BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042899
         (93 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
          PE=2 SV=1
          Length = 166

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++F TT+E L   FS++GQV +  ++ D    RS+G+G++T    E+A+ A++ MN   +
Sbjct: 13 LNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 73 DGRQIRVD 80


>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
          Length = 153

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++F+T ++ L D FS FG +++  ++ D    RS+G+G++T +  E A  A+  MN   L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESL 72

Query: 61 DVRVIFVDYV 70
          D R I VD+ 
Sbjct: 73 DGRQIRVDHA 82


>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
          Length = 631

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L  AFS FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D  S FG +    ++ D  +N SKGYG++   T E A++A+  MN MLL+ R
Sbjct: 109 SINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L D F +FG      ++ D    +SKG+G+++    E+AQKA+ +MN   L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263


>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
           SV=1
          Length = 636

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGYG++   T+E A++A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   FS FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L + F +FG      ++ D    +SKG+G+++    E+AQKA+ +MN   L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263


>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
          Length = 636

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGYG++   T+E A++A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   FS FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L D F +FG      ++ D    +SKG+G+++    E+AQKA+ +MN   L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263


>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
          Length = 636

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGYG++   T+E A++A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   FS FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L D F +FG      ++ D    +SKG+G+++    E+AQKA+ +MN   L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263


>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
          Length = 636

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGYG++   T+E A++A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   FS FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L D F +FG      ++ D    +SKG+G+++    E+AQKA+ +MN   L+ + I+V
Sbjct: 205 ERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263


>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
          Length = 636

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGYG++   T+E A++A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   FS FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L + F +FG      ++ D    +SKG+G+++    E+AQKA+ +MN   L+ + I+V
Sbjct: 205 ERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263


>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
          Length = 157

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++F+T ++ L D FS FG +++  ++ D    RS+G+G++T +  E A  A+  MN   L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESL 72

Query: 61 DVRVIFVDYV 70
          D R I VD+ 
Sbjct: 73 DGRQIRVDHA 82


>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
           laevis GN=snrnp35 PE=2 SV=1
          Length = 272

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 40/69 (57%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           +S  TT+E L + FS++G + +  ++ D     SKGY ++    E    KA  D NK+++
Sbjct: 58  LSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANKLVI 117

Query: 61  DVRVIFVDY 69
           D R +FVD+
Sbjct: 118 DQREVFVDF 126


>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
          PE=2 SV=1
          Length = 168

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++++T  E L  AF+ FGQV  + +I D    RS+G+G++T S+E+    A+ +MN   L
Sbjct: 15 LAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKEL 74

Query: 61 DVRVIFVD 68
          D R I V+
Sbjct: 75 DGRNITVN 82


>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
           PE=2 SV=1
          Length = 633

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGYG++   T+E A++A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   F+ FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L + F Q+G      ++ D    +S+G+G+++    E+AQKA+ DMN   L+ + IFV
Sbjct: 205 ERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFV 263


>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
           thaliana GN=RBG4 PE=2 SV=1
          Length = 136

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           +S+ T    L  AF+ FG+VT+AT+I D    RS+G+G+++ S E+ A  A+ +M+   L
Sbjct: 42  LSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKEL 101

Query: 61  DVRVIFVD 68
           + R I V+
Sbjct: 102 NGRQIRVN 109


>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
          Length = 524

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           + F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +N   L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316

Query: 61  DVRVIFVDYV 70
             R + V +V
Sbjct: 317 AGRPMKVGHV 326


>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
           PE=1 SV=3
          Length = 633

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGYG++   T+E A++A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIDKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   F  FG +T A ++M+ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 ERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365



 Score = 37.4 bits (85), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L + F ++G      ++ D    +SKG+G+++    E+AQKA+ +MN   ++ + +FV
Sbjct: 205 ERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFV 263


>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
          Length = 530

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           + F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +N   L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316

Query: 61  DVRVIFVDYV 70
             R + V +V
Sbjct: 317 AGRPMKVGHV 326


>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
          Length = 530

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           + F+ T++ML   F  FG++    ++MD    RSKGYG++T S  E A+KAL  +N   L
Sbjct: 257 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 316

Query: 61  DVRVIFVDYV 70
             R + V +V
Sbjct: 317 AGRPMKVGHV 326


>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
          Length = 157

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++++T  E L  AFSQFG +T + II D    RS+G+G++T   E+  + A+  MN   L
Sbjct: 13 LAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQEL 72

Query: 61 DVRVIFVD 68
          D R I V+
Sbjct: 73 DGRNITVN 80


>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
          SV=2
          Length = 155

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++F+T ++ L D FS FG +++  ++ D    RS+G+G++T +  E A   +  MN   L
Sbjct: 13 LNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESL 72

Query: 61 DVRVIFVDYV 70
          D R I VD+ 
Sbjct: 73 DGRQIRVDHA 82


>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
          GN=cirbp PE=2 SV=1
          Length = 164

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          +SF T ++ L   FS++GQ+ +  ++ D    RS+G+G++T    E+A+ A+  MN   +
Sbjct: 13 LSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTV 72

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 73 DGRQIRVD 80


>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
          PE=1 SV=1
          Length = 166

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++F T +E L   FS++GQ+++  ++ D    RS+G+G++T    ++A+ A++ MN   +
Sbjct: 12 LNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAV 71

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 72 DGRQIRVD 79


>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
           GN=epabp PE=2 SV=1
          Length = 629

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  ++ S+GYG++   T+E A +A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166

Query: 64  VIFVDYVRPNR 74
            +FV + +  R
Sbjct: 167 KVFVGHFKSRR 177



 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L + FS FG      ++MD    RS+G+G++     EEAQKA+ +MN   ++ R+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263



 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L   FS +G +T A ++ + G   SKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 310 LRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365


>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
          GN=GRP1 PE=2 SV=1
          Length = 142

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)

Query: 10 LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
          L  AFS +G+V ++ II+D    RS+G+G++T STEE  + A+  MN   LD R I V+
Sbjct: 3  LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61


>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
           GN=epabp-a PE=1 SV=2
          Length = 629

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  ++ S+GYG++   T E A +A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--EHGSRGYGFVHFETHEAANRAIQTMNGMLLNDR 166

Query: 64  VIFVDYVRPNR 74
            +FV + +  R
Sbjct: 167 KVFVGHFKSRR 177



 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L + FS FG      ++MD    RS+G+G++     EEAQKA+ +MN   ++ R+I+V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYV 263



 Score = 40.8 bits (94), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L   F  +G +T A ++ + G   SKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 310 LRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365


>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
          GN=RBG8 PE=1 SV=1
          Length = 169

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++++T  E L   FSQFG V  + II D    RS+G+G++T   E+  + A+ +MN   L
Sbjct: 13 LAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKEL 72

Query: 61 DVRVIFVD 68
          D RVI V+
Sbjct: 73 DGRVITVN 80


>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
          Length = 326

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 6   TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
           T+E L   FS  G+V  A +I D     S GYG++   T ++A++A+  +N + L  + I
Sbjct: 32  TQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTI 91

Query: 66  FVDYVRPNRHYNTDASL 82
            V Y RP+     DA+L
Sbjct: 92  KVSYARPSSEVIKDANL 108



 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 9   MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
           +L   F  FG VT   +I D   N+ KG+G++T +  EEA  A+  +N   L  +++ V 
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318

Query: 69  Y 69
           +
Sbjct: 319 F 319



 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/51 (25%), Positives = 29/51 (56%)

Query: 6   TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
           T++ + D FS+FG++  + +++D     S+G  ++      EA++A+   N
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN 168


>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
          Length = 644

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +N SKGY ++   T+E A KA+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDR 166

Query: 64  VIFV 67
            +FV
Sbjct: 167 KVFV 170



 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 2/60 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   FS FG +T A ++++ G  RSKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365



 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L + FSQFG+     ++ D    +SKG+G+++    E+A KA+ +MN   +  ++IFV
Sbjct: 205 ESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFV 263

Query: 68  DYVRPNRHYNTDASLVRQ 85
              R  +     A L R+
Sbjct: 264 G--RAQKKVERQAELKRK 279


>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
           PE=1 SV=3
          Length = 682

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L + FS FG +    + MD+   RSKGYG++    EE AQ A+  +N MLL+ +
Sbjct: 156 SIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 214

Query: 64  VIFVDY 69
            +FV +
Sbjct: 215 QVFVGH 220



 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   E L + FS++G VT   ++M+  +  S+G+G++  S  EEA  A+ +MN  ++  +
Sbjct: 352 SVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRK 410

Query: 64  VIFV 67
            ++V
Sbjct: 411 PLYV 414



 Score = 31.2 bits (69), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 6   TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
           T + L   F ++G ++ A ++ D   N S+ +G++   + E A  A+  MN + L   V+
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 309

Query: 66  FV 67
           +V
Sbjct: 310 YV 311



 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S  +  L D F+Q   V    +  D+  +RS GY Y+  +  E+A +A+  +N   +  R
Sbjct: 69  SVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLNYAPIRDR 127

Query: 64  VIFV 67
            I +
Sbjct: 128 PIRI 131


>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
          Length = 439

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           + F+ T++ML   F  FG++    ++ D    RSKGYG++T S  E A++AL  +N   L
Sbjct: 270 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 329

Query: 61  DVRVIFVDYV 70
             R + V +V
Sbjct: 330 AGRPMRVGHV 339



 Score = 29.3 bits (64), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
           L D FS  G+V    II D    RSKG  Y+     +    A+    + LL V +I
Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPII 237


>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
           PE=2 SV=1
          Length = 660

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L + FS FG +    + MD+   RSKGYG++    EE AQ A+  +N ML++ +
Sbjct: 146 SIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204

Query: 64  VIFVDY 69
            +FV +
Sbjct: 205 QVFVGH 210



 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   E L + FS++G VT + ++++  +  S+G+G++  S  EEA +AL +MN  ++  +
Sbjct: 342 SVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRK 400

Query: 64  VIFV 67
            +++
Sbjct: 401 PLYI 404



 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L   F +FG ++ A ++ D   N S+ +G++     E A  A+  MN + L   V++V
Sbjct: 245 LRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYV 301


>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
          PE=2 SV=1
          Length = 172

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          +SF T ++ L   FS++GQ+++  ++ D    RS+G+G++T    ++A+ A++ MN   +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 73 DGRQIRVD 80


>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
          SV=1
          Length = 172

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          +SF T ++ L   FS++GQ+++  ++ D    RS+G+G++T    ++A+ A++ MN   +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 73 DGRQIRVD 80


>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
          PE=2 SV=1
          Length = 172

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          +SF T ++ L   FS++GQ+++  ++ D    RS+G+G++T    ++A+ A++ MN   +
Sbjct: 13 LSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 73 DGRQIRVD 80


>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
           GN=epabp-b PE=2 SV=1
          Length = 629

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    ++ D  +  S+GYG++   T+E A +A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSAFGDILSCKVVCD--EYGSRGYGFVHFETQEAANRAIQTMNGMLLNDR 166

Query: 64  VIFVDYVRPNR 74
            +FV + +  R
Sbjct: 167 KVFVGHFKSRR 177



 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L + FS FG      ++MD    RS+G+G++     EEAQKA+ +MN   ++ R+++V
Sbjct: 207 LKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYV 263



 Score = 41.6 bits (96), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L   FS +G +T   ++ + G   SKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 310 LRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYV 365


>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
           PE=1 SV=1
          Length = 629

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    + +D    +SKGYG++  + EE AQKA+  +N MLL+ +
Sbjct: 134 SIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDK 192

Query: 64  VIFV 67
            ++V
Sbjct: 193 QVYV 196



 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           + F+ T   L DAF Q G V    +  D+   RS GYGY+  +  ++A +A+ ++N + L
Sbjct: 43  LDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPL 102

Query: 61  DVRVIFVDY 69
             + I V Y
Sbjct: 103 YGKPIRVMY 111



 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           STT + L +AF ++G++T A ++ D G+ +SKG+G++     ++A +A+  +N    D +
Sbjct: 225 STTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 283

Query: 64  VIFV 67
             +V
Sbjct: 284 EWYV 287



 Score = 39.3 bits (90), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S + E L + FS FG VT + ++ D     SKG G++  +T EEA +A+  ++  +++ +
Sbjct: 328 SISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESK 386

Query: 64  VIFV 67
            ++V
Sbjct: 387 PLYV 390


>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
          SV=1
          Length = 172

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          +SF T ++ L   FS++GQ+++  ++ D    RS+G+G++T    ++A+ A++ MN   +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 73 DGRQIRVD 80


>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
          SV=1
          Length = 172

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          +SF T ++ L   FS++GQ+++  ++ D    RS+G+G++T    ++A+ A++ MN   +
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 72

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 73 DGRQIRVD 80


>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
           PE=2 SV=1
          Length = 614

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L D FS FG +    +  D  ++ S+G+G++   T E AQ+A+  MN MLL+ R
Sbjct: 109 SIDNKALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDR 166

Query: 64  VIFVDYVRPNR 74
            +FV + +  R
Sbjct: 167 KVFVGHFKSRR 177



 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L   FS +G +T A ++ + G   SKG+G++  S+ EEA KA+ +MN  ++  + ++V
Sbjct: 310 LRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 365



 Score = 41.2 bits (95), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L D FSQFG++    ++ D     S+ +G++     EEAQKA+V MN   +  R+++ 
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYA 263


>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=pab1 PE=1 SV=2
          Length = 653

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           E L   FS FG +T A I+ D  + +SKG+G++  +T EEA KA+ +MN+ +L  + ++V
Sbjct: 378 ERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436



 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
           L D FS FG++    + +D   N +KGYG++   + E A  A+  +N MLL+ + ++V +
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242



 Score = 39.3 bits (90), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 6   TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56
           T++  +D F QFG++T  +++ D   ++ +G+G++  +  E AQKA+ ++N
Sbjct: 273 TEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELN 322



 Score = 37.0 bits (84), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S T+ ML + F+  G V    +  D    RS GY Y+     E+ +KAL ++N  L+  R
Sbjct: 90  SVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR 149


>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
          GN=blt801 PE=1 SV=1
          Length = 161

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 45/74 (60%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          + ++T  + L +AFS++G V  + II D    RS+G+G++T +++E  ++A+  MN   L
Sbjct: 13 LRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDL 72

Query: 61 DVRVIFVDYVRPNR 74
          D R I V+  +  R
Sbjct: 73 DGRNITVNEAQSRR 86


>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
          mays GN=RAB15 PE=1 SV=1
          Length = 157

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 43/68 (63%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++++T+ E L +AF+ +G++  + +I D    RS+G+G++T S+E     A+ +MN   L
Sbjct: 15 LAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKEL 74

Query: 61 DVRVIFVD 68
          D R I V+
Sbjct: 75 DGRNITVN 82


>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
           PE=1 SV=1
          Length = 276

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69
           L   FS+ G+V  A ++ D    RS+G+G++T S+E E  +A+ +++   LD R I V+ 
Sbjct: 207 LEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNA 266

Query: 70  V--RPNRH 75
              RP R+
Sbjct: 267 AEERPRRN 274



 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKAL-----VDMNKMLLDV 62
           E LA  F Q G V  A +I +   +RS+G+G++T ST EEA KA+      D+N  LL V
Sbjct: 111 EGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTV 170

Query: 63  RVIFVDYVRPNRHYNT 78
                   RP R   T
Sbjct: 171 NKAAPRGSRPERAPRT 186


>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
           GN=pabpc1A PE=1 SV=1
          Length = 565

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 10  LADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L D FS FG +    ++ D G N SKG+G++   T+E A KA+  +N M+++ + +FV
Sbjct: 114 LYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFV 170



 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 38/64 (59%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   + L + FSQFG +T A ++ D     SKG+G++  +  +EA +A+ +MN  ++  +
Sbjct: 294 SIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTK 353

Query: 64  VIFV 67
            ++V
Sbjct: 354 PLYV 357



 Score = 33.9 bits (76), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 8   EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           + L +   Q+G++T  TI+ D  K +SKG+G+    + E A+  + + N  +   + I+ 
Sbjct: 202 DQLKELLQQYGEITNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYA 260


>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
           GN=RBP29 PE=1 SV=2
          Length = 342

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           +S+      L + F++ G+V +A +I D    RSKG+G++T S+ +E QKA+  +N   L
Sbjct: 264 LSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADL 323

Query: 61  DVRVIFVD--YVRPNR 74
           D R I V     RP R
Sbjct: 324 DGRQIRVSEAEARPPR 339



 Score = 33.1 bits (74), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           +SF+     LA  F   G V    +I D    RS+G+G++T ST  E + A    N    
Sbjct: 106 LSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEF 165

Query: 61  DVRVIFVDYVRP 72
           + R + V+   P
Sbjct: 166 EGRPLRVNAGPP 177


>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
          Length = 326

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 42/77 (54%)

Query: 6   TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVI 65
           T++ L   FS  G+V  A +I D     S GYG++   T ++A++A+  +N + L  + I
Sbjct: 32  TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91

Query: 66  FVDYVRPNRHYNTDASL 82
            V Y RP+     DA+L
Sbjct: 92  KVSYARPSSEVIKDANL 108



 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 33/61 (54%)

Query: 9   MLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVD 68
           +L   F  FG VT   +I D   N+ KG+G++T +  EEA  A+  +N   L  +++ V 
Sbjct: 259 ILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVS 318

Query: 69  Y 69
           +
Sbjct: 319 F 319



 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 6   TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN--KMLLDVR 63
           T++ + D FS+FG++  + +++D     S+G  ++      EA++A+   N  K      
Sbjct: 118 TQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 177

Query: 64  VIFVDYVRPNRHYNTDASLVRQPAQSP 90
            I V +   N + N + +L+ Q   SP
Sbjct: 178 PITVKFA-ANPNQNKNVALLSQLYHSP 203


>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
           rerio GN=snrnp35 PE=2 SV=1
          Length = 208

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 5   TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV 64
           TT+E L D FS+FG + +  ++ D+    SK Y ++    E   ++A  D NK++LD   
Sbjct: 61  TTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDANKLILDQYE 120

Query: 65  IFVD 68
           + VD
Sbjct: 121 LLVD 124


>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
          PE=1 SV=2
          Length = 166

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 44/68 (64%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++F T ++ L  AF+++G++++  ++ D    RS+G+G++T    ++A+ A++ MN   +
Sbjct: 12 LNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSV 71

Query: 61 DVRVIFVD 68
          D R I VD
Sbjct: 72 DGRQIRVD 79


>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
          Length = 169

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%)

Query: 1  VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
          ++++T +  L  AFSQFG++  + II D    RS+G+G++T   E+  + A+  MN   L
Sbjct: 15 LAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDL 74

Query: 61 DVRVIFVD 68
          D R I V+
Sbjct: 75 DGRSITVN 82


>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
           / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
           PE=3 SV=2
          Length = 631

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S   E L + F  FG +T A +++D    +SKG+G++  S+ EEA KA+ +MN+ ++  +
Sbjct: 352 SIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGK 410

Query: 64  VIFV 67
            ++V
Sbjct: 411 PLYV 414



 Score = 35.8 bits (81), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 4   STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR 63
           S  + +L + FS  GQV+   +  D    +S GY Y+      +  +A+ ++N  L+D R
Sbjct: 68  SVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGR 127

Query: 64  VIFVDYVR--PNRHYNTDASL 82
              + + +  P+   N D ++
Sbjct: 128 PCRIMWSQRDPSLRRNGDGNI 148



 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 10  LADAFSQFGQVTKATIIMD-IGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFV 67
           L D FS FG++    +  D +G+  SK +G++   T E A+ A+ ++N MLL+ R +FV
Sbjct: 162 LHDTFSAFGRILSCKVATDELGQ--SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 218



 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 14  FSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73
           F  FG VT   +  D  + +S+G+G++     E A  A+ +MN   +D + ++V   +  
Sbjct: 259 FKPFGPVTSVHLETDQ-EGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKK 317

Query: 74  RH 75
           R 
Sbjct: 318 RE 319


>sp|Q9D384|U1SBP_MOUSE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus
           musculus GN=Snrnp35 PE=2 SV=1
          Length = 244

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 38/69 (55%)

Query: 1   VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL 60
           ++  T +E L + FS++G + +  ++ D+    SKGY ++    E    KA  D + +++
Sbjct: 58  LNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRDADGLVI 117

Query: 61  DVRVIFVDY 69
           D   IFVDY
Sbjct: 118 DQHEIFVDY 126


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,619,137
Number of Sequences: 539616
Number of extensions: 983850
Number of successful extensions: 3716
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 2724
Number of HSP's gapped (non-prelim): 1015
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)