Query 042904
Match_columns 320
No_of_seqs 271 out of 1185
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 18:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 6.5E-17 2.2E-21 126.1 6.7 66 101-167 5-70 (82)
2 1hlo_A Protein (transcription 99.6 2.5E-16 8.7E-21 122.0 6.4 69 99-167 9-77 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 4.5E-16 1.5E-20 121.3 7.4 66 102-167 2-67 (83)
4 4h10_B Circadian locomoter out 99.6 8.6E-16 3E-20 116.6 5.7 61 99-160 5-65 (71)
5 1an4_A Protein (upstream stimu 99.6 7.1E-16 2.4E-20 114.9 3.7 58 100-157 3-64 (65)
6 4ati_A MITF, microphthalmia-as 99.6 3E-15 1E-19 124.3 7.8 64 101-164 26-91 (118)
7 1nkp_A C-MYC, MYC proto-oncoge 99.6 3.2E-15 1.1E-19 118.1 7.4 66 101-166 5-71 (88)
8 1nlw_A MAD protein, MAX dimeri 99.5 1.2E-14 4.2E-19 112.8 8.4 65 103-167 2-67 (80)
9 1a0a_A BHLH, protein (phosphat 99.5 1.5E-15 5E-20 113.0 2.0 56 102-157 2-62 (63)
10 3u5v_A Protein MAX, transcript 99.5 9.8E-15 3.3E-19 112.3 3.3 60 101-160 4-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.4 4.4E-14 1.5E-18 107.9 2.7 54 101-154 8-63 (73)
12 1mdy_A Protein (MYOD BHLH doma 99.3 6.1E-13 2.1E-17 100.2 5.1 57 101-157 11-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 1.5E-12 5.2E-17 95.7 5.8 56 102-157 2-58 (60)
14 4f3l_A Mclock, circadian locom 98.9 5.7E-10 2E-14 107.0 5.7 55 100-155 10-64 (361)
15 2lfh_A DNA-binding protein inh 98.8 1.1E-09 3.6E-14 82.1 1.9 50 105-154 17-67 (68)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 4.8E-09 1.7E-13 101.7 4.9 53 102-154 13-67 (387)
17 4ath_A MITF, microphthalmia-as 98.7 4.5E-08 1.5E-12 76.0 7.0 52 114-165 4-57 (83)
18 4aya_A DNA-binding protein inh 98.4 3.7E-07 1.3E-11 72.9 6.4 49 109-157 32-81 (97)
19 1zpv_A ACT domain protein; str 96.2 0.027 9.3E-07 42.5 9.0 50 269-318 5-54 (91)
20 2ko1_A CTR148A, GTP pyrophosph 95.3 0.074 2.5E-06 39.4 8.0 49 269-317 5-53 (88)
21 2nyi_A Unknown protein; protei 93.3 0.24 8.2E-06 43.1 7.8 39 268-306 92-130 (195)
22 1u8s_A Glycine cleavage system 91.2 0.59 2E-05 40.1 7.6 38 269-306 93-130 (192)
23 3p96_A Phosphoserine phosphata 87.5 1.7 5.8E-05 41.4 8.4 49 268-316 11-59 (415)
24 3lou_A Formyltetrahydrofolate 78.0 6.5 0.00022 36.5 8.0 38 267-304 8-45 (292)
25 3o1l_A Formyltetrahydrofolate 75.8 9.8 0.00033 35.5 8.6 38 268-305 21-58 (302)
26 2pc6_A Probable acetolactate s 73.4 6.1 0.00021 33.8 6.0 47 270-316 5-53 (165)
27 2dtj_A Aspartokinase; protein- 62.6 24 0.00082 29.7 7.6 52 265-316 11-66 (178)
28 2fgc_A Acetolactate synthase, 60.3 17 0.0006 31.9 6.3 48 269-316 29-78 (193)
29 2re1_A Aspartokinase, alpha an 58.5 20 0.00068 29.8 6.2 53 264-316 20-74 (167)
30 2re1_A Aspartokinase, alpha an 57.1 36 0.0012 28.2 7.6 40 262-301 96-138 (167)
31 2f06_A Conserved hypothetical 54.3 43 0.0015 26.7 7.4 37 271-307 8-44 (144)
32 2f06_A Conserved hypothetical 52.0 46 0.0016 26.5 7.3 43 272-314 75-117 (144)
33 2l5g_A GPS2 protein, G protein 51.0 26 0.0009 22.8 4.3 32 135-166 3-34 (38)
34 2dt9_A Aspartokinase; protein- 50.2 28 0.00095 28.8 5.8 52 265-316 12-67 (167)
35 2wt7_A Proto-oncogene protein 43.5 65 0.0022 22.7 6.1 41 110-165 1-41 (63)
36 2er8_A Regulatory protein Leu3 41.6 18 0.0006 25.7 2.8 20 146-165 48-67 (72)
37 3ab4_A Aspartokinase; aspartat 40.6 79 0.0027 30.2 8.1 53 264-316 259-315 (421)
38 3he4_B Synzip5; heterodimeric 40.5 42 0.0014 22.1 4.1 26 141-166 4-29 (46)
39 1zme_C Proline utilization tra 39.0 25 0.00086 24.6 3.3 21 147-167 44-64 (70)
40 1pd7_B MAD1; PAH2, SIN3, eukar 39.0 35 0.0012 20.4 3.2 19 136-154 2-20 (26)
41 4go7_X Aspartokinase; transfer 35.2 81 0.0028 27.4 6.6 52 265-316 31-86 (200)
42 3muj_A Transcription factor CO 33.2 54 0.0018 27.3 4.7 37 116-152 95-133 (138)
43 2dt9_A Aspartokinase; protein- 31.8 1.2E+02 0.0042 24.8 6.9 40 262-301 88-130 (167)
44 2rrl_A FLIK, flagellar HOOK-le 31.7 1.1E+02 0.0037 26.2 6.6 46 259-304 101-152 (169)
45 1p3q_Q VPS9P, vacuolar protein 29.3 52 0.0018 23.0 3.4 23 108-130 3-25 (54)
46 1dh3_A Transcription factor CR 27.7 53 0.0018 22.8 3.3 21 147-167 22-42 (55)
47 3s1t_A Aspartokinase; ACT doma 27.5 1.5E+02 0.0052 24.8 6.9 51 266-316 13-67 (181)
48 2qmx_A Prephenate dehydratase; 26.3 1.3E+02 0.0045 27.5 6.6 48 272-319 203-251 (283)
49 2dtj_A Aspartokinase; protein- 26.2 1.2E+02 0.0041 25.2 6.0 40 262-301 88-130 (178)
50 3luy_A Probable chorismate mut 24.9 2.5E+02 0.0086 26.2 8.4 42 278-319 217-259 (329)
51 1gd2_E Transcription factor PA 24.8 61 0.0021 23.8 3.3 19 147-165 29-47 (70)
52 1xkm_B Distinctin chain B; por 24.5 82 0.0028 18.4 3.1 19 139-157 3-21 (26)
53 1pyi_A Protein (pyrimidine pat 22.6 64 0.0022 23.9 3.2 21 146-166 47-67 (96)
54 1hwt_C Protein (heme activator 22.6 29 0.00098 25.0 1.1 20 146-165 57-76 (81)
55 3s1t_A Aspartokinase; ACT doma 22.4 1.7E+02 0.0059 24.5 6.2 40 262-301 89-131 (181)
56 2jee_A YIIU; FTSZ, septum, coi 22.1 1E+02 0.0035 23.3 4.1 25 142-166 15-39 (81)
57 2jqq_A Conserved oligomeric go 21.8 42 0.0014 29.6 2.1 45 113-160 52-96 (204)
58 1rwu_A Hypothetical UPF0250 pr 20.8 2.2E+02 0.0076 22.3 6.1 50 268-318 35-87 (109)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.67 E-value=6.5e-17 Score=126.14 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=61.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042904 101 QQRMSHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKV 167 (320)
Q Consensus 101 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~ 167 (320)
.+|.+|+.+||+||++||++|..|++|||.. ..|+||++||.+||+||++||.+++.|+.+.+.+.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999985 48999999999999999999999999999887654
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.63 E-value=2.5e-16 Score=122.04 Aligned_cols=69 Identities=20% Similarity=0.408 Sum_probs=63.3
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042904 99 DGQQRMSHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKV 167 (320)
Q Consensus 99 ~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~ 167 (320)
...+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||++|+++++.|+.+++.+.
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999987557999999999999999999999999999988653
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.63 E-value=4.5e-16 Score=121.32 Aligned_cols=66 Identities=20% Similarity=0.396 Sum_probs=60.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042904 102 QRMSHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKV 167 (320)
Q Consensus 102 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~ 167 (320)
+|.+|+.+||+||..||+.|..|+++||.+...|++|++||..||+||++|+++++.|+.+++.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999986568999999999999999999999999998887654
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=8.6e-16 Score=116.63 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=55.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 042904 99 DGQQRMSHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLE 160 (320)
Q Consensus 99 ~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~ 160 (320)
+...|.+|+.+||+||++||+.|..|++|||.. ..|+||++||..||+||++||+++.-|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 456689999999999999999999999999974 4799999999999999999999987765
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=7.1e-16 Score=114.90 Aligned_cols=58 Identities=29% Similarity=0.459 Sum_probs=51.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhcCCCCCC----CCCChhhhHHHHHHHHHHHHHHHH
Q 042904 100 GQQRMSHITVERNRRKQMNENLSVLRSLMPCFYV----KRGDQASIIGGVVDYINELQQVLQ 157 (320)
Q Consensus 100 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~~----~k~dKasIL~~AI~YIk~Lq~~v~ 157 (320)
+.++.+|+.+||+||.+||+.|..|++|||.+.. .|++|++||..||+||++||++.+
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3458899999999999999999999999998743 378999999999999999998753
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.58 E-value=3e-15 Score=124.27 Aligned_cols=64 Identities=30% Similarity=0.431 Sum_probs=53.5
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 042904 101 QQRMSHITVERNRRKQMNENLSVLRSLMPCFY--VKRGDQASIIGGVVDYINELQQVLQSLEAKKQ 164 (320)
Q Consensus 101 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~--~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~ 164 (320)
..+.+|+.+||+||++||++|..|++|||.+. ..|++|++||.+||+||++||++++.|+.+..
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44789999999999999999999999999863 34789999999999999999999999987544
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=3.2e-15 Score=118.07 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=59.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042904 101 QQRMSHITVERNRRKQMNENLSVLRSLMPCF-YVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRK 166 (320)
Q Consensus 101 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 166 (320)
..|..|+..||+||..||+.|..|+++||.. ...|++|++||.+||+||++|+.+.+.|..+++.+
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999985 24699999999999999999999999988776654
No 8
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=1.2e-14 Score=112.78 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=59.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042904 103 RMSHITVERNRRKQMNENLSVLRSLMPCF-YVKRGDQASIIGGVVDYINELQQVLQSLEAKKQRKV 167 (320)
Q Consensus 103 r~~h~~~ER~RR~~in~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~~ 167 (320)
|..||..||+||..||+.|..|+++||.. ...|.+|++||..|++||++|+++.+.|..+++.+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999975 357889999999999999999999999999887654
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=1.5e-15 Score=112.96 Aligned_cols=56 Identities=30% Similarity=0.412 Sum_probs=49.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCCChhhhHHHHHHHHHHHHHHHH
Q 042904 102 QRMSHITVERNRRKQMNENLSVLRSLMPCFY-----VKRGDQASIIGGVVDYINELQQVLQ 157 (320)
Q Consensus 102 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~~-----~~k~dKasIL~~AI~YIk~Lq~~v~ 157 (320)
+|.+|+.+||+||++||+.|..|++|||.++ ..+.+|++||..||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999641 3578899999999999999998753
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.48 E-value=9.8e-15 Score=112.32 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=49.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCC-CCCCCC-ChhhhHHHHHHHHHHHHHHHHHHH
Q 042904 101 QQRMSHITVERNRRKQMNENLSVLRSLMPC-FYVKRG-DQASIIGGVVDYINELQQVLQSLE 160 (320)
Q Consensus 101 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~-~~~~k~-dKasIL~~AI~YIk~Lq~~v~~L~ 160 (320)
.+|..|+..||+||..||+.|..|+.+||. ....|. +|++||..||+||+.||+++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458899999999999999999999999994 334555 799999999999999999998764
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=4.4e-14 Score=107.86 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=48.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHHHHHH
Q 042904 101 QQRMSHITVERNRRKQMNENLSVLRSLMPCFY--VKRGDQASIIGGVVDYINELQQ 154 (320)
Q Consensus 101 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~--~~k~dKasIL~~AI~YIk~Lq~ 154 (320)
.+|.+|+.+||+||++||+.|..|++|||.+. ..|+||++||..||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999741 3699999999999999999874
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.35 E-value=6.1e-13 Score=100.20 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=52.2
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHH
Q 042904 101 QQRMSHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQ 157 (320)
Q Consensus 101 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~ 157 (320)
.+|..|+..||+|+..||+.|..||.+||.....|++|+.||..||+||..|++.++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 348899999999999999999999999998766799999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.32 E-value=1.5e-12 Score=95.73 Aligned_cols=56 Identities=29% Similarity=0.504 Sum_probs=51.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHH
Q 042904 102 QRMSHITVERNRRKQMNENLSVLRSLMPCF-YVKRGDQASIIGGVVDYINELQQVLQ 157 (320)
Q Consensus 102 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~ 157 (320)
+|..|+..||+|+..||+.|..||.+||.. ...|++|+.||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 477899999999999999999999999986 35789999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.94 E-value=5.7e-10 Score=107.01 Aligned_cols=55 Identities=22% Similarity=0.439 Sum_probs=42.7
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHH
Q 042904 100 GQQRMSHITVERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQV 155 (320)
Q Consensus 100 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~ 155 (320)
..+|.+|+.+||+||++||+.|.+|++|||.. ..|+||++||..||.||+.|+..
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~-~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence 44578999999999999999999999999943 67999999999999999999754
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.81 E-value=1.1e-09 Score=82.09 Aligned_cols=50 Identities=30% Similarity=0.317 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHH
Q 042904 105 SHITVERNRRKQMNENLSVLRSLMPCF-YVKRGDQASIIGGVVDYINELQQ 154 (320)
Q Consensus 105 ~h~~~ER~RR~~in~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~ 154 (320)
.-+..||+|+..||+.|..||.+||.. ...|++|+.||.-||+||..||.
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 334568999999999999999999986 35689999999999999999984
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.75 E-value=4.8e-09 Score=101.74 Aligned_cols=53 Identities=26% Similarity=0.445 Sum_probs=47.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHHHHHH
Q 042904 102 QRMSHITVERNRRKQMNENLSVLRSLMPCF--YVKRGDQASIIGGVVDYINELQQ 154 (320)
Q Consensus 102 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk~Lq~ 154 (320)
.|.+|+.+||+||++||+.|.+|++|||.+ ...|+||++||..||.|||.|+.
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 377999999999999999999999999942 15799999999999999999874
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.66 E-value=4.5e-08 Score=76.01 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCC--CCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042904 114 RKQMNENLSVLRSLMPCF--YVKRGDQASIIGGVVDYINELQQVLQSLEAKKQR 165 (320)
Q Consensus 114 R~~in~~~~~LrslvP~~--~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~ 165 (320)
|..||++|.+|..|||.+ ...|.+|++||..|++||++||+.++.+..+..+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999975 2457899999999999999999999888765543
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.42 E-value=3.7e-07 Score=72.88 Aligned_cols=49 Identities=31% Similarity=0.394 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-CCCCCChhhhHHHHHHHHHHHHHHHH
Q 042904 109 VERNRRKQMNENLSVLRSLMPCF-YVKRGDQASIIGGVVDYINELQQVLQ 157 (320)
Q Consensus 109 ~ER~RR~~in~~~~~LrslvP~~-~~~k~dKasIL~~AI~YIk~Lq~~v~ 157 (320)
.||.|-..||+.|..||.+||.. ...|++|+.+|.-||+||..|++.++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999999999976 35789999999999999999998763
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.25 E-value=0.027 Score=42.46 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=43.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEec
Q 042904 269 NLLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTVDETMHNSFTIKVT 318 (320)
Q Consensus 269 ~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~~~vl~tf~vKv~ 318 (320)
.+.|.|.|+.+||++.+|..+|-+.+..|.+.+....++...-.|.+.+.
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~ 54 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD 54 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC
Confidence 47899999999999999999999999999999998887776666666553
No 20
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.34 E-value=0.074 Score=39.40 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=41.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 042904 269 NLLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTVDETMHNSFTIKV 317 (320)
Q Consensus 269 ~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~~~vl~tf~vKv 317 (320)
.+.|+|.+..+||+|.+|..+|.+.++.|.++++...++.....|.+.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 3678899999999999999999999999999999877665445555554
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.32 E-value=0.24 Score=43.07 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=36.6
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 042904 268 PNLLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTVD 306 (320)
Q Consensus 268 ~~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~ 306 (320)
..+.|.|.|+.+||++..|..+|-++|+.|++++..+.+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 458999999999999999999999999999999999876
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=91.21 E-value=0.59 Score=40.08 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=35.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 042904 269 NLLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTVD 306 (320)
Q Consensus 269 ~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~ 306 (320)
.+.|.|.|+.+||++.+|..+|.++++.|..+...+.+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 47899999999999999999999999999999998775
No 23
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=87.51 E-value=1.7 Score=41.41 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=42.0
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEE
Q 042904 268 PNLLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTVDETMHNSFTIK 316 (320)
Q Consensus 268 ~~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~~~vl~tf~vK 316 (320)
..++|.+.|+.|||+...|...|-++|..|+.++-...++..+-.+.+.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~ 59 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVC 59 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEE
Confidence 4578999999999999999999999999999999998888754444443
No 24
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=77.99 E-value=6.5 Score=36.53 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 042904 267 GPNLLLKTVSPRIPGQAVKIISALEDLAFEILHVNIST 304 (320)
Q Consensus 267 g~~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist 304 (320)
...+.|.+.|+.++|++.+|...|-++|+.|++++-.+
T Consensus 8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 45 (292)
T 3lou_A 8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD 45 (292)
T ss_dssp CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence 34578999999999999999999999999999999874
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=75.79 E-value=9.8 Score=35.55 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=34.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 042904 268 PNLLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTV 305 (320)
Q Consensus 268 ~~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~ 305 (320)
..+.|.+.|+.++|++..|-..|-++|..|+.++-+.-
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 45789999999999999999999999999999998854
No 26
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=73.37 E-value=6.1 Score=33.83 Aligned_cols=47 Identities=4% Similarity=0.179 Sum_probs=38.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEE
Q 042904 270 LLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTVD--ETMHNSFTIK 316 (320)
Q Consensus 270 v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~--~~vl~tf~vK 316 (320)
..|.|....+||+|.+|...|...|+.|.+.++.... +....+|.+.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 5788889999999999999999999999999997543 5555566654
No 27
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=62.58 E-value=24 Score=29.73 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=35.4
Q ss_pred EeCCeEEEEEE-cCCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 042904 265 FSGPNLLLKTV-SPRIPGQAVKIISALEDLAFEILHVNISTV---DETMHNSFTIK 316 (320)
Q Consensus 265 ~~g~~v~IkI~-c~rr~glL~~Im~aLE~L~LdV~~anist~---~~~vl~tf~vK 316 (320)
...+.+.|.|. -+.++|.+.+|++.|.+.++.|.....++. ++..-.+|++.
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 34566777774 467899999999999999966655544433 33333456654
No 28
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=60.32 E-value=17 Score=31.86 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=39.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEE
Q 042904 269 NLLLKTVSPRIPGQAVKIISALEDLAFEILHVNISTV-D-ETMHNSFTIK 316 (320)
Q Consensus 269 ~v~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~-~-~~vl~tf~vK 316 (320)
...|.|.-+.+||.|.+|...|...|+.|.+.++... + +....+|++.
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 3678888899999999999999999999999998743 3 5555566664
No 29
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=58.52 E-value=20 Score=29.84 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=36.4
Q ss_pred EEeCCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEE
Q 042904 264 KFSGPNLLLKTVS-PRIPGQAVKIISALEDLAFEILHVNISTV-DETMHNSFTIK 316 (320)
Q Consensus 264 ~~~g~~v~IkI~c-~rr~glL~~Im~aLE~L~LdV~~anist~-~~~vl~tf~vK 316 (320)
....+...|.|.. +.++|.+.+|+.+|.+.++.|.....+.. ++...-+|++.
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 3446667888874 77899999999999999988877654422 34333455553
No 30
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=57.11 E-value=36 Score=28.20 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=33.3
Q ss_pred EEEEeCCeEEEEEEcCC---CCChHHHHHHHHHhCCceEEEEE
Q 042904 262 EVKFSGPNLLLKTVSPR---IPGQAVKIISALEDLAFEILHVN 301 (320)
Q Consensus 262 eV~~~g~~v~IkI~c~r---r~glL~~Im~aLE~L~LdV~~an 301 (320)
.|....+-..|.|.... .||.+.+++++|.+.++.|...+
T Consensus 96 ~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 96 SIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred eEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 34555677888998876 79999999999999999998854
No 31
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=54.35 E-value=43 Score=26.70 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 042904 271 LLKTVSPRIPGQAVKIISALEDLAFEILHVNISTVDE 307 (320)
Q Consensus 271 ~IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~~ 307 (320)
.|.|.-+.+||.+.+|+.+|.+.++.|....+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 5566678999999999999999999998877654333
No 32
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=52.00 E-value=46 Score=26.51 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=30.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 042904 272 LKTVSPRIPGQAVKIISALEDLAFEILHVNISTVDETMHNSFT 314 (320)
Q Consensus 272 IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~~~vl~tf~ 314 (320)
|-+.-+.+||.+.+|+++|.+.++.|.+.-++.-++.....|.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~ 117 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR 117 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence 4445678999999999999999999976554423444433443
No 33
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.01 E-value=26 Score=22.78 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=27.7
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042904 135 RGDQASIIGGVVDYINELQQVLQSLEAKKQRK 166 (320)
Q Consensus 135 k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~~ 166 (320)
.|.....|.++-+-|..|+.+++.|+.++.++
T Consensus 3 e~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 3 EMEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567789999999999999999999998764
No 34
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=50.18 E-value=28 Score=28.84 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=35.3
Q ss_pred EeCCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 042904 265 FSGPNLLLKTVS-PRIPGQAVKIISALEDLAFEILHVNISTV---DETMHNSFTIK 316 (320)
Q Consensus 265 ~~g~~v~IkI~c-~rr~glL~~Im~aLE~L~LdV~~anist~---~~~vl~tf~vK 316 (320)
...+.+.|.|.. +.++|.+.+|+.+|.+.++.|...+.+.. .+..--+|++.
T Consensus 12 ~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 12 LDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 345667777765 56799999999999999888776654422 23334456553
No 35
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.55 E-value=65 Score=22.75 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042904 110 ERNRRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLEAKKQR 165 (320)
Q Consensus 110 ER~RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~~~~~~ 165 (320)
||++|....++..+-++= ..-.+|+..|+.+++.|+.+...
T Consensus 1 Ekr~rrrerNR~AA~rcR---------------~rKk~~~~~Le~~v~~L~~~n~~ 41 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR---------------NRRRELTDTLQAETDQLEDEKSA 41 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777776652 12236666666666666665544
No 36
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=41.58 E-value=18 Score=25.70 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042904 146 VDYINELQQVLQSLEAKKQR 165 (320)
Q Consensus 146 I~YIk~Lq~~v~~L~~~~~~ 165 (320)
-.||..|+++++.|+..+..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999998875
No 37
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=40.61 E-value=79 Score=30.24 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=38.9
Q ss_pred EEeCCeEEEEEE-cCCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 042904 264 KFSGPNLLLKTV-SPRIPGQAVKIISALEDLAFEILHVNISTV---DETMHNSFTIK 316 (320)
Q Consensus 264 ~~~g~~v~IkI~-c~rr~glL~~Im~aLE~L~LdV~~anist~---~~~vl~tf~vK 316 (320)
....+.+.|.|. .+.++|.+.+|+.+|++.++.|.....++. ++....+|++.
T Consensus 259 ~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 259 ATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 445778888888 577899999999999999998887754333 24334455554
No 38
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.45 E-value=42 Score=22.07 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042904 141 IIGGVVDYINELQQVLQSLEAKKQRK 166 (320)
Q Consensus 141 IL~~AI~YIk~Lq~~v~~L~~~~~~~ 166 (320)
.+.+--+||++|+++..+|+.-++.+
T Consensus 4 tvkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 35667799999999999998766654
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=38.99 E-value=25 Score=24.57 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042904 147 DYINELQQVLQSLEAKKQRKV 167 (320)
Q Consensus 147 ~YIk~Lq~~v~~L~~~~~~~~ 167 (320)
.||..|+++++.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998887653
No 40
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=38.97 E-value=35 Score=20.42 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=15.6
Q ss_pred CChhhhHHHHHHHHHHHHH
Q 042904 136 GDQASIIGGVVDYINELQQ 154 (320)
Q Consensus 136 ~dKasIL~~AI~YIk~Lq~ 154 (320)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4577899999999987665
No 41
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=35.17 E-value=81 Score=27.42 Aligned_cols=52 Identities=33% Similarity=0.434 Sum_probs=37.4
Q ss_pred EeCCeEEEEEE-cCCCCChHHHHHHHHHhCCceEEEE--EEEee-CCeEEEEEEEE
Q 042904 265 FSGPNLLLKTV-SPRIPGQAVKIISALEDLAFEILHV--NISTV-DETMHNSFTIK 316 (320)
Q Consensus 265 ~~g~~v~IkI~-c~rr~glL~~Im~aLE~L~LdV~~a--nist~-~~~vl~tf~vK 316 (320)
...+.+.|.|. .+.+||.+.+|+.+|.+.++.|-.. +++.. ++....+|++.
T Consensus 31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 34677778775 4678999999999999998776655 34443 34666778775
No 42
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=33.24 E-value=54 Score=27.29 Aligned_cols=37 Identities=14% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCC--CCCCChhhhHHHHHHHHHHH
Q 042904 116 QMNENLSVLRSLMPCFY--VKRGDQASIIGGVVDYINEL 152 (320)
Q Consensus 116 ~in~~~~~LrslvP~~~--~~k~dKasIL~~AI~YIk~L 152 (320)
-|.-.|..|+.++|..+ ..+.-|--||+.|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 47889999999999862 34667999999999998766
No 43
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=31.81 E-value=1.2e+02 Score=24.76 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=33.6
Q ss_pred EEEEeCCeEEEEEEcCC---CCChHHHHHHHHHhCCceEEEEE
Q 042904 262 EVKFSGPNLLLKTVSPR---IPGQAVKIISALEDLAFEILHVN 301 (320)
Q Consensus 262 eV~~~g~~v~IkI~c~r---r~glL~~Im~aLE~L~LdV~~an 301 (320)
.|.+..+-+.|.|.... .||.+.+++++|.+.++.|.-.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 56666788899998876 79999999999999999996554
No 44
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=31.68 E-value=1.1e+02 Score=26.25 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=38.3
Q ss_pred ceEEEEEeCCeEEEEEEcCCC------CChHHHHHHHHHhCCceEEEEEEEe
Q 042904 259 ADVEVKFSGPNLLLKTVSPRI------PGQAVKIISALEDLAFEILHVNIST 304 (320)
Q Consensus 259 ~~VeV~~~g~~v~IkI~c~rr------~glL~~Im~aLE~L~LdV~~anist 304 (320)
.+|.|++.++.+.|++..... ...+.++-++|++-||.+-.++|+.
T Consensus 101 l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~ 152 (169)
T 2rrl_A 101 VHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISS 152 (169)
T ss_dssp EEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEES
T ss_pred EEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEec
Confidence 356666779999999999885 3467888899999999999999985
No 45
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=29.27 E-value=52 Score=23.04 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 042904 108 TVERNRRKQMNENLSVLRSLMPC 130 (320)
Q Consensus 108 ~~ER~RR~~in~~~~~LrslvP~ 130 (320)
.++|-+|...++-+..|+.+.|.
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 46788999999999999999998
No 46
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.68 E-value=53 Score=22.77 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042904 147 DYINELQQVLQSLEAKKQRKV 167 (320)
Q Consensus 147 ~YIk~Lq~~v~~L~~~~~~~~ 167 (320)
.||..|+.+|..|+.+...+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888766543
No 47
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=27.54 E-value=1.5e+02 Score=24.84 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=33.5
Q ss_pred eCCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEE
Q 042904 266 SGPNLLLKTVS-PRIPGQAVKIISALEDLAFEILHVNISTV---DETMHNSFTIK 316 (320)
Q Consensus 266 ~g~~v~IkI~c-~rr~glL~~Im~aLE~L~LdV~~anist~---~~~vl~tf~vK 316 (320)
..+.+.|.|.. +.++|.+.+|+.+|.+.++.|....-+.. ++..--+|++.
T Consensus 13 ~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 13 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp ECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred cCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 35556666543 45799999999999999988876543222 34444555554
No 48
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=26.27 E-value=1.3e+02 Score=27.54 Aligned_cols=48 Identities=6% Similarity=0.144 Sum_probs=37.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEecC
Q 042904 272 LKTVSPRIPGQAVKIISALEDLAFEILHVNISTVDE-TMHNSFTIKVTK 319 (320)
Q Consensus 272 IkI~c~rr~glL~~Im~aLE~L~LdV~~anist~~~-~vl~tf~vKv~~ 319 (320)
|-+.-+.+||.|.+++..|...++.......-...+ .--|.|.|.+++
T Consensus 203 l~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg 251 (283)
T 2qmx_A 203 IVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIG 251 (283)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEES
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEec
Confidence 333346889999999999999999999999987653 235778877753
No 49
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=26.21 E-value=1.2e+02 Score=25.22 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=33.0
Q ss_pred EEEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEE
Q 042904 262 EVKFSGPNLLLKTVSP---RIPGQAVKIISALEDLAFEILHVN 301 (320)
Q Consensus 262 eV~~~g~~v~IkI~c~---rr~glL~~Im~aLE~L~LdV~~an 301 (320)
.|.+..+-+.|.|... ..||.+.+++++|.+.++.|.-.+
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 4566678889998887 467999999999999999997754
No 50
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=24.85 E-value=2.5e+02 Score=26.24 Aligned_cols=42 Identities=12% Similarity=0.241 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEEecC
Q 042904 278 RIPGQAVKIISALEDLAFEILHVNISTVDET-MHNSFTIKVTK 319 (320)
Q Consensus 278 rr~glL~~Im~aLE~L~LdV~~anist~~~~-vl~tf~vKv~~ 319 (320)
.+||.|.++|..|...++.......-...+. --|.|.|.+++
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg 259 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDA 259 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeC
Confidence 5799999999999999999999999877654 35788888754
No 51
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.76 E-value=61 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 042904 147 DYINELQQVLQSLEAKKQR 165 (320)
Q Consensus 147 ~YIk~Lq~~v~~L~~~~~~ 165 (320)
.||++|+.+|..|+.....
T Consensus 29 ~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777765443
No 52
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=24.52 E-value=82 Score=18.37 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 042904 139 ASIIGGVVDYINELQQVLQ 157 (320)
Q Consensus 139 asIL~~AI~YIk~Lq~~v~ 157 (320)
++-|-+|-.|+.+|.++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4557788889888887764
No 53
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.65 E-value=64 Score=23.87 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042904 146 VDYINELQQVLQSLEAKKQRK 166 (320)
Q Consensus 146 I~YIk~Lq~~v~~L~~~~~~~ 166 (320)
-.||..|+++++.|+..+..+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 359999999999999988763
No 54
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.63 E-value=29 Score=25.03 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042904 146 VDYINELQQVLQSLEAKKQR 165 (320)
Q Consensus 146 I~YIk~Lq~~v~~L~~~~~~ 165 (320)
-.||..|+.+++.||..+..
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~ 76 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999876654
No 55
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=22.38 E-value=1.7e+02 Score=24.52 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=33.2
Q ss_pred EEEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEE
Q 042904 262 EVKFSGPNLLLKTVSP---RIPGQAVKIISALEDLAFEILHVN 301 (320)
Q Consensus 262 eV~~~g~~v~IkI~c~---rr~glL~~Im~aLE~L~LdV~~an 301 (320)
+|.+..+-..|.|... ..||++.+++++|.+.++.|.-.+
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 4556677788888776 568999999999999999988777
No 56
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.11 E-value=1e+02 Score=23.34 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 042904 142 IGGVVDYINELQQVLQSLEAKKQRK 166 (320)
Q Consensus 142 L~~AI~YIk~Lq~~v~~L~~~~~~~ 166 (320)
+..||+-|.-||.++++|+.+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998876653
No 57
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.76 E-value=42 Score=29.59 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHH
Q 042904 113 RRKQMNENLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQSLE 160 (320)
Q Consensus 113 RR~~in~~~~~LrslvP~~~~~k~dKasIL~~AI~YIk~Lq~~v~~L~ 160 (320)
=|..++.-...||.|+-.. . ..-..++.+||+|++.|.+-...|+
T Consensus 52 v~~Dl~~F~~QL~qL~~~~-i--~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKDD-I--SNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHS-C--STTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhhh-h--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887652 1 2356789999999999988776655
No 58
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=20.82 E-value=2.2e+02 Score=22.33 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=39.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhC---CceEEEEEEEeeCCeEEEEEEEEec
Q 042904 268 PNLLLKTVSPRIPGQAVKIISALEDL---AFEILHVNISTVDETMHNSFTIKVT 318 (320)
Q Consensus 268 ~~v~IkI~c~rr~glL~~Im~aLE~L---~LdV~~anist~~~~vl~tf~vKv~ 318 (320)
..+.+||.....+++...|.++++.+ ..++ ..+-|.-+..+-.++++.+.
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~ 87 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT 87 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC
Confidence 46888988899999999999999987 6776 66777778886666665543
Done!