Query 042899
Match_columns 93
No_of_seqs 105 out of 1337
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 18:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.3E-23 1.1E-27 108.2 10.3 72 1-72 27-98 (99)
2 2dgo_A Cytotoxic granule-assoc 99.9 4.1E-21 1.4E-25 102.4 12.9 78 1-78 23-100 (115)
3 3s8s_A Histone-lysine N-methyl 99.9 1.3E-21 4.6E-26 103.9 10.5 74 1-74 14-87 (110)
4 2dnz_A Probable RNA-binding pr 99.9 1.8E-21 6.2E-26 100.6 9.5 78 1-78 13-90 (95)
5 2cpz_A CUG triplet repeat RNA- 99.9 3.7E-21 1.3E-25 102.7 10.9 77 1-77 33-109 (115)
6 2cq0_A Eukaryotic translation 99.9 4.1E-21 1.4E-25 100.7 10.3 77 1-77 23-99 (103)
7 2cqb_A Peptidyl-prolyl CIS-tra 99.9 2.1E-21 7.3E-26 101.6 9.0 78 1-78 20-97 (102)
8 3md1_A Nuclear and cytoplasmic 99.9 7.8E-21 2.7E-25 96.0 10.8 74 1-74 9-82 (83)
9 3bs9_A Nucleolysin TIA-1 isofo 99.9 6.6E-21 2.3E-25 97.1 10.5 73 1-73 14-86 (87)
10 2lxi_A RNA-binding protein 10; 99.9 3.3E-22 1.1E-26 103.0 5.6 76 1-76 9-86 (91)
11 1whw_A Hypothetical protein ri 99.9 4.4E-21 1.5E-25 99.9 9.9 77 1-77 16-92 (99)
12 2do0_A HnRNP M, heterogeneous 99.9 2.6E-20 9E-25 99.1 12.8 78 1-79 23-100 (114)
13 1x5t_A Splicing factor 3B subu 99.9 3E-21 1E-25 100.0 8.7 78 1-78 13-91 (96)
14 2dgs_A DAZ-associated protein 99.9 4.8E-21 1.6E-25 99.8 9.4 77 1-78 18-94 (99)
15 1u6f_A Tcubp1, RNA-binding pro 99.9 1.2E-20 4.2E-25 103.5 11.1 78 1-78 50-127 (139)
16 2cpf_A RNA binding motif prote 99.9 8.8E-21 3E-25 98.6 9.9 77 1-77 13-92 (98)
17 3p5t_L Cleavage and polyadenyl 99.9 6.4E-22 2.2E-26 101.6 5.5 75 1-75 9-85 (90)
18 2lkz_A RNA-binding protein 5; 99.9 1.3E-21 4.6E-26 101.4 6.7 72 1-72 17-94 (95)
19 2do4_A Squamous cell carcinoma 99.9 1.4E-20 4.9E-25 98.1 10.5 75 1-76 25-99 (100)
20 1x5s_A Cold-inducible RNA-bind 99.9 3.4E-21 1.2E-25 100.8 8.0 77 1-77 20-96 (102)
21 2dng_A Eukaryotic translation 99.9 2E-20 6.7E-25 98.1 10.9 76 1-78 23-98 (103)
22 2fy1_A RNA-binding motif prote 99.9 1.2E-20 4.2E-25 100.9 9.7 75 1-76 15-89 (116)
23 1wi8_A EIF-4B, eukaryotic tran 99.8 1.5E-20 5.1E-25 98.7 9.6 76 1-78 23-99 (104)
24 1x4h_A RNA-binding protein 28; 99.8 1.6E-20 5.5E-25 99.5 9.7 77 1-77 23-105 (111)
25 2cpe_A RNA-binding protein EWS 99.8 1.1E-20 3.7E-25 100.5 8.9 78 1-78 23-108 (113)
26 2cqd_A RNA-binding region cont 99.8 3.1E-20 1.1E-24 99.2 10.7 75 1-76 25-99 (116)
27 2dnm_A SRP46 splicing factor; 99.8 4.8E-21 1.6E-25 100.4 7.4 77 1-77 21-97 (103)
28 1x5u_A Splicing factor 3B subu 99.8 8.2E-21 2.8E-25 99.8 8.3 77 1-77 23-99 (105)
29 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-20 5.2E-25 95.3 8.9 71 1-71 15-85 (85)
30 2cqc_A Arginine/serine-rich sp 99.8 3.2E-20 1.1E-24 95.9 10.2 72 1-72 23-94 (95)
31 1p27_B RNA-binding protein 8A; 99.8 1.5E-20 5.3E-25 98.9 9.1 74 1-74 31-104 (106)
32 2x1f_A MRNA 3'-END-processing 99.8 2.1E-20 7.3E-25 96.9 9.3 75 1-75 10-84 (96)
33 2dgp_A Bruno-like 4, RNA bindi 99.8 9.1E-21 3.1E-25 99.8 7.9 77 1-77 21-100 (106)
34 2d9p_A Polyadenylate-binding p 99.8 2.6E-20 9E-25 97.6 9.4 76 1-78 23-98 (103)
35 4f25_A Polyadenylate-binding p 99.8 4.1E-20 1.4E-24 98.7 10.3 74 1-76 13-86 (115)
36 2cph_A RNA binding motif prote 99.8 1.8E-20 6.3E-25 98.7 8.8 77 1-77 23-101 (107)
37 1oo0_B CG8781-PA, drosophila Y 99.8 2.6E-20 8.8E-25 98.7 9.4 75 1-75 34-108 (110)
38 2e5h_A Zinc finger CCHC-type a 99.8 3E-20 1E-24 95.9 9.1 71 1-71 24-94 (94)
39 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.9E-20 2.4E-24 102.3 11.2 76 1-76 47-122 (156)
40 1x4b_A Heterogeneous nuclear r 99.8 4E-20 1.4E-24 98.8 9.9 76 1-77 35-110 (116)
41 4a8x_A RNA-binding protein wit 99.8 2.2E-20 7.5E-25 95.3 8.4 75 1-75 12-87 (88)
42 1p1t_A Cleavage stimulation fa 99.8 2.7E-21 9.3E-26 101.5 4.9 77 1-77 16-92 (104)
43 3ucg_A Polyadenylate-binding p 99.8 5.9E-20 2E-24 93.9 9.7 72 1-73 14-85 (89)
44 3n9u_C Cleavage and polyadenyl 99.8 3.4E-20 1.2E-24 103.7 9.5 73 1-73 63-137 (156)
45 2dnh_A Bruno-like 5, RNA bindi 99.8 5.4E-20 1.9E-24 96.6 9.6 76 1-77 23-101 (105)
46 2dh8_A DAZ-associated protein 99.8 3.2E-20 1.1E-24 97.5 8.8 76 1-77 24-99 (105)
47 3ex7_B RNA-binding protein 8A; 99.8 1.5E-20 5E-25 101.7 7.4 77 1-77 30-106 (126)
48 2m2b_A RNA-binding protein 10; 99.8 4.5E-21 1.5E-25 104.5 5.4 78 1-79 31-114 (131)
49 2div_A TRNA selenocysteine ass 99.8 2.9E-20 9.8E-25 96.8 8.3 74 1-74 17-95 (99)
50 2jrs_A RNA-binding protein 39; 99.8 3E-20 1E-24 98.3 8.3 74 1-74 34-107 (108)
51 2jwn_A Embryonic polyadenylate 99.8 9.7E-20 3.3E-24 98.2 10.4 75 1-76 44-118 (124)
52 2la6_A RNA-binding protein FUS 99.8 3.7E-20 1.3E-24 96.4 8.5 71 1-71 21-99 (99)
53 2cq3_A RNA-binding protein 9; 99.8 2E-19 6.9E-24 94.2 11.3 76 1-78 23-98 (103)
54 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.6E-19 5.5E-24 94.6 10.8 75 1-77 23-97 (103)
55 2kxn_B Transformer-2 protein h 99.8 2.1E-20 7.3E-25 101.7 7.6 74 1-74 54-127 (129)
56 3ns6_A Eukaryotic translation 99.8 7.6E-21 2.6E-25 99.4 5.5 70 4-73 23-93 (100)
57 2kn4_A Immunoglobulin G-bindin 99.8 4.4E-20 1.5E-24 103.2 8.8 77 1-77 78-154 (158)
58 3ulh_A THO complex subunit 4; 99.8 1.5E-19 5.3E-24 95.2 10.2 70 1-71 37-106 (107)
59 2cq4_A RNA binding motif prote 99.8 1.1E-20 3.8E-25 100.7 5.4 75 1-76 33-107 (114)
60 2cqg_A TDP-43, TAR DNA-binding 99.8 4.9E-19 1.7E-23 92.7 11.7 75 1-77 23-97 (103)
61 2cpi_A CCR4-NOT transcription 99.8 1E-19 3.5E-24 96.6 9.1 75 1-75 23-103 (111)
62 2ywk_A Putative RNA-binding pr 99.8 1.6E-19 5.4E-24 93.3 9.5 71 1-72 24-94 (95)
63 2dgx_A KIAA0430 protein; RRM d 99.8 1.8E-19 6E-24 93.5 9.5 72 1-75 17-92 (96)
64 1x4a_A Splicing factor, argini 99.8 2.1E-19 7.2E-24 95.0 9.9 75 1-78 30-104 (109)
65 2khc_A Testis-specific RNP-typ 99.8 3.9E-20 1.3E-24 99.0 7.0 71 1-71 48-118 (118)
66 2cqp_A RNA-binding protein 12; 99.8 7.1E-20 2.4E-24 95.1 7.6 73 1-73 23-95 (98)
67 2dhg_A TRNA selenocysteine ass 99.8 8.4E-20 2.9E-24 95.8 8.0 76 1-77 17-94 (104)
68 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.3E-19 7.9E-24 101.1 10.2 77 1-77 80-156 (165)
69 2ek1_A RNA-binding protein 12; 99.8 6.9E-20 2.3E-24 94.7 7.2 72 1-72 23-94 (95)
70 2dgw_A Probable RNA-binding pr 99.8 5E-19 1.7E-23 90.8 10.4 72 1-75 18-89 (91)
71 2rs2_A Musashi-1, RNA-binding 99.8 3.4E-19 1.2E-23 94.4 9.5 75 1-76 33-107 (109)
72 2kt5_A RNA and export factor-b 99.8 5.5E-19 1.9E-23 95.3 10.3 73 1-74 43-115 (124)
73 2fc8_A NCL protein; structure 99.8 6.4E-19 2.2E-23 92.1 10.3 76 1-79 23-98 (102)
74 3s7r_A Heterogeneous nuclear r 99.8 6.7E-19 2.3E-23 89.6 9.6 69 1-70 19-87 (87)
75 2lcw_A RNA-binding protein FUS 99.7 2E-21 6.7E-26 103.9 0.0 81 1-81 15-103 (116)
76 2dgv_A HnRNP M, heterogeneous 99.8 3.6E-19 1.2E-23 91.4 8.5 73 1-75 16-88 (92)
77 1wez_A HnRNP H', FTP-3, hetero 99.8 2E-19 6.9E-24 94.3 7.4 73 1-76 23-95 (102)
78 2mss_A Protein (musashi1); RNA 99.8 6.1E-20 2.1E-24 91.2 4.8 69 1-70 7-75 (75)
79 2dis_A Unnamed protein product 99.8 4.2E-19 1.4E-23 93.8 8.3 77 1-77 16-96 (109)
80 2fc9_A NCL protein; structure 99.8 7.5E-19 2.6E-23 91.7 9.0 73 1-77 23-95 (101)
81 2lea_A Serine/arginine-rich sp 99.8 8E-20 2.7E-24 100.1 5.5 77 1-77 55-131 (135)
82 2wbr_A GW182, gawky, LD47780P; 99.8 4.7E-19 1.6E-23 89.9 7.5 65 1-71 15-79 (89)
83 3q2s_C Cleavage and polyadenyl 99.8 1.7E-19 5.7E-24 106.3 6.6 71 1-71 76-148 (229)
84 2db1_A Heterogeneous nuclear r 99.8 1.3E-19 4.3E-24 97.2 5.5 72 1-74 25-99 (118)
85 2j76_E EIF-4B, EIF4B, eukaryot 99.8 8.5E-20 2.9E-24 95.3 4.7 72 1-74 27-99 (100)
86 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 6.1E-19 2.1E-23 96.7 8.3 70 1-70 71-140 (140)
87 1x5o_A RNA binding motif, sing 99.8 9.7E-19 3.3E-23 93.1 8.6 72 1-73 33-112 (114)
88 2ki2_A SS-DNA binding protein 99.8 4.2E-20 1.4E-24 94.7 3.0 74 1-75 9-82 (90)
89 1x4c_A Splicing factor, argini 99.8 4.6E-18 1.6E-22 89.8 11.0 69 1-76 23-96 (108)
90 1s79_A Lupus LA protein; RRM, 99.8 3.2E-19 1.1E-23 93.7 6.3 70 1-72 19-88 (103)
91 2dnq_A RNA-binding protein 4B; 99.8 1.6E-18 5.6E-23 88.7 8.8 70 1-78 16-85 (90)
92 2dgu_A Heterogeneous nuclear r 99.8 5.1E-18 1.8E-22 88.9 10.8 70 1-78 19-88 (103)
93 1x4g_A Nucleolysin TIAR; struc 99.8 2.2E-18 7.4E-23 91.1 9.4 71 1-77 33-103 (109)
94 2hvz_A Splicing factor, argini 99.8 8.6E-19 2.9E-23 91.5 7.7 71 1-76 8-78 (101)
95 1x4e_A RNA binding motif, sing 99.8 6.4E-20 2.2E-24 93.1 2.9 70 1-70 13-82 (85)
96 2dgt_A RNA-binding protein 30; 99.8 5.6E-18 1.9E-22 87.1 10.3 70 1-78 18-87 (92)
97 2err_A Ataxin-2-binding protei 99.8 1.1E-18 3.7E-23 92.4 7.7 71 1-73 37-107 (109)
98 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-18 3.8E-23 91.6 7.5 72 1-78 24-97 (105)
99 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.7E-19 9.4E-24 89.1 4.5 69 1-70 8-76 (77)
100 1wg5_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 91.3 7.4 73 1-75 23-96 (104)
101 3md3_A Nuclear and cytoplasmic 99.8 6.1E-18 2.1E-22 94.4 10.4 72 1-72 95-166 (166)
102 2cpx_A Hypothetical protein FL 99.8 1.9E-19 6.4E-24 96.0 3.9 78 1-78 33-110 (115)
103 2hgl_A HNRPF protein, heteroge 99.8 7.6E-19 2.6E-23 96.3 6.4 71 1-73 52-125 (136)
104 2cpy_A RNA-binding protein 12; 99.8 7.9E-19 2.7E-23 93.6 6.3 72 1-74 23-95 (114)
105 2jvr_A Nucleolar protein 3; RN 99.8 1.8E-18 6.3E-23 91.8 7.3 70 1-74 36-106 (111)
106 3pgw_S U1-70K; protein-RNA com 99.8 5.5E-18 1.9E-22 107.6 10.7 75 1-75 110-184 (437)
107 1why_A Hypothetical protein ri 99.8 2.9E-18 9.8E-23 88.9 7.7 69 1-75 25-95 (97)
108 2qfj_A FBP-interacting repress 99.8 6.5E-18 2.2E-22 98.0 10.0 74 1-74 133-206 (216)
109 2dnn_A RNA-binding protein 12; 99.8 4.4E-18 1.5E-22 90.1 8.4 70 1-73 24-93 (109)
110 2cq1_A PTB-like protein L; RRM 99.8 1.2E-17 4.2E-22 87.3 10.0 71 1-77 23-95 (101)
111 1l3k_A Heterogeneous nuclear r 99.8 7.3E-18 2.5E-22 96.5 9.8 78 1-79 112-189 (196)
112 2j8a_A Histone-lysine N-methyl 99.8 4.2E-18 1.4E-22 91.8 7.8 70 2-71 15-94 (136)
113 2dnp_A RNA-binding protein 14; 99.8 1.1E-17 3.7E-22 85.7 9.0 68 1-76 17-84 (90)
114 2jvo_A Nucleolar protein 3; nu 99.8 7.6E-18 2.6E-22 89.0 8.5 68 1-76 39-106 (108)
115 2ad9_A Polypyrimidine tract-bi 99.8 6.5E-18 2.2E-22 90.6 8.3 72 1-78 39-112 (119)
116 1fxl_A Paraneoplastic encephal 99.8 1.9E-17 6.3E-22 92.5 10.5 75 1-75 10-84 (167)
117 2cqh_A IGF-II mRNA-binding pro 99.8 4.9E-18 1.7E-22 87.4 7.4 71 1-78 16-88 (93)
118 1wf1_A RNA-binding protein RAL 99.8 9.3E-18 3.2E-22 88.8 8.6 68 1-76 35-103 (110)
119 2yh0_A Splicing factor U2AF 65 99.8 1.2E-17 4E-22 95.7 9.5 75 1-75 122-196 (198)
120 4f02_A Polyadenylate-binding p 99.8 2.2E-17 7.6E-22 96.1 10.7 73 1-73 23-95 (213)
121 1iqt_A AUF1, heterogeneous nuc 99.8 5.2E-19 1.8E-23 87.7 3.3 69 1-70 7-75 (75)
122 2cpj_A Non-POU domain-containi 99.8 6.7E-18 2.3E-22 87.8 7.7 70 1-76 23-92 (99)
123 1fj7_A Nucleolin RBD1, protein 99.7 1.7E-19 5.7E-24 94.2 1.4 74 1-76 25-98 (101)
124 1wel_A RNA-binding protein 12; 99.7 5.8E-19 2E-23 95.3 3.5 73 1-74 33-105 (124)
125 1b7f_A Protein (SXL-lethal pro 99.7 2E-17 6.9E-22 92.6 9.8 76 1-76 11-86 (168)
126 3r27_A HnRNP L, heterogeneous 99.7 1.4E-17 4.8E-22 86.7 8.4 68 1-74 29-98 (100)
127 1fjc_A Nucleolin RBD2, protein 99.7 6.6E-18 2.3E-22 87.3 7.2 71 1-76 24-94 (96)
128 2nlw_A Eukaryotic translation 99.7 4.7E-18 1.6E-22 89.4 6.6 71 1-73 23-100 (105)
129 1x4d_A Matrin 3; structural ge 99.7 6.2E-18 2.1E-22 88.5 6.9 69 1-75 23-94 (102)
130 2g4b_A Splicing factor U2AF 65 99.7 1.6E-17 5.6E-22 93.3 9.1 70 1-70 102-171 (172)
131 2hgn_A Heterogeneous nuclear r 99.7 6.5E-19 2.2E-23 96.8 2.8 73 1-76 54-126 (139)
132 2f3j_A RNA and export factor b 99.7 6.3E-18 2.2E-22 96.2 7.0 73 1-74 96-168 (177)
133 1x5p_A Negative elongation fac 99.7 7.4E-17 2.5E-21 83.6 10.4 69 4-78 24-92 (97)
134 2cpd_A Apobec-1 stimulating pr 99.7 6.2E-17 2.1E-21 84.1 10.1 68 1-76 23-92 (99)
135 2xs2_A Deleted in azoospermia- 99.7 7.9E-18 2.7E-22 87.9 6.7 72 1-75 17-88 (102)
136 2la4_A Nuclear and cytoplasmic 99.7 9.5E-18 3.3E-22 87.5 6.9 66 1-72 35-100 (101)
137 3zzy_A Polypyrimidine tract-bi 99.7 6.8E-17 2.3E-21 87.7 10.4 69 1-74 36-107 (130)
138 2pe8_A Splicing factor 45; RRM 99.7 5E-17 1.7E-21 85.5 9.6 67 6-72 26-93 (105)
139 1wex_A Hypothetical protein (r 99.7 1.3E-17 4.6E-22 87.6 7.4 70 1-76 23-94 (104)
140 1nu4_A U1A RNA binding domain; 99.7 1.1E-17 3.6E-22 86.7 6.9 72 1-75 16-91 (97)
141 2lmi_A GRSF-1, G-rich sequence 99.7 1.3E-19 4.5E-24 95.6 -0.4 72 1-74 19-93 (107)
142 2e5g_A U6 snRNA-specific termi 99.7 3.1E-17 1.1E-21 84.6 8.5 69 1-75 16-84 (94)
143 2xnq_A Nuclear polyadenylated 99.7 5.4E-17 1.9E-21 84.2 9.5 65 1-73 30-95 (97)
144 4f02_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 95.3 9.5 73 1-75 111-183 (213)
145 2cjk_A Nuclear polyadenylated 99.7 7.3E-18 2.5E-22 94.4 6.2 72 1-73 95-166 (167)
146 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 91.3 9.4 70 1-74 54-125 (164)
147 2a3j_A U1 small nuclear ribonu 99.7 1.2E-17 4E-22 90.6 6.7 72 1-75 37-112 (127)
148 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-17 5.4E-22 88.5 7.1 72 1-75 16-87 (115)
149 1jmt_A Splicing factor U2AF 35 99.7 9.7E-18 3.3E-22 88.1 5.9 62 8-70 41-103 (104)
150 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-17 5E-22 86.3 6.5 69 1-74 27-95 (97)
151 2kvi_A Nuclear polyadenylated 99.7 1.8E-17 6.3E-22 85.8 6.8 69 1-77 18-87 (96)
152 2krb_A Eukaryotic translation 99.7 2.6E-18 8.8E-23 86.5 3.4 65 1-67 9-80 (81)
153 2ytc_A PRE-mRNA-splicing facto 99.7 5E-17 1.7E-21 82.3 8.1 65 1-71 20-85 (85)
154 3egn_A RNA-binding protein 40; 99.7 6E-18 2E-22 93.2 4.9 73 1-76 53-133 (143)
155 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.4E-22 90.4 5.3 71 1-73 31-105 (123)
156 2cq2_A Hypothetical protein LO 99.7 3.4E-17 1.2E-21 87.1 7.1 68 1-74 35-107 (114)
157 2i2y_A Fusion protein consists 99.7 1.7E-17 5.7E-22 92.1 6.1 69 1-74 81-149 (150)
158 1whx_A Hypothetical protein ri 99.7 4.4E-17 1.5E-21 86.5 7.3 69 1-75 18-86 (111)
159 1l3k_A Heterogeneous nuclear r 99.7 1.9E-16 6.4E-21 90.6 10.2 73 1-74 21-93 (196)
160 1b7f_A Protein (SXL-lethal pro 99.7 9E-17 3.1E-21 89.9 8.6 70 1-70 97-168 (168)
161 3beg_B Splicing factor, argini 99.7 5.1E-17 1.7E-21 86.7 7.1 68 1-75 24-96 (115)
162 2e44_A Insulin-like growth fac 99.7 5.5E-17 1.9E-21 83.8 6.7 69 1-73 23-92 (96)
163 3md3_A Nuclear and cytoplasmic 99.7 3.4E-16 1.2E-20 87.2 10.2 74 1-75 8-81 (166)
164 1wg1_A KIAA1579 protein, homol 99.7 3.3E-16 1.1E-20 79.8 9.3 67 1-74 13-79 (88)
165 2e5i_A Heterogeneous nuclear r 99.7 2.8E-16 9.5E-21 84.8 9.0 68 1-74 33-103 (124)
166 1fxl_A Paraneoplastic encephal 99.7 1.8E-16 6.2E-21 88.5 8.6 70 1-70 96-167 (167)
167 2qfj_A FBP-interacting repress 99.7 9.7E-17 3.3E-21 93.0 7.6 73 1-73 36-108 (216)
168 1x4f_A Matrin 3; structural ge 99.7 6.3E-17 2.1E-21 85.9 5.7 70 1-76 33-105 (112)
169 3v4m_A Splicing factor U2AF 65 99.7 3.1E-16 1.1E-20 82.5 8.1 67 6-72 28-96 (105)
170 2d9o_A DNAJ (HSP40) homolog, s 99.7 4.1E-16 1.4E-20 81.3 8.2 67 3-76 27-93 (100)
171 2hgm_A HNRPF protein, heteroge 99.7 2.9E-17 1E-21 88.9 3.9 69 1-72 50-120 (126)
172 2ghp_A U4/U6 snRNA-associated 99.7 3.5E-16 1.2E-20 94.4 8.4 72 1-73 218-291 (292)
173 3nmr_A Cugbp ELAV-like family 99.7 5.5E-16 1.9E-20 87.1 8.6 69 1-70 103-174 (175)
174 3smz_A Protein raver-1, ribonu 99.7 1.8E-15 6.2E-20 91.0 11.3 75 1-75 103-177 (284)
175 3smz_A Protein raver-1, ribonu 99.7 1E-15 3.5E-20 92.1 10.0 74 1-75 192-266 (284)
176 3tyt_A Heterogeneous nuclear r 99.7 5.9E-16 2E-20 89.8 8.5 68 1-73 12-80 (205)
177 2bz2_A Negative elongation fac 99.7 4E-16 1.4E-20 83.9 7.1 67 4-76 48-114 (121)
178 3ue2_A Poly(U)-binding-splicin 99.7 1E-15 3.4E-20 82.0 8.6 66 7-72 39-108 (118)
179 1fje_B Nucleolin RBD12, protei 99.7 7.4E-16 2.5E-20 86.9 8.4 68 1-73 107-174 (175)
180 3d2w_A TAR DNA-binding protein 99.7 9E-16 3.1E-20 78.5 7.7 66 1-75 19-86 (89)
181 1wf0_A TDP-43, TAR DNA-binding 99.6 2.6E-16 8.9E-21 80.2 5.4 71 1-78 13-83 (88)
182 2dit_A HIV TAT specific factor 99.6 3.6E-15 1.2E-19 79.1 9.8 67 6-76 39-105 (112)
183 2voo_A Lupus LA protein; RNA-b 99.6 2.7E-15 9.4E-20 86.3 9.6 71 1-73 117-187 (193)
184 3nmr_A Cugbp ELAV-like family 99.6 1.7E-15 5.9E-20 85.1 8.6 75 1-75 11-90 (175)
185 3pgw_A U1-A; protein-RNA compl 99.6 3.3E-15 1.1E-19 89.8 9.4 71 1-74 17-91 (282)
186 2cjk_A Nuclear polyadenylated 99.6 1.2E-15 4.1E-20 85.3 6.7 71 1-73 11-81 (167)
187 2dnl_A Cytoplasmic polyadenyla 99.6 1.7E-15 5.7E-20 80.6 6.7 66 1-69 16-84 (114)
188 2hzc_A Splicing factor U2AF 65 99.6 3.3E-15 1.1E-19 75.7 7.2 62 1-69 14-86 (87)
189 2diu_A KIAA0430 protein; struc 99.6 2.2E-15 7.6E-20 77.2 5.8 66 1-76 17-87 (96)
190 3pgw_A U1-A; protein-RNA compl 99.6 7.5E-15 2.6E-19 88.2 9.0 66 1-71 215-281 (282)
191 3s6e_A RNA-binding protein 39; 99.6 3.8E-15 1.3E-19 79.3 5.7 62 7-72 31-92 (114)
192 2adc_A Polypyrimidine tract-bi 99.6 5.3E-15 1.8E-19 86.9 6.4 68 1-73 42-110 (229)
193 3sde_A Paraspeckle component 1 99.6 2.4E-14 8.3E-19 85.5 9.1 74 1-75 104-181 (261)
194 3u1l_A PRE-mRNA-splicing facto 99.6 9.5E-15 3.2E-19 86.4 7.1 64 6-75 156-231 (240)
195 2ghp_A U4/U6 snRNA-associated 99.6 1.2E-14 4.2E-19 87.7 7.7 75 1-76 125-200 (292)
196 1qm9_A Polypyrimidine tract-bi 99.5 9.1E-15 3.1E-19 83.9 5.4 68 1-73 11-79 (198)
197 3tyt_A Heterogeneous nuclear r 99.5 2.5E-14 8.4E-19 83.0 6.5 68 1-70 131-204 (205)
198 1qm9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.4E-19 82.9 5.5 68 1-73 128-197 (198)
199 1fje_B Nucleolin RBD12, protei 99.5 4.2E-15 1.5E-19 83.7 2.9 73 1-75 21-93 (175)
200 2adc_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 82.9 7.0 68 1-73 159-228 (229)
201 3sde_A Paraspeckle component 1 99.5 1.1E-13 3.8E-18 82.6 8.6 66 1-72 30-95 (261)
202 2yh0_A Splicing factor U2AF 65 99.5 9.3E-13 3.2E-17 75.3 9.7 67 1-74 12-89 (198)
203 2g4b_A Splicing factor U2AF 65 99.4 8.4E-13 2.9E-17 74.0 8.3 68 1-75 12-90 (172)
204 3tht_A Alkylated DNA repair pr 99.4 6E-13 2E-17 82.3 7.0 65 1-71 28-97 (345)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 4E-12 1.4E-16 64.6 7.1 57 8-73 30-86 (91)
206 3dxb_A Thioredoxin N-terminall 99.3 5E-12 1.7E-16 73.9 7.7 66 6-71 142-211 (222)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 7.9E-11 2.7E-15 60.1 5.8 55 8-71 39-93 (95)
208 1owx_A Lupus LA protein, SS-B, 99.1 7.6E-10 2.6E-14 59.2 6.4 64 1-70 26-93 (121)
209 2l9w_A U4/U6 snRNA-associated- 98.7 3.3E-07 1.1E-11 47.9 8.0 63 1-69 29-96 (117)
210 1uw4_A UPF3X; nonsense mediate 97.9 0.00029 9.9E-09 35.8 8.8 62 1-62 9-72 (91)
211 1wey_A Calcipressin 1; structu 97.7 0.001 3.5E-08 34.5 8.7 61 8-74 25-85 (104)
212 1whv_A Poly(A)-specific ribonu 97.5 0.00042 1.4E-08 35.5 5.7 47 1-55 23-69 (100)
213 1wwh_A Nucleoporin 35, nucleop 97.5 0.001 3.5E-08 35.3 7.4 57 7-70 37-94 (119)
214 3ctr_A Poly(A)-specific ribonu 97.3 0.00049 1.7E-08 35.4 4.2 48 1-56 13-60 (101)
215 2l08_A Regulator of nonsense t 97.1 0.0016 5.6E-08 33.3 5.2 62 1-62 17-80 (97)
216 2kn4_A Immunoglobulin G-bindin 97.1 0.0011 3.7E-08 36.4 4.7 35 22-58 2-36 (158)
217 3p3d_A Nucleoporin 53; structu 97.0 0.00099 3.4E-08 35.9 4.0 65 6-71 19-97 (132)
218 2dhx_A Poly (ADP-ribose) polym 97.0 0.0097 3.3E-07 30.8 9.2 65 1-74 16-85 (104)
219 2i2y_A Fusion protein consists 96.6 0.0013 4.6E-08 35.8 2.3 41 31-72 9-50 (150)
220 3pq1_A Poly(A) RNA polymerase; 96.2 0.004 1.4E-07 40.3 3.0 47 2-53 61-107 (464)
221 3d45_A Poly(A)-specific ribonu 92.3 0.66 2.3E-05 30.4 6.6 48 2-57 448-495 (507)
222 2g0c_A ATP-dependent RNA helic 77.1 3.2 0.00011 19.5 3.0 57 6-71 14-75 (76)
223 2cu1_A Mitogen-activated prote 53.9 21 0.00072 18.3 5.1 61 3-72 26-87 (103)
224 1ik9_C DNA ligase IV; DNA END 45.1 17 0.00059 14.8 1.8 15 3-17 20-34 (37)
225 3mfb_A Uncharacterized protein 44.0 40 0.0014 18.7 4.4 36 5-40 3-41 (157)
226 3h7h_B Transcription elongatio 36.2 30 0.001 17.7 2.3 25 34-58 50-74 (106)
227 1fme_A FSD-EY peptide; beta-BE 35.4 22 0.00075 13.1 1.2 12 6-17 14-25 (28)
228 3lpe_A Putative transcription 35.1 43 0.0015 16.4 2.8 25 34-58 49-73 (92)
229 2npt_B Mitogen-activated prote 30.9 57 0.002 16.5 4.9 47 4-58 39-86 (100)
230 4e8u_A Putative uncharacterize 28.9 82 0.0028 17.7 4.5 44 6-52 34-80 (172)
231 2i9x_A Putative septation prot 28.8 59 0.002 16.1 4.1 26 19-44 5-30 (87)
232 2jrh_A Mitogen-activated prote 28.7 61 0.0021 16.2 4.1 60 4-72 23-83 (94)
233 2c60_A Human mitogen-activated 28.6 66 0.0023 16.5 3.9 47 4-58 50-97 (111)
234 2exu_A Transcription initiatio 26.2 74 0.0025 18.3 3.0 26 33-58 147-172 (200)
235 2lfv_A Protein DAMX; cell divi 31.5 15 0.0005 18.9 0.0 53 6-59 35-88 (106)
236 2ia9_A Putative septation prot 25.4 76 0.0026 16.1 4.1 26 19-44 5-30 (100)
237 3ts2_A Protein LIN-28 homolog 24.2 13 0.00045 20.2 -0.4 9 35-43 21-29 (148)
238 2i9z_A Putative septation prot 23.9 84 0.0029 16.1 4.1 25 20-44 6-30 (105)
239 2nn4_A Hypothetical protein YQ 22.3 37 0.0013 16.2 1.1 18 6-23 4-21 (72)
240 3p8b_B Transcription antitermi 21.5 1E+02 0.0035 16.5 2.9 26 34-59 42-67 (152)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=108.23 Aligned_cols=72 Identities=32% Similarity=0.538 Sum_probs=70.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..++++.++.+++++|||||+|.+.++|.+|+..|||..+.|+.|.|.+|+|
T Consensus 27 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999986
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.88 E-value=4.1e-21 Score=102.44 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=73.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++......
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 23 LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK 100 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCCSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCCCc
Confidence 688999999999999999999999999988999999999999999999999999999999999999999987765543
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=103.85 Aligned_cols=74 Identities=11% Similarity=0.214 Sum_probs=70.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
|++++++++|+++|++||.|.++.|+.++.+++++|||||+|.+.++|.+|+..|||..+.|+.|.|.++....
T Consensus 14 L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 14 LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999986544
No 4
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=100.65 Aligned_cols=78 Identities=32% Similarity=0.495 Sum_probs=73.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||.++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++......
T Consensus 13 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 90 (95)
T 2dnz_A 13 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGS 90 (95)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999987766543
No 5
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=3.7e-21 Score=102.67 Aligned_cols=77 Identities=23% Similarity=0.362 Sum_probs=72.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..++++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+.
T Consensus 33 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 33 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 109 (115)
T ss_dssp CCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999998765544
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.1e-21 Score=100.68 Aligned_cols=77 Identities=21% Similarity=0.429 Sum_probs=72.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 23 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 23 LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNSG 99 (103)
T ss_dssp CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCSC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999998765544
No 7
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.1e-21 Score=101.59 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=73.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....+
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 97 (102)
T 2cqb_A 20 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKES 97 (102)
T ss_dssp CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999988765544
No 8
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=7.8e-21 Score=96.03 Aligned_cols=74 Identities=22% Similarity=0.442 Sum_probs=70.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++..
T Consensus 9 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 9 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999998753
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=6.6e-21 Score=97.07 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=68.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+++++
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 14 LSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999999764
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-22 Score=102.98 Aligned_cols=76 Identities=12% Similarity=0.273 Sum_probs=69.3
Q ss_pred CCcccCHHHHHHHhcccC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFG-QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN-KMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~-~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.|| .|.++++++++.++.++|||||+|.+.++|.+|+..++ +..++|+.|.|.++++....
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 799999999999999999 79999999999999999999999999999999998774 56799999999999876543
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=4.4e-21 Score=99.92 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=72.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 16 LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence 68899999999999999999999999998889999999999999999999999999999999999999998876554
No 12
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-20 Score=99.14 Aligned_cols=78 Identities=26% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNTD 79 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~ 79 (93)
||+++++++|+++|..||.|..+.++.++ +++++|||||+|.+.++|.+|+..|++..+.|+.|.|.+++....+...
T Consensus 23 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~ 100 (114)
T 2do0_A 23 LDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDF 100 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCCCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCCCCC
Confidence 68899999999999999999999999987 5899999999999999999999999999999999999999766555443
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3e-21 Score=100.02 Aligned_cols=78 Identities=26% Similarity=0.396 Sum_probs=72.8
Q ss_pred CCcccCHHHHHHHhcccCCceEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKA-TIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~-~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+ +++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+..
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 13 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGS 91 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCCCC
Confidence 68899999999999999999999 9999988999999999999999999999999999999999999999987765543
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=99.81 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=71.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+. +++..+.|+.|.|.++++......
T Consensus 18 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~~~ 94 (99)
T 2dgs_A 18 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSS 94 (99)
T ss_dssp CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcccCC
Confidence 68899999999999999999999999998899999999999999999999998 999999999999999987665543
No 15
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=103.52 Aligned_cols=78 Identities=18% Similarity=0.355 Sum_probs=73.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+.+
T Consensus 50 Lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 127 (139)
T 1u6f_A 50 IPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPG 127 (139)
T ss_dssp CSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCCC
Confidence 688999999999999999999999999998999999999999999999999999999999999999999988766544
No 16
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=8.8e-21 Score=98.58 Aligned_cols=77 Identities=29% Similarity=0.357 Sum_probs=70.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIG---KNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~---~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.+..++. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 13 LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPA 92 (98)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCCC
Confidence 688999999999999999999999998876 56899999999999999999999999999999999999998765544
No 17
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=6.4e-22 Score=101.63 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=66.9
Q ss_pred CCcccCHHHHHHHhcccC--CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFG--QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.|| .|..++++.++.+++++|||||+|.+.++|.+|+..|||..++|+.|.|.++.+...
T Consensus 9 L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 9 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 788999999999999999 999999999999999999999999999999999999999999999999999876543
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=101.43 Aligned_cols=72 Identities=19% Similarity=0.383 Sum_probs=67.3
Q ss_pred CCcccCHHHHHHHhcccCC--ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----EecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQ--VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM----LLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~--i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~----~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|++||. +.+|++++|+.+++++|||||+|.+.++|.+|+..||+. .++|+.|.|++|+.
T Consensus 17 L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 17 IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 7899999999999999995 678999999999999999999999999999999999986 59999999999875
No 19
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=98.14 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=70.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.+..++ +++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 25 LPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPSS 99 (100)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSCC
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 68899999999999999999999999997 8999999999999999999999999999999999999999876543
No 20
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.4e-21 Score=100.81 Aligned_cols=77 Identities=30% Similarity=0.535 Sum_probs=72.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 20 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 96 (102)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 68899999999999999999999999998889999999999999999999999999999999999999998766544
No 21
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=2e-20 Score=98.11 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=70.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.|| |..+.++.++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++++.....+
T Consensus 23 Lp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~~ 98 (103)
T 2dng_A 23 LPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQDKS 98 (103)
T ss_dssp CCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCCCS
T ss_pred CCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCCCC
Confidence 788999999999999997 999999999999999999999999999999999 8999999999999999987665543
No 22
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=100.93 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=70.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||.++++++|+++|+.||.|..+.+..++ +++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 15 LNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp CTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 68899999999999999999999999987 8999999999999999999999999999999999999999766544
No 23
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=98.74 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=70.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGK-NRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.|| |..+.++.++.+ ++++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++++.....+
T Consensus 23 lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~~~ 99 (104)
T 1wi8_A 23 LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDKDS 99 (104)
T ss_dssp CCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCCCC
T ss_pred CCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCCCC
Confidence 688999999999999999 999999999887 899999999999999999999 8999999999999999988766554
No 24
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=99.51 Aligned_cols=77 Identities=27% Similarity=0.419 Sum_probs=72.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN------KMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~------~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..++ +..+.|+.|.|.++++..
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 23 LSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 68899999999999999999999999999999999999999999999999999999 999999999999998765
Q ss_pred CCC
Q 042899 75 HYN 77 (93)
Q Consensus 75 ~~~ 77 (93)
...
T Consensus 103 ~~~ 105 (111)
T 1x4h_A 103 EAA 105 (111)
T ss_dssp CCC
T ss_pred cCC
Confidence 544
No 25
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=100.52 Aligned_cols=78 Identities=23% Similarity=0.211 Sum_probs=72.3
Q ss_pred CCcccCHHHHHHHhcccCCce--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVT--------KATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|. .++++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 23 LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp CCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCC
Confidence 688999999999999999998 699999988999999999999999999999999999999999999999988
Q ss_pred CCCCCC
Q 042899 73 NRHYNT 78 (93)
Q Consensus 73 ~~~~~~ 78 (93)
......
T Consensus 103 ~~~~~~ 108 (113)
T 2cpe_A 103 KPPMNS 108 (113)
T ss_dssp CCCSTT
T ss_pred CCCCCC
Confidence 665543
No 26
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-20 Score=99.19 Aligned_cols=75 Identities=28% Similarity=0.458 Sum_probs=69.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..++++.++.+++++|||||+|.+.++|.+|+..+++ .+.|+.|.|.++++....
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 25 LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAKP 99 (116)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCCC
T ss_pred CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCCc
Confidence 688999999999999999999999999998999999999999999999999999998 899999999999765443
No 27
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=100.45 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=72.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 21 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 21 LTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDL 97 (103)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCCC
Confidence 68899999999999999999999999999889999999999999999999999999999999999999998765443
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.2e-21 Score=99.81 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 23 LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKNL 99 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999998765543
No 29
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=1.5e-20 Score=95.34 Aligned_cols=71 Identities=25% Similarity=0.419 Sum_probs=68.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|++++
T Consensus 15 l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 15 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999874
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-20 Score=95.88 Aligned_cols=72 Identities=29% Similarity=0.431 Sum_probs=69.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 23 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 688999999999999999999999999998999999999999999999999999999999999999999865
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=98.91 Aligned_cols=74 Identities=27% Similarity=0.326 Sum_probs=70.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++..
T Consensus 31 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 31 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999997754
No 32
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=2.1e-20 Score=96.87 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=70.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++...
T Consensus 10 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999977643
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=9.1e-21 Score=99.78 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe---cCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL---DVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~---~~~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+ .++.|.|.++++...+.
T Consensus 21 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 21 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRGG 100 (106)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccccC
Confidence 688999999999999999999999999998999999999999999999999999999987 88999999998765544
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=97.60 Aligned_cols=76 Identities=32% Similarity=0.562 Sum_probs=70.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.+..+ ++..++||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 98 (103)
T 2d9p_A 23 LDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQS 98 (103)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCCC
Confidence 6889999999999999999999999987 789999999999999999999999999999999999999988765543
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=4.1e-20 Score=98.73 Aligned_cols=74 Identities=35% Similarity=0.594 Sum_probs=67.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..++|+.++ +.++|||||+|.+.++|.+|+..|++..++|+.|.|.++++...+
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~ 86 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 86 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC-
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccc
Confidence 78999999999999999999999999885 457899999999999999999999999999999999998776544
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=98.71 Aligned_cols=77 Identities=18% Similarity=0.430 Sum_probs=71.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMD-IGKNRSKGYGYMTSSTEEEAQKALVDM-NKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~-~~~~~~~g~~fv~f~~~~~~~~a~~~l-~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.+ +.++.++|||||+|.+.++|.+|+..| ++..+.|+.|.|.++++.....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 23 IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 101 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCCC
T ss_pred CCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCCC
Confidence 6889999999999999999999999988 778999999999999999999999999 9999999999999998876554
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=2.6e-20 Score=98.66 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=71.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++...
T Consensus 34 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 34 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999987654
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=95.89 Aligned_cols=71 Identities=31% Similarity=0.388 Sum_probs=68.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.+++
T Consensus 24 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 24 LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 68899999999999999999999999998889999999999999999999999999999999999999875
No 39
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=6.9e-20 Score=102.30 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..|.|+.++.++.+++||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 47 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 47 LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999765543
No 40
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4e-20 Score=98.75 Aligned_cols=76 Identities=28% Similarity=0.454 Sum_probs=71.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++++.....
T Consensus 35 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~~ 110 (116)
T 1x4b_A 35 LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREESG 110 (116)
T ss_dssp CTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccCC
Confidence 688999999999999999999999999998999999999999999999999997 9999999999999998876554
No 41
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=95.25 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=69.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNR-SKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~-~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|..+.++.++.++. .+|||||+|.+.++|.+|+..|+|..++|+.|.|.++.+...
T Consensus 12 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 12 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWP 87 (88)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCC
Confidence 688999999999999999999999999877666 899999999999999999999999999999999999977543
No 42
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-21 Score=101.46 Aligned_cols=77 Identities=26% Similarity=0.457 Sum_probs=72.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++.....
T Consensus 16 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 92 (104)
T 1p1t_A 16 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 92 (104)
T ss_dssp CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHH
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchh
Confidence 68899999999999999999999999998899999999999999999999999999999999999999998766543
No 43
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.84 E-value=5.9e-20 Score=93.86 Aligned_cols=72 Identities=31% Similarity=0.433 Sum_probs=68.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.+++.+|+ .+++..+.|+.|.|.++++.
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 14 VDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp CCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 6889999999999999999999999999889999999999999999999999 89999999999999998764
No 44
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=3.4e-20 Score=103.73 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=69.8
Q ss_pred CCcccCHHHHHHHhcccC--CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFG--QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
|++++++++|+++|+.|| .|..++++.|+.+++++|||||+|.+.++|.+|+..|+|..++|+.|.|.++.+.
T Consensus 63 Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 63 FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 789999999999999999 9999999999999999999999999999999999999999999999999998654
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=5.4e-20 Score=96.65 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecC---eEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV---RVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~---~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.+..++ +++++|||||+|.+.++|.+|+..|++..+.+ +.|.|.++++...+.
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 23 LNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKESG 101 (105)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcccC
Confidence 68899999999999999999999999987 78999999999999999999999999999888 999999998876554
No 46
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=97.55 Aligned_cols=76 Identities=29% Similarity=0.407 Sum_probs=71.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++++.....
T Consensus 24 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCCT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCCC
Confidence 688999999999999999999999999998999999999999999999999998 9999999999999998765543
No 47
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.5e-20 Score=101.73 Aligned_cols=77 Identities=26% Similarity=0.299 Sum_probs=72.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 30 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 30 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPK 106 (126)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999997766544
No 48
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-21 Score=104.51 Aligned_cols=78 Identities=17% Similarity=0.327 Sum_probs=71.5
Q ss_pred CCcccCHHHHHHHhcccCCceE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----EecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTK--ATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM----LLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~----~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|.. ++|+.++.+++++|||||+|.+. ++.+|+..|++. .+.|+.|.|.++++..
T Consensus 31 L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 31 LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 7889999999999999999966 99999999999999999999999 999999999999 9999999999998865
Q ss_pred CCCCC
Q 042899 75 HYNTD 79 (93)
Q Consensus 75 ~~~~~ 79 (93)
.....
T Consensus 110 ~~~~~ 114 (131)
T 2m2b_A 110 RDMAS 114 (131)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 54433
No 49
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=96.80 Aligned_cols=74 Identities=18% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCcccCHHHHHHHhcccCCce-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeE----EEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVT-KATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV----IFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~-~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~----l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|. .++++.++.+++++|||||+|.+.++|.+|+..|++..+.|+. |+|.++++..
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 17 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred CCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 688999999999999999999 9999999989999999999999999999999999999999998 9999987654
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=98.33 Aligned_cols=74 Identities=36% Similarity=0.558 Sum_probs=70.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+++++.
T Consensus 34 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 34 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 68899999999999999999999999999899999999999999999999999999999999999999987753
No 51
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=9.7e-20 Score=98.24 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=69.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.+++.+|+ .|++..+.|+.|.|.++++....
T Consensus 44 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 118 (124)
T 2jwn_A 44 VDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMPG 118 (124)
T ss_dssp ECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCCC
Confidence 5789999999999999999999999999889999999999999999999999 79999999999999998765443
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=96.44 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=67.9
Q ss_pred CCcccCHHHHHHHhcccCCceE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTK--------ATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|.. +.++.++.+++++|||||+|.+.+++.+|+..|+|..+.|+.|.|++++
T Consensus 21 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 21 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp CCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 6889999999999999999999 9999999999999999999999999999999999999999999999874
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-19 Score=94.21 Aligned_cols=76 Identities=25% Similarity=0.417 Sum_probs=69.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.++. .+++||||+|.+.++|.+|+..|++..+.|+.|.|.++++......
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNS 98 (103)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCCC
Confidence 688999999999999999999999998754 3889999999999999999999999999999999999988765543
No 54
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-19 Score=94.56 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++. ..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 23 LSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 97 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCCC
T ss_pred CCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcccc
Confidence 688999999999999999999999998854 368999999999999999999999999999999999998866544
No 55
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2.1e-20 Score=101.68 Aligned_cols=74 Identities=31% Similarity=0.496 Sum_probs=70.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|..+.++.++.+++.+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++..
T Consensus 54 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 54 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 68899999999999999999999999999899999999999999999999999999999999999999987754
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=7.6e-21 Score=99.37 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=67.1
Q ss_pred ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecC-eEEEEEEecCC
Q 042899 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV-RVIFVDYVRPN 73 (93)
Q Consensus 4 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~-~~l~v~~~~~~ 73 (93)
++++++|+++|+.||.|..+.|+.++.+++++|||||+|.+.++|.+|+..|||..+.| +.|.|.++.+.
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 89999999999999999999999999999999999999999999999999999999999 99999998754
No 57
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=4.4e-20 Score=103.16 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=72.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++...+.
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 154 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 154 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999998764443
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=1.5e-19 Score=95.18 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=67.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 37 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 37 LDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 68899999999999999999999999998 89999999999999999999999999999999999999875
No 59
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-20 Score=100.69 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.++.++.+++.+|||||+|.+.++|.+|+ .|++..+.|+.|.|.++++...+
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 33 LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNR 107 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCccC
Confidence 6889999999999999999999999999988999999999999999999999 89999999999999999765443
No 60
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.9e-19 Score=92.72 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=69.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+. ++..+.|+.|.|.++++.....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 23 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQD 97 (103)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCCC
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcCC
Confidence 68899999999999999999999999999899999999999999999999998 5789999999999998765543
No 61
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=96.60 Aligned_cols=75 Identities=19% Similarity=0.249 Sum_probs=68.3
Q ss_pred CCcccCHHHHH---HHhcccCCceEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLA---DAFSQFGQVTKATIIMDIGKN---RSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~---~~f~~~G~i~~~~i~~~~~~~---~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+ ++|+.||.|..+.++.++.++ +++|||||+|.+.++|.+|+..||+..+.|+.|.|.++++..
T Consensus 23 Lp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 23 LSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 68899999999 999999999999999887643 556999999999999999999999999999999999998765
Q ss_pred C
Q 042899 75 H 75 (93)
Q Consensus 75 ~ 75 (93)
.
T Consensus 103 ~ 103 (111)
T 2cpi_A 103 C 103 (111)
T ss_dssp C
T ss_pred c
Confidence 4
No 62
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=93.30 Aligned_cols=71 Identities=27% Similarity=0.308 Sum_probs=67.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++. ++++|||||+|.+.++|.+|+..|++..+.|+.|.|.+++.
T Consensus 24 lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 24 LEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 688999999999999999999999999875 88999999999999999999999999999999999998764
No 63
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=93.48 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=66.5
Q ss_pred CCcccCHHHHH----HHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLA----DAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+ ++|+.||.|..+.++.++.+ ++||||+|.+.++|.+|+..|||..+.|+.|.|.++++...
T Consensus 17 L~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 17 IDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 68899999999 99999999999999988755 78999999999999999999999999999999999977543
No 64
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=95.01 Aligned_cols=75 Identities=12% Similarity=0.228 Sum_probs=67.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.+..+ +.+++||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....+
T Consensus 30 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 104 (109)
T 1x4a_A 30 LPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGS 104 (109)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCCCC
Confidence 6889999999999999999999988554 55789999999999999999999999999999999999987655443
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=3.9e-20 Score=99.05 Aligned_cols=71 Identities=25% Similarity=0.383 Sum_probs=67.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
||+++++++|+++|+.||.|..++++.++.+++++|||||+|.+.+++.+|+..|++..++|+.|.|++++
T Consensus 48 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 48 LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp SCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999874
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=95.13 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=68.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.+++.+
T Consensus 23 Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 6889999999999999999988888888888999999999999999999999999999999999999998653
No 67
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=95.78 Aligned_cols=76 Identities=20% Similarity=0.364 Sum_probs=70.8
Q ss_pred CCcccCHHHHHHHhcc-cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE-ecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQ-FGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML-LDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~-~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+. ||.|..+.++.++ +++++|||||+|.+.++|.+|+..|++.. +.|+.|.|.++++...+.
T Consensus 17 Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 17 LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 94 (104)
T ss_dssp CCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSCC
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcCC
Confidence 6889999999999999 9999999999998 89999999999999999999999999999 999999999997765543
No 68
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=2.3e-19 Score=101.06 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=70.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+.+|+.||.|..+.|+.++.++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++.....
T Consensus 80 Lp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 80 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 68899999999999999999999999999899999999999999999999999999999999999999998765543
No 69
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=6.9e-20 Score=94.67 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=67.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 688999999999999999999888888888899999999999999999999999999999999999998754
No 70
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5e-19 Score=90.81 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.| .|..+.++.+ .+++++|||||+|.+.+++.+|+. +++..+.|+.|.|.++++...
T Consensus 18 Lp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 18 APFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp CCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCCC
T ss_pred CCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCCC
Confidence 78999999999999999 9999999998 789999999999999999999999 999999999999999977643
No 71
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=3.4e-19 Score=94.36 Aligned_cols=75 Identities=31% Similarity=0.467 Sum_probs=69.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.+++.+|+..+ +..+.|+.|.|.++.+...+
T Consensus 33 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 33 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCCC
T ss_pred CCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCCC
Confidence 6889999999999999999999999999989999999999999999999999975 58999999999999876443
No 72
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=5.5e-19 Score=95.33 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=68.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||.++++++|+++|+.||.|..+.+..++ +++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.+..
T Consensus 43 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 43 LDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 68899999999999999999999999998 89999999999999999999999999999999999999997643
No 73
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.4e-19 Score=92.08 Aligned_cols=76 Identities=28% Similarity=0.430 Sum_probs=68.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNTD 79 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~ 79 (93)
||+++++++|+++|+.| ..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+++.
T Consensus 23 Lp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 98 (102)
T 2fc8_A 23 LSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGSG 98 (102)
T ss_dssp CCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSSSCS
T ss_pred CCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCCCCC
Confidence 68899999999999977 36778888888999999999999999999999999999999999999999887665443
No 74
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=6.7e-19 Score=89.62 Aligned_cols=69 Identities=35% Similarity=0.513 Sum_probs=65.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.+++.+|+. +++..+.|+.|.|++|
T Consensus 19 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 19 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 68899999999999999999999999999999999999999999999999997 5888999999999875
No 75
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=2e-21 Score=103.92 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=73.8
Q ss_pred CCcccCHHHHHHHhcccCCceE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTK--------ATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||.++++++|+++|+.||.|.. +.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 15 LGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 6789999999999999999998 88999988899999999999999999999999999999999999999988
Q ss_pred CCCCCCCCC
Q 042899 73 NRHYNTDAS 81 (93)
Q Consensus 73 ~~~~~~~~~ 81 (93)
...+.++..
T Consensus 95 ~~~~~~ggg 103 (116)
T 2lcw_A 95 RADFNRGGG 103 (116)
Confidence 776654433
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.6e-19 Score=91.44 Aligned_cols=73 Identities=36% Similarity=0.400 Sum_probs=67.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.+..+ +++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...
T Consensus 16 lp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 6889999999999999999999998874 688999999999999999999999999999999999999977644
No 77
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=94.27 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||. ..++|+.++ +++++|||||+|.+.++|.+|+. +++..+.++.|.|..+.+....
T Consensus 23 Lp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~~~ 95 (102)
T 1wez_A 23 LPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGTS 95 (102)
T ss_dssp CCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCCCCC
Confidence 7899999999999999994 599999997 89999999999999999999995 7999999999999988765543
No 78
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=6.1e-20 Score=91.19 Aligned_cols=69 Identities=26% Similarity=0.443 Sum_probs=65.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.+++.+|+. +++..+.|+.|.|.+|
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 78999999999999999999999999998889999999999999999999998 8999999999999864
No 79
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=93.79 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=70.1
Q ss_pred CCcccCHHHHHHHhcccCC-ceEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQ-VTKATII-MDIGKNRSKGYGYMTSSTEEEAQKALVDMN--KMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~-i~~~~i~-~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~--~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|..||. |..+.++ .++.++.++|||||+|.+.++|.+|+..|+ +..+.|+.|.|.++++....
T Consensus 16 Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 16 IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 6889999999999999998 9999988 788888999999999999999999999996 58999999999999876654
Q ss_pred C
Q 042899 77 N 77 (93)
Q Consensus 77 ~ 77 (93)
.
T Consensus 96 ~ 96 (109)
T 2dis_A 96 D 96 (109)
T ss_dssp T
T ss_pred C
Confidence 3
No 80
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=91.72 Aligned_cols=73 Identities=27% Similarity=0.432 Sum_probs=65.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.| +++.+ .+++.+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 95 (101)
T 2fc9_A 23 LSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN 95 (101)
T ss_dssp CCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCCC
T ss_pred CCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCCC
Confidence 68899999999999999976 45555 578899999999999999999999999999999999999998765443
No 81
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=8e-20 Score=100.07 Aligned_cols=77 Identities=23% Similarity=0.407 Sum_probs=71.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 68899999999999999999999999998889999999999999999999999999999999999999998765443
No 82
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=4.7e-19 Score=89.94 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=60.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
|++.+++++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 15 L~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 15 LTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 678999999999999999999999865 57999999999999999999999999999999999883
No 83
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=1.7e-19 Score=106.30 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=68.4
Q ss_pred CCcccCHHHHHHHhcccC--CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFG--QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
|++++++++|+++|+.|| .|..|+|+.++.+++++|||||+|.+.++|.+||..|++..|.|+.|.|.+++
T Consensus 76 L~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 76 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred CCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 788999999999999999 99999999999999999999999999999999999999999999999999874
No 84
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-19 Score=97.23 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=67.1
Q ss_pred CCcccCHHHHHHHhcccCC---ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQ---VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||. |..++++.++. ++++|||||+|.+.+++.+|+. +++..++|+.|.|.++.+..
T Consensus 25 Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 25 LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence 7899999999999999999 89999999976 9999999999999999999999 99999999999999986543
No 85
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=8.5e-20 Score=95.30 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=67.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDI-GKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~-~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.|| |..+.++.++ .+++++|||||+|.+.+++.+|+ .|++..+.|+.|.|.++++..
T Consensus 27 Lp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 27 LPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 688999999999999999 9999999987 68999999999999999999999 899999999999999987653
No 86
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=6.1e-19 Score=96.65 Aligned_cols=70 Identities=26% Similarity=0.412 Sum_probs=66.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.+|
T Consensus 71 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 71 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999875
No 87
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=93.08 Aligned_cols=72 Identities=19% Similarity=0.429 Sum_probs=67.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe--------cCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL--------DVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~--------~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..|+|..+ .+++|.|.++++
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 33 LPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 68899999999999999999999999998 899999999999999999999999999998 578899999875
Q ss_pred C
Q 042899 73 N 73 (93)
Q Consensus 73 ~ 73 (93)
.
T Consensus 112 ~ 112 (114)
T 1x5o_A 112 S 112 (114)
T ss_dssp S
T ss_pred C
Confidence 4
No 88
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=4.2e-20 Score=94.68 Aligned_cols=74 Identities=27% Similarity=0.498 Sum_probs=66.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.+ +.+|+..|++..+.|+.|.|+++.+...
T Consensus 9 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 9 LVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp ECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 5789999999999999999999999999989999999999999999 9999999999999999999999876543
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-18 Score=89.78 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=64.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecC-----eEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV-----RVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~-----~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|..||.|..+.++.+ |||||+|.+.++|.+|+..||+..+.| +.|.|.++++...
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 7899999999999999999999999876 799999999999999999999999999 9999999987654
Q ss_pred C
Q 042899 76 Y 76 (93)
Q Consensus 76 ~ 76 (93)
.
T Consensus 96 ~ 96 (108)
T 1x4c_A 96 S 96 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=93.69 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=65.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.++.++. +.++|||||+|.+.++|.+|+. +++..+.|+.|.|..+..
T Consensus 19 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 19 FPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 789999999999999999999999999987 9999999999999999999999 899999999999998644
No 91
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=88.75 Aligned_cols=70 Identities=21% Similarity=0.381 Sum_probs=63.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||.++++++|+++|+.||.|..+.+. ++||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....+
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 85 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKASS 85 (90)
T ss_dssp CCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCCCS
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCCCC
Confidence 68899999999999999999999887 46999999999999999999999999999999999987665543
No 92
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=5.1e-18 Score=88.87 Aligned_cols=70 Identities=26% Similarity=0.439 Sum_probs=63.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.+++ +||||+|.+.++|.+|+..|++..+.|+.|.|.++++......
T Consensus 19 l~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 88 (103)
T 2dgu_A 19 LANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRK 88 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccch
Confidence 688999999999999999999998763 4999999999999999999999999999999999987766543
No 93
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=91.12 Aligned_cols=71 Identities=24% Similarity=0.451 Sum_probs=65.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 33 l~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 103 (109)
T 1x4g_A 33 IASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 103 (109)
T ss_dssp CSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSSC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCCC
Confidence 6889999999999999999999998865 5899999999999999999999999999999999998765543
No 94
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=8.6e-19 Score=91.49 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.+..+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 8 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 6889999999999999999999998876 6789999999999999999999999999999999999876644
No 95
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-20 Score=93.08 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=65.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|+|..+.|+.|++.++
T Consensus 13 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 13 LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 6889999999999999999999999999889999999999999999999999999999999988766543
No 96
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-18 Score=87.05 Aligned_cols=70 Identities=17% Similarity=0.337 Sum_probs=63.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.+.+ +||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....+
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAS 87 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCCCC
Confidence 688999999999999999999998864 3999999999999999999999999999999999987655443
No 97
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=92.37 Aligned_cols=71 Identities=25% Similarity=0.452 Sum_probs=66.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.||.|..+.+..++ +.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++++.
T Consensus 37 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 37 IPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 68899999999999999999999998875 458899999999999999999999999999999999998765
No 98
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=91.63 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=64.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNK--MLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~--~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+..+++ ..+.|+.|.|.++++......
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTD 97 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCCCT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCCcc
Confidence 7899999999999999999999998865 58999999999999999998864 789999999999987655543
No 99
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-19 Score=89.14 Aligned_cols=69 Identities=30% Similarity=0.463 Sum_probs=65.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|+|||+|.+.+++.+|+..++ ..+.|+.|.|+++
T Consensus 8 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 68899999999999999999999999998889999999999999999999999988 9999999999876
No 100
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=91.30 Aligned_cols=73 Identities=26% Similarity=0.294 Sum_probs=66.7
Q ss_pred CCcccCHHHHHHHhcccCCceE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTK-ATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~-~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|..||.|.. +.|+.+ .+++++|||||+|.+.+++.+|+.. ++..++|+.|.|..+.+..-
T Consensus 23 Lp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 23 LPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp CCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred CCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 7899999999999999999987 888888 6899999999999999999999997 99999999999998866543
No 101
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=6.1e-18 Score=94.40 Aligned_cols=72 Identities=22% Similarity=0.466 Sum_probs=68.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..++|+.|.|.++++
T Consensus 95 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 95 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999863
No 102
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-19 Score=95.95 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=65.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+.+
T Consensus 33 Lp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~ 110 (115)
T 2cpx_A 33 LSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRSS 110 (115)
T ss_dssp CCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCCC
T ss_pred CCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCCC
Confidence 688999999999999999984332222222688899999999999999999999999999999999999988765543
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=7.6e-19 Score=96.25 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=66.6
Q ss_pred CCcccCHHHHHHHhcccCC---ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQ---VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||. |..++++.++. ++++|||||+|.+.++|.+|+. +++..++|+.|.|..+.+.
T Consensus 52 Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 52 LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 7899999999999999999 88999999987 9999999999999999999999 9999999999999988543
No 104
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.9e-19 Score=93.57 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=67.3
Q ss_pred CCcccCHHHHHHHhcccCCc-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQV-TKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.| ..++|+.++ +++++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.+..
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 23 IPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp CCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred cCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 78999999999999999999 889999998 899999999999999999999986 9999999999999986654
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=1.8e-18 Score=91.81 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=62.1
Q ss_pred CCcccCHHHHHHHhcccC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFG-QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.|| .|..+.+.. ..++|||||+|.+.++|.+|+..|||..+.|+.|.|.+++.+.
T Consensus 36 Lp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 36 LPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp SSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 789999999999999999 899887753 3478999999999999999999999999999999999986543
No 106
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=5.5e-18 Score=107.59 Aligned_cols=75 Identities=20% Similarity=0.415 Sum_probs=71.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
|++++++++|..+|+.||.|..|.|+.++.+++++|||||+|.+.++|.+||..|||..|.|+.|.|.++++...
T Consensus 110 L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 110 VNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 788999999999999999999999999988999999999999999999999999999999999999999976543
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=88.93 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=63.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEec--CeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD--VRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~--~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.+..+ ++||||+|.+.++|.+|+..|++..+. |+.|.|.+++++..
T Consensus 25 lp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 25 LGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 6889999999999999999999988653 579999999999999999999999999 99999999987654
No 108
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=6.5e-18 Score=97.95 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=70.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||.++++++|+++|+.||.|..+.+..++.+++++|||||+|.+.++|.+|+..|++..++|+.|.|.++++..
T Consensus 133 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 133 VHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp CCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred CCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 68899999999999999999999999998899999999999999999999999999999999999999997753
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=90.12 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=64.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.| .|..+.|+.++. ++++|||||+|.+.+++.+|+ .+++..++|+.|.|..+.+.
T Consensus 24 Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 24 MPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 78999999999999999 899999999875 999999999999999999999 58999999999999887543
No 110
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-17 Score=87.32 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CcEecCeEEEEEEecCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN--KMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~--~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+++++++|+++|+.||.|..+.++.+ +|||||+|.+.++|.+|+..|+ +..+.|+.|.|.++++.....
T Consensus 23 Lp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 23 LPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 95 (101)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCcC
Confidence 7889999999999999999999988754 6899999999999999999774 678999999999998765544
No 111
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=7.3e-18 Score=96.48 Aligned_cols=78 Identities=17% Similarity=0.331 Sum_probs=67.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNTD 79 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~~ 79 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||.|.+.++|.+|+.. ++..+.|+.|.|.++.+.......
T Consensus 112 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 112 IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp CTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--------
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhccc
Confidence 688999999999999999999999999988999999999999999999999986 899999999999999887665443
No 112
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.2e-18 Score=91.82 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=62.9
Q ss_pred CcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCcEecCeEEEEEEec
Q 042899 2 SFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSST----EEE----AQKALV--DMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~----~~~----~~~a~~--~l~~~~~~~~~l~v~~~~ 71 (93)
++.+++.+|+.+|+.||.|.++.++.|+.||.++|||||.|.+ .++ |.+|+. .++|..++|+.|+|.+.+
T Consensus 15 ~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 15 TTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp CCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 8899999999999999999999999999999999999999995 333 788888 789999999999999753
No 113
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=85.69 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=62.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.+.+ +||||+|.+.++|.+|+..|++..+.|+.|.|.++++...+
T Consensus 17 lp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 17 VSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 688999999999999999999998863 39999999999999999999999999999999999876443
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=7.6e-18 Score=89.03 Aligned_cols=68 Identities=18% Similarity=0.354 Sum_probs=62.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++...+
T Consensus 39 Lp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 39 FPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp SCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 68899999999999999999999887 579999999999999999999999999999999999876543
No 115
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.5e-18 Score=90.57 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=64.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNK--MLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~--~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|.++.++.+ +|||||+|.+.++|.+|+..+++ ..+.|+.|.|.++++......
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTD 112 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCcc
Confidence 7899999999999999999999998865 58999999999999999998874 579999999999987665543
No 116
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=1.9e-17 Score=92.51 Aligned_cols=75 Identities=25% Similarity=0.480 Sum_probs=70.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.+..++.+++++|+|||+|.+.++|.+|+..|++..+.|+.|.|.++.+...
T Consensus 10 lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 84 (167)
T 1fxl_A 10 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA 84 (167)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Confidence 688999999999999999999999999988999999999999999999999999999999999999999876543
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.9e-18 Score=87.41 Aligned_cols=71 Identities=17% Similarity=0.296 Sum_probs=61.7
Q ss_pred CCcccCHHHHHHHhcccCC-ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-cEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQ-VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNK-MLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~-i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~-~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||. +..+.+. .+|||||+|.+.++|.+|+..|++ ..+.|+.|.|.++++...+.+
T Consensus 16 Lp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~~~ 88 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLRSS 88 (93)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccccCC
Confidence 6889999999999999999 5555542 358999999999999999999999 999999999999988655543
No 118
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=9.3e-18 Score=88.80 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=61.7
Q ss_pred CCcc-cCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFS-TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||++ +++++|+++|+.||.|..+.+ .++||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 35 l~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 103 (110)
T 1wf1_A 35 LNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPD 103 (110)
T ss_dssp CCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCSC
T ss_pred CCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCCC
Confidence 6788 999999999999999999988 4589999999999999999999999999999999999754443
No 119
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=1.2e-17 Score=95.74 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=70.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..|+|..++|+.|.|.++++...
T Consensus 122 l~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 122 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 678999999999999999999999999988899999999999999999999999999999999999999987644
No 120
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=2.2e-17 Score=96.10 Aligned_cols=73 Identities=23% Similarity=0.356 Sum_probs=69.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|.+++|++++.+++++|||||+|.+.++|.+|+..+++..+.|+.|.+.++...
T Consensus 23 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 23 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999987544
No 121
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=5.2e-19 Score=87.75 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=64.7
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.+++.+|+.. ++..+.|+.|.|+++
T Consensus 7 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 7 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 689999999999999999999999999988899999999999999999999984 889999999998864
No 122
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=87.82 Aligned_cols=70 Identities=23% Similarity=0.381 Sum_probs=63.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.+..+ ++||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpj_A 23 LPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASL 92 (99)
T ss_dssp CCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSCC
T ss_pred CCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCCC
Confidence 6889999999999999999999988754 579999999999999999999999999999999999876543
No 123
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-19 Score=94.22 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|.. .++.+..+++++|||||+|.+.++|.+|+. |++..+.|+.|.|.++++...+
T Consensus 25 Lp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 25 LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCS
T ss_pred CCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCC
Confidence 6889999999999999999877 566676778899999999999999999998 9999999999999999876544
No 124
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-19 Score=95.31 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=66.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|..||.|..+.++.+..+++++|||||+|.+.++|.+|+. +++..++|+.|.|.++.+..
T Consensus 33 Lp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 105 (124)
T 1wel_A 33 LPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 105 (124)
T ss_dssp CCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHH
Confidence 78999999999999999999886666666789999999999999999999999 99999999999999986543
No 125
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=2e-17 Score=92.58 Aligned_cols=76 Identities=22% Similarity=0.383 Sum_probs=71.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..+++..+.|+.|.|.++.+....
T Consensus 11 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (168)
T 1b7f_A 11 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES 86 (168)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSST
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCccc
Confidence 7899999999999999999999999999889999999999999999999999999999999999999998766543
No 126
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=86.73 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=61.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE--ecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML--LDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~--~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|++||.|.++.+++. +|+|||+|.+.++|.+|+..|++.. +.|++|.|.+++++.
T Consensus 29 Lp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 29 LIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 7889999999999999999999988743 5799999999999999999999864 789999999997653
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=87.34 Aligned_cols=71 Identities=23% Similarity=0.332 Sum_probs=63.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 24 L~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (96)
T 1fjc_A 24 LSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGT 94 (96)
T ss_dssp CCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCCC
T ss_pred CCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 68899999999999999987665 346889999999999999999999999999999999999999776543
No 128
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=4.7e-18 Score=89.38 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=64.1
Q ss_pred CCccc------CHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCe-EEEEEEecCC
Q 042899 1 VSFST------TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR-VIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~------~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~-~l~v~~~~~~ 73 (93)
||+.+ ++++|+++|+.||.|..+.++ +.+++++|||||+|.+.++|.+|+..|+|..+.|+ .|.|.++...
T Consensus 23 Lp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 23 VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp CCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 56677 789999999999999999887 46789999999999999999999999999999998 9999988644
No 129
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=88.53 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=61.5
Q ss_pred CCc-ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--EecCeEEEEEEecCCCC
Q 042899 1 VSF-STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM--LLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~--~~~~~~l~v~~~~~~~~ 75 (93)
||+ ++++++|+++|+.||.|.++.++.+ ++||||+|.+.++|.+|+..|++. .+.|+.|.|.+++....
T Consensus 23 Lp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 23 FQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp CCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 688 9999999999999999999998765 379999999999999999998864 59999999999986543
No 130
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.74 E-value=1.6e-17 Score=93.34 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=67.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..++|+.|.|.+|
T Consensus 102 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 102 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 6889999999999999999999999999889999999999999999999999999999999999999986
No 131
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.74 E-value=6.5e-19 Score=96.84 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.|| +..+.|+.++. ++++|||||+|.+.++|.+|+ .+++..+.++.|.|..+.+....
T Consensus 54 Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 54 LPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp CCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC-
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCCC
Confidence 789999999999999999 77999999976 999999999999999999999 68999999999999988765543
No 132
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=6.3e-18 Score=96.22 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=68.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++....
T Consensus 96 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 96 LDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp CCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 68899999999999999999999999987 89999999999999999999999999999999999999986543
No 133
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-17 Score=83.60 Aligned_cols=69 Identities=20% Similarity=0.357 Sum_probs=61.9
Q ss_pred ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 4 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
++++++|+++|+.||.|..+.+. ..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....+
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPMLDS 92 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCCCS
T ss_pred CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCCCC
Confidence 68999999999999999999884 4568999999999999999999999999999999999987655443
No 134
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-17 Score=84.14 Aligned_cols=68 Identities=28% Similarity=0.457 Sum_probs=61.5
Q ss_pred CCcccCHHHHHHHhccc--CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQF--GQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.| |.|..+.+. ++||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 23 Lp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 23 LMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKD 92 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 68899999999999999 889888764 469999999999999999999999999999999999876543
No 135
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=7.9e-18 Score=87.95 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=66.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|.+|+. ++..+.|+.|.|..+.+...
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 17 IDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC-
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcc
Confidence 68899999999999999999999999998 89999999999999999999998 89999999999999876543
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=9.5e-18 Score=87.49 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=61.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||.++++++|+++|+.||.|..+++. +.+|||||+|.+.++|.+|+..|++..++|+.|.|.++++
T Consensus 35 lp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 35 IPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 68899999999999999999999887 3468999999999999999999999999999999998875
No 137
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=6.8e-17 Score=87.67 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=62.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCcEecC--eEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGY-GYMTSSTEEEAQKALVDMNKMLLDV--RVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-~fv~f~~~~~~~~a~~~l~~~~~~~--~~l~v~~~~~~~ 74 (93)
|++.+++++|+++|++||.|.+|.+... .+|+ |||+|.+.++|.+|+..|||..+.| +.|+|.++++..
T Consensus 36 L~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 36 LFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp CCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 6789999999999999999999988754 2577 9999999999999999999999988 899999998764
No 138
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=5e-17 Score=85.54 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=62.2
Q ss_pred CHHHHHHHhcccCCceEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 6 TKEMLADAFSQFGQVTKATIIMDIGK-NRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~~i~~~~~~-~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
++++|++.|++||.|.++.|+.++.+ ++++|++||.|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 67899999999999999999988654 67899999999999999999999999999999999999865
No 139
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=87.58 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=61.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--EecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM--LLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~--~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|++. .+.|+.|.|.+++.....
T Consensus 23 Lp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 23 LCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 7889999999999999999999988753 589999999999999999988764 589999999999875544
No 140
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=1.1e-17 Score=86.68 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=65.3
Q ss_pred CCcccCHHHHH----HHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLA----DAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||.++++++|+ ++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++...
T Consensus 16 Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 16 LNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp CCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 68899999999 9999999999998763 467789999999999999999999999999999999999987543
No 141
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-19 Score=95.63 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCcccCHHHHHHHhcccCC---ceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQ---VTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~---i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||. |..+.++.++. ++++|||||+|.+.+++.+|+. +++..++|+.|.|..+.+..
T Consensus 19 Lp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 19 LPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp CCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred CCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 7899999999999999988 89999999987 9999999999999999999999 99999999999999886543
No 142
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=84.60 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=60.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+ +.++.+++ ||||+|.+.+++.+|+. |++..+.|+.|.|.++.+...
T Consensus 16 l~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 16 FPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 68899999999999999999987 55655555 99999999999999999 999999999999998765443
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=5.4e-17 Score=84.23 Aligned_cols=65 Identities=15% Similarity=0.341 Sum_probs=60.3
Q ss_pred CCc-ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSF-STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++.
T Consensus 30 Lp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 30 LPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 677 89999999999999999999873 589999999999999999999999999999999998764
No 144
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=3.3e-17 Score=95.35 Aligned_cols=73 Identities=36% Similarity=0.610 Sum_probs=67.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
|++++++++|+++|+.||.|..++|+.+. +.++|||||+|.+.++|.+|+..|||..++|+.|.|.++++...
T Consensus 111 l~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 111 LDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHH
T ss_pred cccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcc
Confidence 68899999999999999999999999885 45789999999999999999999999999999999999976543
No 145
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=7.3e-18 Score=94.39 Aligned_cols=72 Identities=18% Similarity=0.390 Sum_probs=68.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+. +++..+.|+.|.|.+++++
T Consensus 95 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 95 IGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 57899999999999999999999999998889999999999999999999998 8999999999999999875
No 146
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=4.6e-17 Score=91.30 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=62.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecC--eEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV--RVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~--~~l~v~~~~~~~ 74 (93)
|++.+++++|+++|++||.|.+|.+... ..++||||+|.+.++|.+|+..|||..+.+ +.|+|.++++..
T Consensus 54 L~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 54 LFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp CCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 6789999999999999999999988643 246899999999999999999999999965 999999998764
No 147
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=90.62 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=63.7
Q ss_pred CCcccCHHHHH----HHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLA----DAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
|++.+++++|+ ++|+.||.|.+|.+.. +++++|||||+|.+.++|..|+..|||..+.|+.|.|.+++....
T Consensus 37 L~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 37 INPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred CCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 67889998866 6999999999887743 578899999999999999999999999999999999999976543
No 148
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.6e-17 Score=88.46 Aligned_cols=72 Identities=19% Similarity=0.355 Sum_probs=65.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.+ +..+|||||+|.+.++|.+|+..|+|..+.|+.|.|.++++...
T Consensus 16 lp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 16 LPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 6889999999999999999999999865 44589999999999999999999999999999999999976443
No 149
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.73 E-value=9.7e-18 Score=88.13 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=54.9
Q ss_pred HHHHHHh-cccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEe
Q 042899 8 EMLADAF-SQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYV 70 (93)
Q Consensus 8 ~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~ 70 (93)
++|++.| ++||.|.++.|+.+.. ++++||+||.|.+.++|.+|+..|||..+.|+.|.|.++
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3444555 9999999999998764 788999999999999999999999999999999999875
No 150
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=86.28 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=61.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|++..+.|+.|.|.++++..
T Consensus 27 L~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 27 LPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 688999999999999999996 556543 567899999999999999999999999999999999997754
No 151
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.8e-17 Score=85.78 Aligned_cols=69 Identities=14% Similarity=0.292 Sum_probs=61.8
Q ss_pred CCc-ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCC
Q 042899 1 VSF-STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYN 77 (93)
Q Consensus 1 L~~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~ 77 (93)
||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.....
T Consensus 18 lp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 87 (96)
T 2kvi_A 18 LPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARPQ 87 (96)
T ss_dssp STTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC--
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCCC
Confidence 677 89999999999999999999884 5799999999999999999999999999999999998765543
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-18 Score=86.49 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=58.5
Q ss_pred CCccc------CHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCe-EEEE
Q 042899 1 VSFST------TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR-VIFV 67 (93)
Q Consensus 1 L~~~~------~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~-~l~v 67 (93)
||.++ ++++|+++|+.||.|..+.++ +.+++++|||||+|.+.++|.+|+..|||..+.|+ .|.|
T Consensus 9 Lp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 9 VPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 56777 679999999999999999877 45789999999999999999999999999999998 7765
No 153
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5e-17 Score=82.26 Aligned_cols=65 Identities=23% Similarity=0.379 Sum_probs=60.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCcEecCeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDM-NKMLLDVRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l-~~~~~~~~~l~v~~~~ 71 (93)
||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..| ++..+.|+.|.|.+++
T Consensus 20 l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 20 LGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 6889999999999999999999998864 589999999999999999988 9999999999999874
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=93.22 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=63.6
Q ss_pred CCcccCHHHHHHHhcccCCceEE--------EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKA--------TIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~--------~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+.+|+.||.|..+ .+. .+++++|||||+|.+.++|.+|+..|||..+.|+.|.|.++++
T Consensus 53 Lp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 53 LAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp ECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred CCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 67899999999999999988753 332 3588899999999999999999999999999999999999977
Q ss_pred CCCC
Q 042899 73 NRHY 76 (93)
Q Consensus 73 ~~~~ 76 (93)
...+
T Consensus 130 ~~~~ 133 (143)
T 3egn_A 130 ARPK 133 (143)
T ss_dssp SCC-
T ss_pred CCCc
Confidence 6544
No 155
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=90.41 Aligned_cols=71 Identities=25% Similarity=0.258 Sum_probs=64.4
Q ss_pred CCcccCHHHHHHHhcccCCc----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQV----TKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i----~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.| ..|.|+.++ +++++|||||+|.+.+++.+|+.. ++..++++.|.|..+.+.
T Consensus 31 Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 31 LPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred CCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 78999999999999999875 689999884 799999999999999999999986 999999999999987544
No 156
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=87.10 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=60.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe-----cCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL-----DVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~-----~~~~l~v~~~~~~~ 74 (93)
|++++++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|||..+ .+++|.|.+++.-+
T Consensus 35 L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp GGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 5788999999999999999999877532 68999999999999999999999988 68899999987443
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=1.7e-17 Score=92.07 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=63.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|..+.++.+ ++|||||+|.+.+++.+|+..|+|..+.|+.|.|.+++++.
T Consensus 81 l~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 81 LGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 6889999999999999999999998765 47899999999999999999999999999999999987753
No 158
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=86.45 Aligned_cols=69 Identities=13% Similarity=0.167 Sum_probs=62.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++. .++||||+|.+.++|.+|+..|||..+.|+.|.|.+++....
T Consensus 18 Lp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 18 LPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 688999999999999999999988763 457999999999999999999999999999999999976443
No 159
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=1.9e-16 Score=90.59 Aligned_cols=73 Identities=32% Similarity=0.480 Sum_probs=67.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.+..
T Consensus 21 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~ 93 (196)
T 1l3k_A 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRE 93 (196)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC--
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcc
Confidence 789999999999999999999999999998999999999999999999999985 8999999999999986654
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=9e-17 Score=89.92 Aligned_cols=70 Identities=21% Similarity=0.410 Sum_probs=66.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecC--eEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV--RVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~--~~l~v~~~ 70 (93)
||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..+.| ++|.|.+|
T Consensus 97 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 97 LPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 68899999999999999999999999998889999999999999999999999999999977 89999875
No 161
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=5.1e-17 Score=86.69 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeE-----EEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV-----IFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~-----l~v~~~~~~~~ 75 (93)
||+++++++|+++|..||.|..+.|+.+ |||||+|.+.++|.+|+..||+..+.|+. |.|..+.+...
T Consensus 24 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 24 LPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp CCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC----
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCCC
Confidence 6889999999999999999999988765 79999999999999999999999999988 77777655443
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=83.83 Aligned_cols=69 Identities=22% Similarity=0.277 Sum_probs=62.4
Q ss_pred CCcccCHHHHHHHhcccCCceEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKA-TIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~-~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+ .++.++.++ .|||+|.+.+++.+|+..|++..+.|+.|.|.++.+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 23 IPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp ECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 68899999999999999999999 577776543 3999999999999999999999999999999999876
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.4e-16 Score=87.25 Aligned_cols=74 Identities=16% Similarity=0.363 Sum_probs=67.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|.++.+..++. ++++|+|||+|.+.++|.+|+..+++..+.|+.|.|.++.+...
T Consensus 8 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 8 LDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp EETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 678999999999999999999999998864 77899999999999999999999999999999999999866543
No 164
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=3.3e-16 Score=79.84 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=61.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+++|+.| .|..+.+. +++|||||+|.+.++|.+|+..|++..+.|+.|.|.++....
T Consensus 13 Lp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 13 LPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 78999999999999999 99988874 567999999999999999999999999999999999986544
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.8e-16 Score=84.79 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=61.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCcEecC--eEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGY-GYMTSSTEEEAQKALVDMNKMLLDV--RVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-~fv~f~~~~~~~~a~~~l~~~~~~~--~~l~v~~~~~~~ 74 (93)
|++.+++++|+++|+.||.|.++.+.. + .|| |||+|.+.++|..|+..|||..+.| +.|.|.++++..
T Consensus 33 L~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 33 PLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp CCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 678999999999999999999998864 2 275 9999999999999999999999987 689999998764
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.8e-16 Score=88.45 Aligned_cols=70 Identities=24% Similarity=0.390 Sum_probs=65.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeE--EEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRV--IFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~--l~v~~~ 70 (93)
||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..+.|+. |.|.+|
T Consensus 96 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 96 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 6789999999999999999999999999888999999999999999999999999999999965 777764
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=9.7e-17 Score=92.98 Aligned_cols=73 Identities=25% Similarity=0.370 Sum_probs=65.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.++.++.+++.+|||||+|.+.++|.+|+..|++..+.|+.|.|.++...
T Consensus 36 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~ 108 (216)
T 2qfj_A 36 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI 108 (216)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence 7889999999999999999999999999888999999999999999999999999999999999999876543
No 168
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.3e-17 Score=85.91 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=61.1
Q ss_pred CCcc-cCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEecCeEEEEEEecCCCCC
Q 042899 1 VSFS-TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNK--MLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~--~~~~~~~l~v~~~~~~~~~ 76 (93)
||++ +++++|+++|+.||.|.++.+++ .+|||||+|.+.++|.+|+..|++ ..+.|+.|.|.+++.....
T Consensus 33 Lp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~ 105 (112)
T 1x4f_A 33 LPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 105 (112)
T ss_dssp CCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSS
T ss_pred CCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccc
Confidence 6887 99999999999999999999864 358999999999999999998864 5699999999999765443
No 169
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.68 E-value=3.1e-16 Score=82.46 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=60.7
Q ss_pred CHHHHHHHhcccCCceEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 6 TKEMLADAFSQFGQVTKATIIMDIGK--NRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~~i~~~~~~--~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
.+++|++.|++||.|.++.|++++.+ +.++|++||.|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence 45799999999999999999988754 36789999999999999999999999999999999998754
No 170
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.1e-16 Score=81.32 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=57.5
Q ss_pred cccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 3 FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
.++++++|+++|++||.|..+.|+ ++++|||||+|.+.++|..|+..++ .+.+++|.|.++++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCCC
Confidence 468999999999999999999887 3678999999999999999999744 467899999998766543
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=2.9e-17 Score=88.87 Aligned_cols=69 Identities=26% Similarity=0.303 Sum_probs=63.0
Q ss_pred CCcccCHHHHHHHhcccCCce--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVT--KATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.| .|. .|.|+.++. ++++|||||+|.+.++|.+|+.. ++..++|+.|.|..+.+
T Consensus 50 Lp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 50 LPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp CCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred CCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 78999999999999999 677 899999987 99999999999999999999984 77899999999988754
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=3.5e-16 Score=94.42 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=65.7
Q ss_pred CCcc-cCHHHHHHHhcccCCceEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFS-TTKEMLADAFSQFGQVTKATIIMDIG-KNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~-~~~~~l~~~f~~~G~i~~~~i~~~~~-~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||.+ +++++|+++|+.||.|..+.++.+.. ++.++|||||.|.+.++|.+|+ .|+|..+.|+.|.|.+++++
T Consensus 218 lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 218 LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 5778 99999999999999999999998865 5899999999999999999999 99999999999999999875
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=5.5e-16 Score=87.15 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=63.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEec---CeEEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD---VRVIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~---~~~l~v~~~ 70 (93)
||.++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|.+|+..|+|..+. +++|.|.++
T Consensus 103 l~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 103 ISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 68899999999999999999999999886 5889999999999999999999999998765 489999986
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=1.8e-15 Score=91.02 Aligned_cols=75 Identities=20% Similarity=0.386 Sum_probs=70.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.+++.+|+..+++..+.|+.|.|.++.+...
T Consensus 103 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 103 LPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 688999999999999999999999999988999999999999999999999999999999999999999976554
No 175
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=1e-15 Score=92.10 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=68.7
Q ss_pred CCccc-CHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFST-TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~-~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||.++ ++++|+++|+.||.|..+.+..++ +++++|+|||.|.+.++|.+|+..|+|..+.|+.|.|.++++...
T Consensus 192 lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 67784 999999999999999999999886 689999999999999999999999999999999999999987655
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=5.9e-16 Score=89.84 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=62.3
Q ss_pred CC-cccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VS-FSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~-~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
|+ +.+++++|+++|+.||.|.+++++.+ .+|||||+|.+.++|.+|+..|||..+.|+.|.|.+++..
T Consensus 12 L~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 12 LDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 56 78999999999999999999998765 3689999999999999999999999999999999998643
No 177
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=4e-16 Score=83.94 Aligned_cols=67 Identities=21% Similarity=0.349 Sum_probs=60.5
Q ss_pred ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 4 STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 4 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
++++++|+++|+.||.|..+.+. ..+|||||+|.+.++|.+|+..|++..+.|+.|.|.++++....
T Consensus 48 ~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 48 DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 68999999999999999999885 45689999999999999999999999999999999999876544
No 178
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.66 E-value=1e-15 Score=82.01 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=60.3
Q ss_pred HHHHHHHhcccCCceEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 7 KEMLADAFSQFGQVTKATIIMDIG----KNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 7 ~~~l~~~f~~~G~i~~~~i~~~~~----~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
+++|++.|++||.|.++.|+.++. +++.+|++||.|.+.++|.+|+..|||..+.|+.|.|.++..
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 579999999999999999998864 356789999999999999999999999999999999998754
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=7.4e-16 Score=86.86 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=62.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..|+|..+.|+.|.|.+++++
T Consensus 107 lp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 107 LSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 68899999999999999987655 457889999999999999999999999999999999999999765
No 180
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=9e-16 Score=78.47 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=54.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE--ecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKML--LDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~--~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++.++..
T Consensus 19 Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 19 CTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC----
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCc
Confidence 7899999999999999999999998764 67999999999999873 45654 5699999999877543
No 181
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=80.16 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=58.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHYNT 78 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~~~ 78 (93)
||+++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|.+++.. ...+.++.|.|.++++.....+
T Consensus 13 Lp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~~~ 83 (88)
T 1wf0_A 13 CTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNSNS 83 (88)
T ss_dssp CCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCCCS
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCCCC
Confidence 7889999999999999999999988754 578999999999998754321 3456899999999887655543
No 182
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-15 Score=79.12 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=58.8
Q ss_pred CHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
.+++|+++|++||.|..+.| .++ .++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+....
T Consensus 39 ~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 39 IREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp HHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCS
T ss_pred HHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCc
Confidence 36799999999999999965 443 37899999999999999999999999999999999999775543
No 183
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=2.7e-15 Score=86.34 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=63.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.++.+. ++.++|||||+|.+.++|.+|+..+ +..+.|+.|.|..++..
T Consensus 117 Lp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 117 FPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp CCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred CCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 68899999999999999999999999886 4889999999999999999999865 56999999999976543
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1.7e-15 Score=85.08 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=66.4
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCcEec---CeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKN--RSKGYGYMTSSTEEEAQKALVDMNKMLLD---VRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~--~~~g~~fv~f~~~~~~~~a~~~l~~~~~~---~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|+.||.|..++++.++.++ +++|||||+|.+.++|.+|+..+++..+. ++.+.+..+.+...
T Consensus 11 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 11 VPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc
Confidence 78999999999999999999999999998776 89999999999999999999999998765 56778877765443
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=3.3e-15 Score=89.81 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=64.9
Q ss_pred CCcccCHHHHH----HHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLA----DAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||+++++++|+ ++|+.||.|..|.+.. +++.+|||||+|.+.++|.+|+..|+|..+.|+.|.|.+++...
T Consensus 17 lp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 17 LNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 91 (282)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCc
Confidence 68899999976 8999999999998875 57889999999999999999999999999999999999987654
No 186
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=1.2e-15 Score=85.33 Aligned_cols=71 Identities=25% Similarity=0.494 Sum_probs=65.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+++++++|+++|+.||.|..+.++.++.+++++|||||.|.+.++|.+|+.. +..+.|+.|.+.++.+.
T Consensus 11 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 11 LNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPR 81 (167)
T ss_dssp CCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCH
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccch
Confidence 789999999999999999999999999988999999999999999999999984 67899999988877543
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=80.61 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEE
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGK---NRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~ 69 (93)
||+++++++|+++|+.||.|. +.++.+..+ ++++|||||+|.+.++|.+|+..++ .++|+.+.+..
T Consensus 16 Lp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 16 LPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 789999999999999999999 888877766 6899999999999999999999873 35565555543
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=3.3e-15 Score=75.71 Aligned_cols=62 Identities=19% Similarity=0.405 Sum_probs=56.6
Q ss_pred CCcccCHHHHHHHhccc----C-------CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEE
Q 042899 1 VSFSTTKEMLADAFSQF----G-------QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~ 69 (93)
||+++++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+ .|++..+.|+.|.|+.
T Consensus 14 Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 14 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 68899999999999999 8 8888887654 689999999999999999 9999999999999873
No 189
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=77.19 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCcccCHHH----HHHHhccc-CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEM----LADAFSQF-GQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~----l~~~f~~~-G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++ |+++|+.| |.|..| ++ |+|||.|.+.++|.+|++.|+|..+.|++|+|.+++...+
T Consensus 17 L~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 17 LPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 688889887 56899999 499887 23 8999999999999999999999999999999999987655
Q ss_pred C
Q 042899 76 Y 76 (93)
Q Consensus 76 ~ 76 (93)
-
T Consensus 87 ~ 87 (96)
T 2diu_A 87 L 87 (96)
T ss_dssp C
T ss_pred e
Confidence 3
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=7.5e-15 Score=88.25 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=61.3
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEec-CeEEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD-VRVIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~-~~~l~v~~~~ 71 (93)
|+.++++++|+++|+.||.|.++++..++ +|+|||+|.+.++|.+|+..|+|..+. |+.|.|.+++
T Consensus 215 l~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 215 LPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999988653 479999999999999999999999999 9999999986
No 191
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.58 E-value=3.8e-15 Score=79.32 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 7 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
+++|++.|++||.|.++.+.++. .+|++||.|.+.++|.+|+..|||..++|+.|.|.++..
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 46899999999999999886542 489999999999999999999999999999999999854
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=5.3e-15 Score=86.86 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=63.0
Q ss_pred CCc-ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSF-STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+ ++++++|+++|+.||.|..+.+..++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.
T Consensus 42 Lp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 42 LNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 677 89999999999999999999998764 689999999999999999999999999999999998754
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=2.4e-14 Score=85.48 Aligned_cols=74 Identities=31% Similarity=0.478 Sum_probs=65.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CcEec---CeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN-KMLLD---VRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~-~~~~~---~~~l~v~~~~~~~~ 75 (93)
||.++++++|+++|+.||.|..+.++.+ .+++++|||||+|.+.++|.+|+..|+ +..+. +++|.|.++.+...
T Consensus 104 l~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 104 LSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 6889999999999999999999999999 579999999999999999999999995 44454 89999999876543
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=9.5e-15 Score=86.42 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=56.5
Q ss_pred CHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe------------cCeEEEEEEecCC
Q 042899 6 TKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLL------------DVRVIFVDYVRPN 73 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~------------~~~~l~v~~~~~~ 73 (93)
++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|++..+ .|+.|.|.+++..
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred cHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 79999999999999999998853 68999999999999999999999999 8999999999765
Q ss_pred CC
Q 042899 74 RH 75 (93)
Q Consensus 74 ~~ 75 (93)
..
T Consensus 230 pn 231 (240)
T 3u1l_A 230 PD 231 (240)
T ss_dssp --
T ss_pred CC
Confidence 44
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=1.2e-14 Score=87.66 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=62.2
Q ss_pred CCcccCHHHHHHHhcccC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCCC
Q 042899 1 VSFSTTKEMLADAFSQFG-QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRHY 76 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~~ 76 (93)
||+++++++|+++|+.|| .|..+.++.++. +.++|||||.|.+.++|.+|+..|++..+.|+.|.|.++.+....
T Consensus 125 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 688999999999999999 999999988865 788999999999999999999999999999999999998765543
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=9.1e-15 Score=83.89 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=62.8
Q ss_pred CCc-ccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 1 VSF-STTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~-~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
||+ ++++++|+++|+.||.|..+.+..++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++++.
T Consensus 11 lp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 11 LNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 678 89999999999999999999988764 679999999999999999999999999999999998754
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.53 E-value=2.5e-14 Score=83.02 Aligned_cols=68 Identities=12% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCcccCHHHHHHHhcccCCc--eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCe----EEEEEEe
Q 042899 1 VSFSTTKEMLADAFSQFGQV--TKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVR----VIFVDYV 70 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i--~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~----~l~v~~~ 70 (93)
||+++++++|+++|+.||.| ..+++..+. +..+|+|||+|.+.++|.+|+..|||..+.|+ ++.|+++
T Consensus 131 Lp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 131 APLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 67899999999999999999 888887664 55669999999999999999999999999886 4666654
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1.6e-14 Score=82.91 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCcccCHHHHHHHhcccC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEec-CeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFG-QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD-VRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~-~~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|+|..+. |+.|.|.++++.
T Consensus 128 l~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 128 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 678899999999999999 9999988653 2689999999999999999999999999 999999999764
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=4.2e-15 Score=83.73 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=62.5
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCCC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNRH 75 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~~ 75 (93)
||+++++++|+++|..||.+.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.++.+...
T Consensus 21 Lp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 21 LNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSC
T ss_pred CCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccc
Confidence 7899999999999999987765 233444568889999999999999999995 999999999999999876543
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=4.4e-14 Score=82.94 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=61.7
Q ss_pred CCcccCHHHHHHHhcccC-CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEec-CeEEEEEEecCC
Q 042899 1 VSFSTTKEMLADAFSQFG-QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD-VRVIFVDYVRPN 73 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~-~~~l~v~~~~~~ 73 (93)
||.++++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|.+|+..|+|..+. |+.|.|.+++++
T Consensus 159 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 159 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 678899999999999999 9999988542 2579999999999999999999999999 999999999874
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=1.1e-13 Score=82.64 Aligned_cols=66 Identities=18% Similarity=0.399 Sum_probs=61.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
||+++++++|+++|+.||.|..+.+..+ +|||||.|.+.++|.+|+..+++..+.|+.|.|.++.+
T Consensus 30 Lp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 30 LPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 7899999999999999999999988643 58999999999999999999999999999999999865
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=9.3e-13 Score=75.27 Aligned_cols=67 Identities=18% Similarity=0.390 Sum_probs=57.4
Q ss_pred CCcccCHHHHHHHhccc----C-------CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEE
Q 042899 1 VSFSTTKEMLADAFSQF----G-------QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~ 69 (93)
||+++++++|+++|+.| | .|..+.+ +..+|||||+|.+.++|.+|+ .|++..+.|+.|.|.+
T Consensus 12 Lp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~ 84 (198)
T 2yh0_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 84 (198)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeC
Confidence 78999999999999999 4 4555544 345789999999999999999 7999999999999998
Q ss_pred ecCCC
Q 042899 70 VRPNR 74 (93)
Q Consensus 70 ~~~~~ 74 (93)
+....
T Consensus 85 ~~~~~ 89 (198)
T 2yh0_A 85 PHDYQ 89 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86653
No 203
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.44 E-value=8.4e-13 Score=73.97 Aligned_cols=68 Identities=16% Similarity=0.347 Sum_probs=58.2
Q ss_pred CCcccCHHHHHHHhccc----C-------CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEE
Q 042899 1 VSFSTTKEMLADAFSQF----G-------QVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~----G-------~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~ 69 (93)
||+++++++|+++|+.| | .|..+.+. ..+|||||+|.+.++|.+|+ .+++..+.|+.|.|.+
T Consensus 12 Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 84 (172)
T 2g4b_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 84 (172)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecC
Confidence 78999999999999999 6 56666554 34689999999999999999 7999999999999998
Q ss_pred ecCCCC
Q 042899 70 VRPNRH 75 (93)
Q Consensus 70 ~~~~~~ 75 (93)
+.....
T Consensus 85 ~~~~~~ 90 (172)
T 2g4b_A 85 PHDYQP 90 (172)
T ss_dssp CSSCCC
T ss_pred CcccCC
Confidence 765433
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=6e-13 Score=82.33 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=55.0
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEec---Ce--EEEEEEec
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLD---VR--VIFVDYVR 71 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~---~~--~l~v~~~~ 71 (93)
|++++++++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|+..|||..+. |+ .|.+.|..
T Consensus 28 l~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 28 LGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp GGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 457899999999999999999887643 4689999999999999999999999873 34 57777763
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=4e-12 Score=64.60 Aligned_cols=57 Identities=25% Similarity=0.301 Sum_probs=52.1
Q ss_pred HHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCC
Q 042899 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPN 73 (93)
Q Consensus 8 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~ 73 (93)
.+|.+.|+.||.+..+++..++ +||+|.+.+.|.+|+. |||..++|+.|+|+.+++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 5789999999999999998763 8999999999999998 9999999999999998764
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.35 E-value=5e-12 Score=73.88 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=59.3
Q ss_pred CHHHHHHHhcccCCceEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 6 TKEMLADAFSQFGQVTKATIIMDIG----KNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~~i~~~~~----~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
.+++|++.|++||.|.++.+..+.. ++..+|++||.|.+.++|.+|+..|+|..+.||.|.+.++.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999986644 34889999999999999999999999999999999999874
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=7.9e-11 Score=60.14 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 8 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
.+|.+.|..||.+..+++..++ +||+|.+.+.|.+|+. |+|..++|+.|+|++-.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 4688999999999999998873 9999999999999998 99999999999998643
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=7.6e-10 Score=59.24 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCcc-cCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CcEecCeEEEEEEe
Q 042899 1 VSFS-TTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSST-EEEAQKALVDMN--KMLLDVRVIFVDYV 70 (93)
Q Consensus 1 L~~~-~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~-~~~~~~a~~~l~--~~~~~~~~l~v~~~ 70 (93)
|+++ ++.++|+++|+.||.|..|.+..+.. .|||.|.+ ..+|..++..++ +..+.+..+.++..
T Consensus 26 l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 26 DLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4667 99999999999999999999887754 59999999 899999999984 66788877777654
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.3e-07 Score=47.92 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=56.7
Q ss_pred CCcccCHHHHHHHhccc-----CCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEE
Q 042899 1 VSFSTTKEMLADAFSQF-----GQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDY 69 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~ 69 (93)
||..++...|+.++..+ |.+..+.+..|. +-|+|.|.+...|.+|.-.|+|..+.|+.|++.-
T Consensus 29 ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 29 LSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 57789999999999999 999999887774 4899999999999999999999999999998864
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.94 E-value=0.00029 Score=35.75 Aligned_cols=62 Identities=10% Similarity=0.014 Sum_probs=50.1
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCcEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNR--SKGYGYMTSSTEEEAQKALVDMNKMLLDV 62 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~--~~g~~fv~f~~~~~~~~a~~~l~~~~~~~ 62 (93)
||+..+++++++.++....+..........+.+ ..+.|++.|.+.+++......++|..+.+
T Consensus 9 LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 9 LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 789999999999999988766655555544333 34789999999999999999999998654
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=0.001 Score=34.47 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=50.9
Q ss_pred HHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 8 EMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 8 ~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
+.++.+|..|+.+..-.....- .-..|.|.+.++|.+|...|++..++|+.++|-++.+..
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 5788999999988876655432 255789999999999999999999999999999988543
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.55 E-value=0.00042 Score=35.53 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=39.6
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDM 55 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l 55 (93)
.|.++...||.++|+.||.+ .|+++.|- -||+.|.+.+.+..++..+
T Consensus 23 FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 23 FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 46788899999999999954 57777762 8999999999999888865
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.001 Score=35.32 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=45.5
Q ss_pred HHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecC-eEEEEEEe
Q 042899 7 KEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDV-RVIFVDYV 70 (93)
Q Consensus 7 ~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~-~~l~v~~~ 70 (93)
...+.+.|+.||.|.+..... ...+-.+.|.+..+|.+|+. .||..+.+ -.|-|...
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 457888999999999876521 22488999999999999998 59999985 66777764
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00049 Score=35.36 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=39.8
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMN 56 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~ 56 (93)
.|.++...||.++|+.|| -..|.++.|- -||+.|.+.+.+..|+..+.
T Consensus 13 FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 13 FPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp CCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 477888999999999999 4467777762 89999999999998888654
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.14 E-value=0.0016 Score=33.33 Aligned_cols=62 Identities=8% Similarity=-0.040 Sum_probs=44.2
Q ss_pred CCcccCHHHHHHHhcccCCceEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCcEecC
Q 042899 1 VSFSTTKEMLADAFSQFGQVTKATIIMDIGKNR--SKGYGYMTSSTEEEAQKALVDMNKMLLDV 62 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~--~~g~~fv~f~~~~~~~~a~~~l~~~~~~~ 62 (93)
||+..||+++.+.++.+-.+..........+.+ ....||+.|.+.+++......++|..+.+
T Consensus 17 LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 17 LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 799999999998887765433222222222221 23688999999999999999999988654
No 216
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.09 E-value=0.0011 Score=36.37 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.6
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 042899 22 KATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58 (93)
Q Consensus 22 ~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~ 58 (93)
.+++.++. .+.+||+||+|.+.++|.+|+..+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 35666664 468999999999999999999887754
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.04 E-value=0.00099 Score=35.93 Aligned_cols=65 Identities=14% Similarity=0.183 Sum_probs=46.1
Q ss_pred CHHHHHHHhcccCCceEE-EEEe--------cCCCC-----CcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 6 TKEMLADAFSQFGQVTKA-TIIM--------DIGKN-----RSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~-~i~~--------~~~~~-----~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
....+.+.|++||.|.+- .... .+.+. ....|-.++|++..+|.+|+. .||..+.|..|-|...+
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 345678899999998751 1110 00001 124588999999999999998 59999999988888653
No 218
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.0097 Score=30.79 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=49.1
Q ss_pred CCcccCHHHHHHHhcc-----cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecCCC
Q 042899 1 VSFSTTKEMLADAFSQ-----FGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRPNR 74 (93)
Q Consensus 1 L~~~~~~~~l~~~f~~-----~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~~~ 74 (93)
||.+++++.|+-+|+. -|.+..+.... +-|+|+|.+...+.+.++. ..+.+.+..|.|.-..+..
T Consensus 16 lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~~~ 85 (104)
T 2dhx_A 16 LPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPPRA 85 (104)
T ss_dssp CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCCCC
T ss_pred CCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCCCC
Confidence 6788999999999976 25666665432 4789999999999998863 4678889899997554433
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.57 E-value=0.0013 Score=35.79 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=36.5
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHh-CCcEecCeEEEEEEecC
Q 042899 31 KNRSKGYGYMTSSTEEEAQKALVDM-NKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 31 ~~~~~g~~fv~f~~~~~~~~a~~~l-~~~~~~~~~l~v~~~~~ 72 (93)
..+.+|+++++|.+.+.|.+|+..+ |+..++| .+.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567899999999999999999999 9999999 899987754
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.15 E-value=0.004 Score=40.29 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred CcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 042899 2 SFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALV 53 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~ 53 (93)
+..+++.+|.++|+.||.|.++.+..+. | -|+.|+|.+.+.+.+++.
T Consensus 61 ~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 61 PEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp CCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 4678899999999999999998776543 2 599999999988887654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.30 E-value=0.66 Score=30.44 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=38.2
Q ss_pred CcccCHHHHHHHhcccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 042899 2 SFSTTKEMLADAFSQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNK 57 (93)
Q Consensus 2 ~~~~~~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~ 57 (93)
+..+...+|.+.|+.||. ..|.++.+ ..|||.|.+.+.+..++..++.
T Consensus 448 ~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 448 PKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 456778899999999995 46666554 2799999999999999887753
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.07 E-value=3.2 Score=19.54 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=33.4
Q ss_pred CHHHHHHHhcccCCc-----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEec
Q 042899 6 TKEMLADAFSQFGQV-----TKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVR 71 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i-----~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~ 71 (93)
...+|..++..-+.+ =.+.+.. .|.||+.... .+..++..|++..+.|+.+.++.++
T Consensus 14 ~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 14 RAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp -CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 334566666544433 2444422 2788888753 5667778888888999988887653
No 223
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=53.92 E-value=21 Score=18.28 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=40.2
Q ss_pred cccCHHHHHHHh-cccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 3 FSTTKEMLADAF-SQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 3 ~~~~~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
+.+.-++|+.-. ..||.-..++...+ -..|-..+.++..+|++.|+... ..+.++|-...+
T Consensus 26 RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~ 87 (103)
T 2cu1_A 26 RPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVIN 87 (103)
T ss_dssp SSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEEC
T ss_pred CCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCC-cccceEEEEecC
Confidence 345666676555 57888888876532 34688899999999999877653 233445444333
No 224
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=45.08 E-value=17 Score=14.82 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=11.9
Q ss_pred cccCHHHHHHHhccc
Q 042899 3 FSTTKEMLADAFSQF 17 (93)
Q Consensus 3 ~~~~~~~l~~~f~~~ 17 (93)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 467889999998765
No 225
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=44.02 E-value=40 Score=18.67 Aligned_cols=36 Identities=31% Similarity=0.348 Sum_probs=26.8
Q ss_pred cCHHHHHHHhcccCCc---eEEEEEecCCCCCcceEEEE
Q 042899 5 TTKEMLADAFSQFGQV---TKATIIMDIGKNRSKGYGYM 40 (93)
Q Consensus 5 ~~~~~l~~~f~~~G~i---~~~~i~~~~~~~~~~g~~fv 40 (93)
.++++|+++-...|.+ ++..+..+..+|..+.++|-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 4788999998888866 35666666447888888874
No 226
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=36.18 E-value=30 Score=17.71 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.0
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCc
Q 042899 34 SKGYGYMTSSTEEEAQKALVDMNKM 58 (93)
Q Consensus 34 ~~g~~fv~f~~~~~~~~a~~~l~~~ 58 (93)
.+||-||+-.+..++..|+..+...
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5799999999999999998765443
No 227
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=35.43 E-value=22 Score=13.11 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=9.1
Q ss_pred CHHHHHHHhccc
Q 042899 6 TKEMLADAFSQF 17 (93)
Q Consensus 6 ~~~~l~~~f~~~ 17 (93)
++.+|+++..+|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 567888887766
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=35.05 E-value=43 Score=16.43 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=20.7
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCc
Q 042899 34 SKGYGYMTSSTEEEAQKALVDMNKM 58 (93)
Q Consensus 34 ~~g~~fv~f~~~~~~~~a~~~l~~~ 58 (93)
.+||.||.....++...++....+.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999998888888766654
No 229
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=30.89 E-value=57 Score=16.53 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=34.2
Q ss_pred ccCHHHHHHHh-cccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 042899 4 STTKEMLADAF-SQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58 (93)
Q Consensus 4 ~~~~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~ 58 (93)
-+.-++|+.-. ..||.-..+....+ .-.|-..+.++..+|+..|+..
T Consensus 39 Pv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs 86 (100)
T 2npt_B 39 PVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS 86 (100)
T ss_dssp SCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC
Confidence 34556666554 57898888877654 3567889999999999976644
No 230
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.90 E-value=82 Score=17.74 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=28.9
Q ss_pred CHHHHHHHh--cccCCceEEEEEecCCCCCcceEEEEEeCC-HHHHHHHH
Q 042899 6 TKEMLADAF--SQFGQVTKATIIMDIGKNRSKGYGYMTSST-EEEAQKAL 52 (93)
Q Consensus 6 ~~~~l~~~f--~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~-~~~~~~a~ 52 (93)
+..+|.+.| +.|..+. ++...++ ..+.|++.|.|.+ -.-...|+
T Consensus 34 s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 346788866 8997765 5555554 4577899999974 33444444
No 231
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.83 E-value=59 Score=16.06 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=18.7
Q ss_pred CceEEEEEecCCCCCcceEEEEEeCC
Q 042899 19 QVTKATIIMDIGKNRSKGYGYMTSST 44 (93)
Q Consensus 19 ~i~~~~i~~~~~~~~~~g~~fv~f~~ 44 (93)
.|..+++..-...++.+++|-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 35566665554568889999999975
No 232
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=28.72 E-value=61 Score=16.20 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=39.1
Q ss_pred ccCHHHHHHHh-cccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEecCeEEEEEEecC
Q 042899 4 STTKEMLADAF-SQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKMLLDVRVIFVDYVRP 72 (93)
Q Consensus 4 ~~~~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~~~~~~~l~v~~~~~ 72 (93)
-+.-++|+.-. ..||...++....+ --.|-..+.++..+|+..|+... ..+.|+|-...+
T Consensus 23 Pvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~-~mkSLRIlL~~~ 83 (94)
T 2jrh_A 23 PVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSS-SMKSLRILLLSQ 83 (94)
T ss_dssp SCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHST-TTTEEEEEEEEC
T ss_pred CccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCc-cccceEEEEEcC
Confidence 34556666554 57898888877644 34578899999999999766443 233445544433
No 233
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=28.62 E-value=66 Score=16.55 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=33.2
Q ss_pred ccCHHHHHHHh-cccCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 042899 4 STTKEMLADAF-SQFGQVTKATIIMDIGKNRSKGYGYMTSSTEEEAQKALVDMNKM 58 (93)
Q Consensus 4 ~~~~~~l~~~f-~~~G~i~~~~i~~~~~~~~~~g~~fv~f~~~~~~~~a~~~l~~~ 58 (93)
-+.-++|+.-. ..||....+....+ --.|-..+.++..+|+..|+..
T Consensus 50 Pvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs 97 (111)
T 2c60_A 50 PVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS 97 (111)
T ss_dssp SCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC
Confidence 34456666544 46888888876644 2357888999999999977654
No 234
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.17 E-value=74 Score=18.34 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=22.3
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCc
Q 042899 33 RSKGYGYMTSSTEEEAQKALVDMNKM 58 (93)
Q Consensus 33 ~~~g~~fv~f~~~~~~~~a~~~l~~~ 58 (93)
..+||-||+-.+..++..|+..+.+.
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 36799999999999999998877664
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=31.51 E-value=15 Score=18.88 Aligned_cols=53 Identities=11% Similarity=0.021 Sum_probs=29.1
Q ss_pred CHHHHHHHhcccCCceEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCcE
Q 042899 6 TKEMLADAFSQFGQVTKATIIMDIGKNRS-KGYGYMTSSTEEEAQKALVDMNKML 59 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~~i~~~~~~~~~-~g~~fv~f~~~~~~~~a~~~l~~~~ 59 (93)
+++++..+....+ +..+.+......|+. -..-+-.|.+.++|.+|+..|....
T Consensus 35 ~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 35 NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3455666666664 333444332222222 1233447888999999988776543
No 236
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=25.38 E-value=76 Score=16.14 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=18.6
Q ss_pred CceEEEEEecCCCCCcceEEEEEeCC
Q 042899 19 QVTKATIIMDIGKNRSKGYGYMTSST 44 (93)
Q Consensus 19 ~i~~~~i~~~~~~~~~~g~~fv~f~~ 44 (93)
.|..+++..-...++.+++|-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 35566665544458889999999975
No 237
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.16 E-value=13 Score=20.21 Aligned_cols=9 Identities=22% Similarity=0.977 Sum_probs=6.4
Q ss_pred ceEEEEEeC
Q 042899 35 KGYGYMTSS 43 (93)
Q Consensus 35 ~g~~fv~f~ 43 (93)
+||+||.-.
T Consensus 21 kGfGFI~~~ 29 (148)
T 3ts2_A 21 MGFGFLSMT 29 (148)
T ss_dssp TTEEEEEEE
T ss_pred CCeeEEeeC
Confidence 578888754
No 238
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.87 E-value=84 Score=16.15 Aligned_cols=25 Identities=20% Similarity=0.062 Sum_probs=17.9
Q ss_pred ceEEEEEecCCCCCcceEEEEEeCC
Q 042899 20 VTKATIIMDIGKNRSKGYGYMTSST 44 (93)
Q Consensus 20 i~~~~i~~~~~~~~~~g~~fv~f~~ 44 (93)
|..+++..-...++.+++|-|+|.+
T Consensus 6 iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 6 VTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp EEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEeCCCCCEEEEEEEEECC
Confidence 4556665444568889999999975
No 239
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=22.33 E-value=37 Score=16.21 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=13.7
Q ss_pred CHHHHHHHhcccCCceEE
Q 042899 6 TKEMLADAFSQFGQVTKA 23 (93)
Q Consensus 6 ~~~~l~~~f~~~G~i~~~ 23 (93)
|--|+++++.+||.+..+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 446888999999987643
No 240
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.53 E-value=1e+02 Score=16.46 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=21.2
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCcE
Q 042899 34 SKGYGYMTSSTEEEAQKALVDMNKML 59 (93)
Q Consensus 34 ~~g~~fv~f~~~~~~~~a~~~l~~~~ 59 (93)
.+||-||.....++...++....|..
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 57999999999888888887766653
Done!