Query 042902
Match_columns 599
No_of_seqs 736 out of 4413
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.4E-49 8.2E-54 449.2 26.5 359 1-363 299-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.3E-45 7.8E-50 416.5 24.9 344 1-349 274-717 (768)
3 2id5_A Lingo-1, leucine rich r 100.0 3.5E-43 1.2E-47 377.6 24.4 343 2-353 17-360 (477)
4 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-43 2E-47 387.3 25.8 347 1-354 37-563 (606)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-42 4E-47 398.3 26.9 345 1-353 78-564 (844)
6 3v47_A TOLL-like receptor 5B a 100.0 1.1E-42 3.6E-47 371.5 23.6 342 3-354 17-413 (455)
7 3v47_A TOLL-like receptor 5B a 100.0 7.2E-43 2.5E-47 372.8 19.6 327 1-333 35-415 (455)
8 3t6q_A CD180 antigen; protein- 100.0 1E-41 3.5E-46 377.3 27.3 343 1-349 38-438 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 3E-42 1E-46 378.7 21.2 348 1-354 33-536 (570)
10 4eco_A Uncharacterized protein 100.0 3.4E-42 1.2E-46 381.9 20.1 343 1-352 211-603 (636)
11 4eco_A Uncharacterized protein 100.0 3.5E-42 1.2E-46 381.8 18.0 334 1-347 86-547 (636)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.4E-41 2.5E-45 366.8 27.2 335 1-353 36-514 (562)
13 2z7x_B TOLL-like receptor 1, v 100.0 3.9E-41 1.3E-45 365.7 24.3 335 1-353 5-485 (520)
14 1ziw_A TOLL-like receptor 3; i 100.0 7.5E-41 2.6E-45 375.4 26.6 353 1-354 227-627 (680)
15 3t6q_A CD180 antigen; protein- 100.0 3.1E-40 1E-44 365.5 30.3 345 1-347 62-511 (606)
16 2id5_A Lingo-1, leucine rich r 100.0 1E-40 3.4E-45 358.4 23.2 324 1-331 37-361 (477)
17 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-40 6.6E-45 367.1 25.6 210 120-331 348-563 (606)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-40 1.9E-44 359.9 25.0 316 1-331 57-515 (562)
19 2z63_A TOLL-like receptor 4, v 100.0 1.4E-40 4.7E-45 365.5 20.2 325 1-333 57-538 (570)
20 4ecn_A Leucine-rich repeat pro 100.0 2.5E-40 8.5E-45 373.6 22.0 315 1-327 328-767 (876)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-40 4.4E-45 364.1 19.0 178 1-184 31-210 (549)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-39 4.2E-44 362.3 26.5 347 1-353 57-584 (635)
23 4ecn_A Leucine-rich repeat pro 100.0 7E-40 2.4E-44 369.9 24.1 340 1-350 453-841 (876)
24 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-40 1.2E-44 358.1 20.9 316 1-331 26-486 (520)
25 3j0a_A TOLL-like receptor 5; m 100.0 1.7E-39 5.7E-44 372.1 25.9 345 1-352 29-542 (844)
26 1ziw_A TOLL-like receptor 3; i 100.0 9.1E-39 3.1E-43 358.5 29.2 326 1-331 253-627 (680)
27 3o6n_A APL1; leucine-rich repe 100.0 7.3E-39 2.5E-43 334.8 20.0 313 18-352 43-355 (390)
28 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-38 3.7E-43 348.8 20.4 338 1-353 55-514 (549)
29 3o6n_A APL1; leucine-rich repe 100.0 5.3E-38 1.8E-42 328.3 24.4 329 1-353 50-378 (390)
30 3oja_B Anopheles plasmodium-re 100.0 1.4E-38 4.7E-43 350.9 20.5 312 19-352 50-361 (597)
31 4asz_A BDNF/NT-3 growth factor 100.0 1.9E-39 6.6E-44 323.5 11.1 169 428-599 13-199 (299)
32 3omv_A RAF proto-oncogene seri 100.0 1.1E-38 3.6E-43 318.2 15.6 167 427-599 35-203 (307)
33 4aoj_A High affinity nerve gro 100.0 6.8E-39 2.3E-43 324.0 13.7 168 429-599 42-229 (329)
34 4fmz_A Internalin; leucine ric 100.0 2.2E-37 7.5E-42 318.3 24.7 305 16-347 40-344 (347)
35 4gt4_A Tyrosine-protein kinase 100.0 1.2E-38 4.1E-43 319.1 13.2 168 429-599 27-216 (308)
36 4aw0_A HPDK1, 3-phosphoinositi 100.0 1.7E-38 5.9E-43 315.8 13.9 168 428-599 32-203 (311)
37 3oja_B Anopheles plasmodium-re 100.0 2.4E-37 8.1E-42 341.0 23.8 329 1-353 56-384 (597)
38 1o6v_A Internalin A; bacterial 100.0 6.6E-37 2.2E-41 327.5 25.3 319 2-350 52-389 (466)
39 4fih_A Serine/threonine-protei 100.0 3.5E-38 1.2E-42 318.4 14.3 165 428-599 74-239 (346)
40 4b9d_A Serine/threonine-protei 100.0 3.8E-38 1.3E-42 318.6 12.8 167 428-599 24-194 (350)
41 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-37 1.1E-41 312.0 18.3 254 99-354 51-309 (313)
42 4fie_A Serine/threonine-protei 100.0 2.2E-37 7.7E-42 320.2 15.5 165 428-599 151-316 (423)
43 4fmz_A Internalin; leucine ric 100.0 6.1E-36 2.1E-40 307.5 24.2 298 1-326 49-346 (347)
44 1o6v_A Internalin A; bacterial 100.0 1.2E-35 4.1E-40 317.7 26.8 314 5-348 33-365 (466)
45 4g8a_A TOLL-like receptor 4; l 100.0 9.5E-36 3.3E-40 330.9 25.5 324 1-330 81-584 (635)
46 3fpq_A Serine/threonine-protei 100.0 9.7E-37 3.3E-41 301.8 14.6 161 431-599 29-199 (290)
47 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-35 1.2E-39 312.2 26.9 292 1-327 47-353 (457)
48 3hyh_A Carbon catabolite-derep 100.0 1.4E-36 4.9E-41 297.9 14.7 164 428-599 13-180 (275)
49 4g3f_A NF-kappa-beta-inducing 100.0 1.1E-36 3.9E-41 306.5 13.3 163 428-599 58-225 (336)
50 4g31_A Eukaryotic translation 100.0 1.3E-36 4.4E-41 303.6 13.6 168 429-599 6-199 (299)
51 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-35 8.4E-40 301.1 23.3 287 21-324 34-331 (332)
52 1xku_A Decorin; proteoglycan, 100.0 4.5E-35 1.5E-39 298.9 25.1 289 20-324 31-330 (330)
53 3hmm_A TGF-beta receptor type- 100.0 1.7E-36 5.7E-41 304.2 14.3 167 429-599 4-181 (303)
54 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-35 8.9E-40 300.9 23.3 283 1-300 38-331 (332)
55 3ubd_A Ribosomal protein S6 ki 100.0 2.9E-37 9.9E-42 307.1 8.1 166 428-599 24-195 (304)
56 1xku_A Decorin; proteoglycan, 100.0 8.5E-35 2.9E-39 296.8 25.8 270 43-327 30-307 (330)
57 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-35 6.2E-40 299.2 18.5 249 20-276 50-302 (313)
58 4ase_A Vascular endothelial gr 100.0 1.9E-36 6.6E-41 308.5 11.3 179 418-599 54-256 (353)
59 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-34 1.2E-38 304.4 26.8 308 7-348 29-351 (457)
60 1jl5_A Outer protein YOPM; leu 100.0 6.9E-33 2.4E-37 294.2 26.3 260 20-327 111-371 (454)
61 1jl5_A Outer protein YOPM; leu 100.0 1.7E-33 5.7E-38 299.0 21.2 247 1-279 16-291 (454)
62 4b99_A Mitogen-activated prote 100.0 1E-33 3.4E-38 293.5 14.1 167 428-599 54-231 (398)
63 3v5w_A G-protein coupled recep 100.0 3.8E-33 1.3E-37 301.4 15.3 164 428-599 189-359 (689)
64 2z80_A TOLL-like receptor 2, v 100.0 5.3E-33 1.8E-37 286.3 15.2 283 19-331 30-319 (353)
65 2z80_A TOLL-like receptor 2, v 100.0 6.6E-33 2.3E-37 285.5 15.6 276 2-306 37-318 (353)
66 4f9c_A Cell division cycle 7-r 100.0 6.3E-33 2.1E-37 284.5 14.2 145 426-579 19-169 (361)
67 2z66_A Variable lymphocyte rec 100.0 4.6E-32 1.6E-36 273.5 19.6 275 23-331 10-292 (306)
68 2z66_A Variable lymphocyte rec 100.0 2.4E-32 8.1E-37 275.6 16.8 279 2-312 13-297 (306)
69 3uto_A Twitchin; kinase, muscl 100.0 1.5E-32 5.2E-37 298.5 16.0 166 428-599 157-325 (573)
70 3zyj_A Leucine-rich repeat-con 100.0 2.3E-31 7.9E-36 282.3 22.7 248 45-302 44-292 (440)
71 3zyi_A Leucine-rich repeat-con 100.0 2.5E-31 8.4E-36 283.2 22.7 249 45-303 55-304 (452)
72 3zyi_A Leucine-rich repeat-con 100.0 1.8E-31 6.2E-36 284.2 21.3 251 74-330 55-307 (452)
73 1z7x_W Ribonuclease inhibitor; 100.0 8.7E-35 3E-39 310.7 -5.5 322 1-327 8-384 (461)
74 3zyj_A Leucine-rich repeat-con 100.0 2.7E-31 9.4E-36 281.8 21.3 251 74-330 44-296 (440)
75 1ozn_A Reticulon 4 receptor; N 100.0 3.2E-31 1.1E-35 264.5 19.2 267 23-299 14-284 (285)
76 1ozn_A Reticulon 4 receptor; N 100.0 2.6E-31 8.7E-36 265.2 17.6 232 100-332 34-267 (285)
77 3o53_A Protein LRIM1, AGAP0063 100.0 1E-32 3.5E-37 279.6 6.4 267 23-308 13-282 (317)
78 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.3E-39 309.5 -10.3 327 1-328 33-413 (461)
79 4aw2_A Serine/threonine-protei 100.0 1E-31 3.5E-36 282.8 11.8 173 423-599 69-245 (437)
80 4fcg_A Uncharacterized protein 100.0 1.8E-30 6.2E-35 264.1 19.4 223 100-326 83-314 (328)
81 4fcg_A Uncharacterized protein 100.0 1.8E-30 6.2E-35 264.1 19.3 225 44-302 81-314 (328)
82 3o53_A Protein LRIM1, AGAP0063 100.0 2.3E-32 7.7E-37 277.1 5.0 266 46-331 12-281 (317)
83 3g06_A SSPH2 (leucine-rich rep 100.0 7.4E-30 2.5E-34 279.3 24.8 259 22-329 42-300 (622)
84 1wwl_A Monocyte differentiatio 100.0 6.6E-32 2.2E-36 273.0 7.7 248 69-327 39-310 (312)
85 2qkw_B Protein kinase; three-h 100.0 6.2E-31 2.1E-35 267.1 13.5 176 421-599 32-210 (321)
86 1wwl_A Monocyte differentiatio 100.0 4.5E-31 1.5E-35 266.9 10.7 248 17-279 40-310 (312)
87 3s95_A LIMK-1, LIM domain kina 100.0 3.2E-30 1.1E-34 260.5 16.9 169 428-599 10-191 (310)
88 3fxz_A Serine/threonine-protei 100.0 4.6E-30 1.6E-34 257.6 17.5 166 427-599 19-185 (297)
89 3g06_A SSPH2 (leucine-rich rep 100.0 4.8E-29 1.6E-33 272.9 26.8 264 1-313 45-308 (622)
90 3uim_A Brassinosteroid insensi 100.0 3.2E-30 1.1E-34 262.4 14.3 186 413-599 15-204 (326)
91 2c30_A Serine/threonine-protei 100.0 9.7E-30 3.3E-34 258.2 17.6 176 417-599 24-210 (321)
92 2vd5_A DMPK protein; serine/th 100.0 1.6E-30 5.4E-35 271.9 11.8 173 423-599 56-232 (412)
93 3oja_A Leucine-rich immune mol 100.0 1.1E-30 3.9E-35 279.8 10.9 235 19-272 33-269 (487)
94 3fe3_A MAP/microtubule affinit 100.0 4.7E-30 1.6E-34 260.9 14.5 166 427-599 14-182 (328)
95 2psq_A Fibroblast growth facto 100.0 4.9E-30 1.7E-34 265.5 14.6 170 427-599 80-274 (370)
96 3v8s_A RHO-associated protein 100.0 2.3E-30 7.7E-35 270.5 11.8 170 424-599 65-238 (410)
97 1o6l_A RAC-beta serine/threoni 100.0 6.5E-30 2.2E-34 260.7 14.6 166 428-599 5-174 (337)
98 3txo_A PKC-L, NPKC-ETA, protei 100.0 7E-30 2.4E-34 262.2 13.9 167 427-599 22-193 (353)
99 3tki_A Serine/threonine-protei 100.0 8.1E-30 2.8E-34 258.9 13.9 169 427-599 6-176 (323)
100 3zgw_A Maternal embryonic leuc 100.0 7.9E-30 2.7E-34 260.9 13.5 169 426-599 8-178 (347)
101 3kul_A Ephrin type-A receptor 100.0 1.4E-29 4.8E-34 257.4 15.0 169 428-599 49-223 (325)
102 2nru_A Interleukin-1 receptor- 100.0 4.9E-29 1.7E-33 251.3 18.6 181 415-599 12-204 (307)
103 3e7e_A HBUB1, BUB1A, mitotic c 100.0 1.1E-29 3.6E-34 262.8 13.9 167 427-599 64-254 (365)
104 3qd2_B Eukaryotic translation 100.0 2.5E-29 8.6E-34 256.2 16.1 170 427-599 5-245 (332)
105 3soc_A Activin receptor type-2 100.0 1.1E-29 3.8E-34 257.9 13.3 166 427-599 23-202 (322)
106 4fr4_A YANK1, serine/threonine 100.0 2.2E-29 7.4E-34 260.8 15.2 165 428-599 15-183 (384)
107 1xjd_A Protein kinase C, theta 100.0 1.8E-29 6E-34 258.2 14.3 169 425-599 14-187 (345)
108 1tki_A Titin; serine kinase, m 100.0 3.7E-29 1.3E-33 253.8 16.5 166 427-599 4-172 (321)
109 3niz_A Rhodanese family protei 100.0 2.6E-29 9E-34 253.8 15.0 167 427-599 20-188 (311)
110 3cbl_A C-FES, proto-oncogene t 100.0 5.5E-30 1.9E-34 266.0 10.3 170 427-599 113-284 (377)
111 1fot_A TPK1 delta, CAMP-depend 100.0 3.5E-29 1.2E-33 253.3 15.9 163 428-599 6-172 (318)
112 4dc2_A Protein kinase C IOTA t 100.0 1.4E-29 4.8E-34 263.1 13.2 167 427-599 51-222 (396)
113 2qol_A Ephrin receptor; recept 100.0 1.5E-29 5.2E-34 262.0 13.1 169 428-599 45-219 (373)
114 2yab_A Death-associated protei 100.0 5.3E-29 1.8E-33 256.3 16.9 166 427-599 11-187 (361)
115 4eqm_A Protein kinase; transfe 100.0 2.9E-29 9.9E-34 251.4 14.2 167 428-599 11-181 (294)
116 3a8x_A Protein kinase C IOTA t 100.0 3.1E-29 1E-33 256.8 14.3 166 428-599 9-179 (345)
117 2zv2_A Calcium/calmodulin-depe 100.0 5E-29 1.7E-33 250.2 15.6 166 427-599 12-206 (298)
118 3oja_A Leucine-rich immune mol 100.0 5.8E-30 2E-34 274.4 9.2 234 44-321 34-270 (487)
119 1kob_A Twitchin; kinase, intra 100.0 7.1E-29 2.4E-33 257.7 16.7 167 427-599 50-219 (387)
120 3sxs_A Cytoplasmic tyrosine-pr 100.0 4.4E-29 1.5E-33 246.5 14.3 168 427-599 7-174 (268)
121 4hcu_A Tyrosine-protein kinase 100.0 2.3E-29 7.8E-34 248.8 12.2 167 428-599 10-176 (269)
122 3p86_A Serine/threonine-protei 100.0 3.2E-29 1.1E-33 252.8 13.5 167 427-599 36-208 (309)
123 3vhe_A Vascular endothelial gr 100.0 1.3E-29 4.4E-34 261.5 10.6 180 417-599 11-264 (359)
124 2i0e_A Protein kinase C-beta I 100.0 4.2E-29 1.4E-33 256.3 14.2 168 426-599 18-190 (353)
125 2x4f_A Myosin light chain kina 100.0 5.9E-29 2E-33 257.5 15.2 162 432-599 93-257 (373)
126 1rdq_E PKA C-alpha, CAMP-depen 100.0 5.5E-29 1.9E-33 255.3 14.8 163 428-599 41-207 (350)
127 3o0g_A Cell division protein k 100.0 1E-28 3.4E-33 247.2 16.1 166 428-599 2-170 (292)
128 1ob3_A PFPK5, cell division co 100.0 3E-29 1E-33 250.6 12.1 166 428-599 2-169 (288)
129 3a62_A Ribosomal protein S6 ki 100.0 3.7E-29 1.3E-33 254.6 12.9 167 427-599 16-190 (327)
130 1luf_A Muscle-specific tyrosin 100.0 3E-29 1E-33 257.0 12.1 171 426-599 45-245 (343)
131 3ugc_A Tyrosine-protein kinase 100.0 2.2E-29 7.6E-34 252.4 10.7 169 428-599 10-186 (295)
132 2z62_A TOLL-like receptor 4, v 100.0 2.5E-28 8.7E-33 242.2 17.9 209 123-332 29-243 (276)
133 2acx_A G protein-coupled recep 100.0 9.6E-29 3.3E-33 266.5 15.7 167 427-599 183-354 (576)
134 3tt0_A Basic fibroblast growth 100.0 6.7E-29 2.3E-33 258.3 13.8 170 427-599 68-262 (382)
135 2y0a_A Death-associated protei 100.0 2.2E-28 7.6E-33 248.7 16.9 165 428-599 11-186 (326)
136 2ivs_A Proto-oncogene tyrosine 100.0 1E-28 3.4E-33 249.8 14.2 170 427-599 22-221 (314)
137 3c0i_A Peripheral plasma membr 100.0 8.5E-29 2.9E-33 254.4 13.7 167 428-599 24-202 (351)
138 3h4j_B AMPK kdaid, SNF1-like p 100.0 8.6E-29 3E-33 252.1 13.5 164 428-599 9-176 (336)
139 3soa_A Calcium/calmodulin-depe 100.0 1.1E-28 3.6E-33 260.8 14.6 168 426-599 9-182 (444)
140 2bdw_A Hypothetical protein K1 100.0 1.3E-28 4.5E-33 253.9 15.0 166 427-599 28-199 (362)
141 1rjb_A FL cytokine receptor; k 100.0 9.1E-29 3.1E-33 253.6 13.7 171 426-599 43-243 (344)
142 2pmi_A Negative RE, cyclin-dep 100.0 1.4E-28 4.9E-33 249.2 14.7 167 427-599 4-177 (317)
143 3l9p_A Anaplastic lymphoma kin 100.0 2.2E-29 7.6E-34 260.4 8.8 169 428-599 71-255 (367)
144 3gen_A Tyrosine-protein kinase 100.0 6.7E-29 2.3E-33 247.3 11.8 168 427-599 23-190 (283)
145 2z62_A TOLL-like receptor 4, v 100.0 7.4E-28 2.5E-32 238.9 19.3 207 99-306 29-241 (276)
146 2r5t_A Serine/threonine-protei 100.0 7.2E-29 2.5E-33 256.3 12.2 166 428-599 38-208 (373)
147 3c4z_A Rhodopsin kinase; Ser/T 100.0 1.9E-28 6.4E-33 263.6 15.8 167 428-599 185-358 (543)
148 4ejn_A RAC-alpha serine/threon 100.0 4.3E-29 1.5E-33 265.2 10.7 167 427-599 147-318 (446)
149 2y94_A 5'-AMP-activated protei 100.0 2.5E-28 8.4E-33 259.7 16.4 165 428-599 16-184 (476)
150 4euu_A Serine/threonine-protei 100.0 2.1E-28 7E-33 248.3 15.1 166 428-599 9-184 (319)
151 3p1a_A MYT1 kinase, membrane-a 100.0 1.2E-28 4.2E-33 249.0 13.0 165 428-599 57-225 (311)
152 2pvf_A Fibroblast growth facto 100.0 2.1E-28 7.1E-33 249.9 14.7 170 427-599 34-228 (334)
153 2izr_A Casein kinase I isoform 100.0 1.8E-28 6.1E-33 249.9 14.0 166 428-599 9-186 (330)
154 3lb7_A RAF proto-oncogene seri 100.0 2.2E-28 7.6E-33 246.5 14.4 167 427-599 35-203 (307)
155 3poz_A Epidermal growth factor 100.0 7E-29 2.4E-33 252.6 10.8 168 428-599 15-188 (327)
156 1t46_A HOMO sapiens V-KIT hard 100.0 1.3E-28 4.5E-33 248.8 12.3 170 427-599 22-216 (313)
157 3uc3_A Serine/threonine-protei 100.0 2.1E-28 7.3E-33 252.3 14.0 165 427-599 19-186 (361)
158 3f3z_A Calcium/calmodulin-depe 100.0 4E-28 1.4E-32 240.9 15.2 166 427-599 8-177 (277)
159 4fvq_A Tyrosine-protein kinase 100.0 1.2E-28 4.2E-33 246.1 11.6 163 428-599 8-186 (289)
160 3ork_A Serine/threonine protei 100.0 6.3E-29 2.1E-33 251.1 9.5 169 427-599 11-188 (311)
161 3rp9_A Mitogen-activated prote 100.0 1.8E-28 6.2E-33 261.4 13.3 168 427-599 52-252 (458)
162 1opk_A P150, C-ABL, proto-onco 100.0 2.1E-28 7.4E-33 262.9 13.9 168 427-599 219-388 (495)
163 3cok_A Serine/threonine-protei 100.0 3.7E-28 1.3E-32 241.3 14.6 168 427-599 10-181 (278)
164 3kex_A Receptor tyrosine-prote 100.0 1E-28 3.5E-33 251.2 10.7 168 428-599 13-186 (325)
165 4e5w_A Tyrosine-protein kinase 100.0 3.2E-28 1.1E-32 244.7 14.2 169 428-599 21-198 (302)
166 3gni_B Strad alpha; kinase fol 100.0 4.1E-28 1.4E-32 253.1 14.9 170 427-599 24-204 (389)
167 3qup_A Tyrosine-protein kinase 100.0 1.6E-28 5.6E-33 249.4 11.5 170 427-599 22-208 (323)
168 3dbq_A Dual specificity protei 100.0 2.5E-28 8.6E-33 250.2 12.8 167 427-599 8-178 (343)
169 2yex_A Serine/threonine-protei 100.0 5.2E-28 1.8E-32 239.8 14.7 169 427-599 6-176 (276)
170 1p4o_A Insulin-like growth fac 100.0 7E-29 2.4E-33 252.0 8.5 175 422-599 19-209 (322)
171 1qcf_A Haematopoetic cell kina 100.0 1.4E-28 4.9E-33 261.6 11.1 168 426-599 186-354 (454)
172 1p9a_G Platelet glycoprotein I 100.0 1.8E-27 6.2E-32 237.5 18.3 207 117-329 5-211 (290)
173 1u5q_A Serine/threonine protei 100.0 3.7E-28 1.3E-32 249.2 13.4 162 428-599 54-219 (348)
174 3lxl_A Tyrosine-protein kinase 100.0 4.1E-28 1.4E-32 246.9 13.7 169 428-599 23-199 (327)
175 3n9x_A Phosphotransferase; mal 100.0 4E-28 1.4E-32 256.5 14.1 168 427-599 25-220 (432)
176 1mp8_A Focal adhesion kinase 1 99.9 2.6E-28 9E-33 242.8 11.8 168 427-599 14-186 (281)
177 3q4u_A Activin receptor type-1 99.9 6E-28 2.1E-32 242.5 14.5 167 427-599 7-186 (301)
178 2vuw_A Serine/threonine-protei 99.9 2.8E-29 9.4E-34 256.6 4.7 161 427-599 19-246 (336)
179 3t9t_A Tyrosine-protein kinase 99.9 2.6E-28 8.7E-33 240.8 11.3 167 428-599 8-174 (267)
180 3og7_A AKAP9-BRAF fusion prote 99.9 3.3E-28 1.1E-32 243.1 12.1 167 427-599 23-191 (289)
181 2zmd_A Dual specificity protei 99.9 4.9E-28 1.7E-32 252.2 13.7 166 428-599 56-225 (390)
182 3dls_A PAS domain-containing s 99.9 3.1E-28 1.1E-32 248.5 11.9 167 426-599 22-198 (335)
183 3oz6_A Mitogen-activated prote 99.9 6.8E-28 2.3E-32 251.3 14.7 168 426-599 7-199 (388)
184 2ac3_A MAP kinase-interacting 99.9 1E-27 3.4E-32 242.8 15.5 168 428-599 12-190 (316)
185 3kn6_A Ribosomal protein S6 ki 99.9 1.3E-27 4.5E-32 242.9 16.3 158 433-599 16-178 (325)
186 2o6q_A Variable lymphocyte rec 99.9 5.9E-27 2E-31 231.6 20.6 206 122-330 16-222 (270)
187 3hko_A Calcium/calmodulin-depe 99.9 4.8E-28 1.6E-32 248.3 13.1 175 422-599 20-243 (345)
188 4agu_A Cyclin-dependent kinase 99.9 7.2E-28 2.5E-32 243.3 14.2 166 428-599 3-171 (311)
189 2w4o_A Calcium/calmodulin-depe 99.9 4.2E-28 1.4E-32 249.0 12.5 164 427-599 52-219 (349)
190 1k9a_A Carboxyl-terminal SRC k 99.9 7E-28 2.4E-32 255.9 14.6 162 427-599 192-355 (450)
191 2xir_A Vascular endothelial gr 99.9 2.6E-28 8.9E-33 247.0 10.7 179 418-599 17-219 (316)
192 4eut_A Serine/threonine-protei 99.9 6E-28 2E-32 252.3 13.5 166 428-599 9-184 (396)
193 1vzo_A Ribosomal protein S6 ki 99.9 1.7E-28 5.9E-33 252.6 9.3 167 428-599 54-229 (355)
194 4f0f_A Serine/threonine-protei 99.9 1.7E-27 5.7E-32 237.7 16.2 163 427-599 18-195 (287)
195 3pfq_A PKC-B, PKC-beta, protei 99.9 8.5E-28 2.9E-32 266.9 15.3 168 426-599 339-511 (674)
196 3fdn_A Serine/threonine-protei 99.9 7.7E-28 2.6E-32 239.1 13.4 165 427-599 8-176 (279)
197 1fmk_A C-SRC, P60-SRC, tyrosin 99.9 3.3E-28 1.1E-32 258.6 11.2 168 426-599 182-350 (452)
198 2a2a_A Death-associated protei 99.9 1.2E-27 3.9E-32 243.0 14.8 165 428-599 12-187 (321)
199 3is5_A Calcium-dependent prote 99.9 6.8E-28 2.3E-32 240.3 12.8 166 428-599 22-195 (285)
200 1ua2_A CAK, cell division prot 99.9 5.1E-28 1.7E-32 248.3 12.2 169 425-599 7-181 (346)
201 3mtl_A Cell division protein k 99.9 2.4E-28 8.3E-33 248.3 9.6 166 428-599 2-169 (324)
202 2w1i_A JAK2; chromosomal rearr 99.9 1.1E-27 3.9E-32 243.6 14.5 169 428-599 41-217 (326)
203 3rfs_A Internalin B, repeat mo 99.9 3.3E-27 1.1E-31 233.6 17.4 222 22-286 21-243 (272)
204 2eue_A Carbon catabolite derep 99.9 1.4E-27 4.7E-32 236.8 14.5 164 428-599 13-180 (275)
205 3op5_A Serine/threonine-protei 99.9 5.3E-28 1.8E-32 249.9 12.0 170 426-599 33-230 (364)
206 2rku_A Serine/threonine-protei 99.9 1.8E-27 6.2E-32 238.3 15.3 167 427-599 14-184 (294)
207 3c1x_A Hepatocyte growth facto 99.9 4.4E-28 1.5E-32 250.8 11.0 168 429-599 90-265 (373)
208 1qpc_A LCK kinase; alpha beta 99.9 5E-28 1.7E-32 240.4 11.0 167 427-599 12-179 (279)
209 2i1m_A Macrophage colony-stimu 99.9 5E-28 1.7E-32 246.9 11.3 171 426-599 44-235 (333)
210 3kk8_A Calcium/calmodulin depe 99.9 2E-27 6.7E-32 236.7 15.2 166 427-599 5-176 (284)
211 3f66_A Hepatocyte growth facto 99.9 9.5E-28 3.3E-32 240.8 12.9 169 428-599 25-201 (298)
212 3i6u_A CDS1, serine/threonine- 99.9 9.9E-28 3.4E-32 252.3 13.6 166 426-599 133-310 (419)
213 1csn_A Casein kinase-1; phosph 99.9 2.5E-27 8.4E-32 237.7 15.8 167 427-599 9-187 (298)
214 3mi9_A Cell division protein k 99.9 1.8E-27 6.2E-32 244.7 15.1 168 428-599 17-197 (351)
215 3mdy_A Bone morphogenetic prot 99.9 2.8E-27 9.5E-32 241.7 16.4 165 426-599 35-215 (337)
216 3lzb_A Epidermal growth factor 99.9 6.6E-28 2.3E-32 245.3 11.6 169 427-599 14-188 (327)
217 2clq_A Mitogen-activated prote 99.9 3.4E-27 1.2E-31 236.3 16.6 167 428-599 22-192 (295)
218 2owb_A Serine/threonine-protei 99.9 1.9E-27 6.4E-32 242.9 15.0 167 427-599 40-210 (335)
219 1x8b_A WEE1HU, WEE1-like prote 99.9 1.6E-27 5.6E-32 237.6 14.2 164 427-599 10-199 (289)
220 2o6q_A Variable lymphocyte rec 99.9 1.6E-26 5.6E-31 228.4 21.2 204 20-232 16-220 (270)
221 1u59_A Tyrosine-protein kinase 99.9 1.6E-27 5.5E-32 237.8 14.1 168 428-599 9-182 (287)
222 2j7t_A Serine/threonine-protei 99.9 3.8E-28 1.3E-32 244.2 9.5 168 427-599 18-186 (302)
223 1mqb_A Ephrin type-A receptor 99.9 1.2E-27 4E-32 244.2 13.2 169 428-599 44-219 (333)
224 2y7j_A Phosphorylase B kinase 99.9 2.1E-27 7.1E-32 245.4 15.1 168 425-599 91-268 (365)
225 2qr7_A Ribosomal protein S6 ki 99.9 1.9E-27 6.5E-32 243.2 14.3 163 427-599 21-189 (342)
226 1zy4_A Serine/threonine-protei 99.9 1.3E-27 4.5E-32 240.0 13.0 169 427-599 5-199 (303)
227 3kmu_A ILK, integrin-linked ki 99.9 1.2E-27 4.2E-32 236.2 12.6 161 428-599 10-177 (271)
228 2pml_X PFPK7, Ser/Thr protein 99.9 1.5E-27 5.1E-32 245.0 13.6 165 427-599 30-219 (348)
229 3dtc_A Mitogen-activated prote 99.9 1.3E-27 4.5E-32 236.3 12.6 163 427-599 6-183 (271)
230 2ozo_A Tyrosine-protein kinase 99.9 1.4E-27 4.7E-32 262.7 14.1 161 435-599 343-508 (613)
231 3g33_A Cell division protein k 99.9 3.3E-27 1.1E-31 238.1 15.8 167 426-599 7-188 (308)
232 3lij_A Calcium/calmodulin depe 99.9 1.7E-27 5.9E-32 256.2 14.5 165 428-599 37-207 (494)
233 3a7i_A MST3 kinase, serine/thr 99.9 3.9E-27 1.3E-31 237.0 16.2 166 427-599 21-188 (303)
234 3pg1_A Mitogen-activated prote 99.9 1.4E-27 4.8E-32 246.6 13.2 173 420-599 14-202 (362)
235 3lxp_A Non-receptor tyrosine-p 99.9 3.8E-27 1.3E-31 238.8 16.1 165 430-599 33-206 (318)
236 3kfa_A Tyrosine-protein kinase 99.9 1.2E-27 4.2E-32 238.7 12.0 169 426-599 11-181 (288)
237 3g2f_A Bone morphogenetic prot 99.9 1.6E-27 5.5E-32 243.5 13.1 164 427-599 12-197 (336)
238 3brb_A Proto-oncogene tyrosine 99.9 1.7E-27 5.8E-32 240.8 13.0 171 426-599 32-218 (313)
239 3q5i_A Protein kinase; CDPK, m 99.9 3.5E-27 1.2E-31 254.5 16.2 166 427-599 35-217 (504)
240 3mwu_A Calmodulin-domain prote 99.9 1.8E-27 6.3E-32 255.5 13.9 166 427-599 21-192 (486)
241 3pls_A Macrophage-stimulating 99.9 1.5E-27 5.1E-32 239.3 12.3 168 429-599 22-197 (298)
242 3llt_A Serine/threonine kinase 99.9 1.5E-27 5.1E-32 246.2 12.5 173 417-599 24-228 (360)
243 3bhy_A Death-associated protei 99.9 3.4E-27 1.2E-31 234.9 14.4 165 428-599 5-180 (283)
244 3rfs_A Internalin B, repeat mo 99.9 3.3E-27 1.1E-31 233.6 14.3 221 3-266 26-247 (272)
245 4aaa_A Cyclin-dependent kinase 99.9 2.1E-27 7.3E-32 242.1 13.3 167 427-599 24-193 (331)
246 1cm8_A Phosphorylated MAP kina 99.9 2E-27 6.9E-32 245.6 13.2 162 427-599 24-194 (367)
247 3gxj_A TGF-beta receptor type- 99.9 3.7E-28 1.3E-32 244.3 7.3 166 428-599 3-181 (303)
248 2h34_A Serine/threonine-protei 99.9 3.2E-27 1.1E-31 238.3 14.2 168 427-599 33-204 (309)
249 2buj_A Serine/threonine-protei 99.9 1.4E-27 4.9E-32 241.8 11.6 170 427-599 28-212 (317)
250 2vgo_A Serine/threonine-protei 99.9 3.4E-27 1.2E-31 235.1 13.9 164 428-599 14-181 (284)
251 3ttj_A Mitogen-activated prote 99.9 1.6E-27 5.6E-32 253.6 12.3 163 427-599 61-232 (464)
252 3com_A Serine/threonine-protei 99.9 4.7E-27 1.6E-31 237.6 15.0 167 426-599 27-194 (314)
253 2yfx_A Tyrosine-protein kinase 99.9 1.2E-27 4E-32 243.6 10.6 170 427-599 29-214 (327)
254 2h6d_A 5'-AMP-activated protei 99.9 3.3E-27 1.1E-31 234.0 13.5 166 427-599 10-179 (276)
255 2wtk_C Serine/threonine-protei 99.9 6.5E-27 2.2E-31 235.5 15.8 169 427-599 4-180 (305)
256 1phk_A Phosphorylase kinase; g 99.9 5.5E-27 1.9E-31 235.2 15.1 167 426-599 15-192 (298)
257 2h8h_A Proto-oncogene tyrosine 99.9 7.9E-28 2.7E-32 260.8 9.7 168 426-599 265-433 (535)
258 2eva_A TAK1 kinase - TAB1 chim 99.9 2.9E-27 9.9E-32 238.4 12.9 162 428-599 8-172 (307)
259 3nyv_A Calmodulin-domain prote 99.9 1.8E-27 6E-32 255.7 12.0 165 428-599 26-197 (484)
260 3gbz_A Kinase, CMGC CDK; ssgci 99.9 1.4E-27 4.6E-32 243.3 10.6 167 426-599 32-206 (329)
261 1nxk_A MAP kinase-activated pr 99.9 3.1E-27 1.1E-31 246.9 13.5 161 428-599 61-232 (400)
262 2jam_A Calcium/calmodulin-depe 99.9 2.4E-27 8.4E-32 238.6 12.1 165 427-599 8-176 (304)
263 1fvr_A Tyrosine-protein kinase 99.9 4.4E-27 1.5E-31 239.3 14.0 166 428-599 25-210 (327)
264 3eqc_A Dual specificity mitoge 99.9 1.5E-27 5.1E-32 246.2 10.7 164 428-599 33-199 (360)
265 3cc6_A Protein tyrosine kinase 99.9 2.5E-27 8.4E-32 235.7 11.9 168 427-599 11-183 (281)
266 2vwi_A Serine/threonine-protei 99.9 1.2E-27 4.1E-32 240.5 9.5 172 425-599 12-195 (303)
267 2a19_B Interferon-induced, dou 99.9 2.9E-27 1E-31 235.3 12.1 163 427-599 10-190 (284)
268 2wqm_A Serine/threonine-protei 99.9 5.7E-27 1.9E-31 236.6 14.4 167 428-599 32-205 (310)
269 1t4h_A Serine/threonine-protei 99.9 8.5E-27 2.9E-31 232.9 15.1 163 429-599 27-199 (290)
270 3byv_A Rhoptry kinase; malaria 99.9 8.5E-28 2.9E-32 249.6 8.1 163 427-599 72-271 (377)
271 3eb0_A Putative uncharacterize 99.9 8.1E-27 2.8E-31 242.7 15.1 164 425-599 4-210 (383)
272 1xbb_A Tyrosine-protein kinase 99.9 3.4E-27 1.2E-31 236.0 11.4 168 427-599 15-189 (291)
273 1p9a_G Platelet glycoprotein I 99.9 4.4E-26 1.5E-30 227.4 19.5 202 16-254 6-208 (290)
274 1b6c_B TGF-B superfamily recep 99.9 1.9E-26 6.6E-31 236.0 16.7 169 425-599 39-220 (342)
275 2v62_A Serine/threonine-protei 99.9 3.3E-27 1.1E-31 242.1 10.8 167 428-599 37-229 (345)
276 3qyz_A Mitogen-activated prote 99.9 8.2E-27 2.8E-31 241.0 13.8 167 427-599 26-200 (364)
277 2r3i_A Cell division protein k 99.9 6.7E-27 2.3E-31 234.7 12.5 166 428-599 3-172 (299)
278 4azs_A Methyltransferase WBDD; 99.9 1.6E-27 5.4E-32 259.2 8.2 156 435-599 241-408 (569)
279 3nsz_A CK II alpha, casein kin 99.9 1.9E-26 6.3E-31 234.9 15.6 159 428-599 36-199 (330)
280 4fl3_A Tyrosine-protein kinase 99.9 5.5E-27 1.9E-31 258.6 12.5 161 434-599 375-541 (635)
281 2ycf_A Serine/threonine-protei 99.9 6E-27 2.1E-31 237.8 11.8 165 427-599 9-185 (322)
282 2i6l_A Mitogen-activated prote 99.9 1.2E-26 3.9E-31 235.1 13.8 167 427-599 10-193 (320)
283 3lm5_A Serine/threonine-protei 99.9 1.5E-26 5.1E-31 235.4 14.5 167 427-599 27-202 (327)
284 2x7f_A TRAF2 and NCK-interacti 99.9 3.4E-27 1.2E-31 239.9 9.7 170 424-599 20-198 (326)
285 1u46_A ACK-1, activated CDC42 99.9 6.7E-27 2.3E-31 233.7 11.5 168 428-599 18-193 (291)
286 3fme_A Dual specificity mitoge 99.9 6.7E-27 2.3E-31 233.5 11.4 166 427-599 6-178 (290)
287 2fst_X Mitogen-activated prote 99.9 5.1E-27 1.7E-31 242.4 10.8 162 427-599 28-198 (367)
288 3an0_A Dual specificity mitoge 99.9 6.9E-27 2.4E-31 239.2 11.4 166 427-599 50-222 (340)
289 2w5a_A Serine/threonine-protei 99.9 2.6E-27 9E-32 235.2 7.9 168 427-599 5-185 (279)
290 3ll6_A Cyclin G-associated kin 99.9 1.1E-26 3.9E-31 237.0 12.7 168 428-599 28-219 (337)
291 2xrw_A Mitogen-activated prote 99.9 1.3E-26 4.6E-31 239.9 13.4 163 427-599 24-195 (371)
292 2pzi_A Probable serine/threoni 99.9 1E-26 3.5E-31 259.7 13.2 159 428-599 80-246 (681)
293 2xwt_C Thyrotropin receptor; s 99.9 4.2E-26 1.4E-30 221.2 15.8 195 21-251 32-236 (239)
294 2b9h_A MAP kinase FUS3, mitoge 99.9 1.6E-26 5.5E-31 237.7 13.5 167 427-599 10-191 (353)
295 2j0j_A Focal adhesion kinase 1 99.9 1.2E-26 4E-31 256.9 13.2 168 427-599 389-561 (656)
296 2xwt_C Thyrotropin receptor; s 99.9 3.1E-26 1.1E-30 222.1 14.6 196 123-323 32-236 (239)
297 1byg_A CSK, protein (C-termina 99.9 6.5E-27 2.2E-31 232.3 9.8 162 427-599 20-183 (278)
298 4hgt_A Casein kinase I isoform 99.9 2.4E-26 8.3E-31 230.1 13.7 168 426-599 7-184 (296)
299 2jii_A Serine/threonine-protei 99.9 4.3E-27 1.5E-31 241.9 8.2 163 428-599 42-237 (352)
300 3cek_A Dual specificity protei 99.9 3.7E-27 1.3E-31 238.3 7.5 168 426-599 26-197 (313)
301 3goz_A Leucine-rich repeat-con 99.9 1.2E-27 4.3E-32 246.9 3.8 255 2-282 4-301 (362)
302 3q60_A ROP5B; pseudokinase, tr 99.9 1.1E-26 3.7E-31 240.7 10.5 163 428-599 62-260 (371)
303 3uzp_A CKI-delta, CKID, casein 99.9 4.2E-26 1.4E-30 228.5 14.4 167 427-599 8-184 (296)
304 1j1b_A Glycogen synthase kinas 99.9 3.4E-26 1.2E-30 240.7 13.6 161 428-599 54-225 (420)
305 4e7w_A Glycogen synthase kinas 99.9 2.7E-26 9.2E-31 239.5 12.5 162 428-599 40-210 (394)
306 3sv0_A Casein kinase I-like; t 99.9 6.5E-26 2.2E-30 241.5 15.4 167 427-599 6-182 (483)
307 4exu_A Mitogen-activated prote 99.9 3E-26 1E-30 237.3 12.4 161 427-599 41-210 (371)
308 4ay9_X Follicle-stimulating ho 99.9 2.4E-25 8.3E-30 228.5 19.0 218 23-271 12-232 (350)
309 2ca6_A RAN GTPase-activating p 99.9 3.8E-28 1.3E-32 253.1 -2.2 265 21-305 10-319 (386)
310 2wei_A Calmodulin-domain prote 99.9 4.1E-26 1.4E-30 227.6 12.6 166 427-599 21-192 (287)
311 3rgf_A Cyclin-dependent kinase 99.9 3.8E-26 1.3E-30 239.5 12.7 164 430-599 22-204 (405)
312 1blx_A Cyclin-dependent kinase 99.9 3.4E-26 1.2E-30 232.5 12.0 167 426-599 9-188 (326)
313 3kvw_A DYRK2, dual specificity 99.9 8.1E-26 2.8E-30 238.4 14.5 163 427-599 96-268 (429)
314 3coi_A Mitogen-activated prote 99.9 5E-26 1.7E-30 234.1 12.4 161 427-599 23-192 (353)
315 3goz_A Leucine-rich repeat-con 99.9 3.3E-27 1.1E-31 243.7 3.5 255 48-307 2-302 (362)
316 1wak_A Serine/threonine-protei 99.9 4.3E-26 1.5E-30 238.3 11.9 162 428-599 37-262 (397)
317 2y4i_B KSR2, HKSR2, kinase sup 99.9 9.4E-27 3.2E-31 235.9 6.5 168 426-599 31-203 (319)
318 3p23_A Serine/threonine-protei 99.9 3.8E-26 1.3E-30 240.8 10.9 165 428-599 24-195 (432)
319 2iwi_A Serine/threonine-protei 99.9 2.7E-26 9.3E-31 231.8 8.9 167 425-599 28-207 (312)
320 3aln_A Dual specificity mitoge 99.9 1.1E-25 3.6E-30 229.1 13.4 166 427-599 21-194 (327)
321 3e3p_A Protein kinase, putativ 99.9 1.5E-25 5.3E-30 231.0 14.5 173 421-599 16-200 (360)
322 4glp_A Monocyte differentiatio 99.9 7.2E-26 2.5E-30 228.5 11.3 201 122-327 91-308 (310)
323 3a99_A Proto-oncogene serine/t 99.9 6E-26 2.1E-30 230.2 10.5 166 426-599 41-217 (320)
324 1z57_A Dual specificity protei 99.9 1.7E-25 5.8E-30 228.4 13.7 163 427-599 13-203 (339)
325 4glp_A Monocyte differentiatio 99.9 1.9E-25 6.4E-30 225.4 13.1 225 73-303 64-308 (310)
326 2rio_A Serine/threonine-protei 99.9 1.5E-25 5E-30 236.9 12.5 164 429-599 16-201 (434)
327 3fhr_A MAP kinase-activated pr 99.9 2.5E-25 8.6E-30 227.1 13.6 162 427-599 27-198 (336)
328 1h6u_A Internalin H; cell adhe 99.9 4.8E-25 1.6E-29 222.0 15.0 196 118-328 37-232 (308)
329 2dyl_A Dual specificity mitoge 99.9 1.7E-25 5.8E-30 226.4 11.2 166 427-599 24-193 (318)
330 3qa8_A MGC80376 protein; kinas 99.9 8.6E-26 2.9E-30 246.0 9.4 167 427-599 13-192 (676)
331 1h6u_A Internalin H; cell adhe 99.9 1E-24 3.4E-29 219.7 16.1 209 24-279 23-231 (308)
332 2vx3_A Dual specificity tyrosi 99.9 7.2E-25 2.5E-29 227.9 14.7 165 427-599 53-227 (382)
333 2ast_B S-phase kinase-associat 99.9 7.7E-26 2.6E-30 231.0 7.1 254 21-310 48-314 (336)
334 2eu9_A Dual specificity protei 99.9 6.3E-25 2.2E-29 225.7 13.7 163 427-599 18-208 (355)
335 3uqc_A Probable conserved tran 99.9 7.6E-25 2.6E-29 218.2 13.6 143 428-576 31-177 (286)
336 3en9_A Glycoprotease, O-sialog 99.9 1.7E-25 5.8E-30 241.8 9.5 154 431-599 339-505 (540)
337 2ca6_A RAN GTPase-activating p 99.9 9.3E-27 3.2E-31 242.6 -1.2 241 68-329 27-319 (386)
338 4ay9_X Follicle-stimulating ho 99.9 2.9E-24 1E-28 220.5 16.9 236 3-251 16-256 (350)
339 3m19_A Variable lymphocyte rec 99.9 4.1E-24 1.4E-28 208.7 16.5 180 122-304 14-194 (251)
340 1q8y_A SR protein kinase; tran 99.9 5E-25 1.7E-29 228.3 10.5 163 427-599 18-204 (373)
341 2ast_B S-phase kinase-associat 99.9 7.2E-26 2.5E-30 231.2 3.9 251 74-332 48-312 (336)
342 3m19_A Variable lymphocyte rec 99.9 8E-24 2.8E-28 206.6 17.5 178 100-280 16-194 (251)
343 3ogk_B Coronatine-insensitive 99.9 1.2E-26 4.1E-31 255.6 -5.0 228 17-249 161-411 (592)
344 3m2w_A MAP kinase-activated pr 99.9 5.2E-24 1.8E-28 213.7 14.1 144 428-579 17-171 (299)
345 3ogk_B Coronatine-insensitive 99.9 1.1E-25 3.7E-30 248.0 -2.6 321 1-326 117-476 (592)
346 1zar_A RIO2 kinase; serine kin 99.9 1.7E-23 5.7E-28 207.5 11.7 141 423-579 85-243 (282)
347 3dzo_A Rhoptry kinase domain; 99.9 9.9E-24 3.4E-28 221.4 9.7 162 428-599 78-276 (413)
348 2o6s_A Variable lymphocyte rec 99.9 4.1E-22 1.4E-26 188.7 17.6 161 122-289 28-189 (208)
349 2o6s_A Variable lymphocyte rec 99.9 3.9E-22 1.3E-26 188.8 16.0 160 100-266 30-190 (208)
350 3cvr_A Invasion plasmid antige 99.9 2.3E-22 7.9E-27 217.3 16.3 145 100-264 102-253 (571)
351 2p1m_B Transport inhibitor res 99.9 8.4E-25 2.9E-29 241.0 -4.1 342 1-347 110-517 (594)
352 3cvr_A Invasion plasmid antige 99.9 3.1E-22 1.1E-26 216.3 15.4 147 146-312 100-253 (571)
353 1h6t_A Internalin B; cell adhe 99.9 3.2E-22 1.1E-26 199.6 12.9 189 22-255 26-214 (291)
354 1h6t_A Internalin B; cell adhe 99.9 8.1E-22 2.8E-26 196.7 13.5 172 119-327 43-214 (291)
355 1m9s_A Internalin B; cell inva 99.9 1.4E-21 4.9E-26 213.4 16.7 191 20-231 21-211 (605)
356 2v70_A SLIT-2, SLIT homolog 2 99.9 3.9E-22 1.3E-26 190.4 9.2 155 173-330 14-170 (220)
357 1m9s_A Internalin B; cell inva 99.9 2.3E-21 7.8E-26 211.9 15.8 188 2-211 27-214 (605)
358 2xot_A Amphoterin-induced prot 99.9 1.9E-21 6.5E-26 200.3 14.0 155 100-254 41-202 (361)
359 2v9t_B SLIT homolog 2 protein 99.9 7.7E-22 2.6E-26 188.4 9.6 153 174-329 15-168 (220)
360 2xot_A Amphoterin-induced prot 99.8 2.9E-21 9.9E-26 199.0 13.4 177 22-207 20-202 (361)
361 2p1m_B Transport inhibitor res 99.8 3.1E-23 1.1E-27 228.5 -2.5 321 1-327 135-520 (594)
362 2v9t_B SLIT homolog 2 protein 99.8 2.2E-20 7.7E-25 178.2 15.2 129 102-230 36-165 (220)
363 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-20 9.9E-25 177.4 15.3 113 118-230 53-166 (220)
364 1xeu_A Internalin C; cellular 99.8 6.8E-21 2.3E-25 187.0 10.4 167 100-280 21-187 (263)
365 3e6j_A Variable lymphocyte rec 99.8 5.2E-20 1.8E-24 176.8 16.2 133 122-254 40-172 (229)
366 1xeu_A Internalin C; cellular 99.8 2.4E-21 8.3E-26 190.2 6.2 170 120-303 17-186 (263)
367 4b8c_D Glucose-repressible alc 99.8 4.7E-21 1.6E-25 214.5 8.0 143 113-258 215-358 (727)
368 1dce_A Protein (RAB geranylger 99.8 5.4E-23 1.8E-27 223.4 -7.7 217 70-320 346-567 (567)
369 4b8c_D Glucose-repressible alc 99.8 3.6E-21 1.2E-25 215.5 6.6 227 73-330 173-408 (727)
370 3e6j_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 176.1 14.4 152 148-303 21-173 (229)
371 3sb4_A Hypothetical leucine ri 99.8 5.8E-21 2E-25 194.2 6.1 103 216-320 225-328 (329)
372 3sb4_A Hypothetical leucine ri 99.8 1E-20 3.4E-25 192.4 7.7 261 19-296 24-328 (329)
373 4ezg_A Putative uncharacterize 99.8 8.4E-20 2.9E-24 171.1 13.4 153 41-230 41-194 (197)
374 4fdw_A Leucine rich hypothetic 99.8 8.9E-19 3E-23 182.1 22.2 262 21-301 114-382 (401)
375 1zth_A RIO1 serine protein kin 99.8 1.3E-20 4.3E-25 184.5 7.5 138 430-579 49-220 (258)
376 1dce_A Protein (RAB geranylger 99.8 1.3E-22 4.6E-27 220.3 -7.2 120 148-271 443-566 (567)
377 1w8a_A SLIT protein; signaling 99.8 1.8E-20 6.1E-25 174.8 7.7 130 173-305 11-142 (192)
378 4ezg_A Putative uncharacterize 99.8 7.5E-20 2.6E-24 171.4 11.6 151 169-326 43-194 (197)
379 4fdw_A Leucine rich hypothetic 99.8 1.1E-18 3.9E-23 181.3 19.5 268 40-326 109-383 (401)
380 1w8a_A SLIT protein; signaling 99.8 5.1E-19 1.7E-23 165.0 11.9 132 197-330 11-143 (192)
381 2wfh_A SLIT homolog 2 protein 99.8 5.4E-19 1.9E-23 164.8 8.3 131 197-330 13-143 (193)
382 2ell_A Acidic leucine-rich nuc 99.7 5.8E-18 2E-22 154.2 9.8 107 122-230 24-133 (168)
383 2ell_A Acidic leucine-rich nuc 99.7 1.1E-17 3.9E-22 152.2 11.2 95 117-211 66-164 (168)
384 2o6r_A Variable lymphocyte rec 99.7 1.1E-17 3.7E-22 153.8 11.1 133 196-330 9-141 (177)
385 4gyi_A RIO2 kinase; protein ki 99.7 1.8E-18 6.1E-23 175.7 5.7 137 429-577 96-264 (397)
386 2wfh_A SLIT homolog 2 protein 99.7 2.9E-17 1E-21 153.0 11.7 129 173-304 13-141 (193)
387 2je0_A Acidic leucine-rich nuc 99.7 1.3E-17 4.5E-22 148.5 7.1 125 122-248 17-147 (149)
388 2je0_A Acidic leucine-rich nuc 99.7 2E-17 6.9E-22 147.3 7.9 125 171-296 18-147 (149)
389 4fs7_A Uncharacterized protein 99.7 3.3E-16 1.1E-20 163.1 18.1 297 8-323 59-376 (394)
390 1a9n_A U2A', U2A'; complex (nu 99.7 4.7E-17 1.6E-21 149.3 6.9 110 118-230 15-126 (176)
391 2o6r_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 142.3 13.8 127 125-254 10-137 (177)
392 1a9n_A U2A', U2A'; complex (nu 99.7 1.2E-16 4.1E-21 146.6 7.9 133 190-327 15-154 (176)
393 1ds9_A Outer arm dynein; leuci 99.6 1.3E-18 4.6E-23 163.0 -5.8 132 145-280 17-155 (198)
394 1ds9_A Outer arm dynein; leuci 99.6 2.1E-18 7.1E-23 161.7 -6.0 156 165-326 13-185 (198)
395 4fs7_A Uncharacterized protein 99.6 1.3E-14 4.3E-19 151.1 19.0 297 6-318 80-393 (394)
396 4gt6_A Cell surface protein; l 99.6 5.4E-14 1.9E-18 146.3 20.2 296 13-325 56-369 (394)
397 3g39_A Variable lymphocyte rec 99.6 4.2E-15 1.5E-19 135.3 10.0 106 196-303 11-116 (170)
398 2r9u_A Variable lymphocyte rec 99.6 6.6E-15 2.2E-19 134.5 9.8 104 197-302 15-118 (174)
399 3g39_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 134.0 9.2 111 218-331 10-120 (170)
400 4gt6_A Cell surface protein; l 99.5 3E-13 1E-17 140.7 20.2 300 7-325 74-390 (394)
401 2r9u_A Variable lymphocyte rec 99.5 1.7E-14 5.9E-19 131.7 9.2 110 219-331 14-123 (174)
402 3un9_A NLR family member X1; l 99.5 5.9E-16 2E-20 159.2 -6.2 185 122-326 72-283 (372)
403 2ifg_A High affinity nerve gro 99.5 7.1E-14 2.4E-18 142.8 9.1 132 198-331 12-146 (347)
404 3tm0_A Aminoglycoside 3'-phosp 99.4 3.9E-13 1.3E-17 131.5 11.2 145 425-576 11-212 (263)
405 3un9_A NLR family member X1; l 99.4 1.7E-15 5.8E-20 155.8 -7.2 187 43-230 71-283 (372)
406 4h09_A Hypothetical leucine ri 99.4 2.5E-11 8.5E-16 125.4 23.2 288 16-322 42-342 (379)
407 2ifg_A High affinity nerve gro 99.3 1.6E-12 5.4E-17 132.8 9.7 89 142-230 27-116 (347)
408 4h09_A Hypothetical leucine ri 99.3 6.9E-11 2.4E-15 122.1 20.2 286 8-312 57-355 (379)
409 1nd4_A Aminoglycoside 3'-phosp 99.3 5.5E-12 1.9E-16 123.0 10.6 131 435-577 26-214 (264)
410 3dxp_A Putative acyl-COA dehyd 99.1 9.2E-11 3.1E-15 120.2 10.5 142 432-577 42-248 (359)
411 2ra8_A Uncharacterized protein 99.0 4.1E-11 1.4E-15 122.1 2.6 84 240-324 251-341 (362)
412 2ra8_A Uncharacterized protein 99.0 2E-10 6.9E-15 116.9 4.9 135 191-327 169-321 (362)
413 3r70_A Aminoglycoside phosphot 98.8 2.3E-08 8E-13 100.4 11.9 136 429-577 38-237 (320)
414 3sg8_A APH(2'')-ID; antibiotic 98.7 2.9E-08 1E-12 98.9 9.8 136 433-577 25-223 (304)
415 3d1u_A Putative fructosamine-3 98.7 1.3E-07 4.3E-12 93.3 13.5 140 431-576 18-215 (288)
416 3tdw_A Gentamicin resistance p 98.6 1.8E-07 6.1E-12 93.2 12.0 136 433-577 24-224 (306)
417 1io0_A Tropomodulin; LRR prote 98.6 5.7E-09 2E-13 95.9 0.9 93 115-207 29-136 (185)
418 1io0_A Tropomodulin; LRR prote 98.6 5.7E-09 1.9E-13 95.9 0.4 124 37-182 29-163 (185)
419 4gkh_A Aminoglycoside 3'-phosp 98.6 3.8E-07 1.3E-11 89.1 12.2 136 434-577 30-223 (272)
420 3rw6_A Nuclear RNA export fact 98.5 7.5E-09 2.6E-13 100.0 -0.4 78 240-319 169-257 (267)
421 3rw6_A Nuclear RNA export fact 98.5 1.6E-08 5.5E-13 97.7 0.2 63 168-231 168-234 (267)
422 3ovc_A Hygromycin-B 4-O-kinase 98.5 6.3E-07 2.1E-11 91.4 11.9 141 431-577 44-243 (362)
423 3ats_A Putative uncharacterize 98.5 2.3E-07 7.9E-12 94.6 8.6 81 433-513 25-122 (357)
424 2olc_A MTR kinase, methylthior 98.2 3.9E-06 1.3E-10 86.8 11.0 75 433-509 35-120 (397)
425 2q83_A YTAA protein; 2635576, 98.1 8.5E-06 2.9E-10 82.2 10.8 138 434-576 38-251 (346)
426 3jr1_A Putative fructosamine-3 98.1 2.3E-05 7.7E-10 77.8 12.6 137 432-573 40-232 (312)
427 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7.1E-11 76.9 2.8 82 123-204 62-149 (176)
428 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.5E-11 77.7 1.6 84 217-300 61-150 (176)
429 3f7w_A Putative fructosamine-3 97.9 3.7E-05 1.3E-09 75.6 10.2 78 430-511 17-97 (288)
430 2pyw_A Uncharacterized protein 97.9 4.9E-05 1.7E-09 79.1 11.1 74 432-508 38-122 (420)
431 3csv_A Aminoglycoside phosphot 97.6 0.00043 1.5E-08 69.4 12.2 139 434-577 24-217 (333)
432 2ppq_A HSK, HK, homoserine kin 97.5 0.00061 2.1E-08 67.9 12.0 155 419-576 8-216 (322)
433 1pgv_A TMD-1, tropomodulin TMD 97.5 3E-05 1E-09 70.8 1.9 88 117-204 36-136 (197)
434 3dxq_A Choline/ethanolamine ki 97.5 0.00033 1.1E-08 69.2 9.7 128 431-576 21-201 (301)
435 1pgv_A TMD-1, tropomodulin TMD 97.5 2.6E-05 8.8E-10 71.2 1.3 44 42-86 39-83 (197)
436 1nw1_A Choline kinase (49.2 KD 97.5 0.00017 5.9E-09 75.0 7.6 73 433-511 78-159 (429)
437 3feg_A Choline/ethanolamine ki 97.4 0.00054 1.8E-08 69.7 10.3 138 434-576 56-253 (379)
438 1zyl_A Hypothetical protein YI 97.3 0.00072 2.5E-08 67.5 10.2 139 434-576 32-222 (328)
439 3rfe_A Platelet glycoprotein I 97.2 0.00049 1.7E-08 58.5 6.4 54 198-253 12-67 (130)
440 3rfe_A Platelet glycoprotein I 97.2 0.00043 1.5E-08 58.9 5.4 56 23-86 11-68 (130)
441 2qg7_A Ethanolamine kinase PV0 97.2 0.0011 3.9E-08 69.2 9.7 74 433-511 113-188 (458)
442 3c5i_A Choline kinase; choline 97.1 0.0011 3.6E-08 67.6 8.2 73 434-511 39-121 (369)
443 3i1a_A Spectinomycin phosphotr 96.9 0.0055 1.9E-07 61.4 11.4 32 546-577 205-236 (339)
444 3f2s_A CK, chetk-alpha, cholin 96.8 0.0025 8.7E-08 65.1 7.8 139 434-576 58-279 (401)
445 3mes_A Choline kinase; malaria 96.1 0.0059 2E-07 62.9 6.1 73 434-511 76-157 (424)
446 3g15_A CK, chetk-alpha, cholin 93.2 0.092 3.1E-06 53.8 5.8 29 548-576 245-279 (401)
447 2ks1_B Epidermal growth factor 88.3 0.36 1.2E-05 31.5 2.8 22 377-398 17-38 (44)
448 4ann_A ESSB; membrane protein, 85.9 1.7 5.9E-05 39.6 7.1 89 481-579 42-130 (215)
449 4ano_A ESSB; membrane protein, 85.8 2.9 0.0001 38.2 8.6 87 482-579 48-135 (219)
450 3cxl_A N-chimerin; SH2, RHO-GA 85.6 0.1 3.4E-06 54.5 -1.5 60 432-494 146-214 (463)
451 2jwa_A Receptor tyrosine-prote 82.5 0.6 2E-05 30.4 1.7 27 374-400 14-40 (44)
452 2l2t_A Receptor tyrosine-prote 81.8 0.67 2.3E-05 30.2 1.8 18 381-398 20-37 (44)
453 2lz0_A Uncharacterized protein 78.0 5 0.00017 31.6 6.2 47 30-82 6-52 (100)
454 2lz0_A Uncharacterized protein 72.2 8.7 0.0003 30.2 6.2 47 109-156 7-53 (100)
455 2k1k_A Ephrin type-A receptor 66.1 2.4 8.2E-05 26.7 1.3 19 373-391 12-30 (38)
456 3ls8_A Phosphatidylinositol 3- 46.4 2.4E+02 0.0081 29.9 13.3 46 524-576 454-501 (614)
457 1cja_A Protein (actin-fragmin 28.9 93 0.0032 30.2 6.3 133 435-577 76-237 (342)
458 2x6h_A GH13170P, VPS34, phosph 23.6 43 0.0015 36.2 3.1 44 526-576 530-575 (696)
459 3hhm_A Phosphatidylinositol-4, 21.4 1.1E+02 0.0038 34.9 6.0 60 510-576 899-961 (1091)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-49 Score=449.17 Aligned_cols=359 Identities=35% Similarity=0.575 Sum_probs=316.3
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCcc-ccCCCCCCEEeccCccCccc-CCCccc-------------
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNT-FGNLRNLKRLSLNYNYLTSS-TPKLNF------------- 65 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~~-~~~~~~------------- 65 (599)
|+|++|++++.+|..|.++++|++|+|++|++++.+|.. |.++++|++|+|++|+++.. +..+..
T Consensus 299 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp EECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS
T ss_pred EECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC
Confidence 578888888888888888888888888888888656654 88888888888888887733 221100
Q ss_pred ------ccccCC--CCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc
Q 042902 66 ------LSSLSN--CKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGS 137 (599)
Q Consensus 66 ------~~~~~~--l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~ 137 (599)
+..+.. +++|++|++++|.+++..|..+.+++ .|+.|++++|++++..|..|.++++|++|+|++|.+++.
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 457 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc
Confidence 011222 67788888888888888899998887 599999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCC-CCCccccCC
Q 042902 138 IPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLT-SIPSTLWNL 216 (599)
Q Consensus 138 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~l 216 (599)
+|..+..+++|++|+|++|++.+.+|..+..+++|++|+|++|++++..|.+|+.+++|++|+|++|+++ .+|..+..+
T Consensus 458 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 788899999
Q ss_pred CcccEEeecCCCccccCcccc-----------------------------------------------------------
Q 042902 217 KYILYLNLSSNSFTGPLPLEI----------------------------------------------------------- 237 (599)
Q Consensus 217 ~~L~~L~Ls~N~l~~~~~~~~----------------------------------------------------------- 237 (599)
++|++|++++|++++.+|..+
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 999999999999987766543
Q ss_pred -----------cccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCC
Q 042902 238 -----------GNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIP 306 (599)
Q Consensus 238 -----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 306 (599)
..+++|+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence 345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccceEEEcccccCcccCCCCCCCCCcccccccCCCCCcCCCCCCCCCCccc
Q 042902 307 ISLEKLLDLKYINVSFNKLEGEIPREGPFRNFSAESFKGNELLCGTPNLQVPPCRTR 363 (599)
Q Consensus 307 ~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~~ 363 (599)
..+..++.|++||+++|+++|.+|..+.+..++..++.||+.+||.|. ++|...
T Consensus 698 ~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~ 751 (768)
T 3rgz_A 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPS 751 (768)
T ss_dssp GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSC
T ss_pred hHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCC
Confidence 999999999999999999999999999999999999999999999873 367644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-45 Score=416.54 Aligned_cols=344 Identities=37% Similarity=0.571 Sum_probs=280.4
Q ss_pred CccCCCcCccCCCCCCcCC-CCCCEEEccCccccccCCccccCCCCCCEEeccCccCc-ccCCCcccccccCCCCCCcEE
Q 042902 1 LLLWGNNFSGTIPSFIFNA-SKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLT-SSTPKLNFLSSLSNCKYLKYL 78 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~~l~~L~~L 78 (599)
|+|++|++++.+|..++.. ++|++|+|++|++++..|..|+++++|++|+|++|+++ .++.. .+.++++|++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-----~l~~l~~L~~L 348 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-----TLLKMRGLKVL 348 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-----HHTTCTTCCEE
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-----HHhcCCCCCEE
Confidence 5788899999999998886 99999999999999999999999999999999999998 44432 47888889999
Q ss_pred EcccCcccccCChhhhcccc--------------------------cceEEEccCCcccccCCccccCCCCCCEEEccCC
Q 042902 79 SFSNNSLDGILPRAIGNLSQ--------------------------SMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGN 132 (599)
Q Consensus 79 ~Ls~N~i~~~~~~~~~~l~~--------------------------~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N 132 (599)
++++|.+++..|..+..++. .++.|++++|.+++..|..|.++++|++|+|++|
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 428 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC
Confidence 99999988888877776542 3556666666666677777777888888888888
Q ss_pred cCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCC-CCCc
Q 042902 133 KLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLT-SIPS 211 (599)
Q Consensus 133 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~ 211 (599)
.+++.+|..|..+++|++|+|++|.+.+.+|..+..+++|++|++++|++++..|..|..+++|++|+|++|+++ .+|.
T Consensus 429 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 887777878888888888888888888788888888888888888888888888888888888888888888888 6677
Q ss_pred cccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCcc-------------------------------
Q 042902 212 TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTT------------------------------- 260 (599)
Q Consensus 212 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------- 260 (599)
++..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++.+|..
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 8888888888888888888888888888888888888888887665543
Q ss_pred ---------------------------------------ccCcccccccccccccccccCcccccCCCCcccccCCCCcc
Q 042902 261 ---------------------------------------IGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNI 301 (599)
Q Consensus 261 ---------------------------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 301 (599)
++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 33356788888888888888888888888888888888888
Q ss_pred cccCCchhhccccceEEEcccccCcccCCCC-CCCCCcccccccCCCCC
Q 042902 302 SGAIPISLEKLLDLKYINVSFNKLEGEIPRE-GPFRNFSAESFKGNELL 349 (599)
Q Consensus 302 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~~~ 349 (599)
+|.+|..+..+++|+.|||++|+++|.+|.. +.+..+...++.+|+..
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 8888888888888888888888888888864 44566677777777653
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=377.60 Aligned_cols=343 Identities=22% Similarity=0.235 Sum_probs=309.7
Q ss_pred ccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcc
Q 042902 2 LLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFS 81 (599)
Q Consensus 2 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 81 (599)
+.++++++ .+|..+. ++++.|+|++|+|+++.+..|.++++|++|+|++|.|+.+.+. .|.++++|++|+|+
T Consensus 17 ~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 17 LCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-----AFNNLFNLRTLGLR 88 (477)
T ss_dssp ECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECC
T ss_pred EeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-----hhhCCccCCEEECC
Confidence 34567777 6677664 5899999999999999999999999999999999999998765 69999999999999
Q ss_pred cCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEccccccccc
Q 042902 82 NNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGS 161 (599)
Q Consensus 82 ~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 161 (599)
+|+|+.+.+..|.+++ .|+.|++++|.+.+..+..|.++++|++|+|++|.++++.+..|.++++|++|+|++|++++.
T Consensus 89 ~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SSCCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCcCCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 9999988888888887 599999999999999999999999999999999999999999999999999999999999988
Q ss_pred CChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCC-CCCccccCCCcccEEeecCCCccccCccccccc
Q 042902 162 IPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLT-SIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNL 240 (599)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 240 (599)
.+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+. .+|.......+|++|++++|.+++..+..|..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 8888999999999999999999998899999999999999998765 677777777799999999999997777789999
Q ss_pred ccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEc
Q 042902 241 RVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINV 320 (599)
Q Consensus 241 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 320 (599)
++|+.|+|++|.+++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 99999999999999998899999999999999999999999999999999999999999999888888999999999999
Q ss_pred ccccCcccCCCCCCCCCcccccccCCCCCcCCC
Q 042902 321 SFNKLEGEIPREGPFRNFSAESFKGNELLCGTP 353 (599)
Q Consensus 321 ~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 353 (599)
++|++.|.++....+.......+.++...|..|
T Consensus 328 ~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 328 DSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred cCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 999999887543222233344566777788766
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-43 Score=387.33 Aligned_cols=347 Identities=23% Similarity=0.216 Sum_probs=253.0
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..+..|.++++|++|+|++|+|+++.|.+|.++++|++|+|++|+++.+.+. .|+++++|++|+|
T Consensus 37 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~L 111 (606)
T 3vq2_A 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-----SFSGLTSLENLVA 111 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-----SSTTCTTCCEEEC
T ss_pred EECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-----hcCCcccCCEEEc
Confidence 46777777777777777777777777777777777777777777777777777777776554 4677777777777
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccc-cCCccccCCCCCCEEEccCCcCCcccCccc-----------------
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISG-SIPEEISNLTNLTTIYLGGNKLNGSIPIAL----------------- 142 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------- 142 (599)
++|.++++.+..|.+++ .|+.|++++|.+.+ .+|..|+++++|++|+|++|++++..+..|
T Consensus 112 ~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 77777766666666665 37777777777665 346667777777777776666654433221
Q ss_pred --------------------------------------------------------------------------------
Q 042902 143 -------------------------------------------------------------------------------- 142 (599)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (599)
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence
Q ss_pred ----------------------------------------------------------------------------cCCC
Q 042902 143 ----------------------------------------------------------------------------DKLQ 146 (599)
Q Consensus 143 ----------------------------------------------------------------------------~~l~ 146 (599)
..++
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred cccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence 1233
Q ss_pred CCCEEEccccccccc--CChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCC--ccccCCCcccEE
Q 042902 147 KLQLLSLEDNQLEGS--IPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIP--STLWNLKYILYL 222 (599)
Q Consensus 147 ~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L 222 (599)
+|++|++++|.+++. .|..+..+++|++|++++|.+++ .|..|..+++|+.|++++|.++.++ ..+..+++|++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 444455555555433 25566666667777777776664 3466777788888888888887664 366778888888
Q ss_pred eecCCCccccCcccccccccccEEEccCCccCC-CCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcc
Q 042902 223 NLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSG-FIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNI 301 (599)
Q Consensus 223 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 301 (599)
++++|.+++..|..|.++++|++|++++|.+++ .+|..|+.+++|++|+|++|++++..|..|..+++|+.|+|++|++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 888888888888888888888888888888887 4678888888889999999988888888888888999999999998
Q ss_pred cccCCchhhccccceEEEcccccCcccCCCCCCCC-CcccccccCCCCCcCCCC
Q 042902 302 SGAIPISLEKLLDLKYINVSFNKLEGEIPREGPFR-NFSAESFKGNELLCGTPN 354 (599)
Q Consensus 302 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~-~~~~~~~~~n~~~c~~~~ 354 (599)
++..|..|..+++|+.|++++|+++..++....+. .+...++.+|++.|+++.
T Consensus 510 ~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 88888888888889999999999885443333343 467778889999888763
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=398.28 Aligned_cols=345 Identities=22% Similarity=0.253 Sum_probs=211.7
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCcc--ccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEE
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNT--FGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYL 78 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L 78 (599)
|+|++|++++..|..|.++++|++|+|++|++++..|.. |+++++|++|+|++|.+++..+. ..|+++++|++|
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~----~~~~~L~~L~~L 153 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH----PSFGKLNSLKSI 153 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC----GGGGTCSSCCEE
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc----hhHhhCCCCCEE
Confidence 355666666666666666666666666666665533333 56666666666666666554432 246667777777
Q ss_pred EcccCcccccCChhhhccc-cc------------------------------ceEEEccCCcccccCCcccc--------
Q 042902 79 SFSNNSLDGILPRAIGNLS-QS------------------------------MEVFFMFNCNISGSIPEEIS-------- 119 (599)
Q Consensus 79 ~Ls~N~i~~~~~~~~~~l~-~~------------------------------l~~l~l~~n~i~~~~~~~~~-------- 119 (599)
+|++|.+++..+..+..+. .. ++.|++++|.+++..+..+.
T Consensus 154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 7777776665555554330 01 33333333332222221111
Q ss_pred ----------------------------C--CCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcC
Q 042902 120 ----------------------------N--LTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRL 169 (599)
Q Consensus 120 ----------------------------~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 169 (599)
+ .++|++|+|++|.+.+..+..|..+++|+.|+|++|.+.+..|..|..+
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 313 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL 313 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC
Confidence 0 1345566666666665556666666666666666666666666666666
Q ss_pred CCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCccccCc--------------
Q 042902 170 AALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLP-------------- 234 (599)
Q Consensus 170 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~-------------- 234 (599)
++|++|+|++|++++..+..|.++++|+.|++++|.++.++. .+..+++|++|+|++|.+++...
T Consensus 314 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKL 393 (844)
T ss_dssp SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCC
T ss_pred CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCc
Confidence 666666666666666556666666666666666666665543 34455555555555555543210
Q ss_pred --------------------------ccccccccccEEEccCCccCC------------------------------CCC
Q 042902 235 --------------------------LEIGNLRVLVQIDLSMNNFSG------------------------------FIP 258 (599)
Q Consensus 235 --------------------------~~~~~l~~L~~L~Ls~N~l~~------------------------------~~~ 258 (599)
..+.++++|+.|+|++|++++ ..+
T Consensus 394 ~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 394 VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp CCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred ccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch
Confidence 001234455555555555542 233
Q ss_pred ccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCCCCCCCc
Q 042902 259 TTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREGPFRNF 338 (599)
Q Consensus 259 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~ 338 (599)
..|.++++|+.|+|++|++++.+|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L 549 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL 549 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence 4577788888888888888888888888888888888888888877666665 78888888888888877753 5677
Q ss_pred ccccccCCCCCcCCC
Q 042902 339 SAESFKGNELLCGTP 353 (599)
Q Consensus 339 ~~~~~~~n~~~c~~~ 353 (599)
...++.+||+.|+|+
T Consensus 550 ~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 550 SVLDITHNKFICECE 564 (844)
T ss_dssp CEEEEEEECCCCSSS
T ss_pred CEEEecCCCcccccc
Confidence 888899999999876
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-42 Score=371.53 Aligned_cols=342 Identities=20% Similarity=0.244 Sum_probs=272.0
Q ss_pred cCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCc-ccCCCcccccccCCCCCCcEEEcc
Q 042902 3 LWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLT-SSTPKLNFLSSLSNCKYLKYLSFS 81 (599)
Q Consensus 3 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~~l~~L~~L~Ls 81 (599)
.++++++ .+|. +. ++|++|+|++|+|+++.|..|+++++|++|+|++|.+. .+++. .|.++++|++|+|+
T Consensus 17 c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-----~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 17 CINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-----TFRGLSSLIILKLD 87 (455)
T ss_dssp CCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-----TTTTCTTCCEEECT
T ss_pred cCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc-----cccccccCCEEeCC
Confidence 3455555 4555 32 67888888888888888888888888888888888876 34443 57888888888888
Q ss_pred cCcccccCChhhhcccccceEEEccCCcccccCCcc--ccCCCCCCEEEccCCcCCcccCcc-ccCCCCCCEEEcccccc
Q 042902 82 NNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEE--ISNLTNLTTIYLGGNKLNGSIPIA-LDKLQKLQLLSLEDNQL 158 (599)
Q Consensus 82 ~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l 158 (599)
+|.+++..|.+|.+++ .|+.|++++|++++..+.. |.++++|++|+|++|.+++..|.. |.++++|++|+|++|++
T Consensus 88 ~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCT-TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcc-cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 8888888888888886 4888888888887754444 888888888888888888776765 78888888888888888
Q ss_pred cccCChhhhcC--CCCcEEEeeCCccCCCCCccc--------CCCCCCcEeecCCCCCCC-CCcc---------------
Q 042902 159 EGSIPDDLCRL--AALFLLDLGGNKLSGFVPACF--------GNLTSLRNLYLGSNQLTS-IPST--------------- 212 (599)
Q Consensus 159 ~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~-ip~~--------------- 212 (599)
.+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.++. +|..
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 88777777766 567777777777776554432 245667777777776652 1111
Q ss_pred ----------------------cc--CCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccc
Q 042902 213 ----------------------LW--NLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQ 268 (599)
Q Consensus 213 ----------------------~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 268 (599)
+. ..++|+.|++++|.+++..|..|..+++|+.|+|++|.+++..|..|.++++|+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 11 125799999999999988899999999999999999999988888999999999
Q ss_pred ccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCC-CCCCCcccccccCCC
Q 042902 269 YLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPRE-GPFRNFSAESFKGNE 347 (599)
Q Consensus 269 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 347 (599)
+|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|++++|++++.++.. ..+..+...++.+|+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 9999999999888999999999999999999999888999999999999999999999766543 456778888899999
Q ss_pred CCcCCCC
Q 042902 348 LLCGTPN 354 (599)
Q Consensus 348 ~~c~~~~ 354 (599)
+.|.+|.
T Consensus 407 l~~~~~~ 413 (455)
T 3v47_A 407 WDCSCPR 413 (455)
T ss_dssp BCCCTTT
T ss_pred cccCCCc
Confidence 9998873
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.2e-43 Score=372.83 Aligned_cols=327 Identities=21% Similarity=0.241 Sum_probs=278.1
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCcccc-ccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEE
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFY-GFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLS 79 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~ 79 (599)
|+|++|++++..|..|.++++|++|+|++|.+. .+.+.+|.++++|++|+|++|+++.+.+. .|+++++|++|+
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~ 109 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG-----AFNGLANLEVLT 109 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT-----TTTTCTTCCEEE
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh-----hccCcccCCEEe
Confidence 689999999999999999999999999999997 55678899999999999999999988765 689999999999
Q ss_pred cccCcccccCChh--hhcccccceEEEccCCcccccCCcc-ccCCCCCCEEEccCCcCCcccCccccCC--CCCCEEEcc
Q 042902 80 FSNNSLDGILPRA--IGNLSQSMEVFFMFNCNISGSIPEE-ISNLTNLTTIYLGGNKLNGSIPIALDKL--QKLQLLSLE 154 (599)
Q Consensus 80 Ls~N~i~~~~~~~--~~~l~~~l~~l~l~~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~ 154 (599)
|++|.+++..+.. |..++ .|+.|++++|++++..|.. |.++++|++|+|++|.+++..+..+..+ .+|+.|+++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCT-TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcc-cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 9999999755444 88887 5999999999999988876 8999999999999999999888877765 455555555
Q ss_pred cccccccCChh--------hhcCCCCcEEEeeCCccCCCCCc-------------------------------------c
Q 042902 155 DNQLEGSIPDD--------LCRLAALFLLDLGGNKLSGFVPA-------------------------------------C 189 (599)
Q Consensus 155 ~N~l~~~~~~~--------~~~l~~L~~L~Ls~N~l~~~~~~-------------------------------------~ 189 (599)
+|.+.+..+.. +..+++|++|++++|++++..|. .
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 55555433322 12334555555555554432222 1
Q ss_pred cCC--CCCCcEeecCCCCCCCC-CccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccc
Q 042902 190 FGN--LTSLRNLYLGSNQLTSI-PSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKD 266 (599)
Q Consensus 190 ~~~--l~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 266 (599)
+.. .++|++|++++|.++.+ |..+..+++|++|++++|.+++..|..|.++++|+.|+|++|.+++..|..|+.+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 222 26899999999999965 667889999999999999999999999999999999999999999998999999999
Q ss_pred ccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCCC
Q 042902 267 LQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREG 333 (599)
Q Consensus 267 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~ 333 (599)
|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|+++|.+|...
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 9999999999999999999999999999999999998888888999999999999999999998643
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-41 Score=377.31 Aligned_cols=343 Identities=20% Similarity=0.199 Sum_probs=306.2
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..|..|.++++|++|+|++|+++++.|++|+++++|++|+|++|+++.+.+. .|+++++|++|++
T Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L 112 (606)
T 3t6q_A 38 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-----ALSGPKALKHLFF 112 (606)
T ss_dssp EECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-----TTSSCTTCCEEEC
T ss_pred EEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-----hhcccccccEeec
Confidence 68999999999999999999999999999999999999999999999999999999988765 6899999999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCC--EEEcccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQ--LLSLEDNQL 158 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~--~L~L~~N~l 158 (599)
++|.|+++.+..|.+++ .|+.|++++|.+.+..+..+.++++|++|+|++|.+++..+..|..+++|+ .|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 99999988888898887 499999999999987666666799999999999999988888999999999 899999999
Q ss_pred cccCChhhhcC---------------------------------------------------CCCcEEEeeCCccCCCCC
Q 042902 159 EGSIPDDLCRL---------------------------------------------------AALFLLDLGGNKLSGFVP 187 (599)
Q Consensus 159 ~~~~~~~~~~l---------------------------------------------------~~L~~L~Ls~N~l~~~~~ 187 (599)
.+..|..|... .+|+.|++++|.++++.+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 98777665431 167889999999999888
Q ss_pred cccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCC-ccccCccc
Q 042902 188 ACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIP-TTIGDLKD 266 (599)
Q Consensus 188 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 266 (599)
..|+.+++|++|++++|+++.+|..+..+++|++|++++|.+++..|..+.++++|+.|++++|.+.+.+| ..+..+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 88999999999999999999999999999999999999999998888999999999999999999986554 45899999
Q ss_pred ccccccccccccccC--cccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCC--CCCCCccccc
Q 042902 267 LQYLFLEYNRLQGSI--PDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPRE--GPFRNFSAES 342 (599)
Q Consensus 267 L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~--~~~~~~~~~~ 342 (599)
|++|++++|++++.. +..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..|.. ..+..+....
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 999999999998776 778999999999999999999899999999999999999999998876653 4566777777
Q ss_pred ccCCCCC
Q 042902 343 FKGNELL 349 (599)
Q Consensus 343 ~~~n~~~ 349 (599)
+.+|...
T Consensus 432 l~~n~l~ 438 (606)
T 3t6q_A 432 LSHSLLD 438 (606)
T ss_dssp CTTCCCB
T ss_pred CCCCccC
Confidence 8777653
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-42 Score=378.68 Aligned_cols=348 Identities=22% Similarity=0.221 Sum_probs=244.4
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..+..|.++++|++|+|++|+++++.+++|+++++|++|+|++|+++.+++. .|+++++|++|++
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 107 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQKLVA 107 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-----TTTTCTTCCEEEC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-----hhcCccccccccc
Confidence 57888999888888888899999999999999888888889999999999999988888764 5788888888888
Q ss_pred ccCcccccCChhhhcccccceEEEccCCccccc-CCccccCCCCCCEEEccCCcCCcccCccccCCCCC----CEEEccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGS-IPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKL----QLLSLED 155 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----~~L~L~~ 155 (599)
++|+++++.+..|++++ .|+.|++++|.+++. .|..|.++++|++|++++|.+++..+..|..+++| +.|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccc-cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 88888877666677776 488888888888763 57788888888888888888776655555544444 4455555
Q ss_pred ccccccCC------------------------------------------------------------------------
Q 042902 156 NQLEGSIP------------------------------------------------------------------------ 163 (599)
Q Consensus 156 N~l~~~~~------------------------------------------------------------------------ 163 (599)
|.+.+..|
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 44433222
Q ss_pred ---------hhhhcCCCCcEEEeeCCccCCCC------------------------------------------------
Q 042902 164 ---------DDLCRLAALFLLDLGGNKLSGFV------------------------------------------------ 186 (599)
Q Consensus 164 ---------~~~~~l~~L~~L~Ls~N~l~~~~------------------------------------------------ 186 (599)
..+..+++|+.|++++|.++++.
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 22222334444444444433211
Q ss_pred -------------------CcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCc-ccccccccccEE
Q 042902 187 -------------------PACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLP-LEIGNLRVLVQI 246 (599)
Q Consensus 187 -------------------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L 246 (599)
+..+..+++|++|++++|.++.+|..+..+++|++|++++|.+++..+ ..|..+++|+.|
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 222333444444444444444444445556666666666666665544 456777777777
Q ss_pred EccCCccCCCCCccccCccccccccccccccc-ccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccC
Q 042902 247 DLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQ-GSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKL 325 (599)
Q Consensus 247 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l 325 (599)
++++|.+++..|..|.++++|++|++++|+++ +.+|..+..+++|+.|++++|++++..|..|..+++|+.|++++|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 77777777777777777888888888888876 46777788888888888888888877788888888888888888888
Q ss_pred cccCCCC-CCCCCcccccccCCCCCcCCCC
Q 042902 326 EGEIPRE-GPFRNFSAESFKGNELLCGTPN 354 (599)
Q Consensus 326 ~~~~p~~-~~~~~~~~~~~~~n~~~c~~~~ 354 (599)
++.+|.. ..+..+...++.+|++.|.+|.
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8766643 4556677777888888877663
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-42 Score=381.91 Aligned_cols=343 Identities=17% Similarity=0.240 Sum_probs=301.2
Q ss_pred CccCCCcCccC-----------------CCCCCc--CCCCCCEEEccCccccccCCccccCCCCCCEEeccCcc-Ccc--
Q 042902 1 LLLWGNNFSGT-----------------IPSFIF--NASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNY-LTS-- 58 (599)
Q Consensus 1 L~L~~n~~~~~-----------------~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~-- 58 (599)
|+|++|++++. +|..+. ++++|++|+|++|++.+.+|..|+++++|++|+|++|+ ++.
T Consensus 211 L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~ 290 (636)
T 4eco_A 211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290 (636)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH
T ss_pred EECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc
Confidence 68999999986 999999 99999999999999999999999999999999999998 885
Q ss_pred cCCCcccccccCCCCCCcEEEcccCcccccCCh--hhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCc
Q 042902 59 STPKLNFLSSLSNCKYLKYLSFSNNSLDGILPR--AIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNG 136 (599)
Q Consensus 59 ~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~--~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 136 (599)
++..+..+..+..+++|++|+|++|+++ .+|. .+.+++ .|+.|++++|++++.+| .|.++++|++|+|++|+++
T Consensus 291 lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~- 366 (636)
T 4eco_A 291 LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT- 366 (636)
T ss_dssp HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-
T ss_pred chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-
Confidence 4443211112234599999999999999 6777 899997 59999999999998899 9999999999999999999
Q ss_pred ccCccccCCCC-CCEEEcccccccccCChhhhcCC--CCcEEEeeCCccCCCCCcccC-------CCCCCcEeecCCCCC
Q 042902 137 SIPIALDKLQK-LQLLSLEDNQLEGSIPDDLCRLA--ALFLLDLGGNKLSGFVPACFG-------NLTSLRNLYLGSNQL 206 (599)
Q Consensus 137 ~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l 206 (599)
.+|..+..+++ |++|+|++|.++ .+|..+..+. +|++|++++|++++..|..|. .+++|++|+|++|++
T Consensus 367 ~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 367 EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 67788999999 999999999999 6788777755 899999999999999999888 888999999999999
Q ss_pred CCCCcccc-CCCcccEEeecCCCccccCcccccccc-------cccEEEccCCccCCCCCcccc--Cccccccccccccc
Q 042902 207 TSIPSTLW-NLKYILYLNLSSNSFTGPLPLEIGNLR-------VLVQIDLSMNNFSGFIPTTIG--DLKDLQYLFLEYNR 276 (599)
Q Consensus 207 ~~ip~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~ 276 (599)
+.+|..++ .+++|++|+|++|+++.+.+..+.... +|+.|+|++|+++ .+|..+. .+++|++|+|++|+
T Consensus 446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 99998655 589999999999999955544554433 9999999999999 5677776 99999999999999
Q ss_pred ccccCcccccCCCCcccccC------CCCcccccCCchhhccccceEEEcccccCcccCCCCCCCCCcccccccCCCCCc
Q 042902 277 LQGSIPDSIGGLIDLKSLDL------SNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREGPFRNFSAESFKGNELLC 350 (599)
Q Consensus 277 l~~~~~~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c 350 (599)
+++ +|..+..+++|+.|+| ++|++.+.+|..+..+++|+.|++++|++ +.+|... ...+...++.+|++.|
T Consensus 525 l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNIS 601 (636)
T ss_dssp CSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCE
T ss_pred CCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCcc
Confidence 997 8899999999999999 56889999999999999999999999999 6777653 3778888999998877
Q ss_pred CC
Q 042902 351 GT 352 (599)
Q Consensus 351 ~~ 352 (599)
-.
T Consensus 602 ~~ 603 (636)
T 4eco_A 602 ID 603 (636)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-42 Score=381.79 Aligned_cols=334 Identities=24% Similarity=0.287 Sum_probs=264.6
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCc--------------------------------------------------
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMN-------------------------------------------------- 30 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-------------------------------------------------- 30 (599)
|+|++|+++|.+|..+.++++|++|+|++|
T Consensus 86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l 165 (636)
T 4eco_A 86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165 (636)
T ss_dssp EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence 578899999999999999999999999888
Q ss_pred ----------------------------cccccCCccccCCCCCCEEeccCccCcc------------------cCCCcc
Q 042902 31 ----------------------------SFYGFIPNTFGNLRNLKRLSLNYNYLTS------------------STPKLN 64 (599)
Q Consensus 31 ----------------------------~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~~~ 64 (599)
++++ +|.+|+++++|++|+|++|++++ +|.
T Consensus 166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~--- 241 (636)
T 4eco_A 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE--- 241 (636)
T ss_dssp HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS---
T ss_pred hhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch---
Confidence 4445 67788999999999999999988 554
Q ss_pred cccccC--CCCCCcEEEcccCcccccCChhhhcccccceEEEccCCc-ccc-cCCccccCC------CCCCEEEccCCcC
Q 042902 65 FLSSLS--NCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCN-ISG-SIPEEISNL------TNLTTIYLGGNKL 134 (599)
Q Consensus 65 ~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~-i~~-~~~~~~~~l------~~L~~L~L~~N~l 134 (599)
.++ ++++|++|+|++|.+.+.+|..|.+++ .|+.|++++|+ +++ .+|..++++ ++|++|+|++|.+
T Consensus 242 ---~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 242 ---DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp ---CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred ---hhhhcccCCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 466 888999999999998888888888887 48899999998 887 788887776 8899999999998
Q ss_pred CcccCc--cccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCC-CcEeecCCCCCCCCCc
Q 042902 135 NGSIPI--ALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTS-LRNLYLGSNQLTSIPS 211 (599)
Q Consensus 135 ~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~ip~ 211 (599)
+ .+|. .+..+++|++|+|++|++++.+| .|..+++|++|+|++|+++ .+|..|..+++ |++|++++|.++.+|.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccch
Confidence 8 6676 78888999999999999887788 8888888889999998888 56777888888 8889999888888888
Q ss_pred cccCCC--cccEEeecCCCccccCccccc-------ccccccEEEccCCccCCCCCccccCcccccccccccccccccCc
Q 042902 212 TLWNLK--YILYLNLSSNSFTGPLPLEIG-------NLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIP 282 (599)
Q Consensus 212 ~~~~l~--~L~~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 282 (599)
.+..++ +|++|++++|.+++..|..|. .+++|+.|+|++|.++.+.+..+..+++|++|+|++|+++...+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 776544 788888888888888887777 67788888888888886555556667888888888888874444
Q ss_pred ccccCCC-------CcccccCCCCcccccCCchhh--ccccceEEEcccccCcccCCC-CCCCCCcccccccCCC
Q 042902 283 DSIGGLI-------DLKSLDLSNNNISGAIPISLE--KLLDLKYINVSFNKLEGEIPR-EGPFRNFSAESFKGNE 347 (599)
Q Consensus 283 ~~~~~l~-------~L~~L~L~~N~l~~~~p~~~~--~l~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~ 347 (599)
..+.... +|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|. ...+..+....+.+|+
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 4444332 7888888888887 5666665 77788888888888877 443 3445566666665443
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.4e-41 Score=366.80 Aligned_cols=335 Identities=22% Similarity=0.211 Sum_probs=251.6
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
+++++|++++ +|..+. ++|++|+|++|+|+++.+.+|.++++|++|+|++|+|+++++. .|.++++|++|||
T Consensus 36 l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~L 107 (562)
T 3a79_B 36 VDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-----VFLFNQDLEYLDV 107 (562)
T ss_dssp EECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-----TTTTCTTCCEEEC
T ss_pred EEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-----HhCCCCCCCEEEC
Confidence 4677777774 666554 6777777777777777777777777777777777777777654 5777777777777
Q ss_pred ccCcccccCChhhhcccccceEEEccCCccccc-CCccccCCCCCCEEEccCCcCCcccCccccCCCCC--CEEEccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGS-IPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKL--QLLSLEDNQ 157 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~ 157 (599)
++|+|+.+.+. .++ .|+.|++++|++++. .|..|.++++|++|+|++|.+++. .+..+++| ++|+|++|.
T Consensus 108 s~N~l~~lp~~---~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 108 SHNRLQNISCC---PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTSCCCEECSC---CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCcCCccCcc---ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 77777754333 444 477777777777764 356777777777777777777653 34444444 777777777
Q ss_pred c--cccCChhhhcCC-----------------------------------------------------------------
Q 042902 158 L--EGSIPDDLCRLA----------------------------------------------------------------- 170 (599)
Q Consensus 158 l--~~~~~~~~~~l~----------------------------------------------------------------- 170 (599)
+ .+..|..+..+.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 6 444444444322
Q ss_pred ----------------CCcEEEeeCCccCCCCCccc--------------------------------------------
Q 042902 171 ----------------ALFLLDLGGNKLSGFVPACF-------------------------------------------- 190 (599)
Q Consensus 171 ----------------~L~~L~Ls~N~l~~~~~~~~-------------------------------------------- 190 (599)
+|++|++++|.+++..|..+
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 56667777777765555443
Q ss_pred ---------CCCCCCcEeecCCCCCCC-CCccccCCCcccEEeecCCCccccC--cccccccccccEEEccCCccCC-CC
Q 042902 191 ---------GNLTSLRNLYLGSNQLTS-IPSTLWNLKYILYLNLSSNSFTGPL--PLEIGNLRVLVQIDLSMNNFSG-FI 257 (599)
Q Consensus 191 ---------~~l~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~-~~ 257 (599)
..+++|++|++++|.++. +|..+..+++|++|++++|++++.. |..|.++++|+.|+|++|.+++ ..
T Consensus 341 n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred CCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 677889999999999996 6778889999999999999998743 4678899999999999999998 44
Q ss_pred CccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCC-CCCCC
Q 042902 258 PTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPR-EGPFR 336 (599)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~ 336 (599)
+..+..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++..++. ...+.
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCT
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCC
Confidence 45688899999999999999877766554 68999999999999 6777777999999999999999954444 45667
Q ss_pred CcccccccCCCCCcCCC
Q 042902 337 NFSAESFKGNELLCGTP 353 (599)
Q Consensus 337 ~~~~~~~~~n~~~c~~~ 353 (599)
.+...++.+|++.|+++
T Consensus 498 ~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCCCEECCSCCBCCCHH
T ss_pred CCCEEEecCCCcCCCcc
Confidence 77888899999998875
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-41 Score=365.68 Aligned_cols=335 Identities=20% Similarity=0.196 Sum_probs=220.6
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|++++|+++ .+|..+. ++|++|+|++|+|+++.|++|.++++|++|+|++|+|+++.+. .|+++++|++|||
T Consensus 5 l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L 76 (520)
T 2z7x_B 5 VDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-----VFKFNQELEYLDL 76 (520)
T ss_dssp EECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-----GGTTCTTCCEEEC
T ss_pred EecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-----HhhcccCCCEEec
Confidence 456677776 4565554 6677777777777766666677777777777777777665443 4666777777777
Q ss_pred ccCcccccCChhhhcccccceEEEccCCccccc-CCccccCCCCCCEEEccCCcCCcccCccccCCCCC--CEEEccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGS-IPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKL--QLLSLEDNQ 157 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L--~~L~L~~N~ 157 (599)
++|+|+.+.+. .++ .|++|++++|.+++. .|..|+++++|++|+|++|.+++ ..|..+++| ++|++++|.
T Consensus 77 s~N~l~~lp~~---~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 77 SHNKLVKISCH---PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp CSSCCCEEECC---CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred CCCceeecCcc---ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 77777643332 343 466777777776653 45666677777777777666654 234444444 555555555
Q ss_pred c--cccCChhhhcCC-----------------------------------------------------------------
Q 042902 158 L--EGSIPDDLCRLA----------------------------------------------------------------- 170 (599)
Q Consensus 158 l--~~~~~~~~~~l~----------------------------------------------------------------- 170 (599)
+ .+..|..+..+.
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 5 333333333211
Q ss_pred ------------------CCcEEEeeCCccCCCCCccc------------------------------------------
Q 042902 171 ------------------ALFLLDLGGNKLSGFVPACF------------------------------------------ 190 (599)
Q Consensus 171 ------------------~L~~L~Ls~N~l~~~~~~~~------------------------------------------ 190 (599)
+|++|++++|++++..|..+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 45555555555554444333
Q ss_pred -----------CCCCCCcEeecCCCCCCC-CCccccCCCcccEEeecCCCccc--cCcccccccccccEEEccCCccCCC
Q 042902 191 -----------GNLTSLRNLYLGSNQLTS-IPSTLWNLKYILYLNLSSNSFTG--PLPLEIGNLRVLVQIDLSMNNFSGF 256 (599)
Q Consensus 191 -----------~~l~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~ 256 (599)
..+++|++|++++|+++. +|..+..+++|++|++++|++++ ..|..+..+++|+.|+|++|.+++.
T Consensus 310 ~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred CCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 566777788888887775 56677777788888888888776 3456677778888888888888773
Q ss_pred CC-ccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCC-CCC
Q 042902 257 IP-TTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPR-EGP 334 (599)
Q Consensus 257 ~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~ 334 (599)
+| ..+..+++|++|++++|++++..|..+. ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++..++. ...
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhcc
Confidence 34 3477778888888888888766666554 67888888888888 6777777888888888888888853333 344
Q ss_pred CCCcccccccCCCCCcCCC
Q 042902 335 FRNFSAESFKGNELLCGTP 353 (599)
Q Consensus 335 ~~~~~~~~~~~n~~~c~~~ 353 (599)
+..+...++.+|++.|.|+
T Consensus 467 l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CCcccEEECcCCCCcccCC
Confidence 5667777788888877654
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.5e-41 Score=375.40 Aligned_cols=353 Identities=24% Similarity=0.265 Sum_probs=278.8
Q ss_pred CccCCCcCccCCCCCCcCCCC--CCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCc---------------
Q 042902 1 LLLWGNNFSGTIPSFIFNASK--LSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKL--------------- 63 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~--L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--------------- 63 (599)
|+|++|++++..|..|.+++. |++|+|++|+++++.|..|+++++|++|+|++|++++..+..
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred EEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 356667777666666666543 777777777777666666777777777777777666554321
Q ss_pred ---------ccc----cccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCccc--ccCCccccCC--CCCCE
Q 042902 64 ---------NFL----SSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNIS--GSIPEEISNL--TNLTT 126 (599)
Q Consensus 64 ---------~~~----~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~--~~~~~~~~~l--~~L~~ 126 (599)
... ..|..+++|++|++++|.++++.+..|.+++ .|+.|++++|.+. ......|..+ ++|++
T Consensus 307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 000 0355666677777777777766666666665 3677777766532 2223334332 46777
Q ss_pred EEccCCcCCcccCccccCCCCCCEEEcccccccccCC-hhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCC
Q 042902 127 IYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIP-DDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQ 205 (599)
Q Consensus 127 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 205 (599)
|+|++|+++++.|.+|..+++|++|+|++|.+.+.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 7778888888888899999999999999999987555 688999999999999999998889999999999999999999
Q ss_pred CC---CCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCC--------ccccCccccccccccc
Q 042902 206 LT---SIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIP--------TTIGDLKDLQYLFLEY 274 (599)
Q Consensus 206 l~---~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~L~~ 274 (599)
++ .+|..+..+++|++|++++|++++..+..|.++++|+.|+|++|.+++..+ ..|.++++|++|+|++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 86 467889999999999999999999888899999999999999999987532 2478999999999999
Q ss_pred ccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCCC--CCCCcccccccCCCCCcCC
Q 042902 275 NRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREG--PFRNFSAESFKGNELLCGT 352 (599)
Q Consensus 275 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~ 352 (599)
|+++.+.+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++.+|... .+..+...++.+|||.|+|
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99997777789999999999999999998888888999999999999999998776532 4677888899999999998
Q ss_pred CC
Q 042902 353 PN 354 (599)
Q Consensus 353 ~~ 354 (599)
+.
T Consensus 626 ~~ 627 (680)
T 1ziw_A 626 ES 627 (680)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-40 Score=365.46 Aligned_cols=345 Identities=21% Similarity=0.207 Sum_probs=184.8
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCc-----------------
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKL----------------- 63 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------------- 63 (599)
|+|++|++++..|..|.++++|++|+|++|+++++.|.+|+++++|++|+|++|+++.+++..
T Consensus 62 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l 141 (606)
T 3t6q_A 62 LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141 (606)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred EECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence 355666666655666666666666666666666555555666666666666555555542210
Q ss_pred c--cccccCCCCCCcEEEcccCcccccCChhhhcccccce--EEEccCCccccc--------------------------
Q 042902 64 N--FLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSME--VFFMFNCNISGS-------------------------- 113 (599)
Q Consensus 64 ~--~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~--~l~l~~n~i~~~-------------------------- 113 (599)
. ....+..+++|++|++++|.++++.|..|..+++ ++ .+++++|.+.+.
T Consensus 142 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 220 (606)
T 3t6q_A 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ-ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220 (606)
T ss_dssp CCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT-CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHH
T ss_pred cccCcccccCCcccCEEEcccCcccccChhhhhhhcc-cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhh
Confidence 0 0012333556666666666666555555555442 33 344444444333
Q ss_pred -------------------------------------------------CCccccCCCCCCEEEccCCcCCcccCccccC
Q 042902 114 -------------------------------------------------IPEEISNLTNLTTIYLGGNKLNGSIPIALDK 144 (599)
Q Consensus 114 -------------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 144 (599)
.+..|.++++|++|+|++|.++ .+|..+..
T Consensus 221 ~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~ 299 (606)
T 3t6q_A 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299 (606)
T ss_dssp HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS
T ss_pred hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc
Confidence 3333444555555555555555 33444555
Q ss_pred CCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCC-CcccCCCCCCcEeecCCCCCCCC---CccccCCCccc
Q 042902 145 LQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFV-PACFGNLTSLRNLYLGSNQLTSI---PSTLWNLKYIL 220 (599)
Q Consensus 145 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~l~~L~ 220 (599)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.. +..|..+++|++|++++|.++.+ |..+..+++|+
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 555555555555555555555555555555555555554332 23355555555555555555543 34455555566
Q ss_pred EEeecCCCccccCcccccccccccEEEccCCccCCCCCc-cccCcccccccccccccccccCcccccCCCCcccccCCCC
Q 042902 221 YLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPT-TIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNN 299 (599)
Q Consensus 221 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 299 (599)
+|++++|.+++..|..|..+++|+.|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 666666665555555555556666666666665544333 2555566666666666665555555555666666666666
Q ss_pred ccccc---CCchhhccccceEEEcccccCcccCCCC-CCCCCcccccccCCC
Q 042902 300 NISGA---IPISLEKLLDLKYINVSFNKLEGEIPRE-GPFRNFSAESFKGNE 347 (599)
Q Consensus 300 ~l~~~---~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~~~~~~~~~~~n~ 347 (599)
++++. .+..+..+++|+.|++++|++++.+|.. ..+..+...++.+|.
T Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 55541 2244555556666666666665554432 334444455555554
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=358.45 Aligned_cols=324 Identities=21% Similarity=0.172 Sum_probs=294.3
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..|..|.++++|++|+|++|+|+++.|.+|.++++|++|+|++|+++.+++. .|.++++|++|+|
T Consensus 37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 111 (477)
T 2id5_A 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG-----VFTGLSNLTKLDI 111 (477)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT-----SSTTCTTCCEEEC
T ss_pred EECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc-----cccCCCCCCEEEC
Confidence 68999999999999999999999999999999999999999999999999999999998875 5899999999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG 160 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 160 (599)
++|.|+++.+..|..++ .|+.|++++|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|.+.+
T Consensus 112 s~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999999999999997 59999999999999999999999999999999999998888889999999999999999999
Q ss_pred cCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCccccCcccccc
Q 042902 161 SIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLPLEIGN 239 (599)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 239 (599)
..+..|..+++|+.|++++|.+.+..+.......+|++|++++|.++.+|. .+..+++|+.|+|++|.+++..+..|.+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 988899999999999999998877777666666799999999999999985 6788999999999999999998999999
Q ss_pred cccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEE
Q 042902 240 LRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYIN 319 (599)
Q Consensus 240 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ 319 (599)
+++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...+.. .-...+..++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~ 349 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLN 349 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccc
Confidence 999999999999999999999999999999999999999988889999999999999999998543322 1122333455
Q ss_pred cccccCcccCCC
Q 042902 320 VSFNKLEGEIPR 331 (599)
Q Consensus 320 l~~N~l~~~~p~ 331 (599)
+.++...|..|.
T Consensus 350 ~~~~~~~C~~p~ 361 (477)
T 2id5_A 350 FNRQQPTCATPE 361 (477)
T ss_dssp CTTCCCBEEESG
T ss_pred cCccCceeCCch
Confidence 667777766664
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-40 Score=367.08 Aligned_cols=210 Identities=22% Similarity=0.187 Sum_probs=190.5
Q ss_pred CCCCCCEEEccCCcCCcc--cCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCC-cccCCCCCC
Q 042902 120 NLTNLTTIYLGGNKLNGS--IPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVP-ACFGNLTSL 196 (599)
Q Consensus 120 ~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 196 (599)
.+++|++|+|++|.+++. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++++..+ ..|..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 455667777777777755 37788999999999999999985 56889999999999999999998887 789999999
Q ss_pred cEeecCCCCCCC-CCccccCCCcccEEeecCCCccc-cCcccccccccccEEEccCCccCCCCCccccCccccccccccc
Q 042902 197 RNLYLGSNQLTS-IPSTLWNLKYILYLNLSSNSFTG-PLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEY 274 (599)
Q Consensus 197 ~~L~L~~N~l~~-ip~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 274 (599)
++|++++|.++. .|..+..+++|++|++++|.+++ ..|..|..+++|+.|+|++|.+++..|..|+++++|++|+|++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 999999999996 46788899999999999999998 4788999999999999999999999999999999999999999
Q ss_pred ccccccCcccccCCCCcccccCCCCcccccCCchhhccc-cceEEEcccccCcccCCC
Q 042902 275 NRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLL-DLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 275 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~p~ 331 (599)
|++++..|..|..+++|+.|+|++|+++ .+|..+..++ +|++|++++|++.|.++.
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999 6777799997 599999999999998875
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-40 Score=359.93 Aligned_cols=316 Identities=21% Similarity=0.215 Sum_probs=274.3
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..|..|.++++|++|+|++|+|+++.|++|.++++|++|+|++|+|+.++.. .+++|++|+|
T Consensus 57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--------~l~~L~~L~L 128 (562)
T 3a79_B 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--------PMASLRHLDL 128 (562)
T ss_dssp EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--------CCTTCSEEEC
T ss_pred EECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--------ccccCCEEEC
Confidence 68999999988889999999999999999999999999999999999999999999987752 7899999999
Q ss_pred ccCcccccC-ChhhhcccccceEEEccCCcccccCCccccCCCCC--CEEEccCCcC--CcccCccccCCC---------
Q 042902 81 SNNSLDGIL-PRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNL--TTIYLGGNKL--NGSIPIALDKLQ--------- 146 (599)
Q Consensus 81 s~N~i~~~~-~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~l~--------- 146 (599)
++|+|+++. |..|.+++ .|+.|++++|.+++. .+.++++| ++|+|++|.+ ++..|..|..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 204 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204 (562)
T ss_dssp CSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred CCCCccccCchHhhcccC-cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence 999999754 68999997 599999999999864 34555555 9999999988 666666665543
Q ss_pred ------------------------------------------------------------------------CCCEEEcc
Q 042902 147 ------------------------------------------------------------------------KLQLLSLE 154 (599)
Q Consensus 147 ------------------------------------------------------------------------~L~~L~L~ 154 (599)
+|++|+++
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 67788888
Q ss_pred cccccccCChhh-----------------------------------------------------hcCCCCcEEEeeCCc
Q 042902 155 DNQLEGSIPDDL-----------------------------------------------------CRLAALFLLDLGGNK 181 (599)
Q Consensus 155 ~N~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~Ls~N~ 181 (599)
+|.+.+.+|..+ ..+++|++|++++|+
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCc
Confidence 888876666544 677899999999999
Q ss_pred cCCCCCcccCCCCCCcEeecCCCCCCCCC---ccccCCCcccEEeecCCCccc-cCcccccccccccEEEccCCccCCCC
Q 042902 182 LSGFVPACFGNLTSLRNLYLGSNQLTSIP---STLWNLKYILYLNLSSNSFTG-PLPLEIGNLRVLVQIDLSMNNFSGFI 257 (599)
Q Consensus 182 l~~~~~~~~~~l~~L~~L~L~~N~l~~ip---~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (599)
+++..|..|..+++|++|++++|+++.++ ..+..+++|++|++++|.+++ ..+..+..+++|+.|+|++|++++..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 99989999999999999999999999876 468899999999999999998 44456899999999999999999877
Q ss_pred CccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCC
Q 042902 258 PTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 331 (599)
|..+. ++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 76654 79999999999999 5666666999999999999999954444499999999999999999998764
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=365.48 Aligned_cols=325 Identities=22% Similarity=0.268 Sum_probs=266.6
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..|..|.++++|++|+|++|+++++.|++|+++++|++|+|++|+++.+++. .++++++|++|++
T Consensus 57 L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~l~~L~~L~L 131 (570)
T 2z63_A 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNV 131 (570)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-----SCTTCTTCCEEEC
T ss_pred EECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc-----cccccccccEEec
Confidence 57888999888888888899999999999999888888889999999999999988887753 3677777777888
Q ss_pred ccCccccc-CChhhhcccccceEEEccCCcccccCCccccC---------------------------------------
Q 042902 81 SNNSLDGI-LPRAIGNLSQSMEVFFMFNCNISGSIPEEISN--------------------------------------- 120 (599)
Q Consensus 81 s~N~i~~~-~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~--------------------------------------- 120 (599)
++|.++++ .|..|.+++ .|+.|++++|.+++..+..|..
T Consensus 132 ~~n~l~~~~lp~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp CSSCCCCCCCCGGGGGCT-TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred CCCccceecChhhhcccC-CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 77777763 477777775 3777777777665544433333
Q ss_pred ----------------------------------------------------------------------CCCCCEEEcc
Q 042902 121 ----------------------------------------------------------------------LTNLTTIYLG 130 (599)
Q Consensus 121 ----------------------------------------------------------------------l~~L~~L~L~ 130 (599)
+++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 3444444444
Q ss_pred CCcCCcccCccc------------------------------------------cCCCCCCEEEcccccccccC--Chhh
Q 042902 131 GNKLNGSIPIAL------------------------------------------DKLQKLQLLSLEDNQLEGSI--PDDL 166 (599)
Q Consensus 131 ~N~l~~~~~~~~------------------------------------------~~l~~L~~L~L~~N~l~~~~--~~~~ 166 (599)
+|.+++ +|..+ ..+++|++|++++|.+.+.. +..+
T Consensus 291 ~~~l~~-l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 291 SVTIER-VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp SCEECS-CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred Cccchh-hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc
Confidence 444442 22111 34566777777777776543 6778
Q ss_pred hcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc--cccCCCcccEEeecCCCccccCccccccccccc
Q 042902 167 CRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS--TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLV 244 (599)
Q Consensus 167 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 244 (599)
..+++|++|++++|.+++..+. |..+++|++|++++|.++.++. .+..+++|++|++++|.+++..|..|.++++|+
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 8899999999999999876555 9999999999999999997643 678899999999999999999999999999999
Q ss_pred EEEccCCccC-CCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccc
Q 042902 245 QIDLSMNNFS-GFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFN 323 (599)
Q Consensus 245 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N 323 (599)
.|+|++|.++ +.+|..+..+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999998 578899999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCcccCCCCC
Q 042902 324 KLEGEIPREG 333 (599)
Q Consensus 324 ~l~~~~p~~~ 333 (599)
+++|.+|...
T Consensus 529 ~~~~~~~~~~ 538 (570)
T 2z63_A 529 PWDCSCPRID 538 (570)
T ss_dssp CBCCCTTTTH
T ss_pred cccCCCcchH
Confidence 9999998753
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-40 Score=373.65 Aligned_cols=315 Identities=21% Similarity=0.241 Sum_probs=217.1
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEc-cCcccccc--------------------------------------------
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLEL-EMNSFYGF-------------------------------------------- 35 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L-~~n~i~~~-------------------------------------------- 35 (599)
|+|++|+++|.+|..|.++++|+.|+| ++|.+.+.
T Consensus 328 L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp EECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred EECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 578888999889988999999999999 66654333
Q ss_pred --------------------------------CCccccCCCCCCEEeccCccCcc------------------cCCCccc
Q 042902 36 --------------------------------IPNTFGNLRNLKRLSLNYNYLTS------------------STPKLNF 65 (599)
Q Consensus 36 --------------------------------~~~~~~~l~~L~~L~L~~N~l~~------------------~~~~~~~ 65 (599)
+|..|+++++|++|+|++|+|++ +|.
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~---- 483 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE---- 483 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh----
Confidence 67788888999999999998887 554
Q ss_pred ccccC--CCCCCcEEEcccCcccccCChhhhcccccceEEEccCCc-ccc-cCCccccCCC-------CCCEEEccCCcC
Q 042902 66 LSSLS--NCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCN-ISG-SIPEEISNLT-------NLTTIYLGGNKL 134 (599)
Q Consensus 66 ~~~~~--~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~N~l 134 (599)
.++ ++++|++|+|++|++.+.+|..|.+++ .|+.|++++|+ +++ .+|..+++++ +|++|+|++|.+
T Consensus 484 --~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 484 --ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp --CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred --hhhhccCCCCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 345 888888888888888888888888887 48888888887 877 6776555444 888888888888
Q ss_pred CcccCc--cccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCC-CcEeecCCCCCCCCCc
Q 042902 135 NGSIPI--ALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTS-LRNLYLGSNQLTSIPS 211 (599)
Q Consensus 135 ~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~ip~ 211 (599)
+ .+|. .|.++++|++|+|++|+++ .+| .|..+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|.++.+|.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch
Confidence 8 5666 7888888888888888888 666 7888888888888888888 56677888887 8888888888888887
Q ss_pred cccCCCc--ccEEeecCCCccccCcccc---c--ccccccEEEccCCccCCCCCccccCcccccccccccccccccCccc
Q 042902 212 TLWNLKY--ILYLNLSSNSFTGPLPLEI---G--NLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDS 284 (599)
Q Consensus 212 ~~~~l~~--L~~L~Ls~N~l~~~~~~~~---~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 284 (599)
.+..++. |+.|+|++|++++.+|... . .+++|+.|+|++|.++.+.+..+..+++|+.|+|++|+++...+..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 6655443 7777777777765444221 1 2235555555555555332223334555555555555555222222
Q ss_pred ccCC-------CCcccccCCCCcccccCCchhh--ccccceEEEcccccCcc
Q 042902 285 IGGL-------IDLKSLDLSNNNISGAIPISLE--KLLDLKYINVSFNKLEG 327 (599)
Q Consensus 285 ~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~l~l~~N~l~~ 327 (599)
+... ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence 2211 14555555555555 4444443 45555555555555554
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-40 Score=364.09 Aligned_cols=178 Identities=19% Similarity=0.175 Sum_probs=107.8
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..|..|.++++|++|+|++|+|+++.|++|.++++|++|+|++|+++++++. .|+++++|++|+|
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L 105 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-----WFGPLSSLKYLNL 105 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-----HHTTCTTCCEEEC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-----HhccCCCCcEEEC
Confidence 46677777766666777777777777777777776666777777777777777777666543 3666677777777
Q ss_pred ccCccccc-CChhhhcccccceEEEccCCc-ccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccc
Q 042902 81 SNNSLDGI-LPRAIGNLSQSMEVFFMFNCN-ISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQL 158 (599)
Q Consensus 81 s~N~i~~~-~~~~~~~l~~~l~~l~l~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 158 (599)
++|.+++. .|..|.+++ .|+.|++++|. +....+..|.++++|++|+|++|.+++..|..+..+++|++|++++|.+
T Consensus 106 s~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 77776653 345566665 36667776666 3433345666667777777777766666666655544444444444443
Q ss_pred cccCChhhhcCCCCcEEEeeCCccCC
Q 042902 159 EGSIPDDLCRLAALFLLDLGGNKLSG 184 (599)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~ 184 (599)
....+..+..+++|++|++++|++++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred cccchhhHhhcccccEEEccCCcccc
Confidence 32111112334555555555555544
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-39 Score=362.31 Aligned_cols=347 Identities=23% Similarity=0.285 Sum_probs=278.5
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|||++|+|++..|.+|.++++|++|+|++|+|+++.+++|++|++|++|+|++|+|+.+++. .|.++++|++|+|
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~-----~f~~L~~L~~L~L 131 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-----AFSGLSSLQKLVA 131 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG-----GGTTCTTCCEEEC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH-----HhcCCCCCCEEEC
Confidence 68999999988888899999999999999999998888999999999999999999988865 5889999999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCccccc-CCccccCCCCCCEEEccCCcCCcccCccccCCCC------------
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGS-IPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQK------------ 147 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------------ 147 (599)
++|+|+++.+.+|++++ .|+.|++++|.+++. .|..+.++++|++|+|++|+|++..+..|..+.+
T Consensus 132 s~N~l~~l~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCCCCChhhhhcCc-ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999988888888887 499999999998764 5778888999999999999887665544432221
Q ss_pred --------------------------------------------------------------------------------
Q 042902 148 -------------------------------------------------------------------------------- 147 (599)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (599)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred ---------------------------------------CCEEEcccccccccCCh-------------------hhhcC
Q 042902 148 ---------------------------------------LQLLSLEDNQLEGSIPD-------------------DLCRL 169 (599)
Q Consensus 148 ---------------------------------------L~~L~L~~N~l~~~~~~-------------------~~~~l 169 (599)
|+.|++.+|.+....+. ....+
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 22222222222211110 11234
Q ss_pred CCCcEEEeeCCccCCC-------------------------CCcccCCCCCCcEeecCCCCCCCCC--ccccCCCcccEE
Q 042902 170 AALFLLDLGGNKLSGF-------------------------VPACFGNLTSLRNLYLGSNQLTSIP--STLWNLKYILYL 222 (599)
Q Consensus 170 ~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L 222 (599)
++|+.|++++|.+... .+..+..+++|+.+++++|.....+ ..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 5677777777766421 1234556677777777777666443 356678899999
Q ss_pred eecCCCccccCcccccccccccEEEccCCcc-CCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcc
Q 042902 223 NLSSNSFTGPLPLEIGNLRVLVQIDLSMNNF-SGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNI 301 (599)
Q Consensus 223 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 301 (599)
+++.|.+.+..+..+..++.|+.|+|++|.+ .+..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 9999999999999999999999999999985 456788999999999999999999999999999999999999999999
Q ss_pred cccCCchhhccccceEEEcccccCcccCCCC-CCC-CCcccccccCCCCCcCCC
Q 042902 302 SGAIPISLEKLLDLKYINVSFNKLEGEIPRE-GPF-RNFSAESFKGNELLCGTP 353 (599)
Q Consensus 302 ~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~~-~~~~~~~~~~n~~~c~~~ 353 (599)
++..|..|..+++|++|++++|++++.+|.. ..+ ..+...++.+|||.|+|.
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999988865 233 567788999999999875
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7e-40 Score=369.95 Aligned_cols=340 Identities=16% Similarity=0.206 Sum_probs=293.1
Q ss_pred CccCCCcCcc-----------------CCCCCCc--CCCCCCEEEccCccccccCCccccCCCCCCEEeccCcc-Ccc--
Q 042902 1 LLLWGNNFSG-----------------TIPSFIF--NASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNY-LTS-- 58 (599)
Q Consensus 1 L~L~~n~~~~-----------------~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~-- 58 (599)
|+|++|++++ .+|..+. ++++|++|+|++|++.+.+|..|.++++|++|+|++|+ ++.
T Consensus 453 L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~ 532 (876)
T 4ecn_A 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532 (876)
T ss_dssp EEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH
T ss_pred EECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc
Confidence 6789999998 4899987 99999999999999999999999999999999999998 875
Q ss_pred cCCCccccc-ccCCCCCCcEEEcccCcccccCCh--hhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCC
Q 042902 59 STPKLNFLS-SLSNCKYLKYLSFSNNSLDGILPR--AIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLN 135 (599)
Q Consensus 59 ~~~~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~--~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~ 135 (599)
+|..+..+. .+..+++|++|+|++|.|+ .+|. .|.+++ .|+.|++++|+++ .+| .|.++++|++|+|++|.++
T Consensus 533 iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 533 LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc
Confidence 444322222 4567779999999999999 6677 899997 5999999999999 677 8999999999999999999
Q ss_pred cccCccccCCCC-CCEEEcccccccccCChhhhcCCC--CcEEEeeCCccCCCCCccc---C--CCCCCcEeecCCCCCC
Q 042902 136 GSIPIALDKLQK-LQLLSLEDNQLEGSIPDDLCRLAA--LFLLDLGGNKLSGFVPACF---G--NLTSLRNLYLGSNQLT 207 (599)
Q Consensus 136 ~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~~---~--~l~~L~~L~L~~N~l~ 207 (599)
.+|..+..+++ |++|+|++|.++ .+|..+..++. |+.|+|++|++++.+|... . .+++|+.|+|++|.++
T Consensus 609 -~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 609 -EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp -CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC
T ss_pred -cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC
Confidence 77888999999 999999999999 67888877654 9999999999998766433 2 3458999999999999
Q ss_pred CCCcccc-CCCcccEEeecCCCccccCcccccc-------cccccEEEccCCccCCCCCcccc--Ccccccccccccccc
Q 042902 208 SIPSTLW-NLKYILYLNLSSNSFTGPLPLEIGN-------LRVLVQIDLSMNNFSGFIPTTIG--DLKDLQYLFLEYNRL 277 (599)
Q Consensus 208 ~ip~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l 277 (599)
.+|..++ .+++|+.|+|++|+++.+.+..+.. +++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|++
T Consensus 687 ~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L 765 (876)
T 4ecn_A 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765 (876)
T ss_dssp SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC
T ss_pred ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC
Confidence 9998765 7899999999999999544444443 349999999999999 5677776 999999999999999
Q ss_pred cccCcccccCCCCcccccCCC------CcccccCCchhhccccceEEEcccccCcccCCCCCCCCCcccccccCCCCCc
Q 042902 278 QGSIPDSIGGLIDLKSLDLSN------NNISGAIPISLEKLLDLKYINVSFNKLEGEIPREGPFRNFSAESFKGNELLC 350 (599)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c 350 (599)
++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|... ...+...++.+|++..
T Consensus 766 ~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp SS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred Cc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 97 788899999999999976 889999999999999999999999999 6777752 3577788888887643
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=358.10 Aligned_cols=316 Identities=22% Similarity=0.274 Sum_probs=263.1
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..|..|.++++|++|+|++|+|+++.|++|+++++|++|+|++|+|+.++. . .+++|++|+|
T Consensus 26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~-~l~~L~~L~L 97 (520)
T 2z7x_B 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-------H-PTVNLKHLDL 97 (520)
T ss_dssp EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-------C-CCCCCSEEEC
T ss_pred EECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-------c-ccCCccEEec
Confidence 6899999998888899999999999999999999989999999999999999999997764 2 7889999999
Q ss_pred ccCccccc-CChhhhcccccceEEEccCCcccccCCccccCCCCC--CEEEccCCcC--CcccCccccCCC---------
Q 042902 81 SNNSLDGI-LPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNL--TTIYLGGNKL--NGSIPIALDKLQ--------- 146 (599)
Q Consensus 81 s~N~i~~~-~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L--~~L~L~~N~l--~~~~~~~~~~l~--------- 146 (599)
++|.|+++ .|..|++++ .|+.|++++|.+++ ..+..+++| ++|+|++|.+ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMS-QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCT-TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCC-cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 99999874 678888887 48888888888875 345555555 6677766666 444444444322
Q ss_pred --------------------------------------------------------------------------CCCEEE
Q 042902 147 --------------------------------------------------------------------------KLQLLS 152 (599)
Q Consensus 147 --------------------------------------------------------------------------~L~~L~ 152 (599)
+|++|+
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 556666
Q ss_pred cccccccccCChhh-----------------------------------------------------hcCCCCcEEEeeC
Q 042902 153 LEDNQLEGSIPDDL-----------------------------------------------------CRLAALFLLDLGG 179 (599)
Q Consensus 153 L~~N~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~Ls~ 179 (599)
+++|++.+.+|..+ ..+++|++|++++
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence 66666554444433 5678999999999
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCC---CccccCCCcccEEeecCCCccccCcc-cccccccccEEEccCCccCC
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSI---PSTLWNLKYILYLNLSSNSFTGPLPL-EIGNLRVLVQIDLSMNNFSG 255 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~i---p~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 255 (599)
|++++..|..+..+++|++|++++|+++.+ |..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|.+++
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 999998899999999999999999999964 46788999999999999999984554 58899999999999999998
Q ss_pred CCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCC
Q 042902 256 FIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 331 (599)
..|..+. ++|++|+|++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|++++|+++|.++.
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8777665 79999999999999 6777777999999999999999954444589999999999999999998763
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=372.15 Aligned_cols=345 Identities=22% Similarity=0.208 Sum_probs=232.8
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCcc-ccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEE
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNS-FYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLS 79 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~ 79 (599)
|+|++|++++..|..|.++++|++|+|++|. +..+.|.+|+++++|++|+|++|.|+.+.+. .|+++++|++|+
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~ 103 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-----AFQGLFHLFELR 103 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-----SSCSCSSCCCEE
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-----HccCCcccCEee
Confidence 4677777777666666666666666666663 3334466666666666666666666665443 456666666666
Q ss_pred cccCcccccCChh--hhcccccceEEEccCCcccccCC-ccccCCCCCCEEEccCCcCCcccCccccC------------
Q 042902 80 FSNNSLDGILPRA--IGNLSQSMEVFFMFNCNISGSIP-EEISNLTNLTTIYLGGNKLNGSIPIALDK------------ 144 (599)
Q Consensus 80 Ls~N~i~~~~~~~--~~~l~~~l~~l~l~~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------ 144 (599)
|++|.+++..|.. |.+++ .|+.|++++|.+++..+ ..|+++++|++|+|++|.+++..+..+..
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 6666665543333 55554 36666666666655443 34556666666666665554433322211
Q ss_pred --------------------------------------------------------------------------------
Q 042902 145 -------------------------------------------------------------------------------- 144 (599)
Q Consensus 145 -------------------------------------------------------------------------------- 144 (599)
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence
Q ss_pred --CCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCC-CccccCCCcccE
Q 042902 145 --LQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSI-PSTLWNLKYILY 221 (599)
Q Consensus 145 --l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~l~~L~~ 221 (599)
.++|++|+|++|.+.+..+..|..+++|+.|+|++|++++..+..|.++++|++|+|++|.++.+ |..+..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 13566666666666666666777778888888888888877777888888888888888888766 557778888888
Q ss_pred EeecCCCccccCcccccccccccEEEccCCccCCCCC----------------------------------------ccc
Q 042902 222 LNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIP----------------------------------------TTI 261 (599)
Q Consensus 222 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------------------------~~~ 261 (599)
|++++|.+++..+..|.++++|+.|+|++|.+++... ..+
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhh
Confidence 8888888887777778888888888888887764311 012
Q ss_pred cCcccccccccccccccc------------------------------cCcccccCCCCcccccCCCCcccccCCchhhc
Q 042902 262 GDLKDLQYLFLEYNRLQG------------------------------SIPDSIGGLIDLKSLDLSNNNISGAIPISLEK 311 (599)
Q Consensus 262 ~~l~~L~~L~L~~N~l~~------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 311 (599)
..+++|++|+|++|++++ ..+..|..+++|+.|+|++|++++..|..|..
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred hcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 245555555555555542 22345777889999999999999988999999
Q ss_pred cccceEEEcccccCcccCCCCCCCCCcccccccCCCCCcCC
Q 042902 312 LLDLKYINVSFNKLEGEIPREGPFRNFSAESFKGNELLCGT 352 (599)
Q Consensus 312 l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~ 352 (599)
+++|+.|+|++|++++.+|...+ ..+...++.+|......
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPN 542 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCC
T ss_pred hhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCC
Confidence 99999999999999987766544 66777777777654433
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.1e-39 Score=358.48 Aligned_cols=326 Identities=21% Similarity=0.230 Sum_probs=284.9
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccc---------------------------------cCCCCCC
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTF---------------------------------GNLRNLK 47 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---------------------------------~~l~~L~ 47 (599)
|+|++|++++..|..|..+++|++|+|++|+++++.|.+| ..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 5788888888888888888888888888888887766544 4455666
Q ss_pred EEeccCccCcccCCCcccccccCCCCCCcEEEcccCccc--ccCChhhhccc-ccceEEEccCCcccccCCccccCCCCC
Q 042902 48 RLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLD--GILPRAIGNLS-QSMEVFFMFNCNISGSIPEEISNLTNL 124 (599)
Q Consensus 48 ~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~--~~~~~~~~~l~-~~l~~l~l~~n~i~~~~~~~~~~l~~L 124 (599)
+|+|++|+++.+++. .|.++++|++|++++|.++ .+.+..|..+. ..++.+++++|++++..|..|.++++|
T Consensus 333 ~L~l~~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSN-----MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp EEECCSCCBCCCCTT-----TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred EEECCCCccCCCChh-----HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 666667777776654 5899999999999999853 44455565543 369999999999999999999999999
Q ss_pred CEEEccCCcCCcccC-ccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccC--CCCCcccCCCCCCcEeec
Q 042902 125 TTIYLGGNKLNGSIP-IALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLS--GFVPACFGNLTSLRNLYL 201 (599)
Q Consensus 125 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L 201 (599)
++|+|++|.+.+.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +..|..|..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 999999999987554 78999999999999999999999999999999999999999997 567889999999999999
Q ss_pred CCCCCCCCCc-cccCCCcccEEeecCCCccccCc--------ccccccccccEEEccCCccCCCCCccccCccccccccc
Q 042902 202 GSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLP--------LEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFL 272 (599)
Q Consensus 202 ~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 272 (599)
++|+++.+|. .+.++++|++|++++|++++..+ ..|.++++|+.|+|++|+++.+.+..|.++++|+.|+|
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence 9999999876 57889999999999999987532 23788999999999999999777778999999999999
Q ss_pred ccccccccCcccccCCCCcccccCCCCcccccCCchhh-ccccceEEEcccccCcccCCC
Q 042902 273 EYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLE-KLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 273 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~ 331 (599)
++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.|++++|++.|.++.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999988888899999999999999999998888887 799999999999999999875
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-39 Score=334.79 Aligned_cols=313 Identities=19% Similarity=0.229 Sum_probs=257.9
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhccc
Q 042902 18 NASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLS 97 (599)
Q Consensus 18 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~ 97 (599)
.+++++.|++++|.++.+.+..|..+++|++|+|++|.++.+++. .|..+++|++|+|++|.|+++.|..|.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-----hccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 458899999999999988777789999999999999999888764 588899999999999999988888888887
Q ss_pred ccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEe
Q 042902 98 QSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDL 177 (599)
Q Consensus 98 ~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 177 (599)
.|+.|++++|.++...+..|.++++|++|+|++|.+++..+..|..+++|++|++++|++++. .+..+++|+.|++
T Consensus 118 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 599999999999877777788999999999999999988888899999999999999998865 3567788899999
Q ss_pred eCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCC
Q 042902 178 GGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFI 257 (599)
Q Consensus 178 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (599)
++|.+++. ...++|++|++++|.++.+|... .++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cccccccc-----CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 99888753 33467888888888888776543 46788888888888864 56788888888888888888888
Q ss_pred CccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCCCCCCC
Q 042902 258 PTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREGPFRN 337 (599)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~ 337 (599)
|..|..+++|++|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++... ...+..
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~ 340 (390)
T 3o6n_A 265 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHT 340 (390)
T ss_dssp SGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCC
T ss_pred hhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhcc
Confidence 8888888888888888888885 4556677888888888888888 56667788888888888888887553 345667
Q ss_pred cccccccCCCCCcCC
Q 042902 338 FSAESFKGNELLCGT 352 (599)
Q Consensus 338 ~~~~~~~~n~~~c~~ 352 (599)
+...++.+|++.|.+
T Consensus 341 L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 341 LKNLTLSHNDWDCNS 355 (390)
T ss_dssp CSEEECCSSCEEHHH
T ss_pred CCEEEcCCCCccchh
Confidence 777888888887754
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-38 Score=348.82 Aligned_cols=338 Identities=23% Similarity=0.260 Sum_probs=236.9
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++..|..|.++++|++|+|++|+++++.+..|+++++|++|+|++|+++.++.. ..++++++|++|++
T Consensus 55 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~L 130 (549)
T 2z81_A 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT----SLFPNLTNLQTLRI 130 (549)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS----CSCTTCTTCCEEEE
T ss_pred EECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh----hhhhccCCccEEEC
Confidence 68999999999999999999999999999999998888899999999999999999875421 25889999999999
Q ss_pred ccCc-ccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEccccccc
Q 042902 81 SNNS-LDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLE 159 (599)
Q Consensus 81 s~N~-i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 159 (599)
++|. +..+.+.+|.+++ .|+.|++++|.+++..|..+.++++|++|++++|.+....+..+..+++|++|++++|++.
T Consensus 131 ~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 131 GNVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCccccccCHhhhhccc-ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 9998 5656567888887 5999999999999988888876655555555554443222222233444444444444433
Q ss_pred c-------------------------------------------------------------------------------
Q 042902 160 G------------------------------------------------------------------------------- 160 (599)
Q Consensus 160 ~------------------------------------------------------------------------------- 160 (599)
+
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 2
Q ss_pred ----------------------------------cCChhh-hcCCCCcEEEeeCCccCCCCC---cccCCCCCCcEeecC
Q 042902 161 ----------------------------------SIPDDL-CRLAALFLLDLGGNKLSGFVP---ACFGNLTSLRNLYLG 202 (599)
Q Consensus 161 ----------------------------------~~~~~~-~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~ 202 (599)
.+|..+ ..+++|++|++++|++++..| ..++.+++|++|+++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls 369 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECT
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEcc
Confidence 122222 345556666666666554332 224555566666666
Q ss_pred CCCCCCCC---ccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccc
Q 042902 203 SNQLTSIP---STLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQG 279 (599)
Q Consensus 203 ~N~l~~ip---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 279 (599)
+|+++.+| ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. |..+ .++|++|+|++|++++
T Consensus 370 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~ 445 (549)
T 2z81_A 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDS 445 (549)
T ss_dssp TSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSC
T ss_pred CCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhh
Confidence 66665554 23455566666666666665 3455555566666666666665532 2222 1456666666666664
Q ss_pred cCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCC-CCCCCCcccccccCCCCCcCCC
Q 042902 280 SIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPR-EGPFRNFSAESFKGNELLCGTP 353 (599)
Q Consensus 280 ~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~~~~~~~~~~~~n~~~c~~~ 353 (599)
.+ ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++.+|. ...+..+...++.+|++.|.+|
T Consensus 446 ~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 446 FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 32 47889999999999999 5665 46799999999999999988776 3567788888999999999876
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.3e-38 Score=328.26 Aligned_cols=329 Identities=19% Similarity=0.191 Sum_probs=286.2
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|++++|.++...+..|.++++|++|+|++|+|+++.+.+|..+++|++|+|++|+++.+++. .|+++++|++|+|
T Consensus 50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 124 (390)
T 3o6n_A 50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTVLVL 124 (390)
T ss_dssp EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEEC
T ss_pred EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH-----HhcCCCCCCEEEC
Confidence 46788888866555678899999999999999999999999999999999999999998875 5899999999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG 160 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 160 (599)
++|.|+.+.+..|..++ .|+.|++++|.+++..+..|.++++|++|+|++|.+++. .+..+++|++|++++|.+++
T Consensus 125 ~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 99999977777788887 599999999999999999999999999999999999975 36778999999999999985
Q ss_pred cCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccccc
Q 042902 161 SIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNL 240 (599)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 240 (599)
. ...++|+.|++++|.++..... ..++|+.|++++|.++.+ ..+..+++|++|++++|.+++..|..|..+
T Consensus 201 ~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 201 L-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp E-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred c-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 3 3456899999999999876332 347899999999999987 468889999999999999999999999999
Q ss_pred ccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEc
Q 042902 241 RVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINV 320 (599)
Q Consensus 241 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 320 (599)
++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. | +..+++|+.|++
T Consensus 272 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 999999999999996 4666788999999999999999 5677788999999999999999855 3 677889999999
Q ss_pred ccccCcccCCCCCCCCCcccccccCCCCCcCCC
Q 042902 321 SFNKLEGEIPREGPFRNFSAESFKGNELLCGTP 353 (599)
Q Consensus 321 ~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 353 (599)
++|++.|.... ..+..+....+.+++..|.++
T Consensus 347 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 347 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 99999986433 234455556667777788765
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-38 Score=350.87 Aligned_cols=312 Identities=18% Similarity=0.220 Sum_probs=215.5
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccc
Q 042902 19 ASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQ 98 (599)
Q Consensus 19 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 98 (599)
+++++.|++++|.++.+.+..|.++++|++|+|++|.|+.+++. .|+.+++|++|+|++|.|+++.|..|.+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~- 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP- 123 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCT-
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-----HhcCCCCCCEEECCCCcCCCCCHHHHcCCC-
Confidence 46677777777777777666777777777777777777776654 477777777777777777777777777776
Q ss_pred cceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEee
Q 042902 99 SMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLG 178 (599)
Q Consensus 99 ~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 178 (599)
.|+.|++++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|.+++.. +..+++|+.|+++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 4777777777777666666777777777777777777777777777777777777777777542 4556677777777
Q ss_pred CCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCC
Q 042902 179 GNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIP 258 (599)
Q Consensus 179 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 258 (599)
+|.+++. ...++|+.|++++|.++.+|..+. ++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..|
T Consensus 201 ~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~~--~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 201 YNLLSTL-----AIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SSCCSEE-----ECCTTCSEEECCSSCCCEEECSCC--SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred cCccccc-----cCCchhheeeccCCcccccccccC--CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 7776642 234567777777777766654332 467777777777765 2556667777777777777776666
Q ss_pred ccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCCCCCCCc
Q 042902 259 TTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREGPFRNF 338 (599)
Q Consensus 259 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~ 338 (599)
..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++.. ...+..+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L 347 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 347 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCC
T ss_pred HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCC
Confidence 677777777777777777764 3555566677777777777776 45666666777777777777766543 2344556
Q ss_pred ccccccCCCCCcCC
Q 042902 339 SAESFKGNELLCGT 352 (599)
Q Consensus 339 ~~~~~~~n~~~c~~ 352 (599)
....+.+|++.|.+
T Consensus 348 ~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 348 KNLTLSHNDWDCNS 361 (597)
T ss_dssp SEEECCSSCEEHHH
T ss_pred CEEEeeCCCCCChh
Confidence 66666677666643
No 31
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=1.9e-39 Score=323.51 Aligned_cols=169 Identities=30% Similarity=0.490 Sum_probs=147.2
Q ss_pred CCCCcCceecccccceEEEEEec------CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 45777889999999999999864 478899999987666667889999999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhcCC------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEE
Q 042902 502 VLEYMPHGSLEKCLYSSN------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHL 569 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl 569 (599)
|||||++|+|.++++..+ ..++|..+..|+.|||+||+||| +++||||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLA---SQHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCccCHhhEEECCCCcEEE
Confidence 999999999999997542 35899999999999999999999 889999999999999999999999
Q ss_pred ccccCCccCCcCCCceeeecccCCccccCC
Q 042902 570 SDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 570 ~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+|||+|+.....+.........||++||||
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAP 199 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPP 199 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCH
T ss_pred CCcccceecCCCCceeecCceecChhhcCH
Confidence 999999876554443344456799999998
No 32
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=318.18 Aligned_cols=167 Identities=28% Similarity=0.466 Sum_probs=140.4
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.+++...+.||+|+||+||+|+++ ..||||+++... ....++|.+|+++|++++|||||+++|+|.+ +..+||||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence 356778899999999999999875 369999986442 3456789999999999999999999999864 56899999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
||++|+|.++++.....++|..+..|+.|||+||+||| +.+||||||||+|||+++++.+||+|||+|+........
T Consensus 112 y~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH---~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~ 188 (307)
T 3omv_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCSSSEEEETTEEEEECCCSSCBC-------
T ss_pred cCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcc
Confidence 99999999999877777999999999999999999999 889999999999999999999999999999876543333
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
......+||+.||||
T Consensus 189 ~~~~~~~GT~~ymAP 203 (307)
T 3omv_A 189 QQVEQPTGSVLWMAP 203 (307)
T ss_dssp -----CCCCTTSCCH
T ss_pred eeecccccCCCccCH
Confidence 344567899999998
No 33
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=6.8e-39 Score=323.98 Aligned_cols=168 Identities=27% Similarity=0.477 Sum_probs=139.0
Q ss_pred CCCcCceecccccceEEEEEec------CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 429 GFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
+|...+.||+|+||+||+|+++ +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..+||
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 121 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMV 121 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 4566789999999999999864 4789999999876666678899999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCC--------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEE
Q 042902 503 LEYMPHGSLEKCLYSSN--------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAH 568 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~--------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~k 568 (599)
||||++|+|.++++... ..++|.+++.|+.|||+||+||| +.+||||||||+|||+++++.+|
T Consensus 122 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLKp~NILl~~~~~~K 198 (329)
T 4aoj_A 122 FEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVK 198 (329)
T ss_dssp EECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEE
T ss_pred EEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecccccHhhEEECCCCcEE
Confidence 99999999999987532 35899999999999999999999 88999999999999999999999
Q ss_pred EccccCCccCCcCCCceeeecccCCccccCC
Q 042902 569 LSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 569 l~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+|||+|+.+...+.........||+.||||
T Consensus 199 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAP 229 (329)
T 4aoj_A 199 IGDFGMSRDIYSTDYYRVGGRTMLPIRWMPP 229 (329)
T ss_dssp ECCCC----------------CCCCGGGCCH
T ss_pred EcccccceeccCCCcceecCcccccccccCh
Confidence 9999999976554444444567899999998
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-37 Score=318.27 Aligned_cols=305 Identities=25% Similarity=0.372 Sum_probs=187.9
Q ss_pred CcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhc
Q 042902 16 IFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGN 95 (599)
Q Consensus 16 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 95 (599)
+..+++|++|++++|.++.+ + .|..+++|++|+|++|+++++++ +..+++|++|++++|.++.+ .++..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~-------~~~l~~L~~L~L~~n~i~~~--~~~~~ 108 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP-------LSNLVKLTNLYIGTNKITDI--SALQN 108 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh-------hhcCCcCCEEEccCCcccCc--hHHcC
Confidence 34556666666666666653 2 26666666666666666665442 55666666666666666643 24555
Q ss_pred ccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEE
Q 042902 96 LSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLL 175 (599)
Q Consensus 96 l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 175 (599)
++ .|+.|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 109 l~-~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 109 LT-NLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp CT-TCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CC-cCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 54 36666666666665433 6666666666666664443332 36666666666666666664332 6666666666
Q ss_pred EeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCC
Q 042902 176 DLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSG 255 (599)
Q Consensus 176 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (599)
++++|.+++..+ +..+++|+.|++++|.++.++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 666666665433 5666666666666666666544 5566666666666666665433 6666666666666666665
Q ss_pred CCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCCCCC
Q 042902 256 FIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREGPF 335 (599)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~ 335 (599)
. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++.+| ...+
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l 332 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASL 332 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGC
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhh
Confidence 3 3466666666666666666643 346666666666666666666666666666666666666666665555 3345
Q ss_pred CCcccccccCCC
Q 042902 336 RNFSAESFKGNE 347 (599)
Q Consensus 336 ~~~~~~~~~~n~ 347 (599)
..+...++.+|+
T Consensus 333 ~~L~~L~l~~N~ 344 (347)
T 4fmz_A 333 SKMDSADFANQV 344 (347)
T ss_dssp TTCSEESSSCC-
T ss_pred hccceeehhhhc
Confidence 555555555554
No 35
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.2e-38 Score=319.12 Aligned_cols=168 Identities=24% Similarity=0.390 Sum_probs=145.1
Q ss_pred CCCcCceecccccceEEEEEec------CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 429 GFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
.+...+.||+|+||+||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+++..+|
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence 3455688999999999999863 46889999997553 3446789999999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhcCC---------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc
Q 042902 502 VLEYMPHGSLEKCLYSSN---------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV 566 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~ 566 (599)
|||||++|+|.++++... ..++|..+++|+.|||+||+||| +.+||||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH---~~~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLS---SHHVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGC
T ss_pred EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCccccceEECCCCC
Confidence 999999999999996532 25899999999999999999999 889999999999999999999
Q ss_pred EEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 567 AHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 567 ~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+||+|||+|+.+...+.........||++||||
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAP 216 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAP 216 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCH
T ss_pred EEECCcccceeccCCCceeEecccccCCcccCH
Confidence 999999999976554444444567899999998
No 36
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=1.7e-38 Score=315.81 Aligned_cols=168 Identities=30% Similarity=0.452 Sum_probs=150.3
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||+||+|+.. +|+.||||++++. .....+.+.+|+++|++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 46899999999999999999975 6999999999754 2345678999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
|||+||+|.+++...+ .+++..+..|+.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+.....
T Consensus 112 Ey~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp CCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 9999999999997654 4899999999999999999999 89999999999999999999999999999997755444
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.......+||+.||||
T Consensus 188 ~~~~~~~~GTp~YmAP 203 (311)
T 4aw0_A 188 QARANSFVGTAQYVSP 203 (311)
T ss_dssp CCCBCCCCSCGGGCCH
T ss_pred cccccCcccCcccCCH
Confidence 3444567899999998
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-37 Score=341.02 Aligned_cols=329 Identities=19% Similarity=0.188 Sum_probs=290.1
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|++++|.+++..+..|.++++|++|+|++|.|+++.|..|+.+++|++|+|++|.|+.+++. .|+++++|++|+|
T Consensus 56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 130 (597)
T 3oja_B 56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH-----VFQNVPLLTVLVL 130 (597)
T ss_dssp EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEEC
T ss_pred EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH-----HHcCCCCCCEEEe
Confidence 46788888877666788899999999999999999999999999999999999999998875 5899999999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG 160 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 160 (599)
++|.|+++++..|.+++ .|+.|++++|.+++..|..|.++++|++|+|++|.+++.. +..+++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 99999988888888887 5999999999999999999999999999999999999763 5678999999999999985
Q ss_pred cCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccccc
Q 042902 161 SIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNL 240 (599)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 240 (599)
. ...++|+.|++++|.++.+.+.. .++|+.|+|++|.++.. ..+..+++|+.|+|++|.+++..|..|..+
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred c-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 3 34568999999999998664443 36899999999999985 578899999999999999999999999999
Q ss_pred ccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEc
Q 042902 241 RVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINV 320 (599)
Q Consensus 241 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 320 (599)
++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+.|++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l 352 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTL 352 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEEC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEe
Confidence 999999999999997 4677788999999999999999 57778899999999999999998653 667889999999
Q ss_pred ccccCcccCCCCCCCCCcccccccCCCCCcCCC
Q 042902 321 SFNKLEGEIPREGPFRNFSAESFKGNELLCGTP 353 (599)
Q Consensus 321 ~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 353 (599)
++|++.|..+. ..+..+....+.+++..|+.+
T Consensus 353 ~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 353 SHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred eCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 99999987543 245566666777888888864
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.6e-37 Score=327.53 Aligned_cols=319 Identities=26% Similarity=0.393 Sum_probs=215.5
Q ss_pred ccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcc
Q 042902 2 LLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFS 81 (599)
Q Consensus 2 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 81 (599)
++++|.++. +| .+..+++|++|+|++|+++++.+ |.++++|++|+|++|+++.+++ +.++++|++|+++
T Consensus 52 ~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 52 QADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-------LANLTNLTGLTLF 120 (466)
T ss_dssp ECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECC
T ss_pred ecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-------hcCCCCCCEEECC
Confidence 455666653 34 25666667777777777666543 6666667777777666665442 5566666666666
Q ss_pred cCcccccCChhhhcccccceEEEccCCcccccCC-------------------ccccCCCCCCEEEccCCcCCcccCccc
Q 042902 82 NNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIP-------------------EEISNLTNLTTIYLGGNKLNGSIPIAL 142 (599)
Q Consensus 82 ~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~-------------------~~~~~l~~L~~L~L~~N~l~~~~~~~~ 142 (599)
+|.+++..+ +..++ .|+.|++++|.+.+... ..+.++++|++|++++|.+++. ..+
T Consensus 121 ~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l 195 (466)
T 1o6v_A 121 NNQITDIDP--LKNLT-NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVL 195 (466)
T ss_dssp SSCCCCCGG--GTTCT-TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGG
T ss_pred CCCCCCChH--HcCCC-CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhh
Confidence 666665432 55554 36666666666554211 1256667777777777777654 246
Q ss_pred cCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEE
Q 042902 143 DKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYL 222 (599)
Q Consensus 143 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L 222 (599)
..+++|++|++++|.+.+..| +..+++|+.|++++|++++. ..+..+++|++|++++|.++.++. +..+++|+.|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 270 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence 677777777777777775544 66677777777777777754 356677777777777777776654 6677777778
Q ss_pred eecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCccc
Q 042902 223 NLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNIS 302 (599)
Q Consensus 223 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 302 (599)
++++|.+++..+ +..+++|+.|++++|.+++..+ ++.+++|+.|+|++|++++..| +..+++|+.|++++|.++
T Consensus 271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence 888777776544 6777778888888887776544 6777788888888888776655 677778888888888877
Q ss_pred ccCCchhhccccceEEEcccccCcccCCCCCCCCCcccccccCCCCCc
Q 042902 303 GAIPISLEKLLDLKYINVSFNKLEGEIPREGPFRNFSAESFKGNELLC 350 (599)
Q Consensus 303 ~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~~c 350 (599)
+. ..+..+++|+.|++++|++++.+| ...+..+....+.+|++..
T Consensus 345 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 345 DV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred Cc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 54 467777888888888888877776 4556666666777776544
No 39
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=3.5e-38 Score=318.37 Aligned_cols=165 Identities=27% Similarity=0.360 Sum_probs=148.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
..|+..+.||+|+||+||+|++. +|+.||||+++.......+.+.+|+++|++++|||||++++++.+++..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 45888899999999999999976 69999999997666556677899999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCcee
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLT 586 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~ 586 (599)
+||+|.+++... .+++..+..|+.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+.+..... .
T Consensus 154 ~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~ 226 (346)
T 4fih_A 154 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R 226 (346)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--C
T ss_pred CCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--c
Confidence 999999999764 3899999999999999999999 89999999999999999999999999999997644322 2
Q ss_pred eecccCCccccCC
Q 042902 587 QTQTLATIGYMAP 599 (599)
Q Consensus 587 ~~~~~gt~~y~AP 599 (599)
....+||+.||||
T Consensus 227 ~~~~~GTp~YmAP 239 (346)
T 4fih_A 227 RKSLVGTPYWMAP 239 (346)
T ss_dssp BCCCCSCGGGCCH
T ss_pred ccccccCcCcCCH
Confidence 3457899999998
No 40
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=3.8e-38 Score=318.62 Aligned_cols=167 Identities=21% Similarity=0.351 Sum_probs=141.5
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
++|+..+.||+|+||+||+|++. +|+.||||+++... ....+.|.+|+++|++++|||||++++++.+++..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 57999999999999999999975 69999999997542 3346789999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 505 YMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+||+|.+++...+ ..+++..+..|+.||+.||+||| +.+||||||||+|||++.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~- 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH---DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV- 179 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH-
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCCHHHEEECCCCCEEEcccccceeecCCc-
Confidence 999999999997554 35788899999999999999999 8999999999999999999999999999999664321
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......+||+.||||
T Consensus 180 -~~~~~~~GT~~YmAP 194 (350)
T 4b9d_A 180 -ELARACIGTPYYLSP 194 (350)
T ss_dssp -HHHHHHHSCCTTCCH
T ss_pred -ccccccCCCccccCH
Confidence 122456899999998
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-37 Score=311.97 Aligned_cols=254 Identities=34% Similarity=0.565 Sum_probs=231.1
Q ss_pred cceEEEccCCcccc--cCCccccCCCCCCEEEccC-CcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEE
Q 042902 99 SMEVFFMFNCNISG--SIPEEISNLTNLTTIYLGG-NKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLL 175 (599)
Q Consensus 99 ~l~~l~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 175 (599)
.++.|++++|++++ .+|..|.++++|++|+|++ |.+.+.+|..|..+++|++|+|++|.+++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 46667777777776 6778888889999999995 88888889899999999999999999998889999999999999
Q ss_pred EeeCCccCCCCCcccCCCCCCcEeecCCCCCC-CCCccccCCC-cccEEeecCCCccccCcccccccccccEEEccCCcc
Q 042902 176 DLGGNKLSGFVPACFGNLTSLRNLYLGSNQLT-SIPSTLWNLK-YILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNF 253 (599)
Q Consensus 176 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 253 (599)
+|++|.+++..|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|.+++..|..|..++ |+.|+|++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 99999999888999999999999999999998 7888888887 899999999999999999999887 99999999999
Q ss_pred CCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCCC
Q 042902 254 SGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPREG 333 (599)
Q Consensus 254 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~ 333 (599)
++..|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|..+
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 999999999999999999999999977666 8889999999999999999999999999999999999999999999988
Q ss_pred CCCCcccccccCCCCCcCCCC
Q 042902 334 PFRNFSAESFKGNELLCGTPN 354 (599)
Q Consensus 334 ~~~~~~~~~~~~n~~~c~~~~ 354 (599)
.+..+....+.+|++.|+.|.
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 889999999999999999873
No 42
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=320.18 Aligned_cols=165 Identities=27% Similarity=0.366 Sum_probs=148.9
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
+.|+..+.||+|+||.||+|++. +|+.||||+++.......+.+.+|+++|++++|||||++++++.+++..|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 46889999999999999999976 69999999998766566678999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCcee
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLT 586 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~ 586 (599)
+||+|.+++.... +++..+..|+.||++||+||| +.+||||||||+|||++.+|.+||+|||+|+.+..... .
T Consensus 231 ~gG~L~~~i~~~~--l~e~~~~~~~~qil~aL~ylH---~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~ 303 (423)
T 4fie_A 231 EGGALTDIVTHTR--MNEEQIAAVCLAVLQALSVLH---AQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--R 303 (423)
T ss_dssp TTEEHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--C
T ss_pred CCCcHHHHHhccC--CCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--c
Confidence 9999999997643 899999999999999999999 89999999999999999999999999999997644322 2
Q ss_pred eecccCCccccCC
Q 042902 587 QTQTLATIGYMAP 599 (599)
Q Consensus 587 ~~~~~gt~~y~AP 599 (599)
....+||+.||||
T Consensus 304 ~~~~~GTp~YmAP 316 (423)
T 4fie_A 304 RKSLVGTPYWMAP 316 (423)
T ss_dssp BCCCEECTTTCCH
T ss_pred ccccccCcCcCCH
Confidence 3457899999998
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.1e-36 Score=307.47 Aligned_cols=298 Identities=27% Similarity=0.409 Sum_probs=264.2
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|++++|+++. +| .+..+++|++|+|++|+++++.+ |..+++|++|+|++|.++.++ .+.++++|++|++
T Consensus 49 L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-------~~~~l~~L~~L~l 117 (347)
T 4fmz_A 49 LVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-------ALQNLTNLRELYL 117 (347)
T ss_dssp EECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------GGTTCTTCSEEEC
T ss_pred EEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-------HHcCCCcCCEEEC
Confidence 5788999985 44 48889999999999999998654 999999999999999998764 4899999999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG 160 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 160 (599)
++|.+++..+ +..++ .|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 118 ~~n~i~~~~~--~~~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 118 NEDNISDISP--LANLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp TTSCCCCCGG--GTTCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred cCCcccCchh--hccCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 9999997644 77776 59999999997665444 48999999999999999987654 8899999999999999986
Q ss_pred cCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccccc
Q 042902 161 SIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNL 240 (599)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 240 (599)
..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.++.++. +..+++|++|++++|.+++. ..+..+
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 543 8899999999999999997655 8899999999999999999887 88999999999999999975 578899
Q ss_pred ccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEc
Q 042902 241 RVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINV 320 (599)
Q Consensus 241 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 320 (599)
++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..| +..+++|+.|++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 340 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADF 340 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESS
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeeh
Confidence 9999999999999975 468999999999999999999999999999999999999999997766 889999999999
Q ss_pred ccccCc
Q 042902 321 SFNKLE 326 (599)
Q Consensus 321 ~~N~l~ 326 (599)
++|+++
T Consensus 341 ~~N~i~ 346 (347)
T 4fmz_A 341 ANQVIK 346 (347)
T ss_dssp SCC---
T ss_pred hhhccc
Confidence 999986
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-35 Score=317.71 Aligned_cols=314 Identities=29% Similarity=0.389 Sum_probs=205.2
Q ss_pred CCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCc
Q 042902 5 GNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNS 84 (599)
Q Consensus 5 ~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 84 (599)
.+++.+.++. ..+++++.|++++|.++.+ | .+..+++|++|+|++|.++++++ +.++++|++|++++|.
T Consensus 33 ~~~~~~~i~~--~~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 33 KTNVTDTVSQ--TDLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQ 101 (466)
T ss_dssp CSSTTSEECH--HHHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSC
T ss_pred ccccccccCh--hHhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh-------hhccccCCEEECCCCc
Confidence 3444444432 3467899999999999975 4 48999999999999999998763 7899999999999999
Q ss_pred ccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccC-------------------ccccCC
Q 042902 85 LDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIP-------------------IALDKL 145 (599)
Q Consensus 85 i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------------~~~~~l 145 (599)
+++..+ +..++ .|+.|++++|.+++..+ +.++++|++|+|++|.+++... ..+..+
T Consensus 102 l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 176 (466)
T 1o6v_A 102 IADITP--LANLT-NLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 176 (466)
T ss_dssp CCCCGG--GTTCT-TCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTC
T ss_pred cccChh--hcCCC-CCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccC
Confidence 997765 88887 59999999999997654 9999999999999999986421 113344
Q ss_pred CCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeec
Q 042902 146 QKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLS 225 (599)
Q Consensus 146 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls 225 (599)
++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ ++.+++|++|++++|.++.++ .+..+++|+.|+++
T Consensus 177 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLA 251 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECC
Confidence 5555555555555432 235555555555555555554433 445555566666666555543 34555566666666
Q ss_pred CCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccC
Q 042902 226 SNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAI 305 (599)
Q Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 305 (599)
+|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..
T Consensus 252 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 325 (466)
T 1o6v_A 252 NNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS 325 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred CCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence 666654433 5555666666666666655433 5556666666666666654433 555666666666666666544
Q ss_pred CchhhccccceEEEcccccCcccCCCCCCCCCcccccccCCCC
Q 042902 306 PISLEKLLDLKYINVSFNKLEGEIPREGPFRNFSAESFKGNEL 348 (599)
Q Consensus 306 p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 348 (599)
| +..+++|+.|++++|++++. +....+..+...++.+|+.
T Consensus 326 ~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 326 P--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred h--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCcc
Confidence 4 45566666666666666543 3333444455555555543
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.5e-36 Score=330.91 Aligned_cols=324 Identities=23% Similarity=0.226 Sum_probs=265.9
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|+|++..|.+|.++++|++|+|++|+|+++.+++|.++++|++|+|++|+|+++++. .|+++++|++|+|
T Consensus 81 L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~-----~~~~L~~L~~L~L 155 (635)
T 4g8a_A 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-----PIGHLKTLKELNV 155 (635)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTC-----CCTTCTTCCEEEC
T ss_pred EECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChh-----hhhcCcccCeecc
Confidence 68999999988888999999999999999999999889999999999999999999998875 5899999999999
Q ss_pred ccCccccc-CChhhhcccccceEEEccCCcccccCCccccCCC-------------------------------------
Q 042902 81 SNNSLDGI-LPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLT------------------------------------- 122 (599)
Q Consensus 81 s~N~i~~~-~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~------------------------------------- 122 (599)
++|.|++. .|..+..++ .|+.|++++|++++..+..|..++
T Consensus 156 s~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp CSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred ccCccccCCCchhhccch-hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 99999864 567777776 488999998888766554433221
Q ss_pred --------------------------------------------------------------------------------
Q 042902 123 -------------------------------------------------------------------------------- 122 (599)
Q Consensus 123 -------------------------------------------------------------------------------- 122 (599)
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence
Q ss_pred --------------CCCEEEccCCcCCcccCc-------------------cccCCCCCCEEEcccccccc--cCC----
Q 042902 123 --------------NLTTIYLGGNKLNGSIPI-------------------ALDKLQKLQLLSLEDNQLEG--SIP---- 163 (599)
Q Consensus 123 --------------~L~~L~L~~N~l~~~~~~-------------------~~~~l~~L~~L~L~~N~l~~--~~~---- 163 (599)
+|+.|++.+|.+....+. .+..+++|+.|++++|.+.. ..+
T Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp SCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 233344444433322111 12346788889998888753 222
Q ss_pred -------------------hhhhcCCCCcEEEeeCCccCCCC-CcccCCCCCCcEeecCCCCCCCC-CccccCCCcccEE
Q 042902 164 -------------------DDLCRLAALFLLDLGGNKLSGFV-PACFGNLTSLRNLYLGSNQLTSI-PSTLWNLKYILYL 222 (599)
Q Consensus 164 -------------------~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L 222 (599)
..+..+++|+.+++++|...... +..|..+++++.++++.|.+..+ |..+..++.|+.|
T Consensus 395 ~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L 474 (635)
T 4g8a_A 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 474 (635)
T ss_dssp SCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred hhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhh
Confidence 23445666777777766665443 45688999999999999999976 4567789999999
Q ss_pred eecCCCc-cccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcc
Q 042902 223 NLSSNSF-TGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNI 301 (599)
Q Consensus 223 ~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 301 (599)
++++|.+ .+..|..|..+++|+.|+|++|+|++..|..|+++++|++|+|++|+|++..|..|..+++|+.|+|++|+|
T Consensus 475 ~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 554 (635)
T 4g8a_A 475 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554 (635)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred hhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence 9999985 446788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhhcc-ccceEEEcccccCcccCC
Q 042902 302 SGAIPISLEKL-LDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 302 ~~~~p~~~~~l-~~L~~l~l~~N~l~~~~p 330 (599)
++..|..+..+ ++|++|++++|++.|.+.
T Consensus 555 ~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 555 MTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999988 689999999999999875
No 46
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=9.7e-37 Score=301.80 Aligned_cols=161 Identities=26% Similarity=0.381 Sum_probs=137.6
Q ss_pred CcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEc----CCeeeEEE
Q 042902 431 SENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSN----DDFKALVL 503 (599)
Q Consensus 431 ~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 503 (599)
...+.||+|+||+||+|.+. +++.||||++.... ....+.|.+|++++++++|||||++++++.+ ++..||||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 45568999999999999876 68999999996542 3345789999999999999999999999865 34689999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEccCCCCCeeec-CCCcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVP--IIHCDLKPNNVLLD-DNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~--iiH~dlk~~Nill~-~~~~~kl~DFGla~~~~~ 580 (599)
|||+||+|.+++...+ .+++..+..|+.||++||+||| +.+ ||||||||+|||++ .++.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~ylH---~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 9999999999997654 4899999999999999999999 666 99999999999998 479999999999985422
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
. .....+|||.||||
T Consensus 185 ~----~~~~~~GTp~YmAP 199 (290)
T 3fpq_A 185 S----FAKAVIGTPEFMAP 199 (290)
T ss_dssp T----SBEESCSSCCCCCG
T ss_pred C----ccCCcccCccccCH
Confidence 1 23456899999999
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-35 Score=312.19 Aligned_cols=292 Identities=18% Similarity=0.164 Sum_probs=193.2
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|+|++|++++. | .+..+++|++|+|++|+|+++ | |+.+++|++|+|++|++++++ ++++++|++|++
T Consensus 47 L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~L~~L~L 113 (457)
T 3bz5_A 47 LDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD--------VTPLTKLTYLNC 113 (457)
T ss_dssp EECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC--------CTTCTTCCEEEC
T ss_pred EEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee--------cCCCCcCCEEEC
Confidence 46677777754 4 566777777777777777764 2 677777777777777776642 566777777777
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG 160 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 160 (599)
++|+++++ | +..++ .|+.|++++|++++. .++++++|++|++++|...+.+ .+..+++|++|++++|++++
T Consensus 114 ~~N~l~~l-~--~~~l~-~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNP-LLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCSCC-C--CTTCT-TCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCCee-c--CCCCC-cCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 77777754 2 55554 477777777777764 2666777777777777443333 36667777777777777775
Q ss_pred cCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccccc
Q 042902 161 SIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNL 240 (599)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 240 (599)
. | +..+++|+.|++++|++++. .+..+++|++|++++|+++.+| +..+++|+.|++++|++++..+..+.++
T Consensus 185 l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 185 L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 3 3 66677777777777777764 2666777777777777777776 6667777777777777776655444444
Q ss_pred c-------cccEEEccCCccCCCCCccccCcccccccccccccccccCcc--------cccCCCCcccccCCCCcccccC
Q 042902 241 R-------VLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPD--------SIGGLIDLKSLDLSNNNISGAI 305 (599)
Q Consensus 241 ~-------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~ 305 (599)
. +|+.|++++|.+.+.+| ++.+++|+.|++++|+..+.+|. .++.+++|+.|++++|++++.
T Consensus 257 ~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l- 333 (457)
T 3bz5_A 257 TTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL- 333 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred CEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-
Confidence 3 44555555555554444 45667777777777766554443 244556777777777777763
Q ss_pred CchhhccccceEEEcccccCcc
Q 042902 306 PISLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 306 p~~~~~l~~L~~l~l~~N~l~~ 327 (599)
+ +..+++|+.|++++|++++
T Consensus 334 ~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 334 D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCCB
T ss_pred c--cccCCcCcEEECCCCCCCC
Confidence 2 6677777777777777775
No 48
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.4e-36 Score=297.94 Aligned_cols=164 Identities=24% Similarity=0.410 Sum_probs=132.7
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||+||+|+.. +|+.||||++++.. ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 57999999999999999999865 69999999996542 334568999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||| +|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+|||+++++.+||+|||+|+......
T Consensus 93 Ey~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~ylH---~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~- 166 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN- 166 (275)
T ss_dssp ECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTCCEEECCSSCC--------
T ss_pred eCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC-
Confidence 999 689999987754 4899999999999999999999 8999999999999999999999999999998654322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.....+||+.||||
T Consensus 167 --~~~~~~GT~~Y~AP 180 (275)
T 3hyh_A 167 --FLKTSCGSPNYAAP 180 (275)
T ss_dssp ----------CTTSCH
T ss_pred --ccCCeeECcccCCh
Confidence 23456899999998
No 49
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=1.1e-36 Score=306.47 Aligned_cols=163 Identities=25% Similarity=0.306 Sum_probs=138.9
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
+.|...++||+|+||+||+|++. +|+.||||+++.... +.+|++++++++|||||++++++.+++..|||||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence 45777789999999999999975 699999999975432 246999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC-cEEEccccCCccCCcCCCce
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM-VAHLSDFGMAKPLLKEDQSL 585 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~-~~kl~DFGla~~~~~~~~~~ 585 (599)
+||+|.++++..+ .+++..+..|+.||+.||+||| +.+||||||||+|||++.++ .+||+|||+|+.+.......
T Consensus 133 ~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~ 208 (336)
T 4g3f_A 133 EGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYLH---TRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208 (336)
T ss_dssp TTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred CCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccc
Confidence 9999999998654 4899999999999999999999 99999999999999999988 69999999999765432211
Q ss_pred ---eeecccCCccccCC
Q 042902 586 ---TQTQTLATIGYMAP 599 (599)
Q Consensus 586 ---~~~~~~gt~~y~AP 599 (599)
.....+||+.||||
T Consensus 209 ~~~~~~~~~GT~~YmAP 225 (336)
T 4g3f_A 209 SLLTGDYIPGTETHMAP 225 (336)
T ss_dssp -----CCCCCCGGGCCH
T ss_pred ceecCCccccCccccCH
Confidence 22346799999998
No 50
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=1.3e-36 Score=303.59 Aligned_cols=168 Identities=23% Similarity=0.421 Sum_probs=133.5
Q ss_pred CCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC---------
Q 042902 429 GFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--------- 497 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--------- 497 (599)
+|+..+.||+|+||+||+|++. +|+.||||+++... ....+.+.+|+++|++++|||||++++++.+.+
T Consensus 6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~ 85 (299)
T 4g31_A 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSS 85 (299)
T ss_dssp HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC---------
T ss_pred hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccC
Confidence 4888899999999999999975 69999999997543 334567999999999999999999999987544
Q ss_pred ---eeeEEEEccCCCChhhhhhcCCC--cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccc
Q 042902 498 ---FKALVLEYMPHGSLEKCLYSSNY--ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDF 572 (599)
Q Consensus 498 ---~~~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DF 572 (599)
..|+|||||++|+|.+++..... ..++..+..|+.||++||+||| +.+||||||||+|||++.++.+||+||
T Consensus 86 ~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH---~~~IiHRDlKp~NILl~~~~~vKl~DF 162 (299)
T 4g31_A 86 PKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDF 162 (299)
T ss_dssp -CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCC
T ss_pred CCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHH---HCcCccccCcHHHeEECCCCcEEEccC
Confidence 36899999999999999986543 3566778899999999999999 899999999999999999999999999
Q ss_pred cCCccCCcCCCc----------eeeecccCCccccCC
Q 042902 573 GMAKPLLKEDQS----------LTQTQTLATIGYMAP 599 (599)
Q Consensus 573 Gla~~~~~~~~~----------~~~~~~~gt~~y~AP 599 (599)
|+|+.+...... ...+..+||+.||||
T Consensus 163 Gla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAP 199 (299)
T 4g31_A 163 GLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSP 199 (299)
T ss_dssp CCC--------------------------CCCTTSCH
T ss_pred ccceecCCCccccccccccccccccCCcccCccccCH
Confidence 999876433211 112346799999999
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.5e-35 Score=301.06 Aligned_cols=287 Identities=19% Similarity=0.254 Sum_probs=180.0
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccc
Q 042902 21 KLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSM 100 (599)
Q Consensus 21 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l 100 (599)
+++.+++++|.++.+ |..+ .++|++|+|++|.++.+++. .|.++++|++|+|++|.|+++.|.+|.+++ .|
T Consensus 34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDISELRKD-----DFKGLQHLYALVLVNNKISKIHEKAFSPLR-KL 104 (332)
T ss_dssp ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCEECTT-----TTTTCTTCCEEECCSSCCCEECGGGSTTCT-TC
T ss_pred cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCCccCHh-----HhhCCCCCcEEECCCCccCccCHhHhhCcC-CC
Confidence 577777777777653 4433 25677777777777766553 467777777777777777766666666665 36
Q ss_pred eEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc--cCChhhhcCCCCcEEEee
Q 042902 101 EVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG--SIPDDLCRLAALFLLDLG 178 (599)
Q Consensus 101 ~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls 178 (599)
+.|++++|.++.. |..+. ++|++|++++|.+++..+..|.++++|++|++++|.++. ..+..+..+ +|+.|+++
T Consensus 105 ~~L~L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 6677776666633 33322 566677777777666666666666777777777776642 455556555 66666666
Q ss_pred CCccCCCCCcccCCCCCCcEeecCCCCCCCCC-ccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCC
Q 042902 179 GNKLSGFVPACFGNLTSLRNLYLGSNQLTSIP-STLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFI 257 (599)
Q Consensus 179 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (599)
+|+++++.. .+. ++|++|++++|.++.++ ..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|+++ .+
T Consensus 181 ~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l 256 (332)
T 2ft3_A 181 EAKLTGIPK-DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RV 256 (332)
T ss_dssp SSBCSSCCS-SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BC
T ss_pred CCCCCccCc-ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ec
Confidence 666665332 222 56666666666666654 45666666666666666666666666666666666666666666 44
Q ss_pred CccccCcccccccccccccccccCcccccCC------CCcccccCCCCccc--ccCCchhhccccceEEEccccc
Q 042902 258 PTTIGDLKDLQYLFLEYNRLQGSIPDSIGGL------IDLKSLDLSNNNIS--GAIPISLEKLLDLKYINVSFNK 324 (599)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~l~l~~N~ 324 (599)
|..+..+++|++|++++|++++..+..|... ..|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 5556666666666666666666555555442 45666666666665 4556666666666666666653
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.5e-35 Score=298.88 Aligned_cols=289 Identities=18% Similarity=0.245 Sum_probs=244.7
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhccccc
Q 042902 20 SKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQS 99 (599)
Q Consensus 20 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~ 99 (599)
.+++.++++++.++.+ |..+. ++|++|+|++|+|+++++. .|+++++|++|+|++|.|+++.|.+|..++ .
T Consensus 31 c~l~~l~~~~~~l~~l-p~~~~--~~l~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~ 101 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKITEIKDG-----DFKNLKNLHTLILINNKISKISPGAFAPLV-K 101 (330)
T ss_dssp EETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCCCBCTT-----TTTTCTTCCEEECCSSCCCCBCTTTTTTCT-T
T ss_pred CCCeEEEecCCCcccc-CccCC--CCCeEEECCCCcCCEeChh-----hhccCCCCCEEECCCCcCCeeCHHHhcCCC-C
Confidence 3789999999999874 55443 6889999999999988764 588899999999999999988889998887 4
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc--cCChhhhcCCCCcEEEe
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG--SIPDDLCRLAALFLLDL 177 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L 177 (599)
|+.|++++|.++.. |..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..|..+++|++|++
T Consensus 102 L~~L~Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 102 LERLYLSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCEEECCSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCEEECCCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 99999999998854 44443 789999999999998888889999999999999999964 67888999999999999
Q ss_pred eCCccCCCCCcccCCCCCCcEeecCCCCCCCC-CccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCC
Q 042902 178 GGNKLSGFVPACFGNLTSLRNLYLGSNQLTSI-PSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGF 256 (599)
Q Consensus 178 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 256 (599)
++|.++.+... +. ++|++|++++|.++.+ |..+..+++|++|++++|.+++..+..|..+++|+.|+|++|.++ .
T Consensus 179 ~~n~l~~l~~~-~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 179 ADTNITTIPQG-LP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp CSSCCCSCCSS-CC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred CCCccccCCcc-cc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 99999865433 32 7899999999999977 567888999999999999999888888999999999999999999 5
Q ss_pred CCccccCcccccccccccccccccCcccccCC------CCcccccCCCCcccc--cCCchhhccccceEEEccccc
Q 042902 257 IPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGL------IDLKSLDLSNNNISG--AIPISLEKLLDLKYINVSFNK 324 (599)
Q Consensus 257 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~l~l~~N~ 324 (599)
+|..+..+++|++|++++|++++..+..|... +.|+.|++++|++.. ..|..|..+..++.+++++|+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 67789999999999999999998887777543 788999999999864 667889999999999999985
No 53
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.7e-36 Score=304.22 Aligned_cols=167 Identities=28% Similarity=0.390 Sum_probs=134.7
Q ss_pred CCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC----eeeEEEE
Q 042902 429 GFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD----FKALVLE 504 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv~e 504 (599)
+|...+.||+|+||+||+|++ +|+.||||+++..... ...+..|+..+.+++|||||+++|+|.+++ ..|||||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~~-~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E 81 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccchh-hHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence 456678999999999999998 4899999999654321 223445666677899999999999998654 5799999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcC-----CCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFG-----YSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-----~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
||++|+|.++++... ++|..+.+++.|+++||+|+|+. ..++||||||||+|||++.++.+||+|||+|+...
T Consensus 82 y~~~gsL~~~l~~~~--l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~ 159 (303)
T 3hmm_A 82 YHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD 159 (303)
T ss_dssp CCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEE
T ss_pred CCCCCcHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCcccc
Confidence 999999999998754 89999999999999999999943 13499999999999999999999999999998764
Q ss_pred cCCCce--eeecccCCccccCC
Q 042902 580 KEDQSL--TQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~--~~~~~~gt~~y~AP 599 (599)
...... .....+||++||||
T Consensus 160 ~~~~~~~~~~~~~~GT~~ymAP 181 (303)
T 3hmm_A 160 SATDTIDIAPNHRVGTKRYMAP 181 (303)
T ss_dssp TTTTEESCC-----CCGGGCCH
T ss_pred CCCCceeeecccccccccccCH
Confidence 333221 22346799999999
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.6e-35 Score=300.87 Aligned_cols=283 Identities=25% Similarity=0.301 Sum_probs=249.8
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
+++++|+++ .+|..+. ++|++|+|++|+|+++.+.+|.++++|++|+|++|+++.+.+. .|+++++|++|+|
T Consensus 38 l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L 109 (332)
T 2ft3_A 38 VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-----AFSPLRKLQKLYI 109 (332)
T ss_dssp EECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-----GSTTCTTCCEEEC
T ss_pred EECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-----HhhCcCCCCEEEC
Confidence 467888887 6787764 6899999999999999999999999999999999999988664 6899999999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCC--cccCccccCCCCCCEEEcccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLN--GSIPIALDKLQKLQLLSLEDNQL 158 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l 158 (599)
++|.|+.+.+..+ +.|+.|++++|.+++..+..|.++++|++|++++|.++ +..+..|..+ +|++|++++|++
T Consensus 110 ~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 9999995544333 46999999999999888888999999999999999996 3778888888 999999999999
Q ss_pred cccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCccccCcccc
Q 042902 159 EGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLPLEI 237 (599)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~ 237 (599)
++ +|..+. ++|+.|++++|++++..+..|..+++|++|++++|+++.++. .+..+++|++|++++|+++ .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 96 455443 799999999999999988999999999999999999998875 7889999999999999999 677889
Q ss_pred cccccccEEEccCCccCCCCCccccCc------cccccccccccccc--ccCcccccCCCCcccccCCCCc
Q 042902 238 GNLRVLVQIDLSMNNFSGFIPTTIGDL------KDLQYLFLEYNRLQ--GSIPDSIGGLIDLKSLDLSNNN 300 (599)
Q Consensus 238 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~ 300 (599)
..+++|+.|++++|++++..+..|... .+|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999999998888877654 67999999999997 6788999999999999999985
No 55
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=2.9e-37 Score=307.05 Aligned_cols=166 Identities=25% Similarity=0.368 Sum_probs=138.2
Q ss_pred CCCCcCceecccccceEEEEEec----CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ----DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
++|+..+.||+|+||+||+|+.. +++.||||+++... .....++.+|+++|++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 46899999999999999999862 47899999996542 2234578899999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
|||||+||+|.+++...+ .+++..+..|+.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~ylH---~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 179 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH 179 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence 999999999999997654 4899999999999999999999 899999999999999999999999999999865433
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
.. .....+||+.||||
T Consensus 180 ~~--~~~~~~GT~~YmAP 195 (304)
T 3ubd_A 180 EK--KAYSFCGTVEYMAP 195 (304)
T ss_dssp -C--CCCSCCCCGGGCCH
T ss_pred Cc--cccccccCcccCCH
Confidence 22 23457899999998
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=8.5e-35 Score=296.81 Aligned_cols=270 Identities=21% Similarity=0.273 Sum_probs=231.0
Q ss_pred CCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCC
Q 042902 43 LRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLT 122 (599)
Q Consensus 43 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~ 122 (599)
..+|+.++++++.++.++.. + .++|++|+|++|+|+++.+..|.+++ .|+.|++++|.+++..|..|.+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~------~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKD------L--PPDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCS------C--CTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCT
T ss_pred cCCCeEEEecCCCccccCcc------C--CCCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCC
Confidence 34788999999999887764 2 26789999999999988888888887 499999999999988899999999
Q ss_pred CCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCC--CCCcccCCCCCCcEee
Q 042902 123 NLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSG--FVPACFGNLTSLRNLY 200 (599)
Q Consensus 123 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~ 200 (599)
+|++|+|++|.++.+.. .+. ++|++|++++|.+++..+..|..+++|++|++++|.++. ..+..|..+++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~l~~-~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 101 KLERLYLSKNQLKELPE-KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSCCSBCCS-SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCEEECCCCcCCccCh-hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 99999999999985443 332 789999999999998888889999999999999999864 6777888999999999
Q ss_pred cCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccccccc
Q 042902 201 LGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGS 280 (599)
Q Consensus 201 L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 280 (599)
+++|.++.+|..+. ++|++|++++|.+++..+..|.++++|+.|+|++|.+++..+..+..+++|++|+|++|+++ .
T Consensus 178 l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 178 IADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp CCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred CCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 99999999887665 78999999999999888888999999999999999999888888999999999999999998 6
Q ss_pred CcccccCCCCcccccCCCCcccccCCchhhc------cccceEEEcccccCcc
Q 042902 281 IPDSIGGLIDLKSLDLSNNNISGAIPISLEK------LLDLKYINVSFNKLEG 327 (599)
Q Consensus 281 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~l~l~~N~l~~ 327 (599)
+|..+..+++|++|++++|++++..+..|.. .+.++.+++++|++..
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 7778888999999999999999777777754 3678899999999864
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-35 Score=299.15 Aligned_cols=249 Identities=26% Similarity=0.431 Sum_probs=150.4
Q ss_pred CCCCEEEccCccccc--cCCccccCCCCCCEEeccC-ccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcc
Q 042902 20 SKLSRLELEMNSFYG--FIPNTFGNLRNLKRLSLNY-NYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNL 96 (599)
Q Consensus 20 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 96 (599)
.+++.|+|++|++++ .+|..|.++++|++|+|++ |.++...+. .|+++++|++|+|++|.|++..|..|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-----GGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-----hHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 456677777777766 5666677777777777763 666644432 46666677777777777766666666666
Q ss_pred cccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCC-CCCEEEcccccccccCChhhhcCCCCcEE
Q 042902 97 SQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQ-KLQLLSLEDNQLEGSIPDDLCRLAALFLL 175 (599)
Q Consensus 97 ~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 175 (599)
+ .|+.|++++|.+++..|..|.++++|++|+|++|++++.+|..+..++ +|++|+|++|++++..|..+..+. |+.|
T Consensus 125 ~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 125 K-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp T-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred C-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 5 366666666666666666666666666666666666656666666665 666666666666666666666655 6666
Q ss_pred EeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCC
Q 042902 176 DLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSG 255 (599)
Q Consensus 176 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (599)
++++|++++..|..|..+++|+.|+|++|.++..+..+..+++|++|++++|.+++..|..|..+++|+.|+|++|++++
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 66666666656666666666666666666665443334445555555555555555555555555555555555555554
Q ss_pred CCCccccCccccccccccccc
Q 042902 256 FIPTTIGDLKDLQYLFLEYNR 276 (599)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~N~ 276 (599)
.+|.. +.+++|+.|++++|+
T Consensus 283 ~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 283 EIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCS-TTGGGSCGGGTCSSS
T ss_pred cCCCC-ccccccChHHhcCCC
Confidence 44443 444455555555444
No 58
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=1.9e-36 Score=308.48 Aligned_cols=179 Identities=23% Similarity=0.389 Sum_probs=151.9
Q ss_pred ccHHHHHHHhCCCCcCceecccccceEEEEEecC------CcEEEEEEecccc-cccHHHHHHHHHHHhcCCC-CcceeE
Q 042902 418 FTHLELFQATNGFSENNLIGRGGVASVYKARIQD------GIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRH-RNLIKI 489 (599)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h-~niv~l 489 (599)
+...+++...++|+..+.||+|+||+||+|++.. ++.||||+++... ....++|.+|+++|++++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 4445555567789999999999999999998642 3689999997553 3345789999999999975 899999
Q ss_pred EEEEEcC-CeeeEEEEccCCCChhhhhhcCC---------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcc
Q 042902 490 ISSCSND-DFKALVLEYMPHGSLEKCLYSSN---------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCD 553 (599)
Q Consensus 490 ~~~~~~~-~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~d 553 (599)
+|+|.++ +..+||||||++|+|.++++... ..+++..+..|+.|||+||+||| +.+|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH---~~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHh---hCCeecCc
Confidence 9999764 57899999999999999997532 24789999999999999999999 89999999
Q ss_pred CCCCCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 554 LKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 554 lk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|||+|||+++++.+||+|||+|+.+.............||+.||||
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAP 256 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 256 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCH
Confidence 9999999999999999999999977655544455567899999998
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.6e-34 Score=304.36 Aligned_cols=308 Identities=20% Similarity=0.195 Sum_probs=264.4
Q ss_pred cCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCccc
Q 042902 7 NFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLD 86 (599)
Q Consensus 7 ~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~ 86 (599)
...+..+..+.++++|++|+|++|+|+++ | .|..+++|++|+|++|++++++ ++.+++|++|++++|.|+
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--------~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--------LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCS
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--------cccCCCCCEEECcCCCCc
Confidence 34455566788899999999999999986 5 6999999999999999999863 678999999999999999
Q ss_pred ccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhh
Q 042902 87 GILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDL 166 (599)
Q Consensus 87 ~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 166 (599)
++ + +..++ .|+.|++++|++++. + ++++++|++|++++|+++++ .+..+++|++|++++|...+.+ .+
T Consensus 99 ~~-~--~~~l~-~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 99 NL-D--VTPLT-KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp CC-C--CTTCT-TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CC
T ss_pred ee-e--cCCCC-cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--cc
Confidence 76 3 77776 599999999999985 3 89999999999999999985 3889999999999999655444 48
Q ss_pred hcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEE
Q 042902 167 CRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQI 246 (599)
Q Consensus 167 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 246 (599)
..+++|+.|++++|+++++ | +..+++|+.|++++|.++.++ +..+++|++|++++|++++ +| +..+++|+.|
T Consensus 167 ~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred ccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 8899999999999999985 3 889999999999999999984 7889999999999999998 44 8899999999
Q ss_pred EccCCccCCCCCccccCcc-------cccccccccccccccCcccccCCCCcccccCCCCcccccCCch--------hhc
Q 042902 247 DLSMNNFSGFIPTTIGDLK-------DLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPIS--------LEK 311 (599)
Q Consensus 247 ~Ls~N~l~~~~~~~~~~l~-------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~--------~~~ 311 (599)
++++|++++..+..+..++ +|+.|++++|++.+.+| ++.+++|+.|++++|...+.+|.. +..
T Consensus 239 ~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred EeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 9999999998777777666 67888888888777776 578899999999999977766643 556
Q ss_pred cccceEEEcccccCcccCCCCCCCCCcccccccCCCC
Q 042902 312 LLDLKYINVSFNKLEGEIPREGPFRNFSAESFKGNEL 348 (599)
Q Consensus 312 l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~~~~n~~ 348 (599)
+++|+.|++++|++++. + .+.+..+...++.+|..
T Consensus 317 ~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCC
T ss_pred cccCCEEECCCCccccc-c-cccCCcCcEEECCCCCC
Confidence 68999999999999984 3 45567777777888764
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.9e-33 Score=294.25 Aligned_cols=260 Identities=28% Similarity=0.360 Sum_probs=145.1
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhccccc
Q 042902 20 SKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQS 99 (599)
Q Consensus 20 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~ 99 (599)
++|++|++++|+++++. .. .++|++|+|++|++++++ .|+++++|++|++++|++++ +|..+ ..
T Consensus 111 ~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~n~l~~lp-------~~~~l~~L~~L~l~~N~l~~-lp~~~----~~ 174 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALS-DL---PPLLEYLGVSNNQLEKLP-------ELQNSSFLKIIDVDNNSLKK-LPDLP----PS 174 (454)
T ss_dssp TTCCEEECCSSCCSCCC-SC---CTTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSC-CCCCC----TT
T ss_pred CCCcEEECCCCccCccc-CC---CCCCCEEECcCCCCCCCc-------ccCCCCCCCEEECCCCcCcc-cCCCc----cc
Confidence 34455555555444421 11 145666666666665543 25666667777777776664 23222 24
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
|+.|++++|++++ +| .|.++++|++|++++|+++++ |.. .++|++|++++|.++ .+| .+..+++|++|++++
T Consensus 175 L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 175 LEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred ccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCC
Confidence 6666777776665 33 466677777777777766642 222 246667777777666 344 366677777777777
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCc
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPT 259 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 259 (599)
|+++++ |.. +++|+.|++++|+++.+|.. +++|++|++++|.+++... . .++|+.|++++|.+++. +
T Consensus 247 N~l~~l-~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~-~---~~~L~~L~l~~N~l~~i-~- 313 (454)
T 1jl5_A 247 NLLKTL-PDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSE-L---PPNLYYLNASSNEIRSL-C- 313 (454)
T ss_dssp SCCSSC-CSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESC-C---CTTCCEEECCSSCCSEE-C-
T ss_pred CcCCcc-ccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccC-c---CCcCCEEECcCCcCCcc-c-
Confidence 777653 222 35666777777766666653 2556666666666665211 0 13445555555544431 1
Q ss_pred cccCc-ccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcc
Q 042902 260 TIGDL-KDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 260 ~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 327 (599)
.+ ++|++|++++|++++ +|.. +++|+.|++++|++++ +|. .+++|++|++++|++++
T Consensus 314 ---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 314 ---DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS
T ss_pred ---CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCc
Confidence 12 356666666666664 3332 3556666666666663 443 34566666666666665
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-33 Score=299.02 Aligned_cols=247 Identities=25% Similarity=0.295 Sum_probs=119.0
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCC-------------CEEeccCccCcccCCCccccc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNL-------------KRLSLNYNYLTSSTPKLNFLS 67 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L-------------~~L~L~~N~l~~~~~~~~~~~ 67 (599)
|++++|++ +.+|.+++++++|++|++++|++++..|.+++++++| ++|++++|.+++++..
T Consensus 16 L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----- 89 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----- 89 (454)
T ss_dssp -------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-----
T ss_pred hhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-----
Confidence 57889999 7899999999999999999999999899999888764 8888888888776541
Q ss_pred ccCCCCCCcEEEcccCcccccCChhhh----------------cccccceEEEccCCcccccCCccccCCCCCCEEEccC
Q 042902 68 SLSNCKYLKYLSFSNNSLDGILPRAIG----------------NLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGG 131 (599)
Q Consensus 68 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~----------------~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 131 (599)
.++|++|++++|.+++ +|..+. .++..++.|++++|++++ +| .|+++++|++|++++
T Consensus 90 ----~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 ----PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp ----CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred ----cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 2456666666666654 232210 111234445555554443 23 344555555555555
Q ss_pred CcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc
Q 042902 132 NKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS 211 (599)
Q Consensus 132 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~ 211 (599)
|++++ +|.. .++|++|++++|++++ +| .+..+++|+.|++++|+++++ |.. .++|++|++++|.++.+|.
T Consensus 163 N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~~lp~ 232 (454)
T 1jl5_A 163 NSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILEELPE 232 (454)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSSCCC
T ss_pred CcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCCcccc
Confidence 55443 2221 1344555555555443 22 344455555555555555432 211 1344555555555554442
Q ss_pred cccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccc
Q 042902 212 TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQG 279 (599)
Q Consensus 212 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 279 (599)
+..+++|++|++++|++++. |.. +++|+.|++++|.+++. |.. +++|++|++++|++++
T Consensus 233 -~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLKTL-PDL---PPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSSC-CSC---CTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSE
T ss_pred -cCCCCCCCEEECCCCcCCcc-ccc---ccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCc
Confidence 44455555555555555432 211 23444455555544432 221 2445555555555543
No 62
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=293.51 Aligned_cols=167 Identities=29% Similarity=0.399 Sum_probs=141.8
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEc------CCe
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSN------DDF 498 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~ 498 (599)
++|+..+.||+|+||+||+|++. +|+.||||+++... ....+.+.+|+++|++++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57899999999999999999975 69999999996543 2345678999999999999999999998764 357
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.|||||||+ |+|.+++...+ .+++..+..|+.||+.||.||| +.+||||||||+|||++.++.+||+|||+|+.+
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~ylH---~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~ 208 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYMH---SAQVIHRDLKPSNLLVNENCELKIGDFGMARGL 208 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC
T ss_pred EEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCcCCCcCccccccCCCCCEEEeecceeeec
Confidence 899999996 68999987654 5899999999999999999999 899999999999999999999999999999876
Q ss_pred CcCC--CceeeecccCCccccCC
Q 042902 579 LKED--QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~--~~~~~~~~~gt~~y~AP 599 (599)
.... ........+||+.||||
T Consensus 209 ~~~~~~~~~~~~~~~GT~~Y~AP 231 (398)
T 4b99_A 209 CTSPAEHQYFMTEYVATRWYRAP 231 (398)
T ss_dssp -------CCCCCSSCCCCTTCCH
T ss_pred ccCccccccccccceeChHhcCH
Confidence 4322 11233567899999998
No 63
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=3.8e-33 Score=301.41 Aligned_cols=164 Identities=26% Similarity=0.359 Sum_probs=141.2
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHH---HHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDI---ECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~---e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
++|+..+.||+|+||+||+|+.. +|+.||||++++.. ........+ ++.+++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 56889999999999999999976 69999999996432 222233333 466777889999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+|||||+||+|.+++...+ .+++..+..|+.||+.||+||| +.+||||||||+|||++.+|.+||+|||+|+.+..
T Consensus 269 lVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yLH---~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~ 344 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK 344 (689)
T ss_dssp EEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred EEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCchHHeEEeCCCCEEecccceeeecCC
Confidence 9999999999999998654 4899999999999999999999 99999999999999999999999999999987643
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
.. ....+||+.||||
T Consensus 345 ~~----~~t~~GTp~YmAP 359 (689)
T 3v5w_A 345 KK----PHASVGTHGYMAP 359 (689)
T ss_dssp CC----CCSCCSCGGGCCH
T ss_pred CC----CCCccCCcCccCH
Confidence 22 2346899999999
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.3e-33 Score=286.26 Aligned_cols=283 Identities=18% Similarity=0.208 Sum_probs=174.4
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccc
Q 042902 19 ASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQ 98 (599)
Q Consensus 19 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 98 (599)
++.....++++|+++.+ |..+. ++|++|+|++|+++.+++. .|.++++|++|+|++|.|+++.|.+|.+++
T Consensus 30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~- 100 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNS-----DLQRCVNLQALVLTSNGINTIEEDSFSSLG- 100 (353)
T ss_dssp ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECTTSCCCEECTTTTTTCT-
T ss_pred CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHH-----HhccCCCCCEEECCCCccCccCHhhcCCCC-
Confidence 34455577777777764 33333 4677777777777776653 467777777777777777766666666665
Q ss_pred cceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccC-ccccCCCCCCEEEcccc-cccccCChhhhcCCCCcEEE
Q 042902 99 SMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIP-IALDKLQKLQLLSLEDN-QLEGSIPDDLCRLAALFLLD 176 (599)
Q Consensus 99 ~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 176 (599)
.|+.|++++|++++..+..|.++++|++|+|++|+++++.+ ..|..+++|++|++++| .+....+..|..+++|++|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 36666666666665555556666666666666666664444 35666666666666666 35555555666666666666
Q ss_pred eeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCcccc-CCCcccEEeecCCCccccCcccccccccccEEEccCCccCC
Q 042902 177 LGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLW-NLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSG 255 (599)
Q Consensus 177 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (599)
+++|++++..|..|..+++|++|++++|.++.+|..+. .+++|+.|++++|.+++..+..+..
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------- 244 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------- 244 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc----------------
Confidence 66666666556666666666666666666655554322 3455555555555555433322211
Q ss_pred CCCccccCcccccccccccccccc----cCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCC
Q 042902 256 FIPTTIGDLKDLQYLFLEYNRLQG----SIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 256 ~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 331 (599)
......++.++|++|.+++ .+|..+..+++|+.|+|++|+++...+..|..+++|++|++++|++.|.+|.
T Consensus 245 -----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 245 -----GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp -------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred -----ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 1122334444444444443 4567788888888888888888844444467888888888888888887763
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=285.53 Aligned_cols=276 Identities=18% Similarity=0.156 Sum_probs=220.7
Q ss_pred ccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcc
Q 042902 2 LLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFS 81 (599)
Q Consensus 2 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 81 (599)
++++|+++ .+|..+. ++|++|+|++|+|+++.+..|.++++|++|+|++|+++++++. .|.++++|++|+|+
T Consensus 37 ~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 37 KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-----SFSSLGSLEHLDLS 108 (353)
T ss_dssp ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEECC
T ss_pred eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-----hcCCCCCCCEEECC
Confidence 56788888 6677665 4899999999999998888999999999999999999998765 68999999999999
Q ss_pred cCcccccCChhhhcccccceEEEccCCcccccCC-ccccCCCCCCEEEccCC-cCCcccCccccCCCCCCEEEccccccc
Q 042902 82 NNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIP-EEISNLTNLTTIYLGGN-KLNGSIPIALDKLQKLQLLSLEDNQLE 159 (599)
Q Consensus 82 ~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 159 (599)
+|+|+++.+..|.+++ .|+.|++++|++++..+ ..|.++++|++|++++| .++...+..|.++++|++|++++|.+.
T Consensus 109 ~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCSSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcCCcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 9999988777788887 59999999999997665 58999999999999999 588888889999999999999999999
Q ss_pred ccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-ccc---CCCcccEEeecCCCccccCcc
Q 042902 160 GSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLW---NLKYILYLNLSSNSFTGPLPL 235 (599)
Q Consensus 160 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~---~l~~L~~L~Ls~N~l~~~~~~ 235 (599)
+..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.++.++. .+. ....++.++++++.+++
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~---- 263 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD---- 263 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH----
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC----
Confidence 9999999999999999999999987665566678999999999999998753 221 23344555555554443
Q ss_pred cccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCC
Q 042902 236 EIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIP 306 (599)
Q Consensus 236 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 306 (599)
|.+. .+|..+..+++|++|+|++|+++...+..|..+++|++|+|++|++++..|
T Consensus 264 ---------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ---------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ---------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ---------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1111 234556666666666666666664433445677777777777777775443
No 66
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=6.3e-33 Score=284.47 Aligned_cols=145 Identities=26% Similarity=0.347 Sum_probs=129.5
Q ss_pred HhCCCCcCceecccccceEEEEEec----CCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeee
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ----DGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 500 (599)
..+.|+..+.||+|+||+||+|+.+ +++.||||++.... ...++.+|+++|+.+ +|||||++++++.+.+..|
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~ 96 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV 96 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence 3578999999999999999999853 46889999986543 346788999999988 6999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC-CcEEEccccCCccCC
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN-MVAHLSDFGMAKPLL 579 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~-~~~kl~DFGla~~~~ 579 (599)
+|||||++|+|.+++.. +++.++..++.||++||+||| +.+|+||||||+|||++.+ +.+||+|||+|+...
T Consensus 97 lvmE~~~g~~L~~~~~~----l~~~~~~~~~~qll~al~ylH---~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~ 169 (361)
T 4f9c_A 97 IAMPYLEHESFLDILNS----LSFQEVREYMLNLFKALKRIH---QFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH 169 (361)
T ss_dssp EEEECCCCCCHHHHHTT----CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred EEEeCCCcccHHHHHcC----CCHHHHHHHHHHHHHHHHHHH---HCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence 99999999999998843 788899999999999999999 8999999999999999876 799999999998653
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=4.6e-32 Score=273.47 Aligned_cols=275 Identities=21% Similarity=0.251 Sum_probs=146.3
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccC--Chhhhcccccc
Q 042902 23 SRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGIL--PRAIGNLSQSM 100 (599)
Q Consensus 23 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~--~~~~~~l~~~l 100 (599)
+.++.+++.++.+ |..+ .++|++|+|++|+++.++.. .|.++++|++|+|++|.|+... +..+.
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------ 75 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHG-----VFDKLTQLTKLSLSSNGLSFKGCCSQSDF------ 75 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCEEEEEEHHHH------
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHh-----HhhccccCCEEECCCCccCcccCcccccc------
Confidence 4677777777764 3333 25677777777777776654 4677777777777777776321 33333
Q ss_pred eEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCC-hhhhcCCCCcEEEeeC
Q 042902 101 EVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIP-DDLCRLAALFLLDLGG 179 (599)
Q Consensus 101 ~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~ 179 (599)
++++|++|+|++|.+.. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 76 -------------------~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 135 (306)
T 2z66_A 76 -------------------GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135 (306)
T ss_dssp -------------------SCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT
T ss_pred -------------------cccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC
Confidence 33444444444444442 22334444444444444444443332 3344444444444444
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCC--CCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCC
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTS--IPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFI 257 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (599)
|.+++..+..|..+++|++|++++|.++. +|..+..+++|++|++++|.+++..|..|..+++|+.|+|++|.+++..
T Consensus 136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 44444444444455555555555555543 3444555555555555555555555555555555555555555555555
Q ss_pred CccccCcccccccccccccccccCcccccCCC-CcccccCCCCcccccCCc-h-hhccccceEEEcccccCcccCCC
Q 042902 258 PTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLI-DLKSLDLSNNNISGAIPI-S-LEKLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~p~-~-~~~l~~L~~l~l~~N~l~~~~p~ 331 (599)
+..+..+++|++|+|++|++++..|..+..++ +|+.|+|++|++++..+. . ...+...+.+.+..+.+.|..|.
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 55555555666666666666555555555553 566666666666543221 1 11223333444555566665554
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=2.4e-32 Score=275.63 Aligned_cols=279 Identities=23% Similarity=0.271 Sum_probs=170.8
Q ss_pred ccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcc
Q 042902 2 LLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFS 81 (599)
Q Consensus 2 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 81 (599)
+.++++++ .+|..+. ++|++|+|++|+++++.++.|.++++|++|+|++|+++..... ...+..+++|++|+|+
T Consensus 13 ~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 13 RCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---SQSDFGTTSLKYLDLS 86 (306)
T ss_dssp ECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE---EHHHHSCSCCCEEECC
T ss_pred EcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc---ccccccccccCEEECC
Confidence 56777777 5676664 6899999999999998888899999999999999999865311 1246678999999999
Q ss_pred cCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccC-ccccCCCCCCEEEcccccccc
Q 042902 82 NNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIP-IALDKLQKLQLLSLEDNQLEG 160 (599)
Q Consensus 82 ~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 160 (599)
+|.++. +|..+. ++++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~-------------------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 87 FNGVIT-MSSNFL-------------------------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp SCSEEE-EEEEEE-------------------------TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred CCcccc-ChhhcC-------------------------CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 999874 333344 44455555555555544333 344555555555555555554
Q ss_pred cCChhhhcCCCCcEEEeeCCccCC-CCCcccCCCCCCcEeecCCCCCCCC-CccccCCCcccEEeecCCCccccCccccc
Q 042902 161 SIPDDLCRLAALFLLDLGGNKLSG-FVPACFGNLTSLRNLYLGSNQLTSI-PSTLWNLKYILYLNLSSNSFTGPLPLEIG 238 (599)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 238 (599)
..+..|..+++|++|++++|.+++ ..|..|..+++|++|++++|.++.+ |..+..+++|++|++++|.+++..+..|.
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 445555555555555555555543 3444555555555555555555544 33455555555555555555555555555
Q ss_pred ccccccEEEccCCccCCCCCccccCcc-cccccccccccccccCc--ccccCCCCcccccCCCCcccccCCchhhcc
Q 042902 239 NLRVLVQIDLSMNNFSGFIPTTIGDLK-DLQYLFLEYNRLQGSIP--DSIGGLIDLKSLDLSNNNISGAIPISLEKL 312 (599)
Q Consensus 239 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 312 (599)
.+++|+.|+|++|.+++..|..+..++ +|++|+|++|++++..+ .....+...+.+.+..+.+....|..+.+.
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 566666666666666655555565553 56666666666654321 112223344555566666666666666554
No 69
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.98 E-value=1.5e-32 Score=298.53 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=149.0
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
++|+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+++|+.++|||||++++++.+++..|+|||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 57899999999999999999975 69999999997666556678999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC--CcEEEccccCCccCCcCCCc
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN--MVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~--~~~kl~DFGla~~~~~~~~~ 584 (599)
+||+|.+++......+++..+..|+.||++||.||| +.+|+||||||+|||++.+ +.+||+|||+|+.+....
T Consensus 237 ~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH---~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~-- 311 (573)
T 3uto_A 237 SGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-- 311 (573)
T ss_dssp CCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS--
T ss_pred CCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC--
Confidence 999999999776667899999999999999999999 8999999999999999854 799999999999775432
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.....+||+.||||
T Consensus 312 -~~~~~~GT~~y~AP 325 (573)
T 3uto_A 312 -SVKVTTGTAEFAAP 325 (573)
T ss_dssp -EEEEECSSGGGCCH
T ss_pred -ceeeeEECccccCH
Confidence 23456899999998
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.98 E-value=2.3e-31 Score=282.34 Aligned_cols=248 Identities=23% Similarity=0.239 Sum_probs=177.9
Q ss_pred CCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCC
Q 042902 45 NLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNL 124 (599)
Q Consensus 45 ~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L 124 (599)
+.+.++.+++.++.+|..+ .++++.|+|++|+|+.+.+.+|.+++ .|+.|++++|.|+++.+..|.++++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGI--------STNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp TSCEEECCSCCCSSCCSCC--------CTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCCEEEeCCCCcCcCCCCC--------CCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccC
Confidence 3556777777777666532 14677777777777766666666665 36677777777766666777777778
Q ss_pred CEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC-CccCCCCCcccCCCCCCcEeecCC
Q 042902 125 TTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG-NKLSGFVPACFGNLTSLRNLYLGS 203 (599)
Q Consensus 125 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~ 203 (599)
++|+|++|+|+.+.+..|..+++|++|+|++|.|+...+..|..+++|+.|+|++ |.+..+.+..|.++++|++|+|++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 8888888887777767777778888888888887777667777777888888877 455555556777778888888888
Q ss_pred CCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcc
Q 042902 204 NQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPD 283 (599)
Q Consensus 204 N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 283 (599)
|.++.+|. +..+++|+.|+|++|.+++..|..|.++++|+.|+|++|.+++..+..|.++++|++|+|++|++++..+.
T Consensus 195 n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 195 CNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp SCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred CcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 88777763 66677777777777777777677777777777777777777776677777777777777777777766666
Q ss_pred cccCCCCcccccCCCCccc
Q 042902 284 SIGGLIDLKSLDLSNNNIS 302 (599)
Q Consensus 284 ~~~~l~~L~~L~L~~N~l~ 302 (599)
.|..+++|+.|+|++|++.
T Consensus 274 ~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEcCCCCcc
Confidence 6666777777777777665
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.5e-31 Score=283.16 Aligned_cols=249 Identities=24% Similarity=0.236 Sum_probs=179.3
Q ss_pred CCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCC
Q 042902 45 NLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNL 124 (599)
Q Consensus 45 ~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L 124 (599)
+...++.+++.++.+|..+ .++|++|+|++|+|+++.+..|.+++ .|+.|++++|+|+++.+..|.++++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~--------~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI--------PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC--------CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCcEEEECCCCcCccCCCC--------CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccC
Confidence 3466777777777766532 14677777777777777777777765 37777777777777777777777777
Q ss_pred CEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC-CccCCCCCcccCCCCCCcEeecCC
Q 042902 125 TTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG-NKLSGFVPACFGNLTSLRNLYLGS 203 (599)
Q Consensus 125 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~ 203 (599)
++|+|++|+|+.+.+..|..+++|++|+|++|+|+.+.+..|..+++|+.|++++ |.+..+.+..|.++++|++|+|++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 7777777777777777777777777777777777766666777777777777777 455555555677777777777777
Q ss_pred CCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcc
Q 042902 204 NQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPD 283 (599)
Q Consensus 204 N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 283 (599)
|+++.+| .+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+.
T Consensus 206 n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 206 CNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp SCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred Ccccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 7777775 356677777777777777777777777777777777777777777677777777777777777777766666
Q ss_pred cccCCCCcccccCCCCcccc
Q 042902 284 SIGGLIDLKSLDLSNNNISG 303 (599)
Q Consensus 284 ~~~~l~~L~~L~L~~N~l~~ 303 (599)
.|..+++|+.|+|++|++..
T Consensus 285 ~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SSTTCTTCCEEECCSSCEEC
T ss_pred HhccccCCCEEEccCCCcCC
Confidence 66777777777777777653
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.8e-31 Score=284.16 Aligned_cols=251 Identities=22% Similarity=0.260 Sum_probs=232.2
Q ss_pred CCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEc
Q 042902 74 YLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSL 153 (599)
Q Consensus 74 ~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 153 (599)
..+.++.+++.++.+ |.. ++..++.|++++|+|+++.+..|.++++|++|+|++|.|+++.+.+|.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~i-P~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEV-PQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSC-CSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCcc-CCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 467899999999854 443 3457999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCC-CCCCCCCc-cccCCCcccEEeecCCCccc
Q 042902 154 EDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGS-NQLTSIPS-TLWNLKYILYLNLSSNSFTG 231 (599)
Q Consensus 154 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~ 231 (599)
++|+|+...+..|..+++|++|+|++|+++.+.+..|..+++|++|++++ |.+..+|. .+.++++|++|+|++|++++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 99999988888899999999999999999998888999999999999999 67778876 67889999999999999996
Q ss_pred cCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhc
Q 042902 232 PLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEK 311 (599)
Q Consensus 232 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 311 (599)
. ..+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus 211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 5 35889999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred cccceEEEcccccCcccCC
Q 042902 312 LLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 312 l~~L~~l~l~~N~l~~~~p 330 (599)
+++|+.|++++|++.|...
T Consensus 289 l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CTTCCEEECCSSCEECSTT
T ss_pred ccCCCEEEccCCCcCCCCC
Confidence 9999999999999998765
No 73
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.7e-35 Score=310.74 Aligned_cols=322 Identities=17% Similarity=0.149 Sum_probs=171.8
Q ss_pred CccCCCcCccCCCCC-CcCCCCCCEEEccCcccccc----CCccccCCCCCCEEeccCccCcccCCCcccccccCCCC--
Q 042902 1 LLLWGNNFSGTIPSF-IFNASKLSRLELEMNSFYGF----IPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCK-- 73 (599)
Q Consensus 1 L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~-- 73 (599)
|+|++|+++...... +..+++|++|+|++|++++. ++..|..+++|++|+|++|.+++..... .+..++
T Consensus 8 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~----l~~~l~~~ 83 (461)
T 1z7x_W 8 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC----VLQGLQTP 83 (461)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH----HHHTTCST
T ss_pred hhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH----HHHHHhhC
Confidence 456666665443332 55566677777777766632 3455666666777777776665432210 112222
Q ss_pred --CCcEEEcccCcccc----cCChhhhcccccceEEEccCCcccccCCcccc-----CCCCCCEEEccCCcCCccc----
Q 042902 74 --YLKYLSFSNNSLDG----ILPRAIGNLSQSMEVFFMFNCNISGSIPEEIS-----NLTNLTTIYLGGNKLNGSI---- 138 (599)
Q Consensus 74 --~L~~L~Ls~N~i~~----~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~---- 138 (599)
+|++|+|++|.|+. .++.++..++ .|+.|++++|.+++..+..+. ..++|++|+|++|.+++..
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 56666666666663 3355555555 466666666666544333322 2445666666666665422
Q ss_pred CccccCCCCCCEEEcccccccccCChhhhc-----CCCCcEEEeeCCccCCC----CCcccCCCCCCcEeecCCCCCCCC
Q 042902 139 PIALDKLQKLQLLSLEDNQLEGSIPDDLCR-----LAALFLLDLGGNKLSGF----VPACFGNLTSLRNLYLGSNQLTSI 209 (599)
Q Consensus 139 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~i 209 (599)
+..+..+++|++|+|++|.+.+..+..+.. .++|++|++++|.+++. .+..+..+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 334455566666666666665443333322 44666666666666543 244445556666666666665532
Q ss_pred ------CccccCCCcccEEeecCCCcccc----CcccccccccccEEEccCCccCCCCCccccCc-----cccccccccc
Q 042902 210 ------PSTLWNLKYILYLNLSSNSFTGP----LPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDL-----KDLQYLFLEY 274 (599)
Q Consensus 210 ------p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~ 274 (599)
+..+..+++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+... ++|++|+|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 11122355566666666666543 34444555666666666666554333333221 4566666666
Q ss_pred cccccc----CcccccCCCCcccccCCCCcccccCCchhhc-----cccceEEEcccccCcc
Q 042902 275 NRLQGS----IPDSIGGLIDLKSLDLSNNNISGAIPISLEK-----LLDLKYINVSFNKLEG 327 (599)
Q Consensus 275 N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~l~l~~N~l~~ 327 (599)
|.+++. ++..+..+++|++|+|++|.+++..+..+.. .++|+.|++++|++++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 665543 3344445556666666666655444443332 3456666666665553
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=281.79 Aligned_cols=251 Identities=24% Similarity=0.279 Sum_probs=231.5
Q ss_pred CCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEc
Q 042902 74 YLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSL 153 (599)
Q Consensus 74 ~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 153 (599)
..+.++.+++.++.+ |..+ +..++.|++++|+|+++.+..|.++++|++|+|++|.|+++.+.+|.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~~i-P~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-PDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSC-CSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcC-CCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 467899999999854 4433 356899999999999999999999999999999999999998899999999999999
Q ss_pred ccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCC-CCCCCCCc-cccCCCcccEEeecCCCccc
Q 042902 154 EDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGS-NQLTSIPS-TLWNLKYILYLNLSSNSFTG 231 (599)
Q Consensus 154 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~ 231 (599)
++|+|+.+.+..|..+++|++|+|++|+++.+.+..|..+++|++|+|++ |.+..++. .+.++++|++|+|++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 99999988888899999999999999999998888999999999999999 66777776 68889999999999999995
Q ss_pred cCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhc
Q 042902 232 PLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEK 311 (599)
Q Consensus 232 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 311 (599)
. | .+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 4 4 5889999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred cccceEEEcccccCcccCC
Q 042902 312 LLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 312 l~~L~~l~l~~N~l~~~~p 330 (599)
+++|+.|++++|++.|...
T Consensus 278 l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CTTCCEEECCSSCEECSST
T ss_pred ccCCCEEEcCCCCccCCCC
Confidence 9999999999999998764
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=3.2e-31 Score=264.51 Aligned_cols=267 Identities=24% Similarity=0.256 Sum_probs=196.2
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceE
Q 042902 23 SRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEV 102 (599)
Q Consensus 23 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~ 102 (599)
++++.+++.++.+ |..+ .++|++|+|++|.++.+++. .|..+++|++|+|++|.|+++.|.+|..++ .|+.
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAA-----SFRACRNLTILWLHSNVLARIDAAAFTGLA-LLEQ 84 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTT-----TTTTCTTCCEEECCSSCCCEECTTTTTTCT-TCCE
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHH-----HcccCCCCCEEECCCCccceeCHhhcCCcc-CCCE
Confidence 5667777777654 3322 35677777777777766654 466777777777777777766677777665 4777
Q ss_pred EEccCCc-ccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCc
Q 042902 103 FFMFNCN-ISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNK 181 (599)
Q Consensus 103 l~l~~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (599)
|++++|. +....|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 7777775 666667778888888888888888887777788888888888888888887777778888888888888888
Q ss_pred cCCCCCcccCCCCCCcEeecCCCCCCCC-CccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCcc
Q 042902 182 LSGFVPACFGNLTSLRNLYLGSNQLTSI-PSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTT 260 (599)
Q Consensus 182 l~~~~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 260 (599)
++++.+..|..+++|++|++++|.++.+ |..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|++....+.
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~- 243 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA- 243 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-
Confidence 8877777788888888888888888866 66777888888888888888877777788888888888888888753222
Q ss_pred ccCcccccccccccccccccCcccccC--CCCcccccCCCC
Q 042902 261 IGDLKDLQYLFLEYNRLQGSIPDSIGG--LIDLKSLDLSNN 299 (599)
Q Consensus 261 ~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N 299 (599)
..-...++.+..+.+.+....|..+.+ +..++..++.++
T Consensus 244 ~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 122345677777888888777777654 344555555443
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.6e-31 Score=265.18 Aligned_cols=232 Identities=25% Similarity=0.289 Sum_probs=152.9
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEccccc-ccccCChhhhcCCCCcEEEee
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQ-LEGSIPDDLCRLAALFLLDLG 178 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls 178 (599)
++.|++++|++++..+..|.++++|++|+|++|.++++.|.+|..+++|++|+|++|. +....|..|..+++|++|+++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~ 113 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence 4444444444444444555566666666666666666656666666666666666665 555556666666666666666
Q ss_pred CCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCC
Q 042902 179 GNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFI 257 (599)
Q Consensus 179 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 257 (599)
+|++++..+..|..+++|++|++++|.++.+|. .+..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..
T Consensus 114 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC
Confidence 666666666666666777777777777766654 3556667777777777777666666777777777777777777777
Q ss_pred CccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCC
Q 042902 258 PTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPRE 332 (599)
Q Consensus 258 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 332 (599)
|..|..+++|++|++++|++++..+..+..+++|+.|++++|+++...+.. .-+..++.+..+.|.+.|..|..
T Consensus 194 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 777777777777777777777766667777777888888888777543322 22234555567777777777753
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.97 E-value=1e-32 Score=279.57 Aligned_cols=267 Identities=18% Similarity=0.141 Sum_probs=145.1
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceE
Q 042902 23 SRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEV 102 (599)
Q Consensus 23 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~ 102 (599)
+.++++.+.+.......+..+++|++|+|++|+++.+++. .|.++++|++|+|++|.|++..+ |..++ .|+.
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~ 84 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA-----DLAPFTKLELLNLSSNVLYETLD--LESLS-TLRT 84 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHH-----HHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCE
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHH-----HhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCE
Confidence 3344444444443334444444444444444444444322 34444444444444444443332 33333 2444
Q ss_pred EEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCcc
Q 042902 103 FFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKL 182 (599)
Q Consensus 103 l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 182 (599)
|++++|.+++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+..+..+++|++|+|++|++
T Consensus 85 L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 85 LDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp EECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred EECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 445444444322 2255666666666665544332 45566666666666655555566666666666666666
Q ss_pred CCCCCccc-CCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccc
Q 042902 183 SGFVPACF-GNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTI 261 (599)
Q Consensus 183 ~~~~~~~~-~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 261 (599)
++..+..+ ..+++|++|+|++|.++.+|... .+++|++|++++|++++..+ .|..+++|+.|+|++|++++ +|..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~-l~~~~ 233 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKAL 233 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc-hhhHh
Confidence 65555444 24566666666666666554322 35666666666666664333 36666666666666666663 45556
Q ss_pred cCccccccccccccccc-ccCcccccCCCCcccccCC-CCcccccCCch
Q 042902 262 GDLKDLQYLFLEYNRLQ-GSIPDSIGGLIDLKSLDLS-NNNISGAIPIS 308 (599)
Q Consensus 262 ~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~-~N~l~~~~p~~ 308 (599)
..+++|+.|++++|+++ +.+|..+..+++|+.|+++ .+.+++..|..
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 66666677777777666 5566666666677777766 33455544433
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-34 Score=309.51 Aligned_cols=327 Identities=19% Similarity=0.176 Sum_probs=233.4
Q ss_pred CccCCCcCcc----CCCCCCcCCCCCCEEEccCccccccCCccc-cCCC----CCCEEeccCccCcccCCCcccccccCC
Q 042902 1 LLLWGNNFSG----TIPSFIFNASKLSRLELEMNSFYGFIPNTF-GNLR----NLKRLSLNYNYLTSSTPKLNFLSSLSN 71 (599)
Q Consensus 1 L~L~~n~~~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~----~L~~L~L~~N~l~~~~~~~~~~~~~~~ 71 (599)
|+|++|++++ .++..+..+++|++|+|++|++++..+..+ ..++ +|++|+|++|+++..... .+...+..
T Consensus 33 L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~ 111 (461)
T 1z7x_W 33 VRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG-VLSSTLRT 111 (461)
T ss_dssp EEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH-HHHHHTTS
T ss_pred EEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH-HHHHHHcc
Confidence 4677888774 345667777888888888888876544333 3455 688888888888753210 11235778
Q ss_pred CCCCcEEEcccCcccccCChhhhcc----cccceEEEccCCcccccC----CccccCCCCCCEEEccCCcCCcccCcccc
Q 042902 72 CKYLKYLSFSNNSLDGILPRAIGNL----SQSMEVFFMFNCNISGSI----PEEISNLTNLTTIYLGGNKLNGSIPIALD 143 (599)
Q Consensus 72 l~~L~~L~Ls~N~i~~~~~~~~~~l----~~~l~~l~l~~n~i~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 143 (599)
+++|++|+|++|.|+...+..+... ...|+.|++++|++++.. +..+..+++|++|+|++|.++...+..+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 8888888888888876555544431 124888888888887644 55566778888888888888754444433
Q ss_pred -----CCCCCCEEEccccccccc----CChhhhcCCCCcEEEeeCCccCCCC-----CcccCCCCCCcEeecCCCCCCC-
Q 042902 144 -----KLQKLQLLSLEDNQLEGS----IPDDLCRLAALFLLDLGGNKLSGFV-----PACFGNLTSLRNLYLGSNQLTS- 208 (599)
Q Consensus 144 -----~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~- 208 (599)
.+++|++|+|++|.+++. ++..+..+++|++|++++|++++.. +..+..+++|++|++++|.++.
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence 366888888888888753 4666777888888888888876532 3334457888888888888886
Q ss_pred ----CCccccCCCcccEEeecCCCccccCcccccc-----cccccEEEccCCccCCC----CCccccCcccccccccccc
Q 042902 209 ----IPSTLWNLKYILYLNLSSNSFTGPLPLEIGN-----LRVLVQIDLSMNNFSGF----IPTTIGDLKDLQYLFLEYN 275 (599)
Q Consensus 209 ----ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N 275 (599)
++..+..+++|++|++++|.+++..+..+.. .++|+.|+|++|.+++. ++..+..+++|++|+|++|
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 5666777888888888888887654444433 25888888888888765 3555667788888888888
Q ss_pred cccccCcccccC-----CCCcccccCCCCcccc----cCCchhhccccceEEEcccccCccc
Q 042902 276 RLQGSIPDSIGG-----LIDLKSLDLSNNNISG----AIPISLEKLLDLKYINVSFNKLEGE 328 (599)
Q Consensus 276 ~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~l~l~~N~l~~~ 328 (599)
++++..+..+.. .++|++|+|++|.+++ .+|..+..+++|++|++++|++++.
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 887665554443 5688888888888886 6777778888888888888887653
No 79
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.97 E-value=1e-31 Score=282.82 Aligned_cols=173 Identities=21% Similarity=0.321 Sum_probs=150.2
Q ss_pred HHHHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe
Q 042902 423 LFQATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF 498 (599)
Q Consensus 423 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 498 (599)
+....++|+..+.||+|+||+||+|++. +++.||||+++... ....+.+.+|+.++..++||||+++++++.+.+.
T Consensus 69 ~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~ 148 (437)
T 4aw2_A 69 MRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQDDNN 148 (437)
T ss_dssp HSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEECSSE
T ss_pred ccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCE
Confidence 3344678999999999999999999977 47899999996432 2233458899999999999999999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.|+|||||++|+|.+++......+++..+..++.||+.||.||| +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus 149 ~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~ 225 (437)
T 4aw2_A 149 LYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKL 225 (437)
T ss_dssp EEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH---hCCeEecccCHHHeeEcCCCCEEEcchhhhhhc
Confidence 99999999999999999876566899999999999999999999 899999999999999999999999999999866
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... ......+||+.||||
T Consensus 226 ~~~~~-~~~~~~~GT~~Y~AP 245 (437)
T 4aw2_A 226 MEDGT-VQSSVAVGTPDYISP 245 (437)
T ss_dssp CTTSC-EECCSCCSCGGGCCH
T ss_pred ccCCC-cccccccCCcCeeCh
Confidence 44332 233456899999998
No 80
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.8e-30 Score=264.08 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=176.4
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
++.|++++|+++ .+|..+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++
T Consensus 83 l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 83 RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp CCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred eeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 445555555554 34445555667777777777776 55666677777777777777776 5566677777777777777
Q ss_pred CccCCCCCcccC---------CCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccC
Q 042902 180 NKLSGFVPACFG---------NLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSM 250 (599)
Q Consensus 180 N~l~~~~~~~~~---------~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 250 (599)
|.+.+..|..+. ++++|++|+|++|.++.+|..+..+++|++|++++|.+++ +|..+..+++|+.|+|++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence 666666665544 4888999999999999888888888999999999999985 555788899999999999
Q ss_pred CccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCc
Q 042902 251 NNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLE 326 (599)
Q Consensus 251 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 326 (599)
|++.+.+|..++.+++|++|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|..+..+++|+.+++..|.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9988888989999999999999999988899988999999999999999999999999999999999999887764
No 81
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.8e-30 Score=264.10 Aligned_cols=225 Identities=20% Similarity=0.216 Sum_probs=167.9
Q ss_pred CCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCC
Q 042902 44 RNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTN 123 (599)
Q Consensus 44 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~ 123 (599)
.+++.|+|++|.++.+++. +..+++|++|+|++|.|+ . +|..+.++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~------l~~l~~L~~L~L~~n~l~-~-------------------------lp~~~~~l~~ 128 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ------AFRLSHLQHMTIDAAGLM-E-------------------------LPDTMQQFAG 128 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC------GGGGTTCSEEEEESSCCC-C-------------------------CCSCGGGGTT
T ss_pred cceeEEEccCCCchhcChh------hhhCCCCCEEECCCCCcc-c-------------------------hhHHHhccCC
Confidence 4556666666666555442 444555666666655555 3 3444555566
Q ss_pred CCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhh---------cCCCCcEEEeeCCccCCCCCcccCCCC
Q 042902 124 LTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLC---------RLAALFLLDLGGNKLSGFVPACFGNLT 194 (599)
Q Consensus 124 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---------~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 194 (599)
|++|+|++|.++ .+|..+..+++|++|+|++|++.+.+|..+. .+++|++|+|++|+++ .+|..+..++
T Consensus 129 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 206 (328)
T 4fcg_A 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206 (328)
T ss_dssp CSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred CCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence 666666666666 4455566666666666666655555555544 4888888888888888 5667788888
Q ss_pred CCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccc
Q 042902 195 SLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEY 274 (599)
Q Consensus 195 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 274 (599)
+|++|+|++|.++.+|..+..+++|++|++++|.+.+.+|..|.++++|+.|+|++|++.+.+|..++.+++|++|+|++
T Consensus 207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286 (328)
T ss_dssp TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTT
T ss_pred CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCC
Confidence 88888888888888888888888888888888888888888888888999999999888888888888899999999999
Q ss_pred ccccccCcccccCCCCcccccCCCCccc
Q 042902 275 NRLQGSIPDSIGGLIDLKSLDLSNNNIS 302 (599)
Q Consensus 275 N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 302 (599)
|++.+.+|..++.+++|+.+++..|.+.
T Consensus 287 n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 287 CVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888999999999999888877765
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-32 Score=277.09 Aligned_cols=266 Identities=18% Similarity=0.174 Sum_probs=181.9
Q ss_pred CCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCC
Q 042902 46 LKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLT 125 (599)
Q Consensus 46 L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~ 125 (599)
++.++++.+.+...... .+..+++|++|+|++|.|+++.|.+|..++ .|+.|++++|.+++..+ |..+++|+
T Consensus 12 l~i~~ls~~~l~~~~~~-----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~ 83 (317)
T 3o53_A 12 YKIEKVTDSSLKQALAS-----LRQSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLR 83 (317)
T ss_dssp EEEESCCTTTHHHHHHH-----HHTTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCC
T ss_pred eeEeeccccchhhhHHH-----HhccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCC
Confidence 44456666666554432 345566777777777777777777777776 47777777777776554 77777777
Q ss_pred EEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCC
Q 042902 126 TIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQ 205 (599)
Q Consensus 126 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 205 (599)
+|+|++|.+++.. ..++|++|++++|++++..+.. +++|++|++++|++++..+..|..+++|++|++++|.
T Consensus 84 ~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 84 TLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred EEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 7777777776443 2367777777777777654433 4667777777777777767677777777777777777
Q ss_pred CCCCC-cccc-CCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcc
Q 042902 206 LTSIP-STLW-NLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPD 283 (599)
Q Consensus 206 l~~ip-~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 283 (599)
++.++ ..+. .+++|++|++++|.+++.. ....+++|+.|+|++|.+++..+ .+..+++|++|+|++|+++ .+|.
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECT
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhh
Confidence 77653 3343 5677777777777777552 22346777777777777775433 4777777777777777777 3566
Q ss_pred cccCCCCcccccCCCCccc-ccCCchhhccccceEEEcc-cccCcccCCC
Q 042902 284 SIGGLIDLKSLDLSNNNIS-GAIPISLEKLLDLKYINVS-FNKLEGEIPR 331 (599)
Q Consensus 284 ~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~l~l~-~N~l~~~~p~ 331 (599)
.+..+++|+.|++++|+++ +.+|..+..+++|+.++++ .+.+++..|.
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 6777777777777777777 6666777777777777777 3445555544
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=7.4e-30 Score=279.28 Aligned_cols=259 Identities=24% Similarity=0.228 Sum_probs=114.9
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccce
Q 042902 22 LSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSME 101 (599)
Q Consensus 22 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~ 101 (599)
++.|++++|.++. +|..+. ++|++|+|++|.|+.++. .+++|++|+|++|+|+++.+ .+ ..|+
T Consensus 42 l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~lp~----~l-~~L~ 104 (622)
T 3g06_A 42 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSLPV----LP-PGLL 104 (622)
T ss_dssp CCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSCCCC---------CCTTCCEEEECSCCCSCCCC----CC-TTCC
T ss_pred CcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCCCCC---------cCCCCCEEEcCCCcCCcCCC----CC-CCCC
Confidence 4444444444443 222222 444444555444444332 13444444555444443222 11 2344
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCc
Q 042902 102 VFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNK 181 (599)
Q Consensus 102 ~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (599)
.|++++|++++..+ .+++|++|+|++|+|+++.+ .+++|++|+|++|+++++ |. .+++|+.|++++|+
T Consensus 105 ~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 105 ELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp EEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSC
T ss_pred EEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCC
Confidence 44444444443222 33445555555555543221 124455555555555432 21 22344555555555
Q ss_pred cCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccc
Q 042902 182 LSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTI 261 (599)
Q Consensus 182 l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 261 (599)
++++. ..+++|+.|++++|.|+.+|.. +++|+.|++++|.++.. |. .+++|+.|+|++|.|+++ |
T Consensus 173 l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~l-p--- 237 (622)
T 3g06_A 173 LTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTSL-P--- 237 (622)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSCC-C---
T ss_pred CCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCcC-C---
Confidence 54322 2234455555555555544432 23445555555555422 21 124455555555555432 2
Q ss_pred cCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccC
Q 042902 262 GDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEI 329 (599)
Q Consensus 262 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 329 (599)
..+++|+.|+|++|+|+. +|. .+++|+.|+|++|+|+ .+|..+..+++|+.|++++|++++.+
T Consensus 238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 233445555555555542 222 3344555555555555 34444555555555555555554443
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=6.6e-32 Score=273.04 Aligned_cols=248 Identities=19% Similarity=0.234 Sum_probs=199.5
Q ss_pred cCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCccc-ccCCcccc-------CCCCCCEEEccCCcCCcccCc
Q 042902 69 LSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNIS-GSIPEEIS-------NLTNLTTIYLGGNKLNGSIPI 140 (599)
Q Consensus 69 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~ 140 (599)
++..++|++|++++|.+ ..|..+... ++.|++++|.+. ...|..+. ++++|++|+|++|.+++..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455566666777766 345444432 666677777663 34455444 789999999999999988887
Q ss_pred cc--cCCCCCCEEEcccccccccCChhhhcC-----CCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCC---CC
Q 042902 141 AL--DKLQKLQLLSLEDNQLEGSIPDDLCRL-----AALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTS---IP 210 (599)
Q Consensus 141 ~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---ip 210 (599)
.+ ..+++|++|+|++|++++. |..+..+ ++|++|+|++|++++..+..|+.+++|++|+|++|++.. +|
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 8899999999999999977 7888887 899999999999999888999999999999999999764 34
Q ss_pred ccc--cCCCcccEEeecCCCcccc---CcccccccccccEEEccCCccCCCCC-ccccCcccccccccccccccccCccc
Q 042902 211 STL--WNLKYILYLNLSSNSFTGP---LPLEIGNLRVLVQIDLSMNNFSGFIP-TTIGDLKDLQYLFLEYNRLQGSIPDS 284 (599)
Q Consensus 211 ~~~--~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~ 284 (599)
..+ ..+++|++|++++|++++. ....+.++++|+.|+|++|.+++..| ..+..+++|++|+|++|+|+ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 444 7889999999999999842 22345678999999999999998775 55677899999999999999 66666
Q ss_pred ccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcc
Q 042902 285 IGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 285 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 327 (599)
+. ++|++|+|++|+|++. |. +..+++|++|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 65 8999999999999976 66 8899999999999999975
No 85
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.97 E-value=6.2e-31 Score=267.11 Aligned_cols=176 Identities=36% Similarity=0.601 Sum_probs=154.5
Q ss_pred HHHHHHhCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 421 LELFQATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 421 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
.++...+++|+..+.||+|+||.||+|++.+|+.||||++........+.+.+|++++++++||||+++++++.+.+..+
T Consensus 32 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 111 (321)
T 2qkw_B 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMI 111 (321)
T ss_dssp SCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCCE
T ss_pred HHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeEE
Confidence 34445678999999999999999999998889999999987766666788999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCC---CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 501 LVLEYMPHGSLEKCLYSSN---YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
+||||+++|+|.+++.... ..+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 112 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~ 188 (321)
T 2qkw_B 112 LIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLH---TRAIIHRDVKSINILLDENFVPKITDFGISKK 188 (321)
T ss_dssp EEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCSTTEEECTTCCEEECCCTTCEE
T ss_pred EEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhc---CCCeecCCCCHHHEEECCCCCEEEeecccccc
Confidence 9999999999999987543 24889999999999999999999 88999999999999999999999999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..............||+.|+||
T Consensus 189 ~~~~~~~~~~~~~~gt~~y~aP 210 (321)
T 2qkw_B 189 GTELDQTHLSTVVKGTLGYIDP 210 (321)
T ss_dssp CSSSSCCCCBCCCEEETTTCCH
T ss_pred cccccccccccccCCCccccCH
Confidence 5433333333445689999998
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=4.5e-31 Score=266.93 Aligned_cols=248 Identities=19% Similarity=0.184 Sum_probs=169.5
Q ss_pred cCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccC-------CCCCCcEEEcccCcccccC
Q 042902 17 FNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLS-------NCKYLKYLSFSNNSLDGIL 89 (599)
Q Consensus 17 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-------~l~~L~~L~Ls~N~i~~~~ 89 (599)
...++|++|++++|.+ .+|..+... |+.|+|++|+++..... ..+. ++++|++|+|++|+|++..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~----~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 111 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIP----SRILFGALRVLGISGLQELTLENLEVTGTA 111 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECB----HHHHHHHHHHHTTSCCCEEEEEEEBCBSCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcC----HHHHHHHHHhcCcCCccEEEccCCcccchh
Confidence 3455677777777777 345555443 77777777777543211 1122 5677777777777777666
Q ss_pred Chhh--hcccccceEEEccCCcccccCCccccCC-----CCCCEEEccCCcCCcccCccccCCCCCCEEEccccccccc-
Q 042902 90 PRAI--GNLSQSMEVFFMFNCNISGSIPEEISNL-----TNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGS- 161 (599)
Q Consensus 90 ~~~~--~~l~~~l~~l~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~- 161 (599)
|..+ ..++ .|+.|++++|++++. |..+..+ ++|++|+|++|++++..|..|..+++|++|+|++|++.+.
T Consensus 112 ~~~~~~~~l~-~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 112 PPPLLEATGP-DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCSSSCCSC-CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred HHHHHHhcCC-CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence 6665 5554 477777777777766 6666665 7788888888887777777777778888888888876543
Q ss_pred -CChhh--hcCCCCcEEEeeCCccCCC---CCcccCCCCCCcEeecCCCCCCCCC--ccccCCCcccEEeecCCCccccC
Q 042902 162 -IPDDL--CRLAALFLLDLGGNKLSGF---VPACFGNLTSLRNLYLGSNQLTSIP--STLWNLKYILYLNLSSNSFTGPL 233 (599)
Q Consensus 162 -~~~~~--~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~~~ 233 (599)
.+..+ ..+++|++|+|++|++++. ....+..+++|++|++++|+++..+ ..+..+++|++|+|++|.|+ .+
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~i 268 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QV 268 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SC
T ss_pred HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hh
Confidence 23333 6777788888888877732 2234456677888888888877654 34455677888888888877 45
Q ss_pred cccccccccccEEEccCCccCCCCCccccCcccccccccccccccc
Q 042902 234 PLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQG 279 (599)
Q Consensus 234 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 279 (599)
|..+. ++|+.|||++|+|++. |. +..+++|++|+|++|++++
T Consensus 269 p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55554 7788888888888766 44 7788888888888888764
No 87
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=260.48 Aligned_cols=169 Identities=26% Similarity=0.407 Sum_probs=147.9
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
++|...+.||+|+||.||+|.+. +++.||+|++........+.|.+|++++++++||||+++++++.+++..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 56788899999999999999975 68999999987666666788999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCce-
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSL- 585 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~- 585 (599)
++|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+.......
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~ 166 (310)
T 3s95_A 90 KGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPE 166 (310)
T ss_dssp TTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEECTTSCEEECCCTTCEECC-------
T ss_pred CCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCcCeEEECCCCCEEEeecccceeccccccccc
Confidence 999999999886667999999999999999999999 8899999999999999999999999999998664332211
Q ss_pred -----------eeecccCCccccCC
Q 042902 586 -----------TQTQTLATIGYMAP 599 (599)
Q Consensus 586 -----------~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 167 ~~~~~~~~~~~~~~~~~gt~~y~aP 191 (310)
T 3s95_A 167 GLRSLKKPDRKKRYTVVGNPYWMAP 191 (310)
T ss_dssp -------------CCCCSCGGGCCH
T ss_pred ccccccccccccccccCCCcceeCH
Confidence 11145799999998
No 88
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.97 E-value=4.6e-30 Score=257.64 Aligned_cols=166 Identities=28% Similarity=0.412 Sum_probs=148.6
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.++|+..+.||+|+||.||+|.. .+|+.||||++........+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 45799999999999999999986 46999999999776666678899999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCce
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSL 585 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~ 585 (599)
+++|+|.+++.... +++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.......
T Consensus 99 ~~~~~L~~~~~~~~--~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-- 171 (297)
T 3fxz_A 99 LAGGSLTDVVTETC--MDEGQIAAVCRECLQALEFLH---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-- 171 (297)
T ss_dssp CTTCBHHHHHHHSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--
T ss_pred CCCCCHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--
Confidence 99999999997753 788999999999999999999 88999999999999999999999999999987643322
Q ss_pred eeecccCCccccCC
Q 042902 586 TQTQTLATIGYMAP 599 (599)
Q Consensus 586 ~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 172 ~~~~~~gt~~y~aP 185 (297)
T 3fxz_A 172 KRSTMVGTPYWMAP 185 (297)
T ss_dssp CBCCCCSCGGGCCH
T ss_pred ccCCccCCcCccCh
Confidence 23456799999998
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=4.8e-29 Score=272.86 Aligned_cols=264 Identities=23% Similarity=0.255 Sum_probs=225.4
Q ss_pred CccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEc
Q 042902 1 LLLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSF 80 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~L 80 (599)
|++++|+++ .+|..+. ++|++|+|++|+|+.+.+ .+++|++|+|++|+|++++. .+++|++|+|
T Consensus 45 L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~L 108 (622)
T 3g06_A 45 LNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---------LPPGLLELSI 108 (622)
T ss_dssp EECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---------CCTTCCEEEE
T ss_pred EEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---------CCCCCCEEEC
Confidence 578999999 7788776 799999999999997543 57999999999999998764 5689999999
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEG 160 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 160 (599)
++|+|+++.+ ....|+.|++++|+++++ |. .+++|++|+|++|.++++ |. .+++|+.|++++|.|++
T Consensus 109 s~N~l~~l~~-----~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTHLPA-----LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCCCCC-----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCCCCCC-----CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 9999997544 234699999999999964 43 359999999999999965 33 45789999999999996
Q ss_pred cCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccccc
Q 042902 161 SIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNL 240 (599)
Q Consensus 161 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 240 (599)
+| ..+++|+.|++++|+++++.+ .+++|+.|++++|.++.+|.. +++|+.|++++|.|++ +| ..+
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 45 457899999999999997543 247899999999999999864 4789999999999996 44 456
Q ss_pred ccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccc
Q 042902 241 RVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLL 313 (599)
Q Consensus 241 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 313 (599)
++|+.|+|++|.|+.+ |. .+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8999999999999964 44 6789999999999999 6788899999999999999999999998887765
No 90
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.96 E-value=3.2e-30 Score=262.39 Aligned_cols=186 Identities=38% Similarity=0.584 Sum_probs=159.1
Q ss_pred cccccccHHHHHHHhCCCCcCceecccccceEEEEEecCCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEE
Q 042902 413 ANLRRFTHLELFQATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIIS 491 (599)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~ 491 (599)
...+.++..++....++|...+.||+|+||.||+|+..+|+.||||++.... ......+.+|++++++++||||+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 4456788889999999999999999999999999998889999999997543 223347899999999999999999999
Q ss_pred EEEcCCeeeEEEEccCCCChhhhhhcCCC---cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEE
Q 042902 492 SCSNDDFKALVLEYMPHGSLEKCLYSSNY---ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAH 568 (599)
Q Consensus 492 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~---~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~k 568 (599)
++.+.+..++||||+++|+|.+++..... .+++..+..++.|+++||+|||..+..+|+||||||+||+++.++.+|
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k 174 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV 174 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence 99999999999999999999999986542 489999999999999999999933333999999999999999999999
Q ss_pred EccccCCccCCcCCCceeeecccCCccccCC
Q 042902 569 LSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 569 l~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+|||+|+....... .......||+.|+||
T Consensus 175 l~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aP 204 (326)
T 3uim_A 175 VGDFGLAKLMDYKDT-HVTTAVRGTIGHIAP 204 (326)
T ss_dssp ECCCSSCEECCSSSS-CEECCCCSCGGGCCH
T ss_pred eccCccccccCcccc-cccccccCCcCccCH
Confidence 999999987643332 233456699999998
No 91
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.96 E-value=9.7e-30 Score=258.19 Aligned_cols=176 Identities=27% Similarity=0.347 Sum_probs=152.8
Q ss_pred cccHHHHHHHhCC----------CCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCc
Q 042902 417 RFTHLELFQATNG----------FSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN 485 (599)
Q Consensus 417 ~~~~~~~~~~~~~----------~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n 485 (599)
.++..++..+++. |+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n 103 (321)
T 2c30_A 24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN 103 (321)
T ss_dssp -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence 4566666666543 566779999999999999976 79999999998766666788999999999999999
Q ss_pred ceeEEEEEEcCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC
Q 042902 486 LIKIISSCSNDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM 565 (599)
Q Consensus 486 iv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~ 565 (599)
|+++++++...+..++||||+++|+|.+++... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++
T Consensus 104 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~ 178 (321)
T 2c30_A 104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYLH---AQGVIHRDIKSDSILLTLDG 178 (321)
T ss_dssp BCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTC
T ss_pred cceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEECCCC
Confidence 999999999999999999999999999998754 4899999999999999999999 88999999999999999999
Q ss_pred cEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 566 VAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 566 ~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.+||+|||+++....... ......||+.|+||
T Consensus 179 ~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP 210 (321)
T 2c30_A 179 RVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAP 210 (321)
T ss_dssp CEEECCCTTCEECCSSSC--CBCCCCSCGGGCCH
T ss_pred cEEEeeeeeeeecccCcc--ccccccCCccccCH
Confidence 999999999986643322 23456799999998
No 92
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.6e-30 Score=271.88 Aligned_cols=173 Identities=23% Similarity=0.352 Sum_probs=150.0
Q ss_pred HHHHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe
Q 042902 423 LFQATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF 498 (599)
Q Consensus 423 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 498 (599)
.....++|+..+.||+|+||.||+|+.. +|+.||||++++.. ....+.+.+|+.++..++||||+++++++.+.+.
T Consensus 56 ~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~~~~ 135 (412)
T 2vd5_A 56 VRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQDENY 135 (412)
T ss_dssp HSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEECSSE
T ss_pred ccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCE
Confidence 3344678999999999999999999975 69999999996432 2234568899999999999999999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.|+||||+++|+|.+++...+..+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+
T Consensus 136 ~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~giiHrDLKp~NILld~~g~vkL~DFGla~~~ 212 (412)
T 2vd5_A 136 LYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKL 212 (412)
T ss_dssp EEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred EEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeecccCHHHeeecCCCCEEEeechhheec
Confidence 99999999999999999875556899999999999999999999 899999999999999999999999999999876
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... ......+||+.||||
T Consensus 213 ~~~~~-~~~~~~~Gt~~Y~AP 232 (412)
T 2vd5_A 213 RADGT-VRSLVAVGTPDYLSP 232 (412)
T ss_dssp CTTSC-EECSSCCSCGGGCCH
T ss_pred cCCCc-cccceeccccCcCCH
Confidence 44322 223446899999998
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-30 Score=279.82 Aligned_cols=235 Identities=21% Similarity=0.212 Sum_probs=140.7
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccc
Q 042902 19 ASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQ 98 (599)
Q Consensus 19 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~ 98 (599)
+++|++|+|++|+|+++.|.+|..+++|++|+|++|.+++.++ |..+++|++|+|++|.|+++.+. +
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~l~~~------~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-------LESLSTLRTLDLNNNYVQELLVG------P 99 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-------CTTCTTCCEEECCSSEEEEEEEC------T
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-------cccCCCCCEEEecCCcCCCCCCC------C
Confidence 3478888888888888877888888888888888888876543 67788888888888888754322 2
Q ss_pred cceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhh-cCCCCcEEEe
Q 042902 99 SMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLC-RLAALFLLDL 177 (599)
Q Consensus 99 ~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L 177 (599)
.|+.|++++|.+++..+. .+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..+. .+++|+.|+|
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 466666666666654443 235566666666666655555556666666666666666655555554 4555666666
Q ss_pred eCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccC-CC
Q 042902 178 GGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFS-GF 256 (599)
Q Consensus 178 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ 256 (599)
++|.+++..+ +..+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.
T Consensus 177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 6665554422 223555555555555555555445555555555555555553 3334444455555555555544 33
Q ss_pred CCccccCccccccccc
Q 042902 257 IPTTIGDLKDLQYLFL 272 (599)
Q Consensus 257 ~~~~~~~l~~L~~L~L 272 (599)
+|..+..++.|+.+++
T Consensus 254 ~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred hHHHHHhCCCCcEEec
Confidence 3444444444444444
No 94
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.96 E-value=4.7e-30 Score=260.94 Aligned_cols=166 Identities=27% Similarity=0.402 Sum_probs=146.7
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEeccc--ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQ--YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|...+.||+|+||.||+|++ .+|+.||||++... .....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 93 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM 93 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence 45789999999999999999997 47999999999654 2334567899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++...+ .+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 94 e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~lH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~- 168 (328)
T 3fe3_A 94 EYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG- 168 (328)
T ss_dssp CCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC-
T ss_pred ECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC-
Confidence 9999999999987654 4888999999999999999999 8899999999999999999999999999998654332
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.....+||+.|+||
T Consensus 169 --~~~~~~gt~~y~aP 182 (328)
T 3fe3_A 169 --KLDAFCGAPPYAAP 182 (328)
T ss_dssp --GGGTTSSSGGGCCH
T ss_pred --ccccccCCcceeCc
Confidence 23456799999998
No 95
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.96 E-value=4.9e-30 Score=265.53 Aligned_cols=170 Identities=28% Similarity=0.453 Sum_probs=146.1
Q ss_pred hCCCCcCceecccccceEEEEEec--------CCcEEEEEEecccc-cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcC
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ--------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRI-RHRNLIKIISSCSND 496 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 496 (599)
.++|...+.||+|+||.||+|++. ++..||||+++... ....+++.+|+++++++ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 357888899999999999999852 35679999997553 33457899999999999 899999999999999
Q ss_pred CeeeEEEEccCCCChhhhhhcCC---------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee
Q 042902 497 DFKALVLEYMPHGSLEKCLYSSN---------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL 561 (599)
Q Consensus 497 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill 561 (599)
+..|+||||+++|+|.+++.... ..+++..+..++.||++||+||| +.+|+||||||+|||+
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeccccchhhEEE
Confidence 99999999999999999997643 24788999999999999999999 8899999999999999
Q ss_pred cCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 562 DDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 562 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.++.+||+|||+|+.+.............+|+.||||
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP 274 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP 274 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECH
Confidence 99999999999999876544333333456678999998
No 96
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.96 E-value=2.3e-30 Score=270.53 Aligned_cols=170 Identities=25% Similarity=0.349 Sum_probs=147.6
Q ss_pred HHHhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee
Q 042902 424 FQATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 499 (599)
Q Consensus 424 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 499 (599)
....++|...+.||+|+||.||+|+.. +++.||+|+++.. .....+.+.+|+.+++.++|||||++++++.+.+..
T Consensus 65 ~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~ 144 (410)
T 3v8s_A 65 RMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDDRYL 144 (410)
T ss_dssp SCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEE
Confidence 344678999999999999999999976 5899999998643 122345688999999999999999999999999999
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
|+|||||+||+|.+++.... +++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+.
T Consensus 145 ~lV~E~~~gg~L~~~l~~~~--~~e~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~ 219 (410)
T 3v8s_A 145 YMVMEYMPGGDLVNLMSNYD--VPEKWARFYTAEVVLALDAIH---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMN 219 (410)
T ss_dssp EEEECCCTTEEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEEEeCCCCCcHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHH---HCCeEeccCCHHHeeECCCCCEEEeccceeEeec
Confidence 99999999999999997653 788899999999999999999 8899999999999999999999999999998764
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
... .......+||+.||||
T Consensus 220 ~~~-~~~~~~~~gt~~Y~AP 238 (410)
T 3v8s_A 220 KEG-MVRCDTAVGTPDYISP 238 (410)
T ss_dssp TTS-EEECCSCCSCGGGCCH
T ss_pred cCC-cccccCCcCCccccCH
Confidence 332 2233457899999998
No 97
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.96 E-value=6.5e-30 Score=260.66 Aligned_cols=166 Identities=26% Similarity=0.354 Sum_probs=145.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||.||+|+.. +|+.||||+++.. .....+.+..|+++++.++||||+++++++.+.+..|+||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 56888999999999999999976 6999999999654 2345678899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.......
T Consensus 85 E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~ 160 (337)
T 1o6l_A 85 EYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYLH---SRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA 160 (337)
T ss_dssp ECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC
T ss_pred eCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCC
Confidence 9999999999887643 4788899999999999999999 88999999999999999999999999999986433222
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.....+||+.||||
T Consensus 161 --~~~~~~gt~~y~aP 174 (337)
T 1o6l_A 161 --TMKTFCGTPEYLAP 174 (337)
T ss_dssp --CBCCCEECGGGCCG
T ss_pred --cccccccChhhCCh
Confidence 23456799999998
No 98
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.96 E-value=7e-30 Score=262.17 Aligned_cols=167 Identities=28% Similarity=0.359 Sum_probs=141.6
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 501 (599)
.++|+..+.||+|+||.||+|+.. +|+.||||+++.. .....+.+..|.++++.+ +||||+++++++.+.+..|+
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 468999999999999999999976 5899999999754 234556788999999988 69999999999999999999
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus 102 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~ 177 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFLH---DKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICN 177 (353)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCcccCCCHHHEEECCCCCEEEccccceeecccC
Confidence 999999999999987654 4889999999999999999999 889999999999999999999999999999854322
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
. ......+||+.||||
T Consensus 178 ~--~~~~~~~gt~~y~aP 193 (353)
T 3txo_A 178 G--VTTATFCGTPDYIAP 193 (353)
T ss_dssp ----------CCGGGCCH
T ss_pred C--ccccccCCCcCeECh
Confidence 2 233456899999998
No 99
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.96 E-value=8.1e-30 Score=258.95 Aligned_cols=169 Identities=24% Similarity=0.354 Sum_probs=145.5
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 357889999999999999999876 78999999986543 2334678899999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++|+|.+++.... .+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+......
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 161 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence 999999999987654 4889999999999999999999 899999999999999999999999999999866443333
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 162 ~~~~~~~gt~~y~aP 176 (323)
T 3tki_A 162 RLLNKMCGTLPYVAP 176 (323)
T ss_dssp CCBCSCCSCGGGSCH
T ss_pred cccCCCccCcCccCc
Confidence 333456899999998
No 100
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.96 E-value=7.9e-30 Score=260.88 Aligned_cols=169 Identities=27% Similarity=0.396 Sum_probs=139.7
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
..++|...+.||+|+||.||+|++. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 3467889999999999999999964 79999999986543 233457899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++...+ .+++..+..++.||++||.||| +.+|+||||||+||++++++.+||+|||+|+......
T Consensus 88 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~- 162 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYVH---SQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNK- 162 (347)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBC------
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCC-
Confidence 9999999999987654 4889999999999999999999 8899999999999999999999999999998654322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.......+||+.|+||
T Consensus 163 ~~~~~~~~gt~~y~aP 178 (347)
T 3zgw_A 163 DYHLQTCCGSLAYAAP 178 (347)
T ss_dssp ---------CGGGCCH
T ss_pred CccccccCCccCccCH
Confidence 2223456799999998
No 101
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.96 E-value=1.4e-29 Score=257.44 Aligned_cols=169 Identities=28% Similarity=0.480 Sum_probs=143.6
Q ss_pred CCCCcCceecccccceEEEEEec----CCcEEEEEEeccc-ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ----DGIEVAVKVFDLQ-YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
++|...+.||+|+||.||+|++. .+..||||+++.. .....+.|.+|++++++++||||+++++++.+.+..++|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 128 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence 46778899999999999999974 3556999999755 334457899999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.+....
T Consensus 129 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 205 (325)
T 3kul_A 129 TEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP 205 (325)
T ss_dssp EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCSSCEECC---
T ss_pred eeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEECCCCCEEECCCCcccccccCc
Confidence 9999999999999877667999999999999999999999 8899999999999999999999999999998764432
Q ss_pred C-ceeeecccCCccccCC
Q 042902 583 Q-SLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~-~~~~~~~~gt~~y~AP 599 (599)
. ........+|+.|+||
T Consensus 206 ~~~~~~~~~~~t~~y~aP 223 (325)
T 3kul_A 206 DAAYTTTGGKIPIRWTAP 223 (325)
T ss_dssp -CCEECC---CCGGGSCH
T ss_pred cceeeccCCCCcccccCH
Confidence 2 2223445678899998
No 102
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.96 E-value=4.9e-29 Score=251.32 Aligned_cols=181 Identities=35% Similarity=0.535 Sum_probs=157.7
Q ss_pred cccccHHHHHHHhCCCCcC------ceecccccceEEEEEecCCcEEEEEEeccc----ccccHHHHHHHHHHHhcCCCC
Q 042902 415 LRRFTHLELFQATNGFSEN------NLIGRGGVASVYKARIQDGIEVAVKVFDLQ----YEGAFKSFDIECDMMKRIRHR 484 (599)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~------~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~----~~~~~~~~~~e~~~l~~l~h~ 484 (599)
...|+..++..++++|... +.||+|+||.||+|.. +++.||||++... .....+.+.+|++++++++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4578899999999999887 8999999999999987 5899999998643 233467899999999999999
Q ss_pred cceeEEEEEEcCCeeeEEEEccCCCChhhhhhcC--CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec
Q 042902 485 NLIKIISSCSNDDFKALVLEYMPHGSLEKCLYSS--NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD 562 (599)
Q Consensus 485 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~ 562 (599)
||+++++++.+.+..++||||+++|+|.+++... ...+++..+..++.||++||.||| +.+|+||||||+||+++
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nili~ 167 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLH---ENHHIHRDIKSANILLD 167 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEC
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh---cCCeecCCCCHHHEEEc
Confidence 9999999999999999999999999999998643 235889999999999999999999 88999999999999999
Q ss_pred CCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 563 DNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 563 ~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.++.+||+|||+++...............||+.|+||
T Consensus 168 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aP 204 (307)
T 2nru_A 168 EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAP 204 (307)
T ss_dssp TTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCH
T ss_pred CCCcEEEeecccccccccccccccccccCCCcCcCCh
Confidence 9999999999999866543333333456799999998
No 103
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=262.82 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=143.7
Q ss_pred hCCCCcCceecccccceEEEEE------ecCCcEEEEEEecccccccHHHHHHHHHHHhcCC---CCcceeEEEEEEcCC
Q 042902 427 TNGFSENNLIGRGGVASVYKAR------IQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR---HRNLIKIISSCSNDD 497 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~ 497 (599)
.++|...+.||+|+||.||+|. ..+++.||||+++.. ...++..|++++++++ |+||+++++++...+
T Consensus 64 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~ 140 (365)
T 3e7e_A 64 SKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN 140 (365)
T ss_dssp SSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred CEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence 4678889999999999999994 446899999999654 3456778888888886 999999999999999
Q ss_pred eeeEEEEccCCCChhhhhhc----CCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC----------
Q 042902 498 FKALVLEYMPHGSLEKCLYS----SNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD---------- 563 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~---------- 563 (599)
..++|||||++|+|.+++.. ....+++..+..|+.||++||+||| +.+|+||||||+|||++.
T Consensus 141 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH---~~~ivHrDiKp~NIll~~~~~~~~~~~~ 217 (365)
T 3e7e_A 141 GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDD 217 (365)
T ss_dssp CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECGGGTCC-----
T ss_pred CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeecCCCCHHHEEecccccCcccccc
Confidence 99999999999999999974 3446899999999999999999999 899999999999999998
Q ss_pred -CCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 564 -NMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 564 -~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++.+||+|||+|+.+............+||++||||
T Consensus 218 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aP 254 (365)
T 3e7e_A 218 LSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCV 254 (365)
T ss_dssp -CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCH
T ss_pred ccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCCh
Confidence 899999999999865433334455667899999998
No 104
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.96 E-value=2.5e-29 Score=256.16 Aligned_cols=170 Identities=24% Similarity=0.407 Sum_probs=141.2
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC-------
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------- 497 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------- 497 (599)
.++|+..+.||+|+||.||+|++. +|+.||||+++... ....+.+.+|++++++++||||+++++++.+.+
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 346888899999999999999986 79999999997543 345678999999999999999999999986543
Q ss_pred --------------------------------------------------eeeEEEEccCCCChhhhhhcCCC--cCCHH
Q 042902 498 --------------------------------------------------FKALVLEYMPHGSLEKCLYSSNY--ILDIF 525 (599)
Q Consensus 498 --------------------------------------------------~~~lv~e~~~~g~L~~~l~~~~~--~~~~~ 525 (599)
..++||||+++|+|.+++..... ..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~ 164 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG 164 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence 37999999999999999987543 35666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc----------eeeecccCCcc
Q 042902 526 QRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS----------LTQTQTLATIG 595 (599)
Q Consensus 526 ~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~----------~~~~~~~gt~~ 595 (599)
.+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+........ .......||+.
T Consensus 165 ~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 241 (332)
T 3qd2_B 165 VCLHIFIQIAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL 241 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred HHHHHHHHHHHHHHHHH---hCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence 78899999999999999 889999999999999999999999999999876543211 12244579999
Q ss_pred ccCC
Q 042902 596 YMAP 599 (599)
Q Consensus 596 y~AP 599 (599)
|+||
T Consensus 242 y~aP 245 (332)
T 3qd2_B 242 YMSP 245 (332)
T ss_dssp GSCH
T ss_pred ccCh
Confidence 9998
No 105
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.96 E-value=1.1e-29 Score=257.93 Aligned_cols=166 Identities=27% Similarity=0.369 Sum_probs=143.0
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC----eeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD----FKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~----~~~lv 502 (599)
.++|+..+.||+|+||.||+|++. ++.||||+++.... ....+..|+.++++++|||||++++++.... ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 457888999999999999999886 89999999965432 3345667999999999999999999998754 46999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCC----------CeEEccCCCCCeeecCCCcEEEccc
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSV----------PIIHCDLKPNNVLLDDNMVAHLSDF 572 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~----------~iiH~dlk~~Nill~~~~~~kl~DF 572 (599)
|||+++|+|.+++.... +++..+..++.|+++||+||| +. +|+||||||+||+++.++.+||+||
T Consensus 101 ~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~al~~LH---~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 101 TAFHEKGSLSDFLKANV--VSWNELCHIAETMARGLAYLH---EDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EECCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHT---CCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred EecCCCCCHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHH---hhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 99999999999997754 899999999999999999999 77 9999999999999999999999999
Q ss_pred cCCccCCcCCCceeeecccCCccccCC
Q 042902 573 GMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 573 Gla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+|+.+.............||+.|+||
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aP 202 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAP 202 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCH
T ss_pred CcccccccccCccccccCccCccccCH
Confidence 999876544433334456799999998
No 106
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=260.78 Aligned_cols=165 Identities=26% Similarity=0.368 Sum_probs=146.3
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|+.. +++.||+|++... .....+.+.+|+++++.++|||||++++++.+.+..|+||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 56888999999999999999876 5889999998643 2345678899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+|||++.++.+||+|||+|+.+....
T Consensus 95 e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~- 169 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET- 169 (384)
T ss_dssp CCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC-
T ss_pred ecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC-
Confidence 9999999999998654 4889999999999999999999 8999999999999999999999999999998664332
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.....+||+.||||
T Consensus 170 --~~~~~~gt~~Y~aP 183 (384)
T 4fr4_A 170 --QITTMAGTKPYMAP 183 (384)
T ss_dssp --CBCCCCSCGGGCCG
T ss_pred --ceeccCCCccccCC
Confidence 23456899999998
No 107
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.96 E-value=1.8e-29 Score=258.22 Aligned_cols=169 Identities=23% Similarity=0.364 Sum_probs=146.0
Q ss_pred HHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCee
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFK 499 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~ 499 (599)
...++|...+.||+|+||.||+|+.. +|+.||||+++... ....+.+..|.+++..+ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34578999999999999999999976 68999999997542 34566788899999877 899999999999999999
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
|+||||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+...
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 169 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFLH---SKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM 169 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence 99999999999999987643 4889999999999999999999 8899999999999999999999999999998643
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
.... .....+||+.||||
T Consensus 170 ~~~~--~~~~~~gt~~y~aP 187 (345)
T 1xjd_A 170 LGDA--KTNTFCGTPDYIAP 187 (345)
T ss_dssp CTTC--CBCCCCSCGGGCCH
T ss_pred cCCC--cccCCCCCcccCCh
Confidence 2222 23456899999998
No 108
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.96 E-value=3.7e-29 Score=253.79 Aligned_cols=166 Identities=20% Similarity=0.306 Sum_probs=146.9
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.++|...+.||+|+||.||+|... +++.||+|.+.... .....+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 367889999999999999999976 58899999987543 3456788999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC--CCcEEEccccCCccCCcCCC
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD--NMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~--~~~~kl~DFGla~~~~~~~~ 583 (599)
+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+||+++. ++.+||+|||+|+.+....
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~- 158 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD- 158 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-
Confidence 9999999999876667899999999999999999999 889999999999999987 7899999999998764332
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 159 --~~~~~~gt~~y~aP 172 (321)
T 1tki_A 159 --NFRLLFTAPEYYAP 172 (321)
T ss_dssp --EEEEEESCGGGSCH
T ss_pred --ccccccCChhhcCc
Confidence 23446799999998
No 109
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.96 E-value=2.6e-29 Score=253.83 Aligned_cols=167 Identities=28% Similarity=0.400 Sum_probs=143.9
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|+..+|+.||||++.... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 36788999999999999999999889999999996542 2335678999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++ ++.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.......
T Consensus 100 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~- 174 (311)
T 3niz_A 100 FMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCH---QHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR- 174 (311)
T ss_dssp CCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-
T ss_pred CCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc-
Confidence 9975 888888777667899999999999999999999 88999999999999999999999999999986643222
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 175 -~~~~~~~t~~y~aP 188 (311)
T 3niz_A 175 -SYTHEVVTLWYRAP 188 (311)
T ss_dssp ----CCCCCCTTCCH
T ss_pred -cccCCcccCCcCCH
Confidence 23445789999998
No 110
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.96 E-value=5.5e-30 Score=265.95 Aligned_cols=170 Identities=26% Similarity=0.393 Sum_probs=145.0
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|...+.||+|+||.||+|++. +++.||||.++... ....++|.+|++++++++||||+++++++...+..++|||
T Consensus 113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 192 (377)
T 3cbl_A 113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME 192 (377)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence 457888899999999999999986 78999999987543 2334578999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++|+|.+++...+..+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+........
T Consensus 193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~ 269 (377)
T 3cbl_A 193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYA 269 (377)
T ss_dssp CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEE
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCcee
Confidence 99999999999876666899999999999999999999 889999999999999999999999999999864332111
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......+|+.|+||
T Consensus 270 ~~~~~~~~~~~y~aP 284 (377)
T 3cbl_A 270 ASGGLRQVPVKWTAP 284 (377)
T ss_dssp CCSSCCEEEGGGSCH
T ss_pred ecCCCCCCCcCcCCH
Confidence 111223357789998
No 111
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.96 E-value=3.5e-29 Score=253.31 Aligned_cols=163 Identities=28% Similarity=0.352 Sum_probs=144.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||.||+|+.. +|+.||+|+++... ....+.+.+|+.+++.++||||+++++++.+.+..|+||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 56888999999999999999976 69999999996542 234677889999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 86 e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~-- 159 (318)
T 1fot_A 86 DYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-- 159 (318)
T ss_dssp CCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC--
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChheEEEcCCCCEEEeecCcceecCCc--
Confidence 9999999999998654 4788899999999999999999 899999999999999999999999999999865321
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
....+||+.||||
T Consensus 160 ---~~~~~gt~~y~aP 172 (318)
T 1fot_A 160 ---TYTLCGTPDYIAP 172 (318)
T ss_dssp ---BCCCCSCTTTCCH
T ss_pred ---cccccCCccccCH
Confidence 2345799999998
No 112
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.96 E-value=1.4e-29 Score=263.09 Aligned_cols=167 Identities=28% Similarity=0.346 Sum_probs=143.4
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~l 501 (599)
.++|+..+.||+|+||.||+|+.. +++.||||+++... ....+.+..|..++.++ +|||||++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 357888999999999999999976 58899999997542 22345688899999887 89999999999999999999
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|..++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus 131 V~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~ 206 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence 999999999999987643 4889999999999999999999 889999999999999999999999999999864322
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
. ......+||+.||||
T Consensus 207 ~--~~~~~~~gt~~Y~aP 222 (396)
T 4dc2_A 207 G--DTTSTFCGTPNYIAP 222 (396)
T ss_dssp T--CCBCCCCBCGGGCCH
T ss_pred C--CccccccCCcccCCc
Confidence 2 223456899999998
No 113
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.96 E-value=1.5e-29 Score=261.98 Aligned_cols=169 Identities=27% Similarity=0.495 Sum_probs=135.3
Q ss_pred CCCCcCceecccccceEEEEEec----CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ----DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.+|+..+.||+|+||.||+|++. ++..||||+++... ....++|.+|++++++++||||+++++++.+.+..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 47888999999999999999865 57789999997553 34457899999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.++++.....+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 125 ~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 201 (373)
T 2qol_A 125 TEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP 201 (373)
T ss_dssp EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred EeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCcceEEEcCCCCEEECcCccccccccCC
Confidence 9999999999999877667899999999999999999999 8899999999999999999999999999998764332
Q ss_pred Cc-eeeecccCCccccCC
Q 042902 583 QS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~-~~~~~~~gt~~y~AP 599 (599)
.. .......+|+.|+||
T Consensus 202 ~~~~~~~~~~~~~~y~aP 219 (373)
T 2qol_A 202 EAAYTTRGGKIPIRWTSP 219 (373)
T ss_dssp ------------CTTSCH
T ss_pred ccceeccCCCcCCCccCh
Confidence 21 122234467889998
No 114
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.96 E-value=5.3e-29 Score=256.32 Aligned_cols=166 Identities=25% Similarity=0.379 Sum_probs=145.5
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc------ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE------GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 499 (599)
.+.|...+.||+|+||.||+|+.. +|+.||||+++.... ...+.+.+|+.++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 457889999999999999999976 689999999975432 1357899999999999999999999999999999
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC----cEEEccccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM----VAHLSDFGMA 575 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~----~~kl~DFGla 575 (599)
++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||++++++ .+||+|||+|
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 99999999999999997644 5889999999999999999999 88999999999999998776 7999999999
Q ss_pred ccCCcCCCceeeecccCCccccCC
Q 042902 576 KPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 576 ~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.+.... ......||+.|+||
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aP 187 (361)
T 2yab_A 167 HEIEDGV---EFKNIFGTPEFVAP 187 (361)
T ss_dssp EECCTTC---CCCCCCSCGGGCCH
T ss_pred eEcCCCC---ccccCCCCccEECc
Confidence 8764332 23456799999998
No 115
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.96 E-value=2.9e-29 Score=251.44 Aligned_cols=167 Identities=28% Similarity=0.483 Sum_probs=140.3
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||.||+|+.. +++.||+|.+.... ....+.|.+|++++++++||||+++++++.+.+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 57889999999999999999865 68999999985432 334568999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++...+ .+++..+..++.|+++||+|+| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 91 e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 165 (294)
T 4eqm_A 91 EYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS- 165 (294)
T ss_dssp ECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-----
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc-
Confidence 9999999999987654 4889999999999999999999 8899999999999999999999999999998654322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
........||+.|+||
T Consensus 166 ~~~~~~~~gt~~y~aP 181 (294)
T 4eqm_A 166 LTQTNHVLGTVQYFSP 181 (294)
T ss_dssp ---------CCSSCCH
T ss_pred ccccCccccCccccCH
Confidence 1223446799999998
No 116
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.96 E-value=3.1e-29 Score=256.78 Aligned_cols=166 Identities=28% Similarity=0.362 Sum_probs=144.4
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 502 (599)
++|+..+.||+|+||.||+|+.. +++.||||+++... ....+.+..|+.++.++ +||||+++++++.+.+..|+|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 46888899999999999999976 58999999997542 23456688999999988 899999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+......
T Consensus 89 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~ 164 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYLH---ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG 164 (345)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTT
T ss_pred EeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEEeccccccccCCC
Confidence 99999999999987643 4889999999999999999999 8899999999999999999999999999998643222
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
. .....+||+.|+||
T Consensus 165 ~--~~~~~~gt~~y~aP 179 (345)
T 3a8x_A 165 D--TTSTFCGTPNYIAP 179 (345)
T ss_dssp C--CBCCCCSCGGGCCH
T ss_pred C--cccccCCCccccCc
Confidence 1 23456899999998
No 117
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.96 E-value=5e-29 Score=250.19 Aligned_cols=166 Identities=27% Similarity=0.413 Sum_probs=139.2
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc--------------------------ccHHHHHHHHHHHh
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE--------------------------GAFKSFDIECDMMK 479 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~e~~~l~ 479 (599)
.++|...+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 367889999999999999999875 689999999864421 12356899999999
Q ss_pred cCCCCcceeEEEEEEc--CCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCC
Q 042902 480 RIRHRNLIKIISSCSN--DDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPN 557 (599)
Q Consensus 480 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~ 557 (599)
+++||||+++++++.+ .+..++||||+++|+|.+++... .+++..+..++.||++||+||| +.+|+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK--PLSEDQARFYFQDLIKGIEYLH---YQKIIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHH
Confidence 9999999999999986 56889999999999998876443 4899999999999999999999 889999999999
Q ss_pred CeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 558 NVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 558 Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||+++.++.+||+|||+|+.+..... ......||+.|+||
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aP 206 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAP 206 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCG
T ss_pred HEEECCCCCEEEecCCCccccccccc--cccCCcCCccccCh
Confidence 99999999999999999987643322 23456799999998
No 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.8e-30 Score=274.35 Aligned_cols=234 Identities=21% Similarity=0.198 Sum_probs=125.5
Q ss_pred CCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCC
Q 042902 44 RNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTN 123 (599)
Q Consensus 44 ~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~ 123 (599)
++|++|+|++|.|+.+++. .|..+++|++|+|++|.|++..| | ..+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~--l-------------------------~~l~~ 81 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAA-----DLAPFTKLELLNLSSNVLYETLD--L-------------------------ESLST 81 (487)
T ss_dssp GGCCEEECCSSCCCCCCGG-----GGTTCTTCCEEECTTSCCEEEEE--C-------------------------TTCTT
T ss_pred CCccEEEeeCCcCCCCCHH-----HHhCCCCCCEEEeeCCCCCCCcc--c-------------------------ccCCC
Confidence 3677777777776665543 46666667777777776665433 4 44444
Q ss_pred CCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCC
Q 042902 124 LTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGS 203 (599)
Q Consensus 124 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 203 (599)
|++|+|++|.|+++.+ .++|++|+|++|.|.+..+. .+++|+.|+|++|.+++..|..|..+++|+.|+|++
T Consensus 82 L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 82 LRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (487)
T ss_dssp CCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred CCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence 5555555554443221 14455555555555443332 234455555555555554444455555555555555
Q ss_pred CCCCCC-Ccccc-CCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccC
Q 042902 204 NQLTSI-PSTLW-NLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSI 281 (599)
Q Consensus 204 N~l~~i-p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 281 (599)
|.++.+ |..+. .+++|+.|+|++|.+++.. .+..+++|+.|+|++|.|++.+| .+..+++|+.|+|++|.+++ +
T Consensus 154 N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-E
T ss_pred CCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-c
Confidence 555532 33333 3455555555555555431 12235555556666665554333 35556666666666666653 4
Q ss_pred cccccCCCCcccccCCCCccc-ccCCchhhccccceEEEcc
Q 042902 282 PDSIGGLIDLKSLDLSNNNIS-GAIPISLEKLLDLKYINVS 321 (599)
Q Consensus 282 ~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~l~l~ 321 (599)
|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 445556666666666666665 4555566666666666665
No 119
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.96 E-value=7.1e-29 Score=257.69 Aligned_cols=167 Identities=22% Similarity=0.362 Sum_probs=147.6
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.+.|+..+.||+|+||.||+|... +|+.||+|++..........+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 357899999999999999999876 6899999999766555566899999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC--CCcEEEccccCCccCCcCCC
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD--NMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~--~~~~kl~DFGla~~~~~~~~ 583 (599)
+++|+|.+++......+++..+..++.||++||+||| +.+|+||||||+|||++. ++.+||+|||+|+.+.....
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~ 206 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI 206 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc
Confidence 9999999999876667899999999999999999999 889999999999999974 46899999999987643322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.....||+.||||
T Consensus 207 ---~~~~~gt~~y~aP 219 (387)
T 1kob_A 207 ---VKVTTATAEFAAP 219 (387)
T ss_dssp ---EEEECSSGGGCCH
T ss_pred ---eeeeccCCCccCc
Confidence 2345799999998
No 120
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.96 E-value=4.4e-29 Score=246.53 Aligned_cols=168 Identities=27% Similarity=0.391 Sum_probs=148.0
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
.++|+..+.||+|+||.||+|++.++..||||+++.... ..+++.+|++++.+++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 356888899999999999999998888999999975432 3467999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCcee
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLT 586 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~ 586 (599)
++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+...... ...
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~ 161 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLE---SHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-YVS 161 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-EEE
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCcCcceEEECCCCCEEEccCccceecchhh-hhc
Confidence 999999999876666899999999999999999999 8899999999999999999999999999998664332 223
Q ss_pred eecccCCccccCC
Q 042902 587 QTQTLATIGYMAP 599 (599)
Q Consensus 587 ~~~~~gt~~y~AP 599 (599)
.....+|+.|+||
T Consensus 162 ~~~~~~~~~y~aP 174 (268)
T 3sxs_A 162 SVGTKFPVKWSAP 174 (268)
T ss_dssp CCSCCCCGGGCCH
T ss_pred ccCCCcCcccCCH
Confidence 3455677889998
No 121
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.96 E-value=2.3e-29 Score=248.76 Aligned_cols=167 Identities=26% Similarity=0.397 Sum_probs=147.1
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEccC
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYMP 507 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 507 (599)
++|+..+.||+|+||.||+|++.+++.||||++..... ..+++.+|++++++++||||+++++++.+++..++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence 56888899999999999999998899999999975432 34779999999999999999999999999999999999999
Q ss_pred CCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCceee
Q 042902 508 HGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQ 587 (599)
Q Consensus 508 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~ 587 (599)
+|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+...... ....
T Consensus 89 ~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~ 164 (269)
T 4hcu_A 89 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSS 164 (269)
T ss_dssp TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHST
T ss_pred CCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHH---hCCeecCCcchheEEEcCCCCEEeccccccccccccc-cccc
Confidence 99999999877767899999999999999999999 8899999999999999999999999999998653321 1223
Q ss_pred ecccCCccccCC
Q 042902 588 TQTLATIGYMAP 599 (599)
Q Consensus 588 ~~~~gt~~y~AP 599 (599)
....+|+.|+||
T Consensus 165 ~~~~~~~~y~aP 176 (269)
T 4hcu_A 165 TGTKFPVKWASP 176 (269)
T ss_dssp TSTTCCGGGCCH
T ss_pred cCcccccccCCH
Confidence 445678889998
No 122
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.96 E-value=3.2e-29 Score=252.84 Aligned_cols=167 Identities=31% Similarity=0.467 Sum_probs=136.5
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|++ +|+.||||++.... ....++|.+|++++++++||||+++++++.+.+..++|||
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 114 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTE 114 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEE
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEe
Confidence 45788889999999999999987 58999999986553 3345679999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCC--cCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 505 YMPHGSLEKCLYSSNY--ILDIFQRLNIMIDVASALEYLHFGYSVP--IIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~--iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
|+++|+|.+++..... .+++..+..++.||++||+||| +.+ |+||||||+||+++.++.+||+|||+|+....
T Consensus 115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~ 191 (309)
T 3p86_A 115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH---NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS 191 (309)
T ss_dssp CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHH---TSSSCCCCTTCCGGGEEECTTCCEEECCCC-------
T ss_pred cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH---cCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccc
Confidence 9999999999987543 3889999999999999999999 778 99999999999999999999999999985432
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
.. .......||+.|+||
T Consensus 192 ~~--~~~~~~~gt~~y~aP 208 (309)
T 3p86_A 192 TF--LSSKSAAGTPEWMAP 208 (309)
T ss_dssp ------------CCTTSCH
T ss_pred cc--cccccCCCCccccCh
Confidence 21 223456799999998
No 123
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.96 E-value=1.3e-29 Score=261.51 Aligned_cols=180 Identities=23% Similarity=0.390 Sum_probs=150.5
Q ss_pred cccHHHHHHHhCCCCcCceecccccceEEEEEec------CCcEEEEEEecccc-cccHHHHHHHHHHHhcC-CCCccee
Q 042902 417 RFTHLELFQATNGFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRI-RHRNLIK 488 (599)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~ 488 (599)
.+...++....++|...+.||+|+||.||+|++. +++.||||+++... ....+.+.+|+++++++ +||||++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~ 90 (359)
T 3vhe_A 11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 90 (359)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 3445555566788999999999999999999742 46889999997543 33456799999999999 7999999
Q ss_pred EEEEEEcCC-eeeEEEEccCCCChhhhhhcCCC-----------------------------------------------
Q 042902 489 IISSCSNDD-FKALVLEYMPHGSLEKCLYSSNY----------------------------------------------- 520 (599)
Q Consensus 489 l~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~----------------------------------------------- 520 (599)
+++++.+.+ ..++||||+++|+|.+++.....
T Consensus 91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3vhe_A 91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE 170 (359)
T ss_dssp EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence 999998765 48999999999999999976432
Q ss_pred ------------------cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 521 ------------------ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 521 ------------------~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
.+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~ 247 (359)
T 3vhe_A 171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDP 247 (359)
T ss_dssp -------------CTTTTCBCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCT
T ss_pred cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChhhEEEcCCCcEEEEeccceeeecccc
Confidence 1788899999999999999999 8899999999999999999999999999998765444
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
.........||+.||||
T Consensus 248 ~~~~~~~~~~t~~y~aP 264 (359)
T 3vhe_A 248 DYVRKGDARLPLKWMAP 264 (359)
T ss_dssp TCEEC--CEECGGGCCH
T ss_pred cchhccccCCCceeECh
Confidence 44444566789999998
No 124
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.96 E-value=4.2e-29 Score=256.25 Aligned_cols=168 Identities=23% Similarity=0.272 Sum_probs=145.9
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeee
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 500 (599)
..++|...+.||+|+||.||+|+.. +|+.||||+++.. .....+.+..|.+++..+ +||+|+++++++.+.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 3467999999999999999999986 4889999999754 234567788999999988 7999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+||||++||+|.+++...+ .+++..+..++.||+.||.||| +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus 98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 9999999999999987644 4889999999999999999999 88999999999999999999999999999986432
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
... .....+||+.||||
T Consensus 174 ~~~--~~~~~~gt~~y~aP 190 (353)
T 2i0e_A 174 DGV--TTKTFCGTPDYIAP 190 (353)
T ss_dssp TTC--CBCCCCSCGGGCCH
T ss_pred CCc--ccccccCCccccCh
Confidence 221 23456899999998
No 125
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.96 E-value=5.9e-29 Score=257.47 Aligned_cols=162 Identities=24% Similarity=0.433 Sum_probs=138.5
Q ss_pred cCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEccCCCC
Q 042902 432 ENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYMPHGS 510 (599)
Q Consensus 432 ~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g~ 510 (599)
..+.||+|+||.||+|... +|+.||||+++.......+.+.+|++++++++||||+++++++.+.+..++||||+++|+
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~ 172 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGE 172 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCE
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCc
Confidence 3568999999999999875 689999999987655566789999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee--cCCCcEEEccccCCccCCcCCCceeee
Q 042902 511 LEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL--DDNMVAHLSDFGMAKPLLKEDQSLTQT 588 (599)
Q Consensus 511 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill--~~~~~~kl~DFGla~~~~~~~~~~~~~ 588 (599)
|.+++......+++..+..++.||++||+||| +.+|+||||||+|||+ +.++.+||+|||+|+.+..... ..
T Consensus 173 L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~ 246 (373)
T 2x4f_A 173 LFDRIIDESYNLTELDTILFMKQICEGIRHMH---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LK 246 (373)
T ss_dssp EHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---CC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---cc
Confidence 99998876667899999999999999999999 8899999999999999 5678999999999987643322 23
Q ss_pred cccCCccccCC
Q 042902 589 QTLATIGYMAP 599 (599)
Q Consensus 589 ~~~gt~~y~AP 599 (599)
...||+.|+||
T Consensus 247 ~~~gt~~y~aP 257 (373)
T 2x4f_A 247 VNFGTPEFLAP 257 (373)
T ss_dssp CCCSSCTTCCH
T ss_pred cccCCCcEeCh
Confidence 45799999998
No 126
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.96 E-value=5.5e-29 Score=255.31 Aligned_cols=163 Identities=24% Similarity=0.321 Sum_probs=144.7
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|+++++.++||||+++++++.+.+..|+||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 56888999999999999999976 69999999996542 345678899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus 121 e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~-- 194 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-- 194 (350)
T ss_dssp ECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC--
T ss_pred cCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccccCccceEEECCCCCEEEcccccceeccCC--
Confidence 9999999999997644 4888999999999999999999 899999999999999999999999999999865332
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
....+||+.||||
T Consensus 195 ---~~~~~gt~~y~aP 207 (350)
T 1rdq_E 195 ---TWTLCGTPEALAP 207 (350)
T ss_dssp ---BCCCEECGGGCCH
T ss_pred ---cccccCCccccCH
Confidence 2345799999998
No 127
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.96 E-value=1e-28 Score=247.24 Aligned_cols=166 Identities=27% Similarity=0.384 Sum_probs=143.4
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
++|+..+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 46888999999999999999976 68999999997543 3345778999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++ ++.+.+......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH---~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCH---SRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV-- 155 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC--
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc--
Confidence 9975 666666655556899999999999999999999 8899999999999999999999999999998654322
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 156 ~~~~~~~~t~~y~aP 170 (292)
T 3o0g_A 156 RCYSAEVVTLWYRPP 170 (292)
T ss_dssp SCCCSCCSCGGGCCH
T ss_pred ccccCCccccCCcCh
Confidence 223456789999998
No 128
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.96 E-value=3e-29 Score=250.58 Aligned_cols=166 Identities=26% Similarity=0.392 Sum_probs=141.8
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
++|+..+.||+|+||.||+|+..+|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 4688889999999999999999889999999986543 23357789999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCce
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSL 585 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~ 585 (599)
+++ +|.+++......+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+...... .
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~ 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH---DRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV--R 155 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEeECccccccCccc--c
Confidence 975 999998876667899999999999999999999 8899999999999999999999999999998653221 1
Q ss_pred eeecccCCccccCC
Q 042902 586 TQTQTLATIGYMAP 599 (599)
Q Consensus 586 ~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 156 ~~~~~~~t~~y~aP 169 (288)
T 1ob3_A 156 KYTHEIVTLWYRAP 169 (288)
T ss_dssp ------CCCTTCCH
T ss_pred ccccccccccccCc
Confidence 22445789999998
No 129
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.96 E-value=3.7e-29 Score=254.59 Aligned_cols=167 Identities=26% Similarity=0.402 Sum_probs=135.2
Q ss_pred hCCCCcCceecccccceEEEEEe----cCCcEEEEEEecccc----cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe
Q 042902 427 TNGFSENNLIGRGGVASVYKARI----QDGIEVAVKVFDLQY----EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 498 (599)
.++|+..+.||+|+||.||+|+. .+|+.||+|+++... ......+..|++++++++||||+++++++.+.+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 35788999999999999999987 478999999997542 2344568889999999999999999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.|+||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+|+..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHLH---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHH---hCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 999999999999999987644 4788889999999999999999 889999999999999999999999999999854
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... ......||+.||||
T Consensus 172 ~~~~~--~~~~~~gt~~y~aP 190 (327)
T 3a62_A 172 IHDGT--VTHTFCGTIEYMAP 190 (327)
T ss_dssp ---------CTTSSCCTTSCH
T ss_pred ccCCc--cccccCCCcCccCH
Confidence 32221 23456799999998
No 130
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.96 E-value=3e-29 Score=257.04 Aligned_cols=171 Identities=27% Similarity=0.438 Sum_probs=146.1
Q ss_pred HhCCCCcCceecccccceEEEEEec------CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF 498 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 498 (599)
..++|...+.||+|+||.||+|+.. +++.||||+++... ....+.|.+|++++++++||||+++++++.+.+.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 3568999999999999999999875 34889999997553 3345789999999999999999999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCC-----------------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCC
Q 042902 499 KALVLEYMPHGSLEKCLYSSN-----------------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLK 555 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk 555 (599)
.++||||+++|+|.+++.... ..+++..+..++.||++||.||| +.+|+|||||
T Consensus 125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlk 201 (343)
T 1luf_A 125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLA 201 (343)
T ss_dssp CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCS
T ss_pred eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCC
Confidence 999999999999999997632 45889999999999999999999 8899999999
Q ss_pred CCCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 556 PNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 556 ~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+||+++.++.+||+|||+++...............+|+.|+||
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP 245 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPP 245 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred cceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecCh
Confidence 99999999999999999999866443332333456789999998
No 131
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.96 E-value=2.2e-29 Score=252.38 Aligned_cols=169 Identities=27% Similarity=0.442 Sum_probs=141.9
Q ss_pred CCCCcCceecccccceEEEEEe-----cCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcC--Ceee
Q 042902 428 NGFSENNLIGRGGVASVYKARI-----QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~ 500 (599)
++|+..+.||+|+||.||+|++ .+++.||||++........+.|.+|++++++++||||+++++++... ...+
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 89 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence 5688889999999999999984 26889999999866666677899999999999999999999998654 4689
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+||||+++|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 90 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 166 (295)
T 3ugc_A 90 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ 166 (295)
T ss_dssp EEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCSCC----
T ss_pred EEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHhhEEEcCCCeEEEccCcccccccC
Confidence 999999999999999887667899999999999999999999 88999999999999999999999999999987643
Q ss_pred CCCc-eeeecccCCccccCC
Q 042902 581 EDQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~-~~~~~~~gt~~y~AP 599 (599)
.... .......+|+.|+||
T Consensus 167 ~~~~~~~~~~~~~~~~y~aP 186 (295)
T 3ugc_A 167 DKEFFKVKEPGESPIFWYAP 186 (295)
T ss_dssp ---------CTTCGGGGCCH
T ss_pred CcceeeeccCCCCccceeCc
Confidence 3221 222345578889998
No 132
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.96 E-value=2.5e-28 Score=242.23 Aligned_cols=209 Identities=25% Similarity=0.274 Sum_probs=120.6
Q ss_pred CCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecC
Q 042902 123 NLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLG 202 (599)
Q Consensus 123 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 202 (599)
+|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34455555555544444444455555555555555544444445555555555555555554444455555555555555
Q ss_pred CCCCCCCCc-cccCCCcccEEeecCCCcccc-CcccccccccccEEEccCCccCCCCCccccCccccc----cccccccc
Q 042902 203 SNQLTSIPS-TLWNLKYILYLNLSSNSFTGP-LPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQ----YLFLEYNR 276 (599)
Q Consensus 203 ~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L~~N~ 276 (599)
+|.++.++. .+..+++|++|++++|.+++. .|..|.++++|+.|+|++|.+++..+..+..+.+|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 555554433 344555555555555555543 355555566666666666666655555555555555 56667777
Q ss_pred ccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCCCC
Q 042902 277 LQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIPRE 332 (599)
Q Consensus 277 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 332 (599)
+++..+..+.. .+|+.|+|++|++++..+..|..+++|+.|++++|+++|.+|..
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 76555544443 36777777777777666666777888888888888888777643
No 133
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.96 E-value=9.6e-29 Score=266.53 Aligned_cols=167 Identities=26% Similarity=0.400 Sum_probs=146.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|...+.||+|+||.||+|+.. +|+.||||++... .......+.+|++++++++|||||++++++.+.+..|+|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 356888899999999999999976 6999999999653 233456789999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 503 LEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
|||++||+|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH---~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 999999999999876543 4899999999999999999999 889999999999999999999999999999876433
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
. .....+||+.||||
T Consensus 340 ~---~~~~~~GT~~Y~AP 354 (576)
T 2acx_A 340 Q---TIKGRVGTVGYMAP 354 (576)
T ss_dssp C---CEECCCSCGGGCCH
T ss_pred c---cccccCCCccccCH
Confidence 2 23446899999998
No 134
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.7e-29 Score=258.34 Aligned_cols=170 Identities=28% Similarity=0.434 Sum_probs=146.7
Q ss_pred hCCCCcCceecccccceEEEEEec--------CCcEEEEEEecccc-cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcC
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ--------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRI-RHRNLIKIISSCSND 496 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 496 (599)
.++|...+.||+|+||.||+|++. ++..||||+++... ....+++.+|+++++++ +||||+++++++.++
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 357888899999999999999853 34679999997553 33457899999999999 899999999999999
Q ss_pred CeeeEEEEccCCCChhhhhhcCC---------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee
Q 042902 497 DFKALVLEYMPHGSLEKCLYSSN---------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL 561 (599)
Q Consensus 497 ~~~~lv~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill 561 (599)
+..++||||+++|+|.+++.... ..+++..+..++.||++||+||| +.+|+||||||+|||+
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 224 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLV 224 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEE
T ss_pred CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCcceEEE
Confidence 99999999999999999997653 34899999999999999999999 8899999999999999
Q ss_pred cCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 562 DDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 562 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.++.+||+|||+|+...............+|+.|+||
T Consensus 225 ~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aP 262 (382)
T 3tt0_A 225 TEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAP 262 (382)
T ss_dssp CTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCH
T ss_pred cCCCcEEEcccCcccccccccccccccCCCCCcceeCH
Confidence 99999999999999876544333344556788999998
No 135
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.2e-28 Score=248.71 Aligned_cols=165 Identities=26% Similarity=0.392 Sum_probs=144.5
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc------ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE------GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
+.|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+.++++++||||+++++++.+.+..+
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 90 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI 90 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 45888899999999999999976 689999999865422 24678999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC----cEEEccccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM----VAHLSDFGMAK 576 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~----~~kl~DFGla~ 576 (599)
+||||+++|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++ .+||+|||+|+
T Consensus 91 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~ 166 (326)
T 2y0a_A 91 LILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH 166 (326)
T ss_dssp EEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHH---HCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCe
Confidence 9999999999999987643 5889999999999999999999 88999999999999999887 89999999998
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
...... ......||+.||||
T Consensus 167 ~~~~~~---~~~~~~gt~~y~aP 186 (326)
T 2y0a_A 167 KIDFGN---EFKNIFGTPEFVAP 186 (326)
T ss_dssp ECCTTS---CCCCCCSCTTTCCH
T ss_pred ECCCCC---ccccccCCcCcCCc
Confidence 764332 22346799999998
No 136
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.96 E-value=1e-28 Score=249.80 Aligned_cols=170 Identities=25% Similarity=0.428 Sum_probs=146.7
Q ss_pred hCCCCcCceecccccceEEEEEe------cCCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee
Q 042902 427 TNGFSENNLIGRGGVASVYKARI------QDGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 499 (599)
.++|...+.||+|+||.||+|.. .+++.||||+++... ....+++.+|++++++++||||+++++++.+.+..
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 101 (314)
T 2ivs_A 22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL 101 (314)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence 45688889999999999999986 245889999997543 34457899999999999999999999999999999
Q ss_pred eEEEEccCCCChhhhhhcCCC-----------------------cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNY-----------------------ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKP 556 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~-----------------------~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~ 556 (599)
++||||+++|+|.+++..... .+++..+..++.||++||.||| +.+|+||||||
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dikp 178 (314)
T 2ivs_A 102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAA 178 (314)
T ss_dssp EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHH---HTTEECCCCSG
T ss_pred EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHH---HCCCcccccch
Confidence 999999999999999976432 3788899999999999999999 88999999999
Q ss_pred CCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 557 NNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 557 ~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+||+++.++.+||+|||+|+...............+|+.|+||
T Consensus 179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 221 (314)
T 2ivs_A 179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAI 221 (314)
T ss_dssp GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCH
T ss_pred heEEEcCCCCEEEccccccccccccccceeccCCCCcccccCh
Confidence 9999999999999999999876544433334455678899998
No 137
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.96 E-value=8.5e-29 Score=254.42 Aligned_cols=167 Identities=25% Similarity=0.389 Sum_probs=142.8
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-----cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-----EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
+.|+..+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..|+
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 46888999999999999999875 68999999986431 2246789999999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhcC---CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc---EEEccccCC
Q 042902 502 VLEYMPHGSLEKCLYSS---NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV---AHLSDFGMA 575 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~---~kl~DFGla 575 (599)
||||+++|+|.+.+... ...+++..+..++.||++||+||| +.+|+||||||+||+++.++. +||+|||+|
T Consensus 104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a 180 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVA 180 (351)
T ss_dssp EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECSSSTTCCEEECCCTTC
T ss_pred EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChHHeEEecCCCCCcEEEecCcce
Confidence 99999999998877542 234788999999999999999999 889999999999999986654 999999999
Q ss_pred ccCCcCCCceeeecccCCccccCC
Q 042902 576 KPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 576 ~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+...... .......||+.||||
T Consensus 181 ~~~~~~~--~~~~~~~gt~~y~aP 202 (351)
T 3c0i_A 181 IQLGESG--LVAGGRVGTPHFMAP 202 (351)
T ss_dssp EECCTTS--CBCCCCCSCGGGCCH
T ss_pred eEecCCC--eeecCCcCCcCccCH
Confidence 8764332 223456799999998
No 138
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=8.6e-29 Score=252.13 Aligned_cols=164 Identities=25% Similarity=0.397 Sum_probs=143.3
Q ss_pred CCCCcCceecccccceEEEEEe-cCCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|.+ .+|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5788999999999999999997 478999999986432 233467899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+ +|+|.+++...+ .+++..+..++.||++||.||| +.+|+||||||+||++++++.+||+|||+|+.......
T Consensus 89 E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~ 163 (336)
T 3h4j_B 89 EYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYCH---RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF 163 (336)
T ss_dssp CCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT
T ss_pred ECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc
Confidence 999 789988887644 4889999999999999999999 88999999999999999999999999999986543322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
....+||+.|+||
T Consensus 164 ---~~~~~gt~~y~aP 176 (336)
T 3h4j_B 164 ---LKTSCGSPNYAAP 176 (336)
T ss_dssp ---TCCCTTSTTTSCG
T ss_pred ---cccccCCcCcCCH
Confidence 2345799999998
No 139
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=260.80 Aligned_cols=168 Identities=21% Similarity=0.356 Sum_probs=144.2
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
..++|...+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|++++++++|||||++++++.+++..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 3457889999999999999999865 68999999997543 23456789999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec---CCCcEEEccccCCccCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD---DNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~---~~~~~kl~DFGla~~~~ 579 (599)
|||+++|+|.+.+...+ .+++..+..++.||++||.||| +.+|+||||||+|||++ .++.+||+|||+|+...
T Consensus 89 ~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~lH---~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp ECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred EEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 99999999999888754 4889999999999999999999 88999999999999998 46789999999998664
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
.... ......||+.||||
T Consensus 165 ~~~~--~~~~~~gt~~Y~AP 182 (444)
T 3soa_A 165 GEQQ--AWFGFAGTPGYLSP 182 (444)
T ss_dssp TTCC--BCCCSCSCGGGCCH
T ss_pred CCCc--eeecccCCcccCCH
Confidence 3322 23456899999998
No 140
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.95 E-value=1.3e-28 Score=253.87 Aligned_cols=166 Identities=22% Similarity=0.464 Sum_probs=144.3
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~ 107 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 107 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 457889999999999999999876 68999999997543 334567899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC---cEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM---VAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~---~~kl~DFGla~~~~~ 580 (599)
||+++|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++ .+||+|||+|+....
T Consensus 108 e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~ 183 (362)
T 2bdw_A 108 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 183 (362)
T ss_dssp CCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC
Confidence 9999999999887654 4889999999999999999999 88999999999999998654 599999999986643
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
.. ......||+.||||
T Consensus 184 ~~---~~~~~~gt~~y~aP 199 (362)
T 2bdw_A 184 SE---AWHGFAGTPGYLSP 199 (362)
T ss_dssp CC---SCCCSCSCTTTCCH
T ss_pred Cc---ccccCCCCccccCH
Confidence 22 22346799999998
No 141
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=9.1e-29 Score=253.60 Aligned_cols=171 Identities=25% Similarity=0.420 Sum_probs=145.4
Q ss_pred HhCCCCcCceecccccceEEEEEec------CCcEEEEEEecccc-cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCC
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDD 497 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 497 (599)
..++|...+.||+|+||.||+|.+. +++.||||+++... ....+.+.+|+++++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 4567888999999999999999862 46689999997542 33457899999999999 8999999999999999
Q ss_pred eeeEEEEccCCCChhhhhhcCCC----------------------cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCC
Q 042902 498 FKALVLEYMPHGSLEKCLYSSNY----------------------ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLK 555 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk 555 (599)
..++||||+++|+|.+++..... .+++..+..++.||++||+||| +.+|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHH---HTTEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCC
Confidence 99999999999999999976542 3788899999999999999999 8899999999
Q ss_pred CCCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 556 PNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 556 ~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+||+++.++.+||+|||+|+...............||+.|+||
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP 243 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAP 243 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCH
Confidence 99999999999999999999876544443444556688999998
No 142
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.95 E-value=1.4e-28 Score=249.19 Aligned_cols=167 Identities=28% Similarity=0.433 Sum_probs=130.4
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|... +|+.||||+++... ....+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 457899999999999999999865 68999999997543 3345778999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCC-----CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 505 YMPHGSLEKCLYSSN-----YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
|++ |+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+...
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 998 59998886432 34788899999999999999999 8899999999999999999999999999998654
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
.... ......||+.|+||
T Consensus 160 ~~~~--~~~~~~~t~~y~aP 177 (317)
T 2pmi_A 160 IPVN--TFSSEVVTLWYRAP 177 (317)
T ss_dssp SCCC--CCCCCCSCCTTCCH
T ss_pred CCcc--cCCCCcccccccCc
Confidence 3221 23445789999998
No 143
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.2e-29 Score=260.36 Aligned_cols=169 Identities=24% Similarity=0.394 Sum_probs=143.1
Q ss_pred CCCCcCceecccccceEEEEEec------CCcEEEEEEeccc-ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQ-YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
++|...+.||+|+||.||+|++. +++.||||+++.. ......++..|+.++++++|||||++++++...+..+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 150 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 150 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence 46888899999999999999853 4678999999654 3344567999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCC------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC---cEEEcc
Q 042902 501 LVLEYMPHGSLEKCLYSSN------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM---VAHLSD 571 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~---~~kl~D 571 (599)
+||||+++|+|.+++.... ..+++..+..++.||++||+||| +.+|+||||||+|||++.++ .+||+|
T Consensus 151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kL~D 227 (367)
T 3l9p_A 151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIGD 227 (367)
T ss_dssp EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECC
T ss_pred EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEEecCCCCceEEECC
Confidence 9999999999999997543 35889999999999999999999 88999999999999999555 599999
Q ss_pred ccCCccCCcCCCceeeecccCCccccCC
Q 042902 572 FGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 572 FGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||+|+.+.............||+.||||
T Consensus 228 FG~a~~~~~~~~~~~~~~~~~t~~y~aP 255 (367)
T 3l9p_A 228 FGMARDIYRAGYYRKGGCAMLPVKWMPP 255 (367)
T ss_dssp CHHHHHHHHHSSCTTCCGGGSCGGGCCH
T ss_pred CccccccccccccccCCCcCCcccEECH
Confidence 9999865333322233456789999998
No 144
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.95 E-value=6.7e-29 Score=247.30 Aligned_cols=168 Identities=24% Similarity=0.388 Sum_probs=144.0
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
.++|+..+.||+|+||.||+|++.++..||||+++.... ..+++.+|++++++++||||+++++++.+.+..++||||+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 101 (283)
T 3gen_A 23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM 101 (283)
T ss_dssp GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence 456888899999999999999999888999999975432 3477999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCcee
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLT 586 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~ 586 (599)
++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++...... ...
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~ 177 (283)
T 3gen_A 102 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLE---SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YTS 177 (283)
T ss_dssp TTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HHS
T ss_pred CCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCccceEEEcCCCCEEEccccccccccccc-ccc
Confidence 999999999875556899999999999999999999 8899999999999999999999999999998654322 122
Q ss_pred eecccCCccccCC
Q 042902 587 QTQTLATIGYMAP 599 (599)
Q Consensus 587 ~~~~~gt~~y~AP 599 (599)
.....+|+.|+||
T Consensus 178 ~~~~~~~~~y~aP 190 (283)
T 3gen_A 178 SVGSKFPVRWSPP 190 (283)
T ss_dssp TTSTTSCGGGCCH
T ss_pred ccCCccCcccCCH
Confidence 2345578889998
No 145
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=7.4e-28 Score=238.90 Aligned_cols=207 Identities=21% Similarity=0.213 Sum_probs=170.1
Q ss_pred cceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEee
Q 042902 99 SMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLG 178 (599)
Q Consensus 99 ~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 178 (599)
.++.|++++|++++..+..|.++++|++|+|++|.++++.+.+|..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35555555555555555667778888888888888887777788888888888888888887777888888888888888
Q ss_pred CCccCCCCCcccCCCCCCcEeecCCCCCCC--CCccccCCCcccEEeecCCCccccCccccccccccc----EEEccCCc
Q 042902 179 GNKLSGFVPACFGNLTSLRNLYLGSNQLTS--IPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLV----QIDLSMNN 252 (599)
Q Consensus 179 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~Ls~N~ 252 (599)
+|.+++..+..|..+++|++|++++|.++. +|..+..+++|++|++++|++++..+..|..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 888888777778888899999999998886 577888889999999999999888888888777777 89999999
Q ss_pred cCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCC
Q 042902 253 FSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIP 306 (599)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 306 (599)
+++..+..+.. .+|++|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99776666654 489999999999998877888999999999999999986554
No 146
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.95 E-value=7.2e-29 Score=256.32 Aligned_cols=166 Identities=31% Similarity=0.396 Sum_probs=134.9
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHH-HhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDM-MKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
++|+..+.||+|+||.||+|+.. +++.||||+++... ....+.+..|..+ ++.++||||+++++++.+.+..|+|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 46888999999999999999976 58899999997543 2234556777776 5778999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||++||+|.+++.... .+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+......
T Consensus 118 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~ 193 (373)
T 2r5t_A 118 LDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYLH---SLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHN 193 (373)
T ss_dssp EECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCC
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEECCCCCEEEeeCccccccccCC
Confidence 99999999999987643 4788888999999999999999 8999999999999999999999999999998643222
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......+||+.||||
T Consensus 194 --~~~~~~~gt~~y~aP 208 (373)
T 2r5t_A 194 --STTSTFCGTPEYLAP 208 (373)
T ss_dssp --CCCCSBSCCCCCCCH
T ss_pred --CccccccCCccccCH
Confidence 123456899999998
No 147
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.95 E-value=1.9e-28 Score=263.64 Aligned_cols=167 Identities=26% Similarity=0.405 Sum_probs=146.2
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+..|++++++++||||+++++++.+.+..|+||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 56888899999999999999976 69999999996542 234578899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCC---CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSN---YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
||++||+|.+++.... ..+++..+..++.||+.||.||| +.+|+||||||+|||++.++.+||+|||+|+.+..
T Consensus 265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH---~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~ 341 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA 341 (543)
T ss_dssp CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHH---HcCCcccCCChHHEEEeCCCCEEEeecceeeeccC
Confidence 9999999999987543 35889999999999999999999 88999999999999999999999999999987643
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
... .....+||+.||||
T Consensus 342 ~~~--~~~~~~GT~~Y~AP 358 (543)
T 3c4z_A 342 GQT--KTKGYAGTPGFMAP 358 (543)
T ss_dssp TCC--CBCCCCSCTTTSCH
T ss_pred CCc--ccccccCCccccCh
Confidence 322 22345899999998
No 148
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.95 E-value=4.3e-29 Score=265.22 Aligned_cols=167 Identities=26% Similarity=0.344 Sum_probs=135.3
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|+..+.||+|+||.||+|+.. +|+.||||+++.. .......+..|+++++.++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 356888999999999999999865 6899999999653 233456788999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYS-VPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~-~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||++|+|.+++.... .+++..+..++.||++||+||| + .+|+||||||+|||++.++.+||+|||+|+.....
T Consensus 227 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYLH---SEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp ECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHh---hcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 99999999999887644 4889999999999999999999 7 89999999999999999999999999999864332
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
. ......+||+.||||
T Consensus 303 ~--~~~~~~~gt~~y~aP 318 (446)
T 4ejn_A 303 G--ATMKTFCGTPEYLAP 318 (446)
T ss_dssp ------CCSSSCGGGCCH
T ss_pred C--cccccccCCccccCH
Confidence 2 223457899999998
No 149
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.95 E-value=2.5e-28 Score=259.72 Aligned_cols=165 Identities=27% Similarity=0.414 Sum_probs=146.0
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|++. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 56888899999999999999976 79999999996442 234568899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 96 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~- 170 (476)
T 2y94_A 96 EYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE- 170 (476)
T ss_dssp ECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC-
T ss_pred eCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcccccHHHEEEecCCCeEEEeccchhhccccc-
Confidence 9999999999997644 4899999999999999999999 8999999999999999999999999999998764332
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.....+||+.|+||
T Consensus 171 --~~~~~~gt~~y~aP 184 (476)
T 2y94_A 171 --FLRTSCGSPNYAAP 184 (476)
T ss_dssp --CBCCCCSCSTTCCH
T ss_pred --cccccCCCcCeECh
Confidence 22345799999998
No 150
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=248.26 Aligned_cols=166 Identities=27% Similarity=0.445 Sum_probs=143.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC--eeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--FKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ 503 (599)
++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 46888899999999999999976 58999999997543 344677899999999999999999999988665 779999
Q ss_pred EccCCCChhhhhhcCCC--cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee----cCCCcEEEccccCCcc
Q 042902 504 EYMPHGSLEKCLYSSNY--ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL----DDNMVAHLSDFGMAKP 577 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill----~~~~~~kl~DFGla~~ 577 (599)
||+++|+|.+++..... .+++..+..++.||++||+||| +.+|+||||||+||++ +.++.+||+|||+|+.
T Consensus 89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~ 165 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (319)
T ss_dssp ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEE
T ss_pred eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEEeccCCCCceEEEccCCCcee
Confidence 99999999999976443 3899999999999999999999 8899999999999999 7888899999999987
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
...... .....||+.|+||
T Consensus 166 ~~~~~~---~~~~~gt~~y~aP 184 (319)
T 4euu_A 166 LEDDEQ---FVSLYGTEEYLHP 184 (319)
T ss_dssp CCTTCC---BCCCCSCGGGCCH
T ss_pred cCCCCc---eeecccCCCccCH
Confidence 644322 2345799999998
No 151
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=248.97 Aligned_cols=165 Identities=24% Similarity=0.268 Sum_probs=138.7
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||+||+|++. +|+.||||++.... ......+..|+..+.++ +||||++++++|.+++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 46888999999999999999976 79999999986542 22334556666666555 8999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+ +|+|.+++......+++..+..++.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+......
T Consensus 137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~- 211 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLH---SQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG- 211 (311)
T ss_dssp ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECGGGCEEECCCTTCEECC----
T ss_pred ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC-
Confidence 999 77999988876667999999999999999999999 8899999999999999999999999999998654322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......||++|+||
T Consensus 212 --~~~~~~gt~~y~aP 225 (311)
T 3p1a_A 212 --AGEVQEGDPRYMAP 225 (311)
T ss_dssp -----CCCCCGGGCCG
T ss_pred --CCcccCCCccccCH
Confidence 23445699999998
No 152
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.95 E-value=2.1e-28 Score=249.89 Aligned_cols=170 Identities=28% Similarity=0.457 Sum_probs=145.6
Q ss_pred hCCCCcCceecccccceEEEEEec--------CCcEEEEEEecccc-cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcC
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ--------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRI-RHRNLIKIISSCSND 496 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~ 496 (599)
.++|...+.||+|+||.||+|++. +++.||||+++... ....+++.+|+++++++ +||||+++++++...
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 113 (334)
T 2pvf_A 34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 113 (334)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence 467888999999999999999863 46789999997543 34457799999999999 899999999999999
Q ss_pred CeeeEEEEccCCCChhhhhhcCCC---------------cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee
Q 042902 497 DFKALVLEYMPHGSLEKCLYSSNY---------------ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL 561 (599)
Q Consensus 497 ~~~~lv~e~~~~g~L~~~l~~~~~---------------~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill 561 (599)
+..++||||+++|+|.+++..... .+++..+..++.||++||.||| +.+|+||||||+||++
T Consensus 114 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll 190 (334)
T 2pvf_A 114 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLV 190 (334)
T ss_dssp SCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEE
T ss_pred CceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCccceEEE
Confidence 999999999999999999976432 3788999999999999999999 8899999999999999
Q ss_pred cCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 562 DDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 562 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.++.+||+|||+|+...............+|+.|+||
T Consensus 191 ~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 228 (334)
T 2pvf_A 191 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAP 228 (334)
T ss_dssp CTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCH
T ss_pred cCCCCEEEccccccccccccccccccCCCCcccceeCh
Confidence 99999999999999876544433334455678899998
No 153
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.95 E-value=1.8e-28 Score=249.94 Aligned_cols=166 Identities=23% Similarity=0.322 Sum_probs=143.7
Q ss_pred CCCCcCceecccccceEEEEEe-cCCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEEEEc
Q 042902 428 NGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
++|...+.||+|+||.||+|+. .+|+.||||++..... .+.+..|+++++++ +||||+++++++...+..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~ 86 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL 86 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence 5788899999999999999996 4789999999865432 34688999999999 999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc-----EEEccccCCccCCc
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV-----AHLSDFGMAKPLLK 580 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~-----~kl~DFGla~~~~~ 580 (599)
+ +|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+|||++.++. +||+|||+|+.+..
T Consensus 87 ~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~ 162 (330)
T 2izr_A 87 L-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVH---SKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYID 162 (330)
T ss_dssp C-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBC
T ss_pred C-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeec
Confidence 9 99999999876567999999999999999999999 889999999999999998887 99999999987644
Q ss_pred CCCce-----eeecccCCccccCC
Q 042902 581 EDQSL-----TQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~-----~~~~~~gt~~y~AP 599 (599)
..... ......||+.||||
T Consensus 163 ~~~~~~~~~~~~~~~~gt~~y~aP 186 (330)
T 2izr_A 163 PETKKHIPYREHKSLTGTARYMSI 186 (330)
T ss_dssp TTTCCBCCCCCCCCCCSCTTTCCH
T ss_pred CCCCccccccccCCcCCCccccCh
Confidence 32211 12456899999998
No 154
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.95 E-value=2.2e-28 Score=246.52 Aligned_cols=167 Identities=28% Similarity=0.465 Sum_probs=138.8
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|...+.||+|+||.||+|++. ..||+|+++... ....+.|.+|++++++++||||+++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 457888999999999999999865 469999886542 334578999999999999999999999875 456899999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++|+|.+++......+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+........
T Consensus 112 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~~ 188 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLH---AKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGS 188 (307)
T ss_dssp CCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCSSSEEECTTSCEEECCCCSSCC-------
T ss_pred cCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeeCCCChhhEEEcCCCCEEEccCCCceeccccccc
Confidence 99999999999877777999999999999999999999 889999999999999999999999999999865432323
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 189 ~~~~~~~gt~~y~aP 203 (307)
T 3lb7_A 189 QQVEQPTGSVLWMAP 203 (307)
T ss_dssp -----CCCCTTSCCH
T ss_pred ccccCCCCCcceECc
Confidence 333456799999998
No 155
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.95 E-value=7e-29 Score=252.58 Aligned_cols=168 Identities=24% Similarity=0.375 Sum_probs=136.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcE----EEEEEeccc-ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIE----VAVKVFDLQ-YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~----vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
++|+..+.||+|+||.||+|++. +++. ||+|.++.. .....++|.+|++++++++||||++++++|.+.+ .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence 46888899999999999999864 3443 688887543 2345678999999999999999999999998765 789
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
|+||+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 94 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~ 170 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE 170 (327)
T ss_dssp EEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTT
T ss_pred EEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCChheEEECCCCCEEEccCcceeEccCC
Confidence 99999999999999887777999999999999999999999 889999999999999999999999999999876544
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
..........+|+.|+||
T Consensus 171 ~~~~~~~~~~~t~~y~aP 188 (327)
T 3poz_A 171 EKEYHAEGGKVPIKWMAL 188 (327)
T ss_dssp CC-------CCCGGGSCH
T ss_pred cccccccCCCccccccCh
Confidence 443344556678899998
No 156
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.95 E-value=1.3e-28 Score=248.78 Aligned_cols=170 Identities=24% Similarity=0.397 Sum_probs=147.1
Q ss_pred hCCCCcCceecccccceEEEEEe------cCCcEEEEEEeccccc-ccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCe
Q 042902 427 TNGFSENNLIGRGGVASVYKARI------QDGIEVAVKVFDLQYE-GAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 498 (599)
.++|...+.||+|+||.||+|++ .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++.+.+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~ 101 (313)
T 1t46_A 22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGP 101 (313)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred hhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCC
Confidence 45788889999999999999985 2578999999975532 3457899999999999 89999999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCCC-----------------cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee
Q 042902 499 KALVLEYMPHGSLEKCLYSSNY-----------------ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL 561 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill 561 (599)
.++||||+++|+|.+++..... .+++..+..++.||++||.||| +.+|+||||||+||++
T Consensus 102 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~ 178 (313)
T 1t46_A 102 TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILL 178 (313)
T ss_dssp CEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEE
T ss_pred cEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCccceEEE
Confidence 9999999999999999976542 3789999999999999999999 8899999999999999
Q ss_pred cCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 562 DDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 562 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.++.+||+|||+|+...............+|+.|+||
T Consensus 179 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 216 (313)
T 1t46_A 179 THGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAP 216 (313)
T ss_dssp ETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCH
T ss_pred cCCCCEEEccccccccccccccceeccCCCCcceeeCh
Confidence 99999999999999876554433334455678899998
No 157
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.95 E-value=2.1e-28 Score=252.32 Aligned_cols=165 Identities=24% Similarity=0.311 Sum_probs=136.1
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.++|...+.||+|+||.||+|+.. +++.||||++..... ..+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 467999999999999999999976 789999999965432 346788999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc--EEEccccCCccCCcCCC
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV--AHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~--~kl~DFGla~~~~~~~~ 583 (599)
+++|+|.+++...+ .+++..+..++.|+++||+||| +.+|+||||||+||+++.++. +||+|||+|+......
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~LH---~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~- 172 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH---SMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS- 172 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC-
Confidence 99999999987644 4889999999999999999999 899999999999999987765 9999999998433221
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......||+.||||
T Consensus 173 --~~~~~~gt~~y~aP 186 (361)
T 3uc3_A 173 --QPKSTVGTPAYIAP 186 (361)
T ss_dssp ----------CTTSCH
T ss_pred --CCCCCcCCCCcCCh
Confidence 22445799999998
No 158
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.95 E-value=4e-28 Score=240.88 Aligned_cols=166 Identities=27% Similarity=0.385 Sum_probs=146.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.++|+..+.||+|+||.||+|... ++..||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 356888999999999999999976 4789999999776666678899999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee---cCCCcEEEccccCCccCCcCC
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---DDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---~~~~~~kl~DFGla~~~~~~~ 582 (599)
+++++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||++ +.++.+||+|||+|+.+....
T Consensus 88 ~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~ 163 (277)
T 3f3z_A 88 CTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK 163 (277)
T ss_dssp CCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence 99999999887644 4789999999999999999999 8899999999999999 788899999999998664332
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 164 ---~~~~~~~t~~y~aP 177 (277)
T 3f3z_A 164 ---MMRTKVGTPYYVSP 177 (277)
T ss_dssp ---CBCCCCSCTTTCCH
T ss_pred ---chhccCCCCCccCh
Confidence 22345799999998
No 159
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.95 E-value=1.2e-28 Score=246.09 Aligned_cols=163 Identities=26% Similarity=0.421 Sum_probs=144.3
Q ss_pred CCCCcCceecccccceEEEEEecC-C-------cEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQD-G-------IEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 499 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 499 (599)
++|...+.||+|+||.||+|.... + ..||+|++........+.+.+|++++++++||||+++++++.+++..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 468888999999999999998653 3 57999999776666778899999999999999999999999999999
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc--------EEEcc
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV--------AHLSD 571 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~--------~kl~D 571 (599)
++||||+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+||+++.++. +||+|
T Consensus 88 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~D 164 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLE---ENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSD 164 (289)
T ss_dssp EEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHh---hCCeECCCcCcceEEEecCCcccccccceeeecc
Confidence 9999999999999999887666899999999999999999999 889999999999999998876 99999
Q ss_pred ccCCccCCcCCCceeeecccCCccccCC
Q 042902 572 FGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 572 FGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||+++..... ....||+.|+||
T Consensus 165 fg~~~~~~~~------~~~~~~~~y~aP 186 (289)
T 4fvq_A 165 PGISITVLPK------DILQERIPWVPP 186 (289)
T ss_dssp CCSCTTTSCH------HHHHHTTTTSCH
T ss_pred CcccccccCc------cccCCcCcccCH
Confidence 9999754321 234578899998
No 160
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.95 E-value=6.3e-29 Score=251.12 Aligned_cols=169 Identities=22% Similarity=0.424 Sum_probs=135.8
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe----
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF---- 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~---- 498 (599)
.++|+..+.||+|+||.||+|+. .+++.||||+++... ......|.+|++++++++||||+++++++...+.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 35788999999999999999996 478999999997543 2334678999999999999999999999876543
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.|+||||+++|+|.+++...+ .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 499999999999999997654 4889999999999999999999 889999999999999999999999999999866
Q ss_pred CcCCCc-eeeecccCCccccCC
Q 042902 579 LKEDQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~-~~~~~~~gt~~y~AP 599 (599)
...... .......||+.|+||
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aP 188 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSP 188 (311)
T ss_dssp ---------------CCTTCCH
T ss_pred cccccccccccccCcCcccCCH
Confidence 433222 222345789999998
No 161
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.95 E-value=1.8e-28 Score=261.43 Aligned_cols=168 Identities=24% Similarity=0.358 Sum_probs=130.4
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC-----Ce
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~ 498 (599)
.++|...+.||+|+||.||+|++. +|+.||||++.... ....+++.+|++++++++|||||++++++... +.
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 367999999999999999999866 68999999986532 33457899999999999999999999998543 56
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.|+||||+ +|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~-~l~~~~~~~~~~qi~~aL~~LH---~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV-YLTELHIKTLLYNLLVGVKYVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEecc-ccchhhhcccCC-CCCHHHHHHHHHHHHHHHHHHH---hCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence 89999998 579999887653 5899999999999999999999 889999999999999999999999999999876
Q ss_pred CcCCCc-------------------------eeeecccCCccccCC
Q 042902 579 LKEDQS-------------------------LTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~-------------------------~~~~~~~gt~~y~AP 599 (599)
...... ...+..+||++||||
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aP 252 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAP 252 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCH
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccCh
Confidence 422110 123456889999998
No 162
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.95 E-value=2.1e-28 Score=262.86 Aligned_cols=168 Identities=24% Similarity=0.423 Sum_probs=146.0
Q ss_pred hCCCCcCceecccccceEEEEEecC-CcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQD-GIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
..+|...+.||+|+||.||+|.+.. ++.||||.++... ...++|.+|+++|++++|||||+++++|...+..++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 4567888999999999999999874 8899999997543 3467899999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 506 MPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 506 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|++|+|.+++.... ..+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+..... ..
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-~~ 373 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGD-TY 373 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTC-CE
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCChhhEEECCCCcEEEeecccceeccCC-ce
Confidence 99999999998643 35889999999999999999999 889999999999999999999999999999866432 22
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......+|+.||||
T Consensus 374 ~~~~~~~~~~~y~aP 388 (495)
T 1opk_A 374 TAHAGAKFPIKWTAP 388 (495)
T ss_dssp ECCTTCCCCGGGCCH
T ss_pred eecCCCcCCcceeCH
Confidence 233445677899998
No 163
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.95 E-value=3.7e-28 Score=241.25 Aligned_cols=168 Identities=27% Similarity=0.476 Sum_probs=136.1
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 356888999999999999999874 79999999996442 23457899999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 166 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence 9999999999999877667899999999999999999999 8899999999999999999999999999998654322
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
. ......||+.|+||
T Consensus 167 ~--~~~~~~~~~~y~aP 181 (278)
T 3cok_A 167 E--KHYTLCGTPNYISP 181 (278)
T ss_dssp -----------------
T ss_pred C--cceeccCCCCcCCc
Confidence 1 22345789999998
No 164
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=99.95 E-value=1e-28 Score=251.19 Aligned_cols=168 Identities=24% Similarity=0.379 Sum_probs=139.7
Q ss_pred CCCCcCceecccccceEEEEEec-CCcE----EEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIE----VAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~----vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
++|...+.||+|+||.||+|++. +++. ||+|.+.... ....+.+.+|+.++++++||||+++++++. ++..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 46888899999999999999865 4443 7888775432 333456788999999999999999999986 456889
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 168 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD 168 (325)
T ss_dssp EEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHH---HTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC
T ss_pred EEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHH---hCCCCCCccchheEEECCCCeEEECCCCcccccCcc
Confidence 99999999999999876667888999999999999999999 889999999999999999999999999999977555
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
..........||+.|+||
T Consensus 169 ~~~~~~~~~~~~~~y~aP 186 (325)
T 3kex_A 169 DKQLLYSEAKTPIKWMAL 186 (325)
T ss_dssp TTCCC-----CCTTTSCH
T ss_pred cccccccCCCCcccccCh
Confidence 444444556788899998
No 165
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.95 E-value=3.2e-28 Score=244.67 Aligned_cols=169 Identities=23% Similarity=0.437 Sum_probs=143.2
Q ss_pred CCCCcCceecccccceEEEEEe-----cCCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC--Cee
Q 042902 428 NGFSENNLIGRGGVASVYKARI-----QDGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFK 499 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~ 499 (599)
..|+..+.||+|+||.||+|++ .+++.||||+++... ....+.+.+|++++++++||||+++++++... +..
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 3477889999999999999984 368999999997543 34567899999999999999999999999876 568
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
++||||+++|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+...
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~ 177 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLG---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIE 177 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhh---cCCcccCCCchheEEEcCCCCEEECccccccccc
Confidence 9999999999999999766666899999999999999999999 8899999999999999999999999999998765
Q ss_pred cCCCc-eeeecccCCccccCC
Q 042902 580 KEDQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~-~~~~~~~gt~~y~AP 599 (599)
..... .......||+.|+||
T Consensus 178 ~~~~~~~~~~~~~~~~~y~aP 198 (302)
T 4e5w_A 178 TDKEYYTVKDDRDSPVFWYAP 198 (302)
T ss_dssp TTCCEEECCCCTTCCGGGCCH
T ss_pred CCCcceeccCCCCCCccccCC
Confidence 43322 223456688889998
No 166
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.95 E-value=4.1e-28 Score=253.14 Aligned_cols=170 Identities=19% Similarity=0.274 Sum_probs=145.7
Q ss_pred hCCCCcCceeccc--ccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 427 TNGFSENNLIGRG--GVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G--~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
.++|+..+.||+| +||.||+|+.. +|+.||||+++... ....+.+.+|++++++++|||||++++++.+++..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3568889999999 99999999976 69999999997553 3345678899999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 502 VLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
|||||++|+|.+++.... ..+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||.+.....
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~ 180 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIH---HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMIS 180 (389)
T ss_dssp EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCGGGCEECEE
T ss_pred EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEcCCCCEEEcccccceeecc
Confidence 999999999999987652 35889999999999999999999 88999999999999999999999999999875533
Q ss_pred CCCc-----eeeecccCCccccCC
Q 042902 581 EDQS-----LTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~-----~~~~~~~gt~~y~AP 599 (599)
.... .......||+.|+||
T Consensus 181 ~~~~~~~~~~~~~~~~gt~~y~aP 204 (389)
T 3gni_B 181 HGQRQRVVHDFPKYSVKVLPWLSP 204 (389)
T ss_dssp TTEECSCBCCCCTTCTTTGGGSCH
T ss_pred ccccccccccccccccccccccCH
Confidence 2211 111234789999998
No 167
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.95 E-value=1.6e-28 Score=249.42 Aligned_cols=170 Identities=26% Similarity=0.476 Sum_probs=128.2
Q ss_pred hCCCCcCceecccccceEEEEEecC-C---cEEEEEEeccc--ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee-
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQD-G---IEVAVKVFDLQ--YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK- 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~-~---~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~- 499 (599)
.++|...+.||+|+||.||+|++.. + ..||||+++.. .....+++.+|++++++++||||+++++++...+..
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 101 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAKG 101 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC----
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccccc
Confidence 4579999999999999999998764 3 27999999754 344567899999999999999999999999877655
Q ss_pred -----eEEEEccCCCChhhhhhcCC-----CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEE
Q 042902 500 -----ALVLEYMPHGSLEKCLYSSN-----YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHL 569 (599)
Q Consensus 500 -----~lv~e~~~~g~L~~~l~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl 569 (599)
++||||+++|+|.+++.... ..+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||
T Consensus 102 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~ivH~Dikp~NIli~~~~~~kl 178 (323)
T 3qup_A 102 RLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCV 178 (323)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEE
T ss_pred CCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHH---cCCcccCCCCcceEEEcCCCCEEE
Confidence 99999999999999885422 24889999999999999999999 889999999999999999999999
Q ss_pred ccccCCccCCcCCCceeeecccCCccccCC
Q 042902 570 SDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 570 ~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+|||+|+...............+|+.|+||
T Consensus 179 ~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aP 208 (323)
T 3qup_A 179 ADFGLSRKIYSGDYYRQGCASKLPVKWLAL 208 (323)
T ss_dssp CCCCC-----------------CCGGGCCH
T ss_pred eeccccccccccccccccccccCcccccCc
Confidence 999999876544433334455678899998
No 168
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.5e-28 Score=250.22 Aligned_cols=167 Identities=23% Similarity=0.407 Sum_probs=139.2
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCC--CcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRH--RNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h--~niv~l~~~~~~~~~~~lv 502 (599)
.+.|+..+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++.+++| |||+++++++.+++..++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 34688899999999999999999889999999986543 3345789999999999986 9999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
||| .+|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+|||++ ++.+||+|||+|+.+....
T Consensus 88 ~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred EeC-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 995 5889999998754 4888999999999999999999 88999999999999997 5789999999998765443
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
.........||+.|+||
T Consensus 162 ~~~~~~~~~gt~~y~aP 178 (343)
T 3dbq_A 162 TSVVKDSQVGTVNYMPP 178 (343)
T ss_dssp --------CCCCSSCCH
T ss_pred ccccCCCCcCCcCcCCH
Confidence 33334456899999998
No 169
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.95 E-value=5.2e-28 Score=239.78 Aligned_cols=169 Identities=24% Similarity=0.354 Sum_probs=147.1
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 85 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence 356888999999999999999976 68999999996543 3445789999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++|+|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||.++.+......
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~ 161 (276)
T 2yex_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYLH---GIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (276)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred ecCCCcHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---hCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcch
Confidence 999999999987543 4889999999999999999999 889999999999999999999999999999865433322
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 162 ~~~~~~~~~~~y~aP 176 (276)
T 2yex_A 162 RLLNKMCGTLPYVAP 176 (276)
T ss_dssp CCBCCCCSCGGGCCG
T ss_pred hcccCCccccCccCh
Confidence 233456789999998
No 170
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.95 E-value=7e-29 Score=251.98 Aligned_cols=175 Identities=20% Similarity=0.356 Sum_probs=147.2
Q ss_pred HHHHHhCCCCcCceecccccceEEEEEec------CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEE
Q 042902 422 ELFQATNGFSENNLIGRGGVASVYKARIQ------DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCS 494 (599)
Q Consensus 422 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 494 (599)
++....++|+..+.||+|+||.||+|.+. +++.||||.+.... ......|.+|++++++++||||+++++++.
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~ 98 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVS 98 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEEC
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEc
Confidence 33445678999999999999999999864 37889999997543 234567999999999999999999999999
Q ss_pred cCCeeeEEEEccCCCChhhhhhcCC---------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC
Q 042902 495 NDDFKALVLEYMPHGSLEKCLYSSN---------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM 565 (599)
Q Consensus 495 ~~~~~~lv~e~~~~g~L~~~l~~~~---------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~ 565 (599)
+.+..++||||+++|+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++.++
T Consensus 99 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~NIli~~~~ 175 (322)
T 1p4o_A 99 QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDF 175 (322)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCSGGGEEECTTC
T ss_pred cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HCCCccCCCccceEEEcCCC
Confidence 9999999999999999999987532 24688899999999999999999 88999999999999999999
Q ss_pred cEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 566 VAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 566 ~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.+||+|||+++...............+|+.|+||
T Consensus 176 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 209 (322)
T 1p4o_A 176 TVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP 209 (322)
T ss_dssp CEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCH
T ss_pred eEEECcCccccccccccccccccCCCCCCCccCh
Confidence 9999999999866443322233345678899998
No 171
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.95 E-value=1.4e-28 Score=261.65 Aligned_cols=168 Identities=22% Similarity=0.390 Sum_probs=144.2
Q ss_pred HhCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
..++|...+.||+|+||.||+|.+.++..||||+++... ...++|.+|+++|++++|||||++++++. .+..++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 456788889999999999999999889999999997543 35688999999999999999999999986 5678999999
Q ss_pred cCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 506 MPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 506 ~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|++|+|.++++... ..+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+...... .
T Consensus 264 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~ 339 (454)
T 1qcf_A 264 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE---QRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-Y 339 (454)
T ss_dssp CTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-H
T ss_pred cCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-e
Confidence 99999999997543 25788889999999999999999 8899999999999999999999999999998654221 1
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......+|+.|+||
T Consensus 340 ~~~~~~~~~~~y~aP 354 (454)
T 1qcf_A 340 TAREGAKFPIKWTAP 354 (454)
T ss_dssp HTTCSSSSCGGGSCH
T ss_pred eccCCCcccccccCH
Confidence 122344578899998
No 172
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.8e-27 Score=237.48 Aligned_cols=207 Identities=24% Similarity=0.225 Sum_probs=184.0
Q ss_pred cccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCC
Q 042902 117 EISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSL 196 (599)
Q Consensus 117 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 196 (599)
.+.++++++++++++|.++.+++ .+. ++++.|+|++|.|++..+..|..+++|++|+|++|.++++.+. +.+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 36778899999999999986544 332 6899999999999988888999999999999999999876443 788999
Q ss_pred cEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccc
Q 042902 197 RNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNR 276 (599)
Q Consensus 197 ~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 276 (599)
++|++++|+|+.+|..+..+++|++|++++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999999999999988899999999999999998888899999999999999999998888889999999999999999
Q ss_pred ccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccC
Q 042902 277 LQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEI 329 (599)
Q Consensus 277 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 329 (599)
|++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.+++++|++.|..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 99887788899999999999999999 67888888889999999999998764
No 173
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.95 E-value=3.7e-28 Score=249.15 Aligned_cols=162 Identities=28% Similarity=0.379 Sum_probs=141.7
Q ss_pred CCCCcCceecccccceEEEEEe-cCCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
+.|...+.||+|+||.||+|+. .+|+.||||++.... ....+++.+|++++++++||||+++++++.+++..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 3478889999999999999986 478999999996542 233467899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||++ |++.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC--
Confidence 9997 6888888655556899999999999999999999 889999999999999999999999999999865322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
....||+.||||
T Consensus 208 ----~~~~gt~~y~aP 219 (348)
T 1u5q_A 208 ----NSFVGTPYWMAP 219 (348)
T ss_dssp ----CCCCSCGGGCCH
T ss_pred ----CcccCCcceeCH
Confidence 235799999998
No 174
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.95 E-value=4.1e-28 Score=246.91 Aligned_cols=169 Identities=25% Similarity=0.364 Sum_probs=146.4
Q ss_pred CCCCcCceecccccceEEEEEe-----cCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEE--cCCeee
Q 042902 428 NGFSENNLIGRGGVASVYKARI-----QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCS--NDDFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~ 500 (599)
++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. ..+..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 5688889999999999999984 368899999998766666678999999999999999999999887 445789
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+||||+++|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~ 179 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPL 179 (327)
T ss_dssp EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCGGGCEECCT
T ss_pred EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChhhEEECCCCCEEEcccccceeccc
Confidence 999999999999999875556899999999999999999999 88999999999999999999999999999987643
Q ss_pred CCCc-eeeecccCCccccCC
Q 042902 581 EDQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~-~~~~~~~gt~~y~AP 599 (599)
.... .......||+.|+||
T Consensus 180 ~~~~~~~~~~~~~~~~y~aP 199 (327)
T 3lxl_A 180 DKDYYVVREPGQSPIFWYAP 199 (327)
T ss_dssp TCSEEECSSCCCSCGGGSCH
T ss_pred CCccceeeccCCccccccCH
Confidence 3322 222345688899998
No 175
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.95 E-value=4e-28 Score=256.51 Aligned_cols=168 Identities=27% Similarity=0.358 Sum_probs=140.5
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc--ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcC-----Ce
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ--YEGAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~ 498 (599)
.++|...+.||+|+||.||+|+.. +|+.||||++... .....+++.+|++++++++||||+++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 467999999999999999999875 5889999999654 233457899999999999999999999998766 57
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.|+||||++ |+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~-~l~~~~~~~i~~qil~aL~~LH---~~givHrDlkp~NILl~~~~~~kL~DFGla~~~ 179 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI-FLTEEHIKTILYNLLLGENFIH---ESGIIHRDLKPANCLLNQDCSVKVCDFGLARTI 179 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEEecCC-cCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence 899999996 59999987653 4899999999999999999999 889999999999999999999999999999876
Q ss_pred CcCCCc--------------------eeeecccCCccccCC
Q 042902 579 LKEDQS--------------------LTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~--------------------~~~~~~~gt~~y~AP 599 (599)
...... ...+..+||++|+||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~AP 220 (432)
T 3n9x_A 180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAP 220 (432)
T ss_dssp -------------------------------CCCCCTTCCH
T ss_pred cccccccccccccccccccccccchhccccCCCCCccccCH
Confidence 433211 123567899999998
No 176
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.95 E-value=2.6e-28 Score=242.77 Aligned_cols=168 Identities=23% Similarity=0.366 Sum_probs=132.6
Q ss_pred hCCCCcCceecccccceEEEEEecC----CcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQD----GIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
.++|+..+.||+|+||.||+|.+.. +..||+|..+... ....+.|.+|+.++++++||||+++++++. ++..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEE
Confidence 3568888999999999999998742 5679999986543 334567999999999999999999999984 567899
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 93 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 169 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 169 (281)
T ss_dssp EEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECC----------
T ss_pred EEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecccccHHHEEECCCCCEEECccccccccCcc
Confidence 99999999999999877667899999999999999999999 889999999999999999999999999999866433
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
.. .......+|+.|+||
T Consensus 170 ~~-~~~~~~~~~~~y~aP 186 (281)
T 1mp8_A 170 TY-YKASKGKLPIKWMAP 186 (281)
T ss_dssp ----------CCGGGCCH
T ss_pred cc-cccccCCCcccccCh
Confidence 21 222345678899998
No 177
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.95 E-value=6e-28 Score=242.53 Aligned_cols=167 Identities=29% Similarity=0.426 Sum_probs=137.3
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhc--CCCCcceeEEEEEEcC----Ceee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKR--IRHRNLIKIISSCSND----DFKA 500 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~----~~~~ 500 (599)
.++|+..+.||+|+||.||+|++ +|+.||||++... ....+..|.+++.. ++||||+++++++... ...+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 45788999999999999999988 5899999998644 23456667766665 7999999999986543 4689
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEEccCCCCCeeecCCCcEEEccccCC
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGY-----SVPIIHCDLKPNNVLLDDNMVAHLSDFGMA 575 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~-----~~~iiH~dlk~~Nill~~~~~~kl~DFGla 575 (599)
+||||+++|+|.++++.. .+++..+..++.||++||+|||... +.+|+||||||+|||++.++.+||+|||+|
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999654 4899999999999999999999432 578999999999999999999999999999
Q ss_pred ccCCcCCCce--eeecccCCccccCC
Q 042902 576 KPLLKEDQSL--TQTQTLATIGYMAP 599 (599)
Q Consensus 576 ~~~~~~~~~~--~~~~~~gt~~y~AP 599 (599)
+......... ......||+.|+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aP 186 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAP 186 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCH
T ss_pred eecccccccccccccccccccceeCh
Confidence 8654332221 12345799999998
No 178
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.95 E-value=2.8e-29 Score=256.64 Aligned_cols=161 Identities=20% Similarity=0.217 Sum_probs=132.7
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--------cccHHHHHHHHHHHhcCC---------CCcceeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--------EGAFKSFDIECDMMKRIR---------HRNLIKI 489 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~---------h~niv~l 489 (599)
.++|...+.||+|+||.||+|+. +|+.||||+++... ....+.+.+|+++++.++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 35678889999999999999998 68999999997542 223478899999998885 7777777
Q ss_pred EEEEE------------------------------cCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHH
Q 042902 490 ISSCS------------------------------NDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALE 539 (599)
Q Consensus 490 ~~~~~------------------------------~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~ 539 (599)
.+.+. +.+..|+||||+++|++.+.+.. ..+++..+..|+.||+.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 76542 26789999999999977666644 34789999999999999999
Q ss_pred HHhcCCCCCeEEccCCCCCeeecCCC--------------------cEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 540 YLHFGYSVPIIHCDLKPNNVLLDDNM--------------------VAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 540 ~lH~~~~~~iiH~dlk~~Nill~~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|||+ +.+|+||||||+|||++.++ .+||+|||+|+.... ...+||+.||||
T Consensus 176 ~lH~--~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-------~~~~gt~~y~aP 246 (336)
T 2vuw_A 176 VAEA--SLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-------GIVVFCDVSMDE 246 (336)
T ss_dssp HHHH--HHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-------TEEECCCCTTCS
T ss_pred HHHH--hCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-------CcEEEeecccCh
Confidence 9992 25899999999999999887 899999999986532 134799999999
No 179
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.95 E-value=2.6e-28 Score=240.78 Aligned_cols=167 Identities=26% Similarity=0.391 Sum_probs=146.6
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEccC
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYMP 507 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 507 (599)
++|+..+.||+|+||.||+|.+.+++.||+|++..... ..+++.+|++++++++||||+++++++.+.+..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence 56888899999999999999998899999999975533 34789999999999999999999999999999999999999
Q ss_pred CCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCceee
Q 042902 508 HGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQ 587 (599)
Q Consensus 508 ~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~ 587 (599)
+|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++...... ....
T Consensus 87 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~ 162 (267)
T 3t9t_A 87 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSS 162 (267)
T ss_dssp TCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHST
T ss_pred CCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEECCCCCEEEccccccccccccc-cccc
Confidence 99999999877667899999999999999999999 8899999999999999999999999999998653221 1122
Q ss_pred ecccCCccccCC
Q 042902 588 TQTLATIGYMAP 599 (599)
Q Consensus 588 ~~~~gt~~y~AP 599 (599)
....+|+.|+||
T Consensus 163 ~~~~~~~~y~aP 174 (267)
T 3t9t_A 163 TGTKFPVKWASP 174 (267)
T ss_dssp TSTTCCGGGCCH
T ss_pred ccccccccccCh
Confidence 345678889998
No 180
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.95 E-value=3.3e-28 Score=243.12 Aligned_cols=167 Identities=27% Similarity=0.435 Sum_probs=132.0
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|++. ..||||+++... ....+.|.+|++++++++||||+++++++ ..+..++|||
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e 99 (289)
T 3og7_A 23 DGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQ 99 (289)
T ss_dssp TTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEE
T ss_pred ccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEE
Confidence 467899999999999999999865 469999997543 33457899999999999999999999965 4556899999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++++|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+........
T Consensus 100 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 176 (289)
T 3og7_A 100 WCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGS 176 (289)
T ss_dssp CCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEETTTEEEECCCC-----------
T ss_pred ecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCcccccCccceEEECCCCCEEEccceecccccccccc
Confidence 99999999999877777999999999999999999999 889999999999999999999999999999865433333
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 177 ~~~~~~~gt~~y~aP 191 (289)
T 3og7_A 177 HQFEQLSGSILWMAP 191 (289)
T ss_dssp -------CCCTTCCH
T ss_pred ccccccCCCccccCc
Confidence 333456799999998
No 181
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.95 E-value=4.9e-28 Score=252.23 Aligned_cols=166 Identities=23% Similarity=0.404 Sum_probs=140.0
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCC--CCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIR--HRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~ 503 (599)
..|...+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++++++ ||||+++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 3488899999999999999998889999999986543 334578999999999996 599999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
| +.+|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+|||++ ++.+||+|||+|+.+.....
T Consensus 136 E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~ 209 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTT 209 (390)
T ss_dssp E-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC-----
T ss_pred e-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCc
Confidence 9 56889999998765 5788889999999999999999 89999999999999995 57999999999987654333
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.......+||+.||||
T Consensus 210 ~~~~~~~~gt~~y~aP 225 (390)
T 2zmd_A 210 SVVKDSQVGAVNYMPP 225 (390)
T ss_dssp ----CCSCCCGGGCCH
T ss_pred cccCCCCCcCCCccCh
Confidence 3333456799999998
No 182
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.1e-28 Score=248.49 Aligned_cols=167 Identities=28% Similarity=0.367 Sum_probs=144.3
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc--------ccHHHHHHHHHHHhcCCCCcceeEEEEEEcC
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE--------GAFKSFDIECDMMKRIRHRNLIKIISSCSND 496 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 496 (599)
..++|...+.||+|+||.||+|+.. +++.||||+++.... ...+.+..|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 3567999999999999999999865 689999999965421 1334678899999999999999999999999
Q ss_pred CeeeEEEEccCCC-ChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCC
Q 042902 497 DFKALVLEYMPHG-SLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMA 575 (599)
Q Consensus 497 ~~~~lv~e~~~~g-~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla 575 (599)
+..++||||+.+| +|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a 177 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYLR---LKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEEeccCHHHEEEcCCCcEEEeecccc
Confidence 9999999999777 9999887654 4899999999999999999999 889999999999999999999999999999
Q ss_pred ccCCcCCCceeeecccCCccccCC
Q 042902 576 KPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 576 ~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+....... .....||+.|+||
T Consensus 178 ~~~~~~~~---~~~~~gt~~y~aP 198 (335)
T 3dls_A 178 AYLERGKL---FYTFCGTIEYCAP 198 (335)
T ss_dssp EECCTTCC---BCEECSCGGGCCH
T ss_pred eECCCCCc---eeccCCCccccCh
Confidence 87643322 2345799999998
No 183
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=99.95 E-value=6.8e-28 Score=251.34 Aligned_cols=168 Identities=24% Similarity=0.384 Sum_probs=132.7
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc--ccccHHHHHHHHHHHhcCC-CCcceeEEEEEEcCC--ee
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ--YEGAFKSFDIECDMMKRIR-HRNLIKIISSCSNDD--FK 499 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~--~~ 499 (599)
..++|+..+.||+|+||.||+|.+. +|+.||||++... .....+.+.+|+.++.++. ||||+++++++...+ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4578999999999999999999865 6899999998543 2344567889999999997 999999999997654 68
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
|+|||||+ |+|.+++... .+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+.+.
T Consensus 87 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 160 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYLH---SGGLLHRDMKPSNILLNAECHVKVADFGLSRSFV 160 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred EEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH---hCCEEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence 99999997 5999988764 4888899999999999999999 8899999999999999999999999999998653
Q ss_pred cCC-------------------CceeeecccCCccccCC
Q 042902 580 KED-------------------QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~-------------------~~~~~~~~~gt~~y~AP 599 (599)
... .....+..+||++||||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP 199 (388)
T 3oz6_A 161 NIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAP 199 (388)
T ss_dssp SCCCCCCCGGGCCC---------------CCCGGGGCCH
T ss_pred ccccccccccccccccccccccccccccCCcccCCcCCH
Confidence 211 11123456899999998
No 184
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.95 E-value=1e-27 Score=242.75 Aligned_cols=168 Identities=26% Similarity=0.361 Sum_probs=138.6
Q ss_pred CCCCcC-ceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEEEE
Q 042902 428 NGFSEN-NLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 428 ~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 504 (599)
+.|... +.||+|+||.||+|... +++.||||++........+.+.+|++++.++ +||||+++++++.+.+..++|||
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e 91 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE 91 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence 457663 78999999999999865 6999999999766656678899999999985 79999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc---EEEccccCCccCCcC
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV---AHLSDFGMAKPLLKE 581 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~---~kl~DFGla~~~~~~ 581 (599)
|+++|+|.+++.... .+++..+..++.||++||+||| +.+|+||||||+||+++.++. +||+|||+++.....
T Consensus 92 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~ 167 (316)
T 2ac3_A 92 KMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLN 167 (316)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-----
T ss_pred cCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---hCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccC
Confidence 999999999997653 4788999999999999999999 889999999999999998775 999999999865422
Q ss_pred CC-----ceeeecccCCccccCC
Q 042902 582 DQ-----SLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~-----~~~~~~~~gt~~y~AP 599 (599)
.. ........||+.|+||
T Consensus 168 ~~~~~~~~~~~~~~~gt~~y~aP 190 (316)
T 2ac3_A 168 GDCSPISTPELLTPCGSAEYMAP 190 (316)
T ss_dssp --------------CCSGGGCCH
T ss_pred CccccccccccccccCCcCccCh
Confidence 11 1112345699999998
No 185
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.95 E-value=1.3e-27 Score=242.86 Aligned_cols=158 Identities=25% Similarity=0.346 Sum_probs=125.6
Q ss_pred CceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC-CCcceeEEEEEEcCCeeeEEEEccCCCC
Q 042902 433 NNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALVLEYMPHGS 510 (599)
Q Consensus 433 ~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 510 (599)
.+.||+|+||.||+|... +|+.||||++... ....+..|+.+++.+. ||||+++++++.+++..++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999976 6899999999643 3467788999999997 9999999999999999999999999999
Q ss_pred hhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC---cEEEccccCCccCCcCCCceee
Q 042902 511 LEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM---VAHLSDFGMAKPLLKEDQSLTQ 587 (599)
Q Consensus 511 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~---~~kl~DFGla~~~~~~~~~~~~ 587 (599)
|.+++.... .+++..+..++.||++||+||| +.+|+||||||+||+++.++ .+||+|||+|+....... ..
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~~ 166 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--PL 166 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--cc
Confidence 999998754 5899999999999999999999 88999999999999998665 899999999986543322 23
Q ss_pred ecccCCccccCC
Q 042902 588 TQTLATIGYMAP 599 (599)
Q Consensus 588 ~~~~gt~~y~AP 599 (599)
....||+.|+||
T Consensus 167 ~~~~~t~~y~aP 178 (325)
T 3kn6_A 167 KTPCFTLHYAAP 178 (325)
T ss_dssp ------------
T ss_pred cccCCCcCccCH
Confidence 456789999999
No 186
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=5.9e-27 Score=231.55 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=162.4
Q ss_pred CCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeec
Q 042902 122 TNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYL 201 (599)
Q Consensus 122 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 201 (599)
.+.+++++++|.++. +|..+. ++|++|+|++|++++..+..|..+++|++|+|++|+++.+.+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 346777888887774 343332 56788888888887766667778888888888888887777777777888888888
Q ss_pred CCCCCCCCCc-cccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccccccc
Q 042902 202 GSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGS 280 (599)
Q Consensus 202 ~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 280 (599)
++|.++.+|. .+..+++|++|++++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|++++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 8888887765 456778888888888888877777788888888888888888877777788888888888888888877
Q ss_pred CcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCC
Q 042902 281 IPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 281 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 330 (599)
.+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|..+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 77778888888888888888887777778888888888888888887765
No 187
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.95 E-value=4.8e-28 Score=248.32 Aligned_cols=175 Identities=26% Similarity=0.384 Sum_probs=141.9
Q ss_pred HHHHHhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc-----ccccHHHHHHHHHHHhcCCCCcceeEEEEEEc
Q 042902 422 ELFQATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ-----YEGAFKSFDIECDMMKRIRHRNLIKIISSCSN 495 (599)
Q Consensus 422 ~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~ 495 (599)
++....++|...+.||+|+||.||+|... +++.||+|++... .....+.+.+|++++++++||||+++++++.+
T Consensus 20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~ 99 (345)
T 3hko_A 20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED 99 (345)
T ss_dssp CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence 34456678999999999999999999875 6889999998643 23456789999999999999999999999999
Q ss_pred CCeeeEEEEccCCCChhhhhhcC---------------------------------------CCcCCHHHHHHHHHHHHH
Q 042902 496 DDFKALVLEYMPHGSLEKCLYSS---------------------------------------NYILDIFQRLNIMIDVAS 536 (599)
Q Consensus 496 ~~~~~lv~e~~~~g~L~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~ 536 (599)
.+..++||||+++|+|.+++... ...+++..+..++.||++
T Consensus 100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~ 179 (345)
T 3hko_A 100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS 179 (345)
T ss_dssp SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999988521 112356667889999999
Q ss_pred HHHHHhcCCCCCeEEccCCCCCeeecCCC--cEEEccccCCccCCcCCC--ceeeecccCCccccCC
Q 042902 537 ALEYLHFGYSVPIIHCDLKPNNVLLDDNM--VAHLSDFGMAKPLLKEDQ--SLTQTQTLATIGYMAP 599 (599)
Q Consensus 537 ~l~~lH~~~~~~iiH~dlk~~Nill~~~~--~~kl~DFGla~~~~~~~~--~~~~~~~~gt~~y~AP 599 (599)
||+||| +.+|+||||||+||+++.++ .+||+|||+|+.+..... ........||+.|+||
T Consensus 180 ~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aP 243 (345)
T 3hko_A 180 ALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAP 243 (345)
T ss_dssp HHHHHH---HTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCH
T ss_pred HHHHHH---HCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCc
Confidence 999999 88999999999999998776 899999999986543221 1223456799999998
No 188
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.95 E-value=7.2e-28 Score=243.26 Aligned_cols=166 Identities=27% Similarity=0.348 Sum_probs=138.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc--ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE--GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
++|+..+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 57888999999999999999976 589999999865432 235678899999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.......
T Consensus 83 ~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~lH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 157 (311)
T 4agu_A 83 YCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFCH---KHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD- 157 (311)
T ss_dssp CCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred eCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc-
Confidence 999999998876543 4889999999999999999999 88999999999999999999999999999986643222
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 158 -~~~~~~~~~~y~aP 171 (311)
T 4agu_A 158 -YYDDEVATRWYRSP 171 (311)
T ss_dssp ---------GGGCCH
T ss_pred -ccCCCcCCccccCh
Confidence 22445789999998
No 189
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.95 E-value=4.2e-28 Score=248.98 Aligned_cols=164 Identities=26% Similarity=0.388 Sum_probs=128.4
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.+.|...+.||+|+||.||+|+.. +++.||||+++... ..+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence 457888999999999999999986 58899999997543 346788999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC---CCcEEEccccCCccCCcCC
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD---NMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~---~~~~kl~DFGla~~~~~~~ 582 (599)
+++|+|.+++...+ .+++..+..++.||++||.||| +.+|+||||||+||+++. ++.+||+|||+|+......
T Consensus 130 ~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~ 205 (349)
T 2w4o_A 130 VTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV 205 (349)
T ss_dssp CCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEESSSSTTCCEEECCCC---------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc
Confidence 99999999987654 4889999999999999999999 889999999999999975 8899999999998653221
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 206 ---~~~~~~gt~~y~aP 219 (349)
T 2w4o_A 206 ---LMKTVCGTPGYCAP 219 (349)
T ss_dssp ----------CGGGSCH
T ss_pred ---ccccccCCCCccCH
Confidence 22346799999998
No 190
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.95 E-value=7e-28 Score=255.94 Aligned_cols=162 Identities=30% Similarity=0.437 Sum_probs=139.6
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC-eeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD-FKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e~ 505 (599)
.++|...+.||+|+||.||+|.+. |+.||||+++... ..++|.+|+++|++++|||||++++++...+ ..++||||
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~ 268 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 268 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEEC
T ss_pred hHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEe
Confidence 456888899999999999999986 8899999997543 4578999999999999999999999987665 78999999
Q ss_pred cCCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 506 MPHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|++|+|.+++...+. .+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus 269 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~--- 342 (450)
T 1k9a_A 269 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 342 (450)
T ss_dssp CTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc---
Confidence 999999999986543 4688899999999999999999 889999999999999999999999999999854221
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.....+|+.||||
T Consensus 343 --~~~~~~~~~y~aP 355 (450)
T 1k9a_A 343 --QDTGKLPVKWTAP 355 (450)
T ss_dssp ------CCCTTTSCH
T ss_pred --ccCCCCCcceeCH
Confidence 1223678899998
No 191
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.95 E-value=2.6e-28 Score=246.97 Aligned_cols=179 Identities=23% Similarity=0.392 Sum_probs=149.9
Q ss_pred ccHHHHHHHhCCCCcCceecccccceEEEEEe------cCCcEEEEEEecccc-cccHHHHHHHHHHHhcC-CCCcceeE
Q 042902 418 FTHLELFQATNGFSENNLIGRGGVASVYKARI------QDGIEVAVKVFDLQY-EGAFKSFDIECDMMKRI-RHRNLIKI 489 (599)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l 489 (599)
+...++....++|...+.||+|+||.||+|++ .+++.||||+++... ....+.+.+|++++.++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34444445567899999999999999999984 256899999997553 33456799999999999 69999999
Q ss_pred EEEEEcCC-eeeEEEEccCCCChhhhhhcCCCc---------------CCHHHHHHHHHHHHHHHHHHhcCCCCCeEEcc
Q 042902 490 ISSCSNDD-FKALVLEYMPHGSLEKCLYSSNYI---------------LDIFQRLNIMIDVASALEYLHFGYSVPIIHCD 553 (599)
Q Consensus 490 ~~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~~---------------~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~d 553 (599)
++++...+ ..++||||+++|+|.+++...... +++..+..++.|+++||.||| +.+|+|||
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH---~~~i~H~d 173 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRD 173 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHH---HTTCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHH---hCCccccc
Confidence 99987654 589999999999999999865432 788899999999999999999 88999999
Q ss_pred CCCCCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 554 LKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 554 lk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|||+||+++.++.+||+|||+|+.+.............||+.|+||
T Consensus 174 ikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP 219 (316)
T 2xir_A 174 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 219 (316)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCH
T ss_pred CccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCc
Confidence 9999999999999999999999876544443444556789999998
No 192
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.95 E-value=6e-28 Score=252.34 Aligned_cols=166 Identities=27% Similarity=0.439 Sum_probs=143.2
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC--eeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--FKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~lv~ 503 (599)
++|...+.||+|+||.||+|++. +|+.||||+++... ....+.+.+|++++++++||||+++++++...+ ..++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 46888899999999999999976 58999999997543 344677889999999999999999999998765 779999
Q ss_pred EccCCCChhhhhhcCCC--cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee----cCCCcEEEccccCCcc
Q 042902 504 EYMPHGSLEKCLYSSNY--ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL----DDNMVAHLSDFGMAKP 577 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill----~~~~~~kl~DFGla~~ 577 (599)
||+++|+|.+++..... .+++..+..++.||++||+||| +.+|+||||||+||++ +.++.+||+|||+|+.
T Consensus 89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~ 165 (396)
T 4eut_A 89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLR---ENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARE 165 (396)
T ss_dssp CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEE
T ss_pred ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEEECCcCHHHEEEeecCCCceeEEEecCCCceE
Confidence 99999999999976433 3899999999999999999999 8899999999999999 7788899999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... ......||+.|+||
T Consensus 166 ~~~~~---~~~~~~gt~~y~aP 184 (396)
T 4eut_A 166 LEDDE---QFVSLYGTEEYLHP 184 (396)
T ss_dssp CCCGG---GSSCSSSCCTTCCH
T ss_pred ccCCC---ccccccCCccccCH
Confidence 64332 22346799999998
No 193
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=1.7e-28 Score=252.55 Aligned_cols=167 Identities=26% Similarity=0.358 Sum_probs=144.2
Q ss_pred CCCCcCceecccccceEEEEEe----cCCcEEEEEEecccc----cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCe
Q 042902 428 NGFSENNLIGRGGVASVYKARI----QDGIEVAVKVFDLQY----EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDF 498 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~ 498 (599)
++|...+.||+|+||.||+|+. .+|+.||||+++... ....+.+..|+++++++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5688899999999999999987 368999999986432 23345678899999999 69999999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.++||||+++|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+|||++.++.+||+|||+|+.+
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~ 209 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEF 209 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEESCSSEEEEC
T ss_pred EEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEECCCCcEEEeeCCCCeec
Confidence 999999999999999997654 4888999999999999999999 889999999999999999999999999999866
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... .......||+.||||
T Consensus 210 ~~~~~-~~~~~~~gt~~y~aP 229 (355)
T 1vzo_A 210 VADET-ERAYDFCGTIEYMAP 229 (355)
T ss_dssp CGGGG-GGGCGGGSCCTTCCH
T ss_pred ccCCC-CcccCcccCcCccCh
Confidence 43322 223456799999998
No 194
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.95 E-value=1.7e-27 Score=237.65 Aligned_cols=163 Identities=29% Similarity=0.492 Sum_probs=140.6
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccc-------cHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEG-------AFKSFDIECDMMKRIRHRNLIKIISSCSNDDF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-------~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 498 (599)
.++|+..+.||+|+||.||+|++. +++.||||++...... ..+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 357888999999999999999975 7899999998644221 1267999999999999999999999986654
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEccCCCCCeeecCCCc-----EEEcc
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVP--IIHCDLKPNNVLLDDNMV-----AHLSD 571 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~--iiH~dlk~~Nill~~~~~-----~kl~D 571 (599)
++||||+++|+|.+.+......+++..+..++.|+++||+||| +.+ |+||||||+||+++.++. +||+|
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH---~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ---NQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHH---hCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 7999999999999999877777999999999999999999999 778 999999999999987776 99999
Q ss_pred ccCCccCCcCCCceeeecccCCccccCC
Q 042902 572 FGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 572 FGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||+|+.... ......||+.|+||
T Consensus 173 fg~~~~~~~-----~~~~~~g~~~y~aP 195 (287)
T 4f0f_A 173 FGLSQQSVH-----SVSGLLGNFQWMAP 195 (287)
T ss_dssp CTTCBCCSS-----CEECCCCCCTTSCG
T ss_pred CCccccccc-----cccccCCCccccCc
Confidence 999985422 23446799999998
No 195
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.95 E-value=8.5e-28 Score=266.88 Aligned_cols=168 Identities=23% Similarity=0.272 Sum_probs=146.2
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeee
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~ 500 (599)
..++|...+.||+|+||.||+|+.. +++.||||+++.. .....+.+..|.+++..+ +||+|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 3567999999999999999999976 5889999999743 234557788999999987 6999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+||||+++|+|.+++...+ .+++..+..|+.||+.||+||| +.+|+||||||+|||++.++.+||+|||+|+....
T Consensus 419 lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~LH---~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 9999999999999998654 4889999999999999999999 88999999999999999999999999999986433
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
... .....+||+.||||
T Consensus 495 ~~~--~~~~~~GT~~Y~AP 511 (674)
T 3pfq_A 495 DGV--TTKTFCGTPDYIAP 511 (674)
T ss_dssp TTC--CBCCCCSCSSSCCH
T ss_pred CCc--ccccccCCCcccCH
Confidence 322 23457899999998
No 196
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.95 E-value=7.7e-28 Score=239.11 Aligned_cols=165 Identities=27% Similarity=0.435 Sum_probs=140.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|+..+.||+|+||.||+|... +++.||||++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 456888999999999999999876 57899999985432 23456789999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 88 ~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~- 162 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYCH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS- 162 (279)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTCEECCCCGGGEEECTTSCEEECSCCEESCC----
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEecccCChHhEEEcCCCCEEEEeccccccCCcc-
Confidence 99999999999987643 4788999999999999999999 899999999999999999999999999998754322
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 163 ---~~~~~~~~~~y~aP 176 (279)
T 3fdn_A 163 ---RRTDLCGTLDYLPP 176 (279)
T ss_dssp --------CCCCTTCCH
T ss_pred ---cccccCCCCCccCH
Confidence 22345789999998
No 197
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.95 E-value=3.3e-28 Score=258.64 Aligned_cols=168 Identities=24% Similarity=0.421 Sum_probs=138.6
Q ss_pred HhCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
..++|...+.||+|+||.||+|.+.++..||||+++... ...++|.+|+++|++++||||+++++++.+ +..++||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 345688889999999999999999888899999997543 345789999999999999999999999876 678999999
Q ss_pred cCCCChhhhhhcC-CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 506 MPHGSLEKCLYSS-NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 506 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|++|+|.+++... ...+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+...... .
T Consensus 260 ~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~-~ 335 (452)
T 1fmk_A 260 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-Y 335 (452)
T ss_dssp CTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------
T ss_pred hcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-e
Confidence 9999999999753 234889999999999999999999 8899999999999999999999999999998654322 2
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......+|+.||||
T Consensus 336 ~~~~~~~~~~~y~aP 350 (452)
T 1fmk_A 336 TARQGAKFPIKWTAP 350 (452)
T ss_dssp -------CCGGGSCH
T ss_pred ecccCCcccccccCH
Confidence 223345678899998
No 198
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.95 E-value=1.2e-27 Score=242.96 Aligned_cols=165 Identities=25% Similarity=0.384 Sum_probs=144.5
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc------ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE------GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
+.|...+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 46888999999999999999976 689999999865422 13678999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC----cEEEccccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM----VAHLSDFGMAK 576 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~----~~kl~DFGla~ 576 (599)
+||||+++|+|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++ .+||+|||+++
T Consensus 92 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~lH---~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~ 167 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYLH---TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH 167 (321)
T ss_dssp EEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCE
T ss_pred EEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCChHHEEEecCCCCcCCEEEccCccce
Confidence 9999999999999997644 4788999999999999999999 88999999999999999887 79999999998
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
...... ......||+.|+||
T Consensus 168 ~~~~~~---~~~~~~gt~~y~aP 187 (321)
T 2a2a_A 168 EIEDGV---EFKNIFGTPEFVAP 187 (321)
T ss_dssp ECCTTC---CCCCCCSCGGGCCH
T ss_pred ecCccc---cccccCCCCCccCc
Confidence 664332 22345799999998
No 199
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.95 E-value=6.8e-28 Score=240.35 Aligned_cols=166 Identities=26% Similarity=0.399 Sum_probs=139.7
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 101 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET 101 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence 46888899999999999999875 68999999986553 34567899999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcC---CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee---cCCCcEEEccccCCccCC
Q 042902 506 MPHGSLEKCLYSS---NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---DDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 506 ~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---~~~~~~kl~DFGla~~~~ 579 (599)
+++|+|.+++... ...+++..+..++.|+++||+||| +.+|+||||||+||++ +.++.+||+|||+|+.+.
T Consensus 102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~ 178 (285)
T 3is5_A 102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFK 178 (285)
T ss_dssp CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC--
T ss_pred CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecC
Confidence 9999999988542 245889999999999999999999 8899999999999999 456789999999998654
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
... ......||+.|+||
T Consensus 179 ~~~---~~~~~~~t~~y~aP 195 (285)
T 3is5_A 179 SDE---HSTNAAGTALYMAP 195 (285)
T ss_dssp -----------CTTGGGCCH
T ss_pred Ccc---cCcCcccccCcCCh
Confidence 322 23446799999998
No 200
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=5.1e-28 Score=248.26 Aligned_cols=169 Identities=31% Similarity=0.479 Sum_probs=139.6
Q ss_pred HHhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc-----ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE-----GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF 498 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-----~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~ 498 (599)
...++|...+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999975 589999999864321 123468899999999999999999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
.++||||+++ +|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLH---QHWILHRDLKPNNLLLDENGVLKLADFGLAKSF 162 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred eEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHH---HCCEECCCCCHHHEEEcCCCCEEEEecccceec
Confidence 9999999976 899888877667888889999999999999999 889999999999999999999999999999876
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... ......||+.|+||
T Consensus 163 ~~~~~--~~~~~~~t~~y~aP 181 (346)
T 1ua2_A 163 GSPNR--AYTHQVVTRWYRAP 181 (346)
T ss_dssp TSCCC--CCCCSCCCCTTCCH
T ss_pred cCCcc--cCCcccccccccCc
Confidence 43322 23456789999998
No 201
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.95 E-value=2.4e-28 Score=248.26 Aligned_cols=166 Identities=25% Similarity=0.412 Sum_probs=136.4
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccc-cHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEG-AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
++|...+.||+|+||.||+|+.. +++.||||++...... ....+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 46888999999999999999976 6899999998654322 222456799999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCce
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSL 585 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~ 585 (599)
++ |+|.+++......+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+|+...... .
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~ 155 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCH---RQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT--K 155 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc--c
Confidence 97 5999998877777899999999999999999999 8899999999999999999999999999998553222 2
Q ss_pred eeecccCCccccCC
Q 042902 586 TQTQTLATIGYMAP 599 (599)
Q Consensus 586 ~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 156 ~~~~~~~t~~y~aP 169 (324)
T 3mtl_A 156 TYDNEVVTLWYRPP 169 (324)
T ss_dssp -------CGGGCCH
T ss_pred ccccccCcccccCh
Confidence 23445789999998
No 202
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=243.57 Aligned_cols=169 Identities=27% Similarity=0.449 Sum_probs=145.3
Q ss_pred CCCCcCceecccccceEEEEEe-----cCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC--eee
Q 042902 428 NGFSENNLIGRGGVASVYKARI-----QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--FKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~--~~~ 500 (599)
++|...+.||+|+||.||+|++ .+|+.||||++........+.+.+|++++++++||||+++++++...+ ..+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 120 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 120 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence 4578889999999999999984 368999999998766666788999999999999999999999987654 789
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+||||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+....
T Consensus 121 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~ 197 (326)
T 2w1i_A 121 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ 197 (326)
T ss_dssp EEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCS
T ss_pred EEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCEeccCCCcceEEEcCCCcEEEecCcchhhccc
Confidence 999999999999999887667899999999999999999999 88999999999999999999999999999987654
Q ss_pred CCCce-eeecccCCccccCC
Q 042902 581 EDQSL-TQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~-~~~~~~gt~~y~AP 599 (599)
..... ......+|+.|+||
T Consensus 198 ~~~~~~~~~~~~~~~~y~aP 217 (326)
T 2w1i_A 198 DKEYYKVKEPGESPIFWYAP 217 (326)
T ss_dssp SCSEEECSSCCSCCGGGCCH
T ss_pred cccccccccCCCCceeEECc
Confidence 33221 12334577889998
No 203
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.95 E-value=3.3e-27 Score=233.64 Aligned_cols=222 Identities=27% Similarity=0.322 Sum_probs=117.8
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccce
Q 042902 22 LSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSME 101 (599)
Q Consensus 22 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~ 101 (599)
+..+++.++.+.+. ..+..+++|+.|++++|.++.++ .+..+++|++|+|++|.+++.
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-------~l~~l~~L~~L~l~~n~l~~~------------- 78 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-------GIQYLPNVRYLALGGNKLHDI------------- 78 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT-------TGGGCTTCCEEECTTSCCCCC-------------
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccccc-------ccccCCCCcEEECCCCCCCCc-------------
Confidence 34444555555443 22445555666666666555433 245555555555555555421
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCc
Q 042902 102 VFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNK 181 (599)
Q Consensus 102 ~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (599)
..+.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus 79 --------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 79 --------------SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp --------------GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------------hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc
Confidence 134455666666666666665555556666666666666666665555555556666666666666
Q ss_pred cCCCCCcccCCCCCCcEeecCCCCCCCCCcc-ccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCcc
Q 042902 182 LSGFVPACFGNLTSLRNLYLGSNQLTSIPST-LWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTT 260 (599)
Q Consensus 182 l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 260 (599)
+++..+..|..+++|++|++++|+++.+|.. +..+++|++|++++|++++..+..|..+++|+.|+|++|.+.+.
T Consensus 145 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---- 220 (272)
T 3rfs_A 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---- 220 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----
T ss_pred cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----
Confidence 6655555555555566666555555555432 34455555555555555544444445555555555555544422
Q ss_pred ccCcccccccccccccccccCccccc
Q 042902 261 IGDLKDLQYLFLEYNRLQGSIPDSIG 286 (599)
Q Consensus 261 ~~~l~~L~~L~L~~N~l~~~~~~~~~ 286 (599)
+++|+.|+++.|.++|.+|..++
T Consensus 221 ---~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 221 ---CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp ---TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ---CcHHHHHHHHHHhCCCcccCccc
Confidence 22344444444444444444333
No 204
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.95 E-value=1.4e-27 Score=236.77 Aligned_cols=164 Identities=24% Similarity=0.414 Sum_probs=125.3
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|+..+.||+|+||.||+|++. +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 57999999999999999999865 68999999996542 234567899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+ ++++.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||++++++.+||+|||+|+......
T Consensus 93 e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 166 (275)
T 2eue_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN- 166 (275)
T ss_dssp ECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCSSCC--------
T ss_pred hhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCCeeccCChHhEEECCCCCEEEeecccceeccCcc-
Confidence 999 678888776654 4889999999999999999999 8899999999999999999999999999998654322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 167 --~~~~~~~t~~y~aP 180 (275)
T 2eue_A 167 --FLKTSCGSPNYAAP 180 (275)
T ss_dssp ----------CTTCCH
T ss_pred --cccCCCCCcCcCCc
Confidence 22345689999998
No 205
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.95 E-value=5.3e-28 Score=249.94 Aligned_cols=170 Identities=20% Similarity=0.264 Sum_probs=138.3
Q ss_pred HhCCCCcCceecccccceEEEEEecC------CcEEEEEEecccccc-----------cHHHHHHHHHHHhcCCCCccee
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQD------GIEVAVKVFDLQYEG-----------AFKSFDIECDMMKRIRHRNLIK 488 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~ 488 (599)
..++|...+.||+|+||.||+|.+.. ++.||||++...... ....+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34578999999999999999998764 478999998654311 1123445666778889999999
Q ss_pred EEEEEEcC----CeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec--
Q 042902 489 IISSCSND----DFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD-- 562 (599)
Q Consensus 489 l~~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~-- 562 (599)
+++++... ...++||||+ +|+|.+++......+++..+..|+.||++||+||| +.+|+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~iiHrDlkp~Nill~~~ 188 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIH---EHEYVHGDIKASNLLLNYK 188 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEEESS
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeEEecCCHHHEEEecC
Confidence 99998764 4589999999 99999999887667999999999999999999999 88999999999999999
Q ss_pred CCCcEEEccccCCccCCcCCCce-----eeecccCCccccCC
Q 042902 563 DNMVAHLSDFGMAKPLLKEDQSL-----TQTQTLATIGYMAP 599 (599)
Q Consensus 563 ~~~~~kl~DFGla~~~~~~~~~~-----~~~~~~gt~~y~AP 599 (599)
.++.+||+|||+|+.+....... ......||+.||||
T Consensus 189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP 230 (364)
T 3op5_A 189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSI 230 (364)
T ss_dssp CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCH
T ss_pred CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCH
Confidence 88999999999998765332211 11345699999998
No 206
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.95 E-value=1.8e-27 Score=238.30 Aligned_cols=167 Identities=20% Similarity=0.342 Sum_probs=145.0
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|...+.||+|+||.||+|... +++.||+|++.... ....+.+..|+.+++.++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 356888899999999999999976 58899999986542 23456789999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 99999999999887543 4889999999999999999999 8899999999999999999999999999998654322
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
. ......||+.|+||
T Consensus 170 ~--~~~~~~~~~~y~aP 184 (294)
T 2rku_A 170 E--RKKVLCGTPNYIAP 184 (294)
T ss_dssp C--CBCCCCSCCSSCCH
T ss_pred c--ccccccCCCCcCCc
Confidence 2 22346789999998
No 207
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=4.4e-28 Score=250.80 Aligned_cols=168 Identities=27% Similarity=0.457 Sum_probs=131.5
Q ss_pred CCCcCceecccccceEEEEEec--CC--cEEEEEEeccc-ccccHHHHHHHHHHHhcCCCCcceeEEEEEEc-CCeeeEE
Q 042902 429 GFSENNLIGRGGVASVYKARIQ--DG--IEVAVKVFDLQ-YEGAFKSFDIECDMMKRIRHRNLIKIISSCSN-DDFKALV 502 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~--~~--~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~-~~~~~lv 502 (599)
.|...+.||+|+||.||+|++. ++ ..||||.++.. .....++|.+|+.++++++||||+++++++.. ++..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 3556689999999999999864 22 46899998654 33456789999999999999999999998764 4578999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+.+....
T Consensus 170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 246 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE 246 (373)
T ss_dssp EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHH---HCCEecCccchheEEECCCCCEEEeeccccccccccc
Confidence 9999999999999877767889999999999999999999 8899999999999999999999999999998664332
Q ss_pred Cc--eeeecccCCccccCC
Q 042902 583 QS--LTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~--~~~~~~~gt~~y~AP 599 (599)
.. .......+|+.||||
T Consensus 247 ~~~~~~~~~~~~~~~y~aP 265 (373)
T 3c1x_A 247 FDSVHNKTGAKLPVKWMAL 265 (373)
T ss_dssp -----------CCGGGSCH
T ss_pred cccccccCCCCCcccccCh
Confidence 11 122445678899998
No 208
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.95 E-value=5e-28 Score=240.39 Aligned_cols=167 Identities=23% Similarity=0.401 Sum_probs=143.2
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
.++|...+.||+|+||.||+|...+++.||||.+.... ...+.+.+|++++++++||||+++++++. .+..++||||+
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~ 89 (279)
T 1qpc_A 12 RETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYM 89 (279)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred HHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecC
Confidence 45788899999999999999999888899999996543 34578999999999999999999999986 45689999999
Q ss_pred CCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCce
Q 042902 507 PHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSL 585 (599)
Q Consensus 507 ~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~ 585 (599)
++|+|.+++..... .+++..+..++.|+++||+||| +.+|+||||||+||++++++.+||+|||+++...... ..
T Consensus 90 ~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~ 165 (279)
T 1qpc_A 90 ENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE-YT 165 (279)
T ss_dssp TTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-EE
T ss_pred CCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc-cc
Confidence 99999999875432 5889999999999999999999 8899999999999999999999999999998764332 22
Q ss_pred eeecccCCccccCC
Q 042902 586 TQTQTLATIGYMAP 599 (599)
Q Consensus 586 ~~~~~~gt~~y~AP 599 (599)
......+|+.|+||
T Consensus 166 ~~~~~~~~~~y~aP 179 (279)
T 1qpc_A 166 AREGAKFPIKWTAP 179 (279)
T ss_dssp CCTTCCCCTTTSCH
T ss_pred cccCCCCccCccCh
Confidence 22345678899998
No 209
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.95 E-value=5e-28 Score=246.91 Aligned_cols=171 Identities=24% Similarity=0.406 Sum_probs=145.7
Q ss_pred HhCCCCcCceecccccceEEEEEecC------CcEEEEEEecccc-cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCC
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQD------GIEVAVKVFDLQY-EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDD 497 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~ 497 (599)
..++|...+.||+|+||.||+|.... ++.||||.+.... ....+.+.+|+++++++ +||||+++++++.+.+
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 45678899999999999999998642 2479999997553 33457799999999999 8999999999999999
Q ss_pred eeeEEEEccCCCChhhhhhcC-------------CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC
Q 042902 498 FKALVLEYMPHGSLEKCLYSS-------------NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN 564 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~~-------------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~ 564 (599)
..++||||+++|+|.+++... ...+++..+..++.||++||.||| +.+|+||||||+||+++.+
T Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~ 200 (333)
T 2i1m_A 124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVLLTNG 200 (333)
T ss_dssp SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGCEEEGG
T ss_pred ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHh---cCCcccCCcccceEEECCC
Confidence 999999999999999998653 224788899999999999999999 8899999999999999999
Q ss_pred CcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 565 MVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 565 ~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.+||+|||+|+...............+|+.|+||
T Consensus 201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 235 (333)
T 2i1m_A 201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAP 235 (333)
T ss_dssp GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCH
T ss_pred CeEEECccccccccccccceeecCCCCCCccccCH
Confidence 99999999999876544433333455678899998
No 210
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.95 E-value=2e-27 Score=236.73 Aligned_cols=166 Identities=22% Similarity=0.460 Sum_probs=143.9
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|...+.||+|+||.||+|... +|+.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 467899999999999999999876 58999999996543 334567889999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc---EEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV---AHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~---~kl~DFGla~~~~~ 580 (599)
||+++|+|.+.+.... .+++..+..++.|++.||.||| +.+|+||||||+||+++.++. +||+|||++.....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 9999999988887653 4889999999999999999999 889999999999999986655 99999999986543
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
.. ......||+.|+||
T Consensus 161 ~~---~~~~~~~~~~y~aP 176 (284)
T 3kk8_A 161 SE---AWHGFAGTPGYLSP 176 (284)
T ss_dssp SC---BCCCSCSCGGGCCH
T ss_pred Cc---cccCCCCCcCCcCc
Confidence 22 22346799999998
No 211
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.95 E-value=9.5e-28 Score=240.81 Aligned_cols=169 Identities=27% Similarity=0.440 Sum_probs=140.6
Q ss_pred CCCCcCceecccccceEEEEEecC----CcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEE-cCCeeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQD----GIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCS-NDDFKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~-~~~~~~l 501 (599)
..|...+.||+|+||.||+|.+.+ +..||+|.+.... ....+.+.+|++++++++||||+++++++. .++..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 104 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence 457778999999999999998642 3368999987543 344578999999999999999999999865 4567899
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.+...
T Consensus 105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 181 (298)
T 3f66_A 105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 181 (298)
T ss_dssp EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCG
T ss_pred EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEECCCCCEEECccccccccccc
Confidence 99999999999999877667899999999999999999999 889999999999999999999999999999866433
Q ss_pred CC--ceeeecccCCccccCC
Q 042902 582 DQ--SLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~--~~~~~~~~gt~~y~AP 599 (599)
.. ........+|+.|+||
T Consensus 182 ~~~~~~~~~~~~~~~~y~aP 201 (298)
T 3f66_A 182 EYYSVHNKTGAKLPVKWMAL 201 (298)
T ss_dssp GGCBC-----CCBCGGGSCH
T ss_pred chhccccccCCCCCccccCh
Confidence 21 1223455678899998
No 212
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.95 E-value=9.9e-28 Score=252.35 Aligned_cols=166 Identities=26% Similarity=0.344 Sum_probs=133.5
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--------cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--------EGAFKSFDIECDMMKRIRHRNLIKIISSCSND 496 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~ 496 (599)
..++|...+.||+|+||.||+|... +++.||||++.... ......+.+|++++++++||||+++++++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~- 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence 4578999999999999999999875 58999999986532 1122358899999999999999999999854
Q ss_pred CeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC---CcEEEcccc
Q 042902 497 DFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN---MVAHLSDFG 573 (599)
Q Consensus 497 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~---~~~kl~DFG 573 (599)
+..++||||+++|+|.+++.... .+++..+..++.|+++||+||| +.+|+||||||+|||++.+ +.+||+|||
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG 287 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFG 287 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSSSCCEEECCSS
T ss_pred CceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCCCcceEEEeecc
Confidence 45799999999999999887654 4889999999999999999999 8899999999999999754 459999999
Q ss_pred CCccCCcCCCceeeecccCCccccCC
Q 042902 574 MAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 574 la~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+|+..... .......||+.||||
T Consensus 288 ~a~~~~~~---~~~~~~~gt~~y~aP 310 (419)
T 3i6u_A 288 HSKILGET---SLMRTLCGTPTYLAP 310 (419)
T ss_dssp TTTSCC--------------CTTCCT
T ss_pred cceecCCC---ccccccCCCCCccCc
Confidence 99865432 223456799999999
No 213
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.95 E-value=2.5e-27 Score=237.68 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=144.1
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ..+.+.+|+++++++ +|+|++++++++.+.+..++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 35688999999999999999996 479999999986442 234678899999999 79999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc-----EEEccccCCccCC
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV-----AHLSDFGMAKPLL 579 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~-----~kl~DFGla~~~~ 579 (599)
|+ +|+|.+++...+..+++..+..++.||++||+||| +.+|+||||||+||+++.++. +||+|||+|+...
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH---EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99 99999999876666899999999999999999999 899999999999999987775 9999999998765
Q ss_pred cCCCc-----eeeecccCCccccCC
Q 042902 580 KEDQS-----LTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~-----~~~~~~~gt~~y~AP 599 (599)
..... .......||+.|+||
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aP 187 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSI 187 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCH
T ss_pred cccccccccccCccCCCCCcccCCc
Confidence 43221 123456799999998
No 214
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=99.95 E-value=1.8e-27 Score=244.69 Aligned_cols=168 Identities=27% Similarity=0.416 Sum_probs=142.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEc--------C
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSN--------D 496 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--------~ 496 (599)
++|+..+.||+|+||.||+|+.. +|+.||||++.... ......+.+|++++++++||||+++++++.. .
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 57889999999999999999974 78999999986443 3335678899999999999999999999876 3
Q ss_pred CeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 497 DFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 497 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
+..++||||+++ ++.+.+......+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 97 ~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~ 172 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIH---RNKILHRDMKAANVLITRDGVLKLADFGLAR 172 (351)
T ss_dssp CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred ceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCeeCCCCCHHHEEEcCCCCEEEccchhcc
Confidence 468999999975 888888776667899999999999999999999 8899999999999999999999999999998
Q ss_pred cCCcCC--CceeeecccCCccccCC
Q 042902 577 PLLKED--QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~--~~~~~~~~~gt~~y~AP 599 (599)
.+.... .........||+.|+||
T Consensus 173 ~~~~~~~~~~~~~~~~~gt~~y~aP 197 (351)
T 3mi9_A 173 AFSLAKNSQPNRYTNRVVTLWYRPP 197 (351)
T ss_dssp ECCCCSSSSCCCCCSSCSCGGGCCH
T ss_pred cccccccccccccCCcccccCccCc
Confidence 664222 12223456789999998
No 215
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=2.8e-27 Score=241.68 Aligned_cols=165 Identities=28% Similarity=0.412 Sum_probs=136.5
Q ss_pred HhCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcC--CCCcceeEEEEEEcC----Cee
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRI--RHRNLIKIISSCSND----DFK 499 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l--~h~niv~l~~~~~~~----~~~ 499 (599)
..++|...+.||+|+||.||+|++. |+.||||++.... ...+..|.+++... +||||+++++++... +..
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 110 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL 110 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence 4467999999999999999999986 8999999985432 24455566665554 899999999999877 688
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCC--------CeEEccCCCCCeeecCCCcEEEcc
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSV--------PIIHCDLKPNNVLLDDNMVAHLSD 571 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~--------~iiH~dlk~~Nill~~~~~~kl~D 571 (599)
++||||+++|+|.++++... +++..+..++.|++.||.||| +. +|+||||||+||+++.++.+||+|
T Consensus 111 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~D 185 (337)
T 3mdy_A 111 YLITDYHENGSLYDYLKSTT--LDAKSMLKLAYSSVSGLCHLH---TEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD 185 (337)
T ss_dssp EEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH---SCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred EEEEeccCCCcHHHHhhccC--CCHHHHHHHHHHHHHHHHHHH---HhhhhhccCCCEEecccchHHEEECCCCCEEEEe
Confidence 99999999999999997653 889999999999999999999 66 999999999999999999999999
Q ss_pred ccCCccCCcCCCce--eeecccCCccccCC
Q 042902 572 FGMAKPLLKEDQSL--TQTQTLATIGYMAP 599 (599)
Q Consensus 572 FGla~~~~~~~~~~--~~~~~~gt~~y~AP 599 (599)
||+|+.+....... ......||+.|+||
T Consensus 186 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aP 215 (337)
T 3mdy_A 186 LGLAVKFISDTNEVDIPPNTRVGTKRYMPP 215 (337)
T ss_dssp CTTCEECC---------CCSSCSCGGGCCH
T ss_pred CCCceeeccccccccCCCCCCccCcceeCh
Confidence 99998664332211 12345799999998
No 216
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.6e-28 Score=245.33 Aligned_cols=169 Identities=24% Similarity=0.373 Sum_probs=135.6
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcE----EEEEEeccc-ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIE----VAVKVFDLQ-YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~----vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
.++|...+.||+|+||.||+|.+. +++. ||+|.+... .....+.+.+|++++++++||||+++++++...+ .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 357888999999999999999865 4544 577776543 3445678999999999999999999999998765 78
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+|+||+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+.+..
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 999999999999999887777899999999999999999999 88999999999999999999999999999987654
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
...........+|+.|+||
T Consensus 170 ~~~~~~~~~~~~t~~y~aP 188 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMAL 188 (327)
T ss_dssp ----------CCCGGGSCH
T ss_pred ccccccccCCCccccccCH
Confidence 4433344456678899998
No 217
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=236.33 Aligned_cols=167 Identities=26% Similarity=0.385 Sum_probs=140.9
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
+.|.....||+|+||.||+|... +++.||||.+........+.+.+|+.+++.++||||+++++++.+.+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 34556679999999999999964 68899999997766566688999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcCCC--cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC-CCcEEEccccCCccCCcCCC
Q 042902 507 PHGSLEKCLYSSNY--ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD-NMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 507 ~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~-~~~~kl~DFGla~~~~~~~~ 583 (599)
++|+|.+++..... ..++..+..++.|+++||.||| +.+|+||||||+||+++. ++.+||+|||+++......
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~- 177 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLH---DNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN- 177 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHH---hCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC-
Confidence 99999999976532 4568888899999999999999 889999999999999987 8999999999998654322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 178 -~~~~~~~~~~~y~aP 192 (295)
T 2clq_A 178 -PCTETFTGTLQYMAP 192 (295)
T ss_dssp ----CCCCCCGGGCCH
T ss_pred -CcccccCCCccccCh
Confidence 122345789999998
No 218
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.95 E-value=1.9e-27 Score=242.90 Aligned_cols=167 Identities=20% Similarity=0.342 Sum_probs=145.2
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
..+|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+..|+.++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 356888899999999999999976 58899999986542 23456789999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++++|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 99999999999887643 4889999999999999999999 8899999999999999999999999999998664332
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
. ......||+.|+||
T Consensus 196 ~--~~~~~~gt~~y~aP 210 (335)
T 2owb_A 196 E--RKKVLCGTPNYIAP 210 (335)
T ss_dssp C--CBCCCCSCCSSCCH
T ss_pred c--cccccCCCccccCH
Confidence 2 22446799999998
No 219
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.95 E-value=1.6e-27 Score=237.56 Aligned_cols=164 Identities=22% Similarity=0.357 Sum_probs=141.1
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|...+.||+|+||.||+|... +++.||||++.... .....++.+|+..+.++ +||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 456888999999999999999976 79999999987542 33456788999999999 899999999999999999999
Q ss_pred EEccCCCChhhhhhcCC---CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC---------------
Q 042902 503 LEYMPHGSLEKCLYSSN---YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN--------------- 564 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~---~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~--------------- 564 (599)
|||+++|+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++.+
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~ 166 (289)
T 1x8b_A 90 NEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIH---SMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDW 166 (289)
T ss_dssp EECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEC-----------------
T ss_pred EEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeecCCCHHHEEEcCCCCCcccccccccccc
Confidence 99999999999987532 34789999999999999999999 8899999999999999844
Q ss_pred ----CcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 565 ----MVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 565 ----~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..+||+|||.++...... ...||+.|+||
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aP 199 (289)
T 1x8b_A 167 ASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLAN 199 (289)
T ss_dssp ---CCCEEECCCTTCEETTCSC------CCCCCGGGCCH
T ss_pred cCCceEEEEcccccccccCCcc------ccCCCccccCh
Confidence 479999999998654321 23589999998
No 220
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=1.6e-26 Score=228.38 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=174.1
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhccccc
Q 042902 20 SKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQS 99 (599)
Q Consensus 20 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~ 99 (599)
.+.+.+++++++++.+ |..+. ++|++|+|++|+++.+++. .|.++++|++|+|++|.|+.+.+..|..++ .
T Consensus 16 ~~~~~l~~~~~~l~~i-p~~~~--~~l~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~-~ 86 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI-PSNIP--ADTKKLDLQSNKLSSLPSK-----AFHRLTKLRLLYLNDNKLQTLPAGIFKELK-N 86 (270)
T ss_dssp TTTTEEECTTSCCSSC-CSCCC--TTCSEEECCSSCCSCCCTT-----SSSSCTTCCEEECCSSCCSCCCTTTTSSCT-T
T ss_pred CCCCEEEccCCCCCcc-CCCCC--CCCCEEECcCCCCCeeCHH-----HhcCCCCCCEEECCCCccCeeChhhhcCCC-C
Confidence 3577888888888864 44443 5788888888888887764 578888888888888888877777777776 4
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
|+.|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++
T Consensus 87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence 88888888888888888889999999999999999988888899999999999999999987777789999999999999
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCcccc
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGP 232 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~ 232 (599)
|+++++.+..|..+++|++|+|++|+++.+|. .+..+++|+.|++++|.+...
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99998888889999999999999999999876 467789999999999998754
No 221
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=1.6e-27 Score=237.82 Aligned_cols=168 Identities=24% Similarity=0.393 Sum_probs=142.1
Q ss_pred CCCCcCc-eecccccceEEEEEec---CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 428 NGFSENN-LIGRGGVASVYKARIQ---DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 428 ~~~~~~~-~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
++|...+ .||+|+||.||+|.+. +++.||||+++... ....+++.+|++++++++||||+++++++ ..+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEE
Confidence 3455555 8999999999999854 57889999997643 34567899999999999999999999999 45668999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~ 164 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 164 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHH---HCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence 9999999999999876667899999999999999999999 8899999999999999999999999999998764333
Q ss_pred Cc-eeeecccCCccccCC
Q 042902 583 QS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~-~~~~~~~gt~~y~AP 599 (599)
.. .......+|+.|+||
T Consensus 165 ~~~~~~~~~~~~~~y~aP 182 (287)
T 1u59_A 165 SYYTARSAGKWPLKWYAP 182 (287)
T ss_dssp CEECCCCSSCCCGGGCCH
T ss_pred ceeeccccccccccccCH
Confidence 22 122344578999998
No 222
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.95 E-value=3.8e-28 Score=244.18 Aligned_cols=168 Identities=26% Similarity=0.388 Sum_probs=141.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.+.|+..+.||+|+||.||+|+.. +++.||+|++........+++..|++++++++||||+++++++...+..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 457888999999999999999986 5899999999776666678899999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCce
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSL 585 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~ 585 (599)
+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||++...... ..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~~ 172 (302)
T 2j7t_A 98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLH---SKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--LQ 172 (302)
T ss_dssp CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--HH
T ss_pred CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh---cCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc--cc
Confidence 9999999998765556899999999999999999999 889999999999999999999999999997643211 11
Q ss_pred eeecccCCccccCC
Q 042902 586 TQTQTLATIGYMAP 599 (599)
Q Consensus 586 ~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 173 ~~~~~~~~~~y~aP 186 (302)
T 2j7t_A 173 KRDSFIGTPYWMAP 186 (302)
T ss_dssp C-----CCGGGCCH
T ss_pred ccccccCChhhcCC
Confidence 12345689999998
No 223
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.95 E-value=1.2e-27 Score=244.20 Aligned_cols=169 Identities=27% Similarity=0.485 Sum_probs=137.3
Q ss_pred CCCCcCceecccccceEEEEEecC-----CcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQD-----GIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~-----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
..|+..+.||+|+||.||+|.+.. +..||||+++... ......+.+|++++++++||||+++++++...+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 456677899999999999998653 2469999997543 3345679999999999999999999999999999999
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++......+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~ 200 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 200 (333)
T ss_dssp EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence 99999999999999877667899999999999999999999 889999999999999999999999999999876433
Q ss_pred CCc-eeeecccCCccccCC
Q 042902 582 DQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~-~~~~~~~gt~~y~AP 599 (599)
... .......+|+.|+||
T Consensus 201 ~~~~~~~~~~~~~~~y~aP 219 (333)
T 1mqb_A 201 PEATYTTSGGKIPIRWTAP 219 (333)
T ss_dssp ----------CCCGGGSCH
T ss_pred cccccccCCCCccccccCc
Confidence 211 122334568899998
No 224
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.95 E-value=2.1e-27 Score=245.39 Aligned_cols=168 Identities=32% Similarity=0.495 Sum_probs=146.2
Q ss_pred HHhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc--------ccHHHHHHHHHHHhcC-CCCcceeEEEEEE
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE--------GAFKSFDIECDMMKRI-RHRNLIKIISSCS 494 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l-~h~niv~l~~~~~ 494 (599)
...++|...+.||+|+||.||+|++. +|+.||||+++.... ...+.+..|+++++++ +||||+++++++.
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 170 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE 170 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence 34567999999999999999999986 799999999865431 1245688999999999 7999999999999
Q ss_pred cCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccC
Q 042902 495 NDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGM 574 (599)
Q Consensus 495 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGl 574 (599)
..+..++||||+++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 171 ~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~ 246 (365)
T 2y7j_A 171 SSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFLH---ANNIVHRDLKPENILLDDNMQIRLSDFGF 246 (365)
T ss_dssp BSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred eCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEECCCCCEEEEecCc
Confidence 9999999999999999999987643 4889999999999999999999 88999999999999999999999999999
Q ss_pred CccCCcCCCceeeecccCCccccCC
Q 042902 575 AKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 575 a~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+..+.... ......||+.|+||
T Consensus 247 ~~~~~~~~---~~~~~~gt~~y~aP 268 (365)
T 2y7j_A 247 SCHLEPGE---KLRELCGTPGYLAP 268 (365)
T ss_dssp CEECCTTC---CBCCCCSCGGGCCH
T ss_pred ccccCCCc---ccccCCCCCCccCh
Confidence 98765332 22446799999998
No 225
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.95 E-value=1.9e-27 Score=243.16 Aligned_cols=163 Identities=26% Similarity=0.427 Sum_probs=138.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|... +|+.||||+++..... +..|++++.++ +||||+++++++.+++..|+|||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E 96 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTE 96 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEEC
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 457889999999999999999976 6899999999755332 34688888887 79999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC----CcEEEccccCCccCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN----MVAHLSDFGMAKPLLK 580 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~----~~~kl~DFGla~~~~~ 580 (599)
|+++|+|.+++...+ .+++..+..++.||+.||+||| +.+|+||||||+||++.++ +.+||+|||+|+....
T Consensus 97 ~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~lH---~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~ 172 (342)
T 2qr7_A 97 LMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA 172 (342)
T ss_dssp CCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBC
T ss_pred CCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcC
Confidence 999999999987654 4899999999999999999999 8899999999999998533 3599999999987643
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
... .....+||+.||||
T Consensus 173 ~~~--~~~~~~gt~~y~aP 189 (342)
T 2qr7_A 173 ENG--LLMTPCYTANFVAP 189 (342)
T ss_dssp TTC--CBCCSSCCSSCCCH
T ss_pred CCC--ceeccCCCccccCH
Confidence 322 22346789999998
No 226
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.95 E-value=1.3e-27 Score=240.03 Aligned_cols=169 Identities=26% Similarity=0.388 Sum_probs=138.8
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEc----------
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSN---------- 495 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~---------- 495 (599)
.++|+..+.||+|+||.||+|+.. +|+.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 456888999999999999999975 7999999999643 3345788999999999999999999998865
Q ss_pred ---CCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccc
Q 042902 496 ---DDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDF 572 (599)
Q Consensus 496 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DF 572 (599)
.+..++||||+++|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+||
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dlkp~Nil~~~~~~~kl~df 160 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDF 160 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCC
T ss_pred cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHH---hCCeecccCCHHhEEEcCCCCEEEeeC
Confidence 34679999999999999999876667888899999999999999999 889999999999999999999999999
Q ss_pred cCCccCCcCCC------------ceeeecccCCccccCC
Q 042902 573 GMAKPLLKEDQ------------SLTQTQTLATIGYMAP 599 (599)
Q Consensus 573 Gla~~~~~~~~------------~~~~~~~~gt~~y~AP 599 (599)
|+++....... ........||+.|+||
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aP 199 (303)
T 1zy4_A 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVAT 199 (303)
T ss_dssp CCCSCTTC-------------------------CTTSCH
T ss_pred cchhhcccccchhccccccccccccccccCCCcccccCc
Confidence 99986542210 1122345789999998
No 227
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.95 E-value=1.2e-27 Score=236.25 Aligned_cols=161 Identities=22% Similarity=0.431 Sum_probs=141.4
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC--CeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~lv~ 503 (599)
++|...+.||+|+||.||+|++. ++.||||+++... ....+.|.+|++++++++||||+++++++.+. +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 56888899999999999999985 8999999997553 33456799999999999999999999999877 6889999
Q ss_pred EccCCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVP--IIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~--iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
||+++|+|.+++..... .+++..+..++.|+++||.||| +.+ |+||||||+||+++.++.+||+|||++.....
T Consensus 89 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~ 165 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH---TLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQS 165 (271)
T ss_dssp ECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT---TSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC
T ss_pred cccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh---cCCCceecCCCccceEEEcCCcceeEEeccceeeecc
Confidence 99999999999987654 5899999999999999999999 777 99999999999999999999999998764321
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
....||+.|+||
T Consensus 166 -------~~~~~t~~y~aP 177 (271)
T 3kmu_A 166 -------PGRMYAPAWVAP 177 (271)
T ss_dssp -------TTCBSCGGGSCH
T ss_pred -------cCccCCccccCh
Confidence 234689999998
No 228
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.95 E-value=1.5e-27 Score=244.95 Aligned_cols=165 Identities=23% Similarity=0.354 Sum_probs=144.7
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccc-----------------cHHHHHHHHHHHhcCCCCcceeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEG-----------------AFKSFDIECDMMKRIRHRNLIKI 489 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~e~~~l~~l~h~niv~l 489 (599)
.++|...+.||+|+||.||+|.. +|+.||||++...... ..+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 35789999999999999999999 8999999998644211 11789999999999999999999
Q ss_pred EEEEEcCCeeeEEEEccCCCChhhh------hhcC-CCcCCHHHHHHHHHHHHHHHHHHhcCCC-CCeEEccCCCCCeee
Q 042902 490 ISSCSNDDFKALVLEYMPHGSLEKC------LYSS-NYILDIFQRLNIMIDVASALEYLHFGYS-VPIIHCDLKPNNVLL 561 (599)
Q Consensus 490 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~-~~iiH~dlk~~Nill 561 (599)
++++.+.+..++||||+++|+|.++ +... ...+++..+..++.|+++||.||| + .+|+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIH---NEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHH---HTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHh---ccCCEeecCCChHhEEE
Confidence 9999999999999999999999998 5542 346899999999999999999999 7 899999999999999
Q ss_pred cCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 562 DDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 562 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.++.+||+|||+++..... ......||+.|+||
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aP 219 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPP 219 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCG
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCc
Confidence 99999999999999865332 33456799999998
No 229
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.95 E-value=1.3e-27 Score=236.30 Aligned_cols=163 Identities=28% Similarity=0.465 Sum_probs=130.4
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccc----cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY----EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|+..+.||+|+||.||+|.+. |+.||||+++... ....+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 357888899999999999999975 8999999986542 23457899999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCC---eEEccCCCCCeeecC--------CCcEEEcc
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVP---IIHCDLKPNNVLLDD--------NMVAHLSD 571 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~---iiH~dlk~~Nill~~--------~~~~kl~D 571 (599)
|||+++|+|.+++... .+++..+..++.|+++||.||| +.+ |+||||||+||+++. ++.+||+|
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~lH---~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D 159 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYLH---DEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD 159 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHHH---HSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHH---hCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence 9999999999998654 4889999999999999999999 666 999999999999986 67899999
Q ss_pred ccCCccCCcCCCceeeecccCCccccCC
Q 042902 572 FGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 572 FGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||+|+...... .....||+.|+||
T Consensus 160 fg~~~~~~~~~----~~~~~~~~~y~aP 183 (271)
T 3dtc_A 160 FGLAREWHRTT----KMSAAGAYAWMAP 183 (271)
T ss_dssp CCC-----------------CCGGGSCH
T ss_pred CCccccccccc----ccCCCCccceeCH
Confidence 99998654322 2345789999998
No 230
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=262.70 Aligned_cols=161 Identities=24% Similarity=0.401 Sum_probs=134.4
Q ss_pred eecccccceEEEEEec---CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEccCCCC
Q 042902 435 LIGRGGVASVYKARIQ---DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYMPHGS 510 (599)
Q Consensus 435 ~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g~ 510 (599)
.||+|+||.||+|.+. ++..||||+++... ....++|.+|+++|++++|||||+++++|.. +..++|||||++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999864 46789999997653 3456889999999999999999999999976 56899999999999
Q ss_pred hhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc-eeeec
Q 042902 511 LEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS-LTQTQ 589 (599)
Q Consensus 511 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~ 589 (599)
|.+++......+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+.+...... .....
T Consensus 422 L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~ 498 (613)
T 2ozo_A 422 LHKFLVGKREEIPVSNVAELLHQVSMGMKYLE---EKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA 498 (613)
T ss_dssp HHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-----------
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccC
Confidence 99999877667999999999999999999999 889999999999999999999999999999876433221 12233
Q ss_pred ccCCccccCC
Q 042902 590 TLATIGYMAP 599 (599)
Q Consensus 590 ~~gt~~y~AP 599 (599)
..+|+.||||
T Consensus 499 ~~~~~~y~AP 508 (613)
T 2ozo_A 499 GKWPLKWYAP 508 (613)
T ss_dssp ---CCTTSCH
T ss_pred CCCccceeCH
Confidence 4567899998
No 231
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=238.07 Aligned_cols=167 Identities=29% Similarity=0.412 Sum_probs=138.4
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-----cccHHHHHHHHHHHhcCC---CCcceeEEEEEEcC
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-----EGAFKSFDIECDMMKRIR---HRNLIKIISSCSND 496 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~ 496 (599)
..++|+..+.||+|+||.||+|+.. +|+.||||++.... ......+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4578999999999999999999964 68999999986432 122356777888777765 99999999999876
Q ss_pred C-----eeeEEEEccCCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEc
Q 042902 497 D-----FKALVLEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLS 570 (599)
Q Consensus 497 ~-----~~~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~ 570 (599)
. ..++||||++ |+|.+++..... .+++..+..++.||++||+||| +.+|+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLH---ANCIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEcCCCCEEEe
Confidence 5 5799999996 599999876543 4899999999999999999999 8899999999999999999999999
Q ss_pred cccCCccCCcCCCceeeecccCCccccCC
Q 042902 571 DFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 571 DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|||+|+...... ......||+.||||
T Consensus 163 Dfg~a~~~~~~~---~~~~~~gt~~y~aP 188 (308)
T 3g33_A 163 DFGLARIYSYQM---ALTPVVVTLWYRAP 188 (308)
T ss_dssp SCSCTTTSTTCC---CSGGGGCCCSSCCH
T ss_pred eCccccccCCCc---ccCCccccccccCc
Confidence 999998654322 23456799999998
No 232
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.94 E-value=1.7e-27 Score=256.15 Aligned_cols=165 Identities=24% Similarity=0.372 Sum_probs=139.3
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
+.|...+.||+|+||.||+|+.. +++.||||++.... ......+.+|+++++.++|||||++++++.+.+..++|||
T Consensus 37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 116 (494)
T 3lij_A 37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME 116 (494)
T ss_dssp HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 46888999999999999999976 68999999997542 3345788999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC---CcEEEccccCCccCCcC
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN---MVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~---~~~kl~DFGla~~~~~~ 581 (599)
|+++|+|.+.+.... .+++..+..++.||++||.||| +.+|+||||||+|||++.. +.+||+|||+|+.+...
T Consensus 117 ~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~ 192 (494)
T 3lij_A 117 CYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ 192 (494)
T ss_dssp CCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTT
T ss_pred cCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCC
Confidence 999999998886643 4788999999999999999999 8899999999999999764 45999999999876433
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
. ......||+.|+||
T Consensus 193 ~---~~~~~~gt~~y~aP 207 (494)
T 3lij_A 193 K---KMKERLGTAYYIAP 207 (494)
T ss_dssp B---CBCCCCSCTTTCCH
T ss_pred c---cccccCCCcCeeCH
Confidence 2 23456799999998
No 233
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.94 E-value=3.9e-27 Score=236.98 Aligned_cols=166 Identities=29% Similarity=0.401 Sum_probs=145.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
.+.|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 356888899999999999999865 68999999997553 3456789999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++++|.+++... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 173 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ-- 173 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB--
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChheEEECCCCCEEEeecccceecCccc--
Confidence 99999999998653 4889999999999999999999 8899999999999999999999999999998664322
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 174 ~~~~~~~~~~~y~aP 188 (303)
T 3a7i_A 174 IKRNTFVGTPFWMAP 188 (303)
T ss_dssp CCBCCCCSCGGGCCH
T ss_pred cccCccCCCcCccCH
Confidence 123446789999998
No 234
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.94 E-value=1.4e-27 Score=246.58 Aligned_cols=173 Identities=23% Similarity=0.287 Sum_probs=140.3
Q ss_pred HHHHHHHhCCCCcCceecccccceEEEEEecCCcEEEEEEeccccc-----------ccHHHHHHHHHHHhcCCCCccee
Q 042902 420 HLELFQATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYE-----------GAFKSFDIECDMMKRIRHRNLIK 488 (599)
Q Consensus 420 ~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~-----------~~~~~~~~e~~~l~~l~h~niv~ 488 (599)
..++....++|...+.||+|+||.||+|...+|+.||||++..... ...+.+.+|++++++++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 4566777899999999999999999999988899999999854321 12378999999999999999999
Q ss_pred EEEEEEc-----CCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC
Q 042902 489 IISSCSN-----DDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD 563 (599)
Q Consensus 489 l~~~~~~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~ 563 (599)
+++++.. ....++||||++ |+|.+++......+++..+..++.||++||.||| +.+|+||||||+||+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~NIl~~~ 169 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLH---EAGVVHRDLHPGNILLAD 169 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECT
T ss_pred eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCcCEecCCChHHEEEcC
Confidence 9999854 236799999997 6898888877667899999999999999999999 889999999999999999
Q ss_pred CCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 564 NMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 564 ~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++.+||+|||+|+...... ......||+.|+||
T Consensus 170 ~~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aP 202 (362)
T 3pg1_A 170 NNDITICDFNLAREDTADA---NKTHYVTHRWYRAP 202 (362)
T ss_dssp TCCEEECCTTC------------------CGGGCCH
T ss_pred CCCEEEEecCccccccccc---ccceecccceecCc
Confidence 9999999999998543222 23446789999998
No 235
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.94 E-value=3.8e-27 Score=238.77 Aligned_cols=165 Identities=27% Similarity=0.424 Sum_probs=140.7
Q ss_pred CCcCceecccccceEEEEEec-----CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC--CeeeE
Q 042902 430 FSENNLIGRGGVASVYKARIQ-----DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFKAL 501 (599)
Q Consensus 430 ~~~~~~ig~G~~g~Vy~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~--~~~~l 501 (599)
|...+.||+|+||.||+|.+. +++.||||+++... ....+.+.+|++++++++||||+++++++.+. ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 478899999999999998753 68899999997553 33457799999999999999999999999874 57899
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++.... +++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+|+.....
T Consensus 113 v~e~~~~~~L~~~l~~~~--~~~~~~~~i~~~l~~~l~~LH---~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 187 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS--IGLAQLLLFAQQICEGMAYLH---AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187 (318)
T ss_dssp EECCCTTCBHHHHGGGSC--CCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTT
T ss_pred EEecccCCcHHHHHhhCC--CCHHHHHHHHHHHHHHHHHHH---hCCccCCCCchheEEEcCCCCEEECCcccccccccc
Confidence 999999999999997754 889999999999999999999 889999999999999999999999999999876543
Q ss_pred CCc-eeeecccCCccccCC
Q 042902 582 DQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~-~~~~~~~gt~~y~AP 599 (599)
... .......+|+.|+||
T Consensus 188 ~~~~~~~~~~~~~~~y~aP 206 (318)
T 3lxp_A 188 HEYYRVREDGDSPVFWYAP 206 (318)
T ss_dssp CSEEEC---CCCCGGGCCH
T ss_pred ccccccccCCCCCceeeCh
Confidence 322 223445688899998
No 236
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.94 E-value=1.2e-27 Score=238.72 Aligned_cols=169 Identities=25% Similarity=0.419 Sum_probs=147.1
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
..++|+..+.||+|+||.||+|.+. +++.||||++.... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 4567888899999999999999977 48899999996543 345789999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 505 YMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
|+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+|+......
T Consensus 90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 165 (288)
T 3kfa_A 90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT- 165 (288)
T ss_dssp CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHH---HHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS-
T ss_pred cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHH---HCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc-
Confidence 999999999997643 35889999999999999999999 8899999999999999999999999999998664332
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
........+|+.|+||
T Consensus 166 ~~~~~~~~~~~~y~aP 181 (288)
T 3kfa_A 166 YTAHAGAKFPIKWTAP 181 (288)
T ss_dssp SEEETTEEECGGGCCH
T ss_pred cccccCCccccCcCCh
Confidence 2334455678899998
No 237
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.94 E-value=1.6e-27 Score=243.46 Aligned_cols=164 Identities=33% Similarity=0.474 Sum_probs=132.7
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHH--HhcCCCCcceeEEEEEEc-----CCee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDM--MKRIRHRNLIKIISSCSN-----DDFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~--l~~l~h~niv~l~~~~~~-----~~~~ 499 (599)
.++|...+.||+|+||.||+|+. +++.||||+++... ...+..|.++ +..++||||+++++++.. ....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 46788899999999999999987 58999999996443 2344445444 455899999999986532 2366
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCC---------CeEEccCCCCCeeecCCCcEEEc
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSV---------PIIHCDLKPNNVLLDDNMVAHLS 570 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~---------~iiH~dlk~~Nill~~~~~~kl~ 570 (599)
++||||+++|+|.+++.... .++..+..++.||++||.||| +. +|+||||||+|||++.++.+||+
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~LH---~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYLH---TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHHH---CCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred EEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHHH---hhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 89999999999999997765 588889999999999999999 77 99999999999999999999999
Q ss_pred cccCCccCCcCCC------ceeeecccCCccccCC
Q 042902 571 DFGMAKPLLKEDQ------SLTQTQTLATIGYMAP 599 (599)
Q Consensus 571 DFGla~~~~~~~~------~~~~~~~~gt~~y~AP 599 (599)
|||+|+.+..... ........||+.|+||
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aP 197 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAP 197 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCH
T ss_pred eccceeecccccccCccccccccccCCCccceeCc
Confidence 9999987643221 1222345799999998
No 238
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.94 E-value=1.7e-27 Score=240.79 Aligned_cols=171 Identities=25% Similarity=0.433 Sum_probs=131.4
Q ss_pred HhCCCCcCceecccccceEEEEEec----CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC--
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ----DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD-- 497 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~-- 497 (599)
..++|...+.||+|+||.||+|.+. +++.||||+++... ....+.+.+|++++++++||||+++++++.+.+
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~ 111 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ 111 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence 3457888899999999999999864 34589999987542 334567999999999999999999999998765
Q ss_pred ---eeeEEEEccCCCChhhhhhc-----CCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEE
Q 042902 498 ---FKALVLEYMPHGSLEKCLYS-----SNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHL 569 (599)
Q Consensus 498 ---~~~lv~e~~~~g~L~~~l~~-----~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl 569 (599)
..++||||+++|+|.+++.. ....+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||
T Consensus 112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dikp~NIli~~~~~~kl 188 (313)
T 3brb_A 112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLS---NRNFLHRDLAARNCMLRDDMTVCV 188 (313)
T ss_dssp ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHH---TTTCCCCCCSGGGEEECTTSCEEE
T ss_pred CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEE
Confidence 34999999999999999842 2345899999999999999999999 899999999999999999999999
Q ss_pred ccccCCccCCcCCCceeeecccCCccccCC
Q 042902 570 SDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 570 ~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+|||+++.+.............+++.|+||
T Consensus 189 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 218 (313)
T 3brb_A 189 ADFGLSKKIYSGDYYRQGRIAKMPVKWIAI 218 (313)
T ss_dssp CSCSCC----------------CCGGGSCH
T ss_pred eecCcceecccccccCcccccCCCccccCc
Confidence 999999876544333333445678899998
No 239
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.94 E-value=3.5e-27 Score=254.48 Aligned_cols=166 Identities=26% Similarity=0.402 Sum_probs=141.8
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc-------------ccHHHHHHHHHHHhcCCCCcceeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE-------------GAFKSFDIECDMMKRIRHRNLIKIISS 492 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~e~~~l~~l~h~niv~l~~~ 492 (599)
.++|...+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 467899999999999999999976 588999999864321 335679999999999999999999999
Q ss_pred EEcCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC---cEEE
Q 042902 493 CSNDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM---VAHL 569 (599)
Q Consensus 493 ~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~---~~kl 569 (599)
+.+.+..++|||||++|+|.+++.... .+++..+..++.||+.||.||| +.+|+||||||+||+++.++ .+||
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl 190 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYLH---KHNIVHRDIKPENILLENKNSLLNIKI 190 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESSTTCCSSEEE
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeCCCcHHHEEEecCCCCccEEE
Confidence 999999999999999999999887643 4899999999999999999999 88999999999999998775 6999
Q ss_pred ccccCCccCCcCCCceeeecccCCccccCC
Q 042902 570 SDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 570 ~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+|||+|+.+.... ......||+.|+||
T Consensus 191 ~Dfg~a~~~~~~~---~~~~~~gt~~y~aP 217 (504)
T 3q5i_A 191 VDFGLSSFFSKDY---KLRDRLGTAYYIAP 217 (504)
T ss_dssp CCCTTCEECCTTS---CBCCCCSCTTTCCH
T ss_pred EECCCCEEcCCCC---ccccccCCcCCCCH
Confidence 9999998664332 23456799999998
No 240
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.94 E-value=1.8e-27 Score=255.52 Aligned_cols=166 Identities=23% Similarity=0.389 Sum_probs=143.1
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc--ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ--YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|...+.||+|+||.||+|+.. +++.||||++... .......+.+|++++++++||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 100 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence 356889999999999999999976 6899999998643 2345678999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec---CCCcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD---DNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~---~~~~~kl~DFGla~~~~~ 580 (599)
||+++|+|.+.+.... .+++..+..++.||++||.||| +.+|+||||||+||+++ .++.+||+|||+|+.+..
T Consensus 101 e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~ 176 (486)
T 3mwu_A 101 ELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176 (486)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCC
T ss_pred EcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCC
Confidence 9999999998886654 4889999999999999999999 88999999999999995 456799999999986543
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
.. ......||+.||||
T Consensus 177 ~~---~~~~~~gt~~y~aP 192 (486)
T 3mwu_A 177 NT---KMKDRIGTAYYIAP 192 (486)
T ss_dssp C-------CCTTGGGGCCG
T ss_pred CC---ccCCCcCCCCCCCH
Confidence 22 23456799999999
No 241
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=1.5e-27 Score=239.27 Aligned_cols=168 Identities=23% Similarity=0.377 Sum_probs=141.1
Q ss_pred CCCcCceecccccceEEEEEecC----CcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee-eEE
Q 042902 429 GFSENNLIGRGGVASVYKARIQD----GIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK-ALV 502 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~-~lv 502 (599)
.|...+.||+|+||.||+|.+.+ +..||+|.+.... ....+.|.+|++++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 34556899999999999998542 2379999997543 34567899999999999999999999999876654 999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++......+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+....
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 178 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE 178 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence 9999999999999886667899999999999999999999 8899999999999999999999999999998654332
Q ss_pred C--ceeeecccCCccccCC
Q 042902 583 Q--SLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~--~~~~~~~~gt~~y~AP 599 (599)
. ........+|+.|+||
T Consensus 179 ~~~~~~~~~~~~~~~y~aP 197 (298)
T 3pls_A 179 YYSVQQHRHARLPVKWTAL 197 (298)
T ss_dssp GGCSCCSSCTTCGGGGSCH
T ss_pred ccccccCcCCCCCccccCh
Confidence 1 1222345678899998
No 242
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1.5e-27 Score=246.19 Aligned_cols=173 Identities=29% Similarity=0.356 Sum_probs=146.0
Q ss_pred cccHHHHHHHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC-----CCcceeEE
Q 042902 417 RFTHLELFQATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-----HRNLIKII 490 (599)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----h~niv~l~ 490 (599)
.++..+.....++|...+.||+|+||.||+|+.. +++.||||+++.. ....+.+..|+++++.++ ||||++++
T Consensus 24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~ 102 (360)
T 3llt_A 24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYH 102 (360)
T ss_dssp SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence 3333333445678999999999999999999975 6899999999643 234466788999999886 99999999
Q ss_pred EEEEcCCeeeEEEEccCCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC------
Q 042902 491 SSCSNDDFKALVLEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD------ 563 (599)
Q Consensus 491 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~------ 563 (599)
+++...+..++||||+ +++|.+++..... .+++..+..++.||+.||+||| +.+|+||||||+|||++.
T Consensus 103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~NIll~~~~~~~~ 178 (360)
T 3llt_A 103 GKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLR---KMSLTHTDLKPENILLDDPYFEKS 178 (360)
T ss_dssp EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCTTCCEE
T ss_pred ceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCcccEEEcccccccc
Confidence 9999999999999999 9999999976543 5889999999999999999999 899999999999999975
Q ss_pred -------------------CCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 564 -------------------NMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 564 -------------------~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++.+||+|||+|+..... .....||+.|+||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aP 228 (360)
T 3llt_A 179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAP 228 (360)
T ss_dssp EEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCH
T ss_pred ccchhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCc
Confidence 789999999999854322 2345789999998
No 243
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.94 E-value=3.4e-27 Score=234.90 Aligned_cols=165 Identities=27% Similarity=0.403 Sum_probs=141.0
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc------cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY------EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
++|...+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++||||+++++++.+.+..+
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 84 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV 84 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence 45888899999999999999976 68999999986542 124678999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC----cEEEccccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM----VAHLSDFGMAK 576 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~----~~kl~DFGla~ 576 (599)
+||||+++++|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++ .+||+|||+++
T Consensus 85 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~ 160 (283)
T 3bhy_A 85 LILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYLH---SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH 160 (283)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCE
T ss_pred EEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCChHHEEEecCCCCCCceEEEecccce
Confidence 9999999999999987643 4889999999999999999999 88999999999999998877 89999999998
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
...... ......||+.|+||
T Consensus 161 ~~~~~~---~~~~~~~~~~y~aP 180 (283)
T 3bhy_A 161 KIEAGN---EFKNIFGTPEFVAP 180 (283)
T ss_dssp ECC-----------CCCGGGCCH
T ss_pred eccCCC---cccccCCCcCccCc
Confidence 654322 22345689999998
No 244
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=3.3e-27 Score=233.59 Aligned_cols=221 Identities=25% Similarity=0.314 Sum_probs=145.0
Q ss_pred cCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEccc
Q 042902 3 LWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSN 82 (599)
Q Consensus 3 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 82 (599)
+.++.+.+. ..+..+++|+.|++++|.++.+ ..+..+++|++|+|++|.++.++ .+..+++|++|+|++
T Consensus 26 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 26 LKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDIS-------ALKELTNLTYLILTG 94 (272)
T ss_dssp HTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCCG-------GGTTCTTCCEEECTT
T ss_pred hcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCch-------hhcCCCCCCEEECCC
Confidence 445555544 3366789999999999999874 35899999999999999998753 488999999999999
Q ss_pred CcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccC
Q 042902 83 NSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSI 162 (599)
Q Consensus 83 N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 162 (599)
|.|+++.+..|.. +++|++|+|++|++++..+..|..+++|++|+|++|++++..
T Consensus 95 n~l~~~~~~~~~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 149 (272)
T 3rfs_A 95 NQLQSLPNGVFDK-------------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149 (272)
T ss_dssp SCCCCCCTTTTTT-------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcC-------------------------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC
Confidence 9998665544444 455555555555555555555555555555555555555544
Q ss_pred ChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCccccCcccccccc
Q 042902 163 PDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLPLEIGNLR 241 (599)
Q Consensus 163 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 241 (599)
+..|..+++|+.|++++|++++..+..|..+++|++|++++|+++.+|. .+..+++|+.|++++|.+.+. ++
T Consensus 150 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~ 222 (272)
T 3rfs_A 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CP 222 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TT
T ss_pred HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------Cc
Confidence 4445555555555555555555555555555666666666666665543 345556666666666665532 33
Q ss_pred cccEEEccCCccCCCCCccccCccc
Q 042902 242 VLVQIDLSMNNFSGFIPTTIGDLKD 266 (599)
Q Consensus 242 ~L~~L~Ls~N~l~~~~~~~~~~l~~ 266 (599)
+|+.|+++.|.++|.+|..++.+..
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHHhCCCcccCcccccCC
Confidence 5666667777777766766665544
No 245
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.94 E-value=2.1e-27 Score=242.05 Aligned_cols=167 Identities=29% Similarity=0.433 Sum_probs=138.9
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc--ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE--GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|+..+.||+|+||.||+|+.. +|+.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 356888899999999999999976 589999999865432 23456889999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||++++++.++..... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+|+.+.....
T Consensus 104 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~LH---~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 179 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFCH---SHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE 179 (331)
T ss_dssp ECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHH---HCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence 9999999988765543 4889999999999999999999 88999999999999999999999999999986543222
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 180 --~~~~~~~t~~y~aP 193 (331)
T 4aaa_A 180 --VYDDEVATRWYRAP 193 (331)
T ss_dssp ------CCCCCTTCCH
T ss_pred --ccCCCcCCccccCc
Confidence 23445789999998
No 246
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=99.94 E-value=2e-27 Score=245.57 Aligned_cols=162 Identities=27% Similarity=0.352 Sum_probs=134.6
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc--ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC------
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ--YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------ 497 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 497 (599)
.++|...+.||+|+||.||+|... +|+.||||++... .....+++.+|+++++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467889999999999999999975 6999999998543 2334567899999999999999999999997653
Q ss_pred eeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 498 FKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
..|+||||+ +++|.+++... .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYIH---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 459999999 88999998764 3788899999999999999999 88999999999999999999999999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.... .....||+.|+||
T Consensus 178 ~~~~-----~~~~~~t~~y~aP 194 (367)
T 1cm8_A 178 ADSE-----MTGYVVTRWYRAP 194 (367)
T ss_dssp CCSS-----CCSSCSCGGGCCT
T ss_pred cccc-----cCcCcCCCCcCCH
Confidence 5322 2446789999999
No 247
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.94 E-value=3.7e-28 Score=244.27 Aligned_cols=166 Identities=28% Similarity=0.451 Sum_probs=128.3
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhc--CCCCcceeEEEEEEcCC----eeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKR--IRHRNLIKIISSCSNDD----FKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~~~l 501 (599)
++|...+.||+|+||.||+|++. |+.||||+++.. ....+..|.+++.. ++||||+++++++...+ ..++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 78 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEE
T ss_pred ceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEE
Confidence 56889999999999999999875 899999998643 34567778888887 78999999999998776 7899
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGY-----SVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~-----~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
||||+++|+|.+++.... +++..+..++.|++.||+|||... +.+|+||||||+||+++.++.+||+|||+|+
T Consensus 79 v~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a~ 156 (303)
T 3gxj_A 79 VSDYHEHGSLFDYLNRYT--VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp EEECCTTCCHHHHHHHCC--BCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-C
T ss_pred EEeccCCCCHHHHHhccC--cchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcce
Confidence 999999999999997653 677788899999999999999332 5789999999999999999999999999997
Q ss_pred cCCcCCCce--eeecccCCccccCC
Q 042902 577 PLLKEDQSL--TQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~--~~~~~~gt~~y~AP 599 (599)
......... ......||+.|+||
T Consensus 157 ~~~~~~~~~~~~~~~~~gt~~y~aP 181 (303)
T 3gxj_A 157 RHDSATDTIDIAPNHRVGTKRYMAP 181 (303)
T ss_dssp CEETTTTEESCC-----CCGGGCCH
T ss_pred eccCCCcccccccCCCCcCccccCH
Confidence 654333221 12344799999998
No 248
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=3.2e-27 Score=238.29 Aligned_cols=168 Identities=25% Similarity=0.314 Sum_probs=138.4
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc---ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE---GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|...+.||+|+||.||+|... +++.||||++..... ...+.+.+|+.++++++||||+++++++..++..++|
T Consensus 33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 112 (309)
T 2h34_A 33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD 112 (309)
T ss_dssp -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence 468999999999999999999976 689999999975432 2346789999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++++|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 113 ~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 188 (309)
T 2h34_A 113 MRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASATTDEK 188 (309)
T ss_dssp EECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECSCCC--------
T ss_pred EEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCcCCcCCCChHHEEEcCCCCEEEecCccCccccccc
Confidence 99999999999987643 4889999999999999999999 8899999999999999999999999999998654322
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
........||+.|+||
T Consensus 189 -~~~~~~~~~~~~y~aP 204 (309)
T 2h34_A 189 -LTQLGNTVGTLYYMAP 204 (309)
T ss_dssp ---------CCGGGCCG
T ss_pred -cccccccCCCcCccCH
Confidence 1223456789999998
No 249
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=241.75 Aligned_cols=170 Identities=24% Similarity=0.306 Sum_probs=141.8
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEE----cCCeeeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCS----NDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----~~~~~~l 501 (599)
.++|...+.||+|+||.||+|+. .+|+.||||++........+.+.+|++++++++||||+++++++. ..+..++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 35688899999999999999997 479999999987665566778999999999999999999999986 2347899
Q ss_pred EEEccCCCChhhhhhc---CCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 502 VLEYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
||||+++|+|.+++.. ....+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~ 184 (317)
T 2buj_A 108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQA 184 (317)
T ss_dssp EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTSCEEECCCSSCEES
T ss_pred EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEcCCCCEEEEecCcchhc
Confidence 9999999999998875 3456899999999999999999999 889999999999999999999999999998865
Q ss_pred CcCCCc-------eeeecccCCccccCC
Q 042902 579 LKEDQS-------LTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~-------~~~~~~~gt~~y~AP 599 (599)
...... .......||+.|+||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~gt~~y~aP 212 (317)
T 2buj_A 185 CIHVEGSRQALTLQDWAAQRCTISYRAP 212 (317)
T ss_dssp CEEEESHHHHHHHHHHHHHHSCGGGCCG
T ss_pred ccccccccccccccccccccCCcccCCH
Confidence 321110 001234579999998
No 250
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.94 E-value=3.4e-27 Score=235.08 Aligned_cols=164 Identities=27% Similarity=0.434 Sum_probs=143.5
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 56888899999999999999976 57899999986432 234567999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
||+++|+|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||++......
T Consensus 94 e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~-- 167 (284)
T 2vgo_A 94 EFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYCH---ERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSL-- 167 (284)
T ss_dssp CCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSS--
T ss_pred EeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCHHHEEEcCCCCEEEecccccccCccc--
Confidence 9999999999987654 4788999999999999999999 899999999999999999999999999999755322
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 168 --~~~~~~~~~~y~aP 181 (284)
T 2vgo_A 168 --RRRTMCGTLDYLPP 181 (284)
T ss_dssp --CBCCCCSCGGGCCH
T ss_pred --ccccccCCCCcCCH
Confidence 12345789999998
No 251
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=99.94 E-value=1.6e-27 Score=253.63 Aligned_cols=163 Identities=26% Similarity=0.319 Sum_probs=133.3
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc--ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC------
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ--YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------ 497 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 497 (599)
.++|+..+.||+|+||.||+|... +|+.||||++... .....+++.+|+++++.++|||||++++++...+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 467999999999999999999865 6899999999654 3344677899999999999999999999996553
Q ss_pred eeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 498 FKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
..|+|||||++ ++.+.+.. .+++..+..++.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+.
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~lH---~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~ 213 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 213 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred eEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence 56999999976 46666543 3788899999999999999999 88999999999999999999999999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.... ......+||++|+||
T Consensus 214 ~~~~---~~~~~~~gt~~y~aP 232 (464)
T 3ttj_A 214 AGTS---FMMTPYVVTRYYRAP 232 (464)
T ss_dssp ---C---CCC----CCCTTCCH
T ss_pred cCCC---cccCCCcccccccCH
Confidence 5332 223456899999998
No 252
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.94 E-value=4.7e-27 Score=237.62 Aligned_cols=167 Identities=28% Similarity=0.361 Sum_probs=141.2
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
..+.|+..+.||+|+||.||+|... +|+.||||.+.... ..+.+.+|++++++++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 3567899999999999999999876 58999999996543 34678999999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|+++|+|.+++......+++..+..++.|++.||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~-- 179 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLH---FMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM-- 179 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB--
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc--
Confidence 99999999999755556899999999999999999999 8899999999999999999999999999998654322
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......||+.|+||
T Consensus 180 ~~~~~~~~~~~y~aP 194 (314)
T 3com_A 180 AKRNTVIGTPFWMAP 194 (314)
T ss_dssp SCBCCCCSCGGGCCH
T ss_pred cccCccCCCCCccCh
Confidence 122345789999998
No 253
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.94 E-value=1.2e-27 Score=243.58 Aligned_cols=170 Identities=24% Similarity=0.395 Sum_probs=139.1
Q ss_pred hCCCCcCceecccccceEEEEEe------cCCcEEEEEEeccc-ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee
Q 042902 427 TNGFSENNLIGRGGVASVYKARI------QDGIEVAVKVFDLQ-YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~------~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~ 499 (599)
.++|...+.||+|+||.||+|++ .+++.||||.+... ......++..|+.++++++||||+++++++.+.+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 35788999999999999999984 25778999999644 334456799999999999999999999999999999
Q ss_pred eEEEEccCCCChhhhhhcCC------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC---CCcEEEc
Q 042902 500 ALVLEYMPHGSLEKCLYSSN------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD---NMVAHLS 570 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~---~~~~kl~ 570 (599)
++||||+++|+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH---~~~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLE---ENHFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHh---hCCeecCcCCHhHEEEecCCCcceEEEC
Confidence 99999999999999998653 34888999999999999999999 889999999999999984 4469999
Q ss_pred cccCCccCCcCCCceeeecccCCccccCC
Q 042902 571 DFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 571 DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|||+++...............||+.|+||
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP 214 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPP 214 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCH
T ss_pred ccccccccccccccccCCCcCCCcceeCH
Confidence 99999855433322233456789999998
No 254
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.94 E-value=3.3e-27 Score=234.03 Aligned_cols=166 Identities=27% Similarity=0.409 Sum_probs=137.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
.++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 357888999999999999999976 79999999986442 33456899999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++++|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 99999999999987654 4788999999999999999999 8899999999999999999999999999998654322
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 166 ---~~~~~~~~~~y~aP 179 (276)
T 2h6d_A 166 ---FLRTSCGSPNYAAP 179 (276)
T ss_dssp --------------CCT
T ss_pred ---ceecccCCccccCH
Confidence 22345689999998
No 255
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=99.94 E-value=6.5e-27 Score=235.46 Aligned_cols=169 Identities=24% Similarity=0.360 Sum_probs=140.9
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc----cccHHHHHHHHHHHhcCCCCcceeEEEEEE--cCCee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY----EGAFKSFDIECDMMKRIRHRNLIKIISSCS--NDDFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~ 499 (599)
.++|...+.||+|+||.||+|... +++.||||+++... ....+.+.+|++++++++||||+++++++. +.+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 467999999999999999999975 68999999996542 234578999999999999999999999984 44578
Q ss_pred eEEEEccCCCChhhhhhcC-CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 500 ALVLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
++||||+++| +.+++... ...+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH---~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH---SQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH---HCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999876 66666543 346889999999999999999999 889999999999999999999999999999876
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
.............||+.|+||
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aP 180 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPP 180 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCH
T ss_pred CccccccccccCCCCCCCcCh
Confidence 543333334456799999998
No 256
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.94 E-value=5.5e-27 Score=235.18 Aligned_cols=167 Identities=28% Similarity=0.432 Sum_probs=145.2
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---------cccHHHHHHHHHHHhcCC-CCcceeEEEEEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---------EGAFKSFDIECDMMKRIR-HRNLIKIISSCS 494 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---------~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~ 494 (599)
..++|...+.||+|+||.||+|... +|+.||||+++... ....+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 3568899999999999999999976 68999999986442 123467889999999996 999999999999
Q ss_pred cCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccC
Q 042902 495 NDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGM 574 (599)
Q Consensus 495 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGl 574 (599)
..+..++||||+++|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred cCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCcceEEEcCCCcEEEecccc
Confidence 9999999999999999999997643 4889999999999999999999 88999999999999999999999999999
Q ss_pred CccCCcCCCceeeecccCCccccCC
Q 042902 575 AKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 575 a~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++...... ......||+.|+||
T Consensus 171 ~~~~~~~~---~~~~~~~~~~y~aP 192 (298)
T 1phk_A 171 SCQLDPGE---KLREVCGTPSYLAP 192 (298)
T ss_dssp CEECCTTC---CBCCCCSCGGGCCH
T ss_pred hhhcCCCc---ccccccCCccccCH
Confidence 98664332 22345789999998
No 257
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.94 E-value=7.9e-28 Score=260.82 Aligned_cols=168 Identities=24% Similarity=0.419 Sum_probs=143.6
Q ss_pred HhCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
..++|...+.||+|+||.||+|.+.++..||||+++... ...++|.+|+++|++++||||+++++++.+ +..++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 345688889999999999999999888899999997543 345789999999999999999999999876 678999999
Q ss_pred cCCCChhhhhhcC-CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 506 MPHGSLEKCLYSS-NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 506 ~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
|++|+|.+++... ...+++..+..|+.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+.+... ..
T Consensus 343 ~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-~~ 418 (535)
T 2h8h_A 343 MSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN-EY 418 (535)
T ss_dssp CTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH-HH
T ss_pred hcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCC-ce
Confidence 9999999999753 234889999999999999999999 889999999999999999999999999999865422 11
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.......+|+.||||
T Consensus 419 ~~~~~~~~~~~y~aP 433 (535)
T 2h8h_A 419 TARQGAKFPIKWTAP 433 (535)
T ss_dssp HTTCSTTSCGGGSCH
T ss_pred ecccCCcCcccccCH
Confidence 122344578899998
No 258
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.9e-27 Score=238.41 Aligned_cols=162 Identities=28% Similarity=0.458 Sum_probs=132.0
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEccC
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYMP 507 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 507 (599)
++|+..+.||+|+||.||+|++. ++.||||++... ...+.|.+|++++++++||||+++++++.+ ..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCC
Confidence 46778899999999999999985 789999998643 345789999999999999999999998863 4899999999
Q ss_pred CCChhhhhhcCCC--cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc-EEEccccCCccCCcCCCc
Q 042902 508 HGSLEKCLYSSNY--ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV-AHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 508 ~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~-~kl~DFGla~~~~~~~~~ 584 (599)
+|+|.+++..... .+++..+..++.|+++||+|||+....+|+||||||+||+++.++. +||+|||+|+.....
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~--- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH--- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---
Confidence 9999999986553 4688889999999999999999332289999999999999998876 899999999855322
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.....||+.|+||
T Consensus 160 --~~~~~gt~~y~aP 172 (307)
T 2eva_A 160 --MTNNKGSAAWMAP 172 (307)
T ss_dssp -------CCTTSSCH
T ss_pred --cccCCCCCceECh
Confidence 2334689999998
No 259
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.94 E-value=1.8e-27 Score=255.66 Aligned_cols=165 Identities=25% Similarity=0.417 Sum_probs=145.0
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|+.. +|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 46888999999999999999976 79999999986442 345678999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee---cCCCcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---DDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---~~~~~~kl~DFGla~~~~~ 580 (599)
||+++|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||++ +.++.+||+|||+|+.+..
T Consensus 106 e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~ 181 (484)
T 3nyv_A 106 EVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA 181 (484)
T ss_dssp CCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc
Confidence 9999999999887654 4889999999999999999999 8899999999999999 4678999999999986643
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
.. ......||+.||||
T Consensus 182 ~~---~~~~~~gt~~y~aP 197 (484)
T 3nyv_A 182 SK---KMKDKIGTAYYIAP 197 (484)
T ss_dssp CC---SHHHHTTGGGTCCH
T ss_pred cc---ccccCCCCccccCc
Confidence 32 23446799999998
No 260
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.94 E-value=1.4e-27 Score=243.30 Aligned_cols=167 Identities=26% Similarity=0.393 Sum_probs=134.3
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
..++|...+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 111 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLI 111 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEE
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEE
Confidence 3567999999999999999999865 68999999996543 22345788999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec-----CCCcEEEccccCCcc
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD-----DNMVAHLSDFGMAKP 577 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~-----~~~~~kl~DFGla~~ 577 (599)
|||++ |+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++ .++.+||+|||+|+.
T Consensus 112 ~e~~~-~~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~ 186 (329)
T 3gbz_A 112 FEYAE-NDLKKYMDKNP-DVSMRVIKSFLYQLINGVNFCH---SRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARA 186 (329)
T ss_dssp EECCS-EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHH
T ss_pred EecCC-CCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCEECCCCCHHHEEEecCCCCccceEEECcCCCccc
Confidence 99997 59999987654 3889999999999999999999 88999999999999994 555699999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... .......||+.|+||
T Consensus 187 ~~~~~--~~~~~~~~t~~y~aP 206 (329)
T 3gbz_A 187 FGIPI--RQFTHEIITLWYRPP 206 (329)
T ss_dssp HC-------------CCTTCCH
T ss_pred cCCcc--cccCCCcCCccccCH
Confidence 53222 223445789999998
No 261
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=99.94 E-value=3.1e-27 Score=246.90 Aligned_cols=161 Identities=24% Similarity=0.351 Sum_probs=128.9
Q ss_pred CCCCcC-ceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHh-cCCCCcceeEEEEEEc----CCeee
Q 042902 428 NGFSEN-NLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMK-RIRHRNLIKIISSCSN----DDFKA 500 (599)
Q Consensus 428 ~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~-~l~h~niv~l~~~~~~----~~~~~ 500 (599)
++|... +.||+|+||+||+|... +|+.||||+++.. ..+.+|++++. ..+||||+++++++.. .+..|
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 345554 68999999999999876 6899999998532 45677888774 4589999999998865 55789
Q ss_pred EEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC---CCcEEEccccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD---NMVAHLSDFGMAK 576 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~---~~~~kl~DFGla~ 576 (599)
+|||||++|+|.+++.... ..+++..+..|+.||+.||.||| +.+|+||||||+|||++. ++.+||+|||+|+
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~ 212 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 212 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCcCcceEEEecCCCCccEEEEeccccc
Confidence 9999999999999998754 35899999999999999999999 889999999999999997 7899999999998
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
...... .....+||+.||||
T Consensus 213 ~~~~~~---~~~~~~gt~~y~aP 232 (400)
T 1nxk_A 213 ETTSHN---SLTTPCYTPYYVAP 232 (400)
T ss_dssp ECC--------------CTTCCG
T ss_pred ccCCCC---ccccCCCCCCccCH
Confidence 654322 23456789999998
No 262
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.94 E-value=2.4e-27 Score=238.59 Aligned_cols=165 Identities=25% Similarity=0.391 Sum_probs=140.9
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
.++|...+.||+|+||.||+|+.. +|+.||||+++.......+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 356888999999999999999976 6999999999765544556789999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee---cCCCcEEEccccCCccCCcCC
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---DDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---~~~~~~kl~DFGla~~~~~~~ 582 (599)
+++|+|.+++...+ .+++..+..++.|++.||.||| +.+|+||||||+||++ +.++.+||+|||+++.....
T Consensus 88 ~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~- 162 (304)
T 2jam_A 88 VSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG- 162 (304)
T ss_dssp CCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB-
T ss_pred CCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC-
Confidence 99999999887544 4788999999999999999999 8899999999999999 77889999999999754322
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 163 ---~~~~~~~~~~y~aP 176 (304)
T 2jam_A 163 ---IMSTACGTPGYVAP 176 (304)
T ss_dssp ---TTHHHHSCCCBCCT
T ss_pred ---ccccccCCCCccCh
Confidence 12345689999999
No 263
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.94 E-value=4.4e-27 Score=239.33 Aligned_cols=166 Identities=31% Similarity=0.528 Sum_probs=137.8
Q ss_pred CCCCcCceecccccceEEEEEec-CCcE--EEEEEeccc-ccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIE--VAVKVFDLQ-YEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~--vavK~~~~~-~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 502 (599)
++|...+.||+|+||.||+|+.. +|.. ||||.++.. .....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 56888899999999999999865 5664 499988643 233456799999999999 899999999999999999999
Q ss_pred EEccCCCChhhhhhcCC---------------CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcE
Q 042902 503 LEYMPHGSLEKCLYSSN---------------YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVA 567 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~---------------~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~ 567 (599)
|||+++|+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCccceEEEcCCCeE
Confidence 99999999999997654 35889999999999999999999 8999999999999999999999
Q ss_pred EEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 568 HLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 568 kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||+|||+++..... .......+|+.|+||
T Consensus 182 kL~Dfg~~~~~~~~---~~~~~~~~~~~y~aP 210 (327)
T 1fvr_A 182 KIADFGLSRGQEVY---VKKTMGRLPVRWMAI 210 (327)
T ss_dssp EECCTTCEESSCEE---CCC----CCTTTCCH
T ss_pred EEcccCcCcccccc---ccccCCCCCccccCh
Confidence 99999999743221 122334578899998
No 264
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.94 E-value=1.5e-27 Score=246.20 Aligned_cols=164 Identities=23% Similarity=0.372 Sum_probs=142.3
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEY 505 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 505 (599)
++|...+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 56888999999999999999976 68999999997553 33457799999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 506 MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSV-PIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~-~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
+++|+|.+++.... .+++..+..++.|+++||.||| +. +|+||||||+||+++.++.+||+|||+|+.....
T Consensus 113 ~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~lh---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--- 185 (360)
T 3eqc_A 113 MDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYLR---EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS--- 185 (360)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH---
T ss_pred CCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH---HhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc---
Confidence 99999999997654 4788899999999999999999 64 8999999999999999999999999999754321
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 186 -~~~~~~gt~~y~aP 199 (360)
T 3eqc_A 186 -MANSFVGTRSYMSP 199 (360)
T ss_dssp -C----CCCCTTCCH
T ss_pred -cccCCCCCCCeECH
Confidence 22345799999998
No 265
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.94 E-value=2.5e-27 Score=235.72 Aligned_cols=168 Identities=24% Similarity=0.408 Sum_probs=139.8
Q ss_pred hCCCCcCceecccccceEEEEEecC----CcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQD----GIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
.++|...+.||+|+||.||+|.+.. +..||||.+.... ....+.|.+|++++++++||||+++++++.+ +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 4578888999999999999998643 3469999987553 3456789999999999999999999999865 45689
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 90 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 166 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLE---SINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDE 166 (281)
T ss_dssp EEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---
T ss_pred EEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCccceEEECCCCcEEeCccCCCcccccc
Confidence 99999999999999876666899999999999999999999 899999999999999999999999999999866433
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
.. .......+|+.|+||
T Consensus 167 ~~-~~~~~~~~~~~y~aP 183 (281)
T 3cc6_A 167 DY-YKASVTRLPIKWMSP 183 (281)
T ss_dssp -------CCCCCGGGCCH
T ss_pred cc-cccccCCCCcceeCc
Confidence 21 223345678899998
No 266
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.94 E-value=1.2e-27 Score=240.49 Aligned_cols=172 Identities=26% Similarity=0.357 Sum_probs=127.5
Q ss_pred HHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
...++|...+.||+|+||.||+|... +++.||||++.... ....+++.+|++++++++||||+++++++...+..++|
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 34578999999999999999999865 68999999986543 33456788999999999999999999999999999999
Q ss_pred EEccCCCChhhhhhc-------CCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCC
Q 042902 503 LEYMPHGSLEKCLYS-------SNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMA 575 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~-------~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla 575 (599)
|||+++|+|.+++.. ....+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||++
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 999999999999864 2345899999999999999999999 889999999999999999999999999999
Q ss_pred ccCCcCCC---ceeeecccCCccccCC
Q 042902 576 KPLLKEDQ---SLTQTQTLATIGYMAP 599 (599)
Q Consensus 576 ~~~~~~~~---~~~~~~~~gt~~y~AP 599 (599)
+....... ........||+.|+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aP 195 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAP 195 (303)
T ss_dssp HHCC---------------CCCTTCCH
T ss_pred heeccCCCccchhhhcccCCCccccCH
Confidence 86543221 1112345789999998
No 267
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.94 E-value=2.9e-27 Score=235.33 Aligned_cols=163 Identities=26% Similarity=0.495 Sum_probs=140.4
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEc----------
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSN---------- 495 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~---------- 495 (599)
..+|+..+.||+|+||.||+|.+. +|+.||||+++... +.+.+|++++++++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 346888999999999999999986 79999999996543 356789999999999999999998854
Q ss_pred ------CCeeeEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEE
Q 042902 496 ------DDFKALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAH 568 (599)
Q Consensus 496 ------~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~k 568 (599)
....++||||+++|+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++.++.+|
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~k 162 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVK 162 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEE
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCeeeccCCHHHEEEcCCCCEE
Confidence 345799999999999999997542 35889999999999999999999 88999999999999999999999
Q ss_pred EccccCCccCCcCCCceeeecccCCccccCC
Q 042902 569 LSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 569 l~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+|||+++....... .....||+.|+||
T Consensus 163 l~Dfg~~~~~~~~~~---~~~~~~~~~y~aP 190 (284)
T 2a19_B 163 IGDFGLVTSLKNDGK---RTRSKGTLRYMSP 190 (284)
T ss_dssp ECCCTTCEESSCCSC---CCCCCSCCTTSCH
T ss_pred ECcchhheecccccc---ccccCCcccccCh
Confidence 999999987644322 2345699999998
No 268
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.94 E-value=5.7e-27 Score=236.57 Aligned_cols=167 Identities=29% Similarity=0.435 Sum_probs=132.9
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|... +|+.||||+++.. .....+++.+|++++++++||||+++++++...+..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 46888999999999999999864 7999999999753 2334567899999999999999999999999999999999
Q ss_pred EccCCCChhhhhhc---CCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
||+++|+|.+++.. ....+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~ 188 (310)
T 2wqm_A 112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS 188 (310)
T ss_dssp ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECCC--------
T ss_pred ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHh---hCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecC
Confidence 99999999998864 3345889999999999999999999 88999999999999999999999999999986543
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
... ......||+.|+||
T Consensus 189 ~~~--~~~~~~~~~~y~aP 205 (310)
T 2wqm_A 189 KTT--AAHSLVGTPYYMSP 205 (310)
T ss_dssp ------------CCSSCCH
T ss_pred CCc--cccccCCCeeEeCh
Confidence 221 22345789999998
No 269
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.94 E-value=8.5e-27 Score=232.94 Aligned_cols=163 Identities=26% Similarity=0.370 Sum_probs=138.5
Q ss_pred CCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEc----CCeeeE
Q 042902 429 GFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSN----DDFKAL 501 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~l 501 (599)
.|...+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|++++++++||||+++++++.. ....++
T Consensus 27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 106 (290)
T 1t4h_A 27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL 106 (290)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEE
Confidence 3666788999999999999875 68899999986542 3345779999999999999999999998865 346899
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEccCCCCCeeec-CCCcEEEccccCCccC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVP--IIHCDLKPNNVLLD-DNMVAHLSDFGMAKPL 578 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~--iiH~dlk~~Nill~-~~~~~kl~DFGla~~~ 578 (599)
||||+++|+|.+++.... .+++..+..++.|+++||.||| +.+ |+||||||+||+++ +++.+||+|||+|+..
T Consensus 107 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~ 182 (290)
T 1t4h_A 107 VTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFLH---TRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK 182 (290)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---TSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred EEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHHH---cCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccc
Confidence 999999999999997643 4788999999999999999999 777 99999999999998 7899999999999754
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
... ......||+.|+||
T Consensus 183 ~~~----~~~~~~~t~~y~aP 199 (290)
T 1t4h_A 183 RAS----FAKAVIGTPEFMAP 199 (290)
T ss_dssp CTT----SBEESCSSCCCCCG
T ss_pred ccc----ccccccCCcCcCCH
Confidence 322 22345799999998
No 270
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=99.94 E-value=8.5e-28 Score=249.58 Aligned_cols=163 Identities=17% Similarity=0.227 Sum_probs=132.9
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEeccc---ccccHHHHHHHH---HHHhcCCCCcceeEE-------EE
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQ---YEGAFKSFDIEC---DMMKRIRHRNLIKII-------SS 492 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~---~~~~~~~~~~e~---~~l~~l~h~niv~l~-------~~ 492 (599)
.++|...+.||+|+||.||+|++ .+|+.||||++... .....+.|.+|+ +++++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 35678889999999999999996 46999999999743 334567899999 555666899999998 66
Q ss_pred EEcCC-----------------eeeEEEEccCCCChhhhhhcCCC------cCCHHHHHHHHHHHHHHHHHHhcCCCCCe
Q 042902 493 CSNDD-----------------FKALVLEYMPHGSLEKCLYSSNY------ILDIFQRLNIMIDVASALEYLHFGYSVPI 549 (599)
Q Consensus 493 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~lH~~~~~~i 549 (599)
+.+.+ ..++||||+ +|+|.+++...+. .+++..+..|+.||++||+||| +.+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHH---HTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHH---hCCe
Confidence 65553 278999999 6899999875432 2335778889999999999999 8899
Q ss_pred EEccCCCCCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 550 IHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 550 iH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+||||||+|||++.++.+||+|||+|+.... ......| +.||||
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aP 271 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPP 271 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccCh
Confidence 9999999999999999999999999985321 2345567 999998
No 271
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=99.94 E-value=8.1e-27 Score=242.74 Aligned_cols=164 Identities=26% Similarity=0.400 Sum_probs=134.6
Q ss_pred HHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcC-------
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSND------- 496 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------- 496 (599)
...++|...+.||+|+||.||+|+.. +|+.||||++..... ...+|+++++.++|||||++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 45678999999999999999999864 799999999864432 223699999999999999999998442
Q ss_pred -------------------------------CeeeEEEEccCCCChhhhhhc---CCCcCCHHHHHHHHHHHHHHHHHHh
Q 042902 497 -------------------------------DFKALVLEYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVASALEYLH 542 (599)
Q Consensus 497 -------------------------------~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~lH 542 (599)
...++||||++ |+|.+.+.. ....+++..+..++.||++||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34889999998 587777653 3446899999999999999999999
Q ss_pred cCCCCCeEEccCCCCCeeec-CCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 543 FGYSVPIIHCDLKPNNVLLD-DNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 543 ~~~~~~iiH~dlk~~Nill~-~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.+|+||||||+||+++ .++.+||+|||+|+.+.... ......||+.|+||
T Consensus 159 ---~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~---~~~~~~~t~~y~aP 210 (383)
T 3eb0_A 159 ---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE---PSVAYICSRFYRAP 210 (383)
T ss_dssp ---TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS---CCCCCCCCSSCCCH
T ss_pred ---HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC---CCcCcccCCCccCH
Confidence 89999999999999998 68899999999998764333 22346789999998
No 272
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.94 E-value=3.4e-27 Score=236.00 Aligned_cols=168 Identities=24% Similarity=0.371 Sum_probs=138.4
Q ss_pred hCCCCcCc-eecccccceEEEEEec---CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 427 TNGFSENN-LIGRGGVASVYKARIQ---DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 427 ~~~~~~~~-~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
..+|...+ .||+|+||.||+|.+. +++.||||+++... ....+++.+|+++++.++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 34677777 9999999999999643 46889999997543 23357899999999999999999999999 556789
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+||||+++|+|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 94 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred EEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHHH---hCCeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence 9999999999999998754 4889999999999999999999 88999999999999999999999999999987654
Q ss_pred CCCce-eeecccCCccccCC
Q 042902 581 EDQSL-TQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~-~~~~~~gt~~y~AP 599 (599)
..... ......+|+.|+||
T Consensus 170 ~~~~~~~~~~~~~~~~y~aP 189 (291)
T 1xbb_A 170 DENYYKAQTHGKWPVKWYAP 189 (291)
T ss_dssp TCSEEEC----CCCGGGCCH
T ss_pred CCCcccccccCCCCceeeCh
Confidence 33221 22334567899998
No 273
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=4.4e-26 Score=227.43 Aligned_cols=202 Identities=24% Similarity=0.268 Sum_probs=125.2
Q ss_pred CcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhc
Q 042902 16 IFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGN 95 (599)
Q Consensus 16 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 95 (599)
+.++++++++++++|+++.+.+ .+. ++|++|+|++|+|+.+++. .|.++++|++|+|++|.|+++.+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~----- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYTFSLA-----TLMPYTRLTQLNLDRAELTKLQV----- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSEEEGG-----GGTTCTTCCEEECTTSCCCEEEC-----
T ss_pred ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCccCHH-----HhhcCCCCCEEECCCCccCcccC-----
Confidence 4455666666666666665332 222 4566666666666655443 45666666666666666654322
Q ss_pred ccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEE
Q 042902 96 LSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLL 175 (599)
Q Consensus 96 l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 175 (599)
. ..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|++|
T Consensus 73 --------------------~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 73 --------------------D--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp --------------------C--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred --------------------C--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 1 45566666666666666 344556666666666666666666656666666666667
Q ss_pred EeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCcc-ccCCCcccEEeecCCCccccCcccccccccccEEEccCCccC
Q 042902 176 DLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPST-LWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFS 254 (599)
Q Consensus 176 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 254 (599)
+|++|+++++.+..|..+++|+.|+|++|+|+.+|.. +..+++|+.|+|++|+++ .+|..+..+.+|+.|+|++|++.
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 7766666666666666666777777777777766653 345666777777777776 44555555667777777777665
No 274
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.94 E-value=1.9e-26 Score=236.01 Aligned_cols=169 Identities=28% Similarity=0.437 Sum_probs=142.8
Q ss_pred HHhCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhc--CCCCcceeEEEEEEcCC----e
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKR--IRHRNLIKIISSCSNDD----F 498 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~l~~~~~~~~----~ 498 (599)
...++|...+.||+|+||.||+|++ +|+.||||+++.. ....+..|++++.. ++||||+++++++...+ .
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~ 114 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQ 114 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCC
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccce
Confidence 3456799999999999999999998 4999999998643 34567888888887 78999999999998776 7
Q ss_pred eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCC-----CCCeEEccCCCCCeeecCCCcEEEcccc
Q 042902 499 KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGY-----SVPIIHCDLKPNNVLLDDNMVAHLSDFG 573 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~-----~~~iiH~dlk~~Nill~~~~~~kl~DFG 573 (599)
.++||||+++|+|.+++... .+++..+..++.|+++||.|||... +.+|+||||||+||+++.++.+||+|||
T Consensus 115 ~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg 192 (342)
T 1b6c_B 115 LWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG 192 (342)
T ss_dssp EEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCT
T ss_pred eEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECC
Confidence 89999999999999999765 3889999999999999999999321 4689999999999999999999999999
Q ss_pred CCccCCcCCCce--eeecccCCccccCC
Q 042902 574 MAKPLLKEDQSL--TQTQTLATIGYMAP 599 (599)
Q Consensus 574 la~~~~~~~~~~--~~~~~~gt~~y~AP 599 (599)
+|+......... ......||+.|+||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~gt~~y~aP 220 (342)
T 1b6c_B 193 LAVRHDSATDTIDIAPNHRVGTKRYMAP 220 (342)
T ss_dssp TCEEEETTTTEEEECCCSCCCCGGGCCH
T ss_pred CceeccccccccccccccCCcCcccCCH
Confidence 998654333221 22445799999998
No 275
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=99.94 E-value=3.3e-27 Score=242.11 Aligned_cols=167 Identities=21% Similarity=0.217 Sum_probs=134.4
Q ss_pred CCCCcCceecccccceEEEEEec----CCcEEEEEEecccccc-----------cHHHHHHHHHHHhcCCCCcceeEEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ----DGIEVAVKVFDLQYEG-----------AFKSFDIECDMMKRIRHRNLIKIISS 492 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~e~~~l~~l~h~niv~l~~~ 492 (599)
++|...+.||+|+||.||+|... ++..||||+....... ..+.+..|+..++.++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 56888999999999999999975 5788999998654321 22347788899999999999999999
Q ss_pred EEc----CCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC--c
Q 042902 493 CSN----DDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM--V 566 (599)
Q Consensus 493 ~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~--~ 566 (599)
+.. .+..++||||+ +|+|.+++...+ .+++..+..++.||++||+||| +.+|+||||||+||+++.++ .
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dlkp~NIll~~~~~~~ 191 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYIH---ENEYVHGDIKAANLLLGYKNPDQ 191 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEESSSTTS
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---hCCeeCCCcCHHHEEEccCCCCc
Confidence 987 67899999999 999999987654 5899999999999999999999 88999999999999999877 9
Q ss_pred EEEccccCCccCCcCCCc-----eeeecccCCccccCC
Q 042902 567 AHLSDFGMAKPLLKEDQS-----LTQTQTLATIGYMAP 599 (599)
Q Consensus 567 ~kl~DFGla~~~~~~~~~-----~~~~~~~gt~~y~AP 599 (599)
+||+|||+|+.+...... .......||+.|+||
T Consensus 192 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP 229 (345)
T 2v62_A 192 VYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSL 229 (345)
T ss_dssp EEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCH
T ss_pred EEEEeCCCceecccccccccchhccccccCCCccccCH
Confidence 999999999876433211 111345799999998
No 276
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=99.94 E-value=8.2e-27 Score=240.98 Aligned_cols=167 Identities=26% Similarity=0.325 Sum_probs=142.0
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC-----Cee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~ 499 (599)
.++|+..+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 457999999999999999999875 68899999997543 33457799999999999999999999998654 368
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
++||||++ |+|.+++.... +++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+...
T Consensus 106 ~iv~e~~~-~~L~~~l~~~~--~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 179 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQH--LSNDHICYFLYQILRGLKYIH---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179 (364)
T ss_dssp EEEEECCS-EEHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEcccC-cCHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHH---HCCeecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence 99999997 59999887653 889999999999999999999 8899999999999999999999999999998664
Q ss_pred cCCCce-eeecccCCccccCC
Q 042902 580 KEDQSL-TQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~-~~~~~~gt~~y~AP 599 (599)
...... ......||+.|+||
T Consensus 180 ~~~~~~~~~~~~~gt~~y~aP 200 (364)
T 3qyz_A 180 PDHDHTGFLTEYVATRWYRAP 200 (364)
T ss_dssp GGGCBCCTTCCCCSCGGGCCH
T ss_pred CCCCccccccccccccCCCCC
Confidence 332211 12445799999998
No 277
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=99.94 E-value=6.7e-27 Score=234.68 Aligned_cols=166 Identities=29% Similarity=0.442 Sum_probs=140.5
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 504 (599)
++|+..+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57888999999999999999976 68999999986543 2334678899999999999999999999999999999999
Q ss_pred ccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC
Q 042902 505 YMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ 583 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~ 583 (599)
|++ |+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+++.......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~ 158 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH---SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR 158 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCSB
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCcc
Confidence 997 69999887653 35788899999999999999999 88999999999999999999999999999986532221
Q ss_pred ceeeecccCCccccCC
Q 042902 584 SLTQTQTLATIGYMAP 599 (599)
Q Consensus 584 ~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 159 --~~~~~~~~~~y~aP 172 (299)
T 2r3i_A 159 --TYTHEVVTLWYRAP 172 (299)
T ss_dssp --CTTSCBCCCTTCCH
T ss_pred --ccCcccccccccCc
Confidence 22345689999998
No 278
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=1.6e-27 Score=259.15 Aligned_cols=156 Identities=19% Similarity=0.163 Sum_probs=122.7
Q ss_pred eecccccceEEEEE-ecCCcEEEEEEecccc----------cccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEE
Q 042902 435 LIGRGGVASVYKAR-IQDGIEVAVKVFDLQY----------EGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 435 ~ig~G~~g~Vy~~~-~~~~~~vavK~~~~~~----------~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv 502 (599)
..+.|++|.++.++ ...|+.||||++.... +...++|.+|+++|+++ .|+||+++++++++++..|||
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLV 320 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLV 320 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEE
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEE
Confidence 34566676666654 3358999999996431 23456799999999999 699999999999999999999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||++||+|.+++...+. ++. .+|+.||++||+|+| +.|||||||||+|||++++|.+||+|||+|+......
T Consensus 321 MEyv~G~~L~d~i~~~~~-l~~---~~I~~QIl~AL~ylH---~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~ 393 (569)
T 4azs_A 321 MEKLPGRLLSDMLAAGEE-IDR---EKILGSLLRSLAALE---KQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC 393 (569)
T ss_dssp EECCCSEEHHHHHHTTCC-CCH---HHHHHHHHHHHHHHH---HTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---
T ss_pred EecCCCCcHHHHHHhCCC-CCH---HHHHHHHHHHHHHHH---HCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC
Confidence 999999999999987653 554 358999999999999 9999999999999999999999999999998664332
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......+||++||||
T Consensus 394 --~~~~t~vGTp~YmAP 408 (569)
T 4azs_A 394 --SWPTNLVQSFFVFVN 408 (569)
T ss_dssp --CCSHHHHHHHHHHHH
T ss_pred --ccccCceechhhccH
Confidence 233457899999998
No 279
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=99.94 E-value=1.9e-26 Score=234.93 Aligned_cols=159 Identities=24% Similarity=0.382 Sum_probs=138.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC-CCcceeEEEEEEc--CCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRNLIKIISSCSN--DDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~--~~~~~lv~ 503 (599)
++|+..+.||+|+||.||+|+.. +++.||||+++.. ..+.+.+|++++++++ ||||+++++++.+ ....++||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 56888999999999999999864 6899999998643 3467899999999997 9999999999987 56789999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC-cEEEccccCCccCCcCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM-VAHLSDFGMAKPLLKED 582 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~-~~kl~DFGla~~~~~~~ 582 (599)
||+++++|.+++.. +++..+..++.||++||+||| +.+|+||||||+|||++.++ .+||+|||+|+......
T Consensus 113 e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~ 185 (330)
T 3nsz_A 113 EHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYCH---SMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ 185 (330)
T ss_dssp ECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred eccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCC
Confidence 99999999998854 788889999999999999999 88999999999999999776 89999999998664332
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
. .....||+.|+||
T Consensus 186 ~---~~~~~~~~~y~aP 199 (330)
T 3nsz_A 186 E---YNVRVASRYFKGP 199 (330)
T ss_dssp C---CCSCCSCGGGCCH
T ss_pred c---cccccccccccCh
Confidence 2 2345789999998
No 280
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.94 E-value=5.5e-27 Score=258.59 Aligned_cols=161 Identities=25% Similarity=0.383 Sum_probs=132.4
Q ss_pred ceecccccceEEEEEec---CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEEEccCC
Q 042902 434 NLIGRGGVASVYKARIQ---DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVLEYMPH 508 (599)
Q Consensus 434 ~~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 508 (599)
+.||+|+||.||+|.+. .++.||||+++... ....++|.+|++++++++|||||++++++.. +..++|||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999754 46789999997543 3346789999999999999999999999965 457899999999
Q ss_pred CChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCC-ceee
Q 042902 509 GSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQ-SLTQ 587 (599)
Q Consensus 509 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~-~~~~ 587 (599)
|+|.+++.... .+++..+..|+.||++||+||| +.+|+||||||+|||++.++.+||+|||+|+.+..... ....
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yLH---~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~ 529 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYLE---ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC--------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHH---HCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccc
Confidence 99999997654 4889999999999999999999 88999999999999999999999999999987654332 1223
Q ss_pred ecccCCccccCC
Q 042902 588 TQTLATIGYMAP 599 (599)
Q Consensus 588 ~~~~gt~~y~AP 599 (599)
....+|+.||||
T Consensus 530 ~~~~~t~~y~AP 541 (635)
T 4fl3_A 530 THGKWPVKWYAP 541 (635)
T ss_dssp -----CGGGSCH
T ss_pred cCCCCceeeeCh
Confidence 445678899998
No 281
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.94 E-value=6e-27 Score=237.77 Aligned_cols=165 Identities=27% Similarity=0.364 Sum_probs=137.0
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--------cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--------EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD 497 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~ 497 (599)
.++|...+.||+|+||.||+|... +++.||||++.... ......+.+|++++++++||||+++++++...+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 88 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED 88 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence 356889999999999999999875 58999999986432 122345889999999999999999999987665
Q ss_pred eeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc---EEEccccC
Q 042902 498 FKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV---AHLSDFGM 574 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~---~kl~DFGl 574 (599)
.++||||+++|+|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.++. +||+|||+
T Consensus 89 -~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~ 163 (322)
T 2ycf_A 89 -YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEEDCLIKITDFGH 163 (322)
T ss_dssp -EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSSSCCEEECCCTT
T ss_pred -eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCCHHHEEEecCCCCCeEEEccCcc
Confidence 899999999999999887544 5889999999999999999999 889999999999999987654 99999999
Q ss_pred CccCCcCCCceeeecccCCccccCC
Q 042902 575 AKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 575 a~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++...... ......||+.|+||
T Consensus 164 ~~~~~~~~---~~~~~~gt~~y~aP 185 (322)
T 2ycf_A 164 SKILGETS---LMRTLCGTPTYLAP 185 (322)
T ss_dssp CEECCCCH---HHHHHHSCCTTCCH
T ss_pred ceeccccc---ccccccCCcCccCc
Confidence 98653221 12345689999998
No 282
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=235.15 Aligned_cols=167 Identities=25% Similarity=0.361 Sum_probs=134.5
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEE-----------
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCS----------- 494 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~----------- 494 (599)
.++|...+.||+|+||.||+|... +|+.||||++........+++.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 357888999999999999999976 48999999997666666788999999999999999999999874
Q ss_pred ---cCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec-CCCcEEEc
Q 042902 495 ---NDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD-DNMVAHLS 570 (599)
Q Consensus 495 ---~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~-~~~~~kl~ 570 (599)
+.+..++||||++ |+|.+++... .+++..+..++.|+++||+||| +.+|+||||||+||+++ +++.+||+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYIH---SANVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHHH---HTTCBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHHH---hCCEecCCCCHHHEEEcCCCCeEEEc
Confidence 3467899999997 6999998653 4788899999999999999999 88999999999999997 56799999
Q ss_pred cccCCccCCcCCC-ceeeecccCCccccCC
Q 042902 571 DFGMAKPLLKEDQ-SLTQTQTLATIGYMAP 599 (599)
Q Consensus 571 DFGla~~~~~~~~-~~~~~~~~gt~~y~AP 599 (599)
|||+++....... ........+|+.|+||
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aP 193 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSP 193 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCH
T ss_pred cCccccccCCCcccccccccccccccccCc
Confidence 9999986543211 1122345679999998
No 283
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=99.94 E-value=1.5e-26 Score=235.40 Aligned_cols=167 Identities=23% Similarity=0.326 Sum_probs=139.6
Q ss_pred hCCCCcC-ceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCC-CCcceeEEEEEEcCCeeeE
Q 042902 427 TNGFSEN-NLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~l 501 (599)
.+.|... +.||+|+||.||+|... +|+.||||++.... ......+.+|+.++..+. ||||+++++++.+.+..++
T Consensus 27 ~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~l 106 (327)
T 3lm5_A 27 NNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIIL 106 (327)
T ss_dssp HHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEE
Confidence 3456665 78999999999999876 68999999987543 334678999999999995 6999999999999999999
Q ss_pred EEEccCCCChhhhhhcC-CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC---CCcEEEccccCCcc
Q 042902 502 VLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD---NMVAHLSDFGMAKP 577 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~---~~~~kl~DFGla~~ 577 (599)
||||+++|+|.+++... ...+++..+..++.|++.||+||| +.+|+||||||+||+++. ++.+||+|||+|+.
T Consensus 107 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH---~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~ 183 (327)
T 3lm5_A 107 ILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRK 183 (327)
T ss_dssp EEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEE
T ss_pred EEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH---HCCeecCcCChHHEEEecCCCCCcEEEeeCccccc
Confidence 99999999999998653 346899999999999999999999 889999999999999987 78999999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... ......||+.|+||
T Consensus 184 ~~~~~---~~~~~~gt~~y~aP 202 (327)
T 3lm5_A 184 IGHAC---ELREIMGTPEYLAP 202 (327)
T ss_dssp C------------CCCGGGCCH
T ss_pred cCCcc---ccccccCCcCccCC
Confidence 64322 22346799999998
No 284
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.4e-27 Score=239.94 Aligned_cols=170 Identities=29% Similarity=0.375 Sum_probs=140.1
Q ss_pred HHHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEc------
Q 042902 424 FQATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSN------ 495 (599)
Q Consensus 424 ~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~------ 495 (599)
....++|...+.||+|+||.||+|++. +|+.||||++.... ...+.+..|+.+++++ +||||+++++++..
T Consensus 20 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~ 98 (326)
T 2x7f_A 20 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGM 98 (326)
T ss_dssp CCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--CC
T ss_pred cCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCccc
Confidence 345678999999999999999999974 68999999986543 2347889999999999 79999999999976
Q ss_pred CCeeeEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccC
Q 042902 496 DDFKALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGM 574 (599)
Q Consensus 496 ~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGl 574 (599)
.+..++||||+++|+|.+++.... ..+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+
T Consensus 99 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~ 175 (326)
T 2x7f_A 99 DDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLH---QHKVIHRDIKGQNVLLTENAEVKLVDFGV 175 (326)
T ss_dssp CCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEECTTCCEEECCCTT
T ss_pred cceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCcHHHEEEcCCCCEEEeeCcC
Confidence 467899999999999999997643 35888899999999999999999 88999999999999999999999999999
Q ss_pred CccCCcCCCceeeecccCCccccCC
Q 042902 575 AKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 575 a~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++...... .......||+.|+||
T Consensus 176 ~~~~~~~~--~~~~~~~~~~~y~aP 198 (326)
T 2x7f_A 176 SAQLDRTV--GRRNTFIGTPYWMAP 198 (326)
T ss_dssp TC---------------CCGGGCCH
T ss_pred ceecCcCc--cccccccCCccccCh
Confidence 98653221 122345789999998
No 285
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=99.94 E-value=6.7e-27 Score=233.65 Aligned_cols=168 Identities=26% Similarity=0.372 Sum_probs=133.2
Q ss_pred CCCCcCceecccccceEEEEEec--CCc--EEEEEEeccc---ccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ--DGI--EVAVKVFDLQ---YEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~--~~~--~vavK~~~~~---~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 500 (599)
++|+..+.||+|+||.||+|++. +++ .||||+++.. .....+.+.+|++++++++||||+++++++.+.+ .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 46888899999999999999864 233 6999998654 2345678999999999999999999999998765 88
Q ss_pred EEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~ 580 (599)
+||||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+||+++.++.+||+|||+++....
T Consensus 97 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 173 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLE---SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQ 173 (291)
T ss_dssp EEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC
T ss_pred eeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHH---hCCcccCCCchheEEEcCCCCEEEccccccccccc
Confidence 999999999999999876566899999999999999999999 88999999999999999999999999999987654
Q ss_pred CCCce-eeecccCCccccCC
Q 042902 581 EDQSL-TQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~-~~~~~~gt~~y~AP 599 (599)
..... ......+|+.|+||
T Consensus 174 ~~~~~~~~~~~~~~~~y~aP 193 (291)
T 1u46_A 174 NDDHYVMQEHRKVPFAWCAP 193 (291)
T ss_dssp -CCEEEC-----CCGGGCCH
T ss_pred cccchhhhccCCCCceeeCc
Confidence 33221 22345678899998
No 286
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=99.94 E-value=6.7e-27 Score=233.52 Aligned_cols=166 Identities=23% Similarity=0.254 Sum_probs=128.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc--ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE--GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|+..+.||+|+||.||+|+.. +|+.||||+++.... ...+.+..+...++.++||||+++++++.+++..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 357888999999999999999974 789999999965422 22334555556688899999999999999999999999
Q ss_pred EccCCCChhhhhhc---CCCcCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 504 EYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVASALEYLHFGYSV-PIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 504 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~-~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
||++ |+|.+++.. ....+++..+..++.|++.||.||| +. +|+||||||+||+++.++.+||+|||+|+...
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 9997 588777653 3456899999999999999999999 76 99999999999999999999999999998654
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
... ......||+.|+||
T Consensus 162 ~~~---~~~~~~~t~~y~aP 178 (290)
T 3fme_A 162 DDV---AKDIDAGCKPYMAP 178 (290)
T ss_dssp -----------CCCCCCSCH
T ss_pred ccc---cccccCCCccccCh
Confidence 322 22334799999998
No 287
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=99.94 E-value=5.1e-27 Score=242.38 Aligned_cols=162 Identities=27% Similarity=0.366 Sum_probs=123.2
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC------C
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSND------D 497 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~------~ 497 (599)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 467999999999999999999864 68999999986532 33456788999999999999999999998654 5
Q ss_pred eeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 498 FKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
..++||||+ +++|.+++... .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~i~~qi~~aL~~LH---~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~ 181 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ--KLTDDHVQFLIYQILRGLKYIH---SADIIHRDLKPSNLAVNEDCELKILDFGLARH 181 (367)
T ss_dssp CCEEEEECC-CEECC-----C--CCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred eEEEEeccc-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH---HCCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence 679999999 78999988763 4889999999999999999999 88999999999999999999999999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.... .....||+.|+||
T Consensus 182 ~~~~-----~~~~~~t~~y~aP 198 (367)
T 2fst_X 182 TADE-----MTGYVATRWYRAP 198 (367)
T ss_dssp --------------CCCTTCCH
T ss_pred cccc-----CCCcCcCcCccCh
Confidence 4321 2446799999998
No 288
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=99.94 E-value=6.9e-27 Score=239.22 Aligned_cols=166 Identities=25% Similarity=0.319 Sum_probs=138.9
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHH-HhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDM-MKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~-l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|...+.||+|+||.||+|+.. +|+.||||+++... .....++..|..+ ++.++||||+++++++.+.+..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 457888899999999999999964 79999999997543 2334556666655 78889999999999999999999999
Q ss_pred EccCCCChhhhhhc---CCCcCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 504 EYMPHGSLEKCLYS---SNYILDIFQRLNIMIDVASALEYLHFGYSV-PIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 504 e~~~~g~L~~~l~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~-~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
||+++ +|.+++.. ....+++..+..++.||++||.||| +. +|+||||||+||+++.++.+||+|||+|+.+.
T Consensus 130 e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH---~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 130 ELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLH---SKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp CCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHH---HHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred HHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHh---hcCCeecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 99975 99888764 4456899999999999999999999 75 99999999999999999999999999998653
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
.. .......||+.|+||
T Consensus 206 ~~---~~~~~~~gt~~y~aP 222 (340)
T 3an0_A 206 DS---VAKTIDAGCKPYMAP 222 (340)
T ss_dssp CH---HHHHHSSCCCCCCCH
T ss_pred cc---cccccCCCCccccCc
Confidence 22 122335799999998
No 289
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.94 E-value=2.6e-27 Score=235.17 Aligned_cols=168 Identities=26% Similarity=0.392 Sum_probs=140.3
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEE--cCCeeeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCS--NDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~--~~~~~~l 501 (599)
.++|+..+.||+|+||.||+|+.. +|+.||+|.+.... ....+.+.+|++++++++||||+++++++. ..+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 357888999999999999999976 68999999997542 334567999999999999999999999875 3568899
Q ss_pred EEEccCCCChhhhhhcC---CCcCCHHHHHHHHHHHHHHHHHHhcCCCCC-----eEEccCCCCCeeecCCCcEEEcccc
Q 042902 502 VLEYMPHGSLEKCLYSS---NYILDIFQRLNIMIDVASALEYLHFGYSVP-----IIHCDLKPNNVLLDDNMVAHLSDFG 573 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~-----iiH~dlk~~Nill~~~~~~kl~DFG 573 (599)
||||+++|+|.+++... ...+++..+..++.|+++||.||| +.+ |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECH---RRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---HHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHh---cccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 99999999999998753 234889999999999999999999 666 9999999999999999999999999
Q ss_pred CCccCCcCCCceeeecccCCccccCC
Q 042902 574 MAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 574 la~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+++....... ......||+.|+||
T Consensus 162 ~~~~~~~~~~--~~~~~~~~~~y~aP 185 (279)
T 2w5a_A 162 LARILNHDTS--FAKTFVGTPYYMSP 185 (279)
T ss_dssp HHHHC---CH--HHHHHHSCCTTCCH
T ss_pred hheeeccccc--cccccCCCccccCh
Confidence 9986543221 12345689999998
No 290
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=237.00 Aligned_cols=168 Identities=27% Similarity=0.311 Sum_probs=130.7
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC-CCcceeEEEEEE--------cCC
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRNLIKIISSCS--------NDD 497 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~--------~~~ 497 (599)
.+|...+.||+|+||.||+|++. +|+.||||++........+.+.+|+.++.++. ||||+++++++. ...
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~ 107 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA 107 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence 46888899999999999999975 68999999987665556678999999999996 999999999984 233
Q ss_pred eeeEEEEccCCCChhhhhhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCCCCC--eEEccCCCCCeeecCCCcEEEcccc
Q 042902 498 FKALVLEYMPHGSLEKCLYS--SNYILDIFQRLNIMIDVASALEYLHFGYSVP--IIHCDLKPNNVLLDDNMVAHLSDFG 573 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~--iiH~dlk~~Nill~~~~~~kl~DFG 573 (599)
..++||||++ |+|.+++.. ....+++..+..++.||+.||.||| +.+ |+||||||+||+++.++.+||+|||
T Consensus 108 ~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg 183 (337)
T 3ll6_A 108 EFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMH---RQKPPIIHRDLKVENLLLSNQGTIKLCDFG 183 (337)
T ss_dssp EEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHH---TSSSCCBCCCCCGGGCEECTTSCEEBCCCT
T ss_pred eEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---hCCCCEEEccCCcccEEECCCCCEEEecCc
Confidence 5799999995 799888864 3345899999999999999999999 777 9999999999999999999999999
Q ss_pred CCccCCcCCCce----------eeecccCCccccCC
Q 042902 574 MAKPLLKEDQSL----------TQTQTLATIGYMAP 599 (599)
Q Consensus 574 la~~~~~~~~~~----------~~~~~~gt~~y~AP 599 (599)
+++......... ......||+.|+||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aP 219 (337)
T 3ll6_A 184 SATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTP 219 (337)
T ss_dssp TCBCCSSCC---------------------------
T ss_pred cceeccccCcccccccccccchhhccccCCCCcCCh
Confidence 998764322111 11245689999998
No 291
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=99.94 E-value=1.3e-26 Score=239.95 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=130.5
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC------
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------ 497 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------ 497 (599)
.++|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|+.+++.++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 357889999999999999999865 68999999996532 334567899999999999999999999997665
Q ss_pred eeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 498 FKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 498 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
..++||||+++ +|.+.+.. .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 104 ~~~lv~e~~~~-~l~~~~~~---~~~~~~~~~i~~qi~~al~~lH---~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHLH---SAGIIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCSE-EHHHHHHS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCCC-CHHHHHhh---ccCHHHHHHHHHHHHHHHHHHH---HCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 78999999975 78887753 3788899999999999999999 88999999999999999999999999999986
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.... .......||+.|+||
T Consensus 177 ~~~~---~~~~~~~gt~~y~aP 195 (371)
T 2xrw_A 177 AGTS---FMMTPYVVTRYYRAP 195 (371)
T ss_dssp ----------------CTTCCH
T ss_pred cccc---cccCCceecCCccCH
Confidence 5322 123456799999998
No 292
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.94 E-value=1e-26 Score=259.70 Aligned_cols=159 Identities=24% Similarity=0.371 Sum_probs=136.6
Q ss_pred CCCCcCceecccccceEEEEEec--CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe-----e
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ--DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF-----K 499 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~--~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~-----~ 499 (599)
++|...+.||+|+||.||+|.+. +|+.||||++.... ....+.|..|++++++++|||||++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 67999999999999999999975 58999999986443 3345678999999999999999999999987655 6
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
|+||||++|++|.+++.. .+++..+..|+.||++||.|+| +.+|+||||||+|||++.+ .+||+|||+++...
T Consensus 160 ~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~lH---~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~ 232 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRIN 232 (681)
T ss_dssp EEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEECSS-CEEECCCTTCEETT
T ss_pred EEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHHH---HCCCeecccChHHeEEeCC-cEEEEecccchhcc
Confidence 999999999999987755 4899999999999999999999 8899999999999999986 99999999998653
Q ss_pred cCCCceeeecccCCccccCC
Q 042902 580 KEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~~~~~~~gt~~y~AP 599 (599)
.. ....||++||||
T Consensus 233 ~~------~~~~gt~~y~aP 246 (681)
T 2pzi_A 233 SF------GYLYGTPGFQAP 246 (681)
T ss_dssp CC------SCCCCCTTTSCT
T ss_pred cC------CccCCCccccCH
Confidence 32 345799999999
No 293
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=4.2e-26 Score=221.18 Aligned_cols=195 Identities=22% Similarity=0.238 Sum_probs=104.1
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCcc-CcccCCCcccccccCCCCCCcEEEccc-CcccccCChhhhcccc
Q 042902 21 KLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNY-LTSSTPKLNFLSSLSNCKYLKYLSFSN-NSLDGILPRAIGNLSQ 98 (599)
Q Consensus 21 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~ 98 (599)
+|++|+|++|+|+++.+.+|.++++|++|+|++|+ ++.+++. .|.++++|++|++++ |+|+++.+.+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-----~f~~l~~L~~L~l~~~n~l~~i~~~~------ 100 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-----SFYNLSKVTHIEIRNTRNLTYIDPDA------ 100 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-----TEESCTTCCEEEEEEETTCCEECTTS------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-----HcCCCcCCcEEECCCCCCeeEcCHHH------
Confidence 56666666666666666566666666666666665 6655543 356666666666666 6665544444
Q ss_pred cceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCC---EEEcccc-cccccCChhhhcCCCCc-
Q 042902 99 SMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQ---LLSLEDN-QLEGSIPDDLCRLAALF- 173 (599)
Q Consensus 99 ~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~l~~L~- 173 (599)
|.++++|++|+|++|.+++ +|. |..+++|+ +|++++| .++++.+..|..+++|+
T Consensus 101 -------------------f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 101 -------------------LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp -------------------EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred -------------------hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 4444555555555555543 222 44444444 5555555 55544444455555555
Q ss_pred EEEeeCCccCCCCCcccCCCCCCcEeecCCCC-CCCCCc-cccCC-CcccEEeecCCCccccCcccccccccccEEEccC
Q 042902 174 LLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQ-LTSIPS-TLWNL-KYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSM 250 (599)
Q Consensus 174 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~ip~-~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 250 (599)
.|++++|+++.+.+..|.. ++|++|++++|+ ++.+|. .+..+ ++|+.|++++|++++..+. .+++|+.|++++
T Consensus 160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 5555555555444444443 455555555553 555533 34444 5555555555555533322 344555555554
Q ss_pred C
Q 042902 251 N 251 (599)
Q Consensus 251 N 251 (599)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 294
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=99.94 E-value=1.6e-26 Score=237.73 Aligned_cols=167 Identities=25% Similarity=0.331 Sum_probs=139.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcC-----Cee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-----~~~ 499 (599)
.++|...+.||+|+||.||+|+.. +|+.||||++.... .....++.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 467889999999999999999976 68999999996443 33456788999999999999999999988754 678
Q ss_pred eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCC
Q 042902 500 ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
++||||++ |+|.+++... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+|+.+.
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~LH---~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVLH---GSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 99999997 6999988764 4889999999999999999999 8899999999999999999999999999998664
Q ss_pred cCCCce--------eeecccCCccccCC
Q 042902 580 KEDQSL--------TQTQTLATIGYMAP 599 (599)
Q Consensus 580 ~~~~~~--------~~~~~~gt~~y~AP 599 (599)
...... ......||+.|+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aP 191 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAP 191 (353)
T ss_dssp ----------------CCCCCCGGGCCH
T ss_pred cccccccCccccccchhhccccccccCC
Confidence 322111 12235789999998
No 295
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.94 E-value=1.2e-26 Score=256.94 Aligned_cols=168 Identities=23% Similarity=0.357 Sum_probs=139.2
Q ss_pred hCCCCcCceecccccceEEEEEec----CCcEEEEEEecccc-cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ----DGIEVAVKVFDLQY-EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~l 501 (599)
.++|...+.||+|+||.||+|.+. .+..||||.++... ....+.|.+|+.++++++||||+++++++. ++..++
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~l 467 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWI 467 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEE
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEE
Confidence 356777889999999999999874 25679999986543 334578999999999999999999999985 456899
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||||+++|+|.+++......+++..+..++.|+++||.||| +.+|+||||||+|||++.++.+||+|||+|+.....
T Consensus 468 v~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~ 544 (656)
T 2j0j_A 468 IMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS 544 (656)
T ss_dssp EEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC-
T ss_pred EEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHH---hCCccccccchHhEEEeCCCCEEEEecCCCeecCCC
Confidence 99999999999999877667899999999999999999999 889999999999999999999999999999876433
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
. ........+|+.||||
T Consensus 545 ~-~~~~~~~~~t~~y~aP 561 (656)
T 2j0j_A 545 T-YYKASKGKLPIKWMAP 561 (656)
T ss_dssp ----------CCGGGCCH
T ss_pred c-ceeccCCCCCcceeCH
Confidence 2 2223345678899998
No 296
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=3.1e-26 Score=222.12 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=123.6
Q ss_pred CCCEEEccCCcCCcccCccccCCCCCCEEEccccc-ccccCChhhhcCCCCcEEEeeC-CccCCCCCcccCCCCCCcEee
Q 042902 123 NLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQ-LEGSIPDDLCRLAALFLLDLGG-NKLSGFVPACFGNLTSLRNLY 200 (599)
Q Consensus 123 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~ 200 (599)
+|++|+|++|+++++.+.+|.++++|++|++++|. ++.+.+..|..+++|++|++++ |+++++.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55666666666665555556666666666666664 5555555566666666666665 666655555666666666666
Q ss_pred cCCCCCCCCCccccCCCccc---EEeecCC-CccccCccccccccccc-EEEccCCccCCCCCccccCcccccccccccc
Q 042902 201 LGSNQLTSIPSTLWNLKYIL---YLNLSSN-SFTGPLPLEIGNLRVLV-QIDLSMNNFSGFIPTTIGDLKDLQYLFLEYN 275 (599)
Q Consensus 201 L~~N~l~~ip~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 275 (599)
+++|.++.+|. +..+++|+ +|++++| .+++..+..|.++++|+ .|++++|.++.+.+..|.. ++|++|+|++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 66666666655 55555555 6777776 66666666667777777 7777777776444444444 67777777777
Q ss_pred c-ccccCcccccCC-CCcccccCCCCcccccCCchhhccccceEEEcccc
Q 042902 276 R-LQGSIPDSIGGL-IDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFN 323 (599)
Q Consensus 276 ~-l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N 323 (599)
+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 4 776666667777 7777777777777743333 4556667776655
No 297
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.93 E-value=6.5e-27 Score=232.28 Aligned_cols=162 Identities=30% Similarity=0.442 Sum_probs=132.6
Q ss_pred hCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcC-CeeeEEEEc
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSND-DFKALVLEY 505 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 505 (599)
.++|+..+.||+|+||.||+|+.. |+.||||+++.. ...+.+.+|++++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 356888899999999999999875 899999998644 3457899999999999999999999997654 478999999
Q ss_pred cCCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCCCc
Q 042902 506 MPHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQS 584 (599)
Q Consensus 506 ~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~ 584 (599)
+++|+|.+++..... .+++..+..++.|+++||+||| +.+|+||||||+||+++.++.+||+|||+++.....
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~--- 170 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE---GNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--- 170 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHH---hCCccccCCCcceEEEeCCCcEEEeecccccccccc---
Confidence 999999999876432 3788889999999999999999 889999999999999999999999999999854322
Q ss_pred eeeecccCCccccCC
Q 042902 585 LTQTQTLATIGYMAP 599 (599)
Q Consensus 585 ~~~~~~~gt~~y~AP 599 (599)
.....+++.|+||
T Consensus 171 --~~~~~~~~~y~aP 183 (278)
T 1byg_A 171 --QDTGKLPVKWTAP 183 (278)
T ss_dssp -------CCTTTSCH
T ss_pred --ccCCCccccccCH
Confidence 1234578899998
No 298
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.93 E-value=2.4e-26 Score=230.13 Aligned_cols=168 Identities=25% Similarity=0.372 Sum_probs=137.9
Q ss_pred HhCCCCcCceecccccceEEEEEe-cCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEE-EcCCeeeEEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSC-SNDDFKALVL 503 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~ 503 (599)
..++|+..+.||+|+||.||+|+. .+++.||||++..... ..++..|+++++.++|++++..++++ ...+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence 457899999999999999999996 4789999998754432 23578899999999988877777665 5677889999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee---cCCCcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---DDNMVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---~~~~~~kl~DFGla~~~~~ 580 (599)
||+ +|+|.+++......+++..+..++.||++||.||| +.+|+||||||+||++ +.++.+||+|||+|+....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH---~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~ 160 (296)
T 4hgt_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccC
Confidence 999 99999999866667899999999999999999999 8899999999999999 7889999999999987654
Q ss_pred CCCc-----eeeecccCCccccCC
Q 042902 581 EDQS-----LTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~-----~~~~~~~gt~~y~AP 599 (599)
.... .......||+.|+||
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aP 184 (296)
T 4hgt_A 161 ARTHQHIPYRENKNLTGTARYASI 184 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCGGGCCH
T ss_pred cccCccCCCCcccccCCCccccch
Confidence 3221 122356799999998
No 299
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.3e-27 Score=241.95 Aligned_cols=163 Identities=17% Similarity=0.256 Sum_probs=137.7
Q ss_pred CCCCcCceecccccceEEEEEecC---------CcEEEEEEecccccccHHHHHHHHHHHhcCCCCccee----------
Q 042902 428 NGFSENNLIGRGGVASVYKARIQD---------GIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIK---------- 488 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~---------- 488 (599)
++|...+.||+|+||.||+|+... ++.||||++... +.+.+|++++++++||||++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 578899999999999999998763 789999998643 46788999999999999998
Q ss_pred -----EEEEEEc-CCeeeEEEEccCCCChhhhhhcC-CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee
Q 042902 489 -----IISSCSN-DDFKALVLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL 561 (599)
Q Consensus 489 -----l~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill 561 (599)
+++++.. ++..++||||+ +|+|.+++... ...+++..+..++.||++||.||| +.+|+||||||+||++
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dikp~NIl~ 192 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLH---ENEYVHGNVTAENIFV 192 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHH---HTTCBCSCCCGGGEEE
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHH---hCCccCCCCCHHHEEE
Confidence 6777765 67899999999 99999999865 346899999999999999999999 8899999999999999
Q ss_pred cCCC--cEEEccccCCccCCcCCCce-----eeecccCCccccCC
Q 042902 562 DDNM--VAHLSDFGMAKPLLKEDQSL-----TQTQTLATIGYMAP 599 (599)
Q Consensus 562 ~~~~--~~kl~DFGla~~~~~~~~~~-----~~~~~~gt~~y~AP 599 (599)
+.++ .+||+|||+|+.+....... ......||+.|+||
T Consensus 193 ~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aP 237 (352)
T 2jii_A 193 DPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISM 237 (352)
T ss_dssp ETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCH
T ss_pred cCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCH
Confidence 9998 99999999998765332211 12345799999998
No 300
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.93 E-value=3.7e-27 Score=238.29 Aligned_cols=168 Identities=24% Similarity=0.405 Sum_probs=138.0
Q ss_pred HhCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCC--CCcceeEEEEEEcCCeeeE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIR--HRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~l 501 (599)
..++|...+.||+|+||.||+|...+++.||||++.... ....+.+.+|++++.+++ ||||+++++++...+..++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 456788999999999999999999889999999996543 334578999999999997 5999999999999999999
Q ss_pred EEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcC
Q 042902 502 VLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 502 v~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~ 581 (599)
||| +.+|+|.+++.... .+++..+..++.|+++||.||| +.+|+||||||+||++++ +.+||+|||+++.+...
T Consensus 106 v~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~~ 179 (313)
T 3cek_A 106 VME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTIH---QHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQPD 179 (313)
T ss_dssp EEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEEET-TEEEECCCSSSCC----
T ss_pred EEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCceecCCCcccEEEEC-CeEEEeeccccccccCc
Confidence 999 55889999998754 4788899999999999999999 889999999999999965 89999999999876543
Q ss_pred CCceeeecccCCccccCC
Q 042902 582 DQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~~~~~~~~gt~~y~AP 599 (599)
..........||+.|+||
T Consensus 180 ~~~~~~~~~~gt~~y~aP 197 (313)
T 3cek_A 180 TTSVVKDSQVGTVNYMPP 197 (313)
T ss_dssp ----------CCGGGCCH
T ss_pred cccccccCCCCCCCcCCH
Confidence 332233456799999998
No 301
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=1.2e-27 Score=246.86 Aligned_cols=255 Identities=20% Similarity=0.224 Sum_probs=138.5
Q ss_pred ccCCCcCccCCCCCCcCCCCCCEEEccCccccccCC----ccccCCC-CCCEEeccCccCcccCCCcccccccCCC----
Q 042902 2 LLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIP----NTFGNLR-NLKRLSLNYNYLTSSTPKLNFLSSLSNC---- 72 (599)
Q Consensus 2 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~~~l---- 72 (599)
+|++|++++.+|..+...++|++|+|++|+|++..+ .+|.+++ +|++|+|++|+|+...+. .+..+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-----~l~~~l~~~ 78 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-----ELVQILAAI 78 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-----HHHHHHHTS
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-----HHHHHHhcc
Confidence 567777777777766666668888888887777666 6677777 777777777777765443 23332
Q ss_pred -CCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCC-CCCCEEEccCCcCCcccCccc----cC-C
Q 042902 73 -KYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNL-TNLTTIYLGGNKLNGSIPIAL----DK-L 145 (599)
Q Consensus 73 -~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~----~~-l 145 (599)
++|++|+|++|.|++..+..+... +..+ ++|++|+|++|.+++..+..+ .. .
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~---------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 137 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKT---------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHH---------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSC
T ss_pred CCCccEEECcCCcCChHHHHHHHHH---------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCC
Confidence 677777777777776655544332 1222 445555555555544333222 12 1
Q ss_pred CCCCEEEcccccccccCCh----hhhcCC-CCcEEEeeCCccCCCCCcccC----CC-CCCcEeecCCCCCCC-----CC
Q 042902 146 QKLQLLSLEDNQLEGSIPD----DLCRLA-ALFLLDLGGNKLSGFVPACFG----NL-TSLRNLYLGSNQLTS-----IP 210 (599)
Q Consensus 146 ~~L~~L~L~~N~l~~~~~~----~~~~l~-~L~~L~Ls~N~l~~~~~~~~~----~l-~~L~~L~L~~N~l~~-----ip 210 (599)
++|++|+|++|.+++..+. .+..++ +|++|+|++|++++..+..+. .. ++|++|+|++|.|+. ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 3555555555555432222 223333 555555555555544433222 22 355555555555554 33
Q ss_pred ccccC-CCcccEEeecCCCccccCc----ccccccccccEEEccCCccCCCC-------CccccCccccccccccccccc
Q 042902 211 STLWN-LKYILYLNLSSNSFTGPLP----LEIGNLRVLVQIDLSMNNFSGFI-------PTTIGDLKDLQYLFLEYNRLQ 278 (599)
Q Consensus 211 ~~~~~-l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~ 278 (599)
..+.. .++|++|+|++|.+++..+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.|++++|++.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 33333 2355566666665554433 22344555666666666543322 224455566666666666665
Q ss_pred ccCc
Q 042902 279 GSIP 282 (599)
Q Consensus 279 ~~~~ 282 (599)
+..+
T Consensus 298 ~~~~ 301 (362)
T 3goz_A 298 PSHS 301 (362)
T ss_dssp GGGC
T ss_pred Ccch
Confidence 4433
No 302
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=99.93 E-value=1.1e-26 Score=240.70 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=121.4
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc---ccHHHHHHHHHHHhcC--CCCcceeEE-------EEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE---GAFKSFDIECDMMKRI--RHRNLIKII-------SSCS 494 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l--~h~niv~l~-------~~~~ 494 (599)
..|...+.||+|+||.||+|++. +|+.||||++..... ...+.+.+|+++++.+ +||||++++ +++.
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~ 141 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA 141 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence 45888899999999999999975 789999999976532 3455677885444444 699988865 4443
Q ss_pred cC-----------------CeeeEEEEccCCCChhhhhhcCCCcCCHHHH------HHHHHHHHHHHHHHhcCCCCCeEE
Q 042902 495 ND-----------------DFKALVLEYMPHGSLEKCLYSSNYILDIFQR------LNIMIDVASALEYLHFGYSVPIIH 551 (599)
Q Consensus 495 ~~-----------------~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~------~~i~~~i~~~l~~lH~~~~~~iiH 551 (599)
.. ...++|||||+ |+|.+++...+..+++..+ ..++.||++||+||| +.+|+|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH---~~~ivH 217 (371)
T 3q60_A 142 VQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQ---SKGLVH 217 (371)
T ss_dssp ETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHH---HTTEEE
T ss_pred cCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHH---HCCCcc
Confidence 32 23799999998 8999999865444455555 678899999999999 889999
Q ss_pred ccCCCCCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 552 CDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 552 ~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|||||+|||++.++.+||+|||+|+.... ......+|+.||||
T Consensus 218 rDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~~t~~y~aP 260 (371)
T 3q60_A 218 GHFTPDNLFIMPDGRLMLGDVSALWKVGT-----RGPASSVPVTYAPR 260 (371)
T ss_dssp TTCSGGGEEECTTSCEEECCGGGEEETTC-----EEEGGGSCGGGCCH
T ss_pred CcCCHHHEEECCCCCEEEEecceeeecCC-----CccCccCCcCCcCh
Confidence 99999999999999999999999986531 12245677999998
No 303
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.93 E-value=4.2e-26 Score=228.47 Aligned_cols=167 Identities=25% Similarity=0.374 Sum_probs=140.8
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEE-EcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSC-SNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e 504 (599)
.++|+..+.||+|+||.||+|+. .+|+.||||++..... .+++..|+++++.++|++++..++++ ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 46789999999999999999996 4799999999865432 24688999999999998877766655 56678899999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee---cCCCcEEEccccCCccCCcC
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---DDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---~~~~~~kl~DFGla~~~~~~ 581 (599)
|+ +|+|.+++......+++..+..++.||++||+||| +.+|+||||||+||++ +.++.+||+|||+|+.....
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~ 161 (296)
T 3uzp_A 86 LL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDA 161 (296)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred ec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---hCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccc
Confidence 99 99999999866667899999999999999999999 8899999999999999 48889999999999876543
Q ss_pred CCc-----eeeecccCCccccCC
Q 042902 582 DQS-----LTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~-----~~~~~~~gt~~y~AP 599 (599)
... .......||+.|+||
T Consensus 162 ~~~~~~~~~~~~~~~gt~~y~aP 184 (296)
T 3uzp_A 162 RTHQHIPYRENKNLTGTARYASI 184 (296)
T ss_dssp TTCCBCCCCCSCCCCSCTTTCCH
T ss_pred ccccccccccccccccccccCCh
Confidence 221 112456799999998
No 304
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=99.93 E-value=3.4e-26 Score=240.67 Aligned_cols=161 Identities=29% Similarity=0.486 Sum_probs=131.4
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcC----C--eee
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSND----D--FKA 500 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~----~--~~~ 500 (599)
.+|+..+.||+|+||.||+|++. +|+.||||++..... .+.+|++++++++|||||++++++... + +.+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 35888899999999999999986 599999999864322 234699999999999999999988532 2 467
Q ss_pred EEEEccCCCChhhhhh---cCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC-CcEEEccccCCc
Q 042902 501 LVLEYMPHGSLEKCLY---SSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN-MVAHLSDFGMAK 576 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~-~~~kl~DFGla~ 576 (599)
+||||+++ ++.+.+. .....+++..+..++.||++||.||| +.+|+||||||+|||++.+ +.+||+|||+|+
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~ 205 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAK 205 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECSCCSGGGEEEETTTTEEEECCCTTCE
T ss_pred eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH---HCCccccCCChhhEEEeCCCCeEEeccchhhh
Confidence 99999976 6665543 23446899999999999999999999 8999999999999999955 678999999998
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.+..... .....||+.||||
T Consensus 206 ~~~~~~~---~~~~~~t~~y~aP 225 (420)
T 1j1b_A 206 QLVRGEP---NVSYICSRYYRAP 225 (420)
T ss_dssp ECCTTCC---CCSCCSCTTSCCH
T ss_pred hcccCCC---ceeeeeCCCcCCH
Confidence 7643322 2346789999998
No 305
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=99.93 E-value=2.7e-26 Score=239.50 Aligned_cols=162 Identities=28% Similarity=0.432 Sum_probs=131.9
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCC------eeeE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------FKAL 501 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~------~~~l 501 (599)
.+|...+.||+|+||.||+|++..+..||+|++...... ..+|+++++.++||||+++++++...+ ..++
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 458889999999999999999987777999988543221 236999999999999999999985443 3789
Q ss_pred EEEccCCCChhhhhh--cCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec-CCCcEEEccccCCccC
Q 042902 502 VLEYMPHGSLEKCLY--SSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD-DNMVAHLSDFGMAKPL 578 (599)
Q Consensus 502 v~e~~~~g~L~~~l~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~-~~~~~kl~DFGla~~~ 578 (599)
||||++++.+..... .....+++..+..++.||++||+||| +.+|+||||||+|||++ .++.+||+|||+|+.+
T Consensus 116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH---~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~ 192 (394)
T 4e7w_A 116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIH---SIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKIL 192 (394)
T ss_dssp EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEEETTTTEEEECCCTTCEEC
T ss_pred EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccc
Confidence 999998754433221 22345889999999999999999999 88999999999999999 7999999999999876
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
.... ......||+.|+||
T Consensus 193 ~~~~---~~~~~~~t~~y~aP 210 (394)
T 4e7w_A 193 IAGE---PNVSYICSRYYRAP 210 (394)
T ss_dssp CTTC---CCCSSCSCGGGCCH
T ss_pred cCCC---CCcccccCcCccCH
Confidence 4332 22356789999998
No 306
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.93 E-value=6.5e-26 Score=241.50 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=140.4
Q ss_pred hCCCCcCceecccccceEEEEEe-cCCcEEEEEEecccccccHHHHHHHHHHHhcCCC-CcceeEEEEEEcCCeeeEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-QDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRH-RNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 504 (599)
.++|...+.||+|+||.||+|++ .+++.||||++..... ..++..|+++++.++| ++++.+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 35789999999999999999996 4699999999865432 2457889999999987 556666667778889999999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee---cCCCcEEEccccCCccCCcC
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---DDNMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---~~~~~~kl~DFGla~~~~~~ 581 (599)
|+ +++|.+++......+++..++.|+.||+.||.||| +.+|+||||||+|||+ +.++.+||+|||+|+.+...
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH---~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVH---SKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHH---HCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99 99999999866667999999999999999999999 8899999999999999 68889999999999876543
Q ss_pred CCc-----eeeecccCCccccCC
Q 042902 582 DQS-----LTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~-----~~~~~~~gt~~y~AP 599 (599)
... .......||+.||||
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aP 182 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASV 182 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCH
T ss_pred ccccccccccccccCCCccccCH
Confidence 321 122356799999998
No 307
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=99.93 E-value=3e-26 Score=237.29 Aligned_cols=161 Identities=25% Similarity=0.353 Sum_probs=135.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCee----
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK---- 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~---- 499 (599)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 457888999999999999999865 68999999997542 33457789999999999999999999999877654
Q ss_pred --eEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 500 --ALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 500 --~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
++||||++ |+|.+.+.. .+++..+..++.||+.||.||| +.+|+||||||+||+++.++.+||+|||+|+.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~LH---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH---HCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999997 688887743 3889999999999999999999 88999999999999999999999999999985
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
... ......||+.|+||
T Consensus 194 ~~~-----~~~~~~~t~~y~aP 210 (371)
T 4exu_A 194 ADA-----EMTGYVVTRWYRAP 210 (371)
T ss_dssp -----------CTTCCCTTSCH
T ss_pred ccc-----CcCCcccCccccCH
Confidence 432 22446789999998
No 308
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.93 E-value=2.4e-25 Score=228.54 Aligned_cols=218 Identities=18% Similarity=0.162 Sum_probs=122.7
Q ss_pred CEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCccccc-CChhhhcccccce
Q 042902 23 SRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGI-LPRAIGNLSQSME 101 (599)
Q Consensus 23 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~~l~ 101 (599)
++++.++++++.+ |..+ .+++++|+|++|+|+.+++. +|+++++|++|+|++|+|.+. .+.+|.++++.++
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~-----~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKG-----AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTT-----SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHH-----HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 5677788888864 4444 35788888888888888765 578888888888888887543 3345555554444
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCc
Q 042902 102 VFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNK 181 (599)
Q Consensus 102 ~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (599)
.+.+.+|+++.+.|+.|.++++|++|++++|+|+...+..+....++..|++.+ .|+
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~-----------------------~~~ 140 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-----------------------NIN 140 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES-----------------------CTT
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc-----------------------ccc
Confidence 455555555555555555555555555555555544444444444444444432 133
Q ss_pred cCCCCCcccCCCC-CCcEeecCCCCCCCCCccccCCCcccEEeecC-CCccccCcccccccccccEEEccCCccCCCCCc
Q 042902 182 LSGFVPACFGNLT-SLRNLYLGSNQLTSIPSTLWNLKYILYLNLSS-NSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPT 259 (599)
Q Consensus 182 l~~~~~~~~~~l~-~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 259 (599)
+..+.+..|..+. .++.|+|++|+|+.+|...+...+|+.|++++ |.++.+.+..|.++++|+.|||++|+|+.+.+.
T Consensus 141 i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred cccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 4444444444443 35555555555555555544445555555543 444444444455555555555555555544444
Q ss_pred cccCcccccccc
Q 042902 260 TIGDLKDLQYLF 271 (599)
Q Consensus 260 ~~~~l~~L~~L~ 271 (599)
.|.++++|+.++
T Consensus 221 ~~~~L~~L~~l~ 232 (350)
T 4ay9_X 221 GLENLKKLRARS 232 (350)
T ss_dssp SCTTCCEEECTT
T ss_pred hhccchHhhhcc
Confidence 444444444443
No 309
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.93 E-value=3.8e-28 Score=253.07 Aligned_cols=265 Identities=20% Similarity=0.214 Sum_probs=183.7
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCccc---ccCChhhhccc
Q 042902 21 KLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLD---GILPRAIGNLS 97 (599)
Q Consensus 21 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~---~~~~~~~~~l~ 97 (599)
.|+...++...+.. ++..+..+++|++|+|++|.|+...+. .+...+..+++|++|+|++|.+. +..|..+..+.
T Consensus 10 ~L~~~~l~~~~~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 10 SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAAR-WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCEESSCCSHHHHT-TSHHHHHCSCCCEEECTTSEECHHHHH-HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred ccccCCCCHHHHHH-HHHHHhcCCCccEEECCCCCCCHHHHH-HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 34444444455554 567788889999999999988765332 11124778899999999986543 34444443332
Q ss_pred ccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCc----ccCccccCCCCCCEEEcccccccccCChhhhc----C
Q 042902 98 QSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNG----SIPIALDKLQKLQLLSLEDNQLEGSIPDDLCR----L 169 (599)
Q Consensus 98 ~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----l 169 (599)
..|..+++|++|+|++|.++. .++..+..+++|++|+|++|.+....+..+.. +
T Consensus 88 ------------------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l 149 (386)
T 2ca6_A 88 ------------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149 (386)
T ss_dssp ------------------HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred ------------------HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH
Confidence 456778999999999999987 46677888899999999999987554444443 3
Q ss_pred ---------CCCcEEEeeCCccCC-CCC---cccCCCCCCcEeecCCCCCC------CCCccccCCCcccEEeecCCCcc
Q 042902 170 ---------AALFLLDLGGNKLSG-FVP---ACFGNLTSLRNLYLGSNQLT------SIPSTLWNLKYILYLNLSSNSFT 230 (599)
Q Consensus 170 ---------~~L~~L~Ls~N~l~~-~~~---~~~~~l~~L~~L~L~~N~l~------~ip~~~~~l~~L~~L~Ls~N~l~ 230 (599)
++|++|+|++|+++. ..+ ..+..+++|++|+|++|.++ -+|..+..+++|+.|+|++|.++
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 788888888888862 233 35567778888888888887 23446677778888888888875
Q ss_pred ----ccCcccccccccccEEEccCCccCCC----CCccc--cCcccccccccccccccc----cCcccc-cCCCCccccc
Q 042902 231 ----GPLPLEIGNLRVLVQIDLSMNNFSGF----IPTTI--GDLKDLQYLFLEYNRLQG----SIPDSI-GGLIDLKSLD 295 (599)
Q Consensus 231 ----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~--~~l~~L~~L~L~~N~l~~----~~~~~~-~~l~~L~~L~ 295 (599)
..+|..+..+++|+.|+|++|.+++. ++..+ +.+++|++|+|++|.+++ .+|..+ ..+++|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 45566777777888888888877754 34444 236777777777777775 355555 4567777777
Q ss_pred CCCCcccccC
Q 042902 296 LSNNNISGAI 305 (599)
Q Consensus 296 L~~N~l~~~~ 305 (599)
|++|++++..
T Consensus 310 l~~N~l~~~~ 319 (386)
T 2ca6_A 310 LNGNRFSEED 319 (386)
T ss_dssp CTTSBSCTTS
T ss_pred ccCCcCCcch
Confidence 7777777555
No 310
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.93 E-value=4.1e-26 Score=227.60 Aligned_cols=166 Identities=23% Similarity=0.386 Sum_probs=143.1
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 100 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG 100 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence 467999999999999999999976 68999999986542 345678999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC---CcEEEccccCCccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN---MVAHLSDFGMAKPLLK 580 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~---~~~kl~DFGla~~~~~ 580 (599)
||+++++|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++.+ +.+||+|||+++....
T Consensus 101 e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~LH---~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~ 176 (287)
T 2wei_A 101 ELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYMH---KHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ 176 (287)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHHH---HTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCC
T ss_pred EccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeccCCChhhEEEecCCCcccEEEeccCcceeecC
Confidence 9999999998886543 4889999999999999999999 8899999999999999754 4799999999986543
Q ss_pred CCCceeeecccCCccccCC
Q 042902 581 EDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 581 ~~~~~~~~~~~gt~~y~AP 599 (599)
.. ......||+.|+||
T Consensus 177 ~~---~~~~~~~~~~y~aP 192 (287)
T 2wei_A 177 NT---KMKDRIGTAYYIAP 192 (287)
T ss_dssp CS---SCSCHHHHHTTCCH
T ss_pred CC---ccccccCcccccCh
Confidence 22 12334688999998
No 311
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=239.47 Aligned_cols=164 Identities=23% Similarity=0.315 Sum_probs=122.4
Q ss_pred CCc-CceecccccceEEEEEec---CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEc--CCeeeEEE
Q 042902 430 FSE-NNLIGRGGVASVYKARIQ---DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSN--DDFKALVL 503 (599)
Q Consensus 430 ~~~-~~~ig~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~--~~~~~lv~ 503 (599)
|.. .++||+|+||.||+|++. +++.||||++.... ....+.+|++++++++|||||++++++.. ....++||
T Consensus 22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~ 99 (405)
T 3rgf_A 22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLF 99 (405)
T ss_dssp EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEE
T ss_pred hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEE
Confidence 444 458999999999999965 57899999996442 33578899999999999999999999954 66899999
Q ss_pred EccCCCChhhhhhcC--------CCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee----cCCCcEEEcc
Q 042902 504 EYMPHGSLEKCLYSS--------NYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL----DDNMVAHLSD 571 (599)
Q Consensus 504 e~~~~g~L~~~l~~~--------~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill----~~~~~~kl~D 571 (599)
||++ |+|.+++... ...+++..+..|+.||+.||+||| +.+|+||||||+|||+ +.++.+||+|
T Consensus 100 e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH---~~~ivH~Dlkp~NIll~~~~~~~~~~kl~D 175 (405)
T 3rgf_A 100 DYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLH---ANWVLHRDLKPANILVMGEGPERGRVKIAD 175 (405)
T ss_dssp ECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECCSSTTTTCEEECC
T ss_pred eCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHH---hCCEeCCCcCHHHeEEecCCCCCCcEEEEE
Confidence 9996 4887776521 124888999999999999999999 8899999999999999 6778999999
Q ss_pred ccCCccCCcCCCc-eeeecccCCccccCC
Q 042902 572 FGMAKPLLKEDQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 572 FGla~~~~~~~~~-~~~~~~~gt~~y~AP 599 (599)
||+|+.+...... .......||+.|+||
T Consensus 176 fg~a~~~~~~~~~~~~~~~~~gt~~y~aP 204 (405)
T 3rgf_A 176 MGFARLFNSPLKPLADLDPVVVTFWYRAP 204 (405)
T ss_dssp TTCCC----------------CCCTTCCH
T ss_pred CCCceecCCCCcccccCCCceecCcccCc
Confidence 9999876432211 223456899999998
No 312
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=99.93 E-value=3.4e-26 Score=232.53 Aligned_cols=167 Identities=28% Similarity=0.401 Sum_probs=138.8
Q ss_pred HhCCCCcCceecccccceEEEEEe--cCCcEEEEEEecccc--cccHHHHHHHHHHHhcC---CCCcceeEEEEEE----
Q 042902 426 ATNGFSENNLIGRGGVASVYKARI--QDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRI---RHRNLIKIISSCS---- 494 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~--~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l---~h~niv~l~~~~~---- 494 (599)
+.++|+..+.||+|+||.||+|+. .+|+.||||+++... ......+.+|+.+++.+ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 456899999999999999999997 368899999986442 22234566777777666 8999999999987
Q ss_pred -cCCeeeEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccc
Q 042902 495 -NDDFKALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDF 572 (599)
Q Consensus 495 -~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DF 572 (599)
.....++||||++ |+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~gi~H~dlkp~Nili~~~~~~kl~Df 164 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH---SHRVVHRDLKPQNILVTSSGQIKLADF 164 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HCCceeccCCHHHeEEcCCCCEEEecC
Confidence 4567899999997 69999987654 34889999999999999999999 889999999999999999999999999
Q ss_pred cCCccCCcCCCceeeecccCCccccCC
Q 042902 573 GMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 573 Gla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+++...... ......||+.|+||
T Consensus 165 g~~~~~~~~~---~~~~~~~~~~y~aP 188 (326)
T 1blx_A 165 GLARIYSFQM---ALTSVVVTLWYRAP 188 (326)
T ss_dssp CSCCCCCGGG---GGCCCCCCCTTCCH
T ss_pred cccccccCCC---CccccccccceeCH
Confidence 9998654322 23446789999998
No 313
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=99.93 E-value=8.1e-26 Score=238.40 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=138.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcC------CCCcceeEEEEEEcCCee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRI------RHRNLIKIISSCSNDDFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l------~h~niv~l~~~~~~~~~~ 499 (599)
..+|+..+.||+|+||.||+|... +++.||||+++.. ....+++..|+++++.+ .|+||+++++++...+..
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 356889999999999999999866 5899999999643 23346678888888877 577999999999999999
Q ss_pred eEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc--EEEccccCCc
Q 042902 500 ALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV--AHLSDFGMAK 576 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~--~kl~DFGla~ 576 (599)
++||||++ |+|.+++.... ..+++..+..++.||++||+||| +.+|+||||||+|||++.++. +||+|||+|+
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH---KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999996 69998887654 35899999999999999999999 889999999999999999887 9999999997
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... .....||+.||||
T Consensus 251 ~~~~~-----~~~~~gt~~y~aP 268 (429)
T 3kvw_A 251 YEHQR-----VYTYIQSRFYRAP 268 (429)
T ss_dssp ETTCC-----CCSSCSCGGGCCH
T ss_pred ecCCc-----ccccCCCCCccCh
Confidence 54321 2345799999998
No 314
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.93 E-value=5e-26 Score=234.11 Aligned_cols=161 Identities=25% Similarity=0.358 Sum_probs=135.3
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe-----
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF----- 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~----- 498 (599)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++++++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 357888999999999999999975 68999999996542 2335678999999999999999999999987654
Q ss_pred -eeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 499 -KALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 499 -~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
.++||||++ |+|.+++.. .+++..+..++.||++||.||| +.+|+||||||+||+++.++.+||+|||+++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~LH---~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYIH---SAGVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHHH---HTTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999997 688887753 3889999999999999999999 88999999999999999999999999999985
Q ss_pred CCcCCCceeeecccCCccccCC
Q 042902 578 LLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 578 ~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.... .....||+.|+||
T Consensus 176 ~~~~-----~~~~~~t~~y~aP 192 (353)
T 3coi_A 176 ADAE-----MTGYVVTRWYRAP 192 (353)
T ss_dssp -------------CCSBCCSCH
T ss_pred CCCC-----ccccccCcCcCCH
Confidence 4321 2345789999998
No 315
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=3.3e-27 Score=243.73 Aligned_cols=255 Identities=20% Similarity=0.216 Sum_probs=148.5
Q ss_pred EEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCC----hhhhcccccceEEEccCCcccccCCccccCC--
Q 042902 48 RLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILP----RAIGNLSQSMEVFFMFNCNISGSIPEEISNL-- 121 (599)
Q Consensus 48 ~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~----~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l-- 121 (599)
.++|++|.+++..+. .+...++|++|||++|.|++..+ .+|..++..++.|++++|.+++..+..|..+
T Consensus 2 ~~~ls~n~~~~~~~~-----~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE-----FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCCHHHH-----HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchHHHHH-----HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 456777777765543 24444558888888888877666 5566665457777777777776666666554
Q ss_pred ---CCCCEEEccCCcCCcccCcc----ccCC-CCCCEEEcccccccccCChhhhc-----CCCCcEEEeeCCccCCCCCc
Q 042902 122 ---TNLTTIYLGGNKLNGSIPIA----LDKL-QKLQLLSLEDNQLEGSIPDDLCR-----LAALFLLDLGGNKLSGFVPA 188 (599)
Q Consensus 122 ---~~L~~L~L~~N~l~~~~~~~----~~~l-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~ 188 (599)
++|++|+|++|.+++..+.. +..+ ++|++|+|++|++++..+..+.. .++|++|+|++|++++....
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 67777777777776555543 3333 67777777777776555544433 24677777777776643332
Q ss_pred c----cCCCC-CCcEeecCCCCCCCCCc-----cccCC-CcccEEeecCCCccccC----cccccc-cccccEEEccCCc
Q 042902 189 C----FGNLT-SLRNLYLGSNQLTSIPS-----TLWNL-KYILYLNLSSNSFTGPL----PLEIGN-LRVLVQIDLSMNN 252 (599)
Q Consensus 189 ~----~~~l~-~L~~L~L~~N~l~~ip~-----~~~~l-~~L~~L~Ls~N~l~~~~----~~~~~~-l~~L~~L~Ls~N~ 252 (599)
. +..++ +|++|+|++|+++..+. .+... ++|++|+|++|.+++.. +..+.. .++|+.|+|++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2 23333 66777777776664432 22233 36666666666666532 223333 2366666666666
Q ss_pred cCCCCC----ccccCcccccccccccccccccCc-------ccccCCCCcccccCCCCcccccCCc
Q 042902 253 FSGFIP----TTIGDLKDLQYLFLEYNRLQGSIP-------DSIGGLIDLKSLDLSNNNISGAIPI 307 (599)
Q Consensus 253 l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~p~ 307 (599)
+++..+ ..+..+++|++|+|++|.+.+..+ ..+..+++|+.||+++|++....+.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 665433 223455666666666666443322 2344455555555555555544333
No 316
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=99.93 E-value=4.3e-26 Score=238.33 Aligned_cols=162 Identities=25% Similarity=0.303 Sum_probs=135.6
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC--------CCcceeEEEEEE----
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR--------HRNLIKIISSCS---- 494 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--------h~niv~l~~~~~---- 494 (599)
++|...+.||+|+||.||+|+.. +++.||||+++.. ....+.+.+|++++++++ ||||+++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 115 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV 115 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence 57889999999999999999865 6889999999643 234567889999999985 788999999987
Q ss_pred cCCeeeEEEEccCCCChhhhhhcC-CCcCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEccCCCCCeeecCCC-------
Q 042902 495 NDDFKALVLEYMPHGSLEKCLYSS-NYILDIFQRLNIMIDVASALEYLHFGYSV-PIIHCDLKPNNVLLDDNM------- 565 (599)
Q Consensus 495 ~~~~~~lv~e~~~~g~L~~~l~~~-~~~~~~~~~~~i~~~i~~~l~~lH~~~~~-~iiH~dlk~~Nill~~~~------- 565 (599)
.....++||||+ +|++.+.+... ...+++..+..|+.||++||+||| +. +|+||||||+|||++.++
T Consensus 116 ~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~givHrDikp~NIll~~~~~~~~~~~ 191 (397)
T 1wak_A 116 NGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLH---TKCRIIHTDIKPENILLSVNEQYIRRLA 191 (397)
T ss_dssp TEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECCCCSGGGEEECCCHHHHHHHH
T ss_pred CCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHeeEeccchhhhhhh
Confidence 456889999999 55666555443 346899999999999999999999 77 999999999999999775
Q ss_pred ------------------------------------------cEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 566 ------------------------------------------VAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 566 ------------------------------------------~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
.+||+|||+|+..... .....||+.||||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aP 262 (397)
T 1wak_A 192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSL 262 (397)
T ss_dssp HHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCH
T ss_pred hhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCC
Confidence 7999999999865322 2345789999998
No 317
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=99.93 E-value=9.4e-27 Score=235.89 Aligned_cols=168 Identities=24% Similarity=0.401 Sum_probs=138.7
Q ss_pred HhCCCCcCceecccccceEEEEEecCCcEEEEEEecccc--cccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQY--EGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
..++|+..+.||+|+||.||+|++.+ .||+|+++... ....+.|.+|+.++++++||||+++++++.+.+..++||
T Consensus 31 ~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~ 108 (319)
T 2y4i_B 31 PFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIIT 108 (319)
T ss_dssp CCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEEC
T ss_pred CHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEe
Confidence 35678899999999999999998753 59999986542 233456888999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC-
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED- 582 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~- 582 (599)
||+++++|.+++...+..+++..+..++.||++||+||| +.+|+||||||+||+++ ++.+||+|||+|+......
T Consensus 109 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH---~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~ 184 (319)
T 2y4i_B 109 SLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLH---AKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA 184 (319)
T ss_dssp BCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHH---HTTCCCCCCCSTTEEEC---CCEECCCSCCC-------
T ss_pred ecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH---hCCccccCCChhhEEEe-CCCEEEeecCCccccccccc
Confidence 999999999999877667889999999999999999999 88999999999999998 6799999999987543211
Q ss_pred --CceeeecccCCccccCC
Q 042902 583 --QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 --~~~~~~~~~gt~~y~AP 599 (599)
.........||+.|+||
T Consensus 185 ~~~~~~~~~~~g~~~y~aP 203 (319)
T 2y4i_B 185 GRREDKLRIQNGWLCHLAP 203 (319)
T ss_dssp ---CCSCBCCSGGGGTSCH
T ss_pred cccccccccCCCcccccCh
Confidence 11122345689999998
No 318
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=240.80 Aligned_cols=165 Identities=25% Similarity=0.420 Sum_probs=130.9
Q ss_pred CCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEEEEcc
Q 042902 428 NGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
.+|...+.||+|+||+||.....+|+.||||++...... .+.+|+++++++ +|||||++++++.+.+..|+|||||
T Consensus 24 ~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~ 100 (432)
T 3p23_A 24 ISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS---FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIELC 100 (432)
T ss_dssp EEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE---ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred EEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH---HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEECC
Confidence 457788999999999976555567999999998654322 356799999999 7999999999999999999999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC-----CCcEEEccccCCccCCcC
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD-----NMVAHLSDFGMAKPLLKE 581 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~-----~~~~kl~DFGla~~~~~~ 581 (599)
+ |+|.+++........+..+..++.||++||.||| +.+|+||||||+||+++. ...+||+|||+|+.....
T Consensus 101 ~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~ 176 (432)
T 3p23_A 101 A-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVG 176 (432)
T ss_dssp S-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHH---HTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC---
T ss_pred C-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHH---HCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCC
Confidence 6 5999999876654555566789999999999999 889999999999999953 236889999999876433
Q ss_pred CCc-eeeecccCCccccCC
Q 042902 582 DQS-LTQTQTLATIGYMAP 599 (599)
Q Consensus 582 ~~~-~~~~~~~gt~~y~AP 599 (599)
... .......||++||||
T Consensus 177 ~~~~~~~~~~~gt~~y~AP 195 (432)
T 3p23_A 177 RHSFSRRSGVPGTEGWIAP 195 (432)
T ss_dssp ---------CCSCTTSCCG
T ss_pred CcceeeccccCCCcCccCh
Confidence 211 223456799999999
No 319
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.7e-26 Score=231.81 Aligned_cols=167 Identities=25% Similarity=0.333 Sum_probs=134.6
Q ss_pred HHhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc------ccHHHHHHHHHHHhcC----CCCcceeEEEEE
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE------GAFKSFDIECDMMKRI----RHRNLIKIISSC 493 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l----~h~niv~l~~~~ 493 (599)
...++|...+.||+|+||.||+|+.. +++.||||+++.... .....+..|+.++.++ +||||+++++++
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~ 107 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWF 107 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEE
Confidence 34578999999999999999999864 689999999965432 1223466799999888 899999999999
Q ss_pred EcCCeeeEEEEc-cCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec-CCCcEEEcc
Q 042902 494 SNDDFKALVLEY-MPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD-DNMVAHLSD 571 (599)
Q Consensus 494 ~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~-~~~~~kl~D 571 (599)
...+..++|||| +++++|.+++.... .+++..+..++.||++||.||| +.+|+||||||+||+++ .++.+||+|
T Consensus 108 ~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~kl~d 183 (312)
T 2iwi_A 108 ETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLID 183 (312)
T ss_dssp -----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HHTEECCCCSGGGEEEETTTTEEEECC
T ss_pred ecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHH---HCCeeecCCChhhEEEeCCCCeEEEEE
Confidence 999999999999 89999999997644 4889999999999999999999 88999999999999999 889999999
Q ss_pred ccCCccCCcCCCceeeecccCCccccCC
Q 042902 572 FGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 572 FGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||+++...... .....||+.|+||
T Consensus 184 fg~~~~~~~~~----~~~~~~~~~y~aP 207 (312)
T 2iwi_A 184 FGSGALLHDEP----YTDFDGTRVYSPP 207 (312)
T ss_dssp CSSCEECCSSC----BCCCCSCTTTSCH
T ss_pred cchhhhcccCc----ccccCCcccccCc
Confidence 99998664322 2345689999998
No 320
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.93 E-value=1.1e-25 Score=229.05 Aligned_cols=166 Identities=26% Similarity=0.325 Sum_probs=125.7
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccc-cccHHHHHHHHH-HHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY-EGAFKSFDIECD-MMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~e~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|...+.||+|+||.||+|... +|+.||||+++... .....++..|+. +++.++||||+++++++...+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 357888899999999999999975 68999999997553 233445666665 777889999999999999999999999
Q ss_pred EccCCCChhhhhhc----CCCcCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEccCCCCCeeecCCCcEEEccccCCccC
Q 042902 504 EYMPHGSLEKCLYS----SNYILDIFQRLNIMIDVASALEYLHFGYSV-PIIHCDLKPNNVLLDDNMVAHLSDFGMAKPL 578 (599)
Q Consensus 504 e~~~~g~L~~~l~~----~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~-~iiH~dlk~~Nill~~~~~~kl~DFGla~~~ 578 (599)
||+++ +|.+++.. ....+++..+..++.|+++||.||| +. +|+||||||+||+++.++.+||+|||+++..
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH---~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLK---ENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHH---HHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHh---ccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 99975 88777652 2345889999999999999999999 77 9999999999999999999999999999865
Q ss_pred CcCCCceeeecccCCccccCC
Q 042902 579 LKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 579 ~~~~~~~~~~~~~gt~~y~AP 599 (599)
.... ......||+.|+||
T Consensus 177 ~~~~---~~~~~~gt~~y~aP 194 (327)
T 3aln_A 177 VDSI---AKTRDAGCRPYMAP 194 (327)
T ss_dssp ---------------------
T ss_pred cccc---ccccCCCCccccCc
Confidence 4322 22334789999998
No 321
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=99.93 E-value=1.5e-25 Score=230.99 Aligned_cols=173 Identities=22% Similarity=0.307 Sum_probs=129.5
Q ss_pred HHHHHHhCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCe-
Q 042902 421 LELFQATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF- 498 (599)
Q Consensus 421 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~- 498 (599)
.+.....++|...+.||+|+||.||+|+.. +|+.||||++.... .....+..|++.++.++||||+++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 345566789999999999999999999975 68999999985442 233466778888999999999999999865432
Q ss_pred ------eeEEEEccCCCChhhhhh---cCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC-CCcEE
Q 042902 499 ------KALVLEYMPHGSLEKCLY---SSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD-NMVAH 568 (599)
Q Consensus 499 ------~~lv~e~~~~g~L~~~l~---~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~-~~~~k 568 (599)
.++||||+++ ++.+.+. .....+++..+..++.|++.||.|+|. .+.+|+||||||+|||++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-PSVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-TTTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-CCCCeecCcCCHHHEEEeCCCCcEE
Confidence 7899999986 5544433 234457888899999999999999993 3678999999999999996 89999
Q ss_pred EccccCCccCCcCCCceeeecccCCccccCC
Q 042902 569 LSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 569 l~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
|+|||+|+.+.... ......||+.|+||
T Consensus 173 l~Dfg~a~~~~~~~---~~~~~~gt~~y~aP 200 (360)
T 3e3p_A 173 LCDFGSAKKLSPSE---PNVAYICSRYYRAP 200 (360)
T ss_dssp ECCCTTCBCCCTTS---CCCSTTSCGGGCCH
T ss_pred EeeCCCceecCCCC---CcccccCCcceeCH
Confidence 99999998764332 22346789999998
No 322
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=7.2e-26 Score=228.49 Aligned_cols=201 Identities=19% Similarity=0.211 Sum_probs=139.7
Q ss_pred CCCCEEEccCCcCCcccCccc--cCCCCCCEEEcccccccccCC----hhhhcCCCCcEEEeeCCccCCCCCcccCCCCC
Q 042902 122 TNLTTIYLGGNKLNGSIPIAL--DKLQKLQLLSLEDNQLEGSIP----DDLCRLAALFLLDLGGNKLSGFVPACFGNLTS 195 (599)
Q Consensus 122 ~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 195 (599)
++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|++++..+..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457777777777776666666 667777777777777765444 33456777777777777777777777777777
Q ss_pred CcEeecCCCCCCC---CCc--cccCCCcccEEeecCCCccccCcc---cccccccccEEEccCCccCCCCCccccCc---
Q 042902 196 LRNLYLGSNQLTS---IPS--TLWNLKYILYLNLSSNSFTGPLPL---EIGNLRVLVQIDLSMNNFSGFIPTTIGDL--- 264 (599)
Q Consensus 196 L~~L~L~~N~l~~---ip~--~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--- 264 (599)
|++|+|++|++.. ++. .+..+++|++|+|++|+++...+. .+..+++|++|||++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 7777777777653 322 235677777777777777632211 24667788888888888887767666665
Q ss_pred ccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcc
Q 042902 265 KDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 265 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 327 (599)
++|++|+|++|+++ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888888 4555553 6888888888888854 33 5677888888888888763
No 323
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.92 E-value=6e-26 Score=230.16 Aligned_cols=166 Identities=23% Similarity=0.293 Sum_probs=141.7
Q ss_pred HhCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc------ccHHHHHHHHHHHhcCC--CCcceeEEEEEEcC
Q 042902 426 ATNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE------GAFKSFDIECDMMKRIR--HRNLIKIISSCSND 496 (599)
Q Consensus 426 ~~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~ 496 (599)
..++|+..+.||+|+||.||+|... +++.||||++..... ...+.+..|+.++++++ ||||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 4567999999999999999999864 689999999965421 12245778999999996 59999999999999
Q ss_pred CeeeEEEEccCC-CChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec-CCCcEEEccccC
Q 042902 497 DFKALVLEYMPH-GSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD-DNMVAHLSDFGM 574 (599)
Q Consensus 497 ~~~~lv~e~~~~-g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~-~~~~~kl~DFGl 574 (599)
+..++||||+++ ++|.+++.... .+++..+..++.||++||+||| +.+|+||||||+||+++ +++.+||+|||+
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~LH---~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~ 196 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGS 196 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEETTTTEEEECCCTT
T ss_pred CcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHH---HCCcEeCCCCHHHEEEeCCCCCEEEeeCcc
Confidence 999999999986 89999987643 4788999999999999999999 88999999999999999 789999999999
Q ss_pred CccCCcCCCceeeecccCCccccCC
Q 042902 575 AKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 575 a~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++..... ......||+.|+||
T Consensus 197 ~~~~~~~----~~~~~~gt~~y~aP 217 (320)
T 3a99_A 197 GALLKDT----VYTDFDGTRVYSPP 217 (320)
T ss_dssp CEECCSS----CBCCCCSCGGGSCH
T ss_pred ccccccc----cccCCCCCccCCCh
Confidence 9866432 22345799999998
No 324
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=99.92 E-value=1.7e-25 Score=228.41 Aligned_cols=163 Identities=19% Similarity=0.309 Sum_probs=139.3
Q ss_pred hCCCCcCceecccccceEEEEEe-c-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCc------ceeEEEEEEcCCe
Q 042902 427 TNGFSENNLIGRGGVASVYKARI-Q-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN------LIKIISSCSNDDF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~ 498 (599)
.++|+..+.||+|+||.||+|.. . +++.||||+++.. ....+.+..|+++++.++|++ ++++++++.+.+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 35788999999999999999986 3 6889999999643 234567889999999887654 9999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCCC-cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC--------------
Q 042902 499 KALVLEYMPHGSLEKCLYSSNY-ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD-------------- 563 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~-------------- 563 (599)
.++||||+ +++|.+++..... .+++..+..++.||++||+||| +.+|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH---~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLH---SNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---HTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 8899999876543 5788999999999999999999 889999999999999987
Q ss_pred -----CCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 564 -----NMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 564 -----~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
++.+||+|||+|+..... .....||+.|+||
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aP 203 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAP 203 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCH
T ss_pred cccccCCCceEeeCcccccCccc-----cccccCCccccCh
Confidence 668999999999864322 2345789999998
No 325
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1.9e-25 Score=225.42 Aligned_cols=225 Identities=19% Similarity=0.208 Sum_probs=187.9
Q ss_pred CCCcEEEcccCcccccCChh---hhcccccceEEEccCCcccccCCccc--cCCCCCCEEEccCCcCCcccC----cccc
Q 042902 73 KYLKYLSFSNNSLDGILPRA---IGNLSQSMEVFFMFNCNISGSIPEEI--SNLTNLTTIYLGGNKLNGSIP----IALD 143 (599)
Q Consensus 73 ~~L~~L~Ls~N~i~~~~~~~---~~~l~~~l~~l~l~~n~i~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~----~~~~ 143 (599)
..++.|.++++.++...-.. +..++ .++.|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45788999888876321111 12233 49999999999999999998 899999999999999997555 3456
Q ss_pred CCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCC---CC-CcccCCCCCCcEeecCCCCCCCCCcc----ccC
Q 042902 144 KLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSG---FV-PACFGNLTSLRNLYLGSNQLTSIPST----LWN 215 (599)
Q Consensus 144 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~-~~~~~~l~~L~~L~L~~N~l~~ip~~----~~~ 215 (599)
.+++|++|+|++|++.+..+..|..+++|++|+|++|++.+ .. +..+..+++|++|+|++|+++.+|.. +..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 79999999999999998888999999999999999999865 22 23457899999999999999977653 467
Q ss_pred CCcccEEeecCCCccccCccccccc---ccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcc
Q 042902 216 LKYILYLNLSSNSFTGPLPLEIGNL---RVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLK 292 (599)
Q Consensus 216 l~~L~~L~Ls~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 292 (599)
+++|++|+|++|++++..|..+..+ ++|++|+|++|+|+. +|..+. ++|++|+|++|+|++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999999888877776 699999999999994 566664 8999999999999965 33 68889999
Q ss_pred cccCCCCcccc
Q 042902 293 SLDLSNNNISG 303 (599)
Q Consensus 293 ~L~L~~N~l~~ 303 (599)
.|+|++|+++.
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 99999999974
No 326
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.92 E-value=1.5e-25 Score=236.88 Aligned_cols=164 Identities=27% Similarity=0.375 Sum_probs=126.1
Q ss_pred CCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcC-CCCcceeEEEEEEcCCeeeEEEEccC
Q 042902 429 GFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALVLEYMP 507 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~ 507 (599)
.|...+.||+|+||+||.+...+|+.||||++... ..+.+..|++++.++ +|||||++++++.+++..++|||||+
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 34456889999999998776668999999998643 235678899999876 89999999999999999999999995
Q ss_pred CCChhhhhhcCCCcC------CHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC-------------CcEE
Q 042902 508 HGSLEKCLYSSNYIL------DIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN-------------MVAH 568 (599)
Q Consensus 508 ~g~L~~~l~~~~~~~------~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~-------------~~~k 568 (599)
|+|.+++....... ++..+..++.||++||+||| +.+|+||||||+|||++.+ +.+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH---~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k 168 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHH---HCCccccCCChHhEEEecCcccccccccCCCceEEE
Confidence 69999997654311 22235679999999999999 8899999999999999754 4899
Q ss_pred EccccCCccCCcCCCce--eeecccCCccccCC
Q 042902 569 LSDFGMAKPLLKEDQSL--TQTQTLATIGYMAP 599 (599)
Q Consensus 569 l~DFGla~~~~~~~~~~--~~~~~~gt~~y~AP 599 (599)
|+|||+|+.+....... ......||++||||
T Consensus 169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aP 201 (434)
T 2rio_A 169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAP 201 (434)
T ss_dssp ECCCTTCEECCC--------------CCTTSCH
T ss_pred EcccccceecCCCCccceeeecCCCCCCCccCH
Confidence 99999998765432211 12346799999998
No 327
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.92 E-value=2.5e-25 Score=227.15 Aligned_cols=162 Identities=24% Similarity=0.329 Sum_probs=119.9
Q ss_pred hCCCCcC-ceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEEEc----CCeee
Q 042902 427 TNGFSEN-NLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSCSN----DDFKA 500 (599)
Q Consensus 427 ~~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~----~~~~~ 500 (599)
.++|... +.||+|+||.||+|... +|+.||||++.... .........++.++||||+++++++.. ....+
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 102 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLL 102 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence 4567774 46999999999999976 69999999986432 122223334566799999999999875 44589
Q ss_pred EEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC---CCcEEEccccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD---NMVAHLSDFGMAK 576 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~---~~~~kl~DFGla~ 576 (599)
+||||+++|+|.+++.... ..+++..+..++.||++||.||| +.+|+||||||+||+++. ++.+||+|||+|+
T Consensus 103 lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH---~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~ 179 (336)
T 3fhr_A 103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK 179 (336)
T ss_dssp EEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH---HTTEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH---hCCeecCCCCHHHEEEEecCCCceEEEeccccce
Confidence 9999999999999998754 35899999999999999999999 889999999999999986 4559999999998
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... ......||+.|+||
T Consensus 180 ~~~~~----~~~~~~~t~~y~aP 198 (336)
T 3fhr_A 180 ETTQN----ALQTPCYTPYYVAP 198 (336)
T ss_dssp EC---------------------
T ss_pred ecccc----ccccCCCCcCccCh
Confidence 65322 22345789999998
No 328
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=4.8e-25 Score=222.04 Aligned_cols=196 Identities=27% Similarity=0.384 Sum_probs=152.8
Q ss_pred ccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCc
Q 042902 118 ISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLR 197 (599)
Q Consensus 118 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 197 (599)
+..+++|++|++++|.++.. + .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|++++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 44567788888888888754 3 57778888888888888875544 77888888888888888764 3577888888
Q ss_pred EeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccc
Q 042902 198 NLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRL 277 (599)
Q Consensus 198 ~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 277 (599)
+|++++|.++.+|. +..+++|++|++++|.+++..+ +..+++|+.|+|++|.+++..+ +..+++|+.|++++|++
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 88888888887764 7778888888888888876544 7788888888888888886544 78888888888888888
Q ss_pred cccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCccc
Q 042902 278 QGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGE 328 (599)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 328 (599)
++..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred CcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 86544 7888888888888888886553 77888888888888888753
No 329
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.92 E-value=1.7e-25 Score=226.45 Aligned_cols=166 Identities=22% Similarity=0.295 Sum_probs=123.9
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc--ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE--GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
.++|+..+.||+|+||.||+|++. +|+.||||++..... ...+.+..+..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 356888899999999999999976 689999999975432 22234455556788889999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSV-PIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~-~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
||+ ++.+..+.......+++..+..++.|+++||.||| +. +|+||||||+||+++.++.+||+|||+++......
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH---~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLK---EKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH---hhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence 999 55666655544456899999999999999999999 74 99999999999999999999999999998654322
Q ss_pred CceeeecccCCccccCC
Q 042902 583 QSLTQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~~~~~~~gt~~y~AP 599 (599)
......||+.|+||
T Consensus 180 ---~~~~~~~~~~y~aP 193 (318)
T 2dyl_A 180 ---AKDRSAGCAAYMAP 193 (318)
T ss_dssp ----------CCTTCCH
T ss_pred ---cccccCCCccccCh
Confidence 22345689999998
No 330
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.92 E-value=8.6e-26 Score=245.98 Aligned_cols=167 Identities=29% Similarity=0.422 Sum_probs=140.3
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEeccc-ccccHHHHHHHHHHHhcCCCCcceeEEEEEEc------CCe
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQ-YEGAFKSFDIECDMMKRIRHRNLIKIISSCSN------DDF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~------~~~ 498 (599)
.++|...+.||+|+||.||+|.+. +|+.||||+++.. .....+.+..|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 367999999999999999999875 6899999998654 33445779999999999999999999998765 667
Q ss_pred eeEEEEccCCCChhhhhhcCCC--cCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCc---EEEcccc
Q 042902 499 KALVLEYMPHGSLEKCLYSSNY--ILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMV---AHLSDFG 573 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~---~kl~DFG 573 (599)
.++||||+++|+|.+++..... .+++..+..++.|++.||+||| +.+|+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLH---s~gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHH---HTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH---HCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 8999999999999999986442 5788889999999999999999 889999999999999997664 9999999
Q ss_pred CCccCCcCCCceeeecccCCccccCC
Q 042902 574 MAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 574 la~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+|+...... ......||+.|+||
T Consensus 170 ~a~~~~~~~---~~~~~~gt~~Y~AP 192 (676)
T 3qa8_A 170 YAKELDQGE---LCTEFVGTLQYLAP 192 (676)
T ss_dssp CCCBTTSCC---CCCCCCSCCTTCSS
T ss_pred ccccccccc---ccccccCCcccCCh
Confidence 998664332 22446799999999
No 331
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=1e-24 Score=219.69 Aligned_cols=209 Identities=24% Similarity=0.364 Sum_probs=111.3
Q ss_pred EEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEE
Q 042902 24 RLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVF 103 (599)
Q Consensus 24 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l 103 (599)
.+.+..+.++++. .+..+++|++|++++|.++.++ .+..+++|++|+|++|.|+++.+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-------~~~~l~~L~~L~L~~n~i~~~~~------------- 80 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-------GVQYLNNLIGLELKDNQITDLAP------------- 80 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG-------------
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-------hhhccCCCCEEEccCCcCCCChh-------------
Confidence 3344555555432 2445666666666666666543 25556666666666666653322
Q ss_pred EccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccC
Q 042902 104 FMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLS 183 (599)
Q Consensus 104 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 183 (599)
+.++++|++|+|++|.+++. ..+..+++|++|+|++|++++. + .+..+++|++|++++|+++
T Consensus 81 --------------~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 81 --------------LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp --------------GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred --------------HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC
Confidence 33444455555555554432 1344455555555555555432 1 2445555555555555555
Q ss_pred CCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccC
Q 042902 184 GFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGD 263 (599)
Q Consensus 184 ~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 263 (599)
+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|.+++..+ +..+++|+.|+|++|++++..+ +..
T Consensus 143 ~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 143 NISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred cCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence 4322 4455555555555555555544 4555555555555555554332 5556666666666666665432 566
Q ss_pred cccccccccccccccc
Q 042902 264 LKDLQYLFLEYNRLQG 279 (599)
Q Consensus 264 l~~L~~L~L~~N~l~~ 279 (599)
+++|+.|+|++|++++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 6666666666666653
No 332
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=99.92 E-value=7.2e-25 Score=227.89 Aligned_cols=165 Identities=24% Similarity=0.360 Sum_probs=138.2
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC-CC-----cceeEEEEEEcCCee
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HR-----NLIKIISSCSNDDFK 499 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~-----niv~l~~~~~~~~~~ 499 (599)
.++|...+.||+|+||.||+|... +++.||||+++.. .....++..|+++++.++ |+ +|+++++++...+..
T Consensus 53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 131 (382)
T 2vx3_A 53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHL 131 (382)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEE
T ss_pred eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCce
Confidence 568999999999999999999876 6889999999643 233567788888888875 44 499999999999999
Q ss_pred eEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeec--CCCcEEEccccCCc
Q 042902 500 ALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLD--DNMVAHLSDFGMAK 576 (599)
Q Consensus 500 ~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~--~~~~~kl~DFGla~ 576 (599)
++||||++ |+|.+++.... ..+++..+..++.|++.||.|||.. ..+|+||||||+|||++ .++.+||+|||+|+
T Consensus 132 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~ 209 (382)
T 2vx3_A 132 CLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSC 209 (382)
T ss_dssp EEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccCce
Confidence 99999996 59999987654 3588999999999999999999932 46899999999999995 57789999999998
Q ss_pred cCCcCCCceeeecccCCccccCC
Q 042902 577 PLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 577 ~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..... .....||+.||||
T Consensus 210 ~~~~~-----~~~~~~t~~y~aP 227 (382)
T 2vx3_A 210 QLGQR-----IYQYIQSRFYRSP 227 (382)
T ss_dssp ETTCC-----CCSSCSCGGGCCH
T ss_pred ecccc-----cccccCCccccCh
Confidence 65322 2346799999998
No 333
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=7.7e-26 Score=230.97 Aligned_cols=254 Identities=15% Similarity=0.188 Sum_probs=134.5
Q ss_pred CCCEEEccCccccccCCccccCC--CCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCccccc-CChhhhccc
Q 042902 21 KLSRLELEMNSFYGFIPNTFGNL--RNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGI-LPRAIGNLS 97 (599)
Q Consensus 21 ~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~ 97 (599)
.++.|++++|.+. +..+..+ ++++.|++++|.++...+. +..+++|++|+|++|.+++. .+..+..++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 4677888877776 3556666 7788888888887776553 45677788888888777643 444444443
Q ss_pred ccceEEEccCCcccccCCccccCCCCCCEEEccCC-cCCcc-cCccccCCCCCCEEEcccc-ccccc-CChhhhcCC-CC
Q 042902 98 QSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGN-KLNGS-IPIALDKLQKLQLLSLEDN-QLEGS-IPDDLCRLA-AL 172 (599)
Q Consensus 98 ~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L 172 (599)
.|+.|++++|.+++..+..+..+++|++|+|++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus 119 -~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 119 -KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp -CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred -CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 3555555555555444455555555555555555 34431 3333444555555555555 44432 233344444 44
Q ss_pred cEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCC--CCCccccCCCcccEEeecCCC-ccccCcccccccccccEEEcc
Q 042902 173 FLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLT--SIPSTLWNLKYILYLNLSSNS-FTGPLPLEIGNLRVLVQIDLS 249 (599)
Q Consensus 173 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls 249 (599)
++|++++|.+ .++ .+|..+..+++|++|++++|. +++..+..+..+++|+.|+++
T Consensus 198 ~~L~l~~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 198 TQLNLSGYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp CEEECCSCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CEEEeCCCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 4554444421 222 233334445555555555555 444444455555555555555
Q ss_pred CCc-cCCCCCccccCcccccccccccccccccCcccccCC-CCcccccCCCCcccccCCchhh
Q 042902 250 MNN-FSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGL-IDLKSLDLSNNNISGAIPISLE 310 (599)
Q Consensus 250 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~ 310 (599)
+|. +.......++.+++|++|++++| ++. ..+..+ ..++.|++++|++++..|..+.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 553 22111123555556666666655 221 222222 2355555666666666655544
No 334
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.92 E-value=6.3e-25 Score=225.73 Aligned_cols=163 Identities=21% Similarity=0.304 Sum_probs=137.0
Q ss_pred hCCCCcCceecccccceEEEEEec-CC-cEEEEEEecccccccHHHHHHHHHHHhcCCCCc------ceeEEEEEEcCCe
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DG-IEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN------LIKIISSCSNDDF 498 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~-~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~l~~~~~~~~~ 498 (599)
.++|...+.||+|+||.||+|... ++ +.||||+++.. ....+.+..|++++++++|++ ++.+.+++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 357899999999999999999875 34 78999999643 234567888999999997766 9999999999999
Q ss_pred eeEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeee----------------
Q 042902 499 KALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLL---------------- 561 (599)
Q Consensus 499 ~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill---------------- 561 (599)
.++||||+ +|++.+++.... ..+++..+..++.||++||+||| +.+|+||||||+|||+
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH---~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLH---ENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHH---TTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---HCCcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 567766665543 46899999999999999999999 8999999999999999
Q ss_pred ---cCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 562 ---DDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 562 ---~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
+.++.+||+|||+|+..... .....||+.|+||
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aP 208 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPP 208 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCH
T ss_pred ccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCC
Confidence 56789999999999864322 2345799999998
No 335
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.92 E-value=7.6e-25 Score=218.15 Aligned_cols=143 Identities=15% Similarity=0.073 Sum_probs=127.8
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEeccccc---ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEEE
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE---GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 503 (599)
++|...+.||+|+||.||+|++. +|+.||||++..... ...+.|.+|++++++++||||+++++++.+.+..|+||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 56889999999999999999976 489999999975532 33478999999999999999999999999999999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
||++|++|.+++... ....++.+|+.|+++||+||| +.+|+||||||+||+++.++.+||+++|...
T Consensus 111 e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~lH---~~givH~Dikp~NIll~~~g~~kl~~~~~~~ 177 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATMP 177 (286)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHH---HTTCCCCCCSGGGEEEETTSCEEECSCCCCT
T ss_pred EecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHHH---HCCCccCCCCcccEEEcCCCCEEEEeccccC
Confidence 999999999998653 355578899999999999999 8899999999999999999999999887654
No 336
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.92 E-value=1.7e-25 Score=241.80 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=119.9
Q ss_pred CcCceecccccceEEEEEecCCcEEEEEEeccccc--------ccHHHHHHHHHHHhcCCCCcceeEEEEEEcCCeeeEE
Q 042902 431 SENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYE--------GAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALV 502 (599)
Q Consensus 431 ~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~lv 502 (599)
...+.||+|+||.||+|.. .++.+|+|+...... ...++|.+|++++++++||||+++..++...+..|+|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3457899999999999955 478899998643311 1245689999999999999999777777777888999
Q ss_pred EEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCccCCcCC
Q 042902 503 LEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKPLLKED 582 (599)
Q Consensus 503 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~~~~~~ 582 (599)
|||+++|+|.+++.. +..++.|+++||.||| +.+|+||||||+|||++. .+||+|||+|+......
T Consensus 418 mE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~LH---~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~ 483 (540)
T 3en9_A 418 MSYINGKLAKDVIED---------NLDIAYKIGEIVGKLH---KNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDE 483 (540)
T ss_dssp EECCCSEEHHHHSTT---------CTHHHHHHHHHHHHHH---HTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHH
T ss_pred EECCCCCCHHHHHHH---------HHHHHHHHHHHHHHHH---HCcCccCCCCHHHEEECC--eEEEEECccCEECCCcc
Confidence 999999999999876 4579999999999999 899999999999999999 99999999999764322
Q ss_pred Cce-----eeecccCCccccCC
Q 042902 583 QSL-----TQTQTLATIGYMAP 599 (599)
Q Consensus 583 ~~~-----~~~~~~gt~~y~AP 599 (599)
... ......||+.||||
T Consensus 484 ~~~~~~~~~~~~~~GT~~y~AP 505 (540)
T 3en9_A 484 DKAVDLIVFKKAVLSTHHEKFD 505 (540)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccccchhhhhhhhcCCCCcCCH
Confidence 111 12356799999998
No 337
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=9.3e-27 Score=242.58 Aligned_cols=241 Identities=24% Similarity=0.273 Sum_probs=192.2
Q ss_pred ccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcC---CcccCccc--
Q 042902 68 SLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKL---NGSIPIAL-- 142 (599)
Q Consensus 68 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~-- 142 (599)
.+..+++|++|+|++|.|+...+.++ +..|..+++|++|+|++|.+ ++.+|..+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l---------------------~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWL---------------------SENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHH---------------------HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHH---------------------HHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 45566677777777777664332222 23466789999999999654 44445444
Q ss_pred -----cCCCCCCEEEcccccccc----cCChhhhcCCCCcEEEeeCCccCCCCCcccCC----C---------CCCcEee
Q 042902 143 -----DKLQKLQLLSLEDNQLEG----SIPDDLCRLAALFLLDLGGNKLSGFVPACFGN----L---------TSLRNLY 200 (599)
Q Consensus 143 -----~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----l---------~~L~~L~ 200 (599)
..+++|++|+|++|.+.+ .+|..+..+++|++|+|++|.+++..+..+.. + ++|++|+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 789999999999999997 47778899999999999999997554444433 3 8999999
Q ss_pred cCCCCCC--CCC---ccccCCCcccEEeecCCCccc-----cCcccccccccccEEEccCCccC----CCCCccccCccc
Q 042902 201 LGSNQLT--SIP---STLWNLKYILYLNLSSNSFTG-----PLPLEIGNLRVLVQIDLSMNNFS----GFIPTTIGDLKD 266 (599)
Q Consensus 201 L~~N~l~--~ip---~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~ 266 (599)
|++|+++ .+| ..+..+++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 9999997 445 456678999999999999983 34457889999999999999996 567788999999
Q ss_pred cccccccccccccc----Cccccc--CCCCcccccCCCCcccc----cCCchh-hccccceEEEcccccCcccC
Q 042902 267 LQYLFLEYNRLQGS----IPDSIG--GLIDLKSLDLSNNNISG----AIPISL-EKLLDLKYINVSFNKLEGEI 329 (599)
Q Consensus 267 L~~L~L~~N~l~~~----~~~~~~--~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~l~l~~N~l~~~~ 329 (599)
|++|+|++|++++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999999999876 566663 48999999999999997 477777 66899999999999998654
No 338
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.91 E-value=2.9e-24 Score=220.47 Aligned_cols=236 Identities=17% Similarity=0.161 Sum_probs=190.5
Q ss_pred cCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcc-cCCCcccccccCCCCCCcE-EEc
Q 042902 3 LWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTS-STPKLNFLSSLSNCKYLKY-LSF 80 (599)
Q Consensus 3 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~l~~L~~-L~L 80 (599)
-++|+++ .+|..+. +++++|+|++|+|+.+.+++|+++++|++|+|++|++.+ +++. +|.++++|++ +++
T Consensus 16 C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~-----~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 16 CQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPKLHEIRIE 87 (350)
T ss_dssp EESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT-----SBCSCTTCCEEEEE
T ss_pred ecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh-----Hhhcchhhhhhhcc
Confidence 4678888 6788774 689999999999999888999999999999999999865 4543 6899998775 677
Q ss_pred ccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccC-CcCCcccCccccCCC-CCCEEEcccccc
Q 042902 81 SNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGG-NKLNGSIPIALDKLQ-KLQLLSLEDNQL 158 (599)
Q Consensus 81 s~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l 158 (599)
++|+|+.+.|++|..++ .|+.|++++|++....+..+....++..|++.+ |++..+.+.+|..+. .++.|+|++|+|
T Consensus 88 ~~N~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 78999999999999997 599999999999988888888888999999976 678888888888875 689999999999
Q ss_pred cccCChhhhcCCCCcEEEee-CCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccc
Q 042902 159 EGSIPDDLCRLAALFLLDLG-GNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEI 237 (599)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 237 (599)
+.+.+..| ...+|+.|+++ +|.++.+.+++|+++++|++|+|++|+|+.+|... +.+|+.|.+.++.--...| .+
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCC-CT
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCC-Cc
Confidence 96655555 45689999997 47888777788999999999999999999998642 3455555554443222444 46
Q ss_pred cccccccEEEccCC
Q 042902 238 GNLRVLVQIDLSMN 251 (599)
Q Consensus 238 ~~l~~L~~L~Ls~N 251 (599)
.++++|+.++++++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 67777787777654
No 339
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=4.1e-24 Score=208.68 Aligned_cols=180 Identities=24% Similarity=0.285 Sum_probs=132.9
Q ss_pred CCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeec
Q 042902 122 TNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYL 201 (599)
Q Consensus 122 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 201 (599)
.+.++++++++.++.+ |..+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567888888888854 43333 57888888888888777778888888888888888888877777888888888888
Q ss_pred CCCCCCCCCc-cccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccccccc
Q 042902 202 GSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGS 280 (599)
Q Consensus 202 ~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 280 (599)
++|+++.+|. .+..+++|++|+|++|++++..+..|..+++|+.|+|++|.|++..+..|+.+++|++|+|++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 8888887764 456677777777777777766666677777777777777777766666677777777777777777766
Q ss_pred CcccccCCCCcccccCCCCccccc
Q 042902 281 IPDSIGGLIDLKSLDLSNNNISGA 304 (599)
Q Consensus 281 ~~~~~~~l~~L~~L~L~~N~l~~~ 304 (599)
.+..|..+++|+.|+|++|++++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666666666666666666666644
No 340
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.91 E-value=5e-25 Score=228.30 Aligned_cols=163 Identities=20% Similarity=0.316 Sum_probs=137.1
Q ss_pred hCCCCcCceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC-----------CCcceeEEEEEE
Q 042902 427 TNGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-----------HRNLIKIISSCS 494 (599)
Q Consensus 427 ~~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-----------h~niv~l~~~~~ 494 (599)
.++|...+.||+|+||.||+|+.. +++.||||++.... ...+.+..|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 357889999999999999999964 68999999996432 33567888999999886 899999999987
Q ss_pred cCC----eeeEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCC-CeEEccCCCCCeeec------
Q 042902 495 NDD----FKALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSV-PIIHCDLKPNNVLLD------ 562 (599)
Q Consensus 495 ~~~----~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~-~iiH~dlk~~Nill~------ 562 (599)
..+ ..++||||+ +++|.+++.... ..+++..+..++.||+.||+||| +. +|+||||||+|||++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH---~~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMH---RRCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHH---HTTCEECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH---hcCCEEecCCChHHeEEeccCCCc
Confidence 654 789999999 899999987643 35889999999999999999999 77 999999999999994
Q ss_pred CCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 563 DNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 563 ~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
..+.+||+|||+|+..... .....||+.||||
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aP 204 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH-----YTNSIQTREYRSP 204 (373)
T ss_dssp TEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCH
T ss_pred CcceEEEcccccccccCCC-----CCCCCCCccccCc
Confidence 4458999999999865322 2345789999998
No 341
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=7.2e-26 Score=231.16 Aligned_cols=251 Identities=22% Similarity=0.227 Sum_probs=198.9
Q ss_pred CCcEEEcccCcccccCChhhhcc-cccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcc-cCccccCCCCCCEE
Q 042902 74 YLKYLSFSNNSLDGILPRAIGNL-SQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGS-IPIALDKLQKLQLL 151 (599)
Q Consensus 74 ~L~~L~Ls~N~i~~~~~~~~~~l-~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 151 (599)
.++.+|+++|.+. +..+..+ ...++.+++.+|.+.+..+. +..+++|++|+|++|.+++. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677777777765 4455544 13577788888887776655 45789999999999998865 77778899999999
Q ss_pred EcccccccccCChhhhcCCCCcEEEeeCC-ccCCC-CCcccCCCCCCcEeecCCC-CCCC--CCccccCCC-cccEEeec
Q 042902 152 SLEDNQLEGSIPDDLCRLAALFLLDLGGN-KLSGF-VPACFGNLTSLRNLYLGSN-QLTS--IPSTLWNLK-YILYLNLS 225 (599)
Q Consensus 152 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~l~-~L~~L~Ls 225 (599)
+|++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999998888888999999999999999 67652 4566788999999999999 8884 677778899 99999999
Q ss_pred CC--Ccc-ccCcccccccccccEEEccCCc-cCCCCCccccCccccccccccccc-ccccCcccccCCCCcccccCCCCc
Q 042902 226 SN--SFT-GPLPLEIGNLRVLVQIDLSMNN-FSGFIPTTIGDLKDLQYLFLEYNR-LQGSIPDSIGGLIDLKSLDLSNNN 300 (599)
Q Consensus 226 ~N--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 300 (599)
+| .++ +..+..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 455 3456677889999999999999 777778889999999999999995 33222336888999999999999
Q ss_pred ccccCCchhhccc-cceEEEcccccCcccCCCC
Q 042902 301 ISGAIPISLEKLL-DLKYINVSFNKLEGEIPRE 332 (599)
Q Consensus 301 l~~~~p~~~~~l~-~L~~l~l~~N~l~~~~p~~ 332 (599)
++ ...+..+. .++.|++++|++++..|..
T Consensus 283 i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 44 23344442 3667779999999888753
No 342
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=8e-24 Score=206.64 Aligned_cols=178 Identities=26% Similarity=0.294 Sum_probs=117.5
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
.+.++++++.++. +|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.|++..+..|..+++|++|+|++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4556666666663 333332 4666777777777666666666677777777777777666666666667777777777
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCCCcc-ccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCC
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSIPST-LWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIP 258 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 258 (599)
|+++++.+..|..+++|++|+|++|+|+.+|.. +..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 777666666666667777777777777666553 4556667777777777766666566666777777777777766666
Q ss_pred ccccCccccccccccccccccc
Q 042902 259 TTIGDLKDLQYLFLEYNRLQGS 280 (599)
Q Consensus 259 ~~~~~l~~L~~L~L~~N~l~~~ 280 (599)
..|..+++|++|+|++|+++..
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 6666667777777777766543
No 343
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=1.2e-26 Score=255.65 Aligned_cols=228 Identities=16% Similarity=0.137 Sum_probs=125.5
Q ss_pred cCCCCCCEEEccCcccccc----CCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChh
Q 042902 17 FNASKLSRLELEMNSFYGF----IPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRA 92 (599)
Q Consensus 17 ~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~ 92 (599)
.++++|++|+|++|.+++. ++..+..+++|++|+|++|.++.+... .+...+.++++|++|++++|.+.+ .|..
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~~~~-l~~~ 238 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK-DLETIARNCRSLVSVKVGDFEILE-LVGF 238 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH-HHHHHHHHCTTCCEEECSSCBGGG-GHHH
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH-HHHHHHhhCCCCcEEeccCccHHH-HHHH
Confidence 4678999999999998775 333456789999999999988744321 112245678899999999999886 5577
Q ss_pred hhcccccceEEEccCCccc---ccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCC-hhhhc
Q 042902 93 IGNLSQSMEVFFMFNCNIS---GSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIP-DDLCR 168 (599)
Q Consensus 93 ~~~l~~~l~~l~l~~n~i~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~ 168 (599)
+..++ .|+.+.++.+... ...+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+.+... ..+..
T Consensus 239 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 239 FKAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316 (592)
T ss_dssp HHHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred Hhhhh-HHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence 77775 4888888653322 222334455555555555554322 334445555555555555555443222 22344
Q ss_pred CCCCcEEEeeCCccCC-CCCcccCCCCCCcEeecCC-----------CCCCC--CCccccCCCcccEEeecCCCccccCc
Q 042902 169 LAALFLLDLGGNKLSG-FVPACFGNLTSLRNLYLGS-----------NQLTS--IPSTLWNLKYILYLNLSSNSFTGPLP 234 (599)
Q Consensus 169 l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~-----------N~l~~--ip~~~~~l~~L~~L~Ls~N~l~~~~~ 234 (599)
+++|+.|+++ |.+.+ ..+..+..+++|++|++++ |.++. ++.....+++|++|+++.|.+++..+
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 5555555555 22221 1122223345555555552 33331 11112234455555555555544333
Q ss_pred ccccc-cccccEEEcc
Q 042902 235 LEIGN-LRVLVQIDLS 249 (599)
Q Consensus 235 ~~~~~-l~~L~~L~Ls 249 (599)
..+.. +++|+.|+++
T Consensus 396 ~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHCCSCCEEEEE
T ss_pred HHHHhhCCCCcEEEEe
Confidence 33332 4445555553
No 344
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.91 E-value=5.2e-24 Score=213.68 Aligned_cols=144 Identities=23% Similarity=0.371 Sum_probs=125.6
Q ss_pred CCCCcC-ceecccccceEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHH-hcCCCCcceeEEEEEEc----CCeee
Q 042902 428 NGFSEN-NLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMM-KRIRHRNLIKIISSCSN----DDFKA 500 (599)
Q Consensus 428 ~~~~~~-~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l-~~l~h~niv~l~~~~~~----~~~~~ 500 (599)
++|... +.||+|+||.||+|... +++.||||+++. ...+.+|++++ +..+||||+++++++.. .+..+
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 91 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 91 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence 456665 78999999999999874 689999999853 24567888887 55689999999999876 66789
Q ss_pred EEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecC---CCcEEEccccCCc
Q 042902 501 LVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDD---NMVAHLSDFGMAK 576 (599)
Q Consensus 501 lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~---~~~~kl~DFGla~ 576 (599)
+||||+++|+|.+++.... ..+++..+..++.|++.||.||| +.+|+||||||+||+++. ++.+||+|||+|+
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH---~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~ 168 (299)
T 3m2w_A 92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168 (299)
T ss_dssp EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHH---HTTEECCCCSGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcccCCCCHHHEEEecCCCCCcEEEecccccc
Confidence 9999999999999998754 35899999999999999999999 889999999999999997 7899999999998
Q ss_pred cCC
Q 042902 577 PLL 579 (599)
Q Consensus 577 ~~~ 579 (599)
...
T Consensus 169 ~~~ 171 (299)
T 3m2w_A 169 ETT 171 (299)
T ss_dssp ECT
T ss_pred ccc
Confidence 654
No 345
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=1.1e-25 Score=248.00 Aligned_cols=321 Identities=15% Similarity=0.065 Sum_probs=195.8
Q ss_pred CccCCCcCccCCCCCCcCC--CCCCEEEccCcc-cccc-CCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCc
Q 042902 1 LLLWGNNFSGTIPSFIFNA--SKLSRLELEMNS-FYGF-IPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLK 76 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~ 76 (599)
|+|++|.+++..+..+... .+|++|+|++|. ++.. .+..+.++++|++|+|++|.+++....+ ....+..+++|+
T Consensus 117 L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~~~~L~ 195 (592)
T 3ogk_B 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW-LHELAQHNTSLE 195 (592)
T ss_dssp EEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-HHHHHHHCCCCC
T ss_pred EEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-HHHHHhcCCCcc
Confidence 4567777766655555553 348888888776 2211 1222347788888888888776543210 111345677888
Q ss_pred EEEcccCcccccC----ChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCC---cccCccccCCCCCC
Q 042902 77 YLSFSNNSLDGIL----PRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLN---GSIPIALDKLQKLQ 149 (599)
Q Consensus 77 ~L~Ls~N~i~~~~----~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~ 149 (599)
+|+|++|.+++.. +..+.+++ .|+.|++++|.+.+ .+..+.++++|++|+++++... ...+..+..+++|+
T Consensus 196 ~L~L~~n~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 196 VLNFYMTEFAKISPKDLETIARNCR-SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp EEECTTCCCSSCCHHHHHHHHHHCT-TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred EEEeeccCCCccCHHHHHHHHhhCC-CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 8888888886333 33334444 58888888888775 5577788888888888754322 22334566778888
Q ss_pred EEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCC-cccCCCCCCcEeecCCCCCC--CCCccccCCCcccEEeec-
Q 042902 150 LLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVP-ACFGNLTSLRNLYLGSNQLT--SIPSTLWNLKYILYLNLS- 225 (599)
Q Consensus 150 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~Ls- 225 (599)
.|+++++... .+|..+..+++|++|+|++|.+++... ..+..+++|++|+++ +.+. .++.....+++|++|+++
T Consensus 274 ~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 274 RLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp EEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence 8888876443 566677778888888888888654332 335778888888888 4444 233334457778888888
Q ss_pred ----------CCCccccCccc-ccccccccEEEccCCccCCCCCccccC-cccccccccc----ccccccc-----Cccc
Q 042902 226 ----------SNSFTGPLPLE-IGNLRVLVQIDLSMNNFSGFIPTTIGD-LKDLQYLFLE----YNRLQGS-----IPDS 284 (599)
Q Consensus 226 ----------~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~ 284 (599)
.|.+++..... +..+++|+.|+++.|.+++..+..++. +++|+.|+++ .|.+++. ++..
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 35665432222 345778888888888877655555554 6677777775 4556543 2222
Q ss_pred ccCCCCcccccCCCC--cccccCCchhhc-cccceEEEcccccCc
Q 042902 285 IGGLIDLKSLDLSNN--NISGAIPISLEK-LLDLKYINVSFNKLE 326 (599)
Q Consensus 285 ~~~l~~L~~L~L~~N--~l~~~~p~~~~~-l~~L~~l~l~~N~l~ 326 (599)
+..+++|+.|++++| .+++..+..+.. +++|++|++++|+++
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 476 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence 444555555555432 233333333322 444555555555544
No 346
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.89 E-value=1.7e-23 Score=207.50 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=113.7
Q ss_pred HHHHhCCCCcCceecccccceEEEEEecCCcEEEEEEeccccc------------------ccHHHHHHHHHHHhcCCCC
Q 042902 423 LFQATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYE------------------GAFKSFDIECDMMKRIRHR 484 (599)
Q Consensus 423 ~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~e~~~l~~l~h~ 484 (599)
+......|...+.||+|+||.||+|.+.+|+.||||+++.... ....++.+|++++++++|
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~- 163 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG- 163 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT-
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC-
Confidence 3344556667799999999999999997799999999864321 134678999999999994
Q ss_pred cceeEEEEEEcCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCC
Q 042902 485 NLIKIISSCSNDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDN 564 (599)
Q Consensus 485 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~ 564 (599)
+++.+++.. +..++||||++||+|.+ +... ....++.|+++||.|+| +.+|+||||||+|||++ +
T Consensus 164 --~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~~-------~~~~i~~qi~~~l~~lH---~~giiHrDlkp~NILl~-~ 228 (282)
T 1zar_A 164 --LAVPKVYAW-EGNAVLMELIDAKELYR-VRVE-------NPDEVLDMILEEVAKFY---HRGIVHGDLSQYNVLVS-E 228 (282)
T ss_dssp --SSSCCEEEE-ETTEEEEECCCCEEGGG-CCCS-------CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEE-T
T ss_pred --CCcCeEEec-cceEEEEEecCCCcHHH-cchh-------hHHHHHHHHHHHHHHHH---HCCCEeCCCCHHHEEEE-C
Confidence 555554433 55699999999999998 4221 23469999999999999 89999999999999999 9
Q ss_pred CcEEEccccCCccCC
Q 042902 565 MVAHLSDFGMAKPLL 579 (599)
Q Consensus 565 ~~~kl~DFGla~~~~ 579 (599)
+.+||+|||+|+...
T Consensus 229 ~~vkl~DFG~a~~~~ 243 (282)
T 1zar_A 229 EGIWIIDFPQSVEVG 243 (282)
T ss_dssp TEEEECCCTTCEETT
T ss_pred CcEEEEECCCCeECC
Confidence 999999999998553
No 347
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.89 E-value=9.9e-24 Score=221.37 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=122.4
Q ss_pred CCCCcCceecccccceEEEEEec-CCcEEEEEEecccc---cccHHHHHHHHHHHhcCCC-Ccce---------------
Q 042902 428 NGFSENNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIRH-RNLI--------------- 487 (599)
Q Consensus 428 ~~~~~~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~h-~niv--------------- 487 (599)
..|...+.||+|+||.||+|++. +|+.||||++.... ....+.|.+|+.+++.++| +|..
T Consensus 78 ~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 157 (413)
T 3dzo_A 78 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLV 157 (413)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEE
T ss_pred eeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhc
Confidence 34667789999999999999955 69999999987432 2336789999999999987 2111
Q ss_pred ------eEEEEEEc-----CCeeeEEEEccCCCChhhhhh------cCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeE
Q 042902 488 ------KIISSCSN-----DDFKALVLEYMPHGSLEKCLY------SSNYILDIFQRLNIMIDVASALEYLHFGYSVPII 550 (599)
Q Consensus 488 ------~l~~~~~~-----~~~~~lv~e~~~~g~L~~~l~------~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ii 550 (599)
.+..++.. ....+++|+++ +|+|.+++. .....+++..+..++.||++||+||| +.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH---~~~ii 233 (413)
T 3dzo_A 158 KDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLH---HYGLV 233 (413)
T ss_dssp ECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHH---HTTEE
T ss_pred ccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHH---hCCcc
Confidence 11111111 12456777776 679998884 22345778889999999999999999 89999
Q ss_pred EccCCCCCeeecCCCcEEEccccCCccCCcCCCceeeecccCCccccCC
Q 042902 551 HCDLKPNNVLLDDNMVAHLSDFGMAKPLLKEDQSLTQTQTLATIGYMAP 599 (599)
Q Consensus 551 H~dlk~~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~AP 599 (599)
||||||+|||++.++.+||+|||+|+..... .....| +.||||
T Consensus 234 HrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aP 276 (413)
T 3dzo_A 234 HTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPP 276 (413)
T ss_dssp CSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCH
T ss_pred cCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCc
Confidence 9999999999999999999999999864321 344567 999998
No 348
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.1e-22 Score=188.66 Aligned_cols=161 Identities=27% Similarity=0.299 Sum_probs=98.5
Q ss_pred CCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeec
Q 042902 122 TNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYL 201 (599)
Q Consensus 122 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 201 (599)
++|++|+|++|.++++.+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++++.+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666555555666666666666666666555555566666666666666666555555666666666666
Q ss_pred CCCCCCCCCcc-ccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccccccc
Q 042902 202 GSNQLTSIPST-LWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGS 280 (599)
Q Consensus 202 ~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 280 (599)
++|+|+.+|.. +..+++|++|++++|.+++..+..|..+++|+.|+|++|.+.+ .+++|++|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 66666665543 4556666666666666665555556666666666666665543 234566666666666666
Q ss_pred CcccccCCC
Q 042902 281 IPDSIGGLI 289 (599)
Q Consensus 281 ~~~~~~~l~ 289 (599)
+|..++.++
T Consensus 181 ip~~~~~l~ 189 (208)
T 2o6s_A 181 VRNSAGSVA 189 (208)
T ss_dssp BBCTTSSBC
T ss_pred eeccCcccc
Confidence 666655543
No 349
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=3.9e-22 Score=188.80 Aligned_cols=160 Identities=28% Similarity=0.354 Sum_probs=115.9
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
++.|++++|++++..+..|.++++|++|+|++|+++++.+..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 33333444444434445566677777777777777776666677777788888888877766666677778888888888
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCCCcc-ccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCC
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSIPST-LWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIP 258 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 258 (599)
|+++++.+..|..+++|++|++++|+++.+|.. +..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence 888777777777788888888888888877654 5667888888888887764 34578888888888888888
Q ss_pred ccccCccc
Q 042902 259 TTIGDLKD 266 (599)
Q Consensus 259 ~~~~~l~~ 266 (599)
..++.++.
T Consensus 183 ~~~~~l~~ 190 (208)
T 2o6s_A 183 NSAGSVAP 190 (208)
T ss_dssp CTTSSBCT
T ss_pred ccCccccC
Confidence 88776654
No 350
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=2.3e-22 Score=217.35 Aligned_cols=145 Identities=24% Similarity=0.331 Sum_probs=71.1
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
|+.|++++|+|++ +|. +.+ +|++|+|++|.|+++ |. .+++|++|+|++|+|++ +|. .+++|+.|+|++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTML-PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCC-CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 4444444444443 222 332 555555555555542 22 34555555555555553 232 344555555555
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcc-------cEEeecCCCccccCcccccccccccEEEccCCc
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYI-------LYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNN 252 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 252 (599)
|+|++ +|. |. ++|+.|+|++|+|+.+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCc
Confidence 55554 222 33 555555555555555555 332 44 55555555555 244444445555555555555
Q ss_pred cCCCCCccccCc
Q 042902 253 FSGFIPTTIGDL 264 (599)
Q Consensus 253 l~~~~~~~~~~l 264 (599)
+++.+|..+..+
T Consensus 242 l~~~~p~~l~~l 253 (571)
T 3cvr_A 242 LSSRIRESLSQQ 253 (571)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 555555554443
No 351
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=8.4e-25 Score=241.01 Aligned_cols=342 Identities=14% Similarity=0.079 Sum_probs=199.9
Q ss_pred CccCCCcCccCCCCCCc-CCCCCCEEEccCc-ccccc-CCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcE
Q 042902 1 LLLWGNNFSGTIPSFIF-NASKLSRLELEMN-SFYGF-IPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKY 77 (599)
Q Consensus 1 L~L~~n~~~~~~~~~~~-~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~ 77 (599)
|+|++|.+++..+..+. .+++|++|+|++| .+++. .+..+.++++|++|+|++|.++...... +......+++|++
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-l~~~~~~~~~L~~ 188 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW-LSHFPDTYTSLVS 188 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG-GGGSCTTCCCCCE
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH-HHHHhhcCCcCcE
Confidence 35566666655555554 4667777777776 44432 2333346777777777777766543321 1112335667777
Q ss_pred EEcccCcccccCChhhhcc---cccceEEEccCC-cccccCCccccCCCCCCEEEccCCc--------------------
Q 042902 78 LSFSNNSLDGILPRAIGNL---SQSMEVFFMFNC-NISGSIPEEISNLTNLTTIYLGGNK-------------------- 133 (599)
Q Consensus 78 L~Ls~N~i~~~~~~~~~~l---~~~l~~l~l~~n-~i~~~~~~~~~~l~~L~~L~L~~N~-------------------- 133 (599)
|++++|. ..+.+..+..+ .+.|+.|++++| .+.+ .+..+.++++|++|+++.+.
T Consensus 189 L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 189 LNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp EECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred EEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 7777775 21222222222 135777777777 3333 45555566666666654431
Q ss_pred ------CCc----ccCccccCCCCCCEEEcccccccccCCh-hhhcCCCCcEEEeeCCccCCC-CCcccCCCCCCcEeec
Q 042902 134 ------LNG----SIPIALDKLQKLQLLSLEDNQLEGSIPD-DLCRLAALFLLDLGGNKLSGF-VPACFGNLTSLRNLYL 201 (599)
Q Consensus 134 ------l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 201 (599)
+.. .++..+..+++|++|+|++|.+.+.... .+..+++|+.|++++| +.+. .+.....+++|++|++
T Consensus 267 L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp CCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence 111 1222233568899999999887643222 3557888999999888 4322 1222235788888888
Q ss_pred CC---------CCCCCC-Cccc-cCCCcccEEeecCCCccccCccccc-ccccccEEEcc--C----CccCCCC-----C
Q 042902 202 GS---------NQLTSI-PSTL-WNLKYILYLNLSSNSFTGPLPLEIG-NLRVLVQIDLS--M----NNFSGFI-----P 258 (599)
Q Consensus 202 ~~---------N~l~~i-p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~~~~-----~ 258 (599)
++ +.++.. ...+ ..+++|+.|.++.|.+++.....+. .+++|+.|+|+ + |.+++.. +
T Consensus 346 ~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~ 425 (594)
T 2p1m_B 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425 (594)
T ss_dssp ECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHH
T ss_pred ecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHH
Confidence 33 344421 1112 2367888888888888765555554 47788888888 3 4555321 1
Q ss_pred ccccCcccccccccccccccccCcccccC-CCCcccccCCCCcccccCCchh-hccccceEEEcccccCcccCCC--CCC
Q 042902 259 TTIGDLKDLQYLFLEYNRLQGSIPDSIGG-LIDLKSLDLSNNNISGAIPISL-EKLLDLKYINVSFNKLEGEIPR--EGP 334 (599)
Q Consensus 259 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~p~--~~~ 334 (599)
..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++++..+. ...
T Consensus 426 ~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 426 AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp HHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred HHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 1255677888888876 566555555554 7778888888888766555444 5677888888888887543221 122
Q ss_pred CCCcccccccCCC
Q 042902 335 FRNFSAESFKGNE 347 (599)
Q Consensus 335 ~~~~~~~~~~~n~ 347 (599)
+.++...++.+|+
T Consensus 505 l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 505 LETMRSLWMSSCS 517 (594)
T ss_dssp GGGSSEEEEESSC
T ss_pred CCCCCEEeeeCCC
Confidence 3455555555543
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=3.1e-22 Score=216.29 Aligned_cols=147 Identities=28% Similarity=0.354 Sum_probs=65.5
Q ss_pred CCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeec
Q 042902 146 QKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLS 225 (599)
Q Consensus 146 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls 225 (599)
++|++|+|++|+|++ +|. +.. +|++|+|++|+|+++ |. .+++|+.|+|++|.|+.+|. .+++|+.|+|+
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTML-PE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVR 168 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCC-CC---cCccccEEeCCCCccCcCCC---cCCCcCEEECC
Confidence 444444444444443 222 222 444444444444432 22 23444444444444444443 23444444444
Q ss_pred CCCccccCcccccccccccEEEccCCccCCCCCccccCcccc-------cccccccccccccCcccccCCCCcccccCCC
Q 042902 226 SNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDL-------QYLFLEYNRLQGSIPDSIGGLIDLKSLDLSN 298 (599)
Q Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 298 (599)
+|.|++ +|. |. ++|+.|+|++|.|+. +|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCS
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeC
Confidence 444443 222 32 444555555555442 222 332 34 55555555555 3444444455555555555
Q ss_pred CcccccCCchhhcc
Q 042902 299 NNISGAIPISLEKL 312 (599)
Q Consensus 299 N~l~~~~p~~~~~l 312 (599)
|++++.+|..+..+
T Consensus 240 N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 240 NPLSSRIRESLSQQ 253 (571)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred CcCCCcCHHHHHHh
Confidence 55555555555444
No 353
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=3.2e-22 Score=199.59 Aligned_cols=189 Identities=28% Similarity=0.356 Sum_probs=93.2
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccce
Q 042902 22 LSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSME 101 (599)
Q Consensus 22 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~ 101 (599)
+..+.+..+.++++. .+..+++|++|++++|.++.++ .+..+++|++|+|++|+|+++.+ +
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~-------~~~~l~~L~~L~L~~n~l~~~~~--l-------- 86 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP--L-------- 86 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCT-------TGGGCTTCCEEECCSSCCCCCGG--G--------
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccCh-------hHhcCCCCCEEEccCCccCCCcc--c--------
Confidence 334455555555432 2455666666666666666553 25556666666666666664322 3
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCc
Q 042902 102 VFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNK 181 (599)
Q Consensus 102 ~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (599)
.++++|++|+|++|.+++. ..+..+++|++|+|++|++++. ..+..+++|+.|++++|+
T Consensus 87 -----------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 87 -----------------ANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNK 145 (291)
T ss_dssp -----------------TTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSC
T ss_pred -----------------ccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCc
Confidence 3344444444444444432 1244444444444444444432 234444444444444444
Q ss_pred cCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCC
Q 042902 182 LSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSG 255 (599)
Q Consensus 182 l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 255 (599)
+++. ..+..+++|++|++++|+++.++. +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 146 l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 146 ITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4433 334444455555555555544433 44445555555555555432 1 24455555555555555543
No 354
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.86 E-value=8.1e-22 Score=196.68 Aligned_cols=172 Identities=27% Similarity=0.362 Sum_probs=88.3
Q ss_pred cCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcE
Q 042902 119 SNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRN 198 (599)
Q Consensus 119 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 198 (599)
..+++|++|++++|.++.. + .+..+++|++|+|++|++++..+ +..+++|++|++++|++++. ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3455566666666665543 2 25555566666666666554332 55555555555555555542 22555555555
Q ss_pred eecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccccc
Q 042902 199 LYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQ 278 (599)
Q Consensus 199 L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 278 (599)
|++++|+++.++ .+..+++|+.|++++|.+++. .. +..+++|++|++++|+++
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~------------------------l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TV------------------------LSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GG------------------------GGGCTTCSEEECCSSCCC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hh------------------------hccCCCCCEEEccCCccc
Confidence 555555555542 344444555555555555433 33 444455555555555554
Q ss_pred ccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcc
Q 042902 279 GSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 279 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 327 (599)
+..+ +..+++|+.|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4333 44555555555555555532 2 25555555555555555543
No 355
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.86 E-value=1.4e-21 Score=213.41 Aligned_cols=191 Identities=25% Similarity=0.351 Sum_probs=108.0
Q ss_pred CCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhccccc
Q 042902 20 SKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQS 99 (599)
Q Consensus 20 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~ 99 (599)
..+..+.|..+.+.++.+ +..|++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+++.| +..++ .
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-------~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~ 88 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-------GIQYLPNVTKLFLNGNKLTDIKP--LTNLK-N 88 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-------TGGGCTTCCEEECTTSCCCCCGG--GGGCT-T
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-------HHccCCCCCEEEeeCCCCCCChh--hccCC-C
Confidence 345666777777776543 567788888888888887764 26777888888888888775543 44443 2
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
|+.|++++|.+.+. ..+..+++|++|+|++|.|+++ ..+..+++|+.|+|++|+|++. ..+..+++|+.|+|++
T Consensus 89 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 89 LGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 45555555544432 2455555555555555555542 2355555555555555555543 3455555555555555
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccc
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTG 231 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~ 231 (599)
|+|++..| +..+++|+.|+|++|+|+.+| .+..+++|+.|+|++|++++
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 55554433 445555555555555555443 24444445555555554443
No 356
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=3.9e-22 Score=190.42 Aligned_cols=155 Identities=23% Similarity=0.253 Sum_probs=110.0
Q ss_pred cEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc--cccCCCcccEEeecCCCccccCcccccccccccEEEccC
Q 042902 173 FLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS--TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSM 250 (599)
Q Consensus 173 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 250 (599)
+.+++++|.++.+ |..+. +.+++|+|++|+|+.++. .+..+++|++|+|++|.|+++.+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~i-P~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3566666666643 33332 345677777777776632 356677777777777777766666777777777777777
Q ss_pred CccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCC
Q 042902 251 NNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 251 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 330 (599)
|.+++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77777777777777777777777777777777777777778888888888877777777778888888888888877665
No 357
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.86 E-value=2.3e-21 Score=211.86 Aligned_cols=188 Identities=27% Similarity=0.378 Sum_probs=164.7
Q ss_pred ccCCCcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcc
Q 042902 2 LLWGNNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFS 81 (599)
Q Consensus 2 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 81 (599)
.|..+.++..++ +..+++|+.|+|++|.|..+ + .|..+++|+.|+|++|+|+.+++ +..+++|+.|+|+
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-------LTNLKNLGWLFLD 95 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-------GGGCTTCCEEECC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-------hccCCCCCEEECc
Confidence 456666765544 56789999999999999985 3 59999999999999999998764 7899999999999
Q ss_pred cCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEccccccccc
Q 042902 82 NNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGS 161 (599)
Q Consensus 82 ~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 161 (599)
+|.|+++ ..+..++ .|+.|++++|.+.+. ..+..+++|+.|+|++|.|+++ ..+..+++|+.|+|++|+|.+.
T Consensus 96 ~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCCC--TTSTTCT-TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCCC--hhhccCC-CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 9999864 3677776 599999999999974 5699999999999999999976 6789999999999999999977
Q ss_pred CChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc
Q 042902 162 IPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS 211 (599)
Q Consensus 162 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~ 211 (599)
.| +..+++|+.|+|++|+|+++ ..+..+++|+.|+|++|.+...|.
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 66 99999999999999999975 468999999999999999998764
No 358
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=1.9e-21 Score=200.31 Aligned_cols=155 Identities=26% Similarity=0.274 Sum_probs=105.4
Q ss_pred ceEEEccCCcccccCCcccc-CCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEee
Q 042902 100 MEVFFMFNCNISGSIPEEIS-NLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLG 178 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 178 (599)
++.|++++|+|++..+..|. ++++|++|+|++|+|+++.+.+|.++++|++|+|++|+|+.+.+..|..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44555555555555555565 67777777777777777777777777777777777777777766677777777777777
Q ss_pred CCccCCCCCcccCCCCCCcEeecCCCCCCCCCccc----cCCCcccEEeecCCCccccCccccccccc--ccEEEccCCc
Q 042902 179 GNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTL----WNLKYILYLNLSSNSFTGPLPLEIGNLRV--LVQIDLSMNN 252 (599)
Q Consensus 179 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~Ls~N~ 252 (599)
+|+|+++.+..|.++++|++|+|++|+|+.+|..+ ..+++|+.|+|++|+|++..+..|..++. ++.|+|++|.
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 77777777777777777888888777777777644 34566666666666666555455555554 2555555555
Q ss_pred cC
Q 042902 253 FS 254 (599)
Q Consensus 253 l~ 254 (599)
+.
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 359
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=7.7e-22 Score=188.35 Aligned_cols=153 Identities=21% Similarity=0.297 Sum_probs=90.5
Q ss_pred EEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCccccCcccccccccccEEEccCCc
Q 042902 174 LLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNN 252 (599)
Q Consensus 174 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 252 (599)
.+++++|.++.+ |..+. ++|+.|++++|.|+.+|. .+..+++|++|+|++|.+++..|..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 444555555432 22221 345555555555555543 44555556666666666655555666666666666666666
Q ss_pred cCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccC
Q 042902 253 FSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEI 329 (599)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 329 (599)
|+.+.+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.|..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 66555555666666666666666666666666666666666666666666665556666666666666666666544
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=2.9e-21 Score=198.95 Aligned_cols=177 Identities=23% Similarity=0.219 Sum_probs=146.6
Q ss_pred CCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccC-CCCCCcEEEcccCcccccCChhhhcccccc
Q 042902 22 LSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLS-NCKYLKYLSFSNNSLDGILPRAIGNLSQSM 100 (599)
Q Consensus 22 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l 100 (599)
-+.+++++|+++.+ |..+. ..++.|+|++|+|+.+++. .|. ++++|++|+|++|+|+++.+.+|..++ .|
T Consensus 20 ~~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~-----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L 90 (361)
T 2xot_A 20 SNILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAE-----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NL 90 (361)
T ss_dssp TTEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTT-----SSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TC
T ss_pred CCEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChh-----hhhhcccccCEEECCCCcCCccChhhccCCC-CC
Confidence 36788888888874 44443 4578888888888888765 466 788888888888888888888888886 48
Q ss_pred eEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhh---hcCCCCcEEEe
Q 042902 101 EVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDL---CRLAALFLLDL 177 (599)
Q Consensus 101 ~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L 177 (599)
+.|++++|+|+.+.+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++|+|+.+.+..| ..+++|+.|+|
T Consensus 91 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 888888888888888889999999999999999998888999999999999999999997665556 56899999999
Q ss_pred eCCccCCCCCcccCCCCC--CcEeecCCCCCC
Q 042902 178 GGNKLSGFVPACFGNLTS--LRNLYLGSNQLT 207 (599)
Q Consensus 178 s~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~ 207 (599)
++|+|+++.+..|..++. |+.|+|++|.+.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 999999887788888887 488999999886
No 361
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.1e-23 Score=228.46 Aligned_cols=321 Identities=16% Similarity=0.118 Sum_probs=220.5
Q ss_pred CccCCC-cCccC-CCCCCcCCCCCCEEEccCccccccCCcccc----CCCCCCEEeccCccCcccCCCcccccccCCCCC
Q 042902 1 LLLWGN-NFSGT-IPSFIFNASKLSRLELEMNSFYGFIPNTFG----NLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKY 74 (599)
Q Consensus 1 L~L~~n-~~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~ 74 (599)
|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|+|++|. ..+... .+......+++
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~-~l~~l~~~~~~ 212 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFS-ALERLVTRCPN 212 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHH-HHHHHHHHCTT
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHH-HHHHHHHhCCC
Confidence 456666 44432 344445789999999999998876555554 66799999999987 222211 01112345789
Q ss_pred CcEEEcccC-cccccCChhhhcccccceEEEccCCc--------------------------cc----ccCCccccCCCC
Q 042902 75 LKYLSFSNN-SLDGILPRAIGNLSQSMEVFFMFNCN--------------------------IS----GSIPEEISNLTN 123 (599)
Q Consensus 75 L~~L~Ls~N-~i~~~~~~~~~~l~~~l~~l~l~~n~--------------------------i~----~~~~~~~~~l~~ 123 (599)
|++|++++| .+++ ++..+..++ .|+.|.+..+. +. ...+..+..+++
T Consensus 213 L~~L~L~~~~~~~~-l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 213 LKSLKLNRAVPLEK-LATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290 (594)
T ss_dssp CCEEECCTTSCHHH-HHHHHHHCT-TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT
T ss_pred CcEEecCCCCcHHH-HHHHHhcCC-cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC
Confidence 999999988 4443 556666665 47777654431 11 123333346799
Q ss_pred CCEEEccCCcCCcccC-ccccCCCCCCEEEccccccccc-CChhhhcCCCCcEEEeeC---------CccCCCCCccc-C
Q 042902 124 LTTIYLGGNKLNGSIP-IALDKLQKLQLLSLEDNQLEGS-IPDDLCRLAALFLLDLGG---------NKLSGFVPACF-G 191 (599)
Q Consensus 124 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~---------N~l~~~~~~~~-~ 191 (599)
|++|+|++|.++.... ..+..+++|++|++++| +.+. .+.....+++|+.|++++ +.+++.....+ .
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 9999999999774332 23568899999999998 5432 222334589999999954 44543322223 2
Q ss_pred CCCCCcEeecCCCCCCCC-Ccccc-CCCcccEEeec--C----CCccccC-----cccccccccccEEEccCCccCCCCC
Q 042902 192 NLTSLRNLYLGSNQLTSI-PSTLW-NLKYILYLNLS--S----NSFTGPL-----PLEIGNLRVLVQIDLSMNNFSGFIP 258 (599)
Q Consensus 192 ~l~~L~~L~L~~N~l~~i-p~~~~-~l~~L~~L~Ls--~----N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~ 258 (599)
.+++|++|.++.|.++.. +..+. .+++|+.|+++ + |.+++.. +..+..+++|+.|+|++ .+++..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 478999999999998843 22333 57899999999 4 5666322 12256788999999987 6766555
Q ss_pred ccccC-cccccccccccccccccCcccc-cCCCCcccccCCCCcccccCCc-hhhccccceEEEcccccCcc
Q 042902 259 TTIGD-LKDLQYLFLEYNRLQGSIPDSI-GGLIDLKSLDLSNNNISGAIPI-SLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 259 ~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~l~l~~N~l~~ 327 (599)
..++. +++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|+.|++++|+++.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 55655 8899999999999977655555 6789999999999999755444 33458999999999999853
No 362
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=2.2e-20 Score=178.17 Aligned_cols=129 Identities=27% Similarity=0.285 Sum_probs=72.8
Q ss_pred EEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCc
Q 042902 102 VFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNK 181 (599)
Q Consensus 102 ~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 181 (599)
.|++++|+|+++.+..|.++++|++|+|++|+|+++.|.+|.++++|++|+|++|+|+.+.+..|..+++|++|+|++|+
T Consensus 36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 33333333333334445555555555555555555555555555555555555555554444445555666666666666
Q ss_pred cCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCcc
Q 042902 182 LSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFT 230 (599)
Q Consensus 182 l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~ 230 (599)
|+++.+..|..+++|++|+|++|+|+.++. .+..+++|+.|+|++|.+.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 665555566666666666666666665544 3555666666666666665
No 363
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=177.38 Aligned_cols=113 Identities=27% Similarity=0.317 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCc
Q 042902 118 ISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLR 197 (599)
Q Consensus 118 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 197 (599)
|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|+|++..+..|..+++|++|+|++|+|+++.|..|..+++|+
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 44555555555555555555555555555555555555555544444455555555555555555554444555555555
Q ss_pred EeecCCCCCCCC-CccccCCCcccEEeecCCCcc
Q 042902 198 NLYLGSNQLTSI-PSTLWNLKYILYLNLSSNSFT 230 (599)
Q Consensus 198 ~L~L~~N~l~~i-p~~~~~l~~L~~L~Ls~N~l~ 230 (599)
+|+|++|+|+.+ |..+..+++|+.|+|++|.+.
T Consensus 133 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 133 LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555555444444 233444444444444444443
No 364
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=6.8e-21 Score=186.96 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=101.4
Q ss_pred ceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeC
Q 042902 100 MEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGG 179 (599)
Q Consensus 100 l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 179 (599)
+..+.+.+|.+++.. .+..+++|++|++++|.++.+ + .+..+++|++|+|++|+|++..+ +..+++|+.|+|++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334455555555332 355566666666666666643 2 46666666666666666665433 66666666666666
Q ss_pred CccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCc
Q 042902 180 NKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPT 259 (599)
Q Consensus 180 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 259 (599)
|+++++.+ +.. ++|++|++++|+++.++ .+..+++|+.|++++|++++. + .+..+++|+.|+|++|.+++. .
T Consensus 95 N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 95 NRLKNLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp SCCSCCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred CccCCcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 66665432 222 66666666666666654 355666666666666666654 2 466666666666666666654 4
Q ss_pred cccCccccccccccccccccc
Q 042902 260 TIGDLKDLQYLFLEYNRLQGS 280 (599)
Q Consensus 260 ~~~~l~~L~~L~L~~N~l~~~ 280 (599)
.+..+++|+.|++++|++++.
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECC
T ss_pred HhccCCCCCEEeCCCCcccCC
Confidence 566666666666666666644
No 365
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=5.2e-20 Score=176.80 Aligned_cols=133 Identities=29% Similarity=0.360 Sum_probs=83.4
Q ss_pred CCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeec
Q 042902 122 TNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYL 201 (599)
Q Consensus 122 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 201 (599)
++|++|+|++|.|+++.|..|..+++|++|+|++|+|+.+.+..|..+++|++|+|++|+|+++.+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 55666666666666666666666666666666666666555555666666666666666666665566666666666666
Q ss_pred CCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccC
Q 042902 202 GSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFS 254 (599)
Q Consensus 202 ~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 254 (599)
++|+|+.+|..+..+++|+.|+|++|+|++..+..|..+++|+.|+|++|.+.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666666666666666666666666666555555555555555555555554
No 366
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=2.4e-21 Score=190.16 Aligned_cols=170 Identities=19% Similarity=0.277 Sum_probs=118.7
Q ss_pred CCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEe
Q 042902 120 NLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNL 199 (599)
Q Consensus 120 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 199 (599)
++.+++.+++++|.++++. .+..+++|++|++++|.|+.. + .+..+++|+.|+|++|++++..+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4566778888888888654 577888888888888888743 4 67888888888888888887654 7888888888
Q ss_pred ecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccc
Q 042902 200 YLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQG 279 (599)
Q Consensus 200 ~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 279 (599)
+|++|+++.+|.... ++|++|++++|++++. ..+..+++|+.|+|++|++++. + .++.+++|++|+|++|++++
T Consensus 91 ~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 888888888765333 6777777777777753 2466667777777777776654 2 45566666666666666654
Q ss_pred cCcccccCCCCcccccCCCCcccc
Q 042902 280 SIPDSIGGLIDLKSLDLSNNNISG 303 (599)
Q Consensus 280 ~~~~~~~~l~~L~~L~L~~N~l~~ 303 (599)
. ..+..+++|+.|++++|.+++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 4 445555555555555555553
No 367
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=4.7e-21 Score=214.51 Aligned_cols=143 Identities=22% Similarity=0.261 Sum_probs=74.9
Q ss_pred cCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCC
Q 042902 113 SIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGN 192 (599)
Q Consensus 113 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 192 (599)
..++.|..+++|+.|+|++|.+.. +|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 445556666666666666666663 3333445666666666666666 45555666666666666666665 33555555
Q ss_pred CCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccccccc-ccEEEccCCccCCCCC
Q 042902 193 LTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRV-LVQIDLSMNNFSGFIP 258 (599)
Q Consensus 193 l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~ 258 (599)
+++|++|+|++|.|+.+|..|..+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 66666666666666555555555555555555555555555544433211 1223444444444433
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.82 E-value=5.4e-23 Score=223.38 Aligned_cols=217 Identities=22% Similarity=0.153 Sum_probs=110.6
Q ss_pred CCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCC
Q 042902 70 SNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQ 149 (599)
Q Consensus 70 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 149 (599)
..+++|+.|+|++|.|+ .+|..++.+++ |+.|++++|......|.. +..+.+.+..|..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 45667777777777776 45667776653 666666554311111100 001112334445555555555
Q ss_pred EEE-cccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCC
Q 042902 150 LLS-LEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNS 228 (599)
Q Consensus 150 ~L~-L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~ 228 (599)
.|+ ++.|.+. +|..+.+++|.++.+.+ ..|+.|+|++|.|+.+|. +..+++|+.|+|++|.
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC-ccccccCcEeecCccc
Confidence 555 4444332 12222333344332211 124555555555555554 4555555555555555
Q ss_pred ccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccC-cccccCCCCcccccCCCCcccccCCc
Q 042902 229 FTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSI-PDSIGGLIDLKSLDLSNNNISGAIPI 307 (599)
Q Consensus 229 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~p~ 307 (599)
|+ .+|..|+++++|+.|+|++|.|++ +| .++.+++|++|+|++|+|++.. |..++.+++|+.|+|++|++++.+|.
T Consensus 475 l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 475 LR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred cc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 55 344455555555555555555554 23 4555556666666666665554 55566666666666666666654432
Q ss_pred h---hhccccceEEEc
Q 042902 308 S---LEKLLDLKYINV 320 (599)
Q Consensus 308 ~---~~~l~~L~~l~l 320 (599)
. +..+++|+.|++
T Consensus 552 ~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QERLAEMLPSVSSILT 567 (567)
T ss_dssp TTHHHHHCTTCSEEEC
T ss_pred HHHHHHHCcccCccCC
Confidence 1 233566666653
No 369
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=3.6e-21 Score=215.48 Aligned_cols=227 Identities=22% Similarity=0.222 Sum_probs=124.3
Q ss_pred CCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEE
Q 042902 73 KYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLS 152 (599)
Q Consensus 73 ~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 152 (599)
+.++.|+|++|.+... +.. .++.+.|++|.|. .++++.|++. ..+..|..+++|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~------~l~~l~Ls~~~i~--------------~~~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA------LLQHKKLSQYSID--------------EDDDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCcc-hhh------HhhcCccCccccc--------------Ccccccccee-cChhhhccCCCCcEEE
Confidence 4567777777777643 211 2444555554443 3456667776 6778899999999999
Q ss_pred cccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCcccc
Q 042902 153 LEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGP 232 (599)
Q Consensus 153 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~ 232 (599)
|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|+|++|.|+.+|..+..+++|++|+|++|.|+ .
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-C
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-c
Confidence 9999998 56777779999999999999999 6678889999999999999999999999999999999999999998 5
Q ss_pred CcccccccccccEEEccCCccCCCCCccccCccc-ccccccccccccccCcccccCCCCcccccCCCC--------cccc
Q 042902 233 LPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKD-LQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNN--------NISG 303 (599)
Q Consensus 233 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--------~l~~ 303 (599)
+|..|+.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|. .|+.|+++.| .+.+
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~ 381 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQ 381 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccc
Confidence 6777999999999999999999888888766533 34588999999988876 4556667766 4555
Q ss_pred cCCchhhccccceEEEcccccCcccCC
Q 042902 304 AIPISLEKLLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 304 ~~p~~~~~l~~L~~l~l~~N~l~~~~p 330 (599)
..+..+..+..+....+++|-+.+...
T Consensus 382 ~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 382 STEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp --------------------CCCGGGC
T ss_pred cccchhhcccccceeeeeccccccccC
Confidence 555556667777788888888865443
No 370
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=6.5e-20 Score=176.14 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=92.1
Q ss_pred CCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecC
Q 042902 148 LQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSS 226 (599)
Q Consensus 148 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~ 226 (599)
-+.++.+++.+.. +|..+. ++|++|+|++|.++++.|..|..+++|++|+|++|+|+.+|. .+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCc-cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4567777777763 343332 667777777777776666667777777777777777766654 345566666666666
Q ss_pred CCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccc
Q 042902 227 NSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISG 303 (599)
Q Consensus 227 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 303 (599)
|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 6666555555566666666666666665 345555555555555555555554444455555555555555555543
No 371
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=5.8e-21 Score=194.17 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=82.6
Q ss_pred CCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccc-ccccccccccccCcccccCCCCcccc
Q 042902 216 LKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQ-YLFLEYNRLQGSIPDSIGGLIDLKSL 294 (599)
Q Consensus 216 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L 294 (599)
+++|+.|+|++|+++.+.+.+|.++.+|+.|+|++| ++.+.+.+|.++.+|+ .+++.+ .++.+.+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 677888888888888777778888888888888887 7777777888888888 888877 6776777888888888888
Q ss_pred cCCCCcccccCCchhhccccceEEEc
Q 042902 295 DLSNNNISGAIPISLEKLLDLKYINV 320 (599)
Q Consensus 295 ~L~~N~l~~~~p~~~~~l~~L~~l~l 320 (599)
++++|+++.+.+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 88888888777778888888887753
No 372
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1e-20 Score=192.40 Aligned_cols=261 Identities=15% Similarity=0.147 Sum_probs=184.6
Q ss_pred CCCCCEEEccCccccccCCccccC-CCCCCEEeccCccCc--ccCCCcccccccCCCCCCcEEEcccCcccccCChhhhc
Q 042902 19 ASKLSRLELEMNSFYGFIPNTFGN-LRNLKRLSLNYNYLT--SSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGN 95 (599)
Q Consensus 19 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~N~l~--~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 95 (599)
+.+++.|.++++ +.......+.. +++|++|||++|+|+ .... +.++.++.+++..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~--------~~~~~~~~~~~~~~~---I~~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA--------GTYPNGKFYIYMANF---VPAYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS--------SSSGGGCCEEECTTE---ECTTTTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc--------ccccccccccccccc---cCHHHhcc
Confidence 567889998865 32222233444 788999999999988 2222 122224556666663 44566766
Q ss_pred --------ccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccc----cccCC
Q 042902 96 --------LSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQL----EGSIP 163 (599)
Q Consensus 96 --------l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~ 163 (599)
++ .|+.+.+.+ +++.+.+.+|.++++|++|+|++|.+..+.+.+|.++.++..+.+..+.. ..+..
T Consensus 92 ~~~~~~~g~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~ 169 (329)
T 3sb4_A 92 VVNGVTKGKQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169 (329)
T ss_dssp EETTEEEECT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT
T ss_pred cccccccccC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc
Confidence 65 478888877 77777778888888888888888888777777888877777777665322 22233
Q ss_pred hhhhcCCCCc--------------------------EEEeeCCccCCCCCccc-CCCCCCcEeecCCCCCCCCCc-cccC
Q 042902 164 DDLCRLAALF--------------------------LLDLGGNKLSGFVPACF-GNLTSLRNLYLGSNQLTSIPS-TLWN 215 (599)
Q Consensus 164 ~~~~~l~~L~--------------------------~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~ip~-~~~~ 215 (599)
.+|..+..|+ .+.+.++-.. .....+ ..+++|+.|+|++|+++.||. .|.+
T Consensus 170 ~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~ 248 (329)
T 3sb4_A 170 FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQ 248 (329)
T ss_dssp SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTT
T ss_pred cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhC
Confidence 3444444444 3334333111 111111 136889999999999999986 6778
Q ss_pred CCcccEEeecCCCccccCccccccccccc-EEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccc
Q 042902 216 LKYILYLNLSSNSFTGPLPLEIGNLRVLV-QIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSL 294 (599)
Q Consensus 216 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 294 (599)
+++|+.|++++| ++.+.+.+|.++.+|+ .+++++ .++.+.+.+|.++++|+.+++++|+++.+.+.+|.++++|+.+
T Consensus 249 ~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 249 KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 899999999988 8878888999999999 999988 7887888999999999999999999998888899999999987
Q ss_pred cC
Q 042902 295 DL 296 (599)
Q Consensus 295 ~L 296 (599)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 63
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=8.4e-20 Score=171.09 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=95.4
Q ss_pred cCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccC
Q 042902 41 GNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISN 120 (599)
Q Consensus 41 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~ 120 (599)
..+++|++|++++|.++.++. +..+++|++|++++|.++. +..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~-------l~~l~~L~~L~l~~n~~~~---------------------------~~~l~~ 86 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG-------IEYAHNIKDLTINNIHATN---------------------------YNPISG 86 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT-------GGGCTTCSEEEEESCCCSC---------------------------CGGGTT
T ss_pred hhcCCccEEeccCCCccChHH-------HhcCCCCCEEEccCCCCCc---------------------------chhhhc
Confidence 445555555565555554431 4455555555555554431 124556
Q ss_pred CCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCc-cCCCCCcccCCCCCCcEe
Q 042902 121 LTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNK-LSGFVPACFGNLTSLRNL 199 (599)
Q Consensus 121 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 199 (599)
+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|+ ++.+ + .+..+++|++|
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L 164 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSL 164 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEE
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEE
Confidence 6777777777777776666667777777777777777776666667777777777777776 5543 3 46667777777
Q ss_pred ecCCCCCCCCCccccCCCcccEEeecCCCcc
Q 042902 200 YLGSNQLTSIPSTLWNLKYILYLNLSSNSFT 230 (599)
Q Consensus 200 ~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~ 230 (599)
++++|+++.++ .+..+++|++|++++|++.
T Consensus 165 ~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 165 NIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 77777777665 5566666666666666654
No 374
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.81 E-value=8.9e-19 Score=182.07 Aligned_cols=262 Identities=13% Similarity=0.129 Sum_probs=121.8
Q ss_pred CCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccc
Q 042902 21 KLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSM 100 (599)
Q Consensus 21 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l 100 (599)
.++.+.+. |.++.+...+|.+. +|+.+.|..| ++.+... +|.++ +|+.+++.+ .++.+.+.+|.++. .|
T Consensus 114 ~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~-----aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-~L 182 (401)
T 4fdw_A 114 GYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDM-----AFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-NL 182 (401)
T ss_dssp SCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTT-----TTTTC-CCCEEECCT-TCCEECSSTTTTCT-TC
T ss_pred CccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHH-----hcCCC-CceEEEeCC-CccEehHHHhhCcc-cC
Confidence 34444443 23444444444442 3444444433 4444332 33332 344444443 34444444444443 24
Q ss_pred eEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCC
Q 042902 101 EVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGN 180 (599)
Q Consensus 101 ~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 180 (599)
+.+.+.+|+++.+...+|. .++|+.+.|..+ ++.+...+|.++++|+.+++.+| ++.+...+|.+ .+|+.+.+. |
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~ 257 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-N 257 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-T
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-C
Confidence 4444444444444444444 244455544422 44444444555555555555443 33344444444 445555552 2
Q ss_pred ccCCCCCcccCCCCCCcEeecCCCCCC-----CCCc-cccCCCcccEEeecCCCccccCcccccccccccEEEccCCccC
Q 042902 181 KLSGFVPACFGNLTSLRNLYLGSNQLT-----SIPS-TLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFS 254 (599)
Q Consensus 181 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~ip~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 254 (599)
.++.+...+|.++++|+.+.+.+|.+. .++. .|.++++|+.+++. +.++.+...+|.++.+|+.++|..| ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 344444445555555555555444443 3332 44455555555555 3344444555555555555555333 44
Q ss_pred CCCCccccCcccccccccccccccccCcccccCCC-CcccccCCCCcc
Q 042902 255 GFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLI-DLKSLDLSNNNI 301 (599)
Q Consensus 255 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l 301 (599)
.+.+.+|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.+
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 4455555555 566666655555544555555553 455555555544
No 375
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.81 E-value=1.3e-20 Score=184.52 Aligned_cols=138 Identities=22% Similarity=0.270 Sum_probs=105.7
Q ss_pred CCcCceecccccceEEEEEe-cCCcE--EEEEEecccccc------------------------cHHHHHHHHHHHhcCC
Q 042902 430 FSENNLIGRGGVASVYKARI-QDGIE--VAVKVFDLQYEG------------------------AFKSFDIECDMMKRIR 482 (599)
Q Consensus 430 ~~~~~~ig~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~e~~~l~~l~ 482 (599)
|...+.||+|+||.||+|.. .+|+. ||||+++..... ....+..|++++.++.
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999998 68999 999987543111 1136888999999998
Q ss_pred CCcc--eeEEEEEEcCCeeeEEEEccCC-C----ChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCC
Q 042902 483 HRNL--IKIISSCSNDDFKALVLEYMPH-G----SLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLK 555 (599)
Q Consensus 483 h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk 555 (599)
|+++ +.++++ +..++||||+.+ | +|.++... .++..+..++.|+++||.|||. +.+|+|||||
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~lH~--~~givHrDlk 198 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRLYQ--EAELVHADLS 198 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHHHH--TSCEECSSCS
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHHHH--HCCEEeCCCC
Confidence 8754 444432 356899999942 4 56655432 1233567899999999999993 3589999999
Q ss_pred CCCeeecCCCcEEEccccCCccCC
Q 042902 556 PNNVLLDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 556 ~~Nill~~~~~~kl~DFGla~~~~ 579 (599)
|+|||+++ .++|+|||+|....
T Consensus 199 p~NILl~~--~~~liDFG~a~~~~ 220 (258)
T 1zth_A 199 EYNIMYID--KVYFIDMGQAVTLR 220 (258)
T ss_dssp TTSEEESS--SEEECCCTTCEETT
T ss_pred HHHEEEcC--cEEEEECcccccCC
Confidence 99999998 99999999998653
No 376
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.81 E-value=1.3e-22 Score=220.26 Aligned_cols=120 Identities=22% Similarity=0.233 Sum_probs=73.1
Q ss_pred CCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCC
Q 042902 148 LQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSN 227 (599)
Q Consensus 148 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N 227 (599)
|+.|+|++|.|++ +|. |..+++|+.|+|++|+|+ .+|..|+.+++|+.|+|++|+|+.+| .+..+++|+.|+|++|
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 5666666666654 343 666666666666666666 34555666666666666666666665 5666666666666666
Q ss_pred CccccC-cccccccccccEEEccCCccCCCCCcc---ccCcccccccc
Q 042902 228 SFTGPL-PLEIGNLRVLVQIDLSMNNFSGFIPTT---IGDLKDLQYLF 271 (599)
Q Consensus 228 ~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~ 271 (599)
+|++.. |..|..+++|+.|+|++|++++.+|.. +..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 666655 666666666666666666666554321 22356666664
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=1.8e-20 Score=174.84 Aligned_cols=130 Identities=25% Similarity=0.291 Sum_probs=76.2
Q ss_pred cEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCcc--ccCCCcccEEeecCCCccccCcccccccccccEEEccC
Q 042902 173 FLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPST--LWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSM 250 (599)
Q Consensus 173 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 250 (599)
+.+++++|.++.+ |..+. .+|++|++++|+|+.++.. +..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566666666543 33222 2566666666666655542 55566666666666666655566666666666666666
Q ss_pred CccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccC
Q 042902 251 NNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAI 305 (599)
Q Consensus 251 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 305 (599)
|+|++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666555555666666666666666666555555666666666666666665443
No 378
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=7.5e-20 Score=171.41 Aligned_cols=151 Identities=17% Similarity=0.252 Sum_probs=76.6
Q ss_pred CCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEc
Q 042902 169 LAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDL 248 (599)
Q Consensus 169 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 248 (599)
+++|+.|++++|.++.+ | .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|++|+|
T Consensus 43 l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 33444444444444422 1 2344444444444444443332 3444455555555555555444455555555555555
Q ss_pred cCCccCCCCCccccCccccccccccccc-ccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCc
Q 042902 249 SMNNFSGFIPTTIGDLKDLQYLFLEYNR-LQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLE 326 (599)
Q Consensus 249 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 326 (599)
++|.+++..|..++.+++|++|++++|+ ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 5555555445555555555555555555 43 233 45566666666666666664 22 5566666666666666654
No 379
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.80 E-value=1.1e-18 Score=181.27 Aligned_cols=268 Identities=13% Similarity=0.130 Sum_probs=193.9
Q ss_pred ccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCcccc
Q 042902 40 FGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEIS 119 (599)
Q Consensus 40 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~ 119 (599)
+.....++.+.+.+ .++.++.. +|.++ +|+.++|.+| ++.+...+|.+. .|+.+.+.+ .+..+.+.+|.
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~-----aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~ 177 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKD-----AFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFY 177 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTT-----TTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTT
T ss_pred EEecCCccEEEECC-ccCEehHh-----hcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhh
Confidence 34456777887764 47777664 57774 6888888766 777777888774 477777775 67777778888
Q ss_pred CCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEe
Q 042902 120 NLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNL 199 (599)
Q Consensus 120 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 199 (599)
++++|+.++|++|.++.+...+|. ..+|+.+.|.++ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 888888888888888877777776 478888888744 66677778888888888888765 56667777777 678888
Q ss_pred ecCCCCCCCCCc-cccCCCcccEEeecCCCcc-----ccCcccccccccccEEEccCCccCCCCCccccCcccccccccc
Q 042902 200 YLGSNQLTSIPS-TLWNLKYILYLNLSSNSFT-----GPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLE 273 (599)
Q Consensus 200 ~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 273 (599)
.+ .+.++.|+. .|.++++|+.+++.+|.+. .+.+.+|.++++|+.++|. +.++.+...+|.++.+|+.+.|.
T Consensus 254 ~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 254 KL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC
T ss_pred Ee-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC
Confidence 88 455677754 6667788888888777665 4566677777788888777 44766667777777778877775
Q ss_pred cccccccCcccccCCCCcccccCCCCcccccCCchhhccc-cceEEEcccccCc
Q 042902 274 YNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLL-DLKYINVSFNKLE 326 (599)
Q Consensus 274 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~ 326 (599)
.| ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.+.
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 44 665666777777 777777777777766666676664 5667777666543
No 380
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=5.1e-19 Score=164.96 Aligned_cols=132 Identities=26% Similarity=0.296 Sum_probs=84.8
Q ss_pred cEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcc-cccccccccEEEccCCccCCCCCccccCcccccccccccc
Q 042902 197 RNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPL-EIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYN 275 (599)
Q Consensus 197 ~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 275 (599)
+.+++++|.++.+|..+.. +|++|++++|.+++..+. .|..+++|++|+|++|.|++..|..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5566666666666654433 566666666666655543 3666666666666666666666666666666666666666
Q ss_pred cccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCC
Q 042902 276 RLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 276 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 330 (599)
+|++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|+++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 6666666666666666666666666666666666666666666666666666554
No 381
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=5.4e-19 Score=164.79 Aligned_cols=131 Identities=28% Similarity=0.375 Sum_probs=85.6
Q ss_pred cEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccc
Q 042902 197 RNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNR 276 (599)
Q Consensus 197 ~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 276 (599)
+.+++++|.++.+|..+. ++|++|++++|.|+ .+|..|.++++|+.|+|++|.|++..+..|.++++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 455666666666665442 35666666666665 344566666666666666666666666666666666666676676
Q ss_pred ccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCC
Q 042902 277 LQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 277 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 330 (599)
|++..|..|..+++|+.|+|++|+|+...+..|..+++|+.|++++|++.|...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 666666667777777777777777776555567777777777777777776543
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=5.8e-18 Score=154.18 Aligned_cols=107 Identities=27% Similarity=0.316 Sum_probs=46.6
Q ss_pred CCCCEEEccCCcCC-cccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEee
Q 042902 122 TNLTTIYLGGNKLN-GSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLY 200 (599)
Q Consensus 122 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 200 (599)
++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..+..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 33344444444444444444444433 3344444444444444444443333333344444444
Q ss_pred cCCCCCCCCC--ccccCCCcccEEeecCCCcc
Q 042902 201 LGSNQLTSIP--STLWNLKYILYLNLSSNSFT 230 (599)
Q Consensus 201 L~~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~ 230 (599)
+++|.++.+| ..+..+++|+.|++++|.++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 4444444433 23333333333333333333
No 383
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=1.1e-17 Score=152.20 Aligned_cols=95 Identities=24% Similarity=0.319 Sum_probs=51.7
Q ss_pred cccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCC-hhhhcCCCCcEEEeeCCccCCCCC---cccCC
Q 042902 117 EISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIP-DDLCRLAALFLLDLGGNKLSGFVP---ACFGN 192 (599)
Q Consensus 117 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~ 192 (599)
.+..+++|++|+|++|++++.+|..+..+++|++|+|++|.|++..+ ..+..+++|+.|++++|.+++..+ ..|..
T Consensus 66 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 66 NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 34455555666666666555455555555555555555555554321 445555555555555555554443 34555
Q ss_pred CCCCcEeecCCCCCCCCCc
Q 042902 193 LTSLRNLYLGSNQLTSIPS 211 (599)
Q Consensus 193 l~~L~~L~L~~N~l~~ip~ 211 (599)
+++|++|++++|.+.++|.
T Consensus 146 l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 146 LPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CSSCCEETTEETTSCBCCS
T ss_pred CccCcEecCCCCChhhccc
Confidence 5555555555555555554
No 384
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=1.1e-17 Score=153.80 Aligned_cols=133 Identities=24% Similarity=0.271 Sum_probs=91.1
Q ss_pred CcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccc
Q 042902 196 LRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYN 275 (599)
Q Consensus 196 L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 275 (599)
.+.+++++|.++.+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4556666666666665432 46667777777766665556666777777777777777666666677777777777777
Q ss_pred cccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEcccccCcccCC
Q 042902 276 RLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSFNKLEGEIP 330 (599)
Q Consensus 276 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 330 (599)
++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.|.+|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7776666666777777777777777776555556677777777777777776655
No 385
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.72 E-value=1.8e-18 Score=175.74 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=99.5
Q ss_pred CCCcCceecccccceEEEEEecCCcEEEEEEeccccc--------------ccHHH--------HHHHHHHHhcCCCCcc
Q 042902 429 GFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYE--------------GAFKS--------FDIECDMMKRIRHRNL 486 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------------~~~~~--------~~~e~~~l~~l~h~ni 486 (599)
-|...+.||+|+||.||+|...+|+.||||+++.... ..... ...|...|.++.+..+
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4888899999999999999999999999998753210 01111 2345666666654443
Q ss_pred eeEEEEEEcCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCeeecCCC-
Q 042902 487 IKIISSCSNDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVLLDDNM- 565 (599)
Q Consensus 487 v~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nill~~~~- 565 (599)
.-..-+... ..+|||||++|+++.++.... ....++.|++.||.|+| +.+||||||||.|||+++++
T Consensus 176 ~vp~p~~~~--~~~LVME~i~G~~L~~l~~~~-------~~~~l~~qll~~l~~lH---~~gIVHrDLKp~NILl~~dgd 243 (397)
T 4gyi_A 176 PVPEPIAQS--RHTIVMSLVDALPMRQVSSVP-------DPASLYADLIALILRLA---KHGLIHGDFNEFNILIREEKD 243 (397)
T ss_dssp SCCCEEEEE--TTEEEEECCSCEEGGGCCCCS-------CHHHHHHHHHHHHHHHH---HTTEECSCCSTTSEEEEEEEC
T ss_pred CCCeeeecc--CceEEEEecCCccHhhhcccH-------HHHHHHHHHHHHHHHHH---HCCCcCCCCCHHHEEEeCCCC
Confidence 211111111 247999999999987654321 23568899999999999 88999999999999998776
Q ss_pred ---------cEEEccccCCcc
Q 042902 566 ---------VAHLSDFGMAKP 577 (599)
Q Consensus 566 ---------~~kl~DFGla~~ 577 (599)
.+.|+||+-|..
T Consensus 244 ~~d~~~~~~~~~iID~~Q~V~ 264 (397)
T 4gyi_A 244 AEDPSSITLTPIIIXFPQMVS 264 (397)
T ss_dssp SSCTTSEEEEEEECCCTTCEE
T ss_pred cccccccccceEEEEeCCccc
Confidence 389999998764
No 386
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=152.99 Aligned_cols=129 Identities=25% Similarity=0.322 Sum_probs=107.9
Q ss_pred cEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCc
Q 042902 173 FLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNN 252 (599)
Q Consensus 173 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 252 (599)
+.+++++|.++.+ |..+ .++|++|+|++|+|+.+|..+.++++|+.|+|++|.|++..+..|.++++|+.|+|++|.
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4677777777754 3333 257888888888888888888888888999999999888888888899999999999999
Q ss_pred cCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCccccc
Q 042902 253 FSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGA 304 (599)
Q Consensus 253 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 304 (599)
|+++.|..|.++++|++|+|++|+|+...+..|..+++|+.|+|++|++...
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9988888899999999999999999977777888999999999999998753
No 387
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=1.3e-17 Score=148.52 Aligned_cols=125 Identities=22% Similarity=0.268 Sum_probs=56.3
Q ss_pred CCCCEEEccCCcCC-cccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEee
Q 042902 122 TNLTTIYLGGNKLN-GSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLY 200 (599)
Q Consensus 122 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 200 (599)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 34444444555555555555555433 3344444444444444444443444444444444444
Q ss_pred cCCCCCCCCC--ccccCCCcccEEeecCCCccccCc---ccccccccccEEEc
Q 042902 201 LGSNQLTSIP--STLWNLKYILYLNLSSNSFTGPLP---LEIGNLRVLVQIDL 248 (599)
Q Consensus 201 L~~N~l~~ip--~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L 248 (599)
+++|.++.+| ..+..+++|++|++++|.+++..+ ..+..+++|+.||+
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 4444444432 333444444444444444443322 23344444444443
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=2e-17 Score=147.32 Aligned_cols=125 Identities=23% Similarity=0.181 Sum_probs=55.4
Q ss_pred CCcEEEeeCCccC-CCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEcc
Q 042902 171 ALFLLDLGGNKLS-GFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLS 249 (599)
Q Consensus 171 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 249 (599)
+|+.|++++|.++ +..|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 3444444444444 33344444444444444444444444 334444444444444444444344444444444444454
Q ss_pred CCccCCC-CCccccCcccccccccccccccccCc---ccccCCCCcccccC
Q 042902 250 MNNFSGF-IPTTIGDLKDLQYLFLEYNRLQGSIP---DSIGGLIDLKSLDL 296 (599)
Q Consensus 250 ~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L 296 (599)
+|.+++. .+..++.+++|++|++++|++++..+ ..+..+++|+.|++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 4444432 12334444444444444444443333 23444444444444
No 389
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=3.3e-16 Score=163.07 Aligned_cols=297 Identities=13% Similarity=0.067 Sum_probs=194.7
Q ss_pred CccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccc
Q 042902 8 FSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDG 87 (599)
Q Consensus 8 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~ 87 (599)
++..-..+|.++++|+.+.|. +.++.+...+|.++++|+.++|.++ ++.+... +|.++++|+.+.+..+ +..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-----aF~~c~~L~~i~~p~~-l~~ 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRC-----TFSGCYALKSILLPLM-LKS 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTT-----TTTTCTTCCCCCCCTT-CCE
T ss_pred EeEhHHHHhhCCCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccch-----hhcccccchhhcccCc-eee
Confidence 444455678899999999997 4588888999999999999999765 7777764 6899999998888655 555
Q ss_pred cCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhh
Q 042902 88 ILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLC 167 (599)
Q Consensus 88 ~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 167 (599)
+...+|.+.. .++... ...+..+...+|.++++|+.+.+.++. ..+...+|.++.+|+.+++..| ++.+...+|.
T Consensus 131 i~~~aF~~~~-~~~~~~--~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~ 205 (394)
T 4fs7_A 131 IGVEAFKGCD-FKEITI--PEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFA 205 (394)
T ss_dssp ECTTTTTTCC-CSEEEC--CTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTT
T ss_pred ecceeeeccc-cccccc--CccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhc
Confidence 7777777664 232222 223344556778888888888887654 4466778888888888888776 5556666777
Q ss_pred cCCCCcEEEeeCCccC---------------------CCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecC
Q 042902 168 RLAALFLLDLGGNKLS---------------------GFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSS 226 (599)
Q Consensus 168 ~l~~L~~L~Ls~N~l~---------------------~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~ 226 (599)
++..|+.+.+..+... .+...+|.++..|+.+.+..+...--...+..+..++.+....
T Consensus 206 ~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 206 ECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp TCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS
T ss_pred cccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCc
Confidence 7777766665554322 1223344444555555554443222222444455555555444
Q ss_pred CCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCC
Q 042902 227 NSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIP 306 (599)
Q Consensus 227 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 306 (599)
+.+ ....|..+.+|+.+.+..+ ++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+++..| ++.+..
T Consensus 286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 332 2345666667777777654 55555666777777777777543 55566667777777777777665 665666
Q ss_pred chhhccccceEEEcccc
Q 042902 307 ISLEKLLDLKYINVSFN 323 (599)
Q Consensus 307 ~~~~~l~~L~~l~l~~N 323 (599)
.+|.++.+|+.+++..+
T Consensus 360 ~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTBTTCTTCCEEEEEGG
T ss_pred HHhhCCCCCCEEEECCC
Confidence 67777777777776543
No 390
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=4.7e-17 Score=149.32 Aligned_cols=110 Identities=23% Similarity=0.242 Sum_probs=55.6
Q ss_pred ccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCc
Q 042902 118 ISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLR 197 (599)
Q Consensus 118 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 197 (599)
+.++++|++|+|++|.++.+ |......++|++|+|++|.|++. ..|..+++|++|+|++|+++++.+..|..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 44556666666666666643 32222223566666666665543 3445555555555555555544444444555555
Q ss_pred EeecCCCCCCCCCc--cccCCCcccEEeecCCCcc
Q 042902 198 NLYLGSNQLTSIPS--TLWNLKYILYLNLSSNSFT 230 (599)
Q Consensus 198 ~L~L~~N~l~~ip~--~~~~l~~L~~L~Ls~N~l~ 230 (599)
+|++++|+|+.+|. .+..+++|+.|++++|.++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 55555555554443 3444444444444444444
No 391
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=5.5e-16 Score=142.31 Aligned_cols=127 Identities=26% Similarity=0.294 Sum_probs=59.6
Q ss_pred CEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCC
Q 042902 125 TTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSN 204 (599)
Q Consensus 125 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 204 (599)
+.+++++|.++.++. .+ .++|++|++++|++++..+..|..+++|++|++++|+++++.+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCT-TC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCC-CC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 445555555553321 11 134555555555555444444445555555555555555444444455555555555555
Q ss_pred CCCCCCcc-ccCCCcccEEeecCCCccccCcccccccccccEEEccCCccC
Q 042902 205 QLTSIPST-LWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFS 254 (599)
Q Consensus 205 ~l~~ip~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 254 (599)
+|+.+|.. +..+++|++|++++|.+++..+..|..+++|+.|+|++|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 55544432 334444444444444444333333444444444444444444
No 392
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.65 E-value=1.2e-16 Score=146.58 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=83.5
Q ss_pred cCCCCCCcEeecCCCCCCCCCccccCC-CcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccc
Q 042902 190 FGNLTSLRNLYLGSNQLTSIPSTLWNL-KYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQ 268 (599)
Q Consensus 190 ~~~l~~L~~L~L~~N~l~~ip~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 268 (599)
+.++++|++|++++|+++.+|. +..+ ++|++|++++|.+++. ..|..+++|+.|+|++|.|++..+..|..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4445556666666666665543 3333 3666666666666654 4566666666666666666655445556666777
Q ss_pred ccccccccccccCcc--cccCCCCcccccCCCCcccccCCc----hhhccccceEEEcccccCcc
Q 042902 269 YLFLEYNRLQGSIPD--SIGGLIDLKSLDLSNNNISGAIPI----SLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 269 ~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~l~l~~N~l~~ 327 (599)
+|+|++|+++. +|. .+..+++|+.|++++|+++ .+|. .+..+++|+.||+++|....
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777777653 333 5667777777777777776 3444 36777777777777777653
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.65 E-value=1.3e-18 Score=163.00 Aligned_cols=132 Identities=24% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCCEEEcccccccccCCh------hhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCc
Q 042902 145 LQKLQLLSLEDNQLEGSIPD------DLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKY 218 (599)
Q Consensus 145 l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~ 218 (599)
...++.++++.|.+.+..|. .+..+++|++|+|++|++++ +| .+..+++|+.|++++|.++.+|..+..+++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~ 94 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADT 94 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCc
Confidence 33444444444444443333 55555555666665555554 23 455555555555555555555554444455
Q ss_pred ccEEeecCCCccccCcccccccccccEEEccCCccCCCCC-ccccCccccccccccccccccc
Q 042902 219 ILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIP-TTIGDLKDLQYLFLEYNRLQGS 280 (599)
Q Consensus 219 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~ 280 (599)
|++|++++|++++. | .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++++.
T Consensus 95 L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 95 LEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp CSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 55555555555542 2 34455555555555555553222 2344444555555555544433
No 394
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.64 E-value=2.1e-18 Score=161.69 Aligned_cols=156 Identities=19% Similarity=0.273 Sum_probs=133.2
Q ss_pred hhhcCCCCcEEEeeCCccCCCCCc------ccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccc
Q 042902 165 DLCRLAALFLLDLGGNKLSGFVPA------CFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIG 238 (599)
Q Consensus 165 ~~~~l~~L~~L~Ls~N~l~~~~~~------~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 238 (599)
.+.....++.++++.|.+++..|. .|..+++|++|++++|.++.+| .+..+++|++|++++|.++ .+|..+.
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 356677888888888888887776 8889999999999999999998 8888999999999999998 5677778
Q ss_pred ccccccEEEccCCccCCCCCccccCcccccccccccccccccCc-ccccCCCCcccccCCCCcccccCCch---------
Q 042902 239 NLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIP-DSIGGLIDLKSLDLSNNNISGAIPIS--------- 308 (599)
Q Consensus 239 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~--------- 308 (599)
.+++|+.|+|++|.+++. | .+..+++|++|++++|++++..+ ..+..+++|+.|++++|++++.+|..
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 889999999999999974 4 68899999999999999986543 57889999999999999998776653
Q ss_pred -hhccccceEEEcccccCc
Q 042902 309 -LEKLLDLKYINVSFNKLE 326 (599)
Q Consensus 309 -~~~l~~L~~l~l~~N~l~ 326 (599)
+..+++|+.|| +|+++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 77889999886 66665
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=1.3e-14 Score=151.08 Aligned_cols=297 Identities=14% Similarity=0.107 Sum_probs=217.8
Q ss_pred CcCccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCc-----------------ccccc
Q 042902 6 NNFSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKL-----------------NFLSS 68 (599)
Q Consensus 6 n~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------~~~~~ 68 (599)
++++..-..+|.++++|+.++|.++ ++.+...+|.++.+|+.+.+..+ ++.+.... -...+
T Consensus 80 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~a 157 (394)
T 4fs7_A 80 STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEA 157 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTT
T ss_pred CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhh
Confidence 4466566678999999999999754 88888899999999999887654 33332210 00125
Q ss_pred cCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCC
Q 042902 69 LSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKL 148 (599)
Q Consensus 69 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 148 (599)
|.++++|+.+.+.++. ..+...+|.+.. .|+.+.+..+ ++.+...+|.+++.|+.+.+..+... + ...+....+|
T Consensus 158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~-~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l 232 (394)
T 4fs7_A 158 FATCESLEYVSLPDSM-ETLHNGLFSGCG-KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGV 232 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCT-TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCC
T ss_pred hcccCCCcEEecCCcc-ceeccccccCCC-CceEEEcCCC-ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCC
Confidence 6667777777776543 346666666665 3666666554 55566667777777777776655432 2 2233444677
Q ss_pred CEEEcccccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCC
Q 042902 149 QLLSLEDNQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNS 228 (599)
Q Consensus 149 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~ 228 (599)
+.+.+..+ ++.+....|..+..|+.+.+..+... +....|..+..++.+....+.+.. ..+..+.+|+.+.+..+
T Consensus 233 ~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 233 KNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-
T ss_pred ceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc--ccccccccccccccccc-
Confidence 77777544 34466678888999999999887554 677889999999999887765322 36778899999999865
Q ss_pred ccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCch
Q 042902 229 FTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPIS 308 (599)
Q Consensus 229 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~ 308 (599)
++.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..| ++.+...+|.++++|+.+++..+ ++ .+...
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~ 383 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYD 383 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGG
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhhe
Confidence 77677889999999999999754 77778889999999999999877 77788889999999999999765 44 34567
Q ss_pred hhccccceEE
Q 042902 309 LEKLLDLKYI 318 (599)
Q Consensus 309 ~~~l~~L~~l 318 (599)
|.+.++|+.+
T Consensus 384 F~~c~~L~~I 393 (394)
T 4fs7_A 384 FEDTTKFKWI 393 (394)
T ss_dssp BCTTCEEEEE
T ss_pred ecCCCCCcEE
Confidence 8888888865
No 396
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=5.4e-14 Score=146.30 Aligned_cols=296 Identities=12% Similarity=0.133 Sum_probs=182.5
Q ss_pred CCCCcCCC-CCCEEEccCccccccCCccccCCCCCCEEeccCcc---CcccCCCcccccccCCCCCCcEEEcccCccccc
Q 042902 13 PSFIFNAS-KLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNY---LTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGI 88 (599)
Q Consensus 13 ~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 88 (599)
..+|.+.. .|+.+.+-. .++.|...+|.++.+|+.+.+..|. ++.+... +|.++.+|+.+.+..+ ++.+
T Consensus 56 ~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~-----aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ-----AFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTT-----TTTTCTTCCBCGGGTT-CSEE
T ss_pred HhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechh-----hchhcccceeeccCCc-ccee
Confidence 34565553 477777753 4677777777777777777777654 5555543 5777777777666544 4446
Q ss_pred CChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCChhhhc
Q 042902 89 LPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIPDDLCR 168 (599)
Q Consensus 89 ~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 168 (599)
...+|.... .|+.+.+.+ .+..+...+|.++.+|+.+.+..+ +..+...+|.. .+|+.+.+..+-.. +...+|..
T Consensus 129 ~~~aF~~c~-~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~ 203 (394)
T 4gt6_A 129 DSEAFHHCE-ELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSE 203 (394)
T ss_dssp CTTTTTTCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTT
T ss_pred hhhhhhhhc-ccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhh
Confidence 666666665 366666654 344456666777777777777654 44455555654 45777776654433 55566666
Q ss_pred CCCCcEEEeeCCccCCCCCcccC-------------CCCCCcEeecCCCCCCCCC-ccccCCCcccEEeecCCCccccCc
Q 042902 169 LAALFLLDLGGNKLSGFVPACFG-------------NLTSLRNLYLGSNQLTSIP-STLWNLKYILYLNLSSNSFTGPLP 234 (599)
Q Consensus 169 l~~L~~L~Ls~N~l~~~~~~~~~-------------~l~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~~~~ 234 (599)
+.++.......+.........+. ....+..+.+. +.++.+. ..|.++..|+.+.+..+..+ +..
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~ 281 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGT 281 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECT
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccce-ecC
Confidence 66666666554443321111111 11122222222 1222332 24566777888887765543 666
Q ss_pred ccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhcccc
Q 042902 235 LEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLD 314 (599)
Q Consensus 235 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 314 (599)
.+|.++.+|+.+.+. +.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 777778888888875 4566566677888888888888654 65566677888888888888544 66566777888888
Q ss_pred ceEEEcccccC
Q 042902 315 LKYINVSFNKL 325 (599)
Q Consensus 315 L~~l~l~~N~l 325 (599)
|+.+++.+|..
T Consensus 359 L~~i~~~~~~~ 369 (394)
T 4gt6_A 359 LNNIEYSGSRS 369 (394)
T ss_dssp CCEEEESSCHH
T ss_pred CCEEEECCcee
Confidence 88888877654
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=4.2e-15 Score=135.31 Aligned_cols=106 Identities=23% Similarity=0.209 Sum_probs=73.0
Q ss_pred CcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccc
Q 042902 196 LRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYN 275 (599)
Q Consensus 196 L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 275 (599)
.+.+++++|.++.+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4667777777777776553 56777777777777666667777777777777777777666666666777777777777
Q ss_pred cccccCcccccCCCCcccccCCCCcccc
Q 042902 276 RLQGSIPDSIGGLIDLKSLDLSNNNISG 303 (599)
Q Consensus 276 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 303 (599)
+|++..+..|..+++|+.|+|++|+++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7666555566666666666666666664
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.56 E-value=6.6e-15 Score=134.55 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=74.2
Q ss_pred cEeecCCCCCCCCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCccccccccccccc
Q 042902 197 RNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNR 276 (599)
Q Consensus 197 ~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 276 (599)
+.+++++|.++.+|..+. ++|++|+|++|+|++..|..|.++++|+.|+|++|+|+++.+..|..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776553 567777777777777667777777777777777777776666666777777777777777
Q ss_pred ccccCcccccCCCCcccccCCCCccc
Q 042902 277 LQGSIPDSIGGLIDLKSLDLSNNNIS 302 (599)
Q Consensus 277 l~~~~~~~~~~l~~L~~L~L~~N~l~ 302 (599)
|++..+..|..+++|+.|+|++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77655555777777777777777776
No 399
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=6.7e-15 Score=134.01 Aligned_cols=111 Identities=20% Similarity=0.181 Sum_probs=101.2
Q ss_pred cccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCC
Q 042902 218 YILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLS 297 (599)
Q Consensus 218 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 297 (599)
..+.+++++|.++. +|..+ .++|+.|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999995 55554 3789999999999999999999999999999999999998888889999999999999
Q ss_pred CCcccccCCchhhccccceEEEcccccCcccCCC
Q 042902 298 NNNISGAIPISLEKLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 298 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 331 (599)
+|+|++..+..|..+++|+.|+|++|+++|.++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9999988888899999999999999999988763
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.53 E-value=3e-13 Score=140.66 Aligned_cols=300 Identities=11% Similarity=0.112 Sum_probs=218.9
Q ss_pred cCccCCCCCCcCCCCCCEEEccCcc---ccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccC
Q 042902 7 NFSGTIPSFIFNASKLSRLELEMNS---FYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNN 83 (599)
Q Consensus 7 ~~~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 83 (599)
.++..-..+|.++++|+.+.+..|. ++.+...+|.++.+|+.+.+..+ ++.+... +|.++.+|+.+.+..+
T Consensus 74 svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~-----aF~~c~~L~~i~lp~~ 147 (394)
T 4gt6_A 74 TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE-----AFHHCEELDTVTIPEG 147 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT-----TTTTCTTCCEEECCTT
T ss_pred CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh-----hhhhhcccccccccce
Confidence 3555556789999999999998774 88888999999999999998765 7777764 6999999999999755
Q ss_pred cccccCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccccccccCC
Q 042902 84 SLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGSIP 163 (599)
Q Consensus 84 ~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 163 (599)
+..+...+|.... .|+.+.+.+ .+..+...+|.+ .+|+.+.+..+-. .+...+|..+.+|+......+.......
T Consensus 148 -~~~I~~~~F~~c~-~L~~i~~~~-~~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~ 222 (394)
T 4gt6_A 148 -VTSVADGMFSYCY-SLHTVTLPD-SVTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDN 222 (394)
T ss_dssp -CCEECTTTTTTCT-TCCEEECCT-TCCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSS
T ss_pred -eeeecccceeccc-ccccccccc-eeeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccccccc
Confidence 5557788888876 488888866 466677778865 6799999987543 4667789999999998887766542211
Q ss_pred hhhh-------------cCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCC-ccccCCCcccEEeecCCCc
Q 042902 164 DDLC-------------RLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIP-STLWNLKYILYLNLSSNSF 229 (599)
Q Consensus 164 ~~~~-------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N~l 229 (599)
..+. ....+..+.+. +.++.+...+|.++..|+.+.+.++.. .+. ..|.++++|+.+.+. +.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i 299 (394)
T 4gt6_A 223 VLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRI 299 (394)
T ss_dssp CEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTC
T ss_pred eeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC-Ccc
Confidence 1111 12233444443 234445667889999999999876544 444 477788999999996 556
Q ss_pred cccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchh
Q 042902 230 TGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISL 309 (599)
Q Consensus 230 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 309 (599)
+.+...+|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++.+|.... ..+
T Consensus 300 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~ 374 (394)
T 4gt6_A 300 TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAI 374 (394)
T ss_dssp CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTC
T ss_pred cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhh
Confidence 6677888999999999999864 77677788999999999999654 776778889999999999999887542 456
Q ss_pred hccccceEEEcccccC
Q 042902 310 EKLLDLKYINVSFNKL 325 (599)
Q Consensus 310 ~~l~~L~~l~l~~N~l 325 (599)
.....|+.+.+..|.+
T Consensus 375 ~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 375 STDSGLQNLPVAPGSI 390 (394)
T ss_dssp BCCCCC----------
T ss_pred hccCCCCEEEeCCCCE
Confidence 6677888888776654
No 401
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=1.7e-14 Score=131.73 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=99.3
Q ss_pred ccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCC
Q 042902 219 ILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSN 298 (599)
Q Consensus 219 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 298 (599)
-+.+++++|.++ .+|..+. ++|+.|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999998 4565553 8999999999999999999999999999999999999988888889999999999999
Q ss_pred CcccccCCchhhccccceEEEcccccCcccCCC
Q 042902 299 NNISGAIPISLEKLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 299 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 331 (599)
|+|++..+..|..+++|+.|++++|++.+.++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 999987777799999999999999999987653
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=5.9e-16 Score=159.21 Aligned_cols=185 Identities=17% Similarity=0.122 Sum_probs=88.6
Q ss_pred CCCCEEEccCCcCCcccCccccC-----CCCCCEEEcccccccccCChhhh-cCCCCcEEEeeCCccCCCCCccc-----
Q 042902 122 TNLTTIYLGGNKLNGSIPIALDK-----LQKLQLLSLEDNQLEGSIPDDLC-RLAALFLLDLGGNKLSGFVPACF----- 190 (599)
Q Consensus 122 ~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~----- 190 (599)
++|++|+|++|.|+......+.. .++|++|+|++|.|.+.....+. .+++|+.|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56677777777776433333322 25677777777776543322222 34566666666666654332322
Q ss_pred CCCCCCcEeecCCCCCCC-----CCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCccCCCCCccccCcc
Q 042902 191 GNLTSLRNLYLGSNQLTS-----IPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLK 265 (599)
Q Consensus 191 ~~l~~L~~L~L~~N~l~~-----ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 265 (599)
...++|++|+|++|.|+. ++..+...++|++|+|++|.|++.... .++..+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~--------------------~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE--------------------LLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH--------------------HHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH--------------------HHHHHHhcCC
Confidence 234556666666665543 222333444555555555555432110 0122233344
Q ss_pred ccccccccccccccc----CcccccCCCCcccccCCCCcccccCCchhhcccc-----ceEEE--cccccCc
Q 042902 266 DLQYLFLEYNRLQGS----IPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLD-----LKYIN--VSFNKLE 326 (599)
Q Consensus 266 ~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-----L~~l~--l~~N~l~ 326 (599)
+|++|+|++|.|++. ++..+...++|++|+|++|.|+......+..+.. |+.+. +..|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 444445555444432 2223334456666666666665544444433311 45554 4455443
No 403
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.47 E-value=7.1e-14 Score=142.81 Aligned_cols=132 Identities=18% Similarity=0.138 Sum_probs=83.3
Q ss_pred EeecCCC-CCCCCCccccCCCcccEEeecC-CCccccCcccccccccccEEEccCCccCCCCCccccCcccccccccccc
Q 042902 198 NLYLGSN-QLTSIPSTLWNLKYILYLNLSS-NSFTGPLPLEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYN 275 (599)
Q Consensus 198 ~L~L~~N-~l~~ip~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 275 (599)
.++++++ .|+.+|. +..+++|+.|+|++ |.|+++.+..|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 6667766 66666777777774 7777666666777777777777777777766667777777777777777
Q ss_pred cccccCcccccCCCCcccccCCCCcccccCC-chhhccccceEEEcccccCcccCCC
Q 042902 276 RLQGSIPDSIGGLIDLKSLDLSNNNISGAIP-ISLEKLLDLKYINVSFNKLEGEIPR 331 (599)
Q Consensus 276 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~p~ 331 (599)
+|++..+..|..++ |+.|+|++|.+..... ..|..+.......+..+.++|..|.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 77766655565554 7777777777763322 2233332223333445566665554
No 404
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.43 E-value=3.9e-13 Score=131.54 Aligned_cols=145 Identities=18% Similarity=0.164 Sum_probs=114.7
Q ss_pred HHhCCCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCC-CCcceeEEEEEEcCCeeeEEE
Q 042902 425 QATNGFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALVL 503 (599)
Q Consensus 425 ~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ 503 (599)
....+|+.....+.|+.+.||++... ++.+++|+...........+..|+++++.+. |..+.++++++.+.+..|+||
T Consensus 11 ~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~ 89 (263)
T 3tm0_A 11 KLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLM 89 (263)
T ss_dssp HHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEE
T ss_pred HHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEE
Confidence 44567888888888899999999764 7899999987543233346888999999884 678889999999888999999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFG--------------------------------------- 544 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--------------------------------------- 544 (599)
||++|.++.+.+.. ......++.++++++..||..
T Consensus 90 e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (263)
T 3tm0_A 90 SEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTP 163 (263)
T ss_dssp ECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCS
T ss_pred EecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcccccccccccccccc
Confidence 99999999875321 112346888999999999951
Q ss_pred -----------------CCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 545 -----------------YSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 545 -----------------~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
....++|+|++|.||+++++..+.|+||+.|.
T Consensus 164 ~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 164 FKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp SSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred CCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01459999999999999876667899999875
No 405
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.7e-15 Score=155.78 Aligned_cols=187 Identities=18% Similarity=0.097 Sum_probs=116.4
Q ss_pred CCCCCEEeccCccCcccCCCcccccccC-CCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCCccc---
Q 042902 43 LRNLKRLSLNYNYLTSSTPKLNFLSSLS-NCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIPEEI--- 118 (599)
Q Consensus 43 l~~L~~L~L~~N~l~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~--- 118 (599)
++.|++|+|++|.|+..... .+...+. ..++|++|+|++|.|+......+...-..++.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 35677777777777653321 0111122 225777777777777644333333322347777777777765544444
Q ss_pred --cCCCCCCEEEccCCcCCcc----cCccccCCCCCCEEEcccccccccC----ChhhhcCCCCcEEEeeCCccCCCC--
Q 042902 119 --SNLTNLTTIYLGGNKLNGS----IPIALDKLQKLQLLSLEDNQLEGSI----PDDLCRLAALFLLDLGGNKLSGFV-- 186 (599)
Q Consensus 119 --~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~-- 186 (599)
...++|++|+|++|.|+.. ++.++..+++|++|+|++|.|.+.. +..+...++|+.|+|++|.|++..
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3467899999999988642 3344577888999999999987532 455677788999999999987542
Q ss_pred --CcccCCCCCCcEeecCCCCCCCCC-ccccC---CC--cccEEe--ecCCCcc
Q 042902 187 --PACFGNLTSLRNLYLGSNQLTSIP-STLWN---LK--YILYLN--LSSNSFT 230 (599)
Q Consensus 187 --~~~~~~l~~L~~L~L~~N~l~~ip-~~~~~---l~--~L~~L~--Ls~N~l~ 230 (599)
...+...++|++|+|++|.|+... ..+.. .. .|+.+. +..|.++
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 233445688999999999988432 12221 12 166666 6666665
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.40 E-value=2.5e-11 Score=125.42 Aligned_cols=288 Identities=10% Similarity=0.088 Sum_probs=178.3
Q ss_pred CcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhc
Q 042902 16 IFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGN 95 (599)
Q Consensus 16 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 95 (599)
+....+|+.+.+. ..++.|...+|.++.+|+.+.|..+ ++.+... +|.++ +|+.+.+..+ ++.+...+|..
T Consensus 42 ~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~-----aF~~c-~l~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 42 YKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDG-----AFADT-KLQSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp GGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTT-----TTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred cccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechh-----hhcCC-CCceEECCce-eeEeccceecc
Confidence 4455778888885 5688888888888888999888654 7777664 67776 5777777644 66666777765
Q ss_pred ccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEccccccccc------------CC
Q 042902 96 LSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQLEGS------------IP 163 (599)
Q Consensus 96 l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~ 163 (599)
. .|+.+.+.++ +..+...+|.+. +|+.+.+..+ ++.+...+|....+++.+.+..+..... ..
T Consensus 113 ~--~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 113 T--DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp C--CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred C--CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 4 4777777653 444555566554 5666666543 4445566777777777777665543211 11
Q ss_pred hhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCC-ccccCCCcccEEeecCCCccccCccccccccc
Q 042902 164 DDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIP-STLWNLKYILYLNLSSNSFTGPLPLEIGNLRV 242 (599)
Q Consensus 164 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 242 (599)
..+.....+..+.+..+. .......|....+|+.+.+..+ ++.++ ..+.++..|+.+.+..+ ++.+...+|.++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 122333344444443322 2234455566666666666544 44443 35556666777777655 55455666666677
Q ss_pred ccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhccccceEEEccc
Q 042902 243 LVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKLLDLKYINVSF 322 (599)
Q Consensus 243 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 322 (599)
|+.+.+..+ ++.+....|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|.++ ++.+...+|.++.+|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 777766543 44455566677777777777766666666666777777777777543 5555566677777776665543
No 407
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.6e-12 Score=132.75 Aligned_cols=89 Identities=26% Similarity=0.193 Sum_probs=40.7
Q ss_pred ccCCCCCCEEEccc-ccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCccccCCCccc
Q 042902 142 LDKLQKLQLLSLED-NQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPSTLWNLKYIL 220 (599)
Q Consensus 142 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~ 220 (599)
+..+++|++|+|++ |+|+++.+..|..+++|+.|+|++|+|+++.|..|.++++|+.|+|++|+|+.+|..++....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 44444444444443 44444444444444444444444444444444444444444444444444444443332222244
Q ss_pred EEeecCCCcc
Q 042902 221 YLNLSSNSFT 230 (599)
Q Consensus 221 ~L~Ls~N~l~ 230 (599)
.|+|++|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 4445444444
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.32 E-value=6.9e-11 Score=122.08 Aligned_cols=286 Identities=12% Similarity=0.060 Sum_probs=161.6
Q ss_pred CccCCCCCCcCCCCCCEEEccCccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCcccc
Q 042902 8 FSGTIPSFIFNASKLSRLELEMNSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDG 87 (599)
Q Consensus 8 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~ 87 (599)
++..-..+|.++.+|+.++|.. .++.+...+|.+. +|+.+.+..+ ++.+... +|... +|+.+++..+ +..
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~-----aF~~~-~L~~i~lp~~-~~~ 126 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDY-----VFQGT-DLDDFEFPGA-TTE 126 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTT-----TTTTC-CCSEEECCTT-CCE
T ss_pred ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccc-----eeccC-CcccccCCCc-ccc
Confidence 3333345666667777777753 3666666677665 5666666533 5555443 35443 5777776554 333
Q ss_pred cCChhhhcccccceEEEccCCcccccCCccccCCCCCCEEEccCCcCCc------------ccCccccCCCCCCEEEccc
Q 042902 88 ILPRAIGNLSQSMEVFFMFNCNISGSIPEEISNLTNLTTIYLGGNKLNG------------SIPIALDKLQKLQLLSLED 155 (599)
Q Consensus 88 ~~~~~~~~l~~~l~~l~l~~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~ 155 (599)
+...+|.+. .++...+.. .++.+...+|.++.+++.+.+..+.... .....+.....+..+.+..
T Consensus 127 i~~~~F~~~--~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
T 4h09_A 127 IGNYIFYNS--SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPS 203 (379)
T ss_dssp ECTTTTTTC--CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCT
T ss_pred ccccccccc--eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccc
Confidence 445555543 233333332 3444555666666666666665443221 1122334444555555544
Q ss_pred ccccccCChhhhcCCCCcEEEeeCCccCCCCCcccCCCCCCcEeecCCCCCCCCCc-cccCCCcccEEeecCCCccccCc
Q 042902 156 NQLEGSIPDDLCRLAALFLLDLGGNKLSGFVPACFGNLTSLRNLYLGSNQLTSIPS-TLWNLKYILYLNLSSNSFTGPLP 234 (599)
Q Consensus 156 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ip~-~~~~l~~L~~L~Ls~N~l~~~~~ 234 (599)
+.-. .....+....+|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+.. .+.++.+|+.+.+..+ ++.+..
T Consensus 204 ~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~ 279 (379)
T 4h09_A 204 TVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY 279 (379)
T ss_dssp TCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT
T ss_pred ceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc
Confidence 3322 44555666666666666544 44455566666677777776654 555543 4555666777766543 444555
Q ss_pred ccccccccccEEEccCCccCCCCCccccCcccccccccccccccccCcccccCCCCcccccCCCCcccccCCchhhcc
Q 042902 235 LEIGNLRVLVQIDLSMNNFSGFIPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLIDLKSLDLSNNNISGAIPISLEKL 312 (599)
Q Consensus 235 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 312 (599)
.+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 66667777777777666666666666777777777777543 55455566777777777766544 544445555443
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.31 E-value=5.5e-12 Score=123.02 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=99.6
Q ss_pred eec-ccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCc--ceeEEEEEEcCCeeeEEEEccCCCCh
Q 042902 435 LIG-RGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN--LIKIISSCSNDDFKALVLEYMPHGSL 511 (599)
Q Consensus 435 ~ig-~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~g~L 511 (599)
.++ .|..+.||++...+|..+++|+.... ....+..|+++++.+.+.+ +.+++++...++..++||||++|.++
T Consensus 26 ~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l 102 (264)
T 1nd4_A 26 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL 102 (264)
T ss_dssp ECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred ecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCccc
Confidence 344 55569999998877889999997543 2245778999998886544 56688888887889999999999888
Q ss_pred hhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCC----------------------------------------------
Q 042902 512 EKCLYSSNYILDIFQRLNIMIDVASALEYLHFGY---------------------------------------------- 545 (599)
Q Consensus 512 ~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~---------------------------------------------- 545 (599)
. ... .+ ...++.++++++..+|...
T Consensus 103 ~--~~~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (264)
T 1nd4_A 103 L--SSH----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFAR 173 (264)
T ss_dssp T--TSC----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHH
T ss_pred C--cCc----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHH
Confidence 4 211 12 2357888889999998421
Q ss_pred ---------CCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 546 ---------SVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 546 ---------~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
...++|+|++|.||++++++.++|+|||.|..
T Consensus 174 l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 174 LKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 11299999999999998876778999999863
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=99.15 E-value=9.2e-11 Score=120.19 Aligned_cols=142 Identities=12% Similarity=0.158 Sum_probs=106.4
Q ss_pred cCceecccccceEEEEEecCCcEEEEEEec--ccc-cccHHHHHHHHHHHhcCC--CCcceeEEEEEEcC---CeeeEEE
Q 042902 432 ENNLIGRGGVASVYKARIQDGIEVAVKVFD--LQY-EGAFKSFDIECDMMKRIR--HRNLIKIISSCSND---DFKALVL 503 (599)
Q Consensus 432 ~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~ 503 (599)
..+.++.|.++.||++... +..+++|+.. ... ......+..|+++++.+. +..++++++++.+. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 4567899999999999876 4678888875 322 122356788999999887 45688999988776 4589999
Q ss_pred EccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCC--------------------------------------
Q 042902 504 EYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGY-------------------------------------- 545 (599)
Q Consensus 504 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~-------------------------------------- 545 (599)
||++|..+.+... ..++..++..++.+++++|..||...
T Consensus 121 e~v~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (359)
T 3dxp_A 121 EFVSGRVLWDQSL---PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAM 197 (359)
T ss_dssp ECCCCBCCCCTTC---TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHH
T ss_pred EecCCeecCCCcc---ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHH
Confidence 9999988754221 12567778889999999999999520
Q ss_pred -----------------CCCeEEccCCCCCeeecCCCc--EEEccccCCcc
Q 042902 546 -----------------SVPIIHCDLKPNNVLLDDNMV--AHLSDFGMAKP 577 (599)
Q Consensus 546 -----------------~~~iiH~dlk~~Nill~~~~~--~kl~DFGla~~ 577 (599)
...++|+|+++.||++++++. +.|+||+.|..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 198 DSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 257999999999999997753 68999999863
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=4.1e-11 Score=122.12 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=51.4
Q ss_pred cccccEEEccCCccCCCCCccc---cCcccccccccccccccccC----cccccCCCCcccccCCCCcccccCCchhhcc
Q 042902 240 LRVLVQIDLSMNNFSGFIPTTI---GDLKDLQYLFLEYNRLQGSI----PDSIGGLIDLKSLDLSNNNISGAIPISLEKL 312 (599)
Q Consensus 240 l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 312 (599)
+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.|+...-..+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 5666777776666653222222 24677777777777776532 3333456788888888888775444444431
Q ss_pred ccceEEEccccc
Q 042902 313 LDLKYINVSFNK 324 (599)
Q Consensus 313 ~~L~~l~l~~N~ 324 (599)
- ...+++++|+
T Consensus 331 l-g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L-PMKIDVSDSQ 341 (362)
T ss_dssp C-CSEEECCSBC
T ss_pred c-CCEEEecCCc
Confidence 1 3457888877
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=2e-10 Score=116.95 Aligned_cols=135 Identities=19% Similarity=0.211 Sum_probs=82.0
Q ss_pred CCCCCCcEeecCCCCCCCCCccccCCCcccEEeecCCCccccCccccc--ccccccEEEccC--CccCCC-----CCccc
Q 042902 191 GNLTSLRNLYLGSNQLTSIPSTLWNLKYILYLNLSSNSFTGPLPLEIG--NLRVLVQIDLSM--NNFSGF-----IPTTI 261 (599)
Q Consensus 191 ~~l~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~--N~l~~~-----~~~~~ 261 (599)
..+|+|+.|+|++|.-..++. + .+++|+.|++..|.++......+. .+++|+.|+|+. |...+. +...+
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 344555555555442112222 2 245666666666655433222332 566677776642 221111 01112
Q ss_pred --cCcccccccccccccccccCccccc---CCCCcccccCCCCcccccC----CchhhccccceEEEcccccCcc
Q 042902 262 --GDLKDLQYLFLEYNRLQGSIPDSIG---GLIDLKSLDLSNNNISGAI----PISLEKLLDLKYINVSFNKLEG 327 (599)
Q Consensus 262 --~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~l~l~~N~l~~ 327 (599)
..+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 3578999999999998764444443 5789999999999998643 3444568999999999998864
No 413
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.79 E-value=2.3e-08 Score=100.43 Aligned_cols=136 Identities=17% Similarity=0.205 Sum_probs=101.1
Q ss_pred CCCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCC----CcceeEEEEEEcCCeeeEEEE
Q 042902 429 GFSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRH----RNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 429 ~~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h----~niv~l~~~~~~~~~~~lv~e 504 (599)
.....+.++.|....||++ |..+++|+.... .....+..|.+++..+.+ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5566788999999999998 677888986432 223568889998888865 234555555 56789999
Q ss_pred ccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCC---------------------------------------
Q 042902 505 YMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGY--------------------------------------- 545 (599)
Q Consensus 505 ~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--------------------------------------- 545 (599)
|++|.++...... .++..++..++.++++.++.||...
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999988643321 2456666778888888888888321
Q ss_pred ---------------------CCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 546 ---------------------SVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 546 ---------------------~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
...++|+|++|.||+++++..+.|+||+.|..
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 23459999999999999976689999999863
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.72 E-value=2.9e-08 Score=98.89 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=99.3
Q ss_pred CceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCC-CCc--ceeEEEEEEcCC---eeeEEEEcc
Q 042902 433 NNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRN--LIKIISSCSNDD---FKALVLEYM 506 (599)
Q Consensus 433 ~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 506 (599)
.+.++.|.+..||++. ..+++|+.... .....+..|+++++.+. +.. +.++++++...+ ..|+||||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4578999999999863 56888986432 34567889999998873 322 445555544333 458999999
Q ss_pred CCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcC------------------------------------------
Q 042902 507 PHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFG------------------------------------------ 544 (599)
Q Consensus 507 ~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~------------------------------------------ 544 (599)
+|.++.+.... .++..++..++.++++.+..+|..
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888653322 256667778888888888888841
Q ss_pred -------------CCCCeEEccCCCCCeeecC--CCcEEEccccCCcc
Q 042902 545 -------------YSVPIIHCDLKPNNVLLDD--NMVAHLSDFGMAKP 577 (599)
Q Consensus 545 -------------~~~~iiH~dlk~~Nill~~--~~~~kl~DFGla~~ 577 (599)
....++|+|++|.||++++ ...+.|+||+.|..
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~ 223 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI 223 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence 1245899999999999998 45688999999864
No 415
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.70 E-value=1.3e-07 Score=93.29 Aligned_cols=140 Identities=18% Similarity=0.094 Sum_probs=94.9
Q ss_pred CcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCC---cceeEEEEEEcCCeeeEEEEccC
Q 042902 431 SENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHR---NLIKIISSCSNDDFKALVLEYMP 507 (599)
Q Consensus 431 ~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~ 507 (599)
...+.++.|.++.||++...+|+.++||+...........|..|++.|+.+++. .+++++++. ..++||||++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 345789999999999999888999999997544333346789999999999865 578888764 3689999999
Q ss_pred CCChhh-----------hhhcCCC--------------------cCCHHHHH---HH-----------------HHHHHH
Q 042902 508 HGSLEK-----------CLYSSNY--------------------ILDIFQRL---NI-----------------MIDVAS 536 (599)
Q Consensus 508 ~g~L~~-----------~l~~~~~--------------------~~~~~~~~---~i-----------------~~~i~~ 536 (599)
++++.. .+|.... .-+|.... ++ ...+-+
T Consensus 94 g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~~~~~~ 173 (288)
T 3d1u_A 94 ERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDVRLVEK 173 (288)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 987531 1222110 02333211 00 111122
Q ss_pred HHHHHh----cCCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 537 ALEYLH----FGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 537 ~l~~lH----~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
.++.+. ....+.++|+|+.+.||+++. +.+.|+|| .+.
T Consensus 174 l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~-~~~~~iD~-~~~ 215 (288)
T 3d1u_A 174 VLDALDHLAGDPEPPARIHGDLWNGNVLWQD-DGAVVIDP-AAH 215 (288)
T ss_dssp HHHTHHHHTCSCCCCEEECSCCSGGGEEEET-TEEEECSC-CCE
T ss_pred HHHHHHHHhcCCCCCcceECCCCcCcEEEeC-CCeEEEcC-CcC
Confidence 222232 123578999999999999988 45889999 654
No 416
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.62 E-value=1.8e-07 Score=93.24 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=95.1
Q ss_pred CceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCC---cceeEEEEEE-cCCeeeEEEEccCC
Q 042902 433 NNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHR---NLIKIISSCS-NDDFKALVLEYMPH 508 (599)
Q Consensus 433 ~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 508 (599)
.+.++.|....||+. |..+++|+.. .......+..|.++|..+.+. .+.+.+.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456788888899987 5778888853 223456789999999998752 3667777774 45567899999999
Q ss_pred CChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcC--------------------------------------------
Q 042902 509 GSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFG-------------------------------------------- 544 (599)
Q Consensus 509 g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~-------------------------------------------- 544 (599)
.++.+.... .++..++..++.++++.|..||..
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 888653211 123344445555555555555521
Q ss_pred -------------CCCCeEEccCCCCCeeecC---CCc-EEEccccCCcc
Q 042902 545 -------------YSVPIIHCDLKPNNVLLDD---NMV-AHLSDFGMAKP 577 (599)
Q Consensus 545 -------------~~~~iiH~dlk~~Nill~~---~~~-~kl~DFGla~~ 577 (599)
....++|+|+++.||++++ ++. +.|+||+.|..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2346799999999999987 455 58999998863
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=5.7e-09 Score=95.86 Aligned_cols=93 Identities=19% Similarity=0.138 Sum_probs=52.3
Q ss_pred CccccCCCCCCEEEccCC-cCCcc----cCccccCCCCCCEEEcccccccccC----ChhhhcCCCCcEEEeeCCccCCC
Q 042902 115 PEEISNLTNLTTIYLGGN-KLNGS----IPIALDKLQKLQLLSLEDNQLEGSI----PDDLCRLAALFLLDLGGNKLSGF 185 (599)
Q Consensus 115 ~~~~~~l~~L~~L~L~~N-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~ 185 (599)
...+...++|++|+|++| .|... +...+...++|++|+|++|.|.+.. ...+...++|++|+|++|.|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345566778888888887 77632 2334556677777777777776422 23344445666666666666532
Q ss_pred C----CcccCCCCCCcEeec--CCCCCC
Q 042902 186 V----PACFGNLTSLRNLYL--GSNQLT 207 (599)
Q Consensus 186 ~----~~~~~~l~~L~~L~L--~~N~l~ 207 (599)
. ...+...++|++|+| ++|.|+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 1 223333344444444 444444
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=5.7e-09 Score=95.88 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=58.8
Q ss_pred CccccCCCCCCEEeccCc-cCcccCCCcccccccCCCCCCcEEEcccCcccccCChhhhcccccceEEEccCCcccccCC
Q 042902 37 PNTFGNLRNLKRLSLNYN-YLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLDGILPRAIGNLSQSMEVFFMFNCNISGSIP 115 (599)
Q Consensus 37 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~~l~~l~l~~n~i~~~~~ 115 (599)
...+...+.|++|+|++| .|...... .+...+...++|++|+|++|.|...-..+++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~-~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~--------------------- 86 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLK-ACAEALKTNTYVKKFSIVGTRSNDPVAFALA--------------------- 86 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHH-HHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------------
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHH-HHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------------
Confidence 344555666666666666 66542211 1112345556666666666666532111111
Q ss_pred ccccCCCCCCEEEccCCcCCcc----cCccccCCCCCCEEEc--ccccccccC----ChhhhcCCCCcEEEeeCCcc
Q 042902 116 EEISNLTNLTTIYLGGNKLNGS----IPIALDKLQKLQLLSL--EDNQLEGSI----PDDLCRLAALFLLDLGGNKL 182 (599)
Q Consensus 116 ~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L--~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l 182 (599)
+.+...++|++|+|++|.|+.. +..++...++|++|+| ++|.|.... ...+...++|+.|+|++|.+
T Consensus 87 ~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 87 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1222334555666666655532 2233444555555555 555554321 22233334555555555544
No 419
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.56 E-value=3.8e-07 Score=89.08 Aligned_cols=136 Identities=17% Similarity=0.078 Sum_probs=98.3
Q ss_pred ceecccccc-eEEEEEec-CCcEEEEEEecccccccHHHHHHHHHHHhcCC-CCcceeEEEEEEcCCeeeEEEEccCCCC
Q 042902 434 NLIGRGGVA-SVYKARIQ-DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALVLEYMPHGS 510 (599)
Q Consensus 434 ~~ig~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 510 (599)
+.+..|..| .||+.... ++..+++|+.... ....+..|...|+.+. +--+.++++++.+.+..++|||+++|.+
T Consensus 30 ~~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~ 106 (272)
T 4gkh_A 30 ARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT 106 (272)
T ss_dssp EEEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence 345566665 69988765 4678999986533 3456788999888774 3347788999999999999999999988
Q ss_pred hhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcC----------------------------------------------
Q 042902 511 LEKCLYSSNYILDIFQRLNIMIDVASALEYLHFG---------------------------------------------- 544 (599)
Q Consensus 511 L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---------------------------------------------- 544 (599)
+.+...... .....++.++++.+.-||..
T Consensus 107 ~~~~~~~~~-----~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (272)
T 4gkh_A 107 AFQVLEEYP-----DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWK 181 (272)
T ss_dssp HHHHHHHCG-----GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHH
T ss_pred ccccccCCH-----HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHH
Confidence 876543321 12234666777777777721
Q ss_pred ---------CCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 545 ---------YSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 545 ---------~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
....++|+|+.+.||++++++.+-|+||+.|..
T Consensus 182 ~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 182 EMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 012379999999999999887778999998863
No 420
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=7.5e-09 Score=100.02 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=36.7
Q ss_pred cccccEEEccCCccCCC--CCccccCcccccccccccccccccCcccccCCC--CcccccCCCCcccccCCc-------h
Q 042902 240 LRVLVQIDLSMNNFSGF--IPTTIGDLKDLQYLFLEYNRLQGSIPDSIGGLI--DLKSLDLSNNNISGAIPI-------S 308 (599)
Q Consensus 240 l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~-------~ 308 (599)
+++|+.|+|++|+|+++ +|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|++++..|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 44444444444444442 223334445555555555555433 1122222 566666666666554442 2
Q ss_pred hhccccceEEE
Q 042902 309 LEKLLDLKYIN 319 (599)
Q Consensus 309 ~~~l~~L~~l~ 319 (599)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44556666543
No 421
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=1.6e-08 Score=97.67 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=29.7
Q ss_pred cCCCCcEEEeeCCccCCCC--CcccCCCCCCcEeecCCCCCCCCCccccCCC--cccEEeecCCCccc
Q 042902 168 RLAALFLLDLGGNKLSGFV--PACFGNLTSLRNLYLGSNQLTSIPSTLWNLK--YILYLNLSSNSFTG 231 (599)
Q Consensus 168 ~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~ip~~~~~l~--~L~~L~Ls~N~l~~ 231 (599)
.+++|+.|+|++|+|+++. +..+..+++|+.|+|++|+|+.+. .+..+. +|++|+|++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcc
Confidence 3455555555555555422 233444555555555555555441 122222 45555555555543
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.48 E-value=6.3e-07 Score=91.43 Aligned_cols=141 Identities=11% Similarity=0.126 Sum_probs=90.5
Q ss_pred CcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCc--ceeEEEEEEcC-CeeeEEEEccC
Q 042902 431 SENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN--LIKIISSCSND-DFKALVLEYMP 507 (599)
Q Consensus 431 ~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~~ 507 (599)
...+.++.|....+|+... +|..+++|+.... ..+..|+.++..+.... +.++++++... +..++||||++
T Consensus 44 ~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~ 117 (362)
T 3ovc_A 44 SDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQ 117 (362)
T ss_dssp EEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCC
T ss_pred ceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecC
Confidence 3456788999999999876 5889999987432 25788888888886433 56777777654 57899999999
Q ss_pred CCChhhh------------------hhcCC----C------------cCCHHHH---------------------HHHHH
Q 042902 508 HGSLEKC------------------LYSSN----Y------------ILDIFQR---------------------LNIMI 532 (599)
Q Consensus 508 ~g~L~~~------------------l~~~~----~------------~~~~~~~---------------------~~i~~ 532 (599)
|.++.+. ++... . .-+|... .....
T Consensus 118 G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (362)
T 3ovc_A 118 GVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQ 197 (362)
T ss_dssp SEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 8765421 11100 0 0011111 01111
Q ss_pred HHHHHHHHHhcC-CCCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 533 DVASALEYLHFG-YSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 533 ~i~~~l~~lH~~-~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
.+.....++... ..+.++|+|+++.||++++++.+.|+||+.+..
T Consensus 198 ~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 198 ALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 122222233211 125689999999999998877888999998863
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.48 E-value=2.3e-07 Score=94.61 Aligned_cols=81 Identities=5% Similarity=-0.011 Sum_probs=57.0
Q ss_pred Ccee-cccccceEEEEEec-------CCcEEEEEEecccc---cccHHHHHHHHHHHhcCC-C--CcceeEEEEEEcC--
Q 042902 433 NNLI-GRGGVASVYKARIQ-------DGIEVAVKVFDLQY---EGAFKSFDIECDMMKRIR-H--RNLIKIISSCSND-- 496 (599)
Q Consensus 433 ~~~i-g~G~~g~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~e~~~l~~l~-h--~niv~l~~~~~~~-- 496 (599)
.+.| +.|....+|+.... ++..+++|+..... ......+..|+++++.+. + -.+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999998764 26788999875432 111245677888888774 2 3577888887655
Q ss_pred -CeeeEEEEccCCCChhh
Q 042902 497 -DFKALVLEYMPHGSLEK 513 (599)
Q Consensus 497 -~~~~lv~e~~~~g~L~~ 513 (599)
+..++||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 35789999999877653
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=98.23 E-value=3.9e-06 Score=86.81 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=50.2
Q ss_pred CceecccccceEEEEEec-CCcEEEEEEeccccc-------ccHHHHHHHHHHHhcCCC--C-cceeEEEEEEcCCeeeE
Q 042902 433 NNLIGRGGVASVYKARIQ-DGIEVAVKVFDLQYE-------GAFKSFDIECDMMKRIRH--R-NLIKIISSCSNDDFKAL 501 (599)
Q Consensus 433 ~~~ig~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~e~~~l~~l~h--~-niv~l~~~~~~~~~~~l 501 (599)
.+.+|.|.++.||++... +++.|+||....... ....++..|.++++.+.. | .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 467999999999999764 478899998643211 123456778888887742 3 34455544 3445689
Q ss_pred EEEccCCC
Q 042902 502 VLEYMPHG 509 (599)
Q Consensus 502 v~e~~~~g 509 (599)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999874
No 425
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=98.13 E-value=8.5e-06 Score=82.22 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=79.4
Q ss_pred ceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCC--CCcceeEEE------EEEcCCeeeEEEEc
Q 042902 434 NLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR--HRNLIKIIS------SCSNDDFKALVLEY 505 (599)
Q Consensus 434 ~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~l~~------~~~~~~~~~lv~e~ 505 (599)
+.++.|..+.||++...+| .+++|+.... ......|..++..+. .-.+++++. +....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 4566677899999987654 5899998642 123334455444442 112333332 12345678999999
Q ss_pred cCCCChh-----h---------hhhc----C--C-------CcCCHHHHH------------------------------
Q 042902 506 MPHGSLE-----K---------CLYS----S--N-------YILDIFQRL------------------------------ 528 (599)
Q Consensus 506 ~~~g~L~-----~---------~l~~----~--~-------~~~~~~~~~------------------------------ 528 (599)
++|.++. . .+|. . . ....|....
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9987542 0 1111 0 0 011232110
Q ss_pred -HHHHHHHHHHHHHhc----------CCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 529 -NIMIDVASALEYLHF----------GYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 529 -~i~~~i~~~l~~lH~----------~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
.+...+.+++.+++. .....++|+|+++.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 111223445666652 125789999999999999888899999999885
No 426
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=98.09 E-value=2.3e-05 Score=77.79 Aligned_cols=137 Identities=14% Similarity=0.096 Sum_probs=93.3
Q ss_pred cCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCC---CCcceeEEEEEEcCCeeeEEEEccCC
Q 042902 432 ENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR---HRNLIKIISSCSNDDFKALVLEYMPH 508 (599)
Q Consensus 432 ~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~ 508 (599)
..+.|+.|.+..+|+... ++..+++|+.... ....|..|.+.|+.+. ...++++++++...+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 346789999999999886 4678889987532 3567888999888874 36788899998888889999999999
Q ss_pred CChhh-----------hhhcCCC---------------------cCCHHHHH---HHHH----------------HHHH-
Q 042902 509 GSLEK-----------CLYSSNY---------------------ILDIFQRL---NIMI----------------DVAS- 536 (599)
Q Consensus 509 g~L~~-----------~l~~~~~---------------------~~~~~~~~---~i~~----------------~i~~- 536 (599)
..+.. .+|.... .-+|.... ++.. .+++
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 86521 1222110 12454321 1111 1111
Q ss_pred HHHHHh-cCCCCCeEEccCCCCCeeecCCCcEEEcccc
Q 042902 537 ALEYLH-FGYSVPIIHCDLKPNNVLLDDNMVAHLSDFG 573 (599)
Q Consensus 537 ~l~~lH-~~~~~~iiH~dlk~~Nill~~~~~~kl~DFG 573 (599)
....+. ....+.++|+|+.+.|++++.++ +.|.||+
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 122332 12357899999999999999887 8899984
No 427
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=2.1e-06 Score=76.92 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=36.5
Q ss_pred CCCEEEccCCcCCcccCccccCCCCCCEEEccccc-ccccCChhhhcC----CCCcEEEeeCCc-cCCCCCcccCCCCCC
Q 042902 123 NLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDNQ-LEGSIPDDLCRL----AALFLLDLGGNK-LSGFVPACFGNLTSL 196 (599)
Q Consensus 123 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 196 (599)
+|+.|||+++.|+..--..+.++++|++|+|++|. |++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555543333344455555555555553 443222223332 235555555542 443322333444444
Q ss_pred cEeecCCC
Q 042902 197 RNLYLGSN 204 (599)
Q Consensus 197 ~~L~L~~N 204 (599)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 428
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=1.6e-06 Score=77.66 Aligned_cols=84 Identities=13% Similarity=0.015 Sum_probs=50.6
Q ss_pred CcccEEeecCCCccccCcccccccccccEEEccCCc-cCCCCCccccCc----cccccccccccc-ccccCcccccCCCC
Q 042902 217 KYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNN-FSGFIPTTIGDL----KDLQYLFLEYNR-LQGSIPDSIGGLID 290 (599)
Q Consensus 217 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~L~~N~-l~~~~~~~~~~l~~ 290 (599)
..|+.||++++.++...-..+.++++|+.|+|++|. |++..-..++.+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356677777766665555556666777777777764 554333334443 357777777763 66544445566667
Q ss_pred cccccCCCCc
Q 042902 291 LKSLDLSNNN 300 (599)
Q Consensus 291 L~~L~L~~N~ 300 (599)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776664
No 429
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.91 E-value=3.7e-05 Score=75.56 Aligned_cols=78 Identities=13% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCC---CcceeEEEEEEcCCeeeEEEEcc
Q 042902 430 FSENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRH---RNLIKIISSCSNDDFKALVLEYM 506 (599)
Q Consensus 430 ~~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h---~niv~l~~~~~~~~~~~lv~e~~ 506 (599)
....+.+|.|..+.||+.+..||+.|.+|+...........|..|++.|+.+.- --+++++++. ..++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEee
Confidence 445578899999999999999999999998764443334568889998887742 2345555542 347999999
Q ss_pred CCCCh
Q 042902 507 PHGSL 511 (599)
Q Consensus 507 ~~g~L 511 (599)
+++..
T Consensus 93 ~~~~~ 97 (288)
T 3f7w_A 93 DERPP 97 (288)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 88754
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.88 E-value=4.9e-05 Score=79.08 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=47.3
Q ss_pred cCceecccccceEEEEEecCCcEEEEEEeccc-----c--c--ccHHHHHHHHHHHh-cCCCCcceeEEEEEEcCCeeeE
Q 042902 432 ENNLIGRGGVASVYKARIQDGIEVAVKVFDLQ-----Y--E--GAFKSFDIECDMMK-RIRHRNLIKIISSCSNDDFKAL 501 (599)
Q Consensus 432 ~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~-----~--~--~~~~~~~~e~~~l~-~l~h~niv~l~~~~~~~~~~~l 501 (599)
..+.+|.|..+.||++.. +++.++||..... . . .....+..|+..+. ......+++++.+. .+..++
T Consensus 38 ~i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~l 114 (420)
T 2pyw_A 38 VIKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALI 114 (420)
T ss_dssp EEEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEE
T ss_pred EEEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEE
Confidence 346789999999999965 4778999953221 0 1 12234444544332 22334667777765 466799
Q ss_pred EEEcc-CC
Q 042902 502 VLEYM-PH 508 (599)
Q Consensus 502 v~e~~-~~ 508 (599)
||||+ ++
T Consensus 115 v~e~l~~g 122 (420)
T 2pyw_A 115 GMRYLEPP 122 (420)
T ss_dssp EECCCCTT
T ss_pred EEeecCCc
Confidence 99999 76
No 431
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.58 E-value=0.00043 Score=69.38 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=72.2
Q ss_pred ceecccccce-EEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCC--CCcceeEEEEEEcCCeeeEEEEccCCCC
Q 042902 434 NLIGRGGVAS-VYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR--HRNLIKIISSCSNDDFKALVLEYMPHGS 510 (599)
Q Consensus 434 ~~ig~G~~g~-Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~--h~niv~l~~~~~~~~~~~lv~e~~~~g~ 510 (599)
+.++.|+... +|+....+|..+++|....... ..+..|+.++..+. .-.+.+++.+....+ ++|||++++..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 4565565544 6777654477788887543321 22334555555553 123566776643333 78999997766
Q ss_pred hhhhhhcCC-------------------------CcCCHHHHH--------------------HHHHHHHHHHHHHh---
Q 042902 511 LEKCLYSSN-------------------------YILDIFQRL--------------------NIMIDVASALEYLH--- 542 (599)
Q Consensus 511 L~~~l~~~~-------------------------~~~~~~~~~--------------------~i~~~i~~~l~~lH--- 542 (599)
+.+++.... ..++..... .....+.+.+..+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 543332110 011111000 00001112222221
Q ss_pred cCCCCCeEEccCCCCCeeecCC----CcEEEccccCCcc
Q 042902 543 FGYSVPIIHCDLKPNNVLLDDN----MVAHLSDFGMAKP 577 (599)
Q Consensus 543 ~~~~~~iiH~dlk~~Nill~~~----~~~kl~DFGla~~ 577 (599)
......++|+|+.+.||+++.+ +.+.|+||+.|..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1125679999999999999875 6899999998863
No 432
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.50 E-value=0.00061 Score=67.86 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=85.3
Q ss_pred cHHHHHHHhCCCCc-----CceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCc--ceeEEE
Q 042902 419 THLELFQATNGFSE-----NNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN--LIKIIS 491 (599)
Q Consensus 419 ~~~~~~~~~~~~~~-----~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n--iv~l~~ 491 (599)
+..++......|.. .+.|+.|....+|+....+| .+++|+..... ..+.+..|+.++..+.... +.+++.
T Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~ 84 (322)
T 2ppq_A 8 TEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLP 84 (322)
T ss_dssp CHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred CHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccC
Confidence 33444444444543 34567788889999987655 68889886531 1234455676666553111 333332
Q ss_pred E------EEcCCeeeEEEEccCCCChhh--------------hhhcC----CC-------cCCHHHHHH-----------
Q 042902 492 S------CSNDDFKALVLEYMPHGSLEK--------------CLYSS----NY-------ILDIFQRLN----------- 529 (599)
Q Consensus 492 ~------~~~~~~~~lv~e~~~~g~L~~--------------~l~~~----~~-------~~~~~~~~~----------- 529 (599)
. ....+..+++|||++|..+.. .+|.. .. ...|.....
T Consensus 85 ~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 164 (322)
T 2ppq_A 85 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK 164 (322)
T ss_dssp BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred CCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhh
Confidence 1 123456789999999865421 01110 00 011222100
Q ss_pred -HHHHHHHHHHHHhcC----CCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 530 -IMIDVASALEYLHFG----YSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 530 -i~~~i~~~l~~lH~~----~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
+...+.+.+++++.. ...+++|+|+++.||+++++..+.++||+.+.
T Consensus 165 ~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 165 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011244455555422 24579999999999999987666899999875
No 433
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=3e-05 Score=70.77 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=50.5
Q ss_pred cccCCCCCCEEEccCC-cCCc----ccCccccCCCCCCEEEcccccccccC----ChhhhcCCCCcEEEeeCCccCCCCC
Q 042902 117 EISNLTNLTTIYLGGN-KLNG----SIPIALDKLQKLQLLSLEDNQLEGSI----PDDLCRLAALFLLDLGGNKLSGFVP 187 (599)
Q Consensus 117 ~~~~l~~L~~L~L~~N-~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~ 187 (599)
.+.+-+.|++|+|++| .|.. .+..++..-+.|++|+|++|+|.+.. .+.+..-+.|+.|+|++|.|.+..-
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567888888875 6653 12344566677888888888776432 2334455667777777777654211
Q ss_pred ----cccCCCCCCcEeecCCC
Q 042902 188 ----ACFGNLTSLRNLYLGSN 204 (599)
Q Consensus 188 ----~~~~~l~~L~~L~L~~N 204 (599)
+++..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 22333344555555543
No 434
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.48 E-value=0.00033 Score=69.17 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=75.3
Q ss_pred CcCceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcc-eeEEEEEEcCCeeeEEEEcc-CC
Q 042902 431 SENNLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNL-IKIISSCSNDDFKALVLEYM-PH 508 (599)
Q Consensus 431 ~~~~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~ 508 (599)
...+.++.|....+|++ ..+++|+........ .....|+.+++.+....+ .++++++ .+.-++|+||+ +|
T Consensus 21 ~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~-~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g 92 (301)
T 3dxq_A 21 TGPLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY-INRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGA 92 (301)
T ss_dssp CSCEEEESCSSEEEEEE-----TTEEEEEECC----C-CCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTC
T ss_pred cceeEcCCcccccccee-----eeEEEECCCCCccce-eCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCC
Confidence 33678999999999998 568888875432211 122457777766642222 4555543 33457899999 65
Q ss_pred CChhhh-hhcCCCcCCHHHHHHHHHHHHHHHHHHhc--------------------------------------------
Q 042902 509 GSLEKC-LYSSNYILDIFQRLNIMIDVASALEYLHF-------------------------------------------- 543 (599)
Q Consensus 509 g~L~~~-l~~~~~~~~~~~~~~i~~~i~~~l~~lH~-------------------------------------------- 543 (599)
.++... +.. +..++.++++.|+-+|.
T Consensus 93 ~~l~~~~~~~---------~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (301)
T 3dxq_A 93 QTMSPEKFKT---------RPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVR 163 (301)
T ss_dssp EECCHHHHHH---------STTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHH
T ss_pred ccCCHhhHhh---------hHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHH
Confidence 544310 000 00122222222222221
Q ss_pred ------CCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 544 ------GYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 544 ------~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
.....++|+|+.+.||+ ..++.+.++||..|.
T Consensus 164 ~~l~~~~~~~~l~HgDl~~~Nil-~~~~~~~lID~e~a~ 201 (301)
T 3dxq_A 164 SALAAHPLPLAACHCDPLCENFL-DTGERMWIVDWEYSG 201 (301)
T ss_dssp HHHHSSCCCCEEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred HHHHhcCCCceeeccCCCcCCEE-ECCCCEEEEeccccc
Confidence 12345899999999999 566678999999876
No 435
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=2.6e-05 Score=71.18 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=18.8
Q ss_pred CCCCCCEEeccCc-cCcccCCCcccccccCCCCCCcEEEcccCccc
Q 042902 42 NLRNLKRLSLNYN-YLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLD 86 (599)
Q Consensus 42 ~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~ 86 (599)
+-+.|++|+|++| +|...... .+..++..-+.|+.|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~-~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIR-SLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHH-HHHHHHTTCSCCCEEECTTSCCB
T ss_pred cCCCccEEECCCCCCCCHHHHH-HHHHHHhhCCCcCEEEccCCCCC
Confidence 3344555555553 44322110 11123344445555555555554
No 436
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=97.46 E-value=0.00017 Score=75.00 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=50.0
Q ss_pred CceecccccceEEEEEecC--------CcEEEEEEecccccccHHHHHHHHHHHhcCCCCc-ceeEEEEEEcCCeeeEEE
Q 042902 433 NNLIGRGGVASVYKARIQD--------GIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN-LIKIISSCSNDDFKALVL 503 (599)
Q Consensus 433 ~~~ig~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 503 (599)
.+.|+.|....||++...+ +..+++|+.... .....+..|..+++.+...+ .+++++.+.. .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 3578888889999998753 578999998432 11245567888888774223 3567766532 3899
Q ss_pred EccCCCCh
Q 042902 504 EYMPHGSL 511 (599)
Q Consensus 504 e~~~~g~L 511 (599)
||++|.++
T Consensus 152 e~l~G~~l 159 (429)
T 1nw1_A 152 EYIPSRPL 159 (429)
T ss_dssp CCCCEEEC
T ss_pred EEeCCccc
Confidence 99987544
No 437
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.41 E-value=0.00054 Score=69.73 Aligned_cols=138 Identities=14% Similarity=0.170 Sum_probs=81.8
Q ss_pred ceecccccceEEEEEec--------CCcEEEEEEecccccccHHHHHHHHHHHhcCC-CCcceeEEEEEEcCCeeeEEEE
Q 042902 434 NLIGRGGVASVYKARIQ--------DGIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 434 ~~ig~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 504 (599)
+.+..|-...+|++... +++.+.+|+..... .......+|.++++.+. +.-..++++++.. .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~~-~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAIL-QGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCcc-chHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 56777888899999875 25789999864322 23456678999888774 3334566766543 39999
Q ss_pred ccCCCChhhh-----------------hhcCC----CcCC--HHHHHHHHHHHH-------------------HHHHHHh
Q 042902 505 YMPHGSLEKC-----------------LYSSN----YILD--IFQRLNIMIDVA-------------------SALEYLH 542 (599)
Q Consensus 505 ~~~~g~L~~~-----------------l~~~~----~~~~--~~~~~~i~~~i~-------------------~~l~~lH 542 (599)
|++|.++..- +|... .... +.+..++..++. +.+.++.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 9998665311 12111 1122 223333333321 1223332
Q ss_pred ----c-CCCCCeEEccCCCCCeeecCC----CcEEEccccCCc
Q 042902 543 ----F-GYSVPIIHCDLKPNNVLLDDN----MVAHLSDFGMAK 576 (599)
Q Consensus 543 ----~-~~~~~iiH~dlk~~Nill~~~----~~~kl~DFGla~ 576 (599)
. .....++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 1 124578999999999999876 789999999886
No 438
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.34 E-value=0.00072 Score=67.52 Aligned_cols=139 Identities=12% Similarity=0.127 Sum_probs=81.6
Q ss_pred ceecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCC--cceeEEEE-----EEcCCeeeEEEEcc
Q 042902 434 NLIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHR--NLIKIISS-----CSNDDFKALVLEYM 506 (599)
Q Consensus 434 ~~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~--niv~l~~~-----~~~~~~~~lv~e~~ 506 (599)
..++ |....||++...+|+.+++|+..... .....+..|..++..+... .+++++.. ....+..++||||+
T Consensus 32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i 109 (328)
T 1zyl_A 32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSV 109 (328)
T ss_dssp EEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECC
T ss_pred Eeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEec
Confidence 4566 88889999887778889999986432 1345666788777766421 24444442 12245668899999
Q ss_pred CCCChhh-----h---------hhc----C----CCcCCHHHH----HHH---------------HHHHHHHHHHHhc--
Q 042902 507 PHGSLEK-----C---------LYS----S----NYILDIFQR----LNI---------------MIDVASALEYLHF-- 543 (599)
Q Consensus 507 ~~g~L~~-----~---------l~~----~----~~~~~~~~~----~~i---------------~~~i~~~l~~lH~-- 543 (599)
+|..+.. . +|. . ....++... ..+ ...+.+.++.+..
T Consensus 110 ~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 189 (328)
T 1zyl_A 110 GGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHW 189 (328)
T ss_dssp CCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8854421 0 111 0 011222110 000 1111122333321
Q ss_pred --CCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 544 --GYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 544 --~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
.....++|+|+++.||+++ + .+.++||+.+.
T Consensus 190 ~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 190 REDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp CSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred hhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 1245689999999999999 4 89999998876
No 439
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.23 E-value=0.00049 Score=58.50 Aligned_cols=54 Identities=26% Similarity=0.249 Sum_probs=29.3
Q ss_pred EeecCCCCCC--CCCccccCCCcccEEeecCCCccccCcccccccccccEEEccCCcc
Q 042902 198 NLYLGSNQLT--SIPSTLWNLKYILYLNLSSNSFTGPLPLEIGNLRVLVQIDLSMNNF 253 (599)
Q Consensus 198 ~L~L~~N~l~--~ip~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 253 (599)
.++.+++.++ .+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5556666665 5654332 2455555555555555455555555555555555544
No 440
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00043 Score=58.89 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=41.8
Q ss_pred CEEEccCcccc--ccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEcccCccc
Q 042902 23 SRLELEMNSFY--GFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSNNSLD 86 (599)
Q Consensus 23 ~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~i~ 86 (599)
+.++.+++.++ . +|..+. .+|++|+|++|+|+.++.. .|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~-vP~~lp--~~l~~L~Ls~N~l~~l~~~-----~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWAS-LPTAFP--VDTTELVLTGNNLTALPPG-----LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTT-SCSCCC--TTCSEEECTTSCCSSCCTT-----TGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCcccc-CCCCCC--cCCCEEECCCCcCCccChh-----hhhhccccCEEEecCCCee
Confidence 46788888887 5 443332 3588888888888888875 5788888888888888775
No 441
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=97.16 E-value=0.0011 Score=69.20 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=47.7
Q ss_pred CceecccccceEEEEEecC-CcEEEEEEecccccccHHHHHHHHHHHhcCCCCcc-eeEEEEEEcCCeeeEEEEccCCCC
Q 042902 433 NNLIGRGGVASVYKARIQD-GIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNL-IKIISSCSNDDFKALVLEYMPHGS 510 (599)
Q Consensus 433 ~~~ig~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g~ 510 (599)
.+.|+.|-...+|++...+ +..+++|+........ -+-..|..+++.+...++ .++++++. + .+||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~~-idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDEI-INREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCSC-SCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhhh-cCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence 3578888889999998865 5788999875432211 111468888887764334 56777662 2 35999998755
Q ss_pred h
Q 042902 511 L 511 (599)
Q Consensus 511 L 511 (599)
+
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 4
No 442
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=97.07 E-value=0.0011 Score=67.58 Aligned_cols=73 Identities=10% Similarity=0.215 Sum_probs=43.9
Q ss_pred ceecccccceEEEEEecC---------CcEEEEEEecccccccHHHHHHHHHHHhcCCCCc-ceeEEEEEEcCCeeeEEE
Q 042902 434 NLIGRGGVASVYKARIQD---------GIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRN-LIKIISSCSNDDFKALVL 503 (599)
Q Consensus 434 ~~ig~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 503 (599)
+.++.|....+|++...+ +..+++|+....... ......|.++++.+.... +.++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 467788888999998754 268899987543221 112356777777764223 44666544 2 37899
Q ss_pred EccCCCCh
Q 042902 504 EYMPHGSL 511 (599)
Q Consensus 504 e~~~~g~L 511 (599)
||++|.++
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99988544
No 443
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.87 E-value=0.0055 Score=61.44 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=28.2
Q ss_pred CCCeEEccCCCCCeeecCCCcEEEccccCCcc
Q 042902 546 SVPIIHCDLKPNNVLLDDNMVAHLSDFGMAKP 577 (599)
Q Consensus 546 ~~~iiH~dlk~~Nill~~~~~~kl~DFGla~~ 577 (599)
...++|+|+.+.||++++++.+.++||+.+..
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~ 236 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPML 236 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence 45799999999999999888899999987753
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.75 E-value=0.0025 Score=65.05 Aligned_cols=139 Identities=16% Similarity=0.170 Sum_probs=81.8
Q ss_pred ceecccccceEEEEEecC--------CcEEEEEEecccccc------------------cHHHHHHHHHHHhcCC-CCcc
Q 042902 434 NLIGRGGVASVYKARIQD--------GIEVAVKVFDLQYEG------------------AFKSFDIECDMMKRIR-HRNL 486 (599)
Q Consensus 434 ~~ig~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~------------------~~~~~~~e~~~l~~l~-h~ni 486 (599)
+.+..|-...+|++...+ +..|.+++.-...+. ..+....|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456667788899988753 367888887433211 1122335888887774 4445
Q ss_pred eeEEEEEEcCCeeeEEEEccCCCChhhh-----------------hhcCC----CcCCH--HHHHHHHHHHH--------
Q 042902 487 IKIISSCSNDDFKALVLEYMPHGSLEKC-----------------LYSSN----YILDI--FQRLNIMIDVA-------- 535 (599)
Q Consensus 487 v~l~~~~~~~~~~~lv~e~~~~g~L~~~-----------------l~~~~----~~~~~--~~~~~i~~~i~-------- 535 (599)
.++++++.. .+|+||++|-+|..- +|... ....| ....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 677776642 289999997555211 12211 11221 12222332221
Q ss_pred --------------HHHH----HHhc-CCCCCeEEccCCCCCeeecCC------CcEEEccccCCc
Q 042902 536 --------------SALE----YLHF-GYSVPIIHCDLKPNNVLLDDN------MVAHLSDFGMAK 576 (599)
Q Consensus 536 --------------~~l~----~lH~-~~~~~iiH~dlk~~Nill~~~------~~~kl~DFGla~ 576 (599)
+-+. ++.. .....++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 1122 2221 234578999999999999876 789999998876
No 445
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=96.11 E-value=0.0059 Score=62.94 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=47.4
Q ss_pred ceecccccceEEEEEecC--------CcEEEEEEecccccccHHHHHHHHHHHhcCC-CCcceeEEEEEEcCCeeeEEEE
Q 042902 434 NLIGRGGVASVYKARIQD--------GIEVAVKVFDLQYEGAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALVLE 504 (599)
Q Consensus 434 ~~ig~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 504 (599)
+.+..|-...+|++...+ ++.+++|+....... .-+-.+|.++++.+. +.-..++++.+. -++|||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t~~-~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~e 150 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHVGK-FYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEE 150 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC-C-CCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCcch-hcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEE
Confidence 567778888999998763 578999987543221 112245777777664 333456665432 378999
Q ss_pred ccCCCCh
Q 042902 505 YMPHGSL 511 (599)
Q Consensus 505 ~~~~g~L 511 (599)
|++|.++
T Consensus 151 fI~G~~l 157 (424)
T 3mes_A 151 FIDGEPL 157 (424)
T ss_dssp CCCSEEC
T ss_pred EeCCccC
Confidence 9998664
No 446
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=93.25 E-value=0.092 Score=53.76 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=24.7
Q ss_pred CeEEccCCCCCeee------cCCCcEEEccccCCc
Q 042902 548 PIIHCDLKPNNVLL------DDNMVAHLSDFGMAK 576 (599)
Q Consensus 548 ~iiH~dlk~~Nill------~~~~~~kl~DFGla~ 576 (599)
.++|+|+.+.||++ +++..++++||-.|.
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 35799999999999 345679999999886
No 447
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=88.26 E-value=0.36 Score=31.53 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=8.2
Q ss_pred ehhhhhHHHHHHHHHHhhhhhh
Q 042902 377 IVLPLSTIFMMAVILLILRYRK 398 (599)
Q Consensus 377 ~~i~~~~~~~~~~~~~~~~~r~ 398 (599)
++.++++++++++.++++.+||
T Consensus 17 VVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 3333433333333333333333
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=85.89 E-value=1.7 Score=39.55 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=62.7
Q ss_pred CCCCcceeEEEEEEcCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHHHHhcCCCCCeEEccCCCCCee
Q 042902 481 IRHRNLIKIISSCSNDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALEYLHFGYSVPIIHCDLKPNNVL 560 (599)
Q Consensus 481 l~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~iiH~dlk~~Nil 560 (599)
-.||+.+.. ..-.+++...+.|+--+.+-=...++ ..+...+++++..|+....+++ .+ +|--+.|+|++
T Consensus 42 ~~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~ik----~~~~~eKlr~l~ni~~l~~~~~---~r--~tf~L~P~NL~ 111 (215)
T 4ann_A 42 QHSPYFIDA-ELTELRDSFQIHYDINDNHTPFDNIK----SFTKNEKLRYLLNIKNLEEVNR---TR--YTFVLAPDELF 111 (215)
T ss_dssp SCCTTBCCE-EEEECSSEEEEEECCCTTSEEGGGGG----GSCHHHHHHHHHHGGGGGGGGG---SS--EECCCSGGGEE
T ss_pred ccCCcccce-EEEEcccEEEEEEEcCcccCCHHHHH----hcCHHHHHHHHHHHHHHHHHhc---Cc--eEEEEecceEE
Confidence 358888866 45555666555555443221122232 2677889999999999887766 32 68889999999
Q ss_pred ecCCCcEEEccccCCccCC
Q 042902 561 LDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 561 l~~~~~~kl~DFGla~~~~ 579 (599)
++.++.+++.-.|+...+.
T Consensus 112 f~~~~~p~i~~RGik~~l~ 130 (215)
T 4ann_A 112 FTRDGLPIAKTRGLQNVVD 130 (215)
T ss_dssp ECTTSCEEESCCEETTTBS
T ss_pred EcCCCCEEEEEccCccCCC
Confidence 9999999999999865443
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=85.80 E-value=2.9 Score=38.19 Aligned_cols=87 Identities=10% Similarity=0.115 Sum_probs=62.3
Q ss_pred CCCcceeEEEEEEcCCeeeEEEEccCCCChhhhhhcCCCcCCHHHHHHHHHHHHHHHH-HHhcCCCCCeEEccCCCCCee
Q 042902 482 RHRNLIKIISSCSNDDFKALVLEYMPHGSLEKCLYSSNYILDIFQRLNIMIDVASALE-YLHFGYSVPIIHCDLKPNNVL 560 (599)
Q Consensus 482 ~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~-~lH~~~~~~iiH~dlk~~Nil 560 (599)
.||++ -...-.+++...+.++--+++-=...++. .+...+++++..|+.... +++ .-+|--+.|+||+
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~~----~~~~eKlrll~nl~~L~~~~~~-----~r~tf~l~P~NL~ 116 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIRK----TTLLSRIRAAIHLVSKVKHHSA-----RRLIFIVCPENLM 116 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHHT----SCHHHHHHHHHHHHHHHSSCCS-----SSEECCCCGGGEE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHHh----cCHHHHHHHHHHHHHHHHHhhh-----CceeEEEeCceEE
Confidence 58887 33344666777776766544333333332 677888999999888877 665 3368889999999
Q ss_pred ecCCCcEEEccccCCccCC
Q 042902 561 LDDNMVAHLSDFGMAKPLL 579 (599)
Q Consensus 561 l~~~~~~kl~DFGla~~~~ 579 (599)
+|.++.+++.-.|+-..+.
T Consensus 117 f~~~~~p~i~hRGi~~~lp 135 (219)
T 4ano_A 117 FNRALEPFFLHVGVKESLP 135 (219)
T ss_dssp ECTTCCEEESCCEETTTBS
T ss_pred EeCCCcEEEEEcCCcccCC
Confidence 9999999999999866553
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=85.56 E-value=0.1 Score=54.51 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=17.6
Q ss_pred cCceecccccceEEEEEecC-CcEEEE------EEeccc--ccccHHHHHHHHHHHhcCCCCcceeEEEEEE
Q 042902 432 ENNLIGRGGVASVYKARIQD-GIEVAV------KVFDLQ--YEGAFKSFDIECDMMKRIRHRNLIKIISSCS 494 (599)
Q Consensus 432 ~~~~ig~G~~g~Vy~~~~~~-~~~vav------K~~~~~--~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~ 494 (599)
..+.+| ||.||+|.+.. ..+||| |..+.. .......|..|..++...+|||+++.+++..
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 345566 99999999864 467898 665432 2233457888999999999999999988764
No 451
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=82.48 E-value=0.6 Score=30.40 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=12.8
Q ss_pred eeeehhhhhHHHHHHHHHHhhhhhhcC
Q 042902 374 LLGIVLPLSTIFMMAVILLILRYRKRG 400 (599)
Q Consensus 374 ~~~~~i~~~~~~~~~~~~~~~~~r~r~ 400 (599)
++++++++...+++++.++++.+||+.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhh
Confidence 445555544444444444455444443
No 452
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=81.82 E-value=0.67 Score=30.20 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHhhhhhh
Q 042902 381 LSTIFMMAVILLILRYRK 398 (599)
Q Consensus 381 ~~~~~~~~~~~~~~~~r~ 398 (599)
++.++++++..+++++||
T Consensus 20 v~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 20 LFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333333333333333333
No 453
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.00 E-value=5 Score=31.59 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=24.7
Q ss_pred ccccccCCccccCCCCCCEEeccCccCcccCCCcccccccCCCCCCcEEEccc
Q 042902 30 NSFYGFIPNTFGNLRNLKRLSLNYNYLTSSTPKLNFLSSLSNCKYLKYLSFSN 82 (599)
Q Consensus 30 n~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 82 (599)
..++.|...+|.++.+|+.+.|-.+ ++.+... +|.++.+|+.+.+..
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~-----aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDG-----MFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTT-----SSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHH-----HHhccCCccEEEEcC
Confidence 3445555555555555555555443 4444443 455555555555544
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.20 E-value=8.7 Score=30.18 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=28.2
Q ss_pred cccccCCccccCCCCCCEEEccCCcCCcccCccccCCCCCCEEEcccc
Q 042902 109 NISGSIPEEISNLTNLTTIYLGGNKLNGSIPIALDKLQKLQLLSLEDN 156 (599)
Q Consensus 109 ~i~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 156 (599)
.++.+...+|.++++|+.+.|-.+ ++.+...+|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455566666666766666653 44455566666666666666543
No 455
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=66.08 E-value=2.4 Score=26.70 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=9.2
Q ss_pred ceeeehhhhhHHHHHHHHH
Q 042902 373 LLLGIVLPLSTIFMMAVIL 391 (599)
Q Consensus 373 ~~~~~~i~~~~~~~~~~~~ 391 (599)
.+.+++++.++++.+++.+
T Consensus 12 aIAGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHH
Confidence 3456666555444433333
No 456
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=46.41 E-value=2.4e+02 Score=29.95 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH--HHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 524 IFQRLNIMIDVA--SALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 524 ~~~~~~i~~~i~--~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
+..+..+++..| .-+.|+= || +|=.++|||+|.+|.+-=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YIL-----Gi--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYIL-----GV--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhheee-----ec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 445556666554 4666765 33 5778999999999999999999874
No 457
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=28.93 E-value=93 Score=30.20 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=67.8
Q ss_pred eecccccceEEEEEecCCcEEEEEEecccccccHHHHHHHHHHHhcCCCCcceeEEEEE---------------------
Q 042902 435 LIGRGGVASVYKARIQDGIEVAVKVFDLQYEGAFKSFDIECDMMKRIRHRNLIKIISSC--------------------- 493 (599)
Q Consensus 435 ~ig~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~--------------------- 493 (599)
....| .+.||.+.. ++..|+||-.. ....+-|..++...-.+.-|+.- ++.+.
T Consensus 76 ~s~~G-stgvff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~R-iv~~~~~E~~e~~~~L~~~~~~~~~l 149 (342)
T 1cja_A 76 RSEKG-TEGLFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVR-VVSSNSEEGTNMLECLAAIDKSFRVI 149 (342)
T ss_dssp ECCST-TSCEEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEE-EEESSSHHHHHHHHHHHHHCSSSCHH
T ss_pred eccCC-CCCeEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCee-EEeeCcHHHHHHHHHHHHhhhhhHHH
Confidence 33444 455665555 58899999542 22334444455444445555432 22211
Q ss_pred --EcCCeeeEEEEccCCCChhhhhhcCC-CcCCHHHHHHHHHHHH--HHHHHHh-cCCCCCeEE-ccCCCCCeeecCCC-
Q 042902 494 --SNDDFKALVLEYMPHGSLEKCLYSSN-YILDIFQRLNIMIDVA--SALEYLH-FGYSVPIIH-CDLKPNNVLLDDNM- 565 (599)
Q Consensus 494 --~~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~~i~--~~l~~lH-~~~~~~iiH-~dlk~~Nill~~~~- 565 (599)
.......++|||++|..|.+.-+... ..+. .+.+.+++ -++.+.. -..+.+.+. ..=.+.|||+++++
T Consensus 150 ~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~----~~~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~ 225 (342)
T 1cja_A 150 TTLANQANILLMELVRGITLNKLTTTSAPEVLT----KSTMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGA 225 (342)
T ss_dssp HHHTTCSEEEEEECCCEEESTTCCSSSHHHHSC----HHHHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTT
T ss_pred HHhhcccceehhhhcCCCccccchhhhhhhhcC----HHHHHhhchhheehhhhcCCccCcccccCCCChhheEEeCCCC
Confidence 01123459999999766644211100 0111 12333332 2444444 233333322 12478999998655
Q ss_pred cEEEccccCCcc
Q 042902 566 VAHLSDFGMAKP 577 (599)
Q Consensus 566 ~~kl~DFGla~~ 577 (599)
.+.++|-+.|..
T Consensus 226 ~~~~IDhn~af~ 237 (342)
T 1cja_A 226 TVVPIDSKIIPL 237 (342)
T ss_dssp CEEECSCCCCCC
T ss_pred eEEEEcCCcccc
Confidence 488999999864
No 458
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=23.59 E-value=43 Score=36.24 Aligned_cols=44 Identities=25% Similarity=0.256 Sum_probs=32.8
Q ss_pred HHHHHHHHHH--HHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 526 QRLNIMIDVA--SALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 526 ~~~~i~~~i~--~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
.+..+++..| .-+.|+= || +|=+++|||++.+|.+--+|||.+-
T Consensus 530 ar~nF~~SlA~~Svv~YIL-----Gl--GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 530 VMDTYIKSCAGYCVITYLL-----GV--GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TC--CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHc-----cC--CCCCCcceEEeCCCCEEEEeehhhh
Confidence 3455655544 4566665 32 6888999999999999999999875
No 459
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=21.42 E-value=1.1e+02 Score=34.86 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=39.2
Q ss_pred ChhhhhhcCCCcCCHHH-HHHHHHHHH--HHHHHHhcCCCCCeEEccCCCCCeeecCCCcEEEccccCCc
Q 042902 510 SLEKCLYSSNYILDIFQ-RLNIMIDVA--SALEYLHFGYSVPIIHCDLKPNNVLLDDNMVAHLSDFGMAK 576 (599)
Q Consensus 510 ~L~~~l~~~~~~~~~~~-~~~i~~~i~--~~l~~lH~~~~~~iiH~dlk~~Nill~~~~~~kl~DFGla~ 576 (599)
.|.+++........|.. +..+++..| ..+.|+= || +|=.++|||+|.+|.+--+|||.+-
T Consensus 899 ~L~~~f~~~~~~~~~~~ar~nF~~S~A~ysvv~YiL-----gi--gDRH~~NILid~tG~v~HIDFG~~f 961 (1091)
T 3hhm_A 899 TLHQWLKDKNKGEIYDAAIDLFTRSCAGYCVATFIL-----GI--GDRHNSNIMVKDDGQLFHIDFGHFL 961 (1091)
T ss_dssp HHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHH-----TC--CCCCTTTEEEETTSCEEECCCCCCS
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhhhhheEEEE-----ee--cCCCCcceEEeCCCCEEEEeehhhh
Confidence 34455544332234443 345555544 4566665 33 5778999999999999999999874
Done!