BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042906
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 150/325 (46%), Gaps = 32/325 (9%)
Query: 36 TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
T LHMA R + +V + +L+ + + + K D+TPLH AARIG+ +V +
Sbjct: 49 TPLHMAARAGHTEVAKYLLQNK---------AKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Query: 96 VKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA 155
++ N A P + G+TPLH A H + L+EK++ + K
Sbjct: 100 LE-----NNANP--------NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNK 215
+ TPL +A A ++++ + + LT LH V N DI VK+L
Sbjct: 147 F-TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPLHVAVHHNNLDI-VKLLLPRG 202
Query: 216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVL 275
W+ PLH AA V++A+ LL+ A G TPLHLAA+ G +++
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMV 261
Query: 276 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL 335
LL++K + + + S + LH+ A+ G+ + ++K M ++ R G TPLH+
Sbjct: 262 ALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHV 317
Query: 336 AA-MGLHSDVVFTLSRHKSVNIRAK 359
A+ G V F L VN + K
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTK 342
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 175/381 (45%), Gaps = 43/381 (11%)
Query: 10 RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL 69
R G N +K L + ++ G+T LH+A R + + + +L ++ A +
Sbjct: 89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA------CM 142
Query: 70 RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
+K TPLH+AA+ G + +++ N AG G TPLH A
Sbjct: 143 TKKGF---TPLHVAAKYGKVRVAELLLERDAHPNAAGK-------------NGLTPLHVA 186
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLP 189
V + + ++++L+ + P S Y TPL IA + A ++ S N +
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGY-TPLHIAAKQNQVEVARSLLQYG-GSANAESV- 243
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
+T LH ++ + MV +L + + + + PLH A G+V +A L++
Sbjct: 244 QGVTPLHLAA-QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302
Query: 250 QL-AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
+ A R G TPLH+A+ G +K++K L+ D + + S LH AA+ G+ +I
Sbjct: 303 MVDATTR--MGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDI 359
Query: 309 VSFILK---SPEMENLINLVDRNGNTPLHLAA-MGLHS--DVVFTLSRHKS-VNIRAKNR 361
V+ +LK SP N V +G TPL +A +G S DV+ ++ S V + K+R
Sbjct: 360 VTLLLKNGASP------NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 413
Query: 362 SARNNIALEIAEITRADGKEI 382
+ EI +++ +G+E+
Sbjct: 414 MSFPETVDEILDVSEDEGEEL 434
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 261 TPLHLAAENGKLKVLKLLINK--YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 318
TPLH+A+ G L ++K L+ + P+ ++ + LH+AA+ G+ + ++L++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN--- 69
Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVV------------FTLSRHKSVNIRAKNRSARNN 366
+ +N ++ TPLH AA H+++V T + H ++I A+
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 129
Query: 367 IALEIAEITRA 377
+AL E ++A
Sbjct: 130 LALLEKEASQA 140
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 5/123 (4%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH AA +G++++ + LLE + K D NG TPLHLAA NG L+V+KLL+ D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
+ +D + R+ LH+AA++G+ +V +L++ +N D+NG TPLHLAA H +VV
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVV 117
Query: 346 FTL 348
L
Sbjct: 118 KLL 120
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
NG TPLHLAA NG L+V+KLL+ D + +D + R+ LH+AA++G+ +V +L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSAR 364
+N D+NG TPLHLAA H +VV L ++ AK+++ R
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGR 102
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
T LH R + +VK+L ++ D + R PLH AA +G++++ + LLE +
Sbjct: 4 TPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
K D NG TPLHLAA NG L+V+KLL+ D + +D + R+ LH+AA++G+ +V +
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 313 LKS 315
L++
Sbjct: 121 LEA 123
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 23/130 (17%)
Query: 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
G T LH+A R + +V++ +L + K+ TPLH+AAR G+ +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV---------NAKDKNGRTPLHLAARNGHLEVVK 52
Query: 94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
+++ VN +D G TPLH A N H V+++L+E + ++ +
Sbjct: 53 LLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-D 98
Query: 154 KAYQTPLSIA 163
K +TPL +A
Sbjct: 99 KNGRTPLHLA 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 10 RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL 69
RNG +K L + G T LH+A R + +V++ +L +
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV--------- 61
Query: 70 RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
K+ TPLH+AAR G+ +V +++ VN +D G TPLH A
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLA 108
Query: 130 VTNQHKRVIRILVEKDS 146
N H V+++L+E +
Sbjct: 109 ARNGHLEVVKLLLEAGA 125
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
VK L N ++ D R PLHYAA G+ ++ + L+ + + K D +G TPLH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
+ G +++KLLI+K D + +D+ R+ LH AAK G+ IV ++ +N D
Sbjct: 79 KEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLA 336
+G TPL LA
Sbjct: 135 DGRTPLDLA 143
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D T LH+ ++ + +VK+L + ++ D R PLHYAA G+ ++ + L+ +
Sbjct: 36 DGRTPLHYAA-KEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
+ K D +G TPLH AA+ G +++KLLI+K D + D+ R+ L +A +HGN IV
Sbjct: 95 DVNAK-DSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEIV 152
Query: 310 SFILK 314
+ K
Sbjct: 153 KLLEK 157
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 23/163 (14%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ + L+E NG+++++K L + S G T LH A + ++++++ ++ + +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
K+ TPLH AA+ G++ IV ++ VN +D
Sbjct: 64 ---------NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-------------AKDS 101
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+G TPLH A HK ++++L+ K + ++ + +TPL +A
Sbjct: 102 DGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG-RTPLDLA 143
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 51/196 (26%)
Query: 83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILV 142
AA GN+ V ++++ VN + D +G TPLH A HK ++++L+
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS-------------DSDGRTPLHYAAKEGHKEIVKLLI 57
Query: 143 EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ 202
K D DS D T LH+ ++
Sbjct: 58 SK------------------GADVNAKDS------------------DGRTPLHYAA-KE 80
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
+ +VK+L + ++ D R PLHYAA G+ ++ + L+ + + D +G TP
Sbjct: 81 GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NTSDSDGRTP 139
Query: 263 LHLAAENGKLKVLKLL 278
L LA E+G +++KLL
Sbjct: 140 LDLAREHGNEEIVKLL 155
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH AA+ G++ IV ++ VN +D +G TPLH A HK +
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVN-------------AKDSDGRTPLHYAAKEGHKEI 85
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHF 197
+++L+ K + ++ + +TPL A + +I K + +NT+ D T L
Sbjct: 86 VKLLISKGADVNAKDSDG-RTPLHYAAKEGHKEIVKLLISKGAD-VNTSD-SDGRTPLDL 142
Query: 198 VVMRQNYDIMVKIL 211
N +I VK+L
Sbjct: 143 AREHGNEEI-VKLL 155
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
VK L N ++ D R PLH+AA +G+ ++ + L+ + + K D +G TPLH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
ENG +V+KLLI+K D + +D+ R+ LH AA++G+ +V ++ +N D
Sbjct: 79 ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSR 350
+G TPL LA + +VV L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEK 157
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D T LH + ++ VK+L + ++ D R PLH+AA +G+ ++ + L+ +
Sbjct: 36 DGRTPLHHAAENGHKEV-VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
+ K D +G TPLH AAENG +V+KLLI+K D + D+ R+ L +A +HGN +V
Sbjct: 95 DVNAK-DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVV 152
Query: 310 SFILK 314
+ K
Sbjct: 153 KLLEK 157
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ + L+E NG+++++K L + S G T LH A +++V++ ++ + +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
K+ TPLH AA G++ +V ++ VN +D
Sbjct: 64 ---------NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-------------AKDS 101
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+G TPLH+A N HK V+++L+ K + + +TPL +A
Sbjct: 102 DGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLA 143
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 51/196 (26%)
Query: 83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILV 142
AA GN+ V ++++ VN + D +G TPLH+A N HK V+++L+
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS-------------DSDGRTPLHHAAENGHKEVVKLLI 57
Query: 143 EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQ 202
K D DS D T LH
Sbjct: 58 SK------------------GADVNAKDS------------------DGRTPLHHAAENG 81
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
+ ++ VK+L + ++ D R PLH+AA +G+ ++ + L+ + + D +G TP
Sbjct: 82 HKEV-VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTP 139
Query: 263 LHLAAENGKLKVLKLL 278
L LA E+G +V+KLL
Sbjct: 140 LDLAREHGNEEVVKLL 155
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH AA G++ +V ++ VN +D +G TPLH+A N HK V
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVN-------------AKDSDGRTPLHHAAENGHKEV 85
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT----RLPDELT 193
+++L+ K + + +TPL A + + +I K + +NT+ R P +L
Sbjct: 86 VKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLA 143
Query: 194 LLH 196
H
Sbjct: 144 REH 146
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + K D +G
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
+N D+ G TP LA H D+ L +
Sbjct: 127 -VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
+D +G TPLHLAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAE 373
+ +N D++G TPLHLAA H ++V L + ++ A+++ + L I E
Sbjct: 90 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAIRE 144
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A R + +++ +L+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
K+ TPLH+AAR G+ IV ++K VN +D
Sbjct: 62 ---------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-------------AKDK 99
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI 164
+G TPLH A H ++ +L+ K + +K +TP +AI
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAI 142
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 363
+N D++G TPLHLAA H ++V L + ++ AK++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDG 68
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 4/91 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
NG TPLHLAA NG L+V+KLL+ D + +D + R+ LH+AA++G+ +V +L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
+N D+NG TPLHLAA H +VV L
Sbjct: 60 D---VNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH AA +G++++ + LLE + K D NG TPLHLAA NG L+V+KLL+ D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
+ +D + R+ LH+AA++G+ +V +L++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
T LH R + +VK+L ++ D + R PLH AA +G++++ + LLE +
Sbjct: 4 TPLHLAA-RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLI 279
K D NG TPLHLAA NG L+V+KLL+
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 22/113 (19%)
Query: 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
G T LH+A R + +V++ +L + K+ TPLH+AAR G+ +V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV---------NAKDKNGRTPLHLAARNGHLEVVK 52
Query: 94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
+++ VN +D G TPLH A N H V+++L+E +
Sbjct: 53 LLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH+AAR G+ +V +++ VN +D G TPLH A N H V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEV 50
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIA 163
+++L+E + ++ +K +TPL +A
Sbjct: 51 VKLLLEAGADVNAK-DKNGRTPLHLA 75
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 37/127 (29%)
Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181
G TPLH A N H V+++L+E + ++ +K +TPL +A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLA------------------ 42
Query: 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241
R + +VK+L ++ D + R PLH AA +G++++
Sbjct: 43 ------------------ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 242 QRLLEES 248
+ LLE
Sbjct: 85 KLLLEAG 91
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 10 RNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL 69
RNG +K L + G T LH+A R + +V++ +L +
Sbjct: 11 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV--------- 61
Query: 70 RQKNLMDETPLHIAARIGNRAIV 92
K+ TPLH+AAR G+ +V
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVV 84
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
D R PLHYAA +G+ ++ + LL + K D +G TPLH AAENG +++KLL++K
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 282 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
D +D+ R+ LH AA++G+ IV +L N D +G TPL LA
Sbjct: 93 GADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD---PNTSDSDGRTPLDLA 143
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D T LH+ + +I VK+L + + D R PLHYAA +G+ ++ + LL +
Sbjct: 36 DGRTPLHYAAENGHKEI-VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
K D +G TPLH AAENG +++KLL++K D D+ R+ L +A +HGN IV
Sbjct: 95 DPNAK-DSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDLAREHGNEEIV 152
Query: 310 SFILK 314
+ K
Sbjct: 153 KLLEK 157
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
AA +GN + LLE D +G TPLH AAENG +++KLL++K D +D+
Sbjct: 11 AAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKDS 68
Query: 292 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
R+ LH AA++G+ IV +L N D +G TPLH AA H ++V L
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGAD---PNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 23/163 (14%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ + L+E NG+++++K L + S G T LH A ++++++ +L +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG--- 60
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ K+ TPLH AA G++ IV ++ N +D
Sbjct: 61 ------ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-------------AKDS 101
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+G TPLH A N HK ++++L+ K + P++ + +TPL +A
Sbjct: 102 DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG-RTPLDLA 143
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH AA G++ IV ++ N +D +G TPLH A N HK +
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPN-------------AKDSDGRTPLHYAAENGHKEI 85
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAID 165
+++L+ K + P++ + +TPL A +
Sbjct: 86 VKLLLSKGADPNAKDSDG-RTPLHYAAE 112
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 5/150 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + K D +G
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 126
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350
+N D+ G TP LA + D+ L +
Sbjct: 127 -VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
+D +G TPLHLAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+ +N D++G TPLHLAA H ++V L + ++ A+++ + L I
Sbjct: 90 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTPFDLAI 142
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A R + +++ +L+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG--- 58
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ + K+ TPLH+AAR G+ IV ++K VN +D
Sbjct: 59 ------ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-------------AKDK 99
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+G TPLH A H ++ +L+ K + +K +TP +AID
Sbjct: 100 DGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAID 143
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 363
+N D++G TPLHLAA H ++V L + ++ AK++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDG 68
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
+R+PLH AA +G+V + L++ + + + TPL AAEN L+ +K LI K
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLI-KAGA 68
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
++ +D + LH+AAK G++ +V ++L + +M+ +N D G TP+ A H D+
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDL 126
Query: 345 V-FTLSRHKSVNIRAKNRSARNNIALEIAEIT 375
V LS+ +NIR NI L A +
Sbjct: 127 VKLLLSKGSDINIRDN----EENICLHWAAFS 154
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 8/204 (3%)
Query: 157 QTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKE 216
++PL A +A D C ++ ++ +++T D+ T L N+ VK L
Sbjct: 12 RSPLHAAAEAGHVD-ICHMLVQAGANIDTCS-EDQRTPL-MEAAENNHLEAVKYLIKAGA 68
Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLK 276
L+D D LH AA G+ ++ Q LL + +D G TP+ A E + ++K
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
LL++K D I IRDN + LH AA G +I +L + + +N+ +G++PLH+A
Sbjct: 129 LLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI---HGDSPLHIA 184
Query: 337 AMGLHSD-VVFTLSRHKSVNIRAK 359
A D VV LSR V ++ K
Sbjct: 185 ARENRYDCVVLFLSRDSDVTLKNK 208
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 84/215 (39%), Gaps = 24/215 (11%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGP---LPVLES-----------------LFRM 117
+PLH AA G+ I +V+ ++ P++E+ L
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
+D EG+T LH A H V++ L+ + + + TP+ A + + D ++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
K + R +E LH+ DI +IL K + ++ H +PLH AA
Sbjct: 133 KGSDI--NIRDNEENICLHWAAFSGCVDI-AEILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
L + K GETPL A+ N ++
Sbjct: 190 YDCVVLFLSRDSDVTLKNK-EGETPLQCASLNSQV 223
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
N +PLH AAE G + + +L+ + I+ R+ L AA++ + V +++K+
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360
L++ D G+T LHLAA H +VV L + +++ ++
Sbjct: 69 ---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 208 VKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267
VK L N ++ D + PLH AA +G+ ++ + LL + +D +G+TPLHLAA
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAA 78
Query: 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
ENG +V+KLL+++ D +D+ ++ LH+AA++G+ +V +L N D
Sbjct: 79 ENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD---PNTSDS 134
Query: 328 NGNTPLHLAAMGLHSDVVFTLSR 350
+G TPL LA + +VV L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEK 157
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 23/163 (14%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ + L+E NG+++++K L + S G T LH+A +++V++ +L Q
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ---- 59
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ K+ +TPLH+AA G++ +V ++ N +D
Sbjct: 60 -----GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-------------AKDS 101
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+G TPLH A N HK V+++L+ + + P++ + +TPL +A
Sbjct: 102 DGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG-RTPLDLA 143
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D T LH + ++ VK+L + + D + PLH AA +G+ ++ + LL +
Sbjct: 36 DGKTPLHLAAENGHKEV-VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
+D +G+TPLHLAAENG +V+KLL+++ D D+ R+ L +A +HGN +V
Sbjct: 95 D-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP-NTSDSDGRTPLDLAREHGNEEVV 152
Query: 310 SFILK 314
+ K
Sbjct: 153 KLLEK 157
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH+AA G++ +V ++ N +D +G TPLH A N HK V
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPN-------------AKDSDGKTPLHLAAENGHKEV 85
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAID 165
+++L+ + + P++ + +TPL +A +
Sbjct: 86 VKLLLSQGADPNAKDSDG-KTPLHLAAE 112
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 10/126 (7%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D NG TPLHLAA NG+L+++++L+ D + D++ + LH+AA G+ IV +LK
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375
+N DR G TPLHLAA+ ++V L +H + + +A++ + L +I+
Sbjct: 95 GAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA------DVNAQDALGLTAFDIS 145
Query: 376 RADGKE 381
G+E
Sbjct: 146 INQGQE 151
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
D V+IL N ++ D + PLH AAA+G +++ + LL+ + D G TPLH
Sbjct: 19 DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV-NASDSAGITPLH 77
Query: 265 LAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
LAA +G L+++++L+ D + D + + LH+AA G IV +LK
Sbjct: 78 LAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ D + D++ + LH+AA +G IV +LK+ +N
Sbjct: 13 AAAAGQDDEVRILMANGAD-VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD---VNAS 68
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNI-------ALEIAEITRAD 378
D G TPLHLAA H ++V L +H + ++ A +R+ + LEI E+
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGA-DVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 379 GKEI--QKHLTLKAL 391
G ++ Q L L A
Sbjct: 128 GADVNAQDALGLTAF 142
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE G +++++ L + + G T LH+A +++ +L+ +
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ TPLH+AA G+ IV ++K+ VN D
Sbjct: 66 ---------NASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-------------AYDR 103
Query: 121 EGNTPLHNAVTNQHKRVIRILVE 143
G TPLH A + ++ +L++
Sbjct: 104 AGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 15/141 (10%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCN-- 258
R D V+IL N ++ DW PLH AA +G++++ + LL+ Y D N
Sbjct: 23 RAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------YGADVNAW 76
Query: 259 ---GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
G TPLHLAA+NG L+++++L+ D + +D + LH+AA G+ IV +LK
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 316 PEMENLINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 136 GAD---VNAQDKFGKTAFDIS 153
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D G TPLHLAA+ G L+++++L+ KY + DN + LH+AA +G+ IV +LK
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N D G TPLHLAA H ++V L ++ + ++ A+++ + + I
Sbjct: 103 GAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 73 NLMDETPLHIAARIGNRAIVSEIVKYVPAVNQA--------------GPLPVLESLFR-- 116
+ + TPLH+AA+ G+ IV ++KY VN G L ++E L +
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHG 103
Query: 117 ----MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+D EG TPLH A + H ++ +L+ K + +K +T I+ID
Sbjct: 104 ADVNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ D + D + LH+AAK G+ IV +LK +N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD---VNAW 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS-------ARNNIALEIAEITRAD 378
D G TPLHLAA H ++V L +H + ++ AK+ A + LEI E+
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGA-DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 379 GKEI 382
G ++
Sbjct: 136 GADV 139
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILR----- 55
+ ++LLE R G +++++ L + + G+T LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 56 --QQNFIALRLHYS-----------LLRQ------KNLMDETPLHIAARIGNRAIVSEIV 96
N+ A LH + LL+ K+ TPLH+AA G+ IV ++
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 97 KYVPAVN 103
KY VN
Sbjct: 134 KYGADVN 140
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA++G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGI 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + DN + LH+AAK+G+ IV +LK
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D +G TPLHLAA NG L+++++L+ D + D + + LH+AA G+ IV +LK
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N D +G+TPLHLAA H ++V L +H + ++ A+++ + + I
Sbjct: 103 GAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + + G T LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ + +L TPLH+AA G+ IV ++K+ VN D
Sbjct: 71 ------ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA-------------YDN 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+G+TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 DGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFGKTAFDISID 155
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
+D +G TPLHLAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+ +N D++G TPLHLAA H ++V L + ++ A+++ + + I
Sbjct: 102 AGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISI 154
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + K D +G
Sbjct: 23 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGY 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK+
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A R + +++ +L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
K+ TPLH+AAR G+ IV ++K VN +D
Sbjct: 74 ---------NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-------------AKDK 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+G TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 DGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTAFDISID 155
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 363
+N D++G TPLHLAA H ++V L + ++ AK++
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAKDKDG 80
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N + D + R PLH AAA G++++ + LL + D NG
Sbjct: 11 RAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGT 69
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ KY + +D + + L++AA G+ IV +LK
Sbjct: 70 TPLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-- 126
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 127 -VNAQDKFGKTAFDIS 141
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 29/168 (17%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LHMA + +++ +LR +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 61 ALRLHYSLLRQKNLMDE---TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRM 117
N +D TPLH+AA +G+ IV ++KY VN
Sbjct: 62 ------------NAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA------------- 96
Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+D G TPL+ A H ++ +L+ K + +K +T I+ID
Sbjct: 97 KDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFGKTAFDISID 143
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ DA D+ R+ LH+AA G+ IV +L++ +N V
Sbjct: 9 AARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAV 64
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 363
D NG TPLHLAA H ++V L ++ + ++ AK+ +
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGA-DVNAKDATG 101
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G+ ++ + LL+ + RD +G
Sbjct: 23 RAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGW 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA+NG L+++++L+ KY + +D + LH+AA G+ IV +LK
Sbjct: 82 TPLHLAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
D G TPLHLAA G +++++L+ D + RD + LH+AA +G+ IV +LK
Sbjct: 43 HDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N D G TPLHLAA H ++V L +H + ++ A+++ + + I
Sbjct: 102 YGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G+T LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + ++ TPLH+AA G+ IV ++KY VN +D
Sbjct: 69 ----HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN-------------AQDA 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 YGLTPLHLAADRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISID 155
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKNRS-----ARNNIALEIAEIT 375
+N D G+TPLHLAA H ++V L +H + VN R + A +N LEI E+
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 376 RADGKEI 382
G ++
Sbjct: 100 LKYGADV 106
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
+SL D + T LH A + H ++ L++ VP + + A +PL IA A ++
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K + +N + T LH+ + ++I V +L G N D D ++ +
Sbjct: 89 VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ KLL+++ +I I
Sbjct: 144 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 201
Query: 290 DNSDRSILHVA 300
+ +++ L VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRD 86
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
+++K L+ K PDA +D+ + + +
Sbjct: 87 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAM 143
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
H AA GN ++ +L + N+ D GNTPLHLA
Sbjct: 144 HRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 180
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 64/182 (35%), Gaps = 65/182 (35%)
Query: 36 TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
T LH A + +++ E L Q + K+ +PLHIAA G IV +
Sbjct: 42 TALHWACSAGHTEIV-EFLLQLGVP--------VNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 96 VK---YVPAVNQAGPLPVLESLFRMR---------------------------------- 118
+ V AVNQ G P+ + + R
Sbjct: 93 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 119 ----------------DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI-NKAYQTPLS 161
D EGNTPLH A + ++LV + + S YI NK +TPL
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA--SIYIENKEEKTPLQ 210
Query: 162 IA 163
+A
Sbjct: 211 VA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 95/191 (49%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
+SL D + T LH A + H ++ L++ VP + + A +PL IA A ++
Sbjct: 31 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K + +N + T LH+ + ++I V +L G N D D ++ +
Sbjct: 90 VKALLGKGAQ-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDHYEATAM 144
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ KLL+++ +I I
Sbjct: 145 HRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIE 202
Query: 290 DNSDRSILHVA 300
+ +++ L VA
Sbjct: 203 NKEEKTPLQVA 213
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G+
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRD 87
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
+++K L+ K PDA +D+ + + +
Sbjct: 88 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYEATAM 144
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
H AA GN ++ +L + N+ D GNTPLHLA
Sbjct: 145 HRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHLAC 181
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 64/182 (35%), Gaps = 65/182 (35%)
Query: 36 TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
T LH A + +++ E L Q + K+ +PLHIAA G IV +
Sbjct: 43 TALHWACSAGHTEIV-EFLLQLGVP--------VNDKDDAGWSPLHIAASAGRDEIVKAL 93
Query: 96 VK---YVPAVNQAGPLPVLESLFRMR---------------------------------- 118
+ V AVNQ G P+ + + R
Sbjct: 94 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 119 ----------------DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI-NKAYQTPLS 161
D EGNTPLH A + ++LV + + S YI NK +TPL
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA--SIYIENKEEKTPLQ 211
Query: 162 IA 163
+A
Sbjct: 212 VA 213
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA SG++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGF 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ KY + D + + LH+AA G+ IV +LK
Sbjct: 82 TPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D G TPLHLAA +G L+++++L+ D ++ D + LH+AA G+ IV +LK
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N D G+TPLHLAA H ++V L ++ + ++ A+++ + + I
Sbjct: 103 GAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 5/118 (4%)
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
LT LH + + +I V++L + +D D + PLH AA +G++++ + LL+ +
Sbjct: 48 LTPLHLAAVSGHLEI-VEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 252 -AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308
A+ D G TPLHLAA+ G L+++++L+ KY + +D ++ ++ +GN ++
Sbjct: 107 NAF--DMTGSTPLHLAADEGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + ++ TPLH+AA G+ IV ++KY VN D+
Sbjct: 69 ----HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNA-------------FDM 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G+TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 TGSTPLHLAADEGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
+N VD G TPLHLAA+ H ++V L +H +
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D + PLH AA G++++ + LL+ + D +G
Sbjct: 23 RAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV-NALDFSGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA+ G L+++++L+ KY + D + LH+AA G+ IV +LK
Sbjct: 82 TPLHLAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
D G+TPLHLAA G L+++++L+ D + D S + LH+AAK G+ IV +LK
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N D G+TPLHLAA H ++V L ++ + ++ A+++ + + I
Sbjct: 102 YGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 25/166 (15%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G+T LH+A R + +++ +L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 61 -ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD 119
AL S TPLH+AA+ G+ IV ++KY VN D
Sbjct: 74 NALDFSGS----------TPLHLAAKRGHLEIVEVLLKYGADVNA-------------DD 110
Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G+TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 111 TIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ D + D + LH+AA+ G+ IV +LK+ +N +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD---VNAL 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
D +G+TPLHLAA H ++V L ++ +
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGA 104
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D+ PLH AA G++++ + LL+ + K D G
Sbjct: 23 RAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGV 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + D+ + LH+AAK G+ IV +LK+
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
RD G TPLHLAA G L+++++L+ D + +D+ + LH+AA+ G+ IV +LK
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPLHLAARRGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+ +N D +G TPLHLAA H ++V L ++ ++ A+++ + + I
Sbjct: 102 NGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN-GADVNAQDKFGKTAFDISI 154
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A F + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ + K+ + TPLH+AAR G+ IV ++K VN + D
Sbjct: 71 ------ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNAS-------------DS 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G TPLH A H ++ +L+ K+ + +K +T I+ID
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISID 155
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
T LH + +I V++L N ++ D PLH AA G++++ + LL+ +
Sbjct: 49 TPLHLAAHFGHLEI-VEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV- 106
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
D +G TPLHLAA+ G L+++++L+ D + +D ++ ++ +GN ++ +
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 313 LK 314
K
Sbjct: 166 QK 167
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 38/161 (23%)
Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
RD G TPLH A H ++ +L++ + D DS
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGA------------------DVNAKDSLG---- 80
Query: 178 KSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237
+T LH R + +I V++L N ++ D H PLH AA G+
Sbjct: 81 --------------VTPLHLAARRGHLEI-VEVLLKNGADVNASDSHGFTPLHLAAKRGH 125
Query: 238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
+++ + LL+ + +D G+T ++ +NG + ++L
Sbjct: 126 LEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D G TPLHL NG L+++++L+ KY + D S + LH+AA G+ IV +LK
Sbjct: 44 DWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N +D G TPLHLAA H ++V L ++ + ++ A+++ + + I
Sbjct: 103 GAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ DW PLH +G++++ + LL+ + + D +G
Sbjct: 23 RAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGW 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ KY + D + LH+AA+ G+ IV +LK
Sbjct: 82 TPLHLAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 192 LTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
+T LH VV + +I+ +L + D+ W PLH AA G++++ + LL+
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGW---TPLHLAAYRGHLEIVEVLLKYGA 104
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV 309
+ D G TPLHLAAE+G L+++++L+ KY + +D ++ ++ +GN ++
Sbjct: 105 DVN-AMDYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 310 SFILK 314
+ K
Sbjct: 163 EILQK 167
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 38/160 (23%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
D G TPLH V N H +I +L L A D +D + +
Sbjct: 44 DWFGITPLHLVVNNGHLEIIEVL------------------LKYAADVNASDKSGW---- 81
Query: 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNV 238
T LH R + +I+ +L + ++ +D+ PLH AA G++
Sbjct: 82 --------------TPLHLAAYRGHLEIVEVLLKYGAD-VNAMDYQGYTPLHLAAEDGHL 126
Query: 239 KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
++ + LL+ + +D G+T ++ +NG + ++L
Sbjct: 127 EIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQ--- 57
+ ++LLE R G +++++ L + + G T LH+ V + ++I +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 58 -----------NFIALRLHYSLLR-------QKNLMDE---TPLHIAARIGNRAIVSEIV 96
+ A R H ++ N MD TPLH+AA G+ IV ++
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 97 KYVPAVN 103
KY VN
Sbjct: 134 KYGADVN 140
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
D +G TPLHLAA G L+++++L+ D AI+I ++ LH+AA G+ IV +L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
K +N VD G+TPLHLAA+ H ++V L +H + ++ A+++ + + I
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + + G T LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + ++ TPLH+AA IG+ IV ++K+ VN D
Sbjct: 69 ----HGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-------------DT 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G+TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISID 155
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIXGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + D + LH+AA G+ IV +LK
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ D + D S + LH+AA +G+ IV +LK +N +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNATDASGLTPLHLAATYGHLEIVEVLLKHGAD---VNAI 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
D G+TPLHLAA+ H ++V L +H +
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGA 104
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 9/118 (7%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
D +G TPLHLAA G L+++++L+ D AI+I ++ LH+AA G+ IV +L
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTP---LHLAALIGHLEIVEVLL 100
Query: 314 KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
K +N VD G+TPLHLAA+ H ++V L +H + ++ A+++ + + I
Sbjct: 101 KHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + + G T LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + ++M TPLH+AA IG+ IV ++K+ VN D
Sbjct: 69 ----HGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV-------------DT 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G+TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 WGDTPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFGKTAFDISID 155
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-NAIDIMGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + D + LH+AA G+ IV +LK
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
+N D +G TPLHLAA H ++V L +H +
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D G TPLHLAA +G L+++++L+ D ++ D + LH+AA G+ IV +LK+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N +D +G TPLHLAA + ++V L +H + ++ A+++ + + I
Sbjct: 103 GAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA SG++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGY 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + D+ + LH+AAK G IV +LK
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + + G T LH+A + +++ +L+
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + ++ TPLH+AA G+ IV ++K VN D
Sbjct: 69 ----HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNA-------------MDS 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+G TPLH A + ++ +L+ K + +K +T I+ID
Sbjct: 112 DGMTPLHLAAKWGYLEIVEVLL-KHGADVNAQDKFGKTAFDISID 155
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
+N D G TPLHLAA H ++V L +H +
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
+SL D + T LH A + H ++ L++ VP + + A +PL IA A ++
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K +N + T LH+ + ++I V +L G N + D D +
Sbjct: 89 VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ K L+ + +I I
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 DNSDRSILHVA 300
+ +++ L VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGXD 86
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
+++K L+ K PDA +D+ D + +
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAM 143
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
H AA GN +V +L + N+ D GNTPLHLA
Sbjct: 144 HRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 67/182 (36%), Gaps = 65/182 (35%)
Query: 36 TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
T LH A + +++ E L Q + K+ +PLHIAA G IV +
Sbjct: 42 TALHWACSAGHTEIV-EFLLQLGVP--------VNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 96 V---KYVPAVNQAGPLP---------------VLES------------------------ 113
+ +V AVNQ G P +LE
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 114 ------LF-----RMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI-NKAYQTPLS 161
LF ++D EGNTPLH A + + LV + + S YI NK +TPL
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA--SIYIENKEEKTPLQ 210
Query: 162 IA 163
+A
Sbjct: 211 VA 212
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302
R+L + D +G TPLHLAA NG L+++++L+ D + D++ + L +AA
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAAL 89
Query: 303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS 362
G+ IV +LK+ +N D G+TPLHLAAM H ++V L ++ + ++ A+++
Sbjct: 90 FGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKF 145
Query: 363 ARNNIALEI 371
+ + I
Sbjct: 146 GKTAFDISI 154
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA +G++++ + LL+ + D G
Sbjct: 23 RAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGM 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPL LAA G L+++++L+ D + D + LH+AA G+ IV +LK+
Sbjct: 82 TPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + +++ +L+ +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + TPL +AA G+ IV ++K VN D+
Sbjct: 74 NAVDHAGM---------TPLRLAALFGHLEIVEVLLKNGADVNA-------------NDM 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
EG+TPLH A H ++ +L+ K+ + +K +T I+ID
Sbjct: 112 EGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISID 155
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 5/117 (4%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
D +G+TPLHLAA G L+++++L+ D + D + LH+AA +G+ IV +LK
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+ +N D G TPLHLAA H ++V L ++ + ++ A+++ + + I
Sbjct: 102 NGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D + PLH AA G++++ + LL+ + D G+
Sbjct: 23 RAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGD 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA G L+++++L+ D + D + LH+AA G+ IV +LK
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + + M +TPLH+AA G+ IV ++K VN D
Sbjct: 69 ----HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA-------------TDT 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 YGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKNRSARNNIA-----LEIAEIT 375
+N D +G TPLHLAA+ H ++V L +H + VN K ++A LEI E+
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 376 RADGKEI 382
+G ++
Sbjct: 100 LKNGADV 106
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
+SL D + T LH A + H ++ L++ VP + + A +PL IA A ++
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPL 229
++ K +N + T LH+ + ++I V +L G N + D D +
Sbjct: 89 VKALLVKGAH-VNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD---ATAM 143
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
H AAA GN+KM LL K +D G TPLHLA + +++ K L+ + +I I
Sbjct: 144 HRAAAKGNLKMVHILLF-YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA-SIYIE 201
Query: 290 DNSDRSILHVA 300
+ +++ L VA
Sbjct: 202 NKEEKTPLQVA 212
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 42/160 (26%)
Query: 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272
+K L R D R LH+A ++G+ ++ + LL+ + K D G +PLH+AA G+
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPLHIAASAGRD 86
Query: 273 KVLKLLINKY-----------------------------------PDAIEIRDNSDRSIL 297
+++K L+ K PDA +D+ D + +
Sbjct: 87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAM 143
Query: 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
H AA GN +V +L + N+ D GNTPLHLA
Sbjct: 144 HRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHLAC 180
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 67/182 (36%), Gaps = 65/182 (35%)
Query: 36 TVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEI 95
T LH A + +++ E L Q + K+ +PLHIAA G IV +
Sbjct: 42 TALHWACSAGHTEIV-EFLLQLGVP--------VNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 96 V---KYVPAVNQAGPLP---------------VLES------------------------ 113
+ +V AVNQ G P +LE
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 114 ------LF-----RMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI-NKAYQTPLS 161
LF ++D EGNTPLH A + + LV + + S YI NK +TPL
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGA--SIYIENKEEKTPLQ 210
Query: 162 IA 163
+A
Sbjct: 211 VA 212
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL-AYKRDCNG 259
R D V+IL N ++ D PLH AA G++++ + LL+ + AY D G
Sbjct: 23 RAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLG 80
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 319
TPLHLAA G L+++++L+ D + +D++ + LH+AA G+ IV +LK
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD- 138
Query: 320 NLINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 --VNAQDKFGKTAFDIS 153
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D G TPLHLAA G L+++++L+ D + D + LH+AA G+ IV +LK+
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N D NG TPLHLAA H ++V L ++ + ++ A+++ + + I
Sbjct: 103 GAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISI 154
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
T LH + +I V++L N ++ D PLH AA G++++ + LL+ +
Sbjct: 49 TPLHLAAYWGHLEI-VEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
K D NG TPLHLAA G L+++++L+ KY + +D ++ ++ +GN ++ +
Sbjct: 108 AKDD-NGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Query: 313 LK 314
K
Sbjct: 166 QK 167
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + + G T LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ + + + TPLH+AA G+ IV ++K VN +D
Sbjct: 71 ------ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA-------------KDD 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G TPLH A H ++ +L+ K + +K +T I+I+
Sbjct: 112 NGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIN 155
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 27/150 (18%)
Query: 240 MAQRLLEESKQ---------LAYKRDCN-----GETPLHLAAENGKLKVLKLLINKYPDA 285
+ ++LLE ++ +A D N G TPLHLAA G L+++++L+ D
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 286 IEIRDNSDRSI----LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLH 341
N+D S+ LH+AA G+ +V +LK+ +N D NG TPLHLAA H
Sbjct: 74 -----NADDSLGVTPLHLAADRGHLEVVEVLLKNGAD---VNANDHNGFTPLHLAANIGH 125
Query: 342 SDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
++V L +H + ++ A+++ + + I
Sbjct: 126 LEIVEVLLKHGA-DVNAQDKFGKTAFDISI 154
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-NADDSLGV 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
TPLHLAA+ G L+V+++L+ D + D++ + LH+AA G+ IV +LK
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD-- 138
Query: 321 LINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 139 -VNAQDKFGKTAFDIS 153
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + S G T LH+A F + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
+ + + + TPLH+AA G+ +V ++K VN D
Sbjct: 71 ------ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA-------------NDH 111
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
G TPLH A H ++ +L+ K + +K +T I+ID
Sbjct: 112 NGFTPLHLAANIGHLEIVEVLL-KHGADVNAQDKFGKTAFDISID 155
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 28/220 (12%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178
D + NTPL AV + +R++ L + + P+ Y NK+ ++ L A R +
Sbjct: 163 DCDENTPLXLAVLARRRRLVAYLXKAGADPTIY-NKSERSALHQAAANRDFGXXVY---- 217
Query: 179 SPESLNTTRLPDEL--------TLLHFVVMRQNYDIMV--KILGTNKELID-----RLD- 222
LN+T+L ++ T L V + D + K+L +D R D
Sbjct: 218 ---XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274
Query: 223 --WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
+ R LHYAA N + + L+ E K+D +G+TP+ LAA+ G+++V+ LI
Sbjct: 275 EKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Query: 281 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEME 319
+ ++E D +D + +A + + NIV + PE E
Sbjct: 335 QGA-SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 224 HQRNPLHYAAASGNVKMAQRLL-EESKQL------AYKRDCNGETPLHLAAENGKLKVLK 276
H R LH+ A++ + + ++ L+ E+K+ DC+ TPL LA + +++
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
L D I + S+RS LH AA + ++ + L S +++ I +DRNG T L +
Sbjct: 184 YLXKAGADPT-IYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIV 242
Query: 337 AMGLHSDVVFT 347
A D V +
Sbjct: 243 AHNEGRDQVAS 253
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
Q PLH+AA V + + LL+ + + +D G PLH A G +V +LL+ K+
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 99
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLVDRNGNTPLHLAAMG 339
+ + D + LH AA G + I +L+ P +N R+GNTPL L G
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVKDG 151
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 24/166 (14%)
Query: 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPG-GNTVLHMAVRFRNQQVIREILRQQNFI 60
D++LLE + GD +K+L Q++ G +T LH A + V+ +L+
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 63
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + K+ PLH A G+ + +VK+ VN A D+
Sbjct: 64 ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-------------DL 106
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
TPLH A + ++L++ + P+ N+ TPL + D
Sbjct: 107 WKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKDG 151
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
L LH +Y++ ++L + +++ D + PLH AAA G ++ + LL+
Sbjct: 76 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD- 133
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLL 278
K++ +G TPL L ++G + LL
Sbjct: 134 PTKKNRDGNTPLDL-VKDGDTDIQDLL 159
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317
+G TPLH AA+NG + +K L++K D + R + LH+AAK+G+ IV +L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTL-SRHKSVNIRAKNRS 362
+N ++GNTP HLA H ++V L ++ VN R+ S
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSS 109
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
PLH AA +G+ + ++LL + + R +G TPLHLAA+NG +++KLL+ K D +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VN 69
Query: 288 IRDNSDRSILHVAAKHGNWNIVSFI 312
R + H+A K+G+ IV +
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 22/117 (18%)
Query: 30 SSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89
S GNT LH A + + + ++++L + + R + N TPLH+AA+ G+
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-----KDGN----TPLHLAAKNGHA 55
Query: 90 AIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS 146
IV ++ VN R +GNTP H A N H ++++L K +
Sbjct: 56 EIVKLLLAKGADVN-------------ARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
PLH AA +G+ ++ + LL + + R +G TP HLA +NG +++KLL K D
Sbjct: 45 PLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+GNTPLHNA N H ++ L+ K + ++ +K TPL +A
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLA 49
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 5 LLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRL 64
L +NG ++K+L + + S GNT LH+A + + ++++ +L + + R
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR- 71
Query: 65 HYSLLRQKNLMDETPLHIAARIGNRAIV 92
+ N TP H+A + G+ IV
Sbjct: 72 ----SKDGN----TPEHLAKKNGHHEIV 91
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 327 RNGNTPLHLAAMGLHSDVVFT-LSRHKSVNIRAKNRS-----ARNNIALEIAEITRADGK 380
++GNTPLH AA H++ V LS+ VN R+K+ + A N EI ++ A G
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 381 EI 382
++
Sbjct: 67 DV 68
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
Q PLH+AA V + + LL+ + + +D G PLH A G +V +LL+ K+
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 101
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLVDRNGNTPLHLAAMG 339
+ + D + LH AA G + I +L+ P +N R+GNTPL L G
Sbjct: 102 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVKDG 153
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 24/166 (14%)
Query: 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPG-GNTVLHMAVRFRNQQVIREILRQQNFI 60
D++LLE + GD +K+L Q++ G +T LH A + V+ +L+
Sbjct: 11 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 65
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + K+ PLH A G+ + +VK+ VN A D+
Sbjct: 66 ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-------------DL 108
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
TPLH A + ++L++ + P+ N+ TPL + D
Sbjct: 109 WKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKDG 153
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
L LH +Y++ ++L + +++ D + PLH AAA G ++ + LL+
Sbjct: 78 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD- 135
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLL 278
K++ +G TPL L ++G + LL
Sbjct: 136 PTKKNRDGNTPLDL-VKDGDTDIQDLL 161
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
Q PLH+AA V + + LL+ + + +D G PLH A G +V +LL+ K+
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 103
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLVDRNGNTPLHLAAMG 339
+ + D + LH AA G + I +L+ P +N R+GNTPL L G
Sbjct: 104 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVKDG 155
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 24/166 (14%)
Query: 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPG-GNTVLHMAVRFRNQQVIREILRQQNFI 60
D++LLE + GD +K+L Q++ G +T LH A + V+ +L+
Sbjct: 13 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ----- 67
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDI 120
H + + K+ PLH A G+ + +VK+ VN A D+
Sbjct: 68 ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-------------DL 110
Query: 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
TPLH A + ++L++ + P+ N+ TPL + D
Sbjct: 111 WKFTPLHEAAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVKDG 155
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
L LH +Y++ ++L + +++ D + PLH AAA G ++ + LL+
Sbjct: 80 LVPLHNACSYGHYEV-AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD- 137
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLL 278
K++ +G TPL L ++G + LL
Sbjct: 138 PTKKNRDGNTPLDL-VKDGDTDIQDLL 163
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI-LHVAAKHGNWNIVSFILKSP 316
+G +PLH+AA +G+ ++ LL+ +A N+D+++ LH+A + G++ +V +L S
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITR 376
N +L +GNTPL A G H ++V L +H +I A N + N AL A I +
Sbjct: 143 AKPNKKDL---SGNTPLIYACSGGHHELVALLLQH-GASINASNN--KGNTALHEAVIEK 196
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI--NKYPD 284
+PLH AA G + LL+ A R+ + PLHLA + G +V+K L+ N P+
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 285 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344
+D S + L A G+ +V+ +L+ IN + GNT LH A + H V
Sbjct: 147 K---KDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFV 200
Query: 345 VFTLSRHKSVNIRAKNRSARNNIALEIAE 373
V L H +++ N+ R A++ AE
Sbjct: 201 VELLLLH-GASVQVLNK--RQRTAVDCAE 226
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQ-LAYKRDC-NGETP--LHLAAENGKLKVLKL 277
D+ + L A A G+++M + LLE +++ L D + P H + K +
Sbjct: 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQK 67
Query: 278 LINKYPDA---IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGN--TP 332
+ K P + + + S LHVAA HG +++ +LK + N RN + P
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-----HGANAGARNADQAVP 122
Query: 333 LHLAAMGLHSDVVFTL 348
LHLA H VV L
Sbjct: 123 LHLACQQGHFQVVKCL 138
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 22/105 (20%)
Query: 38 LHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVK 97
LH+A + + QV++ +L + +K+L TPL A G+ +V+ +++
Sbjct: 123 LHLACQQGHFQVVKCLLDSN---------AKPNKKDLSGNTPLIYACSGGHHELVALLLQ 173
Query: 98 YVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILV 142
+ ++N + + +GNT LH AV +H V+ +L+
Sbjct: 174 HGASINAS-------------NNKGNTALHEAVIEKHVFVVELLL 205
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 29 TSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGN 88
+S G++ LH+A +I +L+ H + +N PLH+A + G+
Sbjct: 81 VTSQDGSSPLHVAALHGRADLIPLLLK---------HGANAGARNADQAVPLHLACQQGH 131
Query: 89 RAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148
+V ++ N+ +D+ GNTPL A + H ++ +L++ +
Sbjct: 132 FQVVKCLLDSNAKPNK-------------KDLSGNTPLIYACSGGHHELVALLLQHGASI 178
Query: 149 SSYINKA 155
++ NK
Sbjct: 179 NASNNKG 185
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA 372
+N+ ++G++PLH+AA+ +D++ L +H + A R+A + L +A
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGA---NAGARNADQAVPLHLA 126
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 186 TRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL 245
R D+ LH + ++ ++ +L +N + ++ D PL YA + G+ ++ LL
Sbjct: 114 ARNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 246 EESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
+ + + G T LH A + V++LL+
Sbjct: 173 QHGASINASNN-KGNTALHEAVIEKHVFVVELLL 205
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)
Query: 75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
M PLH A V E++ P SL +D +G PLH +V+ Q
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 135 KRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE- 191
+ L+ K + Y + + TP IA + + D+ P + ++ ++
Sbjct: 49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQG 107
Query: 192 LTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
+T LH V ++ +++ ++ G + + D+ + + PLH AA+ G++K+ + L K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIELLCGLGK 164
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
+D G TPL A G LL+ KY ++ DN
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 262 PLHLAA-ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
PLH A EN KV +LL +K P + +D R LH + I SF+L E N
Sbjct: 5 PLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 321 LINLVDRNGNTPLHLAA 337
L + D +G TP H+A
Sbjct: 64 LDDYPDDSGWTPFHIAC 80
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 21/215 (9%)
Query: 77 ETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGN---TPLHNAVTNQ 133
+TPLHIA GN V +V Q G R DI N TPLH AV
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNL---FQQGG---------RELDIYNNLRQTPLHLAVITT 57
Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK-SPESLN-TTRLPDE 191
V+R+LV + P + +++ QT +A + R ++D +P +L+ R D
Sbjct: 58 LPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ-RNPLHYAAASGNVKMAQRLLEESKQ 250
LT LH V + + V++L ID +D R+PL +A + ++ M Q LL+
Sbjct: 117 LTALHVAVNTECQET-VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
+ + +G + LH A+ G L +++ L+ D+
Sbjct: 176 VNAQM-YSGSSALHSASGRGLLPLVRTLVRSGADS 209
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNG---ETPLHLAAENGKLKVLK 276
R D PLH A GN+ RL+ +Q + D +TPLHLA V++
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRN--GNTPLH 334
LL+ + + D ++ H+A +H + + +L S ++L RN G T LH
Sbjct: 64 LLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLTALH 121
Query: 335 LA 336
+A
Sbjct: 122 VA 123
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA---IEIRDNSDRSILHVAAKHGNWN 307
+A + D +G+TPLH+A G L + L+N + ++I +N ++ LH+A +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 308 IVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+V ++ + + DR+G T HLA
Sbjct: 61 VVRLLVTAGASPMAL---DRHGQTAAHLAC 87
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)
Query: 75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
M PLH A V E++ P SL +D +G PLH +V+ Q
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 135 KRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE- 191
+ L+ K + Y + + TP IA + + D+ P + ++ ++
Sbjct: 49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQG 107
Query: 192 LTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
+T LH V ++ +++ ++ G + + D+ + + PLH AA+ G++K+ + L K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIELLCGLGK 164
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
+D G TPL A G LL+ KY ++ DN
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 262 PLHLAA-ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
PLH A EN KV +LL +K P + +D R LH + I SF+L E N
Sbjct: 5 PLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 321 LINLVDRNGNTPLHLAA 337
L + D +G TP H+A
Sbjct: 64 LDDYPDDSGWTPFHIAC 80
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%)
Query: 75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
M PLH A V E++ P SL +D +G PLH +V+ Q
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 135 KRVIRILVEK--DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE- 191
+ L+ K + Y + + TP IA + + D+ P + ++ ++
Sbjct: 49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQG 107
Query: 192 LTLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
+T LH V ++ +++ ++ G + + D+ + + PLH AA+ G++K+ + L K
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFN---QIPLHRAASVGSLKLIELLCGLGK 164
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
+D G TPL A G LL+ KY ++ DN
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 262 PLHLAA-ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
PLH A EN KV +LL +K P + +D R LH + I SF+L E N
Sbjct: 5 PLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 321 LINLVDRNGNTPLHLAA 337
L + D +G TP H+A
Sbjct: 64 LDDYPDDSGWTPFHIAC 80
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 13/171 (7%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252
T LH+ V N+ ++ ++L + +D+ + +P+ A + Q +E QL
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA--TLKTQDDIETVLQLF 170
Query: 253 YKRDCN------GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW 306
+ N G+T L LA +G++ V+K L+ D + ++D+ + L A +HG+
Sbjct: 171 RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHK 229
Query: 307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357
I +L P + I+L DR+G+T L +A S++ L + +NI+
Sbjct: 230 EIAGLLLAVPSCD--ISLTDRDGSTALMVALDAGQSEIASML--YSRMNIK 276
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 26 IFSTSSPGGNTVLHMAVRFRNQQVIREILR-------QQNF-----IALRLHYSLLRQKN 73
+ + + GNT LH +V N V++++L +QN I L +L Q +
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 74 LMDETPLHIAARIGN---RAIVSEIVKYVPAVNQAGPLPVLESLF------RMRDIEGNT 124
+ ET L + R+GN +A + + AV+ G + V+++L ++D +G+T
Sbjct: 163 I--ETVLQLF-RLGNINAKASQAGQTALMLAVSH-GRVDVVKALLACEADVNVQDDDGST 218
Query: 125 PLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDA 166
L A + HK + +L+ S S ++ T L +A+DA
Sbjct: 219 ALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDA 260
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 32/203 (15%)
Query: 110 VLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLN 169
+L+ + + D GNT LH +V++ + V++ L++ N+A +P+ +
Sbjct: 99 LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT------ 152
Query: 170 DSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPL 229
+L T + D++ + + N + G + L
Sbjct: 153 ------------ALATLKTQDDIETVLQLFRLGNINAKASQAG-------------QTAL 187
Query: 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIR 289
A + G V + + LL + + D +G T L A E+G ++ LL+ I +
Sbjct: 188 MLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGHKEIAGLLLAVPSCDISLT 246
Query: 290 DNSDRSILHVAAKHGNWNIVSFI 312
D + L VA G I S +
Sbjct: 247 DRDGSTALMVALDAGQSEIASML 269
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMG---LHS 342
+ I D++ + LH + H N+ +V +L S + ++ +R G +P+ L A+
Sbjct: 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK--VDKQNRAGYSPIMLTALATLKTQD 161
Query: 343 DVVFTLSRHKSVNIRAKNRSA 363
D+ L + NI AK A
Sbjct: 162 DIETVLQLFRLGNINAKASQA 182
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA G++++ + LL+ + RD G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NARDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHLAA G L+++++L+ +Y + +D ++ ++ +GN ++ + K
Sbjct: 82 TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 17/96 (17%)
Query: 73 NLMDE---TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
N MD+ TPLH+AA+ G+ IV ++K+ VN RDI G TPLH A
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-------------RDIWGRTPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
T H ++ +L+E + ++ +K +T I+ID
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISID 122
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + + +++ +L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
H + + +++ TPLH+AA +G+ IV +++Y VN
Sbjct: 69 ----HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIR 357
+N +D G TPLHLAA H ++V L +H + VN R
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
GN + L+ ++ + D +G +PLH A G+ V+++LI + I + + D +
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDT 74
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
LH+AA HG+ +IV +L + + IN V+ +GN PLH A
Sbjct: 75 PLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 24 QNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA 83
+N + G + LH A R V+ ++ + + + N D+TPLH+A
Sbjct: 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLI---------MRGARINVMNRGDDTPLHLA 79
Query: 84 ARIGNRAIVSEIVKY---VPAVNQAGPLPVLESLFRMRD 119
A G+R IV ++++Y + AVN+ G +P+ + F +D
Sbjct: 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNG 329
G ++L ++ + + D+ S LH A + G +V ++ IN+++R
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGD 72
Query: 330 NTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRAD 378
+TPLHLAA H D+V L ++K+ +I A N N+ L A D
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHG--NVPLHYACFWGQD 118
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 197 FVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR 255
F R+ + V++ N E +++ D H +PLH+A G + + L+ ++
Sbjct: 10 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 69
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
+ +TPLHLAA +G +++ L+ +Y I + LH A G + ++ +
Sbjct: 70 RGD-DTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 127
Query: 316 PEMENLINLVDRNGNTPLHLA 336
L+++ ++ G P+ A
Sbjct: 128 GA---LVSICNKYGEMPVDKA 145
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 8 VLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI-ALRLHY 66
R G ++ L +R + + G +T LH+A ++ +++++L+ + I A+ H
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Query: 67 SLLRQKNLMDETPLHIAARIGNRAIVSEIV---KYVPAVNQAGPLPVLESLFRMRDI 120
++ PLH A G + ++V V N+ G +PV ++ +R++
Sbjct: 106 NV----------PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
GN + L+ ++ + D +G +PLH A G+ V+++LI + I + + D +
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDT 69
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
LH+AA HG+ +IV +L + + IN V+ +GN PLH A
Sbjct: 70 PLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 109
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 24 QNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIA 83
+N + G + LH A R V+ ++ + I + N D+TPLH+A
Sbjct: 24 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV---------MNRGDDTPLHLA 74
Query: 84 ARIGNRAIVSEIVKY---VPAVNQAGPLPVLESLFRMRD 119
A G+R IV ++++Y + AVN+ G +P+ + F +D
Sbjct: 75 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 113
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNG 329
G ++L ++ + + D+ S LH A + G +V ++ IN+++R
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGD 67
Query: 330 NTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRAD 378
+TPLHLAA H D+V L ++K+ +I A N N+ L A D
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHG--NVPLHYACFWGQD 113
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 197 FVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR 255
F R+ + V++ N E +++ D H +PLH+A G + + L+ ++
Sbjct: 5 FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 64
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
+ +TPLHLAA +G +++ L+ +Y I + LH A G + ++ +
Sbjct: 65 RGD-DTPLHLAASHGHRDIVQKLL-QYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 316 PEMENLINLVDRNGNTPL 333
L+++ ++ G P+
Sbjct: 123 GA---LVSICNKYGEMPV 137
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251
+ LH+ R+ +V++L I+ ++ PLH AA+ G+ + Q+LL+
Sbjct: 35 FSPLHWAC-REGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ----- 88
Query: 252 AYKRDCN-----GETPLHLAAENGKLKVLKLLI 279
YK D N G PLH A G+ +V + L+
Sbjct: 89 -YKADINAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 14/117 (11%)
Query: 8 VLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI-ALRLHY 66
R G ++ L +R + + G +T LH+A ++ +++++L+ + I A+ H
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 100
Query: 67 SLLRQKNLMDETPLHIAARIGNRAIVSEIV---KYVPAVNQAGPLPVLESLFRMRDI 120
++ PLH A G + ++V V N+ G +PV ++ +R++
Sbjct: 101 NV----------PLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 147
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHLAA G L+++++L+ +Y + +D ++ ++ +GN ++ + K
Sbjct: 82 TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 17/96 (17%)
Query: 73 NLMDE---TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
N MD+ TPLH+AA+ G+ IV ++K+ VN + D G TPLH A
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-------------DSWGRTPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
T H ++ +L+E + ++ +K +T I+ID
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISID 122
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D G TPLHLAA+ G L+++++L+ D + D+ R+ LH+AA G+ IV +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 316 PEMENLINLVDRNGNTPLHLA 336
E +N D+ G T ++
Sbjct: 101 -EYGADVNAQDKFGKTAFDIS 120
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + + +++ +L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
H + + + TPLH+AA +G+ IV +++Y VN
Sbjct: 69 ----HGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSAR 364
+N +D G TPLHLAA H ++V L +H + ++ A + R
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA-DVNASDSWGR 81
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 10/117 (8%)
Query: 229 LHYAAASGNVKMAQRLLEES---KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
LH+AA + + + + + + QL D N TPLH A G L ++ L+ KY
Sbjct: 46 LHWAAINNRIDLVKYYISKGAIVDQLG--GDLN-STPLHWATRQGHLSMVVQLM-KYGAD 101
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHS 342
+ D S +H+AA+ G+ +IV++++ + ++++D+NG TPL AA HS
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHS 155
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN 320
T LH AA N ++ ++K I+K ++ + + + LH A + G+ ++V ++K +
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 321 LINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 360
LI D G + +HLAA H+ +V + +++ + V++ +N
Sbjct: 104 LI---DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN 141
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 79/194 (40%), Gaps = 49/194 (25%)
Query: 75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH 134
++ TPLH A R G+ ++V +++KY G P L D EG + +H A H
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKY-------GADPSL------IDGEGCSCIHLAAQFGH 121
Query: 135 KRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTL 194
++ L+ K +++ TPL A S++ TRL L
Sbjct: 122 TSIVAYLIAKGQ-DVDMMDQNGMTPLMWAA-------------YRTHSVDPTRL-----L 162
Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK 254
L F V + L D+ +H+ LH+A +GN + LLE +
Sbjct: 163 LTFNV--------------SVNLGDK--YHKNTALHWAVLAGNTTVISLLLEAGANVD-A 205
Query: 255 RDCNGETPLHLAAE 268
++ GE+ L LA +
Sbjct: 206 QNIKGESALDLAKQ 219
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ LD PLH AA G++++ + LL+ Y D N E
Sbjct: 23 RAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK------YGADVNAE 76
Query: 261 -----TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHLAA G L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D +G TPLHLAA+ G L+++++L+ KY + DN + LH+AA G+ IV +LK
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
Query: 316 PEMENLINLVDRNGNTPLHLA 336
+N D+ G T ++
Sbjct: 103 GAD---VNAQDKFGKTAFDIS 120
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 73 NLMDE---TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
N +DE TPLH+AA++G+ IV ++KY VN D G TPLH A
Sbjct: 41 NALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA-------------EDNFGITPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
H ++ +L+ K + +K +T I+ID
Sbjct: 88 AIRGHLEIVEVLL-KHGADVNAQDKFGKTAFDISID 122
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ D + D + LH+AA+ G+ IV +LK +N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAE 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
D G TPLHLAA+ H ++V L +H + ++ A+++ + + I
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 121
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + + +++ +L+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
++ + TPLH+AA G+ IV ++K+ VN
Sbjct: 74 NAEDNFGI---------TPLHLAAIRGHLEIVEVLLKHGADVN 107
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ +D PLH AA G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHLAA G L+++++L+ +Y + +D ++ ++ +GN ++ + K
Sbjct: 82 TPLHLAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 17/96 (17%)
Query: 73 NLMDE---TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNA 129
N MD+ TPLH+AA+ G+ IV ++K+ VN + DI G TPLH A
Sbjct: 41 NAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-------------DIWGRTPLHLA 87
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
T H ++ +L+E + ++ +K +T I+ID
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQ-DKFGKTAFDISID 122
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + + +++ +L+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
H + + ++ TPLH+AA +G+ IV +++Y VN
Sbjct: 69 ----HGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 315
D G TPLHLAA+ G L+++++L+ D + D R+ LH+AA G+ IV +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLL-- 100
Query: 316 PEMENLINLVDRNGNTPLHLA 336
E +N D+ G T ++
Sbjct: 101 -EYGADVNAQDKFGKTAFDIS 120
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
+N +D G TPLHLAA H ++V L +H +
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--- 249
T LH V+ +I +LG + R D+ PLH A G + L +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 250 --QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307
+ + NG T LHLA+ +G L +++LL++ D + R+ LH+A N +
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 308 IVSFILKSPEMENLINLVDRNGNTPLHL 335
+VS +LK +N V G +P L
Sbjct: 163 LVSLLLKCGAD---VNRVTYQGYSPYQL 187
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWH---QRNPLHYAAASGNVKMAQRLLE 246
D + LH ++ + + ++++ K + L++ Q+ PLH A + ++A+ LL
Sbjct: 4 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 63
Query: 247 ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----IEIRDNSDRSILHVAA 301
RD G TPLHLA E G L + +L ++ + + + LH+A+
Sbjct: 64 AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 302 KHGNWNIVSFILKSPEMENLINLVD-RNGNTPLHLA 336
HG IV ++ + +N + NG T LHLA
Sbjct: 123 IHGYLGIVELLVS---LGADVNAQEPCNGRTALHLA 155
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 41/224 (18%)
Query: 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
G++ LH+A+ + + E++RQ ++ + L +N + +TPLH+A I N+ ++
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQ-----VKGDLAFLNFQNNLQQTPLHLAV-ITNQPEIA 58
Query: 94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
E A+ AG P +RD GNTPLH A + +L + + P +
Sbjct: 59 E------ALLGAGCDP------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH-- 104
Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL-------------TLLHFVVM 200
SI N C + L L L T LH V
Sbjct: 105 -------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 157
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
QN D++ +L + ++R+ + +P + ++ Q+L
Sbjct: 158 LQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQL 200
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS---P 316
+TPLHLA + ++ + L+ D E+RD + LH+A + G V + +S P
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 317 EMENLINLVDRNGNTPLHLAAM 338
+ +++ + NG+T LHLA++
Sbjct: 102 HLHSILKATNYNGHTCLHLASI 123
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 9/149 (6%)
Query: 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--- 249
T LH V+ +I +LG + R D+ PLH A G + L +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 250 --QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307
+ + NG T LHLA+ +G L +++LL++ D + R+ LH+A N +
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 308 IVSFILKSPEMENLINLVDRNGNTPLHLA 336
+VS +LK +N V G +P L
Sbjct: 166 LVSLLLKCGAD---VNRVTYQGYSPYQLT 191
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWH---QRNPLHYAAASGNVKMAQRLLE 246
D + LH ++ + + ++++ K + L++ Q+ PLH A + ++A+ LL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 66
Query: 247 ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA-----IEIRDNSDRSILHVAA 301
RD G TPLHLA E G L + +L ++ + + + LH+A+
Sbjct: 67 AGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 302 KHGNWNIVSFILKSPEMENLINLVD-RNGNTPLHLA 336
HG IV ++ + +N + NG T LHLA
Sbjct: 126 IHGYLGIVELLVS---LGADVNAQEPCNGRTALHLA 158
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 41/224 (18%)
Query: 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
G++ LH+A+ + + E++RQ ++ + L +N + +TPLH+A I N+ ++
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQ-----VKGDLAFLNFQNNLQQTPLHLAV-ITNQPEIA 61
Query: 94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153
E A+ AG P +RD GNTPLH A + +L + + P +
Sbjct: 62 E------ALLGAGCDP------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLH-- 107
Query: 154 KAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL-------------TLLHFVVM 200
SI N C + L L L T LH V
Sbjct: 108 -------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRL 244
QN D++ +L + ++R+ + +P + ++ Q+L
Sbjct: 161 LQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQL 203
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS---P 316
+TPLHLA + ++ + L+ D E+RD + LH+A + G V + +S P
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 317 EMENLINLVDRNGNTPLHLAAM 338
+ +++ + NG+T LHLA++
Sbjct: 105 HLHSILKATNYNGHTCLHLASI 126
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 136/325 (41%), Gaps = 44/325 (13%)
Query: 4 ELLEVLRNGDENKIKQLALRQNIFSTSSPG-GNTVLHMAVRFRNQQVIREILRQQNFIAL 62
ELLE R+G+E K+ L N+ +S G +T LH+A + ++++ +L+
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ------- 79
Query: 63 RLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEG 122
H + + K+ PLH A G+ + ++K+ VN D+
Sbjct: 80 --HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-------------AMDLWQ 124
Query: 123 NTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPES 182
TPLH A + V +L+ + P + +N ++ + +A L + + K
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEF-KGHSL 182
Query: 183 LNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVK--- 239
L R D + + + ++I+ + LH A AS + K
Sbjct: 183 LQAAREAD--------LAKVKKTLALEIINFKQP------QSHETALHCAVASLHPKRKQ 228
Query: 240 MAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV 299
+A+ LL + + K + TPLH+AAE V+++L +K+ + D+ ++ LH
Sbjct: 229 VAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVL-HKHGAKMNALDSLGQTALHR 286
Query: 300 AAKHGNWNIVSFILKSPEMENLINL 324
AA G+ +L ++I+L
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISL 311
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYP 283
++++ L AA SGN + LL + D TPLHLAA ++++++LL+
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 284 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSD 343
D + +D LH A +G++ + +LK +N +D TPLH AA +
Sbjct: 83 D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA---CVNAMDLWQFTPLHEAASKNRVE 138
Query: 344 VVFTLSRHKS----VNIRAKN 360
V L H + VN K+
Sbjct: 139 VCSLLLSHGADPTLVNCHGKS 159
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 11/190 (5%)
Query: 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
D + PLH AA V++ Q LL+ + + +D G PLH A G +V +LL+ K
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL-K 112
Query: 282 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMG-L 340
+ + D + LH AA + S +L L+N +G + + +A L
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC---HGKSAVDMAPTPEL 169
Query: 341 HSDVVFTLSRHKSVNI--RAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR 398
+ + H + A + +ALEI + E H + +L + KR
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL---HPKR 226
Query: 399 ALSAEELQQK 408
AE L +K
Sbjct: 227 KQVAELLLRK 236
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 44/193 (22%)
Query: 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLL------ 245
L LH +Y++ ++L + ++ +D Q PLH AA+ V++ LL
Sbjct: 92 LVPLHNACSYGHYEV-TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 246 -----------------EESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
E ++L Y + G + L A E KV K L A+EI
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTY--EFKGHSLLQAAREADLAKVKKTL------ALEI 202
Query: 289 ----RDNSDRSILH--VAAKHGNWNIVSFILKSPEMENLINLVDRNGN--TPLHLAAMGL 340
+ S + LH VA+ H V+ +L + N+ ++N + TPLH+AA
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELL----LRKGANVNEKNKDFMTPLHVAAERA 258
Query: 341 HSDVVFTLSRHKS 353
H+DV+ L +H +
Sbjct: 259 HNDVMEVLHKHGA 271
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 111/268 (41%), Gaps = 39/268 (14%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH+AA IV ++++ V+ +D G PLHNA + H V
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVH-------------AKDKGGLVPLHNACSYGHYEV 106
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHF 197
+L++ + ++ ++ TPL A + ++ +
Sbjct: 107 TELLLKHGACVNA-MDLWQFTPLHEAASKNRVEVCSLLLSHGADP--------------- 150
Query: 198 VVMRQNYDIMVKILGTNKELIDRLDWH-QRNPLHYAAASGNVKMAQRLLEESKQLAYKRD 256
+ + + EL +RL + + + L AA ++ ++ L + + +K+
Sbjct: 151 -TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA-LEIINFKQP 208
Query: 257 CNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
+ ET LH A + + +V +LL+ K + E ++ + LHVAA+ + +++ +
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 314 KSPEMENLINLVDRNGNTPLHLAAMGLH 341
K +N +D G T LH AA+ H
Sbjct: 268 KHGAK---MNALDSLGQTALHRAALAGH 292
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
G+ +A LL++ +D +G +P+H AA G L LK+L+ D + + D +
Sbjct: 46 GSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGAL 103
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
+H+A + G+ +VSF+ E+ ++ D G TPL LA D+V L H
Sbjct: 104 PIHLAVQEGHTAVVSFL----AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
P+H A G+ + L ES ++RD G TPL LA + G ++ +L
Sbjct: 104 PIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 236 GNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295
G+ +A LL++ +D +G +P+H AA G L LK+L+ D + + D +
Sbjct: 52 GSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGAL 109
Query: 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351
+H+A + G+ +VSF+ E+ ++ D G TPL LA D+V L H
Sbjct: 110 PIHLAVQEGHTAVVSFL----AAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 228 PLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
P+H A G+ + L ES ++RD G TPL LA + G ++ +L
Sbjct: 110 PIHLAVQEGHTAVVSFLAAESD--LHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
+H AA G + + L + L K D G TPL A+ G+++ ++ L+ D I
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
S L +A+ G +IV +L E + IN+ D NG TPL A G H V L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL 386
+ ++ + S + L +A R + I+ H+
Sbjct: 122 -LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
Y +V +L I+ DW+ PL YA +VK + LL L + D +G TP
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTP 138
Query: 263 LHLAAENGKLKVLKLLIN 280
+ LA G KV +++ N
Sbjct: 139 MDLAVALGYRKVQQVIEN 156
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
+H AA G + + L + L K D G TPL A+ G+++ ++ L+ D I
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348
S L +A+ G +IV +L E + IN+ D NG TPL A G H V L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL 386
+ ++ + S + L +A R + I+ H+
Sbjct: 122 LA-RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
Y +V +L I+ DW+ PL YA +VK + LL L + D +G TP
Sbjct: 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTP 138
Query: 263 LHLAAENGKLKVLKLLIN 280
+ LA G KV +++ N
Sbjct: 139 MDLAVALGYRKVQQVIEN 156
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ---L 251
+H + + D + + L L+++ D PL +A+A G ++ + LLE L
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAAKHGN 305
A +R E+ L LA+ G ++ LL+ + D I I D N +L+ A HGN
Sbjct: 66 AKER----ESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLY--AVHGN 113
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH A+ G++ + LL+ K D G TPLH A +G LKV++LL+ ++ +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLL-QHKALVNT 71
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 324
+ S LH AAK+G+ +IV +L N +N+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 318
GET LH+A+ G + ++ L+ D ++D++ + LH A HG+ +V +L +
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLL---QH 65
Query: 319 ENLINLVDRNGNTPLHLAAMGLHSDVV 345
+ L+N ++PLH AA H D+V
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIV 92
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 193 TLLHFVVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ 250
TLLH ++ + + +L G++ + D W PLH A G++K+ + LL+ K
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHLKVVELLLQH-KA 67
Query: 251 LAYKRDCNGETPLHLAAENGKLKVLKLLIN 280
L ++PLH AA+NG + ++KLL++
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 22/109 (20%)
Query: 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93
G T+LH+A + + +L+ + ++ H TPLH A G+ +V
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---------TPLHEACNHGHLKVVE 60
Query: 94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILV 142
++++ VN G + ++PLH+A N H ++++L+
Sbjct: 61 LLLQHKALVNTTG-------------YQNDSPLHDAAKNGHVDIVKLLL 96
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 15/73 (20%)
Query: 106 GPLPVLESLFR------MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP 159
G +P +E L + ++D G TPLH A + H +V+ +L++ ++ ++ YQ
Sbjct: 21 GDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT---TGYQN- 76
Query: 160 LSIAIDARLNDSA 172
D+ L+D+A
Sbjct: 77 -----DSPLHDAA 84
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 294 RSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
++LH+A+ G+ V ++L++ N+ D G TPLH A H VV L +HK+
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHLKVVELLLQHKA 67
Query: 354 V 354
+
Sbjct: 68 L 68
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 31/174 (17%)
Query: 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK 249
D LT LH + N D MVK L N I++ D PLH AA+ G + +A+ L+ +
Sbjct: 72 DGLTALHQACIDDNVD-MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 250 QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE----------IRD--------- 290
+ + G+TPL +A E ++L+ +N+ IE +RD
Sbjct: 131 HVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 291 -------NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
S + LHVAA G ++ ++++ +N+ D +G TPLH AA
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAA 240
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 86/220 (39%), Gaps = 39/220 (17%)
Query: 98 YVPAVNQAGPLPVLESLFRMRDI-----EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYI 152
++ A + VL L R DI +G T LH A + + +++ LVE + +
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 153 NKAYQTPLSIAIDARLNDSACFIIDKSPE----------SLNTTRLPDELTLLHFVVMRQ 202
N+ + PL A D A ++I + L+ LL V RQ
Sbjct: 104 NEGW-IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 203 NYDIMVKILGTNKE-----LIDRLDW----------HQRN---PLHYAAASGNVKMAQRL 244
DI KE L D W H ++ LH AAA G ++ + L
Sbjct: 163 GVDIEA----ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 245 LEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
++ + K D +G TPLH AA GK + ++L+ D
Sbjct: 219 IQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILVENLCD 257
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
T LH+AA G ++ +++ VN ++D +G TPLH A +
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVN-------------IKDYDGWTPLHAAAHWGKEEA 247
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIA 163
RILVE + +NK QT +A
Sbjct: 248 CRILVE-NLCDMEAVNKVGQTAFDVA 272
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 26/166 (15%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L F+T G + LH+A ++ + +LR
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTTDWLG-TSPLHLAAQYGHFSTTEVLLRA---- 56
Query: 61 ALRLHYSLLRQ-KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD 119
+ R + +D TPLH+AA G+ IV ++K+ VN +D
Sbjct: 57 ------GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-------------KD 97
Query: 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+ T LH A + H+ V+ +L+ K +K +T I+ID
Sbjct: 98 MLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCKTAFDISID 142
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N DW +PLH AA G+ + LL + RD +
Sbjct: 11 RAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLL----RAGVSRDARTK 65
Query: 261 ---TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLH+AA G ++++L+ D + +D + LH A +H + +V ++K
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 253 YKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
+ D G +PLHLAA+ G ++L+ + + + R DR+ LH+AA G+ NIV +
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 313 LKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS 353
LK +N D T LH A H +VV L ++ +
Sbjct: 87 LKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH AA+ G+ + + LL+ + K D T LH A E+ +V++LLI KY
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLI-KYGAD 125
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFI 312
+ + ++ ++ +GN ++ +
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA ++++ + LL+ + D +G
Sbjct: 23 RAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGS 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHLAA G L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + + GNT LH+A + + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK----- 68
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
H + + + TPLH+AA G+ IV ++K+ VN
Sbjct: 69 ----HGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH+AA + IV ++K+ VN D +G+TPLH A H +
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVN-------------AHDNDGSTPLHLAALFGHLEI 95
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAID 165
+ +L+ K + +K +T I+ID
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISID 122
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-VNIRAKNRSARNNIA-----LEIAEIT 375
+N DR GNTPLHLAA H ++V L +H + VN + S ++A LEI E+
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 376 RADGKEIQKHLTLKALKTAY 395
G ++ KTA+
Sbjct: 100 LKHGADVNAQDKFG--KTAF 117
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 119 DIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
D +GNTPLH A H ++ +L++ + +++ N TPL +A
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STPLHLA 87
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D + PL+ A A G++++ + LL+ + D G
Sbjct: 23 RAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGF 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHLAA G L++ ++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ D + +D + L++A HG+ IV +LK+ +N V
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAV 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIA 372
D G TPLHLAA H ++ L +H + ++ A+++ + + I
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQDKFGKTAFDISIG 122
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T L++A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
+ + + + TPLH+AA IG+ I ++K+ VN
Sbjct: 71 ------ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D+ PLH AA G++++ + LL+ + + G
Sbjct: 23 RAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GR 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHLAA L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302
R+L + D G TPLHLAA G L+++++L+ D + N+ R+ LH+AA
Sbjct: 31 RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD-VNATGNTGRTPLHLAAW 89
Query: 303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
+ IV +LK +N D+ G T ++
Sbjct: 90 ADHLEIVEVLLKHGAD---VNAQDKFGKTAFDIS 120
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH+AA +G+ IV ++K VN G G TPLH A H +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGN-------------TGRTPLHLAAWADHLEI 95
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAID 165
+ +L+ K + +K +T I+ID
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISID 122
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L D + D + LH+AA G+ IV +LK+ +N
Sbjct: 21 AARAGQDDEVRILTANGAD-VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---VNAT 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
G TPLHLAA H ++V L +H + ++ A+++ + + I
Sbjct: 77 GNTGRTPLHLAAWADHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 121
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + + G+T LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
+ + TPLH+AA + IV ++K+ VN
Sbjct: 71 ------ADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA + ++++ + LL+ + D GE
Sbjct: 23 RAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV-NAIDAIGE 81
Query: 261 TPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
TPLHL A G L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+ +++L+ D + D + LH+AA + + IV +LK+ +N +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD---VNAI 76
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
D G TPLHL AM H ++V L +H + ++ A+++ + + I
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISI 121
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 1 MDQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFI 60
+ ++LLE R G +++++ L + G T LH+A + +++ +L+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG--- 70
Query: 61 ALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVN 103
+ + + + ETPLH+ A G+ IV ++K+ VN
Sbjct: 71 ------ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 122 GNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI 162
G TPLH A N H ++ +L+ K+ + I+ +TPL +
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDAIGETPLHL 86
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
TPLH+AA + IV ++K VN D G TPLH H +
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAI-------------DAIGETPLHLVAMYGHLEI 95
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAID 165
+ +L+ K + +K +T I+ID
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISID 122
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
LL PD ++D + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
A H VV L +H + N+ +N + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 198 VVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR 255
V+ N +I ++L G N +L DR + +H AA +G + Q LLE + +
Sbjct: 44 VMKLGNPEIARRLLLRGANPDLKDRTGFA---VIHDAARAGQLDTLQTLLEFQADVNIE- 99
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
D G PLHLAA+ G L+V++ L+ + R++ + +A +G +VS +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETP---LHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN----------- 97
Query: 115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGNV-KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
+H AA G + +A R+ E + + D G TPL AA +G++ V++ L+ D +
Sbjct: 23 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 79
Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
+ S L +A G +IV +L +N D NG TPL A G H V
Sbjct: 80 LLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKM 136
Query: 348 LSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK 392
L + + S N++ L +A R+ + I+ HL LK L+
Sbjct: 137 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 179
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--QLAYKRDCNGETPLHLAAENGKLKV 274
+I+ D PL +AAA G + + + LL+ QL K E+ L LA G +
Sbjct: 44 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYTDI 100
Query: 275 LKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305
+K+L++ D E N +L+ A HGN
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 129
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 38/167 (22%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
E++ D EG TPL A + V+ L++ + P + K ++ LS+A
Sbjct: 42 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLAC------- 93
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
+ Y +VK+L ++ DW+ PL Y
Sbjct: 94 -----------------------------SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 124
Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLL 278
A +VK + LLE + D +G + LA G V +++
Sbjct: 125 AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGYRSVQQVI 170
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGNV-KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
+H AA G + +A R+ E + + D G TPL AA +G++ V++ L+ D +
Sbjct: 5 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 61
Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
+ S L +A G +IV +L +N D NG TPL A G H V
Sbjct: 62 LLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKM 118
Query: 348 LSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK 392
L + + S N++ L +A R+ + I+ HL LK L+
Sbjct: 119 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 161
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--QLAYKRDCNGETPLHLAAENGKLKV 274
+I+ D PL +AAA G + + + LL+ QL K E+ L LA G +
Sbjct: 26 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYTDI 82
Query: 275 LKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305
+K+L++ D E N +L+ A HGN
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 111
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 38/159 (23%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
E++ D EG TPL A + V+ L++ + P + K ++ LS+A
Sbjct: 24 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLAC------- 75
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
+ Y +VK+L ++ DW+ PL Y
Sbjct: 76 -----------------------------SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 106
Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG 270
A +VK + LLE + D +G + LA G
Sbjct: 107 AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALG 144
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
+D NG TPLHLAA NG L+V+KLL+ D + +D ++ ++ +GN ++ +
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+D G+TPLH A N H V+++L+E + ++ +K +T I+ID
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ-DKFGKTAFDISID 81
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N + D + PLH AA +G++++ + LLE + +D G+
Sbjct: 15 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-NAQDKFGK 73
Query: 261 TPLHLAAENGKLKVLKLL 278
T ++ +NG + ++L
Sbjct: 74 TAFDISIDNGNEDLAEIL 91
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 326 DRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAK 359
D+NG+TPLHLAA H +VV L VN + K
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
+D NG TPLHLAA NG L+V+KLL+ D + +D ++ ++ +GN ++ +
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 118 RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAID 165
+D G+TPLH A N H V+++L+E + + +K +T I+ID
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISID 99
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N + D + PLH AA +G++++ + LLE + +D G+
Sbjct: 33 RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGK 91
Query: 261 TPLHLAAENGKLKVLKLL 278
T ++ +NG + ++L
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
D+NG+TPLHLAA H +VV L ++ A+++ + + I
Sbjct: 54 DKNGSTPLHLAARNGHLEVV-KLLLEAGADVXAQDKFGKTAFDISI 98
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 229 LHYAAASGNV-KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIE 287
+H AA G + +A R+ E + + D G TPL AA +G++ V++ L+ D +
Sbjct: 7 VHQLAAQGEMLYLATRI--EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-Q 63
Query: 288 IRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347
+ S L +A G +IV +L +N D NG TPL A G H V
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKM 120
Query: 348 LSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALK 392
L + + S N++ L +A R+ + I+ HL LK L+
Sbjct: 121 L-LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQ 163
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK--QLAYKRDCNGETPLHLAAENGKLKV 274
+I+ D PL +AAA G + + + LL+ QL K E+ L LA G +
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYTDI 84
Query: 275 LKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305
+K+L++ D E N +L+ A HGN
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 113
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 38/159 (23%)
Query: 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171
E++ D EG TPL A + V+ L++ + P + K ++ LS+A
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLAC------- 77
Query: 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHY 231
+ Y +VK+L ++ DW+ PL Y
Sbjct: 78 -----------------------------SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG 270
A +VK + LLE + D +G + LA G
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALG 146
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
LL PD ++D + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
A H VV L +H + N+ +N + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 198 VVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR 255
V+ N +I ++L G N +L DR +H AA +G + Q LLE + +
Sbjct: 44 VMKLGNPEIARRLLLRGANPDLKDRTG---NAVIHDAARAGFLDTLQTLLEFQADVNIE- 99
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
D G PLHLAA+ G L+V++ L+ + R++ + +A +G +VS +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETP---LHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN----------- 97
Query: 115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
LL PD ++D + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
A H VV L +H + N+ +R+ + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARL 146
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 212 GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK 271
G N +L DR + +H AA +G + Q LLE + + D G PLHLAA+ G
Sbjct: 60 GANPDLKDRTGF---AVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 272 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
L+V++ L+ + R++ + +A +G +VS +
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETP---LHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN----------- 97
Query: 115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
LL PD ++D + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
A H VV L +H + N+ +R+ + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNV--GHRNHKGDTACDLARL 146
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 212 GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK 271
G N +L DR + +H AA +G + Q LLE + + D G PLHLAA+ G
Sbjct: 60 GANPDLKDRTGF---AVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 272 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
L+V++ L+ + R++ + +A +G +VS +
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 21/109 (19%)
Query: 60 IALRLHYSLLRQKN--LMDETP---LHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL 114
IA RL LLR N L D T +H AAR G + ++++ VN
Sbjct: 52 IARRL---LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN----------- 97
Query: 115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA 163
+ D EGN PLH A H RV+ LV+ + + N T +A
Sbjct: 98 --IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 99/260 (38%), Gaps = 44/260 (16%)
Query: 26 IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
+F + G+T LH+AV +++ + +L F A + L +N + +T LH+AA
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLL---GFSA---GHEYLDLQNDLGQTALHLAAI 54
Query: 86 IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
+G + V ++ V L R G+T LH A + +L++
Sbjct: 55 LGEASTVEKLYAAGAGV-----------LVAERG--GHTALHLACRVRAHTCACVLLQPR 101
Query: 146 SVPSSYINKAYQTPLSIAIDARLNDS-ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
S+ A T L+ + D + S A +D P N DE L +NY
Sbjct: 102 P---SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--ENY 156
Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
D PLH A + +M + L + L G TPLH
Sbjct: 157 D-------------------GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
Query: 265 LAAENGKLKVLKLLINKYPD 284
LA E VL+LL+ D
Sbjct: 198 LAVEAQAASVLELLLKAGAD 217
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 69 LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHN 128
L +N TPLH+A ++ + + V + AG L + G TPLH
Sbjct: 151 LEAENYDGHTPLHVA-------VIHKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHL 198
Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI 164
AV Q V+ +L++ + P++ + +TPL A+
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGG-RTPLGSAL 233
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 99/260 (38%), Gaps = 44/260 (16%)
Query: 26 IFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAAR 85
+F + G+T LH+AV +++ + +L F A + L +N + +T LH+AA
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLL---GFSA---GHEYLDLQNDLGQTALHLAAI 54
Query: 86 IGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145
+G + V ++ V L R G+T LH A + +L++
Sbjct: 55 LGEASTVEKLYAAGAGV-----------LVAERG--GHTALHLACRVRAHTCACVLLQPR 101
Query: 146 SVPSSYINKAYQTPLSIAIDARLNDS-ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNY 204
S+ A T L+ + D + S A +D P N DE L +NY
Sbjct: 102 P---SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA--ENY 156
Query: 205 DIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
D PLH A + +M + L + L G TPLH
Sbjct: 157 D-------------------GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197
Query: 265 LAAENGKLKVLKLLINKYPD 284
LA E VL+LL+ D
Sbjct: 198 LAVEAQAASVLELLLKAGAD 217
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 69 LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHN 128
L +N TPLH+A ++ + + V + AG L + G TPLH
Sbjct: 151 LEAENYDGHTPLHVA-------VIHKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHL 198
Query: 129 AVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAI 164
AV Q V+ +L++ + P++ + +TPL A+
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGG-RTPLGSAL 233
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 277 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLA 336
LL PD ++D + +++H AA+ G + + +L E + +N+ D GN PLHLA
Sbjct: 57 LLRGANPD---LKDRTGFAVIHDAARAGFLDTLQTLL---ENQADVNIEDNEGNLPLHLA 110
Query: 337 AMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374
A H VV L +H + N+ +N + + A ++A +
Sbjct: 111 AKEGHLRVVEFLVKHTASNVGHRNH--KGDTACDLARL 146
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 198 VVMRQNYDIMVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR 255
V+ N +I ++L G N +L DR + +H AA +G + Q LLE + +
Sbjct: 44 VMKLGNPEIARRLLLRGANPDLKDRTGFA---VIHDAARAGFLDTLQTLLENQADVNIE- 99
Query: 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312
D G PLHLAA+ G L+V++ L+ + R++ + +A +G +VS +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 104 QAGPLPVLESLFR------MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157
+AG L L++L + D EGN PLH A H RV+ LV+ + + N
Sbjct: 79 RAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138
Query: 158 TPLSIA 163
T +A
Sbjct: 139 TACDLA 144
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 102/245 (41%), Gaps = 16/245 (6%)
Query: 75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFR-------MRDIEGNTPLH 127
M TPL IAA G E ++ N+ V+ L D G T LH
Sbjct: 1 MGLTPLMIAAVRGGGLDTGEDIEN----NEDSTAQVISDLLAQGAELNATMDKTGETSLH 56
Query: 128 NAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTR 187
A + L++ + +S N +TPL A+ A ++ +LN R
Sbjct: 57 LAARFARADAAKRLLDAGADANSQDNTG-RTPLHAAVAADAMGVFQILLRNRATNLNA-R 114
Query: 188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE 247
+ D T L + R + MV+ L T I+ D + LH+AAA N + LL
Sbjct: 115 MHDGTTPL-ILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH 173
Query: 248 SKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307
+ D + ETPL LAA G + K L++ + + EI D+ DR VA++ + +
Sbjct: 174 HANRDAQDDKD-ETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLPRDVASERLHHD 231
Query: 308 IVSFI 312
IV +
Sbjct: 232 IVRLL 236
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A A+ + + Q LL R +G TPL LAA +++ LI D
Sbjct: 85 RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD- 143
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
I DNS ++ LH AA N V+ +L + D TPL LAA
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLMHHANR---DAQDDKDETPLFLAA 192
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303
LL + +L D GET LHLAA + K L++ DA +DN+ R+ LH A
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAA 94
Query: 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ +L++ +N +G TPL LAA
Sbjct: 95 DAMGVFQILLRNRATN--LNARMHDGTTPLILAA 126
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 206 IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHL 265
++ +L EL +D LH AA A+RLL+ A +D G TPLH
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHA 90
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
A + V ++L+ + R + + L +AA+ +V ++ + + IN
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA---DADINAA 147
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNN 366
D +G T LH AA +++ V L H + NR A+++
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHA------NRDAQDD 182
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 14 ENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKN 73
E ++ L + + G T LH A N + + +L +H++ ++
Sbjct: 131 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL---------MHHANRDAQD 181
Query: 74 LMDETPLHIAARIGN 88
DETPL +AAR G+
Sbjct: 182 DKDETPLFLAAREGS 196
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 39/206 (18%)
Query: 69 LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHN 128
+ Q+ M ET LHIAA N +++ P + P+ L+ EG T LH
Sbjct: 30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE---PMTSELY-----EGQTALHI 81
Query: 129 AVTNQHKRVIRILVEKD-SVPSSYINKAY-----------QTPLSIAIDARLNDSACFII 176
AV NQ+ ++R L+ + SV + + + PLS A + +I
Sbjct: 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 177 DKSPESLNTTRLPDEL--TLLHFVVMRQN-------YDIMVKILGTNKELIDRLDWHQRN 227
+ + R D L T+LH ++++ N Y++++ G + + L+ N
Sbjct: 142 EHGAD----IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH--LKSLELVPNN 195
Query: 228 ----PLHYAAASGNVKMAQRLLEESK 249
P A GN+ M Q L+++ K
Sbjct: 196 QGLTPFKLAGVEGNIVMFQHLMQKRK 221
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKY 282
W +PL AA +V+ +LL+ ++R GET LH+AA L+ +L+
Sbjct: 3 W--ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 283 PDAIEIRDNSD----RSILHVAAKHGNWNIVSFIL 313
P+ + S+ ++ LH+A + N N+V +L
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 23/101 (22%)
Query: 34 GNTVLHMAVRFRNQQVIREILRQQNFIALR-----LHYSLLRQKNLM--DETPLHIAARI 86
G T LH+AV +N ++R +L + ++ R HY R NL+ E PL AA +
Sbjct: 75 GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY---RPHNLIYYGEHPLSFAACV 131
Query: 87 GNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLH 127
G+ IV ++++ + R +D GNT LH
Sbjct: 132 GSEEIVRLLIEHGADI-------------RAQDSLGNTVLH 159
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 260 ETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-SPEM 318
E+PL LAA+ ++ L L+ + R + LH+AA + N +++ +PE+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 319 --ENLINLVDRNGNTPLHLAAMGLHSDVV-FTLSRHKSVNIRAKN 360
E + + + G T LH+A + + ++V L+R SV+ RA
Sbjct: 64 VFEPMTSEL-YEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 60/259 (23%)
Query: 67 SLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPL 126
SL Q + ET LH+AAR +++ N ++D G TPL
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPL 95
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D +I
Sbjct: 96 HAAVSADAQGVFQILIR---------NRATD------LDARMHDGTTPLI---------- 130
Query: 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
+ R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 131 -----------LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 179
Query: 247 ES--KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
K + R+ ETPL LAA G + K+L++ + + +I D+ DR +A +
Sbjct: 180 NGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 235
Query: 305 NWNIVSF-----ILKSPEM 318
+ +IV +++SP++
Sbjct: 236 HHDIVRLLDEYNLVRSPQL 254
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303
+ + L + D GET LHLAA + K L+ DA I+DN R+ LH A
Sbjct: 43 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA 101
Query: 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ ++++ + ++ +G TPL LAA
Sbjct: 102 DAQGVFQILIRNRATD--LDARMHDGTTPLILAA 133
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 62 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 121 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 163
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A ++ + Q L+ R +G TPL LAA +L+ LIN + D
Sbjct: 92 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD- 150
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ D+ +S LH AA N + +LK+ +++ N TPL LAA
Sbjct: 151 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---NREETPLFLAA 199
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCN--GETPLHLAAENGKLKVLKLLINKYPDAI 286
L AAA G+V+ +RLL ++L + N G+T L + L+LL K +
Sbjct: 14 LSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASP 69
Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346
++D S S +H AA+ G + + ++ E +N +D G+ P+HLA HS VV
Sbjct: 70 NVQDASGTSPVHDAARTGFLDTLKVLV---EHGADVNALDSTGSLPIHLAIREGHSSVVS 126
Query: 347 TLSRHKSVNIRAKNRSARNNIALEIA 372
L+ ++ +R A LE+A
Sbjct: 127 FLAPESDLH----HRDASGLTPLELA 148
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R + +K+L + ++ LD P+H A G+ + L ES + RD +G
Sbjct: 85 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD--LHHRDASGL 142
Query: 261 TPLHLAAENGKLKVLKLL 278
TPL LA + G ++ +L
Sbjct: 143 TPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCN--GETPLHLAAENGKLKVLKLLINKYPDAI 286
L AAA G+V+ +RLL ++L + N G+T L + L+LL K +
Sbjct: 12 LSGAAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASP 67
Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346
++D S S +H AA+ G + + ++ E +N +D G+ P+HLA HS VV
Sbjct: 68 NVQDASGTSPVHDAARTGFLDTLKVLV---EHGADVNALDSTGSLPIHLAIREGHSSVVS 124
Query: 347 TLSRHKSVNIRAKNRSARNNIALEIA 372
L+ ++ +R A LE+A
Sbjct: 125 FLAPESDLH----HRDASGLTPLELA 146
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R + +K+L + ++ LD P+H A G+ + L ES + RD +G
Sbjct: 83 RTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD--LHHRDASGL 140
Query: 261 TPLHLAAENGKLKVLKLL 278
TPL LA + G ++ +L
Sbjct: 141 TPLELARQRGAQNLMDIL 158
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 60/259 (23%)
Query: 67 SLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPL 126
SL Q + ET LH+AAR +++ N ++D G TPL
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPL 62
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D +I
Sbjct: 63 HAAVSADAQGVFQILIR---------NRATD------LDARMHDGTTPLI---------- 97
Query: 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
+ R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 98 -----------LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 247 ES--KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
K + R+ ETPL LAA G + K+L++ + + +I D+ DR +A +
Sbjct: 147 NGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 202
Query: 305 NWNIVSF-----ILKSPEM 318
+ +IV +++SP++
Sbjct: 203 HHDIVRLLDEYNLVRSPQL 221
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303
+ + L + D GET LHLAA + K L+ DA I+DN R+ LH A
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA 68
Query: 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ ++++ + ++ +G TPL LAA
Sbjct: 69 DAQGVFQILIRNRATD--LDARMHDGTTPLILAA 100
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 29 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 88 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 130
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A ++ + Q L+ R +G TPL LAA +L+ LIN + D
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD- 117
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ D+ +S LH AA N + +LK+ +++ N TPL LAA
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---NREETPLFLAA 166
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 55/248 (22%)
Query: 67 SLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPL 126
SL Q + ET LH+AAR +++ N ++D G TPL
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPL 94
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D +I
Sbjct: 95 HAAVSADAQGVFQILIR---------NRATD------LDARMHDGTTPLI---------- 129
Query: 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
+ R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 130 -----------LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 247 ES--KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304
K + R+ ETPL LAA G + K+L++ + + +I D+ DR +A +
Sbjct: 179 NGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERM 234
Query: 305 NWNIVSFI 312
+ +IV +
Sbjct: 235 HHDIVRLL 242
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303
+ + L + D GET LHLAA + K L+ DA I+DN R+ LH A
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA 100
Query: 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ ++++ + ++ +G TPL LAA
Sbjct: 101 DAQGVFQILIRNRATD--LDARMHDGTTPLILAA 132
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 61 LHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 162
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A ++ + Q L+ R +G TPL LAA +L+ LIN + D
Sbjct: 91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD- 149
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ D+ +S LH AA N + +LK+ +++ N TPL LAA
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---NREETPLFLAA 198
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303
+ + L + D GET LHLAA + K L+ DA I+DN R+ LH A
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHAAVSA 65
Query: 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA-MGLHSDVVFTLSRHKSVN 355
+ +L++ + ++ +G TPL LAA + L + ++ H VN
Sbjct: 66 DAQGVFQILLRNRATD--LDARMHDGTTPLILAARLALEGMLEDLINSHADVN 116
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 51/246 (20%)
Query: 67 SLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPL 126
SL Q + ET LH+AAR +++ ++D G TPL
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAX-------------IQDNMGRTPL 59
Query: 127 HNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT 186
H AV+ + V +IL+ N+A +DAR++D +I
Sbjct: 60 HAAVSADAQGVFQILLR---------NRATD------LDARMHDGTTPLI---------- 94
Query: 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
+ R + M++ L + ++ +D ++ LH+AAA NV A LL+
Sbjct: 95 -----------LAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 143
Query: 247 ESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW 306
+ + ETPL LAA G + K+L++ + + +I D+ DR +A + +
Sbjct: 144 NGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHH 201
Query: 307 NIVSFI 312
+IV +
Sbjct: 202 DIVRLL 207
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A ++ + Q LL R +G TPL LAA +L+ LIN + D
Sbjct: 56 RTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD- 114
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ D+ +S LH AA N + +LK+ +++ N TPL LAA
Sbjct: 115 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---NKEETPLFLAA 163
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Query: 232 AAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN 291
AA + K + +L+++ + D G TPL++A N +++ K LI++ D I ++++
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNS 70
Query: 292 -SDRSILHVAAKHGNWNIVSFILK--SPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345
SD L+ A+ G I++++LK +P++ N +R G L AA H D V
Sbjct: 71 ISDSPYLYAGAQ-GRTEILAYMLKHATPDL----NKHNRYGGNALIPAAEKGHIDNV 122
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
+D +G TPLHLAA G L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 89
Query: 315 SP 316
+
Sbjct: 90 AA 91
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGE 260
R D V+IL N ++ D PLH AA G++++ + LL+ + +D G+
Sbjct: 11 RAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGK 69
Query: 261 TPLHLAAENGKLKVLKLL 278
T ++ +NG + ++L
Sbjct: 70 TAFDISIDNGNEDLAEIL 87
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
+N D++G TPLHLAA H ++V L + ++ A+++ + + I
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISI 76
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 297 LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNI 356
LH AAK GN +S++ + + +N +D+ G+T L+ A G H D+V L ++ +
Sbjct: 77 LHEAAKRGN---LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 357 RAKNR 361
+N+
Sbjct: 134 NQQNK 138
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
NPLH AA GN+ + L+ ++ D G T L+ A G +++ L + +
Sbjct: 75 NPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 287 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 324
++ + LH AA G +IV +L +L N+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 195 LHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK 254
LH R N + + L N+ ++ LD L++A G+ + + L + +
Sbjct: 77 LHEAAKRGNLSWLRECL-DNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQ 135
Query: 255 RDCNGETPLHLAAENGKLKVLKLLINK 281
++ G+T LH AA G +++LL+ K
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAK 162
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE----LTLLHFVVMRQNYDI 206
Y + +TPL +A + ++ IDK E N +L D+ T L + V I
Sbjct: 30 YRDSYNRTPLMVACMLGMENA----IDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGI 83
Query: 207 MVKIL--GTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLH 264
K+L G+N ++ D+ + PL ++ G +M+ LLE + R+ GETPL
Sbjct: 84 AEKLLSKGSN---VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLI 139
Query: 265 LAAENGKLKVLKLLINKYPDAIEIRD 290
+A++ G+ +++K L+ D I RD
Sbjct: 140 VASKYGRSEIVKKLLELGAD-ISARD 164
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 122/318 (38%), Gaps = 40/318 (12%)
Query: 5 LLEVLRNGDENKIKQL-ALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALR 63
L++ ++N D + ++QL N+ GG T LH AV+ + ++ +LR
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA----- 83
Query: 64 LHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGN 123
+LR+KN TP +AA G+ ++ + VN+ D G
Sbjct: 84 --DPVLRKKN--GATPFILAAIAGSVKLLKLFLSKGADVNEC-------------DFYGF 126
Query: 124 TPLHNAVTNQHKRVIRILVE---------KDSVPSSYINKAYQTPLSIAIDARLNDSACF 174
T A + ++ L + K + K T L A + +
Sbjct: 127 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 186
Query: 175 IIDKSPESLNTTRLPDELTLLHFVVMRQNYDI--MVKILGTNKELIDRLDWHQRNPLHYA 232
++D+ +N L+H ++ + D+ + +L + ++ + PL A
Sbjct: 187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 246
Query: 233 AASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA------I 286
++ + QRLLE+ D +G+T L LA E K+ +LL + +
Sbjct: 247 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLVM 306
Query: 287 EIRDNSDRSILHVAAKHG 304
R N D S++ V HG
Sbjct: 307 TARRNYDHSLVKVLLSHG 324
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 237 NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI 296
+V + Q+LLE + ++ + G TPLH A + + +++LL+ D + +R + +
Sbjct: 37 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATP 95
Query: 297 LHVAAKHGNWNIVS-FILKSPEMENLINLVDRNGNTPLHLAAM-GLHSDVVFTLSRHKSV 354
+AA G+ ++ F+ K + +N D G T AA+ G + F R +V
Sbjct: 96 FILAAIAGSVKLLKLFLSKGAD----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 151
Query: 355 NIRAKNR 361
N+R K +
Sbjct: 152 NLRRKTK 158
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHGN 305
G + LH+A E L+ +KLL+ D + +R L +AA
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
W++V+++L++P + D GNT LH M
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 38/195 (19%)
Query: 103 NQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS-----VPSSYINKAYQ 157
+ P P++ + +G++ LH A+ + + +++LVE + + K
Sbjct: 71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQG 130
Query: 158 T-------PLSIAIDARLNDSACFIIDK--SPESLNTTRLPDEL--TLLHFVVMRQNYDI 206
T PLS+A + D ++++ P SL T D L T+LH +VM
Sbjct: 131 TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT---DSLGNTVLHALVM------ 181
Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLA 266
+ N L H + G ++M RL + QL + G TPL LA
Sbjct: 182 ----IADNSPENSALVIHMYD--------GLLQMGARLCP-TVQLEEISNHQGLTPLKLA 228
Query: 267 AENGKLKVLKLLINK 281
A+ GK+++ + ++ +
Sbjct: 229 AKEGKIEIFRHILQR 243
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHGN 305
G + LH+A E L+ +KLL+ D + +R L +AA
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAM 338
W++V+++L++P + D GNT LH M
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVM 194
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 38/195 (19%)
Query: 103 NQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS-----VPSSYINKAYQ 157
+ P P++ + +G++ LH A+ + + +++LVE + + K
Sbjct: 84 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQG 143
Query: 158 T-------PLSIAIDARLNDSACFIIDK--SPESLNTTRLPDEL--TLLHFVVMRQNYDI 206
T PLS+A + D ++++ P SL T D L T+LH +VM
Sbjct: 144 TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT---DSLGNTVLHALVM------ 194
Query: 207 MVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLA 266
+ N L H + G ++M RL + QL + G TPL LA
Sbjct: 195 ----IADNSPENSALVIHMYD--------GLLQMGARLCP-TVQLEEISNHQGLTPLKLA 241
Query: 267 AENGKLKVLKLLINK 281
A+ GK+++ + ++ +
Sbjct: 242 AKEGKIEIFRHILQR 256
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 237 NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI 296
+V + Q+LLE + ++ + G TPLH A + + +++LL+ D + + N
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 297 LHVAAKHGNWNIVS-FILKSPEMENLINLVDRNGNTPLHLAAM-GLHSDVVFTLSRHKSV 354
L +AA G+ ++ F+ K + +N D G T AA+ G + F R +V
Sbjct: 77 L-LAAIAGSVKLLKLFLSKGAD----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 355 NIRAKNR 361
N+R K +
Sbjct: 132 NLRRKTK 138
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 218 IDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDC---------NGETPLHLAAE 268
++ D++ AA G VK + L + + +R G T L AAE
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 269 NGKLKVLKLLINKYPDAIEIRDNSDR-SILHVAAKHGNWNIVSFILKSPEMENLINLVDR 327
G ++VLK+L+++ + DN R +++H + ++ + + +N+
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 328 NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEI 371
G TPL LA H +V L + + I + + + L +
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 112/289 (38%), Gaps = 34/289 (11%)
Query: 5 LLEVLRNGDENKIKQL-ALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALR 63
L++ ++N D + ++QL N+ GG T LH AV+ + ++ +LR
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA----- 63
Query: 64 LHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGN 123
+LR+KN TP +AA G+ ++ + VN+ D G
Sbjct: 64 --DPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGADVNEC-------------DFYGF 106
Query: 124 TPLHNAVTNQHKRVIRILVE---------KDSVPSSYINKAYQTPLSIAIDARLNDSACF 174
T A + ++ L + K + K T L A + +
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Query: 175 IIDKSPESLNTTRLPDELTLLHFVVMRQNYDI--MVKILGTNKELIDRLDWHQRNPLHYA 232
++D+ +N L+H ++ + D+ + +L + ++ + PL A
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226
Query: 233 AASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK 281
++ + QRLLE+ D +G+T L LA E K+ +LL +
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEI 288
LH AAA A+RLLE S A +D G TPLH A V ++LI ++
Sbjct: 61 LHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 289 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLH 334
R + + L +AA+ ++ ++ S +N VD G + LH
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 162
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 244 LLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303
+ + L + D G T LHLAA + K L+ DA I+DN R+ LH A
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA 100
Query: 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ ++++ + ++ +G TPL LAA
Sbjct: 101 DAQGVFQILIRNRATD--LDARMHDGTTPLILAA 132
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSA 172
SL D G T LH A + L+E S ++ + +TPL A+ A
Sbjct: 48 SLHNQTDRTGATALHLAAAYSRSDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVF 106
Query: 173 CFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYA 232
+I L+ R+ D T L + R + M++ L + ++ +D ++ LH+A
Sbjct: 107 QILIRNRATDLDA-RMHDGTTPL-ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 233 AASGNVKMAQRLLEES--KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD 290
AA NV A LL+ K + R+ ETPL LAA G + K+L++ + + +I D
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITD 220
Query: 291 NSDRSILHVAAKHGNWNIVSFI 312
+ DR +A + + +IV +
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLL 242
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA 285
R PLH A ++ + Q L+ R +G TPL LAA +L+ LIN + D
Sbjct: 91 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD- 149
Query: 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337
+ D+ +S LH AA N + +LK+ +++ N TPL LAA
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---NREETPLFLAA 198
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 259 GETPLHLAAENGKLKVLKLLI----NKYPDAIEIRDNSDRSI--------LHVAAKHGNW 306
G + LH+A E L+ +KLL+ N + A + L +AA W
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 307 NIVSFILKSPEMENLINLVDRNGNTPLH 334
++VS++L++P + D GNT LH
Sbjct: 155 DVVSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 52/228 (22%)
Query: 57 QNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFR 116
++F +RL + L + D +P+H AA G++ + ++ AVN
Sbjct: 40 RDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN------------- 86
Query: 117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII 176
+ + +PLH A H ++IL+ K + + + TPL +AC +
Sbjct: 87 IITADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLF---------NAC--V 134
Query: 177 DKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASG 236
S + +N L L H ++ D+ +P+H AA G
Sbjct: 135 SGSWDCVN-------LLLQHGASVQPESDLA-------------------SPIHEAARRG 168
Query: 237 NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
+V+ L+ + +K G TPL+LA EN + +K L+ D
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGAD 215
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
+ D H + +YA A NV++ LL A K E PLH AA K++K+L+
Sbjct: 26 KADVHGHSASYYAIADNNVRLVCTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILL 82
Query: 280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314
D + D + + L+ A GN V +K
Sbjct: 83 FSGLDDSQFDDKGNTA-LYYAVDSGNXQTVKLFVK 116
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
N + + L N +++ D R PLH+A G+ +A L+ L RD G P
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDP 304
Query: 263 LHLAAENGKLKVLKLL 278
L +A E ++ LL
Sbjct: 305 LTIAMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
N + + L N +++ D R PLH+A G+ +A L+ L RD G P
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDP 304
Query: 263 LHLAAENGKLKVLKLL 278
L +A E ++ LL
Sbjct: 305 LTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 203 NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETP 262
N + + L N +++ D R PLH+A G+ +A L+ L RD G P
Sbjct: 246 NSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDP 304
Query: 263 LHLAAENGKLKVLKLL 278
L +A E ++ LL
Sbjct: 305 LTIAMETANADIVTLL 320
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 21/137 (15%)
Query: 72 KNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRM--RDIEGNTPLHNA 129
K+ DETPL A NR + VP+ +S R+ + +GN+ LH A
Sbjct: 169 KDKADETPLXRAXEFRNREALDLXXDTVPS----------KSSLRLDYANKQGNSHLHWA 218
Query: 130 VTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDAR--------LNDSACFIIDKSPE 181
+ + V VE + + + + PL +++ A L + F+I P
Sbjct: 219 ILINWEDVAXRFVEX-GIDVNXEDNEHTVPLYLSVRAAXVLLTKELLQKTDVFLIQACPY 277
Query: 182 SLNTTRLPDELTLLHFV 198
TT LPD + L FV
Sbjct: 278 HNGTTVLPDRVVWLDFV 294
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 223 WHQRNPLHYAAASGNVKMAQRLLEESKQL--------------------AYKRDCNGETP 262
WH + P+H A + + L+E +K+ ++ + C G+T
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTA 141
Query: 263 LHLAAENGK--LKVLKLLI--NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PE 317
LH G L+ +K+L+ P A +D +D + L A + N + + P
Sbjct: 142 LHWCVGLGPEYLEXIKILVQLGASPTA---KDKADETPLXRAXEFRNREALDLXXDTVPS 198
Query: 318 MENL-INLVDRNGNTPLHLAAM 338
+L ++ ++ GN+ LH A +
Sbjct: 199 KSSLRLDYANKQGNSHLHWAIL 220
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 263 LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI 322
+H+AA G+ ++ LI I++ + LH+A K G + ++ E+ +L
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW 82
Query: 323 NLVDRNGNTPLHLAAMGLHSDVVFTL 348
+ G P+HLA +D+V L
Sbjct: 83 H-----GQKPIHLAVXANKTDLVVAL 103
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
R PLHYAA G +++ + LL + + D + TPL A G + +KLL++K D
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
G PLH AA+ G+L++L+ L+ K D I D + L A G+ + V +L
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLL 93
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 54/229 (23%)
Query: 74 LMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQ 133
+ D +P+H AA G++ + ++ AVN + + +PLH A
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVN-------------IITADHVSPLHEACLGG 47
Query: 134 HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT 193
H ++IL+ K + + + TPL +AC + S + +N L
Sbjct: 48 HLSCVKILL-KHGAQVNGVTADWHTPLF---------NAC--VSGSWDCVN-------LL 88
Query: 194 LLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAY 253
L H ++ D+ +P+H AA G+V+ L+ + +
Sbjct: 89 LQHGASVQPESDLA-------------------SPIHEAARRGHVECVNSLIAYGGNIDH 129
Query: 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302
K G TPL+LA EN + +K L+ D + + S LH A+
Sbjct: 130 KISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQD--SPLHAVAR 175
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
+P+H AAR G+ V+ ++ Y ++ ++ + TPL+ A NQ +
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDH-----------KISHL--GTPLYLACENQQRAC 149
Query: 138 IRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIID 177
++ L+E + + K +PL + AC ++D
Sbjct: 150 VKKLLESGADVNQ--GKGQDSPLHAVARTASEELACLLMD 187
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.7 bits (73), Expect = 0.36, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPD 284
R PLHYAA G +++ + LL + + D + TPL A G + +KLL++K D
Sbjct: 36 RKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 259 GETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313
G PLH AA+ G+L++L+ L+ K D I D + L A G+ + V +L
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLL 88
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLV 325
AA G+L+V++ + + D + + + LH A N++IV F++ + +N
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEG-ITALHNAICGANYSIVDFLITAGAN---VNSP 83
Query: 326 DRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354
D +G TPLH AA + + L +H +
Sbjct: 84 DSHGWTPLHCAASCNDTVICMALVQHGAA 112
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
T LH A G+ IV +V++ VN A D +G TPLH A + + +V
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAA-------------DSDGWTPLHCAASCNNVQV 118
Query: 138 IRILVEKDS 146
+ LVE +
Sbjct: 119 CKFLVESGA 127
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
LH A +G+ ++ + L++ + D +G TPLH AA ++V K L+
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 159 PLSIAIDARLNDSACFIIDKSPESLNTTRLPDE--LTLLHFVVMRQNYDIMVKIL---GT 213
PL++ +D+ L + ++ + ++ LP++ +T LH V + +I VK L G
Sbjct: 37 PLALLLDSSL-EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI-VKFLVQFGV 94
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
N D W PLH AA+ NV++ + L+E
Sbjct: 95 NVNAADSDGW---TPLHCAASCNNVQVCKFLVE 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRV 137
T LH A G+ IV +V++ VN A D +G TPLH A + + +V
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAA-------------DSDGWTPLHCAASCNNVQV 118
Query: 138 IRILVEKDS 146
+ LVE +
Sbjct: 119 CKFLVESGA 127
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279
LH A +G+ ++ + L++ + D +G TPLH AA ++V K L+
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLV 123
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 159 PLSIAIDARLNDSACFIIDKSPESLNTTRLPDE--LTLLHFVVMRQNYDIMVKIL---GT 213
PL++ +D+ L + ++ + ++ LP++ +T LH V + +I VK L G
Sbjct: 37 PLALLLDSSL-EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI-VKFLVQFGV 94
Query: 214 NKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246
N D W PLH AA+ NV++ + L+E
Sbjct: 95 NVNAADSDGW---TPLHCAASCNNVQVCKFLVE 124
>pdb|1UXY|A Chain A, Murb Mutant With Ser 229 Replaced By Ala, Complex With
Enolpyruvyl-Udp-N-Acetylglucosamine
Length = 340
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
N YA A G + +L E + + D G ++IN+ I
Sbjct: 29 NAWQYATAEGQPVL---ILGEGSNVLFLEDYRG----------------TVIINRI-KGI 68
Query: 287 EIRDNSDRSILHVAAKHGNWN-IVSFILKS--PEMENLINLVDRNGNTPLH-LAAMGL 340
EI D D LHV A NW+ +V + L+ P +ENL + G++P+ + A G+
Sbjct: 69 EIHDEPDAWYLHVGAGE-NWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGV 125
>pdb|2MBR|A Chain A, Murb Wild Type, Complex With Enolpyruvyl-Udp-N-
Acetylglucosamine
Length = 340
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
N YA A G + +L E + + D G ++IN+ I
Sbjct: 29 NAWQYATAEGQPVL---ILGEGSNVLFLEDYRG----------------TVIINRI-KGI 68
Query: 287 EIRDNSDRSILHVAAKHGNWN-IVSFILKS--PEMENLINLVDRNGNTPLH-LAAMGL 340
EI D D LHV A NW+ +V + L+ P +ENL + G++P+ + A G+
Sbjct: 69 EIHDEPDAWYLHVGAGE-NWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGV 125
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 17/95 (17%)
Query: 259 GETPLHLAAENGKLKVLKLLI-NKY-PDAIEIRDNSDRSILHVAAKHGNWNI--VSFILK 314
GE PL LAA +L ++K L+ N + P I RD+ ++LH + + + F+
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 315 S------------PEMENLINLVDRNGNTPLHLAA 337
P ++ L + +R G TPL LAA
Sbjct: 208 XYNEILILGAKLHPTLK-LEEITNRKGLTPLALAA 241
>pdb|2Q85|A Chain A, Crystal Structure Of E. Coli Mur B Bound To A Naphthyl
Tetronic Acid Inihibitor
pdb|1MBB|A Chain A, Oxidoreductase
pdb|1MBT|A Chain A, Oxidoreductase
Length = 342
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAI 286
N YA A G + +L E + + D G ++IN+ I
Sbjct: 31 NAWQYATAEGQPVL---ILGEGSNVLFLEDYRG----------------TVIINRI-KGI 70
Query: 287 EIRDNSDRSILHVAAKHGNWN-IVSFILKS--PEMENLINLVDRNGNTPLH-LAAMGL 340
EI D D LHV A NW+ +V + L+ P +ENL + G++P+ + A G+
Sbjct: 71 EIHDEPDAWYLHVGAGE-NWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNIGAYGV 127
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 210 ILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES-KQLAYKRDCNGETPLHLAAE 268
+L T+ E++ + AA +G++ + RL E + ++ LAAE
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAE 172
Query: 269 NGKLKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 316
NG L VL L P I+ + + A G+ N+++F+L P
Sbjct: 173 NGHLHVLNRLCELAPTEATAXIQAENYYAFRWAAVGRGHHNVINFLLDCP 222
>pdb|3UJZ|A Chain A, Crystal Structure Of Enterohemorrhagic E. Coli Stce
Length = 869
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 27 FSTSSPGGNTVLHMA--VRFRNQQVI----REILRQQNFIALRLHYSLLRQKNLMDETPL 80
F+TS P + +A V+F Q++ +E Q + +LR L+R D+TP+
Sbjct: 15 FNTSQPINDLQGSLAAEVKFAQSQILPAHPKEGDSQPHLTSLRKSLLLVRPVKADDKTPV 74
Query: 81 HIAARIGNRAIVSEIVKYVPA 101
+ AR N I+ + Y P+
Sbjct: 75 QVEARDDNNKILGTLTLYPPS 95
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 201 RQNYDIMVKILGTNKELIDRLDWHQRNP--LHYAAASGNVKMAQ 242
R + ++ K+L + +DR+DW +P +HY A G++ Q
Sbjct: 89 RVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLSRYQ 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,372,968
Number of Sequences: 62578
Number of extensions: 457261
Number of successful extensions: 2044
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 510
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)