332531199|ref|ZP_08407112.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332039306|gb|EGI75719.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 131
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ +N L
Sbjct: 10 LAYSIRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGLNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 SGRNVVVNEARP 81
>gi|624925|dbj|BAA05170.1| RNA-binding glycine rich protein [Nicotiana sylvestris]
gi|295393567|gb|ADG03639.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 259
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L +AFSQ G+V +A +IMD RS+G+G+++ ++ EEA AL ++ L
Sbjct: 47 LSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASALTALDGQDL 106
Query: 61 DVRVIFVDYV 70
R I V+Y
Sbjct: 107 HGRQIRVNYA 116
>gi|406994267|gb|EKE13283.1| hypothetical protein ACD_13C00045G0007 [uncultured bacterium]
Length = 134
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ FSTT++ L FS+ G V AT+IMD +SKG+G++ T EEA KA+ +N+
Sbjct: 10 LPFSTTQDELKTLFSESGTVVSATVIMDKMTGQSKGFGFVEMETTEEAAKAISSLNETEF 69
Query: 61 DVRVIFVDYVRP 72
R + V +P
Sbjct: 70 GGRTLIVAEAKP 81
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSVVVNEARP 81
>gi|390602556|gb|EIN11949.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 161
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT E L AFS +GQ+ + ++ D RS+G+G++T S+ EA A+ +N+ L
Sbjct: 10 LSWNTTDESLRAAFSHYGQILDSIVMRDRDTGRSRGFGFVTFSSSAEADNAIASLNEQDL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIRVN 77
>gi|323650232|gb|ADX97202.1| cold-inducible RNA-binding protein [Perca flavescens]
Length = 80
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E LA AF +FG + K +I D S+G+G++ E+A+ A+ MN L
Sbjct: 9 LSFDTTEESLAAAFGKFGTIEKVDVIKDRDTGYSRGFGFVKYENSEDAKDAMEGMNGKTL 68
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 69 DGRAIRVD 76
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG VT A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSVVVNEARP 81
>gi|302679630|ref|XP_003029497.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune
H4-8]
gi|300103187|gb|EFI94594.1| hypothetical protein SCHCODRAFT_85789 [Schizophyllum commune
H4-8]
Length = 174
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFS FGQV + ++ D RS+G+G++T S+ EA+ A+ +N+ L
Sbjct: 10 LSWNTTDDTLRQAFSNFGQVLDSIVMRDRETGRSRGFGFVTFSSSGEAESAISSLNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIKVN 77
>gi|217071940|gb|ACJ84330.1| unknown [Medicago truncatula]
Length = 211
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L D F +FG++T+A +++D RS+G+G++T ++ + A+ MN + L
Sbjct: 14 LAWSTSDRKLRDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTYDEKKVMEDAIDAMNGIDL 73
Query: 61 DVRVIFVDYVRP 72
D R I VD +P
Sbjct: 74 DGRTITVDRAQP 85
>gi|115448473|ref|NP_001048016.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|46390469|dbj|BAD15930.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|46390865|dbj|BAD16369.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Japonica Group]
gi|113537547|dbj|BAF09930.1| Os02g0730800 [Oryza sativa Japonica Group]
gi|218191513|gb|EEC73940.1| hypothetical protein OsI_08808 [Oryza sativa Indica Group]
Length = 399
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE AL MN ++
Sbjct: 302 LSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQII 361
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQS 89
+ +I VD +H + D RQP S
Sbjct: 362 NGWMIVVDVA---KHRSRD----RQPPYS 383
>gi|325296731|ref|NP_001191601.1| ELAV 2-like protein [Aplysia californica]
gi|65307079|gb|AAY42042.1| ELAV 2-like protein [Aplysia californica]
Length = 325
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T L FS FG V K I++D KN+ KGYG++T + +EAQ A+ +N
Sbjct: 248 IGFNATDRTLWQLFSPFGTVQKVNIMLDHEKNQCKGYGFVTMTNYQEAQNAINCLNGYFF 307
Query: 61 DVRVIFVDY 69
RV+ V +
Sbjct: 308 QGRVLQVSF 316
>gi|372269331|ref|ZP_09505379.1| RNA-binding region RNP-1 (RNA recognition motif) [Alteromonas sp.
S89]
Length = 89
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L +AF FG++++AT+I D RSKG+G++ ++EA+KA+ +MN L
Sbjct: 8 LAYGVTSDELHEAFGAFGEISRATVITDRETGRSKGFGFVEMPNDDEARKAIEEMNDQPL 67
Query: 61 DVRVIFVD 68
R I V+
Sbjct: 68 SGRNIRVN 75
>gi|194334049|ref|YP_002015909.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
gi|194311867|gb|ACF46262.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
Length = 90
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + T+E L +AF +FG V+ A II D RSKG+G++ S+ ++A +A+ +N L
Sbjct: 8 LDYGVTEEDLREAFGEFGDVSSANIITDKFTGRSKGFGFVEMSSSDDANEAIESLNDTDL 67
Query: 61 DVRVIFVDYVRP 72
+ R I V+ +P
Sbjct: 68 NGRTIKVNEAKP 79
>gi|375103924|ref|ZP_09750185.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374664655|gb|EHR69440.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 129
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S T L F++ G VT A ++MD RSKG+G++ + EEAQ A+ ++ +
Sbjct: 10 LAYSVTDASLQQQFAECGTVTSAKVMMDRDSGRSKGFGFVEMGSHEEAQAAIRKLHGASV 69
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 70 DGRALVVNEARP 81
>gi|339626955|ref|YP_004718598.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|379008663|ref|YP_005258114.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
gi|339284744|gb|AEJ38855.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus TPY]
gi|361054925|gb|AEW06442.1| RNP-1 like RNA-binding protein [Sulfobacillus acidophilus DSM
10332]
Length = 85
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++STT+E LA AF+Q QV A II D RS+G+G++ + +++A++A+ MN L
Sbjct: 10 LAWSTTEEELAQAFAQHAQVISARIITDRETGRSRGFGFVEVA-DQDAEQAVEAMNGTQL 68
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 69 GGRDIIVNEARP 80
>gi|351723119|ref|NP_001235732.1| uncharacterized protein LOC100526902 [Glycine max]
gi|255631115|gb|ACU15923.1| unknown [Glycine max]
Length = 176
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L D F +FG++ +A +++D RS+G+G++T ++ +A+ MN M L
Sbjct: 14 LAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGMDL 73
Query: 61 DVRVIFVDYVRP 72
D R I VD +P
Sbjct: 74 DGRTITVDRAQP 85
>gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-binding protein [Dianthus caryophyllus]
Length = 163
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T LA+AF++FG+VT + II D RS+G+G++T + E+ + A+ +MN L
Sbjct: 13 LSWGTDDRSLAEAFNKFGEVTDSKIINDRETGRSRGFGFVTFANEQSMRDAIDEMNGKEL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRSITVN 80
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+EEA++A+ MN M L+ R
Sbjct: 109 SIDSKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEEAERAIEKMNGMFLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + R
Sbjct: 167 KVFVGRFKSRR 177
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A + M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 318 ERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 37.7 bits (86), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS+FG ++ D +SKG+G+++ E+A+KA+ +MN L+ + I+V
Sbjct: 205 ERLQGLFSKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>gi|406911424|gb|EKD51218.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 125
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 17 FGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76
FG+V A +I D RSKG+G++ + +EEAQKA+ D+N +D R I V+ RP
Sbjct: 26 FGEVVSAQVIQDKFNGRSKGFGFVEMANDEEAQKAIDDLNNKEIDGRKIIVNEARPMEKR 85
Query: 77 NTDASLVR 84
+ D R
Sbjct: 86 DGDRKPFR 93
>gi|406700649|gb|EKD03814.1| RRM protein [Trichosporon asahii var. asahii CBS 8904]
Length = 423
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D FS+FG V K I+ D +RS+G+G++T + E+A + + +N ++L
Sbjct: 183 LSIRTRERDLEDEFSRFGDVEKVVIVYDQRTDRSRGFGFITMRSTEDATRCIEKLNGIVL 242
Query: 61 DVRVIFVDYVRPNRHY 76
R I VDY N+ +
Sbjct: 243 HGRAIRVDYSATNKAH 258
>gi|401882602|gb|EJT46854.1| hypothetical protein A1Q1_04405 [Trichosporon asahii var. asahii
CBS 2479]
Length = 392
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D FS+FG V K I+ D +RS+G+G++T + E+A + + +N ++L
Sbjct: 183 LSIRTRERDLEDEFSRFGDVEKVVIVYDQRTDRSRGFGFITMRSTEDATRCIEKLNGIVL 242
Query: 61 DVRVIFVDYVRPNRHY 76
R I VDY N+ +
Sbjct: 243 HGRAIRVDYSATNKAH 258
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +ST + L F FG VT + M+ G +R +G+G++T ST + A+ A+ M++ L
Sbjct: 26 LDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAKMDQSQL 85
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSP 90
D R I V+ RP R A +P P
Sbjct: 86 DGRTIRVNESRP-RGEGPGARRSNEPGTGP 114
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T +E + F Q+G V+ + D R +G+ ++T +EA+ A +N M L
Sbjct: 135 LSFDTNEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTMPA-KEAETACNKVNGMEL 193
Query: 61 DVRVIFVDYVRP 72
D R + V+ +P
Sbjct: 194 DGRTVRVNEAQP 205
>gi|427382637|ref|ZP_18879357.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus
YIT 12058]
gi|425729882|gb|EKU92733.1| hypothetical protein HMPREF9447_00390 [Bacteroides oleiciplenus
YIT 12058]
Length = 130
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T + L + F+Q+G+VT A II D RS+G+G++ +E+ QKA+ +N+
Sbjct: 8 LSWNTNSDSLQELFTQYGEVTSAYIINDRETGRSRGFGFVEMPNDEDGQKAIDGLNETDF 67
Query: 61 DVRVIFVDYVRP 72
+ + I V RP
Sbjct: 68 EGKTIAVSVARP 79
>gi|18415425|ref|NP_567594.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|51971865|dbj|BAD44597.1| putative protein [Arabidopsis thaliana]
gi|107738041|gb|ABF83619.1| At4g20030 [Arabidopsis thaliana]
gi|332658864|gb|AEE84264.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 152
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ FST+++ L FS FG++ + +I D RSKGY ++ +++++A A+ M++ +
Sbjct: 47 LPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY 106
Query: 61 DVRVIFVDYVRPNRH 75
+ R+I++D +P +
Sbjct: 107 NGRMIYIDIAKPGKR 121
>gi|224059014|ref|XP_002299678.1| predicted protein [Populus trichocarpa]
gi|222846936|gb|EEE84483.1| predicted protein [Populus trichocarpa]
Length = 147
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST+ L + F +FG + +A +++D RS+G+G++T ++ + A+ MN M L
Sbjct: 14 LSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIEGMNGMDL 73
Query: 61 DVRVIFVDYVRPNR 74
D R I VD +P +
Sbjct: 74 DGRTITVDKAQPQQ 87
>gi|62857699|ref|NP_001017228.1| cold-inducible RNA-binding protein [Xenopus (Silurana)
tropicalis]
gi|123910273|sp|Q28IQ9.1|CIRBP_XENTR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|89268649|emb|CAJ83306.1| cold inducible RNA binding protein [Xenopus (Silurana)
tropicalis]
Length = 166
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F TT+E L FS++GQV + ++ D RS+G+G++T E+A+ A++ MN +
Sbjct: 13 LNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L F +FG+V A +I + G RSKG+GY+ ++ E+A+KA+ M +
Sbjct: 408 LSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDFASPEDARKAVEAMAGTEI 467
Query: 61 DVRVIFVDYVRP 72
D R I VD+ P
Sbjct: 468 DGRTINVDFSAP 479
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNK--- 57
+ FS T++ + +AFS++G + + D R KG+GY+ +T+E A A V++ +
Sbjct: 508 LPFSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAAT-AAVNVGRGDG 566
Query: 58 MLLDVRVIFVDYVRP 72
+ +D R +DY +P
Sbjct: 567 IYIDQRQARLDYSQP 581
>gi|21554348|gb|AAM63455.1| unknown [Arabidopsis thaliana]
Length = 152
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ FST+++ L FS FG++ + +I D RSKGY ++ +++++A A+ M++ +
Sbjct: 47 LPFSTSEDFLKREFSAFGEIAEVKLIKDEAMQRSKGYAFIQFTSQDDAFLAIETMDRRMY 106
Query: 61 DVRVIFVDYVRPNRH 75
+ R+I++D +P +
Sbjct: 107 NGRMIYIDIAKPGKR 121
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L D FS FG + ++ D +N SKGYG++ T+EEA++A+ MN M L+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGR 172
Query: 70 VRPNR 74
+ R
Sbjct: 173 FKSRR 177
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A + M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 318 ERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D FS+FG ++ D +SKG+G+++ E+A+KA+ +MN L+ + I+V
Sbjct: 205 ERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYV 263
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ MLA+ F G VT A +I D RSKG+GY+ +T EEA+KA + +
Sbjct: 246 LSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFI 305
Query: 61 DVRVIFVDYVRPNRHYNTDASLVR 84
D R I VD+ + DA+ R
Sbjct: 306 DGREIKVDFSTGKATNSNDAAGAR 329
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 14 FSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72
FS+ +V + + R KG+GY+T ++ E+A+ A +N ++ R +DY P
Sbjct: 362 FSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRNCRLDYSTP 420
>gi|300113043|ref|YP_003759618.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
gi|299538980|gb|ADJ27297.1| RNP-1 like RNA-binding protein [Nitrosococcus watsonii C-113]
Length = 118
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T E L AF +G+V+ A +I+D NRSKG+G++ +++E+A+ A+ +M+ +
Sbjct: 25 LSYQVTDEDLRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAETAIKEMHDSDI 84
Query: 61 DVRVIFVDYVRPNRHYNT 78
R I V+ RP N
Sbjct: 85 KGRQIVVNEARPRNESNN 102
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFS+FG + + ++ D RS+G+G++T T EEA A+ ++N+ L
Sbjct: 10 LSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAINNLNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIRVN 77
>gi|319765042|ref|YP_004128979.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827234|ref|YP_004390537.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
gi|317119603|gb|ADV02092.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312606|gb|AEB87021.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans
K601]
Length = 144
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S + L AF QFG VT A ++M+ RSKG+G++ ++ +AQ A+ MN L
Sbjct: 10 LPYSVRDQDLEQAFGQFGVVTSAKVMMERDTGRSKGFGFVEMGSDADAQAAINGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|392570008|gb|EIW63181.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 126
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFS +GQ+ + ++ D RS+G+G++T S+ EAQ A+ +N+ L
Sbjct: 10 LSWNTTDDSLRSAFSNYGQILDSIVMRDRDTGRSRGFGFVTFSSSGEAQTAISSLNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIKVN 77
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 39/67 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT EML DAFSQ G++ I+ D RS+G G + ST EE A+ MN L
Sbjct: 106 LSWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFSTREEMNNAISTMNGSTL 165
Query: 61 DVRVIFV 67
D R I V
Sbjct: 166 DGRQIAV 172
>gi|357442985|ref|XP_003591770.1| RNA-binding protein [Medicago truncatula]
gi|355480818|gb|AES62021.1| RNA-binding protein [Medicago truncatula]
Length = 284
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + +I+D RSKGY ++ +TEE A AL +MN ++
Sbjct: 199 LSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 258
Query: 61 DVRVIFVDYVR--PNRH 75
+ +I VD + P R+
Sbjct: 259 NGWMIVVDVAKTTPPRY 275
>gi|222623613|gb|EEE57745.1| hypothetical protein OsJ_08262 [Oryza sativa Japonica Group]
Length = 369
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE AL MN ++
Sbjct: 272 LSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAMNGQII 331
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQS 89
+ +I VD +H + D RQP S
Sbjct: 332 NGWMIVVDVA---KHRSRD----RQPPYS 353
>gi|145219698|ref|YP_001130407.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
gi|145205862|gb|ABP36905.1| RNP-1 like RNA-binding protein [Chlorobium phaeovibrioides DSM
265]
Length = 90
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ +++ L DAFS+FGQV A IIMD RSKG+G++ S ++ A++A+ M+
Sbjct: 8 LPYTVSEDDLRDAFSEFGQVESANIIMDKFSGRSKGFGFVEMSDDDAAREAIEAMHNKDF 67
Query: 61 DVRVIFVDYVRP 72
R I V+ +P
Sbjct: 68 MGRSIMVNEAKP 79
>gi|193215305|ref|YP_001996504.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
gi|193088782|gb|ACF14057.1| RNP-1 like RNA-binding protein [Chloroherpeton thalassium ATCC
35110]
Length = 104
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T+ L D FS++G+V A II+D +S+G+G++ E +A++A+ +N L
Sbjct: 8 LSYTLTENELRDVFSEYGEVASANIIVDKYSGKSRGFGFVDMPNEADAEQAIEALNGSQL 67
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 68 DGRSLKVNEARP 79
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ ++ D RSKGYG++T E+A+KAL +N L
Sbjct: 263 LHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQLNGFEL 322
Query: 61 DVRVIFVDYVRPNRHYNTDASLV 83
R + V +V TDAS +
Sbjct: 323 AGRPMKVGHVTERSDAATDASFL 345
>gi|359478318|ref|XP_003632106.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Vitis vinifera]
gi|296084274|emb|CBI24662.3| unnamed protein product [Vitis vinifera]
Length = 108
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + +L DAF Q+G++ + +I D +SKGYG++ +++++A AL +M+ L
Sbjct: 36 LSYDTNETILKDAFGQYGEIIEVKVICDHVSGKSKGYGFVQFTSDDDAHIALKEMDGQSL 95
Query: 61 DVRVIFVDY 69
D R I V Y
Sbjct: 96 DGRNIRVTY 104
>gi|351725255|ref|NP_001236574.1| uncharacterized protein LOC100527220 [Glycine max]
gi|255631812|gb|ACU16273.1| unknown [Glycine max]
Length = 138
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ + L DAFS FG V A +I D RS+G+G++ S +E A AL M+ L
Sbjct: 43 LSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDL 102
Query: 61 DVRVIFVDYV--RP 72
D R I V Y RP
Sbjct: 103 DGRSIRVSYANDRP 116
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+E L AF Q+G+V+ IIMD RS+G+ ++ + E A+ A+ ++N +
Sbjct: 62 LSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENLNGHEI 121
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 122 DGRSVTVNEARP 133
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+E L AF Q+G+V+ IIMD RS+G+ ++ + E A+ A+ ++N +
Sbjct: 62 LSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENLNGHEI 121
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 122 DGRSVTVNEARP 133
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+E L AF Q+G+V+ IIMD RS+G+ ++ + E A+ A+ ++N +
Sbjct: 62 LSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENLNGHEI 121
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 122 DGRSVTVNEARP 133
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S + L FS+FG V A ++ D RSKG+G++ ++E EAQ A+ +N +D
Sbjct: 12 YSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAINGLNGQSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ RP
Sbjct: 72 RQIVVNVSRP 81
>gi|297804134|ref|XP_002869951.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
gi|297315787|gb|EFH46210.1| hypothetical protein ARALYDRAFT_492869 [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ FST+++ L FS FG++ + +I D RSKGY ++ +++++A A+ M++ +
Sbjct: 47 LPFSTSEDFLKREFSAFGEIAEVKLIRDESMKRSKGYAFIQFTSQDDAFLAIETMDRRMY 106
Query: 61 DVRVIFVDYVRPNRH 75
+ R+I++D +P +
Sbjct: 107 NGRMIYIDIAKPGKR 121
>gi|110597824|ref|ZP_01386107.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
gi|110340549|gb|EAT59032.1| RNA-binding region RNP-1 (RNA recognition motif) [Chlorobium
ferrooxidans DSM 13031]
Length = 90
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S T+ L + F +FG+V+ A++I D RSKG+G++ + + EA A+ D+N L
Sbjct: 8 LDYSVTEADLRETFGEFGEVSSASVINDKFTGRSKGFGFVEMANDAEAASAIADLNDSDL 67
Query: 61 DVRVIFVDYVRP 72
+ R I V+ +P
Sbjct: 68 NGRTIKVNEAKP 79
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L AFSQ+G++ A II D RS+G+G++T +EE ++A+ +MN L
Sbjct: 13 LAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKEL 72
Query: 61 DVRVIFVDYVRPNR 74
D R I V+ + R
Sbjct: 73 DGRNITVNEAQSRR 86
>gi|12659074|gb|AAK01176.1| RNA-binding protein [Triticum aestivum]
Length = 183
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT L DAF +FG+VT+ +++D RS+G+G++T ++ ++A+ MN + L
Sbjct: 14 LSWNTTDVDLKDAFGKFGRVTETKVVLDKFSGRSRGFGFVTFDDKKAMEEAVEAMNGIDL 73
Query: 61 DVRVIFVDYVRP 72
D R I V+ +P
Sbjct: 74 DGRNITVERAQP 85
>gi|262409231|ref|ZP_06085775.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645795|ref|ZP_06723479.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294809469|ref|ZP_06768173.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC
1b]
gi|298482319|ref|ZP_07000506.1| RNA-binding protein [Bacteroides sp. D22]
gi|336406428|ref|ZP_08587083.1| hypothetical protein HMPREF0127_04396 [Bacteroides sp. 1_1_30]
gi|345509855|ref|ZP_08789442.1| hypothetical protein BSAG_03520 [Bacteroides sp. D1]
gi|423216418|ref|ZP_17202942.1| hypothetical protein HMPREF1074_04474 [Bacteroides xylanisolvens
CL03T12C04]
gi|229446016|gb|EEO51807.1| hypothetical protein BSAG_03520 [Bacteroides sp. D1]
gi|262352978|gb|EEZ02074.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638874|gb|EFF57208.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294443341|gb|EFG12104.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC
1b]
gi|295085347|emb|CBK66870.1| RNA-binding proteins (RRM domain) [Bacteroides xylanisolvens
XB1A]
gi|298271606|gb|EFI13180.1| RNA-binding protein [Bacteroides sp. D22]
gi|335934632|gb|EGM96617.1| hypothetical protein HMPREF0127_04396 [Bacteroides sp. 1_1_30]
gi|392690789|gb|EIY84043.1| hypothetical protein HMPREF1074_04474 [Bacteroides xylanisolvens
CL03T12C04]
Length = 99
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT L + F++FG+V+ A +I D RS+G+ ++ + + E QKA+ ++N +
Sbjct: 8 LSYGTTDADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMTNDGEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVISVSVARP 79
>gi|123473695|ref|XP_001320034.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902831|gb|EAY07811.1| hypothetical protein TVAG_312100 [Trichomonas vaginalis G3]
Length = 215
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F T+ L + F +FG+V + I + NRSKGYG+++ + +E+AQKA+ MN L
Sbjct: 38 IPFELTEPKLKEIFGKFGEVLSSKIPTNQA-NRSKGYGFVSFALKEDAQKAIDSMNNTEL 96
Query: 61 DVRVIFVDYVR 71
D R I V++ +
Sbjct: 97 DGRKIEVEFAK 107
>gi|331237853|ref|XP_003331583.1| hypothetical protein PGTG_13383 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310573|gb|EFP87164.1| hypothetical protein PGTG_13383 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 351
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF+T E L D F GQ++ II RS GYG++T +T EEA+KA+ +K +
Sbjct: 38 LSFATKDEQLRDVFQTHGQISDVQIIYR--GTRSLGYGFVTFATCEEAEKAVAATDKTEI 95
Query: 61 DVRVIFVDYVRP 72
D R I V+ +P
Sbjct: 96 DGRAINVEIAKP 107
>gi|297793541|ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT + L F+ FGQ+ +A +I D R KG+G++T +E++AQ AL +N ++
Sbjct: 14 LSAYTTDQSLRQLFAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQNALKALNGKIV 73
Query: 61 DVRVIFVD 68
+ R+IFV+
Sbjct: 74 NGRLIFVE 81
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L AFSQ+G++ A II D RS+G+G++T +EE ++A+ +MN L
Sbjct: 13 LAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKEL 72
Query: 61 DVRVIFVDYVRPNR 74
D R I V+ + R
Sbjct: 73 DGRSITVNEAQSRR 86
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFST + L +AF+++G+V +A +I+D RS+G+G++T ++ EEA A+ ++ L
Sbjct: 50 ISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDL 109
Query: 61 DVRVIFVDYV 70
R + V+Y
Sbjct: 110 HGRRVRVNYA 119
>gi|329956785|ref|ZP_08297354.1| hypothetical protein HMPREF9445_02226 [Bacteroides clarus YIT
12056]
gi|328523824|gb|EGF50911.1| hypothetical protein HMPREF9445_02226 [Bacteroides clarus YIT
12056]
Length = 99
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ L + F++FG+V+ A +I+D RS+G+ ++ S + E QKA+ ++N +
Sbjct: 8 LSYGVNNADLTNLFAEFGEVSSAKVILDRETGRSRGFAFVEMSNDTEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DSKVISVSVARP 79
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L +AF QFG +T A +I D+ RSKG+G++ S+ EEA KA+ +MN + +
Sbjct: 296 SIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGK 354
Query: 64 VIFV 67
++V
Sbjct: 355 PLYV 358
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ DI N SKG+G++ ++E AQ+A+ +N ML++ +
Sbjct: 100 SIDNKALYDTFSSFGNILSCKVVCDI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDK 157
Query: 64 VIFV 67
+FV
Sbjct: 158 KVFV 161
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFST + L +AF+++G+V +A +I+D RS+G+G++T ++ EEA A+ ++ L
Sbjct: 50 ISFSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDL 109
Query: 61 DVRVIFVDYV 70
R + V+Y
Sbjct: 110 HGRRVRVNYA 119
>gi|39996426|ref|NP_952377.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|409911860|ref|YP_006890325.1| RNA-binding protein [Geobacter sulfurreducens KN400]
gi|39983306|gb|AAR34700.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gi|298505436|gb|ADI84159.1| RNA-binding protein [Geobacter sulfurreducens KN400]
Length = 107
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T++ L FS G VT II D RSKG GY+ TEEEA++A+ ++ LL
Sbjct: 10 MSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETLDGALL 69
Query: 61 DVRVIFVDYVRPNRH 75
RVI V RP +
Sbjct: 70 RNRVITVSVARPQKQ 84
>gi|343432668|ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa]
Length = 156
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|2827657|emb|CAA16611.1| putative protein [Arabidopsis thaliana]
gi|7268798|emb|CAB79003.1| putative protein [Arabidopsis thaliana]
Length = 115
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 47/75 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ FST+++ L FS FG++ + +I D RSKGY ++ +++++A A+ M++ +
Sbjct: 10 LPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMY 69
Query: 61 DVRVIFVDYVRPNRH 75
+ R+I++D +P +
Sbjct: 70 NGRMIYIDIAKPGKR 84
>gi|77166221|ref|YP_344746.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|254435869|ref|ZP_05049376.1| RNA-binding protein [Nitrosococcus oceani AFC27]
gi|76884535|gb|ABA59216.1| RNA-binding protein, RNP-1 [Nitrosococcus oceani ATCC 19707]
gi|207088980|gb|EDZ66252.1| RNA-binding protein [Nitrosococcus oceani AFC27]
Length = 119
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T E L AF +G+V+ A +I+D NRSKG+G++ +++E+A+ A+ +M+ +
Sbjct: 25 LSYQVTDEDLRAAFENYGEVSSAKVIVDKFSNRSKGFGFVEMASKEDAEAAIKEMHDSDI 84
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPA 87
R + V+ RP + + R
Sbjct: 85 KGRQVVVNEARPRNESSNNGGFRRNDG 111
>gi|374385669|ref|ZP_09643172.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
gi|373225371|gb|EHP47705.1| hypothetical protein HMPREF9449_01558 [Odoribacter laneus YIT
12061]
Length = 100
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L + F+++G+++ A +I D RS+G+G++ ++E QKA+ ++N+ D R+I V
Sbjct: 17 LHELFNEYGEISSAKVITDRESGRSRGFGFVEMKNDDEGQKAISELNEAEYDGRIISVAV 76
Query: 70 VRPNRHYNTDASLVRQPAQSPK 91
RP + + S R S +
Sbjct: 77 ARPRTERSNNGSYNRNSYNSNR 98
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae
EF01-2]
Length = 175
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S L AF QFG V A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSIVVNEARP 81
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+E L AF Q+G+V+ IIMD RS+G+ ++ + E A+ A+ ++N +
Sbjct: 73 LSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENLNGHEI 132
Query: 61 DVRVIFVDYVRP 72
D R + V+ RP
Sbjct: 133 DGRSVTVNEARP 144
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ LA AF ++G + K +I D RS+G+G++ E+A+ AL MN L
Sbjct: 12 LSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDAMNGKTL 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRAIRVD 79
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E L +AF ++G + A ++ D RS+GYG++ +T E + ALV +N + L
Sbjct: 211 LSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGVEL 270
Query: 61 DVRVIFV 67
+ R + V
Sbjct: 271 EGRAMRV 277
>gi|148702008|gb|EDL33955.1| mCG116386, isoform CRA_e [Mus musculus]
Length = 179
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 38 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 97
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 98 DGRQIRVDHA 107
>gi|799015|emb|CAA89058.1| putative glycine rich RNA binding protein [Solanum tuberosum]
Length = 175
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L+DAFSQ+ +V ++ II D RS+G+G++T E+ + A+ MN+ L
Sbjct: 13 LAWATTDQTLSDAFSQYAEVVESKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMNRQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ ++ D RSKGYG++T E+A+KAL +N L
Sbjct: 151 LHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFHDAEDAKKALEQLNGFEL 210
Query: 61 DVRVIFVDYVRPNRHYNTDASLV 83
R + V +V TDAS +
Sbjct: 211 AGRPMKVGHVTERSDAATDASFL 233
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + LA F++ G+V AT+ MD RS+G+GY+ ST E +KA +++N +
Sbjct: 340 LSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFSTSEAVEKA-IELNGKEI 398
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
D R + VD P N DAS
Sbjct: 399 DGRAVNVDKSNP---PNKDAS 416
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF + L +AFS+ G+V + D R KG+GY+ S E A+KA M + L
Sbjct: 440 LSFGMNDDALWEAFSEHGEVKNVRLPTDRESGRPKGFGYVEFSDVETAKKAHAAMQGVEL 499
Query: 61 DVRVIFVDYVRP 72
D R + +D+ +P
Sbjct: 500 DGRSVRLDFSQP 511
>gi|223938031|ref|ZP_03629929.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223893245|gb|EEF59708.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 114
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+ + D F+Q G VT+ +IMD R++G+G++T ST+E A A+ ++N
Sbjct: 9 LSFDATENDVQDLFAQHGPVTEVNLIMDKMTGRARGFGFVTMSTKEGADAAVQNLNGKQW 68
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 69 QGRALTVNEARP 80
>gi|218193515|gb|EEC75942.1| hypothetical protein OsI_13038 [Oryza sativa Indica Group]
Length = 261
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T + LADAF +FG+V A I+++ R +G+G++T S E A+ +M+ L
Sbjct: 14 LSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEMHCQEL 73
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D R I V+ P NTD
Sbjct: 74 DGRTISVNKAEPK--MNTD 90
>gi|373854326|ref|ZP_09597124.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391231688|ref|ZP_10267894.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
gi|372472193|gb|EHP32205.1| RNP-1 like RNA-binding protein [Opitutaceae bacterium TAV5]
gi|391221349|gb|EIP99769.1| RRM domain-containing RNA-binding protein [Opitutaceae bacterium
TAV1]
Length = 122
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF QFG VT + MD R +G+ ++T ST EEA+ A +N + L
Sbjct: 11 MSFKTSEDELRSAFGQFGNVTDVYVAMDKMTGRPRGFAFVTMSTPEEAKIAAEKLNGVDL 70
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 71 GGRALTVNEARP 82
>gi|291225685|ref|XP_002732813.1| PREDICTED: splicing factor, arginine/serine-rich 10-like
[Saccoglossus kowalevskii]
Length = 269
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S STT+ L +AF ++G + ++ D RS+G+ +++ +EE+A++A N M +
Sbjct: 122 LSLSTTERELREAFGRYGPIANINVVYDHQSGRSRGFAFLSYESEEDAREAKDRTNGMEI 181
Query: 61 DVRVIFVDY 69
D R I VDY
Sbjct: 182 DGRRIRVDY 190
>gi|238011394|gb|ACR36732.1| unknown [Zea mays]
Length = 149
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STEE + A+ MN L
Sbjct: 15 LAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|219888685|gb|ACL54717.1| unknown [Zea mays]
gi|414869098|tpg|DAA47655.1| TPA: glycine-rich protein1 [Zea mays]
Length = 144
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STEE + A+ MN L
Sbjct: 15 LAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|195612516|gb|ACG28088.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|414869096|tpg|DAA47653.1| TPA: glycine-rich protein1 isoform 1 [Zea mays]
gi|414869097|tpg|DAA47654.1| TPA: glycine-rich protein1 isoform 2 [Zea mays]
Length = 155
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STEE + A+ MN L
Sbjct: 15 LAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|195609654|gb|ACG26657.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612080|gb|ACG27870.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612572|gb|ACG28116.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STEE + A+ MN L
Sbjct: 15 LAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|302818104|ref|XP_002990726.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
gi|300141464|gb|EFJ08175.1| hypothetical protein SELMODRAFT_185536 [Selaginella moellendorffii]
Length = 738
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T++E L F Q+G+V + +I D NRSKGYGY+ EEA +A+ +++ +
Sbjct: 232 LAYTTSEEELVSLFGQYGEVVQVHVICDKETNRSKGYGYVGFMLPEEATRAMTELDNSIF 291
Query: 61 DVRVIFV 67
R++ V
Sbjct: 292 QGRLLHV 298
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T + L + F GQVT A + M + +S+ +G++ ++EEA+ A+ N+ LD +
Sbjct: 17 TDDKLKEHFGAKGQVTDAKV-MRTREGKSRRFGFVGFYSQEEAESAVAYFNRSFLDTSRL 75
Query: 66 FVDYVR 71
+ R
Sbjct: 76 VCEVAR 81
>gi|342882418|gb|EGU83098.1| hypothetical protein FOXB_06359 [Fusarium oxysporum Fo5176]
Length = 113
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L FS+FG+VT A ++ D RS+G+G++T S++EEA A+ MN+
Sbjct: 9 LAWATTSDTLRAKFSEFGEVTDAIVMTDRETGRSRGFGFVTFSSQEEASAAIEAMNEQEF 68
Query: 61 DVRVIFV 67
+ R I V
Sbjct: 69 EGRQIRV 75
>gi|223942615|gb|ACN25391.1| unknown [Zea mays]
Length = 120
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STEE + A+ MN L
Sbjct: 15 LAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|406873754|gb|EKD23843.1| hypothetical protein ACD_81C00167G0002 [uncultured bacterium]
Length = 111
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +STT++ L D FSQ G V A II+D RSKG+G++ ++++EA+KA+ N
Sbjct: 10 LPYSTTQDALNDLFSQAGTVESAMIIIDKMTGRSKGFGFVEMASDDEAEKAIDMFNGKDF 69
Query: 61 DVRVIFVDYVRP 72
+ R + V+ RP
Sbjct: 70 EGRSLTVNVARP 81
>gi|346319566|gb|EGX89167.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Cordyceps militaris CM01]
Length = 450
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ EA+KAL M+ L R I
Sbjct: 174 EILTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPEAEKALSSMDGEWLGSRAIRC 233
Query: 68 DYV 70
++
Sbjct: 234 NWA 236
>gi|196232841|ref|ZP_03131691.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
gi|196223040|gb|EDY17560.1| RNP-1 like RNA-binding protein [Chthoniobacter flavus Ellin428]
Length = 107
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+ L D F++ G V++AT++ D +S+G+G++T S+ EEAQKA+ + +
Sbjct: 10 LSFDTTEMDLQDTFAEAGTVSEATLMQDKFTGKSRGFGFVTMSSSEEAQKAIDLFHGKTV 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 QGRALTVNEARP 81
>gi|115454617|ref|NP_001050909.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|31712074|gb|AAP68379.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|108710427|gb|ABF98222.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113549380|dbj|BAF12823.1| Os03g0681900 [Oryza sativa Japonica Group]
gi|215692670|dbj|BAG88090.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692827|dbj|BAG88216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625569|gb|EEE59701.1| hypothetical protein OsJ_12125 [Oryza sativa Japonica Group]
Length = 308
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T + LADAF +FG+V A I+++ R +G+G++T S E A+ +M+ L
Sbjct: 14 LSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVDSAIKEMHCQEL 73
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D R I V+ P NTD
Sbjct: 74 DGRTISVNKAEPK--MNTD 90
>gi|351706516|gb|EHB09435.1| Putative RNA-binding protein 3 [Heterocephalus glaber]
Length = 157
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S + LA FS+ G+V+ AT+ +D RS+G+GY+ ST + +KAL MN +
Sbjct: 315 LSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTADAVEKAL-KMNGYEI 373
Query: 61 DVRVIFVDYVRP 72
D R I VD P
Sbjct: 374 DGRAIKVDLSTP 385
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L +AF QFG +T A +I D+ RSKG+G++ S+ EEA KA+ +MN + +
Sbjct: 296 SIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGK 354
Query: 64 VIFV 67
++V
Sbjct: 355 PLYV 358
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ DI N SKG+G++ ++E AQ+A+ +N ML++ +
Sbjct: 100 SIDNKALYDTFSSFGNILSCKVVCDI--NGSKGFGFVHYESDESAQRAIEKVNGMLMEDK 157
Query: 64 VIFV 67
+FV
Sbjct: 158 KVFV 161
>gi|187373099|gb|ACD03270.1| glycine-rich RNA-binding protein [Nicotiana tabacum]
Length = 157
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L DAFSQ+G++ + II D RS+G+G++T E+ + A+ MN L
Sbjct: 13 LAWATTDQTLGDAFSQYGEIVDSKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|294884882|gb|ADF47449.1| TIA1-like protein [Dugesia japonica]
Length = 383
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L + FS FG+VT+ II D+ + KGYG++ +T+EEA++AL MN L R I
Sbjct: 127 QFLRERFSLFGRVTECKIIKDMHTQKPKGYGFVAYATKEEAEEALNKMNGKFLGTRQIRT 186
Query: 68 DYVRPNRHYNTDASLVRQPAQSPKEN 93
++ +R+P Q P ++
Sbjct: 187 NWA------------IRRPPQPPGKD 200
>gi|213406493|ref|XP_002174018.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
gi|212002065|gb|EEB07725.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
Length = 690
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT L D FS V A ++ D +SKG+G++T S E+A +AL ++ L
Sbjct: 14 LTFSTTSNDLTDFFSNAAPVKHAVVVTDKETGQSKGFGFVTFSLHEDAVRALEELKNKKL 73
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSPKE 92
D R++ +++ P + + ++P Q K+
Sbjct: 74 DGRILRMEFAAPRKRNGETSDKPKKPEQVRKD 105
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S + LA FS+ G+V+ AT+ +D RS+G+GY+ ST + +KAL MN +
Sbjct: 315 LSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTADAVEKAL-KMNGYEI 373
Query: 61 DVRVIFVDYVRP 72
D R I VD P
Sbjct: 374 DGRAIKVDLSTP 385
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 106
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+ +T++ L F Q GQVT AT+I D RSKG+G++ S+++EA+ A+ +N L
Sbjct: 10 YQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIEQLNGSTLGD 69
Query: 63 RVIFVDYVRPNR 74
R I V+ R R
Sbjct: 70 RTITVNEARERR 81
>gi|229367642|gb|ACQ58801.1| Cold-inducible RNA-binding protein [Anoplopoma fimbria]
Length = 179
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T +E LA AF ++G + K +I D +S+G+G++ E+A+ A+ MN L
Sbjct: 12 LSFETNEESLAAAFGKYGTIEKVDVIRDRETEKSRGFGFVKYDNAEDAKDAMDGMNGQTL 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRTIRVD 79
>gi|209154564|gb|ACI33514.1| RNA-binding protein 39 [Salmo salar]
Length = 525
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 256 LHFNITEEMLRGIFEPFGKIESIQLMMDSETGRSKGYGFITFSDTECAKKALDQLNGFEL 315
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 316 AGRPMKVGHV 325
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T + L DAF FG VT II+D RS+G+G++ ++ +EA+ AL +M+ L
Sbjct: 52 LAWATDENTLRDAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVALQEMDGREL 111
Query: 61 DVRVIFVDYV 70
R I VDY
Sbjct: 112 AGRQIRVDYA 121
>gi|37497112|ref|NP_058089.2| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|261862337|ref|NP_001159881.1| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|26340316|dbj|BAC33821.1| unnamed protein product [Mus musculus]
gi|26352956|dbj|BAC40108.1| unnamed protein product [Mus musculus]
gi|37589528|gb|AAH59098.1| Rbm3 protein [Mus musculus]
Length = 154
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|378726298|gb|EHY52757.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 481
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I V
Sbjct: 189 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALASMDGEWLGSRAIRV 248
Query: 68 DYV 70
++
Sbjct: 249 NWA 251
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG V ++ D +N SKGYG++ T E A++A+ MN + L+ R
Sbjct: 109 SINNKALYDTVSAFGNVLSCKVVCD--ENGSKGYGFVHFETREAAERAIEKMNGIPLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
>gi|215820612|ref|NP_001135965.1| RNA binding motif protein 39 [Acyrthosiphon pisum]
Length = 501
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T+EML F FG V ++MD RSKGYG++T E+A+KAL +N +
Sbjct: 245 LHYNITEEMLRGIFEPFGHVDNIQLMMDTETGRSKGYGFLTYRNAEDAKKALEHLNGFEI 304
Query: 61 DVRVIFVDYVRPN 73
R + V +V N
Sbjct: 305 AGRPMKVGHVTEN 317
>gi|417396333|gb|JAA45200.1| Putative mrna cleavage and polyadenylation factor i complex
subunit rna15 [Desmodus rotundus]
Length = 158
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|149744489|ref|XP_001493789.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Equus
caballus]
Length = 156
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|118788821|ref|XP_317010.3| AGAP008433-PA [Anopheles gambiae str. PEST]
gi|116122929|gb|EAA12873.4| AGAP008433-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 276 LHFNITEDMLNGIFEPFGKIDNIQLIMDADTGRSKGYGFITFHNADDAKKALEQLNGFEL 335
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V V T ASL
Sbjct: 336 AGRPMKVGNVTERLDVTTHASL 357
>gi|189339246|ref|NP_446148.1| putative RNA-binding protein 3 [Rattus norvegicus]
gi|149028410|gb|EDL83795.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
gi|149028411|gb|EDL83796.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|407940456|ref|YP_006856097.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407898250|gb|AFU47459.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 116
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T L F++FG V+ A ++MD RSKG+G++ + E AQ A+ ++ M +D
Sbjct: 12 YSVTDATLESNFAEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAIRALHGMSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ RP
Sbjct: 72 RSIVVNLARP 81
>gi|350538645|ref|NP_001233728.1| RNA-binding motif 3 [Cricetulus griseus]
gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus]
Length = 156
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|410988519|ref|XP_004000531.1| PREDICTED: putative RNA-binding protein 3 [Felis catus]
Length = 160
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|224286824|gb|ACN41115.1| unknown [Picea sitchensis]
Length = 149
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT E L FS+FGQ+ +A ++ D RS+G+G++ +T E+A K M+ L
Sbjct: 51 LSRQTTDEGLRAKFSEFGQLVEARVVTDRISGRSRGFGFVRYATLEDAAKGKEGMDGKFL 110
Query: 61 DVRVIFVDYVR 71
D VIF D+ +
Sbjct: 111 DGWVIFADFAK 121
>gi|2226370|gb|AAC50020.1| RNA-binding protein [Nicotiana glutinosa]
Length = 156
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L DAFSQ+G++ + II D RS+G+G++T E+ + A+ MN L
Sbjct: 13 LAWATTDQTLGDAFSQYGEILDSKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RS+G+G++ S+ EEA KA+ +MN +++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYV 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
>gi|387913830|gb|AFK10524.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873312|gb|AFM85488.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873324|gb|AFM85494.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873420|gb|AFM85542.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873526|gb|AFM85595.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392873598|gb|AFM85631.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
gi|392877296|gb|AFM87480.1| cold inducible RNA binding protein isoform 3 [Callorhinchus
milii]
Length = 136
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L + FS++GQV++ II D S+G+G++T + ++AQ AL MN L
Sbjct: 12 LNFNTEEQSLEEVFSEYGQVSEVRIIRDRDTGTSRGFGFVTFESPDDAQDALTSMNGRSL 71
Query: 61 DVRVIFVD 68
+ R I VD
Sbjct: 72 EGRQIRVD 79
>gi|212538449|ref|XP_002149380.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
gi|210069122|gb|EEA23213.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
Length = 424
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ E+A+KAL M++ L R I
Sbjct: 197 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKALKSMDREWLGSRAIRC 256
Query: 68 DYV 70
++
Sbjct: 257 NWA 259
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLWKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|261862339|ref|NP_001159882.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|261862342|ref|NP_001159883.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|6093936|sp|O89086.1|RBM3_MOUSE RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
gi|3395381|dbj|BAA32060.1| rbm3 [Mus musculus]
gi|12834559|dbj|BAB22957.1| unnamed protein product [Mus musculus]
gi|12840849|dbj|BAB24981.1| unnamed protein product [Mus musculus]
gi|13879226|gb|AAH06580.1| Rbm3 protein [Mus musculus]
gi|15983757|gb|AAL10707.1| RNA-binding motif protein 3 [Mus musculus]
gi|74180334|dbj|BAE32335.1| unnamed protein product [Mus musculus]
gi|74198712|dbj|BAE39828.1| unnamed protein product [Mus musculus]
gi|74228699|dbj|BAE21846.1| unnamed protein product [Mus musculus]
gi|76780243|gb|AAI06177.1| Rbm3 protein [Mus musculus]
gi|148702004|gb|EDL33951.1| mCG116386, isoform CRA_a [Mus musculus]
gi|148702009|gb|EDL33956.1| mCG116386, isoform CRA_a [Mus musculus]
Length = 153
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|212538447|ref|XP_002149379.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
gi|210069121|gb|EEA23212.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Talaromyces marneffei ATCC 18224]
Length = 482
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ E+A+KAL M++ L R I
Sbjct: 197 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFREFEDAEKALKSMDREWLGSRAIRC 256
Query: 68 DYV 70
++
Sbjct: 257 NWA 259
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLWKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 276 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 173 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 231
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 22 KATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
++ ++ D +N SKGYG++ T E A++A+ MN LL+ R +FV
Sbjct: 95 RSGVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 138
>gi|239611503|gb|EEQ88490.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327348484|gb|EGE77341.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ATCC
18188]
Length = 143
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L F ++G + +AT++ D NRS+G+G++ +++ EA A+ MN
Sbjct: 9 LAWHTTDETLRVGFEKYGTIEEATVVKDRDTNRSRGFGFVRFASDTEADTAMNAMNNQEF 68
Query: 61 DVRVIFVD 68
D RVI VD
Sbjct: 69 DGRVIRVD 76
>gi|301764797|ref|XP_002917810.1| PREDICTED: putative RNA-binding protein 3-like isoform 1
[Ailuropoda melanoleuca]
Length = 156
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T +ML D F+ G +T A ++ D RS+G+G++ ST EE+ +A+ +MN L+ +
Sbjct: 337 SVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANK 396
Query: 64 VIFV 67
IFV
Sbjct: 397 PIFV 400
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L D FS FG + ++ D S GYGY+ T E A A+ ++ ML+D + + V +
Sbjct: 143 LYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQVGH 202
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ LA AF ++G + K +I D RS+G+G++ E+A+ AL MN L
Sbjct: 12 LSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAKDALDAMNGKTL 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRAIRVD 79
>gi|417396785|gb|JAA45426.1| Putative mrna cleavage and polyadenylation factor i complex
subunit rna15 [Desmodus rotundus]
Length = 190
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|242055771|ref|XP_002457031.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
gi|241929006|gb|EES02151.1| hypothetical protein SORBIDRAFT_03g047450 [Sorghum bicolor]
Length = 146
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAFSQ+G V +I +SKG+G++ S+E +A AL +N +L
Sbjct: 66 LSYDTNETALKDAFSQYGDVIAVRVICHPTTGKSKGFGFVKFSSENQAAAALQKLNGQVL 125
Query: 61 DVRVIFVDYV 70
D R I V Y
Sbjct: 126 DGRNIRVHYA 135
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 310 LHFNITEDMLRGIFEPFGKIDNIQLIMDTDTGRSKGYGFITFHNADDAKKALEQLNGFEL 369
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V V T ASL
Sbjct: 370 AGRPMKVGNVTERLDVTTHASL 391
>gi|57899926|dbj|BAD87838.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 203
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAFSQ G + + +I +SKGYG++ ++E+EA AL M ++
Sbjct: 131 LSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVI 190
Query: 61 DVRVIFVDY 69
D R I V Y
Sbjct: 191 DGRNIRVHY 199
>gi|189500331|ref|YP_001959801.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189495772|gb|ACE04320.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 89
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + ++E L +AF +FG+V+ A II D RSKG+G++ + EA +A+ +N L
Sbjct: 8 LDYGVSEEDLREAFGEFGEVSSANIISDKFTGRSKGFGFVEMPNDAEANQAIDALNDTDL 67
Query: 61 DVRVIFVDYVRP 72
+ R I V+ RP
Sbjct: 68 NGRSIKVNQARP 79
>gi|302809382|ref|XP_002986384.1| hypothetical protein SELMODRAFT_49298 [Selaginella
moellendorffii]
gi|300145920|gb|EFJ12593.1| hypothetical protein SELMODRAFT_49298 [Selaginella
moellendorffii]
Length = 145
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT L DAFS +G V +A +++D RS+G+G++T E Q A+ M+ L
Sbjct: 9 LSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGMHGKDL 68
Query: 61 DVRVIFVDYVRP 72
D R I V +P
Sbjct: 69 DGRSITVSKAQP 80
>gi|444518692|gb|ELV12325.1| Putative RNA-binding protein 3 [Tupaia chinensis]
Length = 154
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|392593257|gb|EIW82582.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST + L +AF ++G VT + ++ D RS+G+G++T +T EEA A+ M++ L
Sbjct: 10 LSWSTGDDGLRNAFGRYGAVTDSIVMRDRETGRSRGFGFVTFTTAEEANAAMGQMDQTEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRTIRVN 77
>gi|302811189|ref|XP_002987284.1| hypothetical protein SELMODRAFT_37571 [Selaginella
moellendorffii]
gi|300144919|gb|EFJ11599.1| hypothetical protein SELMODRAFT_37571 [Selaginella
moellendorffii]
Length = 163
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST + L +F QFG++ +A +I+D G RS+G+G++T + + +A+ ++ L
Sbjct: 10 LSWSTDDQALESSFRQFGRILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDRLHNKEL 69
Query: 61 DVRVIFVDYVRP 72
D RV+ V+ P
Sbjct: 70 DGRVVTVNKALP 81
>gi|428671713|gb|EKX72628.1| RNA recognition motif domain containing protein [Babesia equi]
Length = 399
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT + L FSQFG+V A I D RSKG+G++T + + L K +L
Sbjct: 322 ISFDTTVQGLRAYFSQFGEVVDAYIPRDSYNQRSKGFGFLTFANKSSIHAVLEPNTKHVL 381
Query: 61 DVRVIFVDYV 70
D R + VDY
Sbjct: 382 DGRELVVDYA 391
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATII-MDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
++F T++ L + FS+FG V A N +KG+G+++ EE QK + ++
Sbjct: 129 IAFEATEDDLEEYFSKFGTVHDAYCPRQQNNSNLNKGFGFISFDNEEAIQKVFETVPHII 188
Query: 60 LDVRVIFVDYVRPNRHYNTDASLVRQPAQSP 90
+ VI VD ++++ + R+P+ P
Sbjct: 189 MGREVI-VDRATGQKYHSGAGGVNRRPSGQP 218
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S ++L D S FG + ++ D +N SKGYG++ T E A++A+ MN LL+ R
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+A+KA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 263
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S ++L D S FG + ++ D +N SKGYG++ T E A++A+ MN LL+ R
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + E L D FS+FG +T +++D RSKG G+++ ST EEA KAL +MN L+ +
Sbjct: 328 SFSDEKLKDLFSEFGTITSCKVMID-SNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRK 386
Query: 64 VIFV 67
++V
Sbjct: 387 PLYV 390
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D F+ FG V + +D +SKGYG++ EE AQ A+ +N ML++ +
Sbjct: 133 SIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDK 191
Query: 64 VIFVD-YVRPNRHYNTDAS 81
++V ++R T+ S
Sbjct: 192 QVYVGLFIRRQEREQTNGS 210
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLQKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S ++L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKVLYDTASAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|261205092|ref|XP_002627283.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
gi|239592342|gb|EEQ74923.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
Length = 143
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L F ++G + +AT++ D NRS+G+G++ +++ EA A+ MN
Sbjct: 9 LAWHTTDETLRVGFEKYGTIEEATVVKDRDTNRSRGFGFVRFASDTEADTAMNAMNNQEF 68
Query: 61 DVRVIFVD 68
D RVI VD
Sbjct: 69 DGRVIRVD 76
>gi|150007582|ref|YP_001302325.1| RNA-binding protein rbpA [Parabacteroides distasonis ATCC 8503]
gi|255013892|ref|ZP_05286018.1| putative RNA-binding protein rbpA [Bacteroides sp. 2_1_7]
gi|298375526|ref|ZP_06985483.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|410101874|ref|ZP_11296802.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
gi|423331931|ref|ZP_17309715.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|149936006|gb|ABR42703.1| putative RNA-binding protein rbpA [Parabacteroides distasonis
ATCC 8503]
gi|298268026|gb|EFI09682.1| glycine-rich RNA-binding protein 8 (Protein CCR1) [Bacteroides
sp. 3_1_19]
gi|409229772|gb|EKN22644.1| hypothetical protein HMPREF1075_01728 [Parabacteroides distasonis
CL03T12C09]
gi|409239672|gb|EKN32456.1| hypothetical protein HMPREF0999_00574 [Parabacteroides sp. D25]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 46/72 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + E L F+ +G++T A +IMD RS+G+G++ S +E A+KA+ ++N+
Sbjct: 8 LSYNISDEDLRLLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASY 67
Query: 61 DVRVIFVDYVRP 72
D +VI + RP
Sbjct: 68 DGKVINITEARP 79
>gi|340379888|ref|XP_003388457.1| PREDICTED: RNA-binding protein 24-like [Amphimedon queenslandica]
Length = 214
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+ + TT E L D F+QFG + +A +I D ++SKGYG++T +E+A+KA + N ++
Sbjct: 23 LPYHTTNETLYDFFAQFGDIEEAVVIHDRVTSKSKGYGFVTMKHKEDAEKACANPNPVI 81
>gi|260825257|ref|XP_002607583.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
gi|229292931|gb|EEN63593.1| hypothetical protein BRAFLDRAFT_71461 [Branchiostoma floridae]
Length = 183
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT E L FS++G++T +I D RS+G+G++T + + +A A M+ L
Sbjct: 15 LSWDTTSEGLESTFSEYGEITDCKVITDRETGRSRGFGFVTFANDSDAANAKKCMDGTEL 74
Query: 61 DVRVIFVDYV 70
D R I VDY
Sbjct: 75 DSRQIRVDYA 84
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLQKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|302815033|ref|XP_002989199.1| hypothetical protein SELMODRAFT_37572 [Selaginella
moellendorffii]
gi|300143099|gb|EFJ09793.1| hypothetical protein SELMODRAFT_37572 [Selaginella
moellendorffii]
Length = 166
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST + L +F QFG++ +A +I+D G RS+G+G++T + + +A+ ++ L
Sbjct: 10 LSWSTDDQALESSFRQFGRILEAKVIIDRGSGRSRGFGFVTFADQRAMDEAIDRLHNKEL 69
Query: 61 DVRVIFVDYVRP 72
D RV+ V+ P
Sbjct: 70 DGRVVTVNKALP 81
>gi|121583453|ref|YP_973884.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596707|gb|ABM40142.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 150
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ E L +F QFG VT A ++M+ RSKG+G++ + + +AQ A+ MN L
Sbjct: 10 LPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSITVNEARP 81
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 276 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 333
Query: 64 VIFV 67
+FV
Sbjct: 334 KVFV 337
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 475 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 532
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 372 ERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 430
>gi|427387936|ref|ZP_18883921.1| hypothetical protein HMPREF9447_04954 [Bacteroides oleiciplenus
YIT 12058]
gi|425725335|gb|EKU88208.1| hypothetical protein HMPREF9447_04954 [Bacteroides oleiciplenus
YIT 12058]
Length = 94
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T L + FS +G+ + A +IMD RS+G+G++ + + E QKA+ ++N
Sbjct: 8 LSFGTNDADLNELFSAYGETSSAKVIMDRETGRSRGFGFVEMTNDAEGQKAIDELNGAEY 67
Query: 61 DVRVIFVDYVRP------NRHYNT 78
D + I V RP N YN+
Sbjct: 68 DQKTISVTVARPREERPRNNGYNS 91
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYV 263
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S ++L D S FG + ++ D +N SKGYG++ T E A++A+ MN LL+ R
Sbjct: 109 SINNKVLYDTVSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGTLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + E L D FS+FG +T +++D RSKG G+++ ST EEA KAL +MN L+ +
Sbjct: 328 SFSDEKLKDLFSEFGTITSCKVMID-SNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRK 386
Query: 64 VIFV 67
++V
Sbjct: 387 PLYV 390
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D F+ FG V + +D +SKGYG++ EE AQ A+ +N ML++ +
Sbjct: 133 SIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDK 191
Query: 64 VIFVD-YVRPNRHYNTDAS 81
++V ++R T+ S
Sbjct: 192 QVYVGLFIRRQEREQTNGS 210
>gi|91086635|ref|XP_966565.1| PREDICTED: similar to U11/U12 snRNP 35K [Tribolium castaneum]
gi|270009757|gb|EFA06205.1| hypothetical protein TcasGA2_TC009054 [Tribolium castaneum]
Length = 194
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TTK+ + D FS++G + + ++ DI KGY ++ E +A++A NKM +
Sbjct: 63 LSLKTTKDTIKDIFSKYGPLRRFRLVKDIVTGMPKGYAFIEYENELDAEEAYCKANKMNI 122
Query: 61 DVRVIFVDY 69
D +IFVD+
Sbjct: 123 DGNIIFVDF 131
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|338729124|ref|XP_003365829.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Equus
caballus]
Length = 135
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|332142478|ref|YP_004428216.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str.
'Deep ecotype']
gi|410862690|ref|YP_006977924.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
gi|327552500|gb|AEA99218.1| hypothetical protein MADE_1015430 [Alteromonas macleodii str.
'Deep ecotype']
gi|410819952|gb|AFV86569.1| hypothetical protein amad1_15375 [Alteromonas macleodii AltDE1]
Length = 117
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T+E L D F +FG + ++MD N SKG+G++ ST+EE KA+ +N ++D +
Sbjct: 11 SFTQENLEDLFFEFGTIASCDLVMDEATNLSKGFGFVEMSTQEETDKAIEKLNAKVIDGK 70
Query: 64 VIFVDY 69
I V +
Sbjct: 71 KIRVKW 76
>gi|407262829|ref|XP_003945671.1| PREDICTED: putative RNA-binding protein 3-like [Mus musculus]
Length = 154
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|53714011|ref|YP_100003.1| RNA-binding protein [Bacteroides fragilis YCH46]
gi|60682207|ref|YP_212351.1| RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|265764361|ref|ZP_06092929.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|336410386|ref|ZP_08590866.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|375359004|ref|YP_005111776.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|423250510|ref|ZP_17231526.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|423256011|ref|ZP_17236940.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|423271876|ref|ZP_17250846.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|423276340|ref|ZP_17255281.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|423283895|ref|ZP_17262779.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
gi|52216876|dbj|BAD49469.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
gi|60493641|emb|CAH08430.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
gi|263256969|gb|EEZ28315.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163685|emb|CBW23239.1| putative RNA-binding protein [Bacteroides fragilis 638R]
gi|335945442|gb|EGN07255.1| hypothetical protein HMPREF1018_02883 [Bacteroides sp. 2_1_56FAA]
gi|392650093|gb|EIY43765.1| hypothetical protein HMPREF1067_03584 [Bacteroides fragilis
CL03T12C07]
gi|392652819|gb|EIY46477.1| hypothetical protein HMPREF1066_02536 [Bacteroides fragilis
CL03T00C08]
gi|392696732|gb|EIY89924.1| hypothetical protein HMPREF1079_03928 [Bacteroides fragilis
CL05T00C42]
gi|392697381|gb|EIY90566.1| hypothetical protein HMPREF1080_03934 [Bacteroides fragilis
CL05T12C13]
gi|404580441|gb|EKA85150.1| hypothetical protein HMPREF1204_02317 [Bacteroides fragilis HMW
615]
Length = 122
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F +FG+V A I+MD RSKG+G++ +EE A+ +N+ +
Sbjct: 8 ISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKEI 67
Query: 61 DVRVIFVDYVRP 72
D + + V RP
Sbjct: 68 DGKTLAVSVARP 79
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|356558254|ref|XP_003547422.1| PREDICTED: cold-inducible RNA-binding protein-like [Glycine max]
Length = 86
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT+E L FS FG VT+A + +D R KG+G+++ +E EA+KAL MN ++ R+
Sbjct: 18 TTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKALRAMNGRIVSGRL 77
Query: 65 IFVD 68
I V+
Sbjct: 78 ILVE 81
>gi|400260942|pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 At Ph 6.0
gi|400260943|pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 A Ph 9.0
Length = 115
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 16 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73
Query: 64 VIFV 67
+FV
Sbjct: 74 KVFV 77
>gi|400260922|pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
gi|400260925|pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 114 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171
Query: 64 VIFV 67
+FV
Sbjct: 172 KVFV 175
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVELMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|256086132|ref|XP_002579259.1| nucleolysin tia-1 [Schistosoma mansoni]
gi|353232225|emb|CCD79580.1| putative nucleolysin tia-1 [Schistosoma mansoni]
Length = 547
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T+ II D+ + KGYG++ +T +EA++A+ MN ++ R I
Sbjct: 47 ETLLAAFSNFGTITECKIIKDMHTQKPKGYGFVAYATRQEAERAIRIMNGQIIGTRAIRT 106
Query: 68 DY 69
++
Sbjct: 107 NW 108
>gi|258564224|ref|XP_002582857.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908364|gb|EEP82765.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 146
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L + FS++G + +A ++ D NRS+G+G++ ++E EA A+ M+
Sbjct: 9 LAWHTTDETLREGFSKYGTIEEAIVVKDRDTNRSRGFGFVRFASEAEADAAMNAMSNQEF 68
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 69 DGRMIRVD 76
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E L AF ++G V A ++ D +S+GYG++ ST+EE + AL +N + L
Sbjct: 205 LSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGVEL 264
Query: 61 DVRVIFV 67
+ R + V
Sbjct: 265 EGRALRV 271
>gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding protein [Hordeum vulgare subsp.
vulgare]
Length = 173
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L AFSQ+G++ A II D RS+G+G++T +EE ++A+ +MN L
Sbjct: 13 LAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAIEEMNGKEL 72
Query: 61 DVRVIFVDYVRPNR 74
D R + V+ + R
Sbjct: 73 DGRQVTVNEAQSRR 86
>gi|384491610|gb|EIE82806.1| hypothetical protein RO3G_07511 [Rhizopus delemar RA 99-880]
Length = 249
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D F +FG + K TI+ D NRS+G+G++ + +A +A +N M +
Sbjct: 121 LSLRTREADLEDVFHEFGTIEKVTIVYDHRTNRSRGFGFVYFKDQADASRARDALNGMDI 180
Query: 61 DVRVIFVDY 69
D R I VDY
Sbjct: 181 DERKIRVDY 189
>gi|225175153|ref|ZP_03729149.1| RNP-1 like RNA-binding protein [Dethiobacter alkaliphilus AHT 1]
gi|225169329|gb|EEG78127.1| RNP-1 like RNA-binding protein [Dethiobacter alkaliphilus AHT 1]
Length = 82
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +STT++ L + FS+ GQV A II + RSKGYG++ EE+A+K +++MN L
Sbjct: 10 IPWSTTEDQLREYFSEHGQVLNARIITERATGRSKGYGFV-EVPEEDAEK-MIEMNGTEL 67
Query: 61 DVRVIFVDYVRP 72
+ R + V+ +P
Sbjct: 68 EGRKLVVNEAKP 79
>gi|423256816|ref|ZP_17237739.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|423266219|ref|ZP_17245222.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
gi|387778292|gb|EIK40387.1| hypothetical protein HMPREF1055_00016 [Bacteroides fragilis
CL07T00C01]
gi|392701574|gb|EIY94732.1| hypothetical protein HMPREF1056_02909 [Bacteroides fragilis
CL07T12C05]
Length = 118
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F +FG+V A I+MD RSKG+G++ +EE A+ +N+ +
Sbjct: 8 ISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKEI 67
Query: 61 DVRVIFVDYVRP 72
D + + V RP
Sbjct: 68 DGKTLAVSVARP 79
>gi|66576254|gb|AAY51685.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T+ L+ AF +FG V+KA +I+D RSKG+G++ + EA +A+ +N+ L
Sbjct: 8 LDYNVTEADLSGAFGEFGTVSKANVIIDKFTGRSKGFGFVEMPDDAEANEAISQLNESSL 67
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSPK 91
+ R I V+ +P +PA P+
Sbjct: 68 NGRKIRVNEAKPREE---------RPAARPR 89
>gi|189345649|ref|YP_001942178.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
gi|189339796|gb|ACD89199.1| RNP-1 like RNA-binding protein [Chlorobium limicola DSM 245]
Length = 90
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S T++ L D FSQFGQV A II D RSKG+G++ + EA++A+ MN L
Sbjct: 8 LPYSVTEDDLRDVFSQFGQVDSANIITDKFSGRSKGFGFVDMPIDGEAREAIESMNDKDL 67
Query: 61 DVRVIFVD 68
R I V+
Sbjct: 68 KGRTIKVN 75
>gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L++AFSQ+G++ ++ II D RS+G+G++T E+ + A+ MN L
Sbjct: 15 LAWATTDQSLSEAFSQYGEILESKIINDRETGRSRGFGFVTFKDEQSMRDAIEGMNGQTL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans
CJ2]
Length = 148
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ E L +F QFG VT A ++M+ RSKG+G++ + + +AQ A+ MN L
Sbjct: 10 LPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAINGMNGQPL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSITVNEARP 81
>gi|406964974|gb|EKD90666.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 118
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ FS T E L + F ++G V+ A IIMD N+SKG+ ++ + EAQ A+ +++ L
Sbjct: 9 IPFSLTNEKLKELFEKYGTVSSAQIIMDKYTNQSKGFAFVEMPNDTEAQTAIKELDGFGL 68
Query: 61 DVRVIFVDYVRP 72
+ R I V RP
Sbjct: 69 EGRKIGVSVARP 80
>gi|377345277|emb|CCG00961.1| protein containing RNA recognition motif domain [uncultured
Flavobacteriia bacterium]
Length = 102
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + T+E L F Q+G+V TI+ D+ + KGYG++ S+ E QKA++ +N +
Sbjct: 8 IDYKITEEELQALFEQYGEVKSVTILKDMDDQKPKGYGFVLMSSNYEGQKAILSLNNKKI 67
Query: 61 DVRVIFVDYVRP 72
+ R + V RP
Sbjct: 68 NDRSLSVQEARP 79
>gi|170071297|ref|XP_001869868.1| splicing factor [Culex quinquefasciatus]
gi|167867202|gb|EDS30585.1| splicing factor [Culex quinquefasciatus]
Length = 524
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 274 LHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFEL 333
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V V T ASL
Sbjct: 334 AGRPMKVGNVTERLDVTTHASL 355
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|281353659|gb|EFB29243.1| hypothetical protein PANDA_006181 [Ailuropoda melanoleuca]
Length = 148
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D + S+G+G++ T E AQ+A+V MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--NHGSRGFGFVHFETHEAAQQAIVTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FSQFG++ ++ D S+G+G++ EEAQKA+ DMN + R+++V
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYV 263
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDEKLRREFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 294 LHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFEL 353
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V V T ASL
Sbjct: 354 AGRPMKVGNVTERLDVTTHASL 375
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E+L AF ++G V A ++ D RS+GYG++ ST+ E + A+ +N + L
Sbjct: 51 LSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVEL 110
Query: 61 DVRVIFVDYVRPNR 74
+ R + V + R
Sbjct: 111 EGRAMRVSLAQGKR 124
>gi|291407441|ref|XP_002719942.1| PREDICTED: RNA binding motif protein 3 [Oryctolagus cuniculus]
Length = 155
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 305 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++MD G RSKG+G++ S+ EEA KA+ DMN ++ + ++V
Sbjct: 301 ERLRKEFSVFGTITSAKVMMDDG--RSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYV 358
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + + D FS FG + + D +SKGYG++ E+ A +++ +N MLL+ +
Sbjct: 100 SIDNKAMYDTFSAFGNILSCKVAQD-ETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGK 158
Query: 64 VIFV 67
+FV
Sbjct: 159 KVFV 162
>gi|440804413|gb|ELR25290.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 146
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST L AF Q G+V A +I+D +S+G+G++T S+ +EA+ A +N+ L
Sbjct: 10 LSWSTDDNSLRSAFEQHGEVIDAKVILDRDTGKSRGFGFVTFSSADEAEAAKGALNQTDL 69
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 70 DGREIRVD 77
>gi|255553947|ref|XP_002518014.1| RNA binding protein, putative [Ricinus communis]
gi|223542996|gb|EEF44532.1| RNA binding protein, putative [Ricinus communis]
Length = 267
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+++ T KE L + F QFG++ +A +I D RSKGYG++T E A++A VD + ++
Sbjct: 26 LAWETHKETLKNYFQQFGEILEAVVIFDKNTGRSKGYGFVTFKEAEAARRACVDSSPVI 84
>gi|223936242|ref|ZP_03628155.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223895104|gb|EEF61552.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 103
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+ + D FS G V + +IMD R++G+G++T +T E A+ A+ D+N
Sbjct: 10 LSFKATENDIQDLFSAHGPVNEVNLIMDKMTGRARGFGFVTMATAEGAEAAIADLNGKEW 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 QGRALTVNEARP 81
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|426257071|ref|XP_004022158.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Ovis aries]
gi|426257073|ref|XP_004022159.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Ovis aries]
gi|426257075|ref|XP_004022160.1| PREDICTED: putative RNA-binding protein 3 isoform 3 [Ovis aries]
gi|426257077|ref|XP_004022161.1| PREDICTED: putative RNA-binding protein 3 isoform 4 [Ovis aries]
gi|426257079|ref|XP_004022162.1| PREDICTED: putative RNA-binding protein 3 isoform 5 [Ovis aries]
Length = 160
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T + L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 199 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 256
Query: 64 VIFV 67
+FV
Sbjct: 257 KVFV 260
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 295 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 353
>gi|260656096|pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 22 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 79
Query: 64 VIFV 67
+FV
Sbjct: 80 KVFV 83
>gi|302926643|ref|XP_003054335.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
gi|256735276|gb|EEU48622.1| hypothetical protein NECHADRAFT_74951 [Nectria haematococca mpVI
77-13-4]
Length = 178
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 2 SFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD 61
S+ T + L F +FG V +A ++ D RS+G+G++ + E +AQKA+ MN + D
Sbjct: 13 SWHTEEGTLRQKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYTQEGDAQKAIATMNNVEFD 72
Query: 62 VRVIFVD 68
R I VD
Sbjct: 73 GRTIRVD 79
>gi|42567949|ref|NP_197404.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332005259|gb|AED92642.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 172
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S ++ L FS+FGQVT II + +S GYGY+ +++E+AQ A+ MN D R
Sbjct: 87 SVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGR 146
Query: 64 VIFVDYVRPN 73
I V + +P
Sbjct: 147 FILVKFGQPG 156
>gi|6137350|pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137351|pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137352|pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137353|pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137354|pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137355|pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137356|pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
gi|6137357|pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta
africana]
Length = 154
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|298248970|ref|ZP_06972774.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297546974|gb|EFH80841.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 104
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+ +T++ L F Q GQVT AT+I D RSKG+G++ S+++E + A+ +N L
Sbjct: 10 YQSTEQDLIQLFEQIGQVTSATVITDRETGRSKGFGFVEMSSDDETRAAIEQLNGSTLGD 69
Query: 63 RVIFVDYVRPNR 74
R I V+ R R
Sbjct: 70 RTITVNEARERR 81
>gi|55778182|gb|AAH86491.1| Rbm3 protein [Mus musculus]
Length = 128
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|359807285|ref|NP_001240860.1| uncharacterized protein LOC100815224 [Glycine max]
gi|255645181|gb|ACU23088.1| unknown [Glycine max]
Length = 208
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST+ L D F +FG++ +A +++D RS+G+G++T ++ +A+ MN + L
Sbjct: 14 LAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKAMDEAIDAMNGIDL 73
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D R I VD +P + D
Sbjct: 74 DGRTITVDRAQPQQGSTRD 92
>gi|388566786|ref|ZP_10153228.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
gi|388265964|gb|EIK91512.1| RNA recognition motif-containing protein [Hydrogenophaga sp. PBC]
Length = 133
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ E L AFS FG V A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYTVRDEDLQQAFSAFGAVNSAKVMMERETGRSKGFGFVEMGSDSEAQSAIQGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRSLVVNEARP 81
>gi|302791061|ref|XP_002977297.1| hypothetical protein SELMODRAFT_107195 [Selaginella
moellendorffii]
gi|300154667|gb|EFJ21301.1| hypothetical protein SELMODRAFT_107195 [Selaginella
moellendorffii]
Length = 180
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT L AF +G + +A ++ D NRS+G+G++T EE + A+ M+ L
Sbjct: 12 LSWSTTDRSLETAFRPYGSIIEAKVVFDRETNRSRGFGFVTFEDEESMENAIRKMHNQEL 71
Query: 61 DVRVIFVDYVRPNR 74
+ R I V P R
Sbjct: 72 EGRSITVSKAEPPR 85
>gi|452986364|gb|EME86120.1| hypothetical protein MYCFIDRAFT_52503 [Pseudocercospora fijiensis
CIRAD86]
Length = 482
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ EA+KAL M+ L R I
Sbjct: 187 EVLLQAFSAFGNVSEARVMWDMKTGRSRGYGFVAFRDRGEAEKALSSMDGEWLGSRAIRC 246
Query: 68 DYV 70
++
Sbjct: 247 NWA 249
>gi|9293999|dbj|BAB01902.1| unnamed protein product [Arabidopsis thaliana]
Length = 396
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN-KML 59
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE A AL +MN K+
Sbjct: 289 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKVN 348
Query: 60 LDVR 63
LD R
Sbjct: 349 LDFR 352
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM
44963]
Length = 109
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+ +T++ L F Q GQVT AT+I D RSKG+G++ S+++EA+ A+ +N L
Sbjct: 10 YQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIEQLNGSTLGN 69
Query: 63 RVIFVDYVRPNR 74
R I V+ R R
Sbjct: 70 RTITVNEARERR 81
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 129 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 186
Query: 64 VIFV 67
+FV
Sbjct: 187 KVFV 190
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 328 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 385
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 225 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 124 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 181
Query: 64 VIFV 67
+FV
Sbjct: 182 KVFV 185
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 323 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 380
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 220 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 278
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Query: 64 VIFVDYVR 71
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L F+ +G +T A ++ D G S+G+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDEKLRKEFAPYGTITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F++FG+ ++ D + RS+G+G++ +A++A+ +MN L+ RV++V
Sbjct: 205 EKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+ ML FS GQ+ + D+ RS GY Y+ +A+ AL MN ++ R I
Sbjct: 23 TEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPI 82
Query: 66 FVDY 69
+ +
Sbjct: 83 RIMW 86
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ E L +F FG +T A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSITVNEARP 81
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ E L +F FG +T A ++M+ RSKG+G++ ++ EAQ A+ MN L
Sbjct: 10 LPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGMNGQSL 69
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 70 GGRSITVNEARP 81
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 129 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 186
Query: 64 VIFV 67
+FV
Sbjct: 187 KVFV 190
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 328 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 385
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 225 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 283
>gi|154175004|ref|YP_001407864.1| nicotinate phosphoribosyltransferase [Campylobacter curvus
525.92]
gi|402547017|ref|ZP_10843890.1| hypothetical protein HMPREF1139_0586 [Campylobacter sp. FOBRC14]
gi|153793162|gb|EAU00743.2| nicotinate phosphoribosyltransferase [Campylobacter curvus
525.92]
gi|401016852|gb|EJP75615.1| hypothetical protein HMPREF1139_0586 [Campylobacter sp. FOBRC14]
Length = 65
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
+ +AF+QFG+V +A I+ D NRSKG+G++ E Q+A+ +N L R + V+
Sbjct: 1 MKEAFAQFGEVKRAKIVKDRDTNRSKGFGFVEMDDANEGQRAIDALNDKELGGRTLRVNE 60
Query: 70 VRP 72
RP
Sbjct: 61 ARP 63
>gi|449279308|gb|EMC86943.1| U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Columba
livia]
Length = 254
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ TT+E L +AFS++G + K ++ D+ SKGY ++ E KA D N++++
Sbjct: 58 LNLQTTEEKLKEAFSRYGDIRKIRLVRDLVTGFSKGYAFIEYKEERALLKAHRDANRLVI 117
Query: 61 DVRVIFVDY 69
D IFVD+
Sbjct: 118 DQHEIFVDF 126
>gi|406959178|gb|EKD86596.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
LA+ F+Q G V A ++ D RS+G+G++ ST+EEAQ A+ ++N ++ R I V+
Sbjct: 15 LAELFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNLNGTDVEGRKIVVNI 74
Query: 70 VRP 72
RP
Sbjct: 75 ARP 77
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 154 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 211
Query: 64 VIFV 67
+FV
Sbjct: 212 KVFV 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 353 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 410
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+A+KA+ +MN L+ + I+V
Sbjct: 250 ERLKDLFGKFGPALSVKVVTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYV 308
>gi|452845910|gb|EME47843.1| hypothetical protein DOTSEDRAFT_167231 [Dothistroma septosporum
NZE10]
Length = 500
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ EA+KAL M+ L R I
Sbjct: 189 EVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVAYRDRGEAEKALSSMDGEWLGSRAIRC 248
Query: 68 DYV 70
++
Sbjct: 249 NWA 251
>gi|346469013|gb|AEO34351.1| hypothetical protein [Amblyomma maculatum]
Length = 139
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT E L +AF++FG+V A ++ D SKG+G++ +T E+A + + M+ LD V
Sbjct: 47 TTTEGLREAFAKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAEGIKGMDGKFLDGWV 106
Query: 65 IFVDY 69
IF +Y
Sbjct: 107 IFAEY 111
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAANRAIETMNGMLLNDR 166
Query: 64 VIFVDYVR 71
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L F+ +G +T A ++ D G S+G+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDEKLRKEFAPYGTITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F++FG+ ++ D + RS+G+G++ +A++A+ +MN L+ RV++V
Sbjct: 205 EKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYV 263
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+ ML FS GQ+ + D+ RS GY Y+ +A+ AL MN ++ R I
Sbjct: 23 TEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTMNYEVIKGRPI 82
Query: 66 FVDY 69
+ +
Sbjct: 83 RIMW 86
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 113 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 170
Query: 64 VIFV 67
+FV
Sbjct: 171 KVFV 174
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 312 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 369
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 209 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 267
>gi|198431578|ref|XP_002128542.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein A3
[Ciona intestinalis]
Length = 334
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVD----MN 56
+S+ TT E + D FS++G++ +I D RSKG+G++T TE EA + D +N
Sbjct: 20 ISYETTDESMNDYFSKYGKIEDCVVIKDSSTGRSKGFGFVTFETEAEADACMDDRPHTLN 79
Query: 57 KMLLDVR--VIFVDYVRPNRHY 76
+DV+ V + V+P H+
Sbjct: 80 SRQIDVKRAVSREESVKPGAHF 101
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 305 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML DAF Q G V A ++ D RS+GYG++ ST+EE +A+ +N +
Sbjct: 231 LSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEI 290
Query: 61 DVRVIFVDYVRPNRH 75
+ R I V+ R+
Sbjct: 291 EGREIRVNLALGKRY 305
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 38 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 95
Query: 64 VIFV 67
+FV
Sbjct: 96 KVFV 99
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + +V
Sbjct: 237 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYV 294
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 134 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
>gi|304376936|gb|ACI70007.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 82
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E LA+AF+++G + K +I D RS+G+G++ E+A+ AL MN +
Sbjct: 12 LSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALDGMNGKSV 71
Query: 61 DVRVIFV 67
D+ + V
Sbjct: 72 DLMIFVV 78
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIKKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGAALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 305 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|452989554|gb|EME89309.1| hypothetical protein MYCFIDRAFT_149907 [Pseudocercospora fijiensis
CIRAD86]
Length = 500
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ +E L F +FG++ II D RSKG+GY+ E+A KAL N L
Sbjct: 252 LSWNVDEEWLTREFEEFGELKGVRIITDRDSGRSKGFGYVEFENAEDAAKALEAKNGAEL 311
Query: 61 DVRVIFVDYVRPNRH 75
D R I +D+ P ++
Sbjct: 312 DNRAIRLDFSVPRQN 326
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T++M+ + F + G + + D KG+GY+ + +EA+ A + L
Sbjct: 358 LSFDATEDMVREYFEEHGSINGIRLPTDRESGAPKGFGYVEMGSIDEAKAAYEALQGADL 417
Query: 61 DVRVIFVDYVRP 72
R + +DY P
Sbjct: 418 GGRPMRLDYSTP 429
>gi|390342940|ref|XP_001198098.2| PREDICTED: RNA-binding protein 39-like [Strongylocentrotus
purpuratus]
Length = 666
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T+ ML F FG++ ++MD NRSKGYG++T E+A++AL +N L
Sbjct: 312 LHYNITEAMLRGIFEPFGKIDNIQLMMDTDANRSKGYGFITFHDAEDAKRALDQLNGFEL 371
Query: 61 DVRVIFVDYV 70
R + V++V
Sbjct: 372 AGRPMKVNHV 381
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
L + FS G+V II D RSKG GY+ + AL N+ LL V +I
Sbjct: 224 LKEFFSSVGKVRTVKIITDRNSRRSKGVGYVEYDVADSVPLALGLNNQKLLGVPII 279
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|218847772|ref|NP_001136383.1| small nuclear ribonucleoprotein 35kDa (U11/U12) [Xenopus (Silurana)
tropicalis]
gi|195539787|gb|AAI67878.1| Unknown (protein for MGC:135224) [Xenopus (Silurana) tropicalis]
Length = 264
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+E L + FS++G + + ++ D SKGY ++ E KA D NK+++
Sbjct: 58 LSQQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVI 117
Query: 61 DVRVIFVDY 69
D R IFVD+
Sbjct: 118 DQREIFVDF 126
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 305 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 362
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|223974749|gb|ACN31562.1| unknown [Zea mays]
Length = 326
Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STEE + A+ MN L
Sbjct: 15 LAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRNAIEGMNGKEL 74
Query: 61 DVRVIFVDYVRPNR 74
D R I V+ + R
Sbjct: 75 DGRNITVNEAQFRR 88
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|302780311|ref|XP_002971930.1| hypothetical protein SELMODRAFT_172546 [Selaginella
moellendorffii]
gi|300160229|gb|EFJ26847.1| hypothetical protein SELMODRAFT_172546 [Selaginella
moellendorffii]
Length = 173
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT L AF +G + +A ++ D NRS+G+G++T EE + A+ M+ L
Sbjct: 12 LSWSTTDRSLETAFRPYGSIIEAKVVFDRETNRSRGFGFVTFEDEESMENAIRKMHNQEL 71
Query: 61 DVRVIFVDYVRPNR 74
+ R I V P R
Sbjct: 72 EGRSITVSKAEPPR 85
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 155 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 212
Query: 64 VIFV 67
+FV
Sbjct: 213 KVFV 216
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 354 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 411
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD 61
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+
Sbjct: 38 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLN 93
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 251 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 309
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|405963791|gb|EKC29337.1| RNA-binding protein 39 [Crassostrea gigas]
Length = 557
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ +I D NRS+GYG++T E+A+KAL +N L
Sbjct: 267 LHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFHDSEDAKKALEQLNGFEL 326
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 327 AGRPMKVGHV 336
>gi|302814001|ref|XP_002988685.1| hypothetical protein SELMODRAFT_18499 [Selaginella
moellendorffii]
gi|300143506|gb|EFJ10196.1| hypothetical protein SELMODRAFT_18499 [Selaginella
moellendorffii]
Length = 135
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT L DAFS +G V +A +++D RS+G+G++T E Q A+ M+ L
Sbjct: 15 LSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAIDGMHGKDL 74
Query: 61 DVRVIFVDYVRP 72
D R I V +P
Sbjct: 75 DGRSITVSKAQP 86
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 38 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 95
Query: 64 VIFV 67
+FV
Sbjct: 96 KVFV 99
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 237 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 294
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 134 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D G +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|337281471|ref|YP_004620943.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis
TTB310]
gi|334732548|gb|AEG94924.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 128
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
+ AFSQFG V+ A ++M+ RSKG+G++ S+ EAQ A+ MN + R + V+
Sbjct: 19 MEQAFSQFGTVSSAKVMMERDTGRSKGFGFVEMSSPAEAQAAIEGMNGQQIGGRGLVVNE 78
Query: 70 VRP 72
RP
Sbjct: 79 ARP 81
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 38 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 95
Query: 64 VIFV 67
+FV
Sbjct: 96 KVFV 99
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 237 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 294
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 134 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 192
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT++ L + FSQFG VT + II D SKG+G++ ST+EEA A+ N
Sbjct: 10 LSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITGTNGHEF 69
Query: 61 DVRVIFVDYV--RPNR 74
+ R + V+ +P R
Sbjct: 70 EGRQLRVNEAMDKPRR 85
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|259490527|ref|NP_001159310.1| uncharacterized protein LOC100304402 [Zea mays]
gi|223943329|gb|ACN25748.1| unknown [Zea mays]
gi|413938710|gb|AFW73261.1| chloroplast protein synthesis 4 [Zea mays]
Length = 398
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE AL MN ++
Sbjct: 306 LSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQII 365
Query: 61 DVRVIFVDYVR 71
+ +I VD +
Sbjct: 366 NGWMIVVDVAK 376
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 6 LYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 61
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 199 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 256
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 96 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 154
>gi|313147463|ref|ZP_07809656.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|423277773|ref|ZP_17256687.1| hypothetical protein HMPREF1203_00904 [Bacteroides fragilis HMW
610]
gi|424663907|ref|ZP_18100944.1| hypothetical protein HMPREF1205_04293 [Bacteroides fragilis HMW
616]
gi|313136230|gb|EFR53590.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|404577597|gb|EKA82335.1| hypothetical protein HMPREF1205_04293 [Bacteroides fragilis HMW
616]
gi|404586970|gb|EKA91529.1| hypothetical protein HMPREF1203_00904 [Bacteroides fragilis HMW
610]
Length = 122
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F +FG+V A I+MD RSKG+G++ +EE A+ +N+ +
Sbjct: 8 ISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALNEKEI 67
Query: 61 DVRVIFVDYVRP 72
D + + V RP
Sbjct: 68 DGKTLSVSVARP 79
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E L AF ++G V A ++ D +S+GYG++ ST+ E Q ALV ++ + L
Sbjct: 205 LSWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVEL 264
Query: 61 DVRVIFV 67
+ R + V
Sbjct: 265 EGRALRV 271
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 145 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 202
Query: 64 VIFV 67
+FV
Sbjct: 203 KVFV 206
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 344 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 401
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 241 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 299
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S T++ L + F QFG V+ +++D RSKG+ ++ S +EE + A+ +N L
Sbjct: 8 LPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKLNGHEL 67
Query: 61 DVRVIFVDYVRP 72
D R I V+ +P
Sbjct: 68 DGRTIVVNKAKP 79
>gi|297598418|ref|NP_001045556.2| Os01g0974600 [Oryza sativa Japonica Group]
gi|215768629|dbj|BAH00858.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619969|gb|EEE56101.1| hypothetical protein OsJ_04953 [Oryza sativa Japonica Group]
gi|255674125|dbj|BAF07470.2| Os01g0974600 [Oryza sativa Japonica Group]
Length = 116
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAFSQ G + + +I +SKGYG++ ++E+EA AL M ++
Sbjct: 44 LSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVI 103
Query: 61 DVRVIFVDY 69
D R I V Y
Sbjct: 104 DGRNIRVHY 112
>gi|17537143|ref|NP_496718.1| Protein TIAR-2 [Caenorhabditis elegans]
gi|6425313|emb|CAB60356.1| Protein TIAR-2 [Caenorhabditis elegans]
Length = 434
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L +AF +FG+V++A II D N+ KGYG+++ E+A++A+ +MN L R I ++
Sbjct: 148 LREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNW 207
Query: 70 V 70
Sbjct: 208 A 208
>gi|431893576|gb|ELK03439.1| Putative RNA-binding protein 3 [Pteropus alecto]
Length = 213
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 70 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 129
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 130 DGRQIRVDHA 139
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 44 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 101
Query: 64 VIFV 67
+FV
Sbjct: 102 KVFV 105
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + +V
Sbjct: 243 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYV 300
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 140 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 198
>gi|327271618|ref|XP_003220584.1| PREDICTED: RNA-binding protein 39-like [Anolis carolinensis]
Length = 578
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 313 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 372
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 373 AGRPMKVGHV 382
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 45 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 102
Query: 64 VIFV 67
+FV
Sbjct: 103 KVFV 106
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 244 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 141 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 45 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 102
Query: 64 VIFV 67
+FV
Sbjct: 103 KVFV 106
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 244 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 301
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 141 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 199
>gi|355757333|gb|EHH60858.1| RNA-binding motif protein 3 [Macaca fascicularis]
Length = 157
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYV 365
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D S FG V ++ D +N SKGYG++ T E A++A+ MN + L+
Sbjct: 109 SINNKALYDTVSAFGNVLSCKVVCD--ENGSKGYGFVHFGTREAAERAIEKMNGIPLNDC 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYV 263
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 72 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 129
Query: 64 VIFV 67
+FV
Sbjct: 130 KVFV 133
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 271 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 328
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 168 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 226
>gi|413938711|gb|AFW73262.1| chloroplast protein synthesis 4 [Zea mays]
Length = 400
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TEE AL MN ++
Sbjct: 308 LSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKAMNGQII 367
Query: 61 DVRVIFVDYVR 71
+ +I VD +
Sbjct: 368 NGWMIVVDVAK 378
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYV 365
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|209735756|gb|ACI68747.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 81
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF TT+E LA+AF+++G + K +I D RS+G+G++ E+A+ AL MN +
Sbjct: 12 LSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAKDALEGMNGKSV 71
Query: 61 DVRVIFV 67
D +IFV
Sbjct: 72 D--LIFV 76
>gi|147900472|ref|NP_001086350.1| MGC81970 protein [Xenopus laevis]
gi|49522239|gb|AAH75146.1| MGC81970 protein [Xenopus laevis]
Length = 512
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 230 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 289
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 290 AGRPMKVGHV 299
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 50 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 107
Query: 64 VIFV 67
+FV
Sbjct: 108 KVFV 111
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 249 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 306
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 146 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 204
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 84 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 141
Query: 64 VIFV 67
+FV
Sbjct: 142 KVFV 145
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 283 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 340
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 180 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 238
>gi|332255488|ref|XP_003276864.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Nomascus
leucogenys]
Length = 157
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|312130254|ref|YP_003997594.1| rnp-1 like RNA-binding protein [Leadbetterella byssophila DSM
17132]
gi|311906800|gb|ADQ17241.1| RNP-1 like RNA-binding protein [Leadbetterella byssophila DSM
17132]
Length = 90
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L AF ++G V A +I D RSKG+G++ + EAQ A+ +N+ L
Sbjct: 8 LNYDTTDDTLLGAFQEYGAVDSAKVIFDKFTGRSKGFGFVEMPNDAEAQAAINGLNETEL 67
Query: 61 DVRVIFVDYVRP 72
D R I V P
Sbjct: 68 DGRTIVVKVAEP 79
>gi|432858816|ref|XP_004068953.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Oryzias latipes]
Length = 529
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 259 LHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFEL 318
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 319 AGRPMKVGHV 328
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T ++ L D F+ +GQV +A II D RS+G+G++T ++ EEA A+ ++ L
Sbjct: 38 LSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITALDGKDL 97
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 98 DGRNIRVN 105
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMLEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
+E L D F+++G ++ D +S+G+G+++ E+AQKA+ +MN ++ + I+
Sbjct: 204 EEKLRDVFNKYGNAMSIRVMTD-DSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIY 262
Query: 67 V 67
V
Sbjct: 263 V 263
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 83 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 140
Query: 64 VIFV 67
+FV
Sbjct: 141 KVFV 144
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN
Sbjct: 179 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 226
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|115473215|ref|NP_001060206.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|113611742|dbj|BAF22120.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|222637411|gb|EEE67543.1| hypothetical protein OsJ_25023 [Oryza sativa Japonica Group]
Length = 238
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T L D FS +G V +A II+D +SKGYG++T ++ EEA A+ M+ L
Sbjct: 38 LSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTAMDGKDL 97
Query: 61 DVRVIFV 67
R++ V
Sbjct: 98 QGRIVRV 104
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D +N SKG+G++ TEE A++A+ MN MLL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCD--ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T ++ + G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L F +FGQV ++ D G +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 207 LNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|5803137|ref|NP_006734.1| putative RNA-binding protein 3 [Homo sapiens]
gi|383872909|ref|NP_001244635.1| RNA binding motif (RNP1, RRM) protein 3 [Macaca mulatta]
gi|332860686|ref|XP_521047.2| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan
troglodytes]
gi|332860688|ref|XP_003317502.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan
troglodytes]
gi|397471359|ref|XP_003807263.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan
paniscus]
gi|397471361|ref|XP_003807264.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan
paniscus]
gi|402910082|ref|XP_003917720.1| PREDICTED: putative RNA-binding protein 3 [Papio anubis]
gi|426395802|ref|XP_004064149.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Gorilla
gorilla gorilla]
gi|426395804|ref|XP_004064150.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Gorilla
gorilla gorilla]
gi|1710620|sp|P98179.1|RBM3_HUMAN RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3; AltName: Full=RNPL
gi|881954|gb|AAB17212.1| RNPL [Homo sapiens]
gi|13905080|gb|AAH06825.1| RNA binding motif (RNP1, RRM) protein 3 [Homo sapiens]
gi|119571152|gb|EAW50767.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|119571153|gb|EAW50768.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|380815298|gb|AFE79523.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815300|gb|AFE79524.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815302|gb|AFE79525.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420491|gb|AFH33459.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420493|gb|AFH33460.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948600|gb|AFI37905.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948602|gb|AFI37906.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|410228038|gb|JAA11238.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ ++A+KAL M+ L R I
Sbjct: 193 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMDGEWLGSRAIRC 252
Query: 68 DYV 70
++
Sbjct: 253 NWA 255
>gi|380696527|ref|ZP_09861386.1| RNA-binding protein rbpA [Bacteroides faecis MAJ27]
Length = 100
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L + F++FG+V+ A +I D RS+G+ ++ + + E QKA+ ++N +
Sbjct: 8 LSYGTNDADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMANDAEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVISVSVARP 79
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G ++ D +S+G+G+++ E+AQKA+ +MN ++ ++++V
Sbjct: 205 EKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
>gi|326931688|ref|XP_003211958.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like
[Meleagris gallopavo]
Length = 571
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 306 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 365
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 366 AGRPMKVGHV 375
>gi|167752759|ref|ZP_02424886.1| hypothetical protein ALIPUT_01020 [Alistipes putredinis DSM
17216]
gi|167659828|gb|EDS03958.1| hypothetical protein ALIPUT_01020 [Alistipes putredinis DSM
17216]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F T E L F ++G+V+ A II D RS+G+G++ E A+ A+ +N L
Sbjct: 8 LNFRTRGESLQTLFGEYGEVSSANIITDRETGRSRGFGFVEMPDESAARNAINALNGFEL 67
Query: 61 DVRVIFVDYVRP 72
D R I V+ RP
Sbjct: 68 DERAINVNEARP 79
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 25 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 82
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++MD G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS++G ++ D +S+G+G+++ E+AQ+A+ +MN ++ ++I+V
Sbjct: 207 LKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYV 263
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RS+G+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 309 ERLWKEFSPFGTITSAKVMMEEG--RSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 366
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 8 EMLADAFSQF-GQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
E L + F Q+ G+ ++MD G +SKG+G+++ E+AQKA+ +MN L+ R I+
Sbjct: 205 ERLREYFEQYVGKTLSVKVMMDEG-GKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIY 263
Query: 67 V 67
V
Sbjct: 264 V 264
>gi|402697293|gb|AFQ90834.1| polyA-binding protein cytoplasmic 1, partial [Oscaecilia
ochrocephala]
Length = 177
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 6 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVXFETQEAAERAIEKMNGMLLNDR 63
Query: 64 VIFV 67
+FV
Sbjct: 64 KVFV 67
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQKA+ MN L+ + I+V
Sbjct: 102 ERLKEVFGKYGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDXMNGKELNGKXIYV 160
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML DAF + G V A ++ D RS+GYG++ ST+EE +A+ +N +
Sbjct: 348 LSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEI 407
Query: 61 DVRVIFVDYVRPNRH 75
+ R I V+ R+
Sbjct: 408 EGREIRVNLALGKRY 422
>gi|218189840|gb|EEC72267.1| hypothetical protein OsI_05421 [Oryza sativa Indica Group]
Length = 116
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAFSQ G + + +I +SKGYG++ ++E+EA AL M ++
Sbjct: 44 LSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHKMGGEVI 103
Query: 61 DVRVIFVDY 69
D R I V Y
Sbjct: 104 DGRNIRVHY 112
>gi|432858814|ref|XP_004068952.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Oryzias latipes]
Length = 502
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 232 LHFNITEDMLRGIFEPFGRIENIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFEL 291
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 292 AGRPMKVGHV 301
>gi|410255528|gb|JAA15731.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|403281374|ref|XP_003932163.1| PREDICTED: RNA-binding protein 39 [Saimiri boliviensis boliviensis]
Length = 502
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|297741463|emb|CBI32594.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T + L AFSQFG++ ++ II D RS+G+G++T S+E+ + A+ MN L
Sbjct: 15 LAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQNL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 341 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 400
Query: 61 DVRVIFVDYVRPNRHYNT 78
R++ V V NT
Sbjct: 401 AGRLMKVGNVTERLDMNT 418
>gi|91202563|emb|CAJ72202.1| rna binding protein [Candidatus Kuenenia stuttgartiensis]
Length = 126
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT+E L F +FGQVT TII D S+G+G++ + EAQ AL +N L+ RV
Sbjct: 12 TTEEELKQVFEEFGQVTSVTIIKDKFSGESRGFGFVEMPSRAEAQAALDSLNGKDLNGRV 71
Query: 65 IFVDYVRP 72
+ V+ P
Sbjct: 72 LNVNEALP 79
>gi|19920866|ref|NP_609095.1| CG11266, isoform B [Drosophila melanogaster]
gi|24582412|ref|NP_723243.1| CG11266, isoform A [Drosophila melanogaster]
gi|7297213|gb|AAF52478.1| CG11266, isoform A [Drosophila melanogaster]
gi|15292031|gb|AAK93284.1| LD35730p [Drosophila melanogaster]
gi|22945834|gb|AAN10614.1| CG11266, isoform B [Drosophila melanogaster]
gi|220946034|gb|ACL85560.1| CG11266-PA [synthetic construct]
gi|220955788|gb|ACL90437.1| CG11266-PA [synthetic construct]
Length = 594
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 342 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 401
Query: 61 DVRVIFVDYVRPNRHYNT 78
R++ V V NT
Sbjct: 402 AGRLMKVGNVTERLDMNT 419
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G ++ D +S+G+G+++ E+AQKA+ +MN ++ ++++V
Sbjct: 205 EKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYV 263
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 37 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 94
>gi|359475330|ref|XP_003631658.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Vitis
vinifera]
Length = 162
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T + L AFSQFG++ ++ II D RS+G+G++T S+E+ + A+ MN L
Sbjct: 15 LAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMNGQNL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|147903467|ref|NP_001090410.1| U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Xenopus
laevis]
gi|123905237|sp|Q05AT9.1|U1SBP_XENLA RecName: Full=U11/U12 small nuclear ribonucleoprotein 35 kDa
protein; Short=U11/U12 snRNP 35 kDa protein; AltName:
Full=U1 snRNP-binding protein homolog
gi|116063426|gb|AAI23362.1| MGC154877 protein [Xenopus laevis]
Length = 272
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+E L + FS++G + + ++ D SKGY ++ E KA D NK+++
Sbjct: 58 LSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVI 117
Query: 61 DVRVIFVDY 69
D R +FVD+
Sbjct: 118 DQREVFVDF 126
>gi|15822705|gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
Length = 339
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L + FSQ+G+V +A +I+D RS+G+G+++ + EEA A+ M+ L
Sbjct: 47 LSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQAMDGQDL 106
Query: 61 DVRVIFVDYVRPNR 74
R I V+Y R
Sbjct: 107 HGRRIKVNYATEKR 120
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E+L AF ++G V A ++ D RS+GYG++ ST+EE + AL +N + L
Sbjct: 211 LSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVEL 270
Query: 61 DVRVIFVDYVRPNR 74
+ R + V R
Sbjct: 271 EGRAMRVSLAEGKR 284
>gi|544423|sp|Q99070.1|GRP2_SORBI RecName: Full=Glycine-rich RNA-binding protein 2
gi|21625|emb|CAA40862.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 168
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T E L AF+ FGQV + +I D RS+G+G++T S+E+ A+ +MN L
Sbjct: 15 LAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|361127946|gb|EHK99901.1| putative Nucleolysin TIA-1 [Glarea lozoyensis 74030]
Length = 505
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ ++A+KAL M+ L R I
Sbjct: 197 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERQDAEKALSSMDGEWLGSRAIRC 256
Query: 68 DYV 70
++
Sbjct: 257 NWA 259
>gi|426241404|ref|XP_004014581.1| PREDICTED: RNA-binding protein 39 isoform 2 [Ovis aries]
Length = 524
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 TGRPMKVGHV 326
>gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding protein-like [Solanum
tuberosum]
Length = 178
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT L++AFSQ+G+V ++ II D RS+G+G++T E+ + A+ MN L
Sbjct: 13 LAWATTDNTLSEAFSQYGEVVESKIINDRETGRSRGFGFVTFKDEQAMRDAIEGMNGQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|342889186|gb|EGU88353.1| hypothetical protein FOXB_01152 [Fusarium oxysporum Fo5176]
Length = 170
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L F +FG V +A ++ D RS+G+G++ + E +AQKA+ MN +
Sbjct: 9 LAWHTEEATLRQKFEEFGPVEEAVVVKDRDTGRSRGFGFVRYTQEGDAQKAIATMNNVEF 68
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 69 DGRTIRVD 76
>gi|332249061|ref|XP_003273679.1| PREDICTED: RNA-binding protein 39 [Nomascus leucogenys]
Length = 432
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 165 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 224
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 225 AGRPMKVGHV 234
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T+EML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 264 FNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFRNADDAKKALEQLNGFELAG 323
Query: 63 RVIFVDYV 70
R + V V
Sbjct: 324 RPMKVGNV 331
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 338 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 397
Query: 61 DVRVIFVDYVRPNRHYNT 78
R++ V V NT
Sbjct: 398 AGRLMKVGNVTERLDMNT 415
>gi|148674239|gb|EDL06186.1| RNA binding motif protein 39, isoform CRA_d [Mus musculus]
Length = 507
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 240 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 299
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 300 AGRPMKVGHV 309
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML + F + G V A ++ D RS+GYG++ ST+EE +AL +N L
Sbjct: 245 LSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTEL 304
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 305 EGREIRVN 312
>gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 170
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T E L AF+ FGQV + +I D RS+G+G++T S+E+ A+ +MN L
Sbjct: 15 LAWATNNETLEHAFANFGQVLDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + + +D G +SKGYG++ TEE AQKA+ +N MLL+ + ++V
Sbjct: 138 LHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ + T L D F+Q GQV + D+ RS GYGY+ S ++A +AL +N L
Sbjct: 41 LDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPL 100
Query: 61 DVRVIFVDY 69
+ R I + Y
Sbjct: 101 NNRPIRIMY 109
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L + FS +G +T ++ D S+G G++ ST EEA +AL++MN ++ +
Sbjct: 326 SIADEKLKELFSSYGTITSCKVMRDP-NGVSRGSGFVAFSTPEEASRALLEMNGKMVASK 384
Query: 64 VIFV 67
++V
Sbjct: 385 PLYV 388
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S STT + L F +FG +T A ++ D G +SK +G++ + ++A +A+ +N +
Sbjct: 220 LSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAARAVEALNGKKI 278
Query: 61 DVRVIFV 67
D + +V
Sbjct: 279 DDKEWYV 285
>gi|356517068|ref|XP_003527212.1| PREDICTED: uncharacterized protein LOC100777821 [Glycine max]
Length = 182
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T + L AFSQFG++ ++ +I D RS+G+G++T +TE+ + A+ MN L
Sbjct: 15 LAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|59858555|ref|NP_001012304.1| RNA-binding protein 39 [Danio rerio]
gi|27882534|gb|AAH44487.1| RNA binding motif protein 39a [Danio rerio]
gi|182892014|gb|AAI65689.1| Rbm39a protein [Danio rerio]
Length = 523
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 253 LHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFEL 312
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 313 AGRPMKVGHV 322
>gi|426241410|ref|XP_004014584.1| PREDICTED: RNA-binding protein 39 isoform 5 [Ovis aries]
Length = 530
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 263 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 322
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 323 TGRPMKVGHV 332
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQKA+ DMN ++ + I+V
Sbjct: 205 ERLKEMFGKYGPALSVKVMTD-DSGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
>gi|297812083|ref|XP_002873925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319762|gb|EFH50184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 167
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S ++ L FS+FGQVT II++ +S GYGY+ + +E+AQ A+ MN D R
Sbjct: 85 SVSEGRLKKVFSEFGQVTNVKIIINERTRQSLGYGYVWFNRKEDAQLAVEAMNGKFFDGR 144
Query: 64 VIFVDYVRPN 73
I V + +P
Sbjct: 145 FILVKFGQPG 154
>gi|21553972|gb|AAM63053.1| glycine-rich RNA binding protein, putative [Arabidopsis thaliana]
Length = 136
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L AF+ FG+VT+AT+I D RS+G+G+++ S E+ A A+ +M+ L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 102 NGRQIRVN 109
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQKA+ DMN ++ + I+V
Sbjct: 205 ERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYV 263
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F+ FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F Q+G ++ D +S+G+G+++ E+AQKA+ DMN L+ + IFV
Sbjct: 205 ERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ +E L F +FG++ II D RSKG+GY+ S + A+KAL N L
Sbjct: 249 ISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAKNGAEL 308
Query: 61 DVRVIFVDYVRP 72
D R + +D+ P
Sbjct: 309 DGRELRLDFSTP 320
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF + + + F + G + + D KG+GY+ S+ EEAQ A + +
Sbjct: 355 ISFDADENAITEYFQEHGTIKAVRLPTDRETGAPKGFGYVEMSSIEEAQAAFTALQGADI 414
Query: 61 DVRVIFVDYV 70
R I +DY
Sbjct: 415 AGRPIRLDYA 424
>gi|226469234|emb|CAX70096.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 327
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T+EML F FG++ +I D NRS+GYG++T ++A+KAL +N L
Sbjct: 74 LHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFEL 133
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V++V Y ++L
Sbjct: 134 AGRPMKVNHVTERSEYACLSAL 155
>gi|194758325|ref|XP_001961412.1| GF14957 [Drosophila ananassae]
gi|190615109|gb|EDV30633.1| GF14957 [Drosophila ananassae]
Length = 594
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 342 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 401
Query: 61 DVRVIFVDYV 70
R++ V V
Sbjct: 402 AGRLMKVGNV 411
>gi|117619969|ref|YP_856326.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561376|gb|ABK38324.1| RNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 95
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L FSQFGQV K II+D +SKG+G++ EA+KA+ ++ +
Sbjct: 11 LSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEI 70
Query: 61 DVRVIFVDYVRPNRHYNTDASLVR 84
R I V+ +P TDA R
Sbjct: 71 GGRTITVNQAKP----KTDAPRGR 90
>gi|74179655|dbj|BAE22477.1| unnamed protein product [Mus musculus]
Length = 521
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 254 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 313
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 314 AGRPMKVGHV 323
>gi|393217699|gb|EJD03188.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 142
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFS +GQV + ++ D RS+G+G++T S+E EA A+ +N+
Sbjct: 10 LSWNTTDDTLRKAFSDYGQVVDSIVMRDRDTGRSRGFGFVTFSSETEATGAISALNEQEF 69
Query: 61 DVRVIFVDY--VRP 72
+ R I V++ RP
Sbjct: 70 EGRRIKVNFANARP 83
>gi|226469236|emb|CAX70097.1| RNA-binding protein 39 [Schistosoma japonicum]
Length = 463
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T+EML F FG++ +I D NRS+GYG++T ++A+KAL +N L
Sbjct: 210 LHYNITEEMLKGIFEPFGKIEDIKLIKDPATNRSQGYGFVTYVNSDDAKKALDQLNGFEL 269
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V++V Y ++L
Sbjct: 270 AGRPMKVNHVTERSEYACLSAL 291
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 344 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 403
Query: 61 DVRVIFVDYVRPNRHYNT 78
R++ V V NT
Sbjct: 404 AGRLMKVGNVTERLDMNT 421
>gi|21672973|ref|NP_661038.1| RNA-binding protein [Chlorobium tepidum TLS]
gi|21646033|gb|AAM71380.1| RNA-binding protein [Chlorobium tepidum TLS]
Length = 90
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 39/68 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S T E L D FS+FGQV A II D RSKG+G++ E EA++A+ MN
Sbjct: 8 LPYSVTDEDLRDKFSEFGQVHSANIITDKFSGRSKGFGFVDMPNESEAREAIDAMNDKDF 67
Query: 61 DVRVIFVD 68
R I V+
Sbjct: 68 KGRTIKVN 75
>gi|221066816|ref|ZP_03542921.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220711839|gb|EED67207.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 83
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S E L FS G+V A +I D RS+G+G++ ST E+AQKA+ +N L
Sbjct: 10 LGYSIDGEALRAHFSGCGEVISADVISDRETGRSRGFGFVEMSTPEQAQKAIQTLNDQPL 69
Query: 61 DVRVIFVDYVRPNR 74
R + V RP +
Sbjct: 70 GGRAVGVALARPRK 83
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQKA+ +MN ++ + +FV
Sbjct: 205 ERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
>gi|242084350|ref|XP_002442600.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
gi|241943293|gb|EES16438.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
Length = 165
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L AFS +G+V ++ II+D RS+G+G++T STEE + A+ MN L
Sbjct: 15 LAWATDDNSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|61557287|ref|NP_001013225.1| RNA-binding protein 39 [Rattus norvegicus]
gi|392346874|ref|XP_003749654.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Rattus
norvegicus]
gi|60552170|gb|AAH91394.1| RNA binding motif protein 39 [Rattus norvegicus]
gi|74196119|dbj|BAE32977.1| unnamed protein product [Mus musculus]
gi|149030834|gb|EDL85861.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Rattus
norvegicus]
Length = 524
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|15229525|ref|NP_189025.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|30687226|ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|9294652|dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana]
gi|17979516|gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|20453303|gb|AAM19890.1| AT3g23830/F14O13_2 [Arabidopsis thaliana]
gi|332643298|gb|AEE76819.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
gi|332643299|gb|AEE76820.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana]
Length = 136
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L AF+ FG+VT+AT+I D RS+G+G+++ S E+ A A+ +M+ L
Sbjct: 42 LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 102 NGRQIRVN 109
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 44/74 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML +AF + G V A ++ D RS+GYG++ ST+EE +A+ +N L
Sbjct: 222 LSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISSLNGTEL 281
Query: 61 DVRVIFVDYVRPNR 74
+ R I V+ N+
Sbjct: 282 EGREIRVNLALGNK 295
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D F+QFG +T A + MD G+ SKGYG++ T+E AQ A+ ++N M L+ + ++V
Sbjct: 141 LLDTFAQFGTITSAKVAMD-GQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYV 197
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
T E L + F +FG +T ++ D S+G ++ S+ +EA +A+ +MN ++ +
Sbjct: 328 GTDDEKLRELFKEFGTITSCRVMRD-ASGVSRGSAFVAFSSPDEATRAVTEMNGKMVGAK 386
Query: 64 VIFV 67
++V
Sbjct: 387 PLYV 390
>gi|423196273|ref|ZP_17182856.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
gi|404632497|gb|EKB29102.1| hypothetical protein HMPREF1171_00888 [Aeromonas hydrophila SSU]
Length = 92
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L FSQFGQV K II+D +SKG+G++ EA+KA+ ++ +
Sbjct: 8 LSYRMTADELKTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAGLHGTEI 67
Query: 61 DVRVIFVDYVRPNRHYNTDASLVR 84
R I V+ +P TDA R
Sbjct: 68 GGRTITVNQAKP----KTDAPRGR 87
>gi|88682991|gb|AAI05542.1| RBM39 protein [Bos taurus]
Length = 528
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 261 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 320
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 321 AGRPMKVGHV 330
>gi|417411216|gb|JAA52053.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 499
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 226 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 285
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 286 AGRPMKVGHV 295
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 356 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 415
Query: 61 DVRVIFVDYVRPNRHYNT 78
R++ V V NT
Sbjct: 416 AGRLMKVGNVTERLDMNT 433
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T ++ L D F+ +GQV +A II D RS+G+G++T ++ EEA A+ ++ L
Sbjct: 38 LSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITALDGKDL 97
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 98 DGRNIRVN 105
>gi|157121123|ref|XP_001659836.1| RNA and export factor binding protein 2-I, putative [Aedes aegypti]
gi|108874700|gb|EAT38925.1| AAEL009222-PB [Aedes aegypti]
Length = 272
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT+ L D F++FG + KATI++D RS+G+G++ + E+A+ A N + + R
Sbjct: 102 TTESELYDVFTKFGPLKKATIVLDAKTGRSRGFGFVYFESTEDARVAHTQANGIEIGDRP 161
Query: 65 IFVDY 69
I VDY
Sbjct: 162 IRVDY 166
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQKA+ +MN ++ + +FV
Sbjct: 205 ERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263
>gi|4757926|ref|NP_004893.1| RNA-binding protein 39 isoform b [Homo sapiens]
gi|197097940|ref|NP_001125339.1| RNA-binding protein 39 [Pongo abelii]
gi|149733223|ref|XP_001501876.1| PREDICTED: RNA-binding protein 39 isoform 2 [Equus caballus]
gi|194044529|ref|XP_001925282.1| PREDICTED: RNA-binding protein 39 isoform 2 [Sus scrofa]
gi|296199701|ref|XP_002747278.1| PREDICTED: RNA-binding protein 39 isoform 1 [Callithrix jacchus]
gi|301762104|ref|XP_002916459.1| PREDICTED: RNA-binding protein 39-like [Ailuropoda melanoleuca]
gi|332858226|ref|XP_514808.3| PREDICTED: uncharacterized protein LOC458443 isoform 5 [Pan
troglodytes]
gi|344279921|ref|XP_003411734.1| PREDICTED: RNA-binding protein 39 isoform 2 [Loxodonta africana]
gi|345789988|ref|XP_865124.2| PREDICTED: RNA-binding protein 39 isoform 12 [Canis lupus
familiaris]
gi|354477984|ref|XP_003501197.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Cricetulus
griseus]
gi|426391509|ref|XP_004062115.1| PREDICTED: RNA-binding protein 39 isoform 2 [Gorilla gorilla
gorilla]
gi|75070825|sp|Q5RC80.1|RBM39_PONAB RecName: Full=RNA-binding protein 39; AltName: Full=RNA-binding
motif protein 39
gi|405192|gb|AAA16346.1| splicing factor [Homo sapiens]
gi|55727753|emb|CAH90627.1| hypothetical protein [Pongo abelii]
gi|119596568|gb|EAW76162.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|119596569|gb|EAW76163.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_c [Homo
sapiens]
gi|296480931|tpg|DAA23046.1| TPA: RNA binding motif protein 39 [Bos taurus]
gi|307686241|dbj|BAJ21051.1| RNA binding motif protein 39 [synthetic construct]
gi|344246681|gb|EGW02785.1| RNA-binding protein 39 [Cricetulus griseus]
gi|380783275|gb|AFE63513.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|383408127|gb|AFH27277.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|384939256|gb|AFI33233.1| RNA-binding protein 39 isoform b [Macaca mulatta]
gi|410218748|gb|JAA06593.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255438|gb|JAA15686.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292902|gb|JAA25051.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350855|gb|JAA42031.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350863|gb|JAA42035.1| RNA binding motif protein 39 [Pan troglodytes]
Length = 524
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|194332974|ref|YP_002014834.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
gi|194310792|gb|ACF45187.1| RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM
271]
Length = 90
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T++ L +AF++FGQV A II+D RSKG+G++ +E+A+KA+ +N
Sbjct: 8 LPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAIDSLNDTDF 67
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 68 NGRTIKVN 75
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|115481496|ref|NP_001064341.1| Os10g0321700 [Oryza sativa Japonica Group]
gi|110288867|gb|ABG66004.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638950|dbj|BAF26255.1| Os10g0321700 [Oryza sativa Japonica Group]
Length = 317
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L +AF+ +G+V +A +I+D RS+G+G++T ++ +EA A+ M+ L
Sbjct: 38 ISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDGKDL 97
Query: 61 DVRVIFVDYV 70
R++ V Y
Sbjct: 98 QGRIVRVSYA 107
>gi|157121121|ref|XP_001659835.1| RNA and export factor binding protein 2-I, putative [Aedes aegypti]
gi|108874699|gb|EAT38924.1| AAEL009222-PA [Aedes aegypti]
Length = 273
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT+ L D F++FG + KATI++D RS+G+G++ + E+A+ A N + + R
Sbjct: 102 TTESELYDVFTKFGPLKKATIVLDAKTGRSRGFGFVYFESTEDARVAHTQANGIEIGDRP 161
Query: 65 IFVDY 69
I VDY
Sbjct: 162 IRVDY 166
>gi|426241402|ref|XP_004014580.1| PREDICTED: RNA-binding protein 39 isoform 1 [Ovis aries]
Length = 530
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 TGRPMKVGHV 326
>gi|469070|dbj|BAA03741.1| RNA-binding glycine-rich protein-1a [Nicotiana sylvestris]
gi|295393563|gb|ADG03637.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 156
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L +AFSQFG++ + II D RS+G+G++T E+ + A+ MN L
Sbjct: 13 LAWATTDQTLGEAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMRDAIEGMNGQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|417411155|gb|JAA52027.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Desmodus rotundus]
Length = 491
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 224 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 283
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 284 AGRPMKVGHV 293
>gi|353241965|emb|CCA73743.1| probable heterogeneous nuclear ribonucleoprotein HRP1
[Piriformospora indica DSM 11827]
Length = 343
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T E L + F QFG+V AT+++D +RSKG+G++T + A++ L M + +D +
Sbjct: 92 SVTNEGLKEYFGQFGKVIDATVMVDRDSSRSKGFGFVTFDDQSGAER-LFGMPGLAIDGK 150
Query: 64 VIFVDYVRPNRHYNTDASLVR 84
I V +P N+D S R
Sbjct: 151 TIEVKMAQPRAGLNSDRSQNR 171
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT + L + FSQFG+V TI+ D RS+G+ ++T K +V + L
Sbjct: 6 LNWDTTDDGLRNYFSQFGRVEACTIMRDP-AGRSRGFAFLTFEDPAAVNKVMV--QEHYL 62
Query: 61 DVRVI 65
D ++I
Sbjct: 63 DGKII 67
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L +AF FG+V++A II D N++KGYG+++ E+A++A+ MN L R I ++
Sbjct: 148 LREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNW 207
Query: 70 V 70
Sbjct: 208 A 208
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ T E LA F+Q G VTKA II D + + + ++ S +A +AL MN L R
Sbjct: 48 AITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQSMNGRQLLER 107
Query: 64 VIFVDY-VRPNR 74
+ V++ V PN+
Sbjct: 108 EMRVNWAVEPNQ 119
>gi|52545994|emb|CAH18281.2| hypothetical protein [Homo sapiens]
Length = 513
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 240 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 299
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 300 AGRPMKVGHV 309
>gi|67517823|ref|XP_658695.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
gi|40747053|gb|EAA66209.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
Length = 892
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 197 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRC 256
Query: 68 DYV 70
++
Sbjct: 257 NWA 259
>gi|298528813|ref|ZP_07016217.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512465|gb|EFI36367.1| RNP-1 like RNA-binding protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 84
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT+ L D+F++FG+V+ A II D RS+G+G++ E A +A+ +N
Sbjct: 9 LSWNTTETQLRDSFAEFGEVSSAKIIEDRETGRSRGFGFV--EMENGADEAVEKLNGKDF 66
Query: 61 DVRVIFVDYVRPNRH 75
D R I V+ +P R
Sbjct: 67 DGRTIKVNVAKPKRE 81
>gi|148927167|ref|ZP_01810792.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
gi|147887382|gb|EDK72831.1| RNP-1 like RNA-binding protein [candidate division TM7 genomosp.
GTL1]
Length = 108
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L F++ G+V +A ++ D RSKG+G++T +E+A A+ +++ L
Sbjct: 10 LAYATTDDSLRAHFAEKGEVEEAKVVTDRDSGRSKGFGFVTYVNDEDADTAIKELDNSEL 69
Query: 61 DVRVIFVDYVRP 72
D R I V+ RP
Sbjct: 70 DGRNIHVNEARP 81
>gi|431894348|gb|ELK04148.1| RNA-binding protein 39 [Pteropus alecto]
Length = 601
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 334 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 393
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 394 AGRPMKVGHV 403
>gi|429863469|gb|ELA37920.1| nuclear and cytoplasmic polyadenylated rna-binding protein pub1
[Colletotrichum gloeosporioides Nara gc5]
Length = 479
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 190 EVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRC 249
Query: 68 DYV 70
++
Sbjct: 250 NWA 252
>gi|349604477|gb|AEQ00017.1| RNA-binding protein 39-like protein, partial [Equus caballus]
Length = 374
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 240 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 299
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 300 AGRPMKVGHV----TERTDAS 316
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML + F + G V A ++ D RS+GYG++ ST+EE +AL +N L
Sbjct: 243 LSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTEL 302
Query: 61 DVRVIFVD 68
+ R I V+
Sbjct: 303 EGREIRVN 310
>gi|410953912|ref|XP_003983612.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39 [Felis
catus]
Length = 523
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 256 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 315
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 316 AGRPMKVGHV 325
>gi|330688445|ref|NP_001193433.1| RNA-binding protein 39 [Bos taurus]
Length = 530
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 263 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 322
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 323 AGRPMKVGHV 332
>gi|255726450|ref|XP_002548151.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134075|gb|EER33630.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 472
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L +AFS+FG + +A ++ D+ +RS+GYG++T S + +A+ AL MN L R I
Sbjct: 189 EGLRNAFSKFGSLKQAHVMWDMQTSRSRGYGFVTFSEQADAELALQTMNGEWLGGRAIRC 248
Query: 68 DYV 70
++
Sbjct: 249 NWA 251
>gi|194384132|dbj|BAG64839.1| unnamed protein product [Homo sapiens]
Length = 521
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 248 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 307
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 308 AGRPMKVGHV 317
>gi|157113379|ref|XP_001657804.1| glycine rich RNA binding protein, putative [Aedes aegypti]
gi|108877794|gb|EAT42019.1| AAEL006416-PA [Aedes aegypti]
Length = 261
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT+ L D F++FG + KATI++D RS+G+G++ + E+A+ A N + + R
Sbjct: 91 TTESELYDVFTKFGPLKKATIVLDAKTGRSRGFGFVYFESTEDARVAHTQANGIEIGDRP 150
Query: 65 IFVDY 69
I VDY
Sbjct: 151 IRVDY 155
>gi|62857615|ref|NP_001016788.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|62201342|gb|AAH93451.1| RNA binding motif protein 39 [Xenopus (Silurana) tropicalis]
gi|89273890|emb|CAJ83908.1| RNA-binding region (RNP1, RRM) containing 2 [Xenopus (Silurana)
tropicalis]
Length = 542
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 258 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 317
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 318 AGRPMKVGHV 327
>gi|340546031|gb|AEK51814.1| cytoplasmic poly(A) binding protein 1 [Heteronotia binoei]
Length = 177
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 6 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 63
Query: 64 VIFV 67
+FV
Sbjct: 64 KVFV 67
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 102 ERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 160
>gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich protein-1c [Nicotiana sylvestris]
Length = 165
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT L +AFSQ+G+V ++ II D RS+G+G++T E+ + A+ MN L
Sbjct: 13 LAWATTDRTLGEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMRDAIEGMNGQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|153809381|ref|ZP_01962049.1| hypothetical protein BACCAC_03695 [Bacteroides caccae ATCC 43185]
gi|423221052|ref|ZP_17207546.1| hypothetical protein HMPREF1061_04319 [Bacteroides caccae
CL03T12C61]
gi|149127967|gb|EDM19189.1| hypothetical protein BACCAC_03695 [Bacteroides caccae ATCC 43185]
gi|392622291|gb|EIY16423.1| hypothetical protein HMPREF1061_04319 [Bacteroides caccae
CL03T12C61]
Length = 99
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L + F++FG+V+ A +I D RS+G+ ++ + E QKA+ ++N +
Sbjct: 8 LSYGTNDADLTNLFAEFGEVSSAKVIFDRESGRSRGFAFVEMPNDTEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVISVSVARP 79
>gi|119589928|gb|EAW69522.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
gi|119589930|gb|EAW69524.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
Length = 297
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L++AFSQ+G+V ++ II D RS+G+G++T E+ + A+ MN L
Sbjct: 15 LAWATTDQSLSEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMKDAIEGMNGQTL 74
Query: 61 DVRVIFVD 68
D R + V+
Sbjct: 75 DGRNVTVN 82
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 6 SIDNKALYDXFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 63
Query: 64 VIFV 67
+FV
Sbjct: 64 KVFV 67
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 102 ERLKELFGXFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYV 160
>gi|395505312|ref|XP_003756986.1| PREDICTED: RNA-binding protein 39 [Sarcophilus harrisii]
Length = 557
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 290 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 349
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 350 AGRPMKVGHV 359
>gi|384498363|gb|EIE88854.1| hypothetical protein RO3G_13565 [Rhizopus delemar RA 99-880]
Length = 255
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D F QFG + K TI+ D N+S+G+G++ + +A +A MN +
Sbjct: 138 LSLRTREGDLEDVFRQFGSIEKVTIVYDHRSNKSRGFGFVYFKDQTDATRARDAMNGTDI 197
Query: 61 DVRVIFVDY 69
D R I VDY
Sbjct: 198 DERKIRVDY 206
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L D FS FG + ++ D +N SKGYG++ T+EEA++A+ MN M L+ +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGR 172
Query: 70 VRPNR 74
+ R
Sbjct: 173 FKSRR 177
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A + M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 318 ERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 375
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+A+KA+ +MN L+ + I+V
Sbjct: 205 ERLQDLFGRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
>gi|221065733|ref|ZP_03541838.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|264678761|ref|YP_003278668.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
gi|220710756|gb|EED66124.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|262209274|gb|ACY33372.1| RNA-binding region RNP-1 [Comamonas testosteroni CNB-2]
Length = 113
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T L F++FG VT A ++MD RSKG+ ++ ++ +E Q A+ ++ M +D
Sbjct: 12 YSVTDSSLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISGLHGMSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ +P
Sbjct: 72 RSIVVNLAKP 81
>gi|402697295|gb|AFQ90835.1| polyA-binding protein cytoplasmic 1, partial [Sternotherus minor]
Length = 175
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 6 SJDNKALYDXFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 63
Query: 64 VIFV 67
+FV
Sbjct: 64 KVFV 67
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F FG ++ D +SKG+G+++ E+AQKA+ +MN + + I+V
Sbjct: 102 ERLKELFGXFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVXEMNGKEXNGKQIYV 160
>gi|407688765|ref|YP_006803938.1| hypothetical protein AMBAS45_14970 [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407292145|gb|AFT96457.1| hypothetical protein AMBAS45_14970 [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 117
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
TKE L D F +FG + ++MD SKG+G++ ST+EE KA+ +N ++D + I
Sbjct: 13 TKENLEDLFFEFGTIASCDLVMDEASGLSKGFGFVEMSTQEETDKAIEKLNAKVIDGKKI 72
Query: 66 FVDY 69
V +
Sbjct: 73 RVKW 76
>gi|281346065|gb|EFB21649.1| hypothetical protein PANDA_004543 [Ailuropoda melanoleuca]
Length = 497
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 224 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 283
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 284 AGRPMKVGHV 293
>gi|224077247|ref|XP_002192236.1| PREDICTED: RNA-binding protein 39 [Taeniopygia guttata]
Length = 522
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|148226721|ref|NP_001086950.1| RNA binding motif protein 39 [Xenopus laevis]
gi|50414893|gb|AAH77813.1| Rnpc2-prov protein [Xenopus laevis]
Length = 540
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 256 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 315
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 316 AGRPMKVGHV 325
>gi|24582417|ref|NP_723245.1| CG11266, isoform C [Drosophila melanogaster]
gi|24582419|ref|NP_723246.1| CG11266, isoform D [Drosophila melanogaster]
gi|24582421|ref|NP_723247.1| CG11266, isoform F [Drosophila melanogaster]
gi|24582423|ref|NP_723248.1| CG11266, isoform G [Drosophila melanogaster]
gi|45550943|ref|NP_723244.2| CG11266, isoform E [Drosophila melanogaster]
gi|22945836|gb|AAN10616.1| CG11266, isoform C [Drosophila melanogaster]
gi|22945837|gb|AAN10617.1| CG11266, isoform D [Drosophila melanogaster]
gi|22945838|gb|AAN10618.1| CG11266, isoform F [Drosophila melanogaster]
gi|22945839|gb|AAN10619.1| CG11266, isoform G [Drosophila melanogaster]
gi|45445036|gb|AAN10615.2| CG11266, isoform E [Drosophila melanogaster]
Length = 287
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 35 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 94
Query: 61 DVRVIFVDYVRPNRHYNT 78
R++ V V NT
Sbjct: 95 AGRLMKVGNVTERLDMNT 112
>gi|42522915|ref|NP_968295.1| RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|426403373|ref|YP_007022344.1| RNA-binding protein [Bdellovibrio bacteriovorus str. Tiberius]
gi|39574111|emb|CAE79288.1| putative RNA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|425860041|gb|AFY01077.1| putative RNA-binding protein [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 116
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S + LAD F++FG V A I++D RSKG+ ++ ST++EA A+ +N + L
Sbjct: 10 LSYSLDDQSLADTFAEFGNVESARIVIDRETGRSKGFAFVEMSTDDEAATAIAKLNGVEL 69
Query: 61 DVRVIFVDYVRP 72
R + V +P
Sbjct: 70 MGRAMNVSEAKP 81
>gi|355784531|gb|EHH65382.1| RNA-binding motif protein 39 [Macaca fascicularis]
Length = 530
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|156058654|ref|XP_001595250.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980]
gi|154701126|gb|EDO00865.1| hypothetical protein SS1G_03339 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG+ ++A+KAL M+ L R I
Sbjct: 193 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKALSSMDGEWLGSRAIRC 252
Query: 68 DYV 70
++
Sbjct: 253 NWA 255
>gi|118100450|ref|XP_425690.2| PREDICTED: RNA-binding protein 39 [Gallus gallus]
gi|363741409|ref|XP_003642487.1| PREDICTED: RNA-binding protein 39-like [Gallus gallus]
Length = 522
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys
terrapin]
Length = 175
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 6 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 63
Query: 64 VIFV 67
+FV
Sbjct: 64 KVFV 67
>gi|126291198|ref|XP_001371677.1| PREDICTED: RNA-binding protein 39 isoform 2 [Monodelphis domestica]
Length = 533
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L D FS FG + ++ D +N SKGYG++ T+EEA++A+ MN M L+ +FV
Sbjct: 115 LYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGR 172
Query: 70 VRPNR 74
+ R
Sbjct: 173 FKSRR 177
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A + M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 318 ERLRKEFSPFGTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 375
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+A+KA+ +MN L+ + I+V
Sbjct: 205 ERLQDLFGRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYV 263
>gi|296199709|ref|XP_002747282.1| PREDICTED: RNA-binding protein 39 isoform 5 [Callithrix jacchus]
Length = 504
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 231 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 290
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 291 AGRPMKVGHV 300
>gi|194386036|dbj|BAG59582.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 230 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 289
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 290 AGRPMKVGHV 299
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++ +++ L DAFS+FG+V A+II D RSKG+G++ + EA++A+ MN L
Sbjct: 8 LAYTVSEDDLRDAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIESMNGKDL 67
Query: 61 DVRVIFVD 68
+ R + V+
Sbjct: 68 NGRTVTVN 75
>gi|193785136|dbj|BAG54289.1| unnamed protein product [Homo sapiens]
Length = 506
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 233 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 292
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 293 AGRPMKVGHV 302
>gi|167761793|ref|ZP_02433920.1| hypothetical protein BACSTE_00134 [Bacteroides stercoris ATCC
43183]
gi|167700299|gb|EDS16878.1| hypothetical protein BACSTE_00134 [Bacteroides stercoris ATCC
43183]
Length = 99
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ L + F++FG+V+ A +I+D RS+G+ ++ + + E QKA+ ++N +
Sbjct: 8 LSYGINNADLTNLFAEFGEVSSAKVILDRETGRSRGFAFVEMNNDTEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DSKVISVSVARP 79
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQ+A+ +MN ++ + ++V
Sbjct: 205 EKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator
mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra
serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++A+ MN MLL+ R
Sbjct: 6 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 63
Query: 64 VIFV 67
+FV
Sbjct: 64 KVFV 67
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 102 ERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 160
>gi|190402270|gb|ACE77680.1| RNA binding motif protein 39 isoform a (predicted) [Sorex araneus]
Length = 435
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 317 AGRPMKVGHV----TERTDAS 333
>gi|157163899|ref|YP_001467322.1| HIT family protein [Campylobacter concisus 13826]
gi|416114611|ref|ZP_11593777.1| RNA-binding protein [Campylobacter concisus UNSWCD]
gi|384578134|gb|EIF07405.1| RNA-binding protein [Campylobacter concisus UNSWCD]
Length = 65
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
+ +AF+QFG+V +A I+ D +RSKG+G++ E QKA+ +N+ L R + V+
Sbjct: 1 MKEAFAQFGEVRRAKIVKDRETDRSKGFGFVEMDDANEGQKAIDALNEKELGGRTLRVNE 60
Query: 70 VRP 72
RP
Sbjct: 61 ARP 63
>gi|35493811|ref|NP_909122.1| RNA-binding protein 39 isoform a [Homo sapiens]
gi|281182530|ref|NP_001162566.1| RNA-binding protein 39 [Papio anubis]
gi|284004921|ref|NP_001164806.1| RNA-binding protein 39 [Oryctolagus cuniculus]
gi|149733225|ref|XP_001501869.1| PREDICTED: RNA-binding protein 39 isoform 1 [Equus caballus]
gi|296199703|ref|XP_002747279.1| PREDICTED: RNA-binding protein 39 isoform 2 [Callithrix jacchus]
gi|332858224|ref|XP_003316931.1| PREDICTED: uncharacterized protein LOC458443 isoform 1 [Pan
troglodytes]
gi|335304742|ref|XP_003360012.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|344279919|ref|XP_003411733.1| PREDICTED: RNA-binding protein 39 isoform 1 [Loxodonta africana]
gi|345789986|ref|XP_864959.2| PREDICTED: RNA-binding protein 39 isoform 3 [Canis lupus
familiaris]
gi|354477982|ref|XP_003501196.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Cricetulus
griseus]
gi|397523808|ref|XP_003831910.1| PREDICTED: RNA-binding protein 39 [Pan paniscus]
gi|426391507|ref|XP_004062114.1| PREDICTED: RNA-binding protein 39 isoform 1 [Gorilla gorilla
gorilla]
gi|28201880|sp|Q14498.2|RBM39_HUMAN RecName: Full=RNA-binding protein 39; AltName: Full=Hepatocellular
carcinoma protein 1; AltName: Full=RNA-binding motif
protein 39; AltName: Full=RNA-binding region-containing
protein 2; AltName: Full=Splicing factor HCC1
gi|405194|gb|AAA16347.1| splicing factor [Homo sapiens]
gi|119596565|gb|EAW76159.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|119596567|gb|EAW76161.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_a [Homo
sapiens]
gi|146327034|gb|AAI41836.1| RNA binding motif protein 39 [Homo sapiens]
gi|164623752|gb|ABY64678.1| RNA binding motif protein 39, isoform 1 (predicted) [Papio anubis]
gi|165971473|gb|AAI58173.1| RNA binding motif protein 39 [Homo sapiens]
gi|166831598|gb|ABY90123.1| RNA binding motif protein 39 isoform a (predicted) [Callithrix
jacchus]
gi|169731519|gb|ACA64891.1| RNA binding motif protein 39 isoform a (predicted) [Callicebus
moloch]
gi|197215647|gb|ACH53039.1| RNA binding motif protein 39 isoform a (predicted) [Otolemur
garnettii]
gi|217038339|gb|ACJ76632.1| RNA binding motif protein 39 isoform a (predicted) [Oryctolagus
cuniculus]
gi|229368730|gb|ACQ63013.1| RNA binding motif protein 39 isoform a (predicted) [Dasypus
novemcinctus]
gi|351702535|gb|EHB05454.1| RNA-binding protein 39 [Heterocephalus glaber]
gi|380783277|gb|AFE63514.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|383408125|gb|AFH27276.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|384939254|gb|AFI33232.1| RNA-binding protein 39 isoform a [Macaca mulatta]
gi|410218746|gb|JAA06592.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410255434|gb|JAA15684.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292900|gb|JAA25050.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410292904|gb|JAA25052.1| RNA binding motif protein 39 [Pan troglodytes]
gi|410350859|gb|JAA42033.1| RNA binding motif protein 39 [Pan troglodytes]
gi|440902514|gb|ELR53299.1| RNA-binding protein 39 [Bos grunniens mutus]
Length = 530
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F +G ++ D +SKG+G+++ E+AQKA+ DMN L+ R ++V
Sbjct: 205 EKLKELFGNYGPALSVRVMTD-DTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
>gi|259488599|tpe|CBF88164.1| TPA: nuclear and cytoplasmic polyadenylated RNA-binding protein
pub1 (AFU_orthologue; AFUA_1G12000) [Aspergillus
nidulans FGSC A4]
Length = 477
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 196 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRC 255
Query: 68 DYV 70
++
Sbjct: 256 NWA 258
>gi|126291195|ref|XP_001371651.1| PREDICTED: RNA-binding protein 39 isoform 1 [Monodelphis domestica]
Length = 524
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|118403314|ref|NP_573505.2| RNA-binding protein 39 [Mus musculus]
gi|392346872|ref|XP_003749653.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Rattus
norvegicus]
gi|341941811|sp|Q8VH51.2|RBM39_MOUSE RecName: Full=RNA-binding protein 39; AltName: Full=Coactivator of
activating protein 1 and estrogen receptors;
Short=Coactivator of AP-1 and ERs; AltName:
Full=RNA-binding motif protein 39; AltName:
Full=RNA-binding region-containing protein 2; AltName:
Full=Transcription coactivator CAPER
gi|55991480|gb|AAH86645.1| RNA binding motif protein 39 [Mus musculus]
gi|74151058|dbj|BAE27657.1| unnamed protein product [Mus musculus]
gi|148674237|gb|EDL06184.1| RNA binding motif protein 39, isoform CRA_b [Mus musculus]
Length = 530
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|432101442|gb|ELK29624.1| RNA-binding protein 39 [Myotis davidii]
Length = 491
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 235 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 294
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 295 AGRPMKVGHV 304
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ T L +AFSQ GQV + D+ RS GYGY+ +T ++A +AL ++N M L+ R
Sbjct: 49 TVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGR 108
Query: 64 VIFVDY 69
I V Y
Sbjct: 109 AIRVMY 114
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L + FS FG + + +D +SKGYG++ T+E AQ+A+ +N MLL+ +
Sbjct: 137 SIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDK 195
Query: 64 VIFV 67
++V
Sbjct: 196 QVYV 199
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T + L + F+ FG +T ++ D S+G G++ ST EEA +A+ +MN ++ +
Sbjct: 331 SVTDDKLREHFAPFGTITSCKVMRDP-TGVSRGSGFVAFSTPEEASRAITEMNGKMIVTK 389
Query: 64 VIFV 67
++V
Sbjct: 390 PLYV 393
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S S + E L F +FG VT + +IM G+ +SKG+G++ ++A +A+ +N
Sbjct: 225 LSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 283
Query: 61 DVRVIFV 67
D + FV
Sbjct: 284 DDKEWFV 290
>gi|426241406|ref|XP_004014582.1| PREDICTED: RNA-binding protein 39 isoform 3 [Ovis aries]
Length = 502
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 235 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 294
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 295 TGRPMKVGHV 304
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G ++ D +SKG+G+++ E+AQKA+ +MN L+ R ++V
Sbjct: 205 EKLKELFSKYGPALSIRVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYV 263
>gi|302762761|ref|XP_002964802.1| hypothetical protein SELMODRAFT_69504 [Selaginella
moellendorffii]
gi|300167035|gb|EFJ33640.1| hypothetical protein SELMODRAFT_69504 [Selaginella
moellendorffii]
Length = 94
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ L AF+ +G+VT+A +IMD RS+G+G++T + EA+ A+ M+ L
Sbjct: 2 LAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAVQGMDGHEL 61
Query: 61 DVRVIFVDYV--RPN 73
R I VDY RP+
Sbjct: 62 GGRSIRVDYASDRPS 76
>gi|299751777|ref|XP_001830476.2| glycine-rich RNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|298409530|gb|EAU91356.2| glycine-rich RNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 142
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT + L AFSQ+G V + ++ D RS+G+G++T S EEA A+ ++ L
Sbjct: 10 LSWNTTDDSLRQAFSQYGNVLDSIVMRDRDTGRSRGFGFVTYSATEEADAAIASLHDQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIKVN 77
>gi|119596572|gb|EAW76166.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_e [Homo
sapiens]
Length = 445
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 317 AGRPMKVGHV----TERTDAS 333
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 25 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 82
Query: 64 VIFV 67
+FV
Sbjct: 83 KVFV 86
>gi|367020484|ref|XP_003659527.1| hypothetical protein MYCTH_2296694 [Myceliophthora thermophila
ATCC 42464]
gi|347006794|gb|AEO54282.1| hypothetical protein MYCTH_2296694 [Myceliophthora thermophila
ATCC 42464]
Length = 153
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L F +FG+V +A ++ D RS+G+G++ E++AQKA+ MN +
Sbjct: 9 LAWHTEEATLRQKFEEFGEVEEAVVVKDRDTGRSRGFGFVRYINEDDAQKAITAMNNVEF 68
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 69 DGRQIRVD 76
>gi|17063213|gb|AAL32373.1| transcription coactivator CAPER [Mus musculus]
Length = 530
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|426241408|ref|XP_004014583.1| PREDICTED: RNA-binding protein 39 isoform 4 [Ovis aries]
Length = 508
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 235 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 294
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 295 TGRPMKVGHV 304
>gi|347839348|emb|CCD53920.1| similar to nuclear and cytoplasmic polyadenylated RNA-binding
protein pub1 [Botryotinia fuckeliana]
Length = 506
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG+ ++A+KAL M+ L R I
Sbjct: 198 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFRERQDAEKALSSMDGEWLGSRAIRC 257
Query: 68 DYV 70
++
Sbjct: 258 NWA 260
>gi|344250008|gb|EGW06112.1| Putative RNA-binding protein 3 [Cricetulus griseus]
Length = 169
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|223938363|ref|ZP_03630257.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
gi|223892932|gb|EEF59399.1| RNP-1 like RNA-binding protein [bacterium Ellin514]
Length = 127
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+ L D F+Q G VT +IMD R +G+G++T T+E AQ A+ +N
Sbjct: 10 LPFTATENELQDMFAQHGPVTSVDLIMDKFSGRPRGFGFVTMETQEGAQAAVQALNGTDF 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRPLTVNEARP 81
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 96 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 153
Query: 64 VIFV 67
+FV
Sbjct: 154 KVFV 157
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 295 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 352
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G ++ D +SKG+G+++ E+AQKA+ DMN L+ R ++V
Sbjct: 192 EKLKELFSKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 250
>gi|256839767|ref|ZP_05545276.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738697|gb|EEU52022.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 123
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L F+ +G++T A +IMD RS+G+G++ S +E A+KA+ ++N+
Sbjct: 8 LSYNISDADLRQLFADYGEITSAKVIMDRETGRSRGFGFVELSDDELAKKAIEELNQASY 67
Query: 61 DVRVIFVDYVRP 72
D +VI + RP
Sbjct: 68 DGKVINITEARP 79
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L F+QFG +T A ++ + G RSKG+G++ S+ EEA KA+V+MN+ +++ R ++V
Sbjct: 310 LRKEFAQFGTITSAKVMTENG--RSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYV 365
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG ++ I+ D ++ S+GYG++ T+E A+ A+ +N MLL+ +
Sbjct: 108 SIDNKALYDTFSAFGNISSCKIVCD--EHGSRGYGFVHFETDEAARIAIEKVNGMLLNGK 165
Query: 64 VIFV 67
+FV
Sbjct: 166 KVFV 169
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T++ML FS G V + D+ RS GY Y+ +A++AL MN ++ R I
Sbjct: 22 TEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDTMNFDIIKGRPI 81
Query: 66 FVDYVRPNRHYNTDASL 82
+ + Y D SL
Sbjct: 82 RITW------YQRDPSL 92
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
+S T E L + F +G++ A +++D +SK +G+++ E A+KA+ +N
Sbjct: 197 LSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALN 252
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G ++ D G +SKG+G+++ E+AQKA+ DMN L+ R ++V
Sbjct: 205 EKLKELFSKYGPALSIRVMTDDG-GKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYV 263
>gi|184185564|gb|ACC68962.1| RNA binding motif protein 39 isoform a (predicted) [Rhinolophus
ferrumequinum]
Length = 498
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 317 AGRPMKVGHV 326
>gi|158516903|gb|ABW70168.1| putative glycine-rich RNA-binding protein 2 [Bambusa oldhamii]
Length = 162
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAF+ FG+V +A +I D +S+G+G+++ S ++A+ A+ M+ L
Sbjct: 44 LSWGTDDQSLKDAFTSFGEVVEARVITDRDTGKSRGFGFVSFSNGDDAKNAMSSMDGQEL 103
Query: 61 DVRVIFVDYV--RP 72
+ R I V++ RP
Sbjct: 104 EGRNIHVNFANERP 117
>gi|116780918|gb|ABK21879.1| unknown [Picea sitchensis]
Length = 172
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L DAFS FG++ ++ II D RS+G+G++T S E+ + A+ MN +L
Sbjct: 16 LAWATDDRSLQDAFSPFGEILESKIISDRETGRSRGFGFVTFSDEQSMRDAIDAMNGKVL 75
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 76 DGRNITVN 83
>gi|13278367|gb|AAH04000.1| Rbm39 protein [Mus musculus]
Length = 429
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 156 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 215
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 216 AGRPMKVGHV 225
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L AFS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 30 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87
>gi|449265754|gb|EMC76900.1| RNA-binding protein 39, partial [Columba livia]
Length = 423
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 158 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 217
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 218 AGRPMKVGHV 227
>gi|162463657|ref|NP_001105707.1| glycine-rich protein1 [Zea mays]
gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays]
Length = 155
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STEE + + MN L
Sbjct: 15 LAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEERMRNRIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|544426|sp|Q03878.1|GRP1_DAUCA RecName: Full=Glycine-rich RNA-binding protein
gi|18347|emb|CAA41152.1| glycine-rich protein [Daucus carota]
gi|445138|prf||1908438A Gly-rich protein
Length = 157
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T E L AFSQFG +T + II D RS+G+G++T E+ + A+ MN L
Sbjct: 13 LAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQEL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L DAF+ FG+V+ A +I D +SKGYG+++ EEA++A+ MN L R I ++
Sbjct: 151 LKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 210
Query: 70 V 70
Sbjct: 211 A 211
>gi|226290334|gb|EEH45818.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Paracoccidioides brasiliensis Pb18]
Length = 508
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 202 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRC 261
Query: 68 DYV 70
++
Sbjct: 262 NWA 264
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L DAF+ FG+V+ A +I D +SKGYG+++ EEA++A+ MN L R I ++
Sbjct: 178 LKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 237
Query: 70 V 70
Sbjct: 238 A 238
>gi|402086968|gb|EJT81866.1| hypothetical protein GGTG_01840 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 192
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L F +FG V +A ++ D RS+G+G++ + E++AQ+A+ MN +
Sbjct: 9 LAWHTEEGTLRQKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYTNEDDAQRAISAMNNVEF 68
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 69 DGRTIRVD 76
>gi|291510230|gb|ADE10071.1| RRM [Tremella fuciformis]
Length = 326
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D F+++G+V K I+ D +RS+G+G++T T E+AQ + +N +LL
Sbjct: 126 LSVRTRERDLEDEFARYGEVEKVVIVYDQRTDRSRGFGFITMRTVEDAQLCVEKLNGLLL 185
Query: 61 DVRVIFVDYVRPNR 74
R + VD+ R
Sbjct: 186 HGRAVRVDFSATQR 199
>gi|295669832|ref|XP_002795464.1| TIA1 cytotoxic granule-associated RNA binding protein
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226285398|gb|EEH40964.1| TIA1 cytotoxic granule-associated RNA binding protein
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 501
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 172 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRC 231
Query: 68 DYV 70
++
Sbjct: 232 NWA 234
>gi|115491713|ref|XP_001210484.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
gi|114197344|gb|EAU39044.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
Length = 478
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 198 EILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERSDAEKALSSMDGEWLGSRAIRC 257
Query: 68 DYV 70
++
Sbjct: 258 NWA 260
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L DAF+ FG+V+ A +I D +SKGYG+++ EEA++A+ MN L R I ++
Sbjct: 178 LKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 237
Query: 70 V 70
Sbjct: 238 A 238
>gi|296235404|ref|XP_002762884.1| PREDICTED: putative RNA-binding protein 3 [Callithrix jacchus]
Length = 159
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|115520925|gb|ABJ08845.1| putative polyadenylate-binding protein 1 [Squalus acanthias]
Length = 212
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 41 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 98
Query: 64 VIFV 67
+FV
Sbjct: 99 KVFV 102
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F++FG ++ D RSKG+G+++ E+AQKA+ +MN ++ R ++V
Sbjct: 137 ERLKEIFNKFGAFLSVKVMTD-DSGRSKGFGFVSFEKHEDAQKAVDEMNGKEINGRQVYV 195
>gi|336176066|ref|NP_001229529.1| RNA-binding protein 39 isoform d [Homo sapiens]
gi|73991836|ref|XP_865202.1| PREDICTED: RNA-binding protein 39 isoform 16 [Canis lupus
familiaris]
gi|296199705|ref|XP_002747280.1| PREDICTED: RNA-binding protein 39 isoform 3 [Callithrix jacchus]
gi|332858230|ref|XP_003316933.1| PREDICTED: uncharacterized protein LOC458443 isoform 3 [Pan
troglodytes]
gi|335304749|ref|XP_003360015.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719245|ref|XP_003363967.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|426391513|ref|XP_004062117.1| PREDICTED: RNA-binding protein 39 isoform 4 [Gorilla gorilla
gorilla]
Length = 502
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 235 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 294
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 295 AGRPMKVGHV 304
>gi|47223170|emb|CAG11305.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +N L
Sbjct: 251 LHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFEL 310
Query: 61 DVRVIFVDYVRPNRHYNTDASLV 83
R + V +V +T +S++
Sbjct: 311 AGRPMKVGHVTERSDSSTASSIL 333
>gi|410899827|ref|XP_003963398.1| PREDICTED: RNA-binding protein 39-like [Takifugu rubripes]
Length = 500
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +N L
Sbjct: 236 LHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFEL 295
Query: 61 DVRVIFVDYVRPNRHYNTDASLV 83
R + V +V +T +S++
Sbjct: 296 AGRPMKVGHVTERSDSSTASSIL 318
>gi|194386804|dbj|BAG61212.1| unnamed protein product [Homo sapiens]
Length = 502
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 235 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 294
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 295 AGRPMKVGHV 304
>gi|418530958|ref|ZP_13096878.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
gi|371452037|gb|EHN65069.1| RNA recognition motif-containing protein [Comamonas testosteroni
ATCC 11996]
Length = 83
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L F G V A IIMD RS+G+G++ T+E+AQKA+ +N L
Sbjct: 10 LSYTVDSDALRAHFGSCGDVVAADIIMDRETGRSRGFGFVEMGTQEQAQKAIETLNDQPL 69
Query: 61 DVRVIFVDYVRPNR 74
R + V RP +
Sbjct: 70 GGRALGVALARPRK 83
>gi|357143694|ref|XP_003573016.1| PREDICTED: uncharacterized protein LOC100843274 [Brachypodium
distachyon]
Length = 387
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T+++ L AF FG++ + IIMD RSKGY ++ +TE+ AL MN ++
Sbjct: 295 LSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEDAGGAALKAMNGEII 354
Query: 61 DVRVIFVDYVRPN 73
+ +I VD + N
Sbjct: 355 NGWMIVVDVAKTN 367
>gi|389632187|ref|XP_003713746.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
gi|351646079|gb|EHA53939.1| hypothetical protein MGG_04816 [Magnaporthe oryzae 70-15]
Length = 236
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L F ++G V +A ++ D RS+G+G++ + E++AQKA+ MN +
Sbjct: 64 LAWHTEEGTLRQKFEEYGVVEEAVVVKDRDTGRSRGFGFVRYTNEDDAQKAITAMNNVEF 123
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 124 DGRTIRVD 131
>gi|327357360|gb|EGE86217.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Ajellomyces dermatitidis ATCC 18188]
Length = 492
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 196 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERPDAEKALSSMDGEWLGSRAIRC 255
Query: 68 DYV 70
++
Sbjct: 256 NWA 258
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D +N SKG+G++ TEE A++A+ MN MLL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVSD--ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T ++ + G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 365
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F +FGQ+ ++ D G +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ETLNGLFGRFGQILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D +N SKG+G++ TEE A++A+ MN MLL+ R +FV
Sbjct: 90 LYDTFSAFGNILSCKVVSD--ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 145
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T ++ + G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 283 ERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYV 340
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F +FGQ+ ++ D G +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 180 ETLNGLFGRFGQILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 238
>gi|336176064|ref|NP_001229528.1| RNA-binding protein 39 isoform c [Homo sapiens]
gi|296199707|ref|XP_002747281.1| PREDICTED: RNA-binding protein 39 isoform 4 [Callithrix jacchus]
gi|332858228|ref|XP_003316932.1| PREDICTED: uncharacterized protein LOC458443 isoform 2 [Pan
troglodytes]
gi|335304745|ref|XP_003360013.1| PREDICTED: RNA-binding protein 39 [Sus scrofa]
gi|338719242|ref|XP_003363966.1| PREDICTED: RNA-binding protein 39 [Equus caballus]
gi|345789990|ref|XP_003433300.1| PREDICTED: RNA-binding protein 39 [Canis lupus familiaris]
gi|426391511|ref|XP_004062116.1| PREDICTED: RNA-binding protein 39 isoform 3 [Gorilla gorilla
gorilla]
gi|124297482|gb|AAI31544.1| RBM39 protein [Homo sapiens]
gi|194389138|dbj|BAG61586.1| unnamed protein product [Homo sapiens]
Length = 508
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 235 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 294
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 295 AGRPMKVGHV 304
>gi|393784278|ref|ZP_10372444.1| hypothetical protein HMPREF1071_03312 [Bacteroides salyersiae
CL02T12C01]
gi|392666318|gb|EIY59833.1| hypothetical protein HMPREF1071_03312 [Bacteroides salyersiae
CL02T12C01]
Length = 115
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F+++G+V A +I D RSKGYG++ + EE KA+ +N+ +
Sbjct: 8 LSYNISDSDLTELFAEYGEVASARVISDRETGRSKGYGFVEMADEEAGDKAIAALNEAEV 67
Query: 61 DVRVIFVDYVRP 72
D R + V RP
Sbjct: 68 DGRKLAVSVARP 79
>gi|353230165|emb|CCD76336.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 346
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
V+ TT E L++ FSQFG++ ++MD NR +G+G++T +EE A+K + +++ L
Sbjct: 176 VATQTTNEELSEYFSQFGKLESCELMMDKSTNRHRGFGFVTFESEESAEK-VCEIHFHDL 234
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQ 88
+++ P +T+ SL++Q Q
Sbjct: 235 HNKMVEAKKAVPKEVMSTNNSLIKQRHQ 262
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S +TT E L D F ++G++ + I+ D RS+G+G++T S +K L + +L
Sbjct: 85 LSPTTTSEGLRDYFQKYGELREYMIMRDPLTKRSRGFGFITFSDPVCVEKVL-ETAPHIL 143
Query: 61 DVRVI 65
D + I
Sbjct: 144 DYKKI 148
>gi|170106173|ref|XP_001884298.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640644|gb|EDR04908.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 212
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGK-NRSKGYGYMTSSTEEEAQKALVDMNKML 59
+S T + L + FS+FG+V K TI+ D + +RS+G+G++ +T E+A + + ++N +
Sbjct: 15 LSIRTQERDLDEEFSRFGRVEKVTIVYDQRQSDRSRGFGFIKMATVEDATRCIQELNGVD 74
Query: 60 LDVRVIFVDY 69
L+ R I VDY
Sbjct: 75 LNGRRIRVDY 84
>gi|115398367|ref|XP_001214775.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192966|gb|EAU34666.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 701
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
STT E L + FSQ + A ++D +SKGYG++T + ++A+ AL + N + + +
Sbjct: 30 STTTESLTEYFSQSYVIKHALAVLDPETKKSKGYGFVTFADVDDAKAALEEYNGSVFEGK 89
Query: 64 VIFVDYVRPNRHYNTDASL 82
I VDY +P RH D SL
Sbjct: 90 KIKVDYAQP-RHRTIDESL 107
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
LA F FG+V +AT+ G+ G+G++ ++ A+KAL +N +D R + VD+
Sbjct: 150 LAVLFRSFGKVKQATLPKKGGQ--LAGFGFVILRGKKNAEKALAAVNGKEVDGRTLAVDW 207
Query: 70 V 70
Sbjct: 208 A 208
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L DAF+ FG+V+ A +I D +SKGYG+++ EEA++A+ MN L R I ++
Sbjct: 197 LKDAFAPFGEVSDAKVIRDATTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 256
Query: 70 V 70
Sbjct: 257 A 257
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 58 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 115
>gi|255934068|ref|XP_002558315.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582934|emb|CAP81139.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 496
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ EA KAL M+ L R I
Sbjct: 197 EVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRAEADKALNSMDGEWLGSRAIRC 256
Query: 68 DYV 70
++
Sbjct: 257 NWA 259
>gi|194693774|gb|ACF80971.1| unknown [Zea mays]
Length = 133
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 15 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|164662807|ref|XP_001732525.1| hypothetical protein MGL_0300 [Malassezia globosa CBS 7966]
gi|159106428|gb|EDP45311.1| hypothetical protein MGL_0300 [Malassezia globosa CBS 7966]
Length = 410
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L D F++ G+V K I+ D RS+G+G++T E A +A+ +N + L
Sbjct: 139 LSIRTTERDLEDEFARAGEVEKVVIVYDARTGRSRGFGFITMKDIETATRAIEQLNNVEL 198
Query: 61 DVRVIFVDY 69
R I VDY
Sbjct: 199 HGRRIRVDY 207
>gi|119596573|gb|EAW76167.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f [Homo
sapiens]
Length = 423
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 317 AGRPMKVGHV----TERTDAS 333
>gi|332663699|ref|YP_004446487.1| RNP-1 like RNA-binding protein [Haliscomenobacter hydrossis DSM
1100]
gi|332332513|gb|AEE49614.1| RNP-1 like RNA-binding protein [Haliscomenobacter hydrossis DSM
1100]
Length = 208
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F T+ E L +AF FG+V A +IMD +S+G+G++ ++EAQ A+ +N+
Sbjct: 8 LNFGTSSEDLREAFEAFGEVDSAKVIMDHDTGKSRGFGFVEMPNDDEAQAAIDALNETDF 67
Query: 61 DVRVIFVDYVRP 72
D I P
Sbjct: 68 DGNTIVCKKAEP 79
>gi|426241414|ref|XP_004014586.1| PREDICTED: RNA-binding protein 39 isoform 7 [Ovis aries]
Length = 367
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 100 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 159
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 160 TGRPMKVGHV 169
>gi|425768240|gb|EKV06770.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum Pd1]
gi|425770410|gb|EKV08883.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum PHI26]
Length = 482
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ EA KAL M+ L R I
Sbjct: 199 EVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRDRTEADKALNSMDGEWLGSRAIRC 258
Query: 68 DYV 70
++
Sbjct: 259 NWA 261
>gi|355715684|gb|AES05403.1| RNA binding motif protein 39 [Mustela putorius furo]
Length = 271
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 137 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 196
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 197 AGRPMKVGHV----TERTDAS 213
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T EML + FS+ G+V AT+ G +SKGYG++T S+EEE Q A+ N L+ +
Sbjct: 179 SVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQ 238
Query: 64 VIFVD 68
I V+
Sbjct: 239 PIRVN 243
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ T + LA F+ G V +A ++ D RS+ +G++T ST EEA A+ +N+ + R
Sbjct: 80 TVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESLNETEVGGR 139
Query: 64 VIFVD 68
I V+
Sbjct: 140 KIKVN 144
>gi|414878515|tpg|DAA55646.1| TPA: hypothetical protein ZEAMMB73_431003 [Zea mays]
Length = 113
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L D FSQ G V A +I +SKG+G++ S++ +A AL MN +L
Sbjct: 40 LSYDTNETALKDVFSQCGDVIAAKVICHPTSGKSKGFGFVKFSSQNQADAALQKMNGQVL 99
Query: 61 DVRVIFVDY 69
D R I V Y
Sbjct: 100 DGRKIRVHY 108
>gi|387914692|gb|AFK10955.1| u11/U12 small nuclear ribonucleoprotein-like protein [Callorhinchus
milii]
Length = 264
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT++ L D FS+FG V + ++ D+ SK YG++ E KA D NK+L+D
Sbjct: 63 TTEQKLRDTFSRFGDVRRLRLVRDLVTGFSKCYGFIEYREERSLVKAHRDANKLLVDQHE 122
Query: 65 IFVDY 69
+FVD+
Sbjct: 123 LFVDF 127
>gi|294461052|gb|ADE76094.1| unknown [Picea sitchensis]
Length = 150
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T +++L DAFS +G++ + +I++ SKG+G++ ++E +A AL +M+ L
Sbjct: 42 LSFDTNEKVLRDAFSLYGEILEVRVIINRASGLSKGFGFVQFASETDAVNALKEMDGQSL 101
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSPK 91
D R I V++ NT A RQ + PK
Sbjct: 102 DGRNIRVNFA------NTRA---RQDSAPPK 123
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 34.7 bits (78), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F ++G ++ D +SKG+G+++ E+AQ+A+ +MN ++ + ++V
Sbjct: 205 EKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 263
>gi|256082234|ref|XP_002577364.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 263
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
V+ TT E L++ FSQFG++ ++MD NR +G+G++T +EE A+K + +++ L
Sbjct: 69 VATQTTNEELSEYFSQFGKLESCELMMDKSTNRHRGFGFVTFESEESAEK-VCEIHFHDL 127
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQ 85
+++ P +T+ SL++Q
Sbjct: 128 HNKMVEAKKAVPKEVMSTNNSLIKQ 152
>gi|90075670|dbj|BAE87515.1| unnamed protein product [Macaca fascicularis]
Length = 135
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|392876104|gb|AFM86884.1| u11/U12 small nuclear ribonucleoprotein-like protein [Callorhinchus
milii]
Length = 264
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT++ L D FS+FG V + ++ D+ SK YG++ E KA D NK+L+D
Sbjct: 63 TTEQKLRDTFSRFGDVRRLRLVRDLVTGFSKCYGFIEYREERSLVKAHRDANKLLVDQHE 122
Query: 65 IFVDY 69
+FVD+
Sbjct: 123 LFVDF 127
>gi|333999539|ref|YP_004532151.1| RNA-binding protein [Treponema primitia ZAS-2]
gi|333738431|gb|AEF83921.1| RNA-binding protein [Treponema primitia ZAS-2]
Length = 89
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T ++ L FSQ+G V II D SKG+G++ STEEEAQ A+ N L
Sbjct: 10 LSYNTYEDNLRTLFSQYGTVESVKIITDRDTGNSKGFGFVEMSTEEEAQAAIRGTNSTDL 69
Query: 61 DVRVIFVDYV--RPNRH 75
D R I V+ +P R
Sbjct: 70 DGRSIKVNEAMDKPRRE 86
>gi|333379583|ref|ZP_08471304.1| hypothetical protein HMPREF9456_02899 [Dysgonomonas mossii DSM
22836]
gi|332884976|gb|EGK05229.1| hypothetical protein HMPREF9456_02899 [Dysgonomonas mossii DSM
22836]
Length = 96
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT E L + F+ +G+V II D RS+G+G++ + E QKA+ ++N
Sbjct: 8 LNFSTTSESLQELFTAYGEVESTKIITDRETGRSRGFGFVEMPNDAEGQKAIDELNNADY 67
Query: 61 DVRVIFVDYVRP 72
+ + I V RP
Sbjct: 68 EGKTITVTIARP 79
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ + L DAFS FG V A +I D RS+G+G++ S +E A AL M+ L
Sbjct: 43 LSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDL 102
Query: 61 DVRVIFVDYV 70
+ R I V Y
Sbjct: 103 NGRSIRVSYA 112
>gi|328948645|ref|YP_004365982.1| RNP-1 like RNA-binding protein [Treponema succinifaciens DSM
2489]
gi|328448969|gb|AEB14685.1| RNP-1 like RNA-binding protein [Treponema succinifaciens DSM
2489]
Length = 109
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT++ L+ FS +G V ATII+D N+SKG+G++ E KA+ + +
Sbjct: 10 LSYATTQDTLSSLFSAYGNVVSATIIIDRDTNQSKGFGFVEMEDPAETDKAIAKLAGKEV 69
Query: 61 DVRVIFVDYV 70
D R I V+Y
Sbjct: 70 DGRKIRVNYA 79
>gi|46115998|ref|XP_384017.1| hypothetical protein FG03841.1 [Gibberella zeae PH-1]
Length = 1163
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++TT + L +AF +GQ+ + ++ D RS+G+G++T + +EA+ A++ +N+ L
Sbjct: 10 LGWNTTDDSLRNAFQDYGQILDSIVMRDRDTGRSRGFGFVTFGSSQEAETAIISLNEQEL 69
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 70 DGRRIKVN 77
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L +AF FG+V++A II D N++KGYG+++ E+A++A+ MN L R I ++
Sbjct: 148 LKEAFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNW 207
Query: 70 V 70
Sbjct: 208 A 208
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN-KMLLDV 62
+ T E +A F+Q G VTKA II D + + Y ++ S +A +AL MN + LLD
Sbjct: 48 AVTDEFIATLFNQMGAVTKAKIIFDF-QGLADPYAFIEFSDHNQAAQALQSMNGRQLLD- 105
Query: 63 RVIFVDY-VRPNR 74
R + V++ V PN+
Sbjct: 106 RELRVNWAVEPNQ 118
>gi|226478812|emb|CAX72901.1| RNA-binding protein Musashi homolog 2 [Schistosoma japonicum]
Length = 345
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
V+ TT E L++ FSQFG++ ++MD NR +G+G++T +EE A+K + +++ L
Sbjct: 176 VATQTTNEELSEYFSQFGKLESCELMMDKSTNRHRGFGFVTFESEESAEK-VCEIHFHDL 234
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQ 85
+++ P +T+ SL++Q
Sbjct: 235 HNKMVEAKKAVPKEVMSTNNSLIKQ 259
Score = 37.7 bits (86), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S +TT E+L D F ++G++ + I+ D RS+G+G++T S +K L + +L
Sbjct: 85 LSPTTTSEVLRDYFQKYGELREYMIMRDPLTKRSRGFGFVTFSDPMCVEKVL-EAAPHIL 143
Query: 61 DVRVI 65
D + I
Sbjct: 144 DFKKI 148
>gi|426241412|ref|XP_004014585.1| PREDICTED: RNA-binding protein 39 isoform 6 [Ovis aries]
gi|426241416|ref|XP_004014587.1| PREDICTED: RNA-binding protein 39 isoform 8 [Ovis aries]
Length = 373
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 100 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 159
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 160 TGRPMKVGHV 169
>gi|354605413|ref|ZP_09023401.1| hypothetical protein HMPREF9450_02316 [Alistipes indistinctus YIT
12060]
gi|353346955|gb|EHB91233.1| hypothetical protein HMPREF9450_02316 [Alistipes indistinctus YIT
12060]
Length = 109
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T + L + F+ +G+V+ A II D RS+G+G++ + + E Q+A+ +N
Sbjct: 8 LNFATKNDSLQNLFAAYGEVSSANIITDRETGRSRGFGFVEMANDAEGQQAIDALNDTEF 67
Query: 61 DVRVIFVDYVRP 72
+ +VI V+ RP
Sbjct: 68 EGKVIGVNVARP 79
>gi|168699727|ref|ZP_02732004.1| putative RNA-binding protein [Gemmata obscuriglobus UQM 2246]
Length = 113
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%)
Query: 14 FSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72
F Q+G V +A I+MD RS+G+G++ + E+EAQ A+ +N L++ R + V+ +P
Sbjct: 2 FQQYGAVIRAQIVMDRETGRSRGFGFVEMANEQEAQAAIDALNNQLMNGRPLTVNIAKP 60
>gi|32564506|ref|NP_871980.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
gi|373219014|emb|CCD65019.1| Protein TIAR-1, isoform f [Caenorhabditis elegans]
Length = 295
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L +AF FG V+ A +I D +SKGYG+++ EEA++A+ MN L R I
Sbjct: 36 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 95
Query: 68 DYV--RPN-----RHYN 77
++ +P HYN
Sbjct: 96 NWATRKPGDQEKPSHYN 112
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++MD G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 301 EHLRREFSVFGTITSAKVMMDDG--RSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYV 358
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ D FS FG + + D +SKGYG++ E+ A +++ +N MLL+ + +FV
Sbjct: 106 MYDTFSAFGNILSCKVAQD-ETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFV 162
>gi|442771473|gb|AGC72159.1| RNA-binding protein [uncultured bacterium A1Q1_fos_560]
Length = 98
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +STT++ L+D F+ G VT A II D +S+G+G++ S + EAQ A+ +N
Sbjct: 10 LPYSTTEQQLSDLFAVHGAVTSARIITDKFTGQSRGFGFVEMSGDSEAQAAINALNGTQF 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 GGRTLTVNEARP 81
>gi|357119205|ref|XP_003561336.1| PREDICTED: uncharacterized protein LOC100827239 [Brachypodium
distachyon]
Length = 314
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T + L +AF +FG+V A I+++ NR +G+G++T S + A+ +M+ L
Sbjct: 14 LSFHTDERKLEEAFRRFGKVVDAQIMLERHTNRHRGFGFVTFSDPRAVESAISEMHTKEL 73
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D R I V+ P NTD
Sbjct: 74 DGRTISVNRAEPK--MNTD 90
>gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea mays]
Length = 139
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 9 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 68
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 69 DGRNITVN 76
>gi|393245114|gb|EJD52625.1| hypothetical protein AURDEDRAFT_111257 [Auricularia delicata
TFB-10046 SS5]
Length = 103
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT E L AF FGQ+ + ++ D RS+G+G++T + +EA A+ +N L
Sbjct: 10 LSWNTTDETLRSAFQDFGQILDSIVMRDRDTGRSRGFGFVTFGSPQEADSAIQALNDQEL 69
Query: 61 DVRVIFVDY--VRPN 73
D R I V+ RP+
Sbjct: 70 DGRRIKVNLANARPS 84
>gi|406946955|gb|EKD77999.1| glycine-rich RNA-binding protein, partial [uncultured bacterium]
Length = 107
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++TT++ L D FSQ+G + + +I+D RSKG+G++T + ++ + AL N + L
Sbjct: 11 LSYNTTEDGLRDYFSQYGTIEEIKLIIDFNTGRSKGFGFITYGSAQDCENALA-ANGVEL 69
Query: 61 DVRVIFVDYVRPN 73
D R + V+ R +
Sbjct: 70 DGRKLKVNIARDD 82
>gi|395854422|ref|XP_003799690.1| PREDICTED: putative RNA-binding protein 3 [Otolemur garnettii]
Length = 155
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSTFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>gi|393788491|ref|ZP_10376619.1| hypothetical protein HMPREF1068_02899 [Bacteroides nordii
CL02T12C05]
gi|392655108|gb|EIY48753.1| hypothetical protein HMPREF1068_02899 [Bacteroides nordii
CL02T12C05]
Length = 115
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F+++G+V A +I D RSKGYG++ + EE KA+ +N+ +
Sbjct: 8 LSYNISDSDLTELFAEYGEVASARVISDRETGRSKGYGFVEMADEEAGNKAISALNEAEI 67
Query: 61 DVRVIFVDYVRP 72
D R + V RP
Sbjct: 68 DGRKLAVSVARP 79
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ ++ L AF Q G+V +II D RSKG+G++ S++ EAQ A+ +N L
Sbjct: 8 LSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEGLNGKEL 67
Query: 61 DVRVIFVDYVRP 72
R I V+ RP
Sbjct: 68 KGRAINVNEARP 79
>gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 19 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 78
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 79 DGRNITVN 86
>gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [Zea mays]
gi|20257713|gb|AAM16022.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 18 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 77
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 78 DGRNITVN 85
>gi|410055060|ref|XP_003953766.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391517|ref|XP_004062119.1| PREDICTED: RNA-binding protein 39 isoform 6 [Gorilla gorilla
gorilla]
gi|20988961|gb|AAH30493.1| Rbm39 protein [Mus musculus]
gi|34364789|emb|CAE45833.1| hypothetical protein [Homo sapiens]
gi|111598490|gb|AAH82607.1| Rbm39 protein [Mus musculus]
gi|119596570|gb|EAW76164.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_d [Homo
sapiens]
gi|149030835|gb|EDL85862.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_g [Rattus
norvegicus]
Length = 367
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 100 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 159
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 160 AGRPMKVGHV 169
>gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [Zea mays]
gi|20257721|gb|AAM16026.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 18 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 77
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 78 DGRNITVN 85
>gi|260221788|emb|CBA30701.1| Glycine-rich RNA-binding protein GRP1A [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 149
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ +S E L AFSQ G V+ A ++M+ RSKG+G++ ++ EAQ A+ MN
Sbjct: 16 LPYSFRDEDLQQAFSQHGSVSSAKVMMERDTGRSKGFGFVEMGSDAEAQTAISAMNGQQF 75
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 76 GGRGLVVNEARP 87
>gi|255535545|ref|YP_003095916.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
gi|255341741|gb|ACU07854.1| RNA-binding protein [Flavobacteriaceae bacterium 3519-10]
Length = 122
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST +E L D FS+FG+V+ A II D RS+G+G++ S +E+ + A+ +N L
Sbjct: 9 INYSTREESLQDLFSEFGEVSSAKIITDRETGRSRGFGFVEMS-DEDGKNAIEALNGKEL 67
Query: 61 DVRVIFVDYVRP 72
D + + V +P
Sbjct: 68 DGKELNVSEAKP 79
>gi|160883551|ref|ZP_02064554.1| hypothetical protein BACOVA_01523 [Bacteroides ovatus ATCC 8483]
gi|237722796|ref|ZP_04553277.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293371810|ref|ZP_06618220.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|299147641|ref|ZP_07040705.1| RNA-binding protein [Bacteroides sp. 3_1_23]
gi|336416996|ref|ZP_08597327.1| hypothetical protein HMPREF1017_04435 [Bacteroides ovatus
3_8_47FAA]
gi|383113929|ref|ZP_09934696.1| hypothetical protein BSGG_4723 [Bacteroides sp. D2]
gi|423291593|ref|ZP_17270440.1| hypothetical protein HMPREF1069_05483 [Bacteroides ovatus
CL02T12C04]
gi|423298412|ref|ZP_17276470.1| hypothetical protein HMPREF1070_05135 [Bacteroides ovatus
CL03T12C18]
gi|156110964|gb|EDO12709.1| hypothetical protein BACOVA_01523 [Bacteroides ovatus ATCC 8483]
gi|229447318|gb|EEO53109.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292633262|gb|EFF51833.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|298514428|gb|EFI38313.1| RNA-binding protein [Bacteroides sp. 3_1_23]
gi|313697188|gb|EFS34023.1| hypothetical protein BSGG_4723 [Bacteroides sp. D2]
gi|335937040|gb|EGM98950.1| hypothetical protein HMPREF1017_04435 [Bacteroides ovatus
3_8_47FAA]
gi|392662716|gb|EIY56272.1| hypothetical protein HMPREF1069_05483 [Bacteroides ovatus
CL02T12C04]
gi|392663324|gb|EIY56875.1| hypothetical protein HMPREF1070_05135 [Bacteroides ovatus
CL03T12C18]
Length = 99
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L + F++FG+V+ A +I D RS+G+ ++ + E QKA+ ++N +
Sbjct: 8 LSYGTNDADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMPNDTEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVISVSVARP 79
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L DAF+ FG+V+ A +I D +SKGYG+++ EEA++A+ MN L R I ++
Sbjct: 47 LKDAFAPFGEVSDAKVIRDSTTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 106
Query: 70 V 70
Sbjct: 107 A 107
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d [Homo sapiens]
Length = 311
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 25 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 84
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 85 DGRQIRVD 92
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N S+GYG++ T E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGYGFVHFETHEAANRAIATMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + R
Sbjct: 167 KVFVGNFKSRR 177
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 6 TKEMLADAFSQFGQVTKATIIMD-IGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
+ E L + FS FG+ ++ D IG RSKG+G++ ++AQKA+ DMN ++ R+
Sbjct: 203 SNERLQETFSIFGKTLSVKVMTDNIG--RSKGFGFVNFEKHQDAQKAVEDMNGKEINGRM 260
Query: 65 IFV 67
++V
Sbjct: 261 LYV 263
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 276 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYV 333
Query: 68 DYVR---------PNRHYNTDASL--VRQPAQSP 90
+ N H + AS+ V PA P
Sbjct: 334 ALAQRKEERQAHLTNEHMHRTASVRAVPNPASKP 367
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 20 VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ K+ ++ D +N SKGYG++ T+E A++A+ MN MLL+ + +FV
Sbjct: 93 LRKSGVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFV 138
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D + +SKG+G+++ E+AQKA+ ++N L + I+V
Sbjct: 173 EHLKDLFGKFGPTLSVKVMTD-ERGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYV 231
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L +AF FG V++A II D N++KGYG+++ E+A++A+ MN L R I ++
Sbjct: 144 LREAFLAFGDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRRTIRTNW 203
Query: 70 V 70
Sbjct: 204 A 204
>gi|195621182|gb|ACG32421.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 15 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L +AF+++G+V +A +IMD RS+G+G++T E+A A+ ++ L
Sbjct: 47 LSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDL 106
Query: 61 DVRVIFVDYV 70
D R I Y
Sbjct: 107 DGRRIRCSYA 116
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L +AF+++G+V +A +IMD RS+G+G++T E+A A+ ++ L
Sbjct: 47 LSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAIQALDGQDL 106
Query: 61 DVRVIFVDYV 70
D R I Y
Sbjct: 107 DGRRIRCSYA 116
>gi|410340767|gb|JAA39330.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340769|gb|JAA39331.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340771|gb|JAA39332.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340773|gb|JAA39333.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340775|gb|JAA39334.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340777|gb|JAA39335.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFPIPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|34365067|emb|CAE45890.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 100 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 159
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 160 AGRPMKVGHV 169
>gi|410055058|ref|XP_003316934.2| PREDICTED: uncharacterized protein LOC458443 isoform 4 [Pan
troglodytes]
gi|410055062|ref|XP_003953767.1| PREDICTED: uncharacterized protein LOC458443 [Pan troglodytes]
gi|426391515|ref|XP_004062118.1| PREDICTED: RNA-binding protein 39 isoform 5 [Gorilla gorilla
gorilla]
gi|426391519|ref|XP_004062120.1| PREDICTED: RNA-binding protein 39 isoform 7 [Gorilla gorilla
gorilla]
gi|119596566|gb|EAW76160.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
gi|119596571|gb|EAW76165.1| RNA-binding region (RNP1, RRM) containing 2, isoform CRA_b [Homo
sapiens]
Length = 373
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 100 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 159
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 160 AGRPMKVGHV 169
>gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea mays]
Length = 150
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 20 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 79
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 80 DGRNITVN 87
>gi|32564504|ref|NP_495123.2| Protein TIAR-1, isoform e [Caenorhabditis elegans]
gi|373219013|emb|CCD65018.1| Protein TIAR-1, isoform e [Caenorhabditis elegans]
Length = 305
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L +AF FG V+ A +I D +SKGYG+++ EEA++A+ MN L R I
Sbjct: 46 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 105
Query: 68 DYV--RPN-----RHYN 77
++ +P HYN
Sbjct: 106 NWATRKPGDQEKPSHYN 122
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ T EML DAF + G V A ++ D RS+GYG++ ST+EE +A+ +N +
Sbjct: 232 LSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEI 291
Query: 61 DVRVIFVDYVRPNRH 75
+ R I V+ R+
Sbjct: 292 EGREIRVNLALGKRY 306
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T E A++A+ MN MLL+ R
Sbjct: 36 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETHEAAERAIEKMNGMLLNDR 93
Query: 64 VIFV 67
+FV
Sbjct: 94 KVFV 97
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++
Sbjct: 235 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIV 285
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS++G ++ D +SKG+G+++ E+AQ+A+ +MN ++ + ++V
Sbjct: 132 EKLKEIFSKYGPALSIRVMTDE-SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYV 190
>gi|118489085|gb|ABK96349.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 171
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT ++L +AFSQ+G++ + II D RS+G+G++T E+ + A+ MN L
Sbjct: 14 LAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMRDAIDGMNGQDL 73
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 74 DGRNITVN 81
>gi|118481677|gb|ABK92779.1| unknown [Populus trichocarpa]
gi|118481702|gb|ABK92791.1| unknown [Populus trichocarpa]
gi|118482754|gb|ABK93295.1| unknown [Populus trichocarpa]
gi|118483202|gb|ABK93505.1| unknown [Populus trichocarpa]
Length = 170
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT ++L +AFSQ+G++ + II D RS+G+G++T E+ + A+ MN L
Sbjct: 14 LAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMRDAIDGMNGQDL 73
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 74 DGRNITVN 81
>gi|167520490|ref|XP_001744584.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776915|gb|EDQ90533.1| predicted protein [Monosiga brevicollis MX1]
Length = 86
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L F FGQ+ K II D RS+G+G++T ++E+AQ+A +N +
Sbjct: 9 LSRDTDERQLDSIFGDFGQLEKCIIIHDRQNGRSRGFGFVTFVSDEDAQRAREKLNGARI 68
Query: 61 DVRVIFVDY 69
D R + VD+
Sbjct: 69 DGRNVRVDF 77
>gi|348503003|ref|XP_003439056.1| PREDICTED: RNA-binding protein 39-like [Oreochromis niloticus]
Length = 498
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +N L
Sbjct: 234 LHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFEL 293
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 294 AGRPMKVGHV 303
>gi|31873732|emb|CAD97833.1| hypothetical protein [Homo sapiens]
Length = 373
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 100 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 159
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 160 AGRPMKVGHV 169
>gi|221041852|dbj|BAH12603.1| unnamed protein product [Homo sapiens]
Length = 337
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 100 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 159
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
R + V +V TDAS
Sbjct: 160 AGRPMKVGHVTE----RTDAS 176
>gi|432865706|ref|XP_004070573.1| PREDICTED: RNA-binding protein 39-like [Oryzias latipes]
Length = 516
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T+EML F FG++ ++MD RSKGYG+++ + E A+KAL +N L
Sbjct: 253 LHFNITEEMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFEL 312
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 313 AGRPMKVGHV 322
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D + SKGYG++ TEE A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ERGSKGYGFVHFETEEAANRAIETMNGMLLNDR 166
Query: 64 VIFVDYVR 71
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + F+ FG+ ++ D + RS+G+G++ + E+AQKA+ +MN L+ +VI+V
Sbjct: 205 EKLKEVFAAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYV 263
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L F+ +G +T A ++ D +S+G+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDERLRKEFAPYGTITSAKVMTD--GPQSRGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
>gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea mays]
Length = 147
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 17 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 76
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 77 DGRNITVN 84
>gi|169772913|ref|XP_001820925.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|238490830|ref|XP_002376652.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
gi|83768786|dbj|BAE58923.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697065|gb|EED53406.1| heterogeneous nuclear ribonucleoprotein G, putative [Aspergillus
flavus NRRL3357]
Length = 125
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T E L FS+FG V A ++ D RS+G+G++T S + EA A+ +N+ L
Sbjct: 11 LSWNTNDESLRQTFSEFGNVLDAIVMKDRETGRSRGFGFVTFSAQTEADAAIGGLNEQEL 70
Query: 61 DVRVIFVDY--VRP 72
D R I V+ RP
Sbjct: 71 DGRRIRVNLANARP 84
>gi|406956570|gb|EKD84644.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 81
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L + F+Q G V A ++ D RS+G+G++ ST+EEAQ A+ ++N ++ R I V+
Sbjct: 15 LGEIFAQAGNVVSAQVVKDRETGRSRGFGFVEMSTDEEAQNAVKNLNGADVEGRKIVVNI 74
Query: 70 VRP 72
RP
Sbjct: 75 ARP 77
>gi|256082942|ref|XP_002577710.1| splicing factor [Schistosoma mansoni]
gi|360043601|emb|CCD81147.1| putative splicing factor [Schistosoma mansoni]
Length = 327
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T+EML F FG++ +I D NRS+GYG++T ++A+KAL +N L
Sbjct: 74 LHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFEL 133
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V++V Y ++L
Sbjct: 134 AGRPMKVNHVTERSEYACLSAL 155
>gi|389639074|ref|XP_003717170.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|351642989|gb|EHA50851.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Magnaporthe oryzae 70-15]
gi|440475727|gb|ELQ44390.1| nucleolysin TIA-1 [Magnaporthe oryzae Y34]
gi|440486439|gb|ELQ66302.1| nucleolysin TIA-1 [Magnaporthe oryzae P131]
Length = 479
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 190 EVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRC 249
Query: 68 DYV 70
++
Sbjct: 250 NWA 252
>gi|149605642|ref|XP_001519834.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa
protein-like [Ornithorhynchus anatinus]
Length = 275
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ TT+E L + FS++G + K ++ D+ SKGY ++ E KA D N +++
Sbjct: 58 LNLQTTEEKLKETFSRYGDIRKLRLVRDLVTGFSKGYAFIEYKEERSLLKAYRDANGLVI 117
Query: 61 DVRVIFVDY 69
D IFVDY
Sbjct: 118 DQHEIFVDY 126
>gi|198282085|ref|NP_001105572.1| glycine-rich RNA binding protein [Zea mays]
gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea mays]
gi|194692162|gb|ACF80165.1| unknown [Zea mays]
gi|195623052|gb|ACG33356.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 145
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 15 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|153208628|ref|ZP_01946885.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
gi|120575889|gb|EAX32513.1| RNA-binding protein [Coxiella burnetii 'MSU Goat Q177']
Length = 103
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 11 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 70
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 71 QGRKIRVNIAREN 83
>gi|387914322|gb|AFK10770.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392876160|gb|AFM86912.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 133
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFST ++ L + FS++GQ+++ +I D S+G+G++T +A+ AL+ MN +
Sbjct: 12 LSFSTDEQSLEEVFSEYGQISEVRVIKDRDTQLSRGFGFITFENPGDAKDALLAMNGKSI 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRQIRVD 79
>gi|328858559|gb|EGG07671.1| hypothetical protein MELLADRAFT_71659 [Melampsora larici-populina
98AG31]
Length = 163
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 45/69 (65%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ST L AF+Q+G+V A ++ D RS+G+G++T S +++AQ A+ +N+ +
Sbjct: 12 LAWSTDTNSLTQAFNQYGEVVDAIVMQDRETGRSRGFGFITFSNQDQAQAAIDALNEADV 71
Query: 61 DVRVIFVDY 69
D R I V++
Sbjct: 72 DGRNIRVNF 80
>gi|195618802|gb|ACG31231.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195625478|gb|ACG34569.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 15 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|165919016|ref|ZP_02219102.1| RNA-binding protein [Coxiella burnetii Q321]
gi|165917271|gb|EDR35875.1| RNA-binding protein [Coxiella burnetii Q321]
Length = 107
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 11 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 70
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 71 QGRKIRVNIAREN 83
>gi|161830439|ref|YP_001597044.1| RNA-binding protein [Coxiella burnetii RSA 331]
gi|161762306|gb|ABX77948.1| RNA-binding protein [Coxiella burnetii RSA 331]
Length = 107
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 11 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 70
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 71 QGRKIRVNIAREN 83
>gi|170084123|ref|XP_001873285.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650837|gb|EDR15077.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 422
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+LA AFS FG ++ A ++ D+ +S+GYG++ + +A++A+ MN L R I V
Sbjct: 116 EVLAKAFSAFGTMSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRV 175
Query: 68 DYV 70
++
Sbjct: 176 NWA 178
>gi|42562492|ref|NP_174613.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|51970938|dbj|BAD44161.1| unknown protein [Arabidopsis thaliana]
gi|332193475|gb|AEE31596.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 245
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+++ T K L + F QFG + +A +I D RSKGYG++T E AQKA VD ++
Sbjct: 14 LAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVI 72
>gi|393245975|gb|EJD53484.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 288
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 48/76 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L + F+++G V K TI+ D +RS+G+G++ +T E+AQ+ + +N + L
Sbjct: 94 LSIRTTERDLDEEFARYGAVEKVTIVYDQRSDRSRGFGFIRMATVEDAQRCIDKLNGIEL 153
Query: 61 DVRVIFVDYVRPNRHY 76
+ R I VD+ +R +
Sbjct: 154 NGRRIRVDFSVTDRAH 169
>gi|388858494|emb|CCF47992.1| uncharacterized protein [Ustilago hordei]
Length = 315
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+TT++ L FS+ G VT A I+ RS GYG++T STE EAQ A+ +NK +
Sbjct: 33 LAFATTEDELKTLFSEAGNVTHAQIVTR--GTRSLGYGFVTFSTEAEAQTAIQLLNKRDV 90
Query: 61 DVRVIFVDYVRP 72
R I V+ +P
Sbjct: 91 GGREISVESAKP 102
Score = 38.1 bits (87), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++FSTT + L AFS F +V A ++ +RSKG+G++ E Q+A+ +
Sbjct: 226 LAFSTTDDSLKAAFSGF-KVKSAHVVKRRSSDRSKGFGFVDFEDNAEQQRAVASAQGKQI 284
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQS 89
D R + + N QP Q+
Sbjct: 285 DGREVTLQVAVRNDQSEKTEDEAAQPTQA 313
>gi|256082940|ref|XP_002577709.1| splicing factor [Schistosoma mansoni]
gi|360043602|emb|CCD81148.1| putative splicing factor [Schistosoma mansoni]
Length = 463
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ ++ T+EML F FG++ +I D NRS+GYG++T ++A+KAL +N L
Sbjct: 210 LHYNITEEMLKGIFEPFGKIEDIKLIKDPTTNRSQGYGFVTYVNSDDAKKALDQLNGFEL 269
Query: 61 DVRVIFVDYVRPNRHYNTDASL 82
R + V++V Y ++L
Sbjct: 270 AGRPMKVNHVTERSEYACLSAL 291
>gi|158429066|pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ ++MD RSKGYG++T S E A+KAL +N L
Sbjct: 34 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93
Query: 61 DVRVIFVDYV 70
R + V +V
Sbjct: 94 AGRPMKVGHV 103
>gi|169861389|ref|XP_001837329.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|116502051|gb|EAU84946.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 569
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + LA F+ G++ AT+ MD +S+G+GY+ +T E AQKAL ++N +
Sbjct: 334 LSWNVDNDWLASEFASCGEIESATVQMDRNTGKSRGFGYVHFTTVEAAQKAL-ELNGKEI 392
Query: 61 DVRVIFVDYVRPNRHYNTDAS 81
D R I VD P N DA+
Sbjct: 393 DNRPIKVDISTP---RNPDAA 410
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF+T+++ + F+ +G V + D R KG+GY+ E A+KA N L
Sbjct: 434 LSFNTSEDSVWSLFNDYG-VKSVRLPTDRESGRPKGFGYVEFEDVEGAKKAFEANNGADL 492
Query: 61 DVRVIFVDYVRP 72
D R I +DY +P
Sbjct: 493 DGRPIRLDYSQP 504
>gi|284108895|ref|ZP_06386469.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283829840|gb|EFC34132.1| RNP-1 like RNA-binding protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 90
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+STT + L D F+Q G V A ++ D RS+G+G++ + EEA +A+ +N
Sbjct: 10 LSYSTTDQELQDLFAQHGTVQSANVVTDRYTGRSRGFGFVEMGSGEEAGQAIEALNGTDF 69
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 70 QGRSLVVNEARP 81
>gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea mays]
Length = 156
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 25 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 84
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 85 DGRNITVN 92
>gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 25 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 84
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 85 DGRNITVN 92
>gi|42571735|ref|NP_973958.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|14532532|gb|AAK63994.1| At1g33470/F10C21_14 [Arabidopsis thaliana]
gi|18655391|gb|AAL76151.1| At1g33470/F10C21_14 [Arabidopsis thaliana]
gi|332193476|gb|AEE31597.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 244
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+++ T K L + F QFG + +A +I D RSKGYG++T E AQKA VD ++
Sbjct: 14 LAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVI 72
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T+E L FSQFG V +I D S GYG++ + EEA+ A+ MN L+ + +
Sbjct: 36 TEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYGFVNYGSAEEAEHAIQKMNGTTLESKTL 95
Query: 66 FVDYVRP 72
V Y RP
Sbjct: 96 KVSYARP 102
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 9 MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
+L FS FG +T +I D+ K YG++ + E+A A++ +N + D + + V
Sbjct: 327 LLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVNMKSYEDACSAIMTLNGYVHDGKTLQVS 386
Query: 69 Y 69
+
Sbjct: 387 F 387
>gi|299530322|ref|ZP_07043747.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
gi|298721693|gb|EFI62625.1| RNA-binding region RNP-1 [Comamonas testosteroni S44]
Length = 113
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
+S T L F++FG VT A ++MD RSKG+ ++ ++ +E Q A+ ++ M +D
Sbjct: 12 YSVTDSNLRSNFAEFGTVTSAKVMMDRETGRSKGFAFVEMTSADECQAAISALHGMSVDG 71
Query: 63 RVIFVDYVRP 72
R I V+ +P
Sbjct: 72 RSIVVNLAKP 81
>gi|246771225|gb|ACS94937.1| putative glycine-rich RNA-binding protein [Tamarix hispida]
Length = 143
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L DAFS FG+VT A +I D RS+G+G++ E A AL M+ + L
Sbjct: 42 LSWGTDDQSLKDAFSSFGEVTDAKVITDRETGRSRGFGFVNFVDNEAAGSALSSMDGVEL 101
Query: 61 DVRVIFVDYVR 71
+ R I V + +
Sbjct: 102 NGRSIRVSFAQ 112
>gi|392575524|gb|EIW68657.1| hypothetical protein TREMEDRAFT_71869 [Tremella mesenterica DSM
1558]
Length = 389
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
++LA AF FG +++A ++ D+ +S+GYG+++ E+A++A+ MN L R I V
Sbjct: 121 DVLAKAFGAFGSMSEARVMWDMNSGKSRGYGFLSFRKREDAEQAINTMNGEWLGSRAIRV 180
Query: 68 DYV 70
++
Sbjct: 181 NWA 183
>gi|302496006|ref|XP_003010008.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
gi|291173542|gb|EFE29368.1| hypothetical protein ARB_03747 [Arthroderma benhamiae CBS 112371]
Length = 224
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATI------IMDIGKNRSKGYGYMTSSTEEEAQKALVD 54
+++ TT + L + FS+FG + +A I + D NRS+G+G++ S++ EA AL
Sbjct: 80 LAWHTTDDTLREGFSKFGTIEEALISHVQIVVKDRDTNRSRGFGFVRFSSDSEADAALTA 139
Query: 55 MNKMLLDVRVIFVD 68
MN D RVI VD
Sbjct: 140 MNNQEFDGRVIRVD 153
>gi|311780287|gb|ADQ08684.1| putative glycine-rich RNA-binding protein 1 [Malus hupehensis]
Length = 164
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T E L AFSQ+G++ ++ II D RS+G+G++T +E+ + A+ MN L
Sbjct: 15 LAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMRDAIEGMNGQNL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|296142019|gb|ADG96008.1| putative glycine-rich RNA-binding protein 1 [Malus prunifolia]
Length = 171
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T E L AFSQ+G++ ++ II D RS+G+G++T +E+ + A+ MN L
Sbjct: 15 LAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMRDAIEGMNGQNL 74
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 75 DGRNITVN 82
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ L F ++G + A +IMD +RSKGYG++ E+A KA+ +N +
Sbjct: 8 LSYDVNDADLNTFFKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAISKLNGVEY 67
Query: 61 DVRVIFVDYVRPNRHYNTDA 80
D R I V RP + N ++
Sbjct: 68 DGRTISVSEARPRQERNNNS 87
>gi|302756609|ref|XP_002961728.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
gi|300170387|gb|EFJ36988.1| hypothetical protein SELMODRAFT_140819 [Selaginella
moellendorffii]
Length = 130
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ L AF+ +G+VT+A +IMD RS+G+G++T + EA+ A+ M+ L
Sbjct: 17 LAWGVDDGTLRTAFANYGEVTEARVIMDRETGRSRGFGFVTFENDNEAKAAVQGMDGHEL 76
Query: 61 DVRVIFVDYV--RPN 73
R I VDY RP+
Sbjct: 77 GGRSIRVDYASDRPS 91
>gi|224059524|ref|XP_002299889.1| predicted protein [Populus trichocarpa]
gi|222847147|gb|EEE84694.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 5 TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
TT L FS FG V++A ++++ R KG+G++T +E +A KAL MN +++ R+
Sbjct: 18 TTNHELKRLFSPFGAVSEARLVVESKTLRPKGFGFVTFESEADAHKALKAMNGRIVNGRL 77
Query: 65 IFVDYVR 71
IFV+ +
Sbjct: 78 IFVEVAK 84
>gi|242015973|ref|XP_002428613.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
gi|212513276|gb|EEB15875.1| RNA-binding region-containing protein, putative [Pediculus humanus
corporis]
Length = 593
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T + ++A+KAL +N L
Sbjct: 272 LHFNITEDMLRGIFEPFGKIDSIQLIMDPETGRSKGYGFITFHSADDAKKALEQLNGFEL 331
Query: 61 DVRVIFVDYV 70
R + V V
Sbjct: 332 AGRPMKVGNV 341
>gi|170058744|ref|XP_001865056.1| splicing factor [Culex quinquefasciatus]
gi|167877732|gb|EDS41115.1| splicing factor [Culex quinquefasciatus]
Length = 546
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV 62
F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 298 FNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFHNADDAKKALEQLNGFELAG 357
Query: 63 RVIFVDYVRPNRHYNTDASL 82
R + V V T ASL
Sbjct: 358 RPMKVGNVTERLDVTTHASL 377
>gi|356526497|ref|XP_003531854.1| PREDICTED: uncharacterized protein LOC100818300 [Glycine max]
Length = 245
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST L ++F+++G+V +IMD RS+G+G++T +T E+A A+ M+ L
Sbjct: 47 ISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASSAIQGMDGQDL 106
Query: 61 DVRVIFVDYV 70
R I V+Y
Sbjct: 107 HGRRIRVNYA 116
>gi|443924183|gb|ELU43247.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 498
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+LA AF+ FG ++ A ++ D+ +S+GYG++ + +A++A+ MN L R I V
Sbjct: 151 EVLAKAFAAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRV 210
Query: 68 DYV 70
++
Sbjct: 211 NWA 213
>gi|393788074|ref|ZP_10376205.1| hypothetical protein HMPREF1068_02485 [Bacteroides nordii
CL02T12C05]
gi|392656287|gb|EIY49926.1| hypothetical protein HMPREF1068_02485 [Bacteroides nordii
CL02T12C05]
Length = 97
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFS L + F+++G+V+ A +I+D +S+G+ ++ + + E QKA+ ++N +
Sbjct: 8 LSFSANDADLNNLFAEYGEVSSAKVILDRETGKSRGFAFVEMTNDTEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVIAVSIARP 79
>gi|440473946|gb|ELQ42715.1| hypothetical protein OOU_Y34scaffold00194g28 [Magnaporthe oryzae
Y34]
gi|440489138|gb|ELQ68816.1| hypothetical protein OOW_P131scaffold00217g29 [Magnaporthe oryzae
P131]
Length = 182
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L F ++G V +A ++ D RS+G+G++ + E++AQKA+ MN +
Sbjct: 10 LAWHTEEGTLRQKFEEYGVVEEAVVVKDRDTGRSRGFGFVRYTNEDDAQKAITAMNNVEF 69
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 70 DGRTIRVD 77
>gi|17531963|ref|NP_495120.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
gi|373219011|emb|CCD65016.1| Protein TIAR-1, isoform b [Caenorhabditis elegans]
Length = 376
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L +AF FG V+ A +I D +SKGYG+++ EEA++A+ MN L R I
Sbjct: 117 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 176
Query: 68 DYV--RPN-----RHYN 77
++ +P HYN
Sbjct: 177 NWATRKPGDQEKPSHYN 193
>gi|392869588|gb|EJB11873.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides immitis RS]
Length = 466
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L
Sbjct: 191 LSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWL 250
Query: 61 DVRVIFVDYV 70
R I ++
Sbjct: 251 GSRAIRCNWA 260
>gi|296423176|ref|XP_002841131.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637365|emb|CAZ85322.1| unnamed protein product [Tuber melanosporum]
Length = 498
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 190 EVLMQAFSTFGSVSEARVMWDMKTGRSRGYGFVAFRDRADAEKALSSMDGEWLGSRAIRC 249
Query: 68 DYV 70
++
Sbjct: 250 NWA 252
>gi|224105391|ref|XP_002313795.1| predicted protein [Populus trichocarpa]
gi|222850203|gb|EEE87750.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT ++L +AFSQ+G++ + II D RS+G+G++T E+ + A+ MN L
Sbjct: 13 LAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMRDAIDGMNGQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F T + L +AFS++G + K ++ D RS+G+G++T E+A+ A+ MN +
Sbjct: 12 LCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSV 71
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 72 DGRMIRVD 79
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ +E+L + FS+ G + A I+ D RS+G+G++T ST+ EA+ A+ +N L
Sbjct: 223 LSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKEL 282
Query: 61 DVRVIFVDYVRPNRH 75
+ R + VD +R+
Sbjct: 283 EGRAMRVDLALSSRN 297
>gi|284022113|sp|Q925G0.2|RBM3_RAT RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
Length = 155
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A + MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F T + L +AFS++G + K ++ D RS+G+G++T E+A+ A+ MN +
Sbjct: 12 LCFDTDETSLEEAFSKYGNIAKVDVVRDRETRRSRGFGFVTFENPEDAKDAMAAMNGKSV 71
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 72 DGRMIRVD 79
>gi|157121117|ref|XP_001659833.1| hypothetical protein AaeL_AAEL009224 [Aedes aegypti]
gi|108874697|gb|EAT38922.1| AAEL009224-PA [Aedes aegypti]
Length = 280
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L D F++FG + KAT+++D RS+G+G++ + E+A+ A N + +
Sbjct: 89 LSIYTTESELYDVFTKFGPLKKATVVIDAKTGRSRGFGFVYFDSTEDAKVAHAQANGIEI 148
Query: 61 DVRVIFVDY 69
R I VDY
Sbjct: 149 GDRRIRVDY 157
>gi|426201609|gb|EKV51532.1| hypothetical protein AGABI2DRAFT_189771 [Agaricus bisporus var.
bisporus H97]
Length = 469
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
++LA AFS FG ++ A ++ D+ +S+GYG++ + +A++A+ MN L R I V
Sbjct: 121 DVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRV 180
Query: 68 DYVRPNRHYNTDASLVRQ 85
++ N+ A V+Q
Sbjct: 181 NWA--NQKTQGGAPAVQQ 196
>gi|302338833|ref|YP_003804039.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
gi|301636018|gb|ADK81445.1| RNP-1 like RNA-binding protein [Spirochaeta smaragdinae DSM
11293]
Length = 93
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S+T+ L D F Q+GQV A I++D RS+G+G++ ++ A+ A+ ++
Sbjct: 10 LSYSSTEPGLEDLFGQYGQVVSAKIVLDRETKRSRGFGFVEMEQDDAAEAAISALDGYEF 69
Query: 61 DVRVIFVDYV-----RPNRHYNTD 79
D R + V+ RP R ++ D
Sbjct: 70 DGRRLRVNEAMERERRPRRDFHRD 93
>gi|296421441|ref|XP_002840273.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636488|emb|CAZ84464.1| unnamed protein product [Tuber melanosporum]
Length = 91
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T + L F +FG V +A ++ D RS+G+G++ S++EEA A+ +MN +
Sbjct: 9 LAWHTDDDALRQKFQEFGNVEEAVVVKDRDTGRSRGFGFVRYSSDEEATAAMDNMNDVEF 68
Query: 61 DVRVIFVDYVRPNRH 75
D R I VD R
Sbjct: 69 DGRRIRVDKASDRRQ 83
>gi|303314025|ref|XP_003067021.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106689|gb|EER24876.1| oligouridylate binding protein ,putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320039295|gb|EFW21229.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides posadasii str. Silveira]
Length = 483
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 196 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALSSMDGEWLGSRAIRC 255
Query: 68 DYV 70
++
Sbjct: 256 NWA 258
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 24 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 83
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 84 DGRNITVN 91
>gi|74199920|dbj|BAE20776.1| unnamed protein product [Mus musculus]
Length = 266
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS FG + ++ D +N SKG+G++ TEE A++A+ MN MLL+ R +FV
Sbjct: 115 LYDTFSAFGNILSCKVVSD--ENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFV 170
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L F +FGQ+ ++ D G +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ETLNGLFGRFGQILSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYV 263
>gi|224071049|ref|XP_002303346.1| predicted protein [Populus trichocarpa]
gi|222840778|gb|EEE78325.1| predicted protein [Populus trichocarpa]
Length = 164
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ S ++ L FS FG++ + ++ D RSK Y ++ +++++A AL +M++ L
Sbjct: 61 IGHSISEATLQKEFSNFGEIAEVKLVKDETIKRSKPYAFIQYTSQDDAILALENMDRKTL 120
Query: 61 DVRVIFVDYVRPNR 74
D R+IFVD +P +
Sbjct: 121 DGRLIFVDLAKPGK 134
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L +AF FG V+ A +I D +SKGYG+++ EEA++A+ MN L R I
Sbjct: 189 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 248
Query: 68 DYV--RPN-----RHYN 77
++ +P HYN
Sbjct: 249 NWATRKPGDQEKPSHYN 265
>gi|157121119|ref|XP_001659834.1| hypothetical protein AaeL_AAEL009224 [Aedes aegypti]
gi|108874698|gb|EAT38923.1| AAEL009224-PB [Aedes aegypti]
Length = 279
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S TT+ L D F++FG + KAT+++D RS+G+G++ + E+A+ A N + +
Sbjct: 89 LSIYTTESELYDVFTKFGPLKKATVVIDAKTGRSRGFGFVYFDSTEDAKVAHAQANGIEI 148
Query: 61 DVRVIFVDY 69
R I VDY
Sbjct: 149 GDRRIRVDY 157
>gi|409083337|gb|EKM83694.1| hypothetical protein AGABI1DRAFT_110331 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 444
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
++LA AFS FG ++ A ++ D+ +S+GYG++ + +A++A+ MN L R I V
Sbjct: 121 DVLAKAFSAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRV 180
Query: 68 DYVRPNRHYNTDASLVRQ 85
++ N+ A V+Q
Sbjct: 181 NWA--NQKTQGGAPAVQQ 196
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+L AFS FG V++A ++ D+ RS+GYG++ +A+KAL M+ L R I
Sbjct: 192 EVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRC 251
Query: 68 DYV 70
++
Sbjct: 252 NWA 254
>gi|375144998|ref|YP_005007439.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361059044|gb|AEV98035.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 82
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SFS + L FS++G+V +I+D NRS+G+ ++ + A+KA+ ++N + +
Sbjct: 8 LSFSVQNDDLRKHFSEYGEVDSVNVIIDKVTNRSRGFAFIEMKDNQAAEKAIRELNGLTI 67
Query: 61 DVRVIFVDYVRPNR 74
D R I V+ R R
Sbjct: 68 DNRAIKVNEAREKR 81
>gi|82248148|sp|Q9PTX2.1|CIRBP_RANCA RecName: Full=Cold-inducible RNA-binding protein; Short=BFCIRP;
AltName: Full=Glycine-rich RNA-binding protein CIRP
gi|6682989|dbj|BAA88978.1| BFCIRP [Rana catesbeiana]
Length = 164
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T ++ L FS++GQ+ + ++ D RS+G+G++T E+A+ A+ MN +
Sbjct: 13 LSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>gi|441500694|ref|ZP_20982848.1| RNA-binding protein [Fulvivirga imtechensis AK7]
gi|441435535|gb|ELR68925.1| RNA-binding protein [Fulvivirga imtechensis AK7]
Length = 84
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ TT E L F FG+V+ A +I D RSKG+G++ ++ A++A+ +N+
Sbjct: 8 LNYRTTSEELQRQFEAFGEVSSAKVIFDRETQRSKGFGFVEMPDDDAAREAIKALNETEF 67
Query: 61 DVRVIFVDYVRP 72
D R I V RP
Sbjct: 68 DGRTIVVKEARP 79
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 182 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 239
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 79 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 137
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 31 KNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+N SKGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 8 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 44
>gi|148235865|ref|NP_001079794.1| cold-inducible RNA-binding protein B [Xenopus laevis]
gi|82247034|sp|Q9DED4.1|CIRBB_XENLA RecName: Full=Cold-inducible RNA-binding protein B; AltName:
Full=Cold-inducible RNA-binding protein 2;
Short=xCIRP2; AltName: Full=Glycine-rich RNA-binding
protein CIRP-B
gi|11761319|dbj|BAB19129.1| cold-inducible RNA binding protein 2 [Xenopus laevis]
gi|32450232|gb|AAH54250.1| Xcirp2 protein [Xenopus laevis]
Length = 166
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F T +E L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 12 LNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAV 71
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 72 DGRQIRVD 79
>gi|195626882|gb|ACG35271.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 203
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 72 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 131
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 132 DGRNITVN 139
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F T + L +AFS++G + K ++ D RS+G+G++T E+A+ A+ MN +
Sbjct: 12 LCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSV 71
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 72 DGRMIRVD 79
>gi|209364023|ref|YP_001424629.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
gi|207081956|gb|ABS78255.2| glycine-rich RNA-binding protein [Coxiella burnetii Dugway
5J108-111]
Length = 112
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 16 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 75
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 76 QGRKIRVNIAREN 88
>gi|116787064|gb|ABK24360.1| unknown [Picea sitchensis]
Length = 365
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++ T+ + L DAF Q+G++ + +IMD +S+G+G++T + AQKAL + +K +
Sbjct: 76 LAWETSSQTLCDAFEQYGEIEEGAVIMDKASGKSRGFGFVTFKHMDSAQKALKEPSKT-I 134
Query: 61 DVRV 64
D R+
Sbjct: 135 DGRI 138
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L + FS++G++ + ++ D N+S+G+ ++T T E ++AL + NK +
Sbjct: 166 LSYDTANDKLLEVFSKYGEIEEGSVAYDKNTNKSRGFAFVTFKTVEATKRALKEPNKT-I 224
Query: 61 DVRVIFVDYVRPNRHYNTDASLVRQPAQSPK 91
D R + V + + QPA SP+
Sbjct: 225 DGRTVTVKLAADGQKEKPQS----QPAVSPQ 251
>gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 24 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 83
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 84 DGRNITVN 91
>gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [Zea mays]
gi|20257671|gb|AAM16001.1| glycine-rich RNA binding protein [Zea mays]
gi|20257677|gb|AAM16004.1| glycine-rich RNA binding protein [Zea mays]
gi|20257685|gb|AAM16008.1| glycine-rich RNA binding protein [Zea mays]
gi|20257703|gb|AAM16017.1| glycine-rich RNA binding protein [Zea mays]
gi|20257717|gb|AAM16024.1| glycine-rich RNA binding protein [Zea mays]
gi|20257719|gb|AAM16025.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++T L +AFS +G+V ++ II+D RS+G+G++T STE+ + A+ MN L
Sbjct: 24 LAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAIEGMNGKEL 83
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 84 DGRNITVN 91
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D + S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAITTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN +L +
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRILGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FS+FG++ ++ D S+G+G++ EEAQKA++DMN + R+++V
Sbjct: 207 LQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYV 263
>gi|421497038|ref|ZP_15944229.1| RNA-binding protein [Aeromonas media WS]
gi|407183931|gb|EKE57797.1| RNA-binding protein [Aeromonas media WS]
Length = 81
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T + L + FSQFGQV K II+D +SKG+G++ +A+KA+ +++ + R I
Sbjct: 2 TADELTNVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAELHGTEIGGRTI 61
Query: 66 FVDYVRPNRHYNTDASLVR 84
V+ +P TDA R
Sbjct: 62 TVNQAKP----KTDAPRGR 76
>gi|392404677|ref|YP_006441289.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390612631|gb|AFM13783.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 141
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++ T E L AF FGQVT I+ D RS+G+ ++ E AQ A+ +MN L
Sbjct: 8 LAYNATDEELRSAFEAFGQVTSVKIVRDRDTGRSRGFAFVEMEDGEGAQNAVAEMNGKDL 67
Query: 61 DVRVIFVDYVRP 72
R + V+ RP
Sbjct: 68 KGRNLVVNEARP 79
>gi|321252695|ref|XP_003192495.1| hypothetical protein CGB_B2920W [Cryptococcus gattii WM276]
gi|317458963|gb|ADV20708.1| Hypothetical protein CGB_B2920W [Cryptococcus gattii WM276]
Length = 286
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S T + L D F ++G V K I+ D +RS+G+G++T T E+A + + +N + L
Sbjct: 89 LSIRTRERDLEDEFMRYGDVEKVVIVYDQRTDRSRGFGFITMRTTEDAARCIEKLNGLSL 148
Query: 61 DVRVIFVDY 69
R I VDY
Sbjct: 149 HGRNIRVDY 157
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQQAISTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FSQFG++ ++ D S+G+G++ EEAQKA++DMN + R ++V
Sbjct: 207 LQDLFSQFGKLLSVKVMKD-NNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYV 263
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S E L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ +
Sbjct: 304 SIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIIGTK 361
Query: 64 VIFV 67
++V
Sbjct: 362 PLYV 365
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG++ +I D +N SKGYG++ T+E A KA+ MN MLL+
Sbjct: 143 SIDNKALYDTFSTFGRILSCKVISD--ENGSKGYGFVHFETQESAGKAIEKMNGMLLNNL 200
Query: 64 VIFVDYVRPNR 74
+FV + R
Sbjct: 201 KVFVGRFKSRR 211
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ ++A KA +MN L+ + ++V
Sbjct: 342 EHLRKEFSPFGTITSAKVMMENG--RSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYV 399
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L + F+++G ++ D RSKG+G+++ + E+AQ A+ DMN L+ + I+V
Sbjct: 239 QRLTEIFAKYGPTLSVKVMTD-DCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYV 297
Query: 68 DYVRPNRHYNTD 79
+ R T+
Sbjct: 298 GRAQKKRERQTE 309
>gi|334705246|ref|ZP_08521112.1| RNA-binding protein [Aeromonas caviae Ae398]
Length = 81
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
T + L FSQFGQV K II+D +SKG+G++ EA+KA+ +++ + R I
Sbjct: 2 TADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGEAEKAIAELHGTEVGGRTI 61
Query: 66 FVDYVRPNRHYNTDASLVR 84
V+ +P TDA R
Sbjct: 62 TVNQAKP----KTDAPRGR 76
>gi|297846324|ref|XP_002891043.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336885|gb|EFH67302.1| RNA recognition motif-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 246
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+++ T K L + F QFG + +A +I D RSKGYG++T E AQKA VD ++
Sbjct: 14 LAWETHKISLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVI 72
>gi|383118922|ref|ZP_09939662.1| hypothetical protein BSHG_3968 [Bacteroides sp. 3_2_5]
gi|251944121|gb|EES84630.1| hypothetical protein BSHG_3968 [Bacteroides sp. 3_2_5]
Length = 122
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ + L + F +FG+V A I+MD RSKG+G++ +EE A+ +++ +
Sbjct: 8 ISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIAALHEKEI 67
Query: 61 DVRVIFVDYVRP 72
D + + V RP
Sbjct: 68 DGKTLAVSVARP 79
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 252 LHFNITEDMLRGIFEPFGKIDNIQLIMDPXTGRSKGYGFLTFRNADDAKKALEQLNGFEL 311
Query: 61 DVRVIFVDYV 70
R + V V
Sbjct: 312 AGRPMKVGNV 321
>gi|356519124|ref|XP_003528224.1| PREDICTED: uncharacterized protein LOC100801928 [Glycine max]
Length = 656
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VS+S + L + SQ+GQV A IIMD R +G+G++T S +EA +AL ++ L
Sbjct: 49 VSYSIDAQSLGEICSQYGQVVDARIIMDRETGRHRGFGFITYSNVDEASRALQALDGQDL 108
Query: 61 DVRVIFVDYVRPNRH 75
D R + V + H
Sbjct: 109 DGRRVEVKFAIERSH 123
>gi|29347297|ref|NP_810800.1| RNA-binding protein rbpA [Bacteroides thetaiotaomicron VPI-5482]
gi|298385201|ref|ZP_06994760.1| RNA-binding protein [Bacteroides sp. 1_1_14]
gi|383122091|ref|ZP_09942790.1| hypothetical protein BSIG_5245 [Bacteroides sp. 1_1_6]
gi|29339196|gb|AAO76994.1| putative RNA-binding protein rbpA [Bacteroides thetaiotaomicron
VPI-5482]
gi|251837563|gb|EES65655.1| hypothetical protein BSIG_5245 [Bacteroides sp. 1_1_6]
gi|298262345|gb|EFI05210.1| RNA-binding protein [Bacteroides sp. 1_1_14]
Length = 100
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T L + F+++G+V+ A +I D RS+G+ ++ + + E QKA+ ++N +
Sbjct: 8 LSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DQKVISVSVARP 79
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST L ++F+++G+V +IMD RS+G+G++T +T E+A A+ M+ L
Sbjct: 47 ISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQGMDGQDL 106
Query: 61 DVRVIFVDYV 70
R I V+Y
Sbjct: 107 HGRRIRVNYA 116
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ST L ++F+++G+V +IMD RS+G+G++T +T E+A A+ M+ L
Sbjct: 47 ISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQGMDGQDL 106
Query: 61 DVRVIFVDYV 70
R I V+Y
Sbjct: 107 HGRRIRVNYA 116
>gi|111162637|gb|ABH07505.1| glycine-rich RNA-binding protein [Nicotiana attenuata]
Length = 152
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT + L DAFSQFG++ + II D RS+G+G++T E+ + A+ M L
Sbjct: 13 LAWATTDQTLGDAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMRDAIEGMKGQDL 72
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 73 DGRNITVN 80
>gi|357111298|ref|XP_003557451.1| PREDICTED: uncharacterized protein LOC100823909 [Brachypodium
distachyon]
Length = 258
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ TT+ L AFS FG+V + ++ + RS+G+G++T S A A+ +M+ L
Sbjct: 14 LSWDTTERTLERAFSDFGKVIETQVVTERDTGRSRGFGFVTFSEPRAADAAIREMHNGEL 73
Query: 61 DVRVIFVDYVRPNRHYNTD 79
D R I V+ +P NTD
Sbjct: 74 DGRTISVNKAQP--RMNTD 90
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 276 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 20 VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ K+ ++ D +N KGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 93 LRKSGVVCD--ENGPKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ MN L+ + I+V
Sbjct: 173 EHLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYV 231
>gi|195116809|ref|XP_002002944.1| GI10246 [Drosophila mojavensis]
gi|193913519|gb|EDW12386.1| GI10246 [Drosophila mojavensis]
Length = 617
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F+ T++ML F FG++ +IMD RSKGYG++T ++A+KAL +N L
Sbjct: 365 LHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 424
Query: 61 DVRVIFVDYVRPNRHYNT 78
R + V V NT
Sbjct: 425 AGRPMKVGNVTERLDMNT 442
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N SKGYG++ T+E A++ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERVSEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ L +AF FG V+ A +I D +SKGYG+++ EEA++A+ MN L R I
Sbjct: 149 QKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRT 208
Query: 68 DYV--RPN-----RHYN 77
++ +P HYN
Sbjct: 209 NWATRKPGDQEKPSHYN 225
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ T++ +A F+Q G VTK +I D G N Y ++ S +A +AL MNK LL R
Sbjct: 56 TVTEDFIATLFNQIGSVTKTKVIFD-GSNDP--YAFVEFSDHGQASQALQTMNKRLLLDR 112
Query: 64 VIFVDY-VRPNR 74
+ V++ V P +
Sbjct: 113 EMKVNWAVEPGQ 124
>gi|392927018|ref|NP_509705.3| Protein TIAR-3 [Caenorhabditis elegans]
gi|211970450|emb|CAB01717.3| Protein TIAR-3 [Caenorhabditis elegans]
Length = 450
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
+ E+L F++FG+V++A +I D+ +SKGYG+++ ++ A+ A+ MN + R +
Sbjct: 237 SNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAV 296
Query: 66 FVDY-VRPNRHYNTD 79
++ R N N D
Sbjct: 297 RTNWAARKNSEENRD 311
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 276 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 20 VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
+ K+ ++ D +N SKGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 93 LRKSGVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
Score = 41.2 bits (95), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQKA+ +MN L+ + I+V
Sbjct: 173 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 231
>gi|12322386|gb|AAG51218.1|AC051630_15 RNA-binding protein; 68390-68829 [Arabidopsis thaliana]
Length = 117
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVD 54
+++ T K L + F QFG + +A +I D RSKGYG++T E AQKA VD
Sbjct: 14 LAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>gi|331230317|ref|XP_003327823.1| hypothetical protein PGTG_08590 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|403168138|ref|XP_003889766.1| hypothetical protein, variant 2 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|403168140|ref|XP_003889767.1| hypothetical protein, variant 1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306813|gb|EFP83404.1| hypothetical protein PGTG_08590 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167366|gb|EHS63397.1| hypothetical protein, variant 2 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167367|gb|EHS63398.1| hypothetical protein, variant 1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 471
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E+LA AF+ FG ++ A ++ D+ +S+GYG++ + +A++A+ MN L R I V
Sbjct: 216 EVLAKAFAAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIRV 275
Query: 68 DYV 70
++
Sbjct: 276 NWA 278
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N S+GYG++ T E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGYGFVHFETHEAATRAIETMNGMLLNDR 166
Query: 64 VIFVDYVR 71
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 326 LRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 381
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 17/74 (22%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQK----------------ALV 53
L + FS+FG+ ++MD RSKG+G++ EEAQK A+
Sbjct: 207 LREIFSKFGKTLSVKVMMD-STGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVA 265
Query: 54 DMNKMLLDVRVIFV 67
DMN ++ R+++V
Sbjct: 266 DMNGKEINGRIVYV 279
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N S+GYG++ T E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGYGFVHFETHEAATRAIETMNGMLLNDR 166
Query: 64 VIFVDYVR 71
+FV + +
Sbjct: 167 KVFVGHFK 174
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L + FS+FG+ ++MD RSKG+G++ EEAQKA+ DMN ++ R+++V
Sbjct: 207 LREIFSRFGKTLSVKVMMD-NNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYV 263
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS +G +T A ++ + G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPYGTITSAKVMTEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|1934994|emb|CAA73034.1| SGRP-1 [Solanum commersonii]
Length = 162
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++++TT L+DAFS +G+V + II D RS+G+G++T E+ ++A+ MN L
Sbjct: 14 LAWATTDRTLSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKSMKEAISGMNGSEL 73
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 74 DGRNITVN 81
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+GYG++ T+E A +A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L + FS FG ++MD RS+G+G++ EEAQKA+ +MN ++ R+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 310 LRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S T E+L AF ++G V A ++ D RS+GYG++ ST+ E + A+ +N + L
Sbjct: 208 LSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVEL 267
Query: 61 DVRVIFVDYVRPNR 74
+ R + V + R
Sbjct: 268 EGRAMRVSLAQGKR 281
>gi|312129340|ref|YP_003996680.1| rnp-1 like RNA-binding protein [Leadbetterella byssophila DSM
17132]
gi|311905886|gb|ADQ16327.1| RNP-1 like RNA-binding protein [Leadbetterella byssophila DSM
17132]
Length = 87
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T L +AF FG+V A +IMD RSKG+G++ + EA A+ +N L
Sbjct: 8 LSFDTQDAGLREAFENFGEVKSAKVIMDNYTGRSKGFGFVEMNDHAEASNAIRSLNDSEL 67
Query: 61 DVRVIFV 67
D R I V
Sbjct: 68 DGRTIVV 74
>gi|258568356|ref|XP_002584922.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906368|gb|EEP80769.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 745
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T E L + FSQ + AT + D + KGYG++T + E+AQ+AL ++N + D R
Sbjct: 56 SATTESLTEYFSQSYPIKHATAVADPQTKQCKGYGFVTFTDVEDAQRALEELNGSIFDGR 115
Query: 64 VIFVDYVRPNR 74
I ++ P R
Sbjct: 116 KIVIEVAEPRR 126
Score = 37.7 bits (86), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E LA F +G+V A I R G+G++ ++ A+KA+ +N LD R + V
Sbjct: 174 EQLAVLFRSYGKVKHADIPRK--GTRHSGFGFIVMRGKKNAEKAIEGVNGKELDGRTLAV 231
Query: 68 DY-----VRPNRHYNTDAS 81
D+ V N H +TD S
Sbjct: 232 DWAVDKEVWQNLHQSTDDS 250
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
L D FSQFG++ ++ D S+ +G++ EEAQKA+V MN + R+++
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
>gi|74006873|ref|XP_863171.1| PREDICTED: uncharacterized protein LOC609457 isoform 2 [Canis
lupus familiaris]
Length = 162
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D F FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I VD+
Sbjct: 73 DGRQIRVDHA 82
>gi|327276115|ref|XP_003222816.1| PREDICTED: u11/U12 small nuclear ribonucleoprotein 35 kDa
protein-like [Anolis carolinensis]
Length = 260
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++ TT++ L + FS++G + K ++ D+ SKGY ++ E KA D N++++
Sbjct: 58 LNLQTTEDKLKEVFSRYGDIRKIRLVRDLVTGFSKGYAFVEYKEERALIKAHRDANRLVI 117
Query: 61 DVRVIFVDY 69
D R IFVD+
Sbjct: 118 DQREIFVDF 126
>gi|325279405|ref|YP_004251947.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM
20712]
gi|324311214|gb|ADY31767.1| RNP-1 like RNA-binding protein [Odoribacter splanchnicus DSM
20712]
Length = 106
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 43/72 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ L D F ++G+++ A +I D RS+G+G++ + + + QKA+ ++N+
Sbjct: 8 LSYAVNDGDLKDLFGEYGEISSAKVITDRETGRSRGFGFVEMADDAQGQKAIDELNQAEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DGKVINVTVARP 79
>gi|218132093|ref|ZP_03460897.1| hypothetical protein BACEGG_03720 [Bacteroides eggerthii DSM
20697]
gi|317477123|ref|ZP_07936364.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
gi|217985743|gb|EEC52084.1| hypothetical protein BACEGG_03720 [Bacteroides eggerthii DSM
20697]
gi|316906666|gb|EFV28379.1| RNA recognition domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
Length = 99
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ L + F++FG+V+ A +I D RS+G+ ++ + + E QKA+ ++N +
Sbjct: 8 LSYGINNADLTNLFAEFGEVSSAKVIFDRETGRSRGFAFVEMNNDTEGQKAIDELNGVEY 67
Query: 61 DVRVIFVDYVRP 72
D +VI V RP
Sbjct: 68 DNKVISVSVARP 79
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
L D FSQFG++ ++ D S+ +G++ EEAQKA+V MN + R+++
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
>gi|197128622|gb|ACH45120.1| putative cold inducible RNA binding protein variant 1
[Taeniopygia guttata]
Length = 171
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF T +E L FS++GQ+++ ++ D RS+G+G++T ++A+ A++ MN +
Sbjct: 13 LSFDTNEESLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 73 DGRQIRVD 80
>gi|375146726|ref|YP_005009167.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
gi|361060772|gb|AEV99763.1| RNP-1 like RNA-binding protein [Niastella koreensis GR20-10]
Length = 104
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF E L D F+ +G+VT A +I D RS+G+G++ S E ++KA+ +++ +
Sbjct: 8 LSFDVQDEDLKDFFAPYGEVTSAKVITDRETGRSRGFGFVEMSDEAASKKAIAELDGATV 67
Query: 61 DVRVIFVDYVRP 72
+ R I V +P
Sbjct: 68 ENRTISVSVAKP 79
>gi|330928516|ref|XP_003302299.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
gi|311322459|gb|EFQ89618.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
Length = 403
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VSF + E + + F+++G +T+ ++ D KG+GY+ S+++EA AL +N +
Sbjct: 326 VSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDI 385
Query: 61 DVRVIFVDYVRP 72
R I +DY P
Sbjct: 386 GGRAIRIDYATP 397
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ ++ L F FG++ +I D R+KG+GY+ S +A KA +M++ L
Sbjct: 224 MSWNIDEDWLRREFEGFGEIVGCRVITDRETGRAKGFGYVEFSNAADAAKAQKEMHEYEL 283
Query: 61 DVRVIFVDYVRP 72
D R + VD+ P
Sbjct: 284 DGRQLNVDFSTP 295
>gi|145298735|ref|YP_001141576.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851507|gb|ABO89828.1| RNA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 92
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L FSQFGQV K II+D +SKG+G++ +A+KA+ ++ +
Sbjct: 8 LSYRMTADELTTVFSQFGQVDKVDIIIDRDTGQSKGFGFIEMPVNGDAEKAIAGLHGTEI 67
Query: 61 DVRVIFVDYVRPNRHYNTDASLVR 84
R I V+ +P TDA R
Sbjct: 68 GGRTITVNQAKP----KTDAPRGR 87
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
+ T L +AF+Q GQV + D+ RS GYGY+ +T ++A +AL ++N M L+ R
Sbjct: 55 TVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGR 114
Query: 64 VIFVDY 69
I V Y
Sbjct: 115 AIRVMY 120
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L + FS FG + + +D +SKGYG++ T+E AQ A+ +N MLL+ +
Sbjct: 143 SIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDK 201
Query: 64 VIFV 67
++V
Sbjct: 202 QVYV 205
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S T + L + F+ FG +T ++ D S+G G++ ST EEA +A+ +MN ++ +
Sbjct: 337 SVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTK 395
Query: 64 VIFV 67
++V
Sbjct: 396 PLYV 399
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S S + E L F +FG VT + +IM G+ +SKG+G++ ++A +A+ +N
Sbjct: 231 LSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTF 289
Query: 61 DVRVIFV 67
D + FV
Sbjct: 290 DDKEWFV 296
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L FS +G +T A ++ + G SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIF 66
L D FSQFG++ ++ D S+ +G++ EEAQKA+V MN + R+++
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLY 262
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+S E L + F+ G V A +IM+ G +RS+GYGY+ A+KAL +M +
Sbjct: 156 LSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKALKEMQGKEI 215
Query: 61 DVRVIFVD 68
D R I VD
Sbjct: 216 DGRPINVD 223
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+SF ++ L + F +FG++ I + KG+GY+ + E+A+KAL + +
Sbjct: 257 LSFDADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESI 316
Query: 61 DVRVIFVDYVRP 72
+ R + +D+ P
Sbjct: 317 NDRPVRLDFSTP 328
>gi|392402152|ref|YP_006438764.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
gi|390610106|gb|AFM11258.1| RNP-1 like RNA-binding protein [Turneriella parva DSM 21527]
Length = 117
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+++S T++ L AFS+FG V A +IMD R KG+ ++ + E KA+ MN +
Sbjct: 8 LAYSVTEQDLKQAFSEFGTVQSAKMIMDRDTGRPKGFAFVEMENKSEGIKAISGMNGRSM 67
Query: 61 DVRVIFVDYVRP 72
+ R I V+ RP
Sbjct: 68 NDREIVVNEARP 79
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S + L +AF FG V+ A +I D +SKGYG+++ EEA++A+ MN L
Sbjct: 140 LSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWL 199
Query: 61 DVRVIFVDYV--RPN-----RHYN 77
R I ++ +P HYN
Sbjct: 200 GRRTIRTNWATRKPGDQEKPTHYN 223
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S +++++A F+Q G VTK +I D G N Y ++ +A +AL MNK LL R
Sbjct: 54 SVSEDLIATLFNQIGSVTKTKVIFD-GANDP--YAFVEFLDHSQASQALQTMNKRLLLDR 110
Query: 64 VIFVDY-VRPNRH 75
+ V++ V P +
Sbjct: 111 EMKVNWAVEPGQQ 123
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
VSF + E + + F+++G +T+ ++ D KG+GY+ S+++EA AL +N +
Sbjct: 330 VSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALEALNGQDI 389
Query: 61 DVRVIFVDYVRP 72
R I +DY P
Sbjct: 390 GGRAIRIDYATP 401
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++ ++ L F FG++ +I D R+KG+GY+ + +A KA +M++ L
Sbjct: 228 MSWNIDEDWLRREFEGFGEIVGCRVITDRETGRAKGFGYVEFANAADAAKAQKEMHEYEL 287
Query: 61 DVRVIFVDYVRP 72
D R + VD+ P
Sbjct: 288 DGRQLNVDFSTP 299
>gi|300175323|emb|CBK20634.2| unnamed protein product [Blastocystis hominis]
Length = 385
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML 59
+SF+ ++E + + F Q+G++ + TI+ + +S+G+GY+ STEE A+ ALV+ KML
Sbjct: 260 LSFAASEEDVQERFQQYGEIVEVTIVRN-NHGKSRGFGYVEFSTEEAAESALVENGKML 317
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + +++
Sbjct: 377 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYI 434
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ SKGYG++ T + A++A+ MN MLL+ R
Sbjct: 178 SIDNKALFDTFSAFGNILSCKVVCD--EHGSKGYGFVHFETRDAAERAIDKMNGMLLNDR 235
Query: 64 VIFV 67
+FV
Sbjct: 236 KVFV 239
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L F +FG ++ D SKG+G++ E+AQKA+ +MN L+ + I+V
Sbjct: 276 LKRLFGKFGPALSVKVMTD-ESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYV 332
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+ F T + L +AFS++G + K ++ D RS+G+G++T E+A+ A+ MN +
Sbjct: 12 LCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAKDAMAAMNGKSV 71
Query: 61 DVRVIFVD 68
D R+I VD
Sbjct: 72 DGRMIRVD 79
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 276 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 333
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 34 SKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
SKGYG++ T+E A++A+ MN MLL+ R +FV
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 138
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L D F +FG ++ D +SKG+G+++ E+AQ MN L+ + I+V
Sbjct: 173 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYV 231
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 41/63 (65%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
L +AFS++G++ +AT++ D RS+G+G++ + + + KA+ +MN +D R I V+
Sbjct: 22 LREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQEMNGADMDGRNIVVNE 81
Query: 70 VRP 72
RP
Sbjct: 82 ARP 84
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D ++ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 121 SIDNKALYDTFSTFGNILSCKVVCD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 178
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 179 KVFVGHFKSRR 189
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FSQFG++ ++ D S+ +G++ EEAQKA+V MN + R+++
Sbjct: 219 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 275
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++M+ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 ERLRKEFSPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Query: 68 DYVRPNRHYNTDASLVRQ 85
+ R A L+ Q
Sbjct: 366 ALAQ--RKEERQAHLITQ 381
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + ++ D +N S+GYG++ T + A++A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSRGYGFVHFETHDAAERAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FS+FG T ++ D +G+G+++ E+AQKA+ +MN L+ R++FV
Sbjct: 205 EKLKEIFSKFGNATSVRVMTDESGG-GRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFV 263
>gi|302757806|ref|XP_002962326.1| hypothetical protein SELMODRAFT_78193 [Selaginella
moellendorffii]
gi|300169187|gb|EFJ35789.1| hypothetical protein SELMODRAFT_78193 [Selaginella
moellendorffii]
Length = 89
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T+ ++ +AFS FG+V + I+ D +SKGYG++T +E +AQ AL M+ L
Sbjct: 2 LSWGLTEGIVQEAFSSFGEVREVRIVKDRETGKSKGYGFITYVSEADAQDALQAMDGKNL 61
Query: 61 DVRVIFVDY 69
+ R I V++
Sbjct: 62 NGREIRVNF 70
>gi|194466189|gb|ACF74325.1| unknown [Arachis hypogaea]
Length = 112
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + +L DAF Q G++ + +I D +SKGYG++ +TE A +M+K ++
Sbjct: 39 LSYDTNETVLRDAFEQHGELIEVKVICDHVTGKSKGYGFVRFTTETSAATGRKEMHKKII 98
Query: 61 DVRVIFVDY 69
D R I V Y
Sbjct: 99 DGRRIRVCY 107
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S + L D FS FG + + D K+ S+G+G++ T E AQ+A+ MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVACD--KHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166
Query: 64 VIFVDYVRPNR 74
+FV + + R
Sbjct: 167 KVFVGHFKSRR 177
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L D FSQFG++ ++ D RS+ +G++ EEAQKA+V MN + R+++
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-NSGRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
L FS +G +T A ++ + + SKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 310 LRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
S ++L D FS FG + ++ D +N SKGY ++ T+E A KA+ MN MLL+ R
Sbjct: 109 SIDNKVLYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166
Query: 64 VIFV 67
+FV
Sbjct: 167 KVFV 170
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L FS FG +T A ++++ G RSKG+G++ S+ EEA KA+ +MN ++ + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
E L + FSQFG+ ++ D +SKG+G+++ E+A KA+ +MN + ++IFV
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263
Query: 68 DYVRPNRHYNTDASLVRQ 85
R + A L R+
Sbjct: 264 G--RAQKKVERQAELKRK 279
>gi|409051430|gb|EKM60906.1| hypothetical protein PHACADRAFT_247129 [Phanerochaete carnosa
HHB-10118-sp]
Length = 425
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S E+LA AF+ FG ++ A ++ D+ +S+GYG++ + +A++A+ MN L
Sbjct: 111 LSPEVNDEVLAKAFAAFGTLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWL 170
Query: 61 DVRVIFVDYV 70
R I V++
Sbjct: 171 GSRAIRVNWA 180
>gi|399886791|gb|AFP52931.1| RBP1 [Hordeum vulgare]
Length = 162
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S++T L AFS FG++ A II D RS+G+G+++ S E+ Q A+ MN L
Sbjct: 16 LSWNTDDRGLEAAFSSFGEILDAKIINDRETGRSRGFGFVSFSNEQAMQDAIEGMNGKEL 75
Query: 61 DVRVIFVD 68
D R I V+
Sbjct: 76 DGRSIVVN 83
>gi|212212428|ref|YP_002303364.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
gi|212010838|gb|ACJ18219.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 121
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 25 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 84
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 85 QGRKIRVNIAREN 97
>gi|212218608|ref|YP_002305395.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
gi|215919123|ref|NP_820178.2| nucleic acid binding domain-containing protein [Coxiella burnetii
RSA 493]
gi|206584008|gb|AAO90692.2| glycine-rich RNA-binding protein [Coxiella burnetii RSA 493]
gi|212012870|gb|ACJ20250.1| glycine-rich RNA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 117
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
+S+ T + L F Q+G++ +A +IMD RSKG+ ++T T++ AQ+A+ N + L
Sbjct: 25 LSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKANGIDL 84
Query: 61 DVRVIFVDYVRPN 73
R I V+ R N
Sbjct: 85 QGRKIRVNIAREN 97
>gi|355704773|gb|EHH30698.1| RNA-binding motif protein 3 [Macaca mulatta]
Length = 157
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
++F+T ++ L D FS FG +++ ++ D RS+G+G++T + E A A+ MN L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72
Query: 61 DVRVIFVDYV 70
D R I V +V
Sbjct: 73 DGRQIRVAHV 82
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,271,358,659
Number of Sequences: 23463169
Number of extensions: 39901523
Number of successful extensions: 131484
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10429
Number of HSP's successfully gapped in prelim test: 2292
Number of HSP's that attempted gapping in prelim test: 112432
Number of HSP's gapped (non-prelim): 20378
length of query: 93
length of database: 8,064,228,071
effective HSP length: 63
effective length of query: 30
effective length of database: 6,586,048,424
effective search space: 197581452720
effective search space used: 197581452720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)