Query 042906
Match_columns 415
No_of_seqs 332 out of 3489
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 18:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 8.1E-65 2.8E-69 462.8 33.1 370 3-413 16-385 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-60 3.8E-65 435.5 39.2 353 2-395 48-400 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-49 8.7E-54 347.9 28.3 302 33-403 24-332 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-48 8.7E-53 341.5 32.3 299 3-360 27-331 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 6.3E-48 2.2E-52 341.7 31.3 319 3-374 26-348 (351)
6 3utm_A Tankyrase-1; tankyrase, 100.0 1.7E-48 5.9E-53 345.3 22.5 323 19-397 9-334 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 7.8E-46 2.7E-50 318.5 31.6 271 3-361 7-284 (285)
8 1wdy_A 2-5A-dependent ribonucl 100.0 1.9E-45 6.5E-50 316.1 25.4 266 121-402 4-283 (285)
9 3d9h_A CDNA FLJ77766, highly s 100.0 1.7E-44 5.7E-49 308.7 21.9 267 31-399 12-281 (285)
10 2fo1_E LIN-12 protein; beta-ba 100.0 9.3E-45 3.2E-49 322.3 18.7 312 2-355 38-371 (373)
11 3d9h_A CDNA FLJ77766, highly s 100.0 2.1E-43 7.1E-48 301.9 23.1 256 2-358 16-282 (285)
12 2fo1_E LIN-12 protein; beta-ba 100.0 2E-44 6.8E-49 320.2 16.0 312 35-398 38-372 (373)
13 3ljn_A Hypothetical protein; a 100.0 1.2E-43 4E-48 315.3 20.1 290 66-400 10-317 (364)
14 1oy3_D Transcription factor in 100.0 1.7E-42 5.8E-47 297.1 23.7 265 27-375 2-268 (282)
15 2xai_A ASB-9, ankyrin repeat a 100.0 1E-42 3.5E-47 294.1 21.1 249 33-346 2-255 (261)
16 3ljn_A Hypothetical protein; a 100.0 1.8E-43 6E-48 314.1 14.9 290 25-361 11-320 (364)
17 2xai_A ASB-9, ankyrin repeat a 100.0 5.9E-42 2E-46 289.4 20.3 240 75-375 2-248 (261)
18 1oy3_D Transcription factor in 100.0 1.7E-41 6E-46 290.8 23.2 232 69-375 2-235 (282)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 3.9E-41 1.3E-45 283.2 22.8 230 26-351 2-245 (253)
20 3b7b_A Euchromatic histone-lys 100.0 2E-40 6.7E-45 276.6 25.0 120 222-346 108-227 (237)
21 1k1a_A B-cell lymphoma 3-encod 100.0 2.8E-41 9.5E-46 282.6 19.0 236 28-351 3-238 (241)
22 1yyh_A HN1;, notch 1, ankyrin 100.0 9.6E-41 3.3E-45 280.8 21.1 218 115-375 3-233 (253)
23 3aji_A 26S proteasome non-ATPa 100.0 3.5E-40 1.2E-44 273.9 23.6 227 32-355 4-230 (231)
24 3aji_A 26S proteasome non-ATPa 100.0 5.4E-40 1.9E-44 272.8 24.3 227 120-397 4-230 (231)
25 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-40 9.3E-45 276.6 22.2 229 116-396 3-240 (241)
26 3b7b_A Euchromatic histone-lys 100.0 1E-39 3.5E-44 272.2 25.2 217 69-375 4-220 (237)
27 2dzn_A Probable 26S proteasome 100.0 1.4E-39 4.7E-44 269.8 21.4 213 76-374 2-217 (228)
28 2dzn_A Probable 26S proteasome 100.0 5.1E-39 1.8E-43 266.4 22.6 224 34-351 2-227 (228)
29 3eu9_A Huntingtin-interacting 100.0 4.9E-39 1.7E-43 268.8 22.1 235 70-401 3-239 (240)
30 4b93_B Ankyrin repeat domain-c 100.0 2.6E-40 9E-45 279.0 13.4 240 117-399 6-246 (269)
31 3kea_A K1L; tropism, ANK repea 100.0 2.5E-39 8.5E-44 276.5 18.6 238 8-317 6-245 (285)
32 1s70_B 130 kDa myosin-binding 100.0 2.1E-39 7E-44 280.2 17.1 274 7-351 4-286 (299)
33 4b93_B Ankyrin repeat domain-c 100.0 9.2E-40 3.1E-44 275.7 12.8 222 29-303 6-228 (269)
34 1s70_B 130 kDa myosin-binding 100.0 2.1E-39 7.1E-44 280.2 13.0 272 40-375 4-275 (299)
35 3kea_A K1L; tropism, ANK repea 100.0 1.8E-38 6.1E-43 271.2 18.4 237 68-374 23-261 (285)
36 3eu9_A Huntingtin-interacting 100.0 2.9E-37 1E-41 258.0 23.6 231 27-316 2-233 (240)
37 2f8y_A Notch homolog 1, transl 100.0 2.1E-37 7.2E-42 255.7 17.7 194 190-398 24-217 (223)
38 2f8y_A Notch homolog 1, transl 100.0 7.4E-37 2.5E-41 252.4 19.8 217 133-357 2-218 (223)
39 1sw6_A Regulatory protein SWI6 100.0 6.6E-39 2.3E-43 279.3 7.9 283 9-374 27-325 (327)
40 2rfa_A Transient receptor pote 100.0 1.1E-35 3.9E-40 246.8 21.9 198 190-401 2-226 (232)
41 1ikn_D Protein (I-kappa-B-alph 100.0 2.1E-37 7.1E-42 257.9 8.9 101 29-147 3-103 (236)
42 3hra_A Ankyrin repeat family p 100.0 2.1E-35 7.3E-40 239.5 18.7 193 189-395 3-201 (201)
43 4gpm_A Engineered protein OR26 100.0 1E-35 3.4E-40 231.8 15.6 158 227-399 6-163 (169)
44 2etb_A Transient receptor pote 100.0 6.9E-35 2.3E-39 245.8 18.0 196 190-400 1-249 (256)
45 2pnn_A Transient receptor pote 100.0 2.7E-35 9.2E-40 250.7 15.1 208 188-409 10-271 (273)
46 2rfa_A Transient receptor pote 100.0 3.6E-34 1.2E-38 237.8 21.2 207 121-361 2-228 (232)
47 1ikn_D Protein (I-kappa-B-alph 100.0 1.5E-35 5E-40 246.7 11.6 216 117-375 3-229 (236)
48 4gpm_A Engineered protein OR26 100.0 2.9E-34 9.9E-39 223.6 17.4 160 2-184 5-164 (169)
49 2pnn_A Transient receptor pote 100.0 4.3E-35 1.5E-39 249.4 13.6 233 66-370 3-272 (273)
50 1sw6_A Regulatory protein SWI6 100.0 3.4E-35 1.2E-39 255.8 9.9 246 11-340 57-327 (327)
51 3hra_A Ankyrin repeat family p 100.0 1.9E-32 6.5E-37 222.1 23.5 193 120-351 3-200 (201)
52 3jxi_A Vanilloid receptor-rela 100.0 1.3E-33 4.4E-38 238.6 14.8 199 189-402 3-255 (260)
53 2etb_A Transient receptor pote 100.0 7.6E-32 2.6E-36 227.1 21.8 220 3-252 4-248 (256)
54 3v30_A DNA-binding protein rfx 100.0 6.5E-32 2.2E-36 213.1 18.6 170 225-408 2-171 (172)
55 2rfm_A Putative ankyrin repeat 100.0 4.1E-32 1.4E-36 218.2 17.5 166 216-396 26-191 (192)
56 3v31_A Ankyrin repeat family A 100.0 2.1E-31 7E-36 209.1 17.9 160 224-398 2-161 (167)
57 4hbd_A KN motif and ankyrin re 100.0 2.6E-32 8.9E-37 231.7 13.4 191 192-395 77-273 (276)
58 3v30_A DNA-binding protein rfx 100.0 2.4E-31 8.1E-36 209.8 16.6 170 191-368 2-171 (172)
59 2aja_A Ankyrin repeat family p 100.0 8.3E-34 2.8E-38 248.7 1.6 306 11-390 44-367 (376)
60 2aja_A Ankyrin repeat family p 100.0 4.1E-33 1.4E-37 244.4 4.3 283 6-351 70-371 (376)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.2E-31 4E-36 209.5 11.7 157 225-397 5-162 (162)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.6E-31 1.2E-35 207.9 14.6 159 222-395 11-169 (169)
63 3jxi_A Vanilloid receptor-rela 100.0 1.7E-31 5.7E-36 225.7 13.5 209 119-358 2-253 (260)
64 3f6q_A Integrin-linked protein 100.0 4.8E-31 1.6E-35 209.4 13.6 163 224-400 4-166 (179)
65 4hbd_A KN motif and ankyrin re 100.0 4.8E-31 1.6E-35 223.9 13.4 192 158-354 78-275 (276)
66 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.5E-30 5.2E-35 203.2 15.2 156 2-180 6-161 (162)
67 3twr_A Tankyrase-2; ankyrin re 100.0 2.3E-31 7.9E-36 208.4 10.3 160 222-396 5-164 (165)
68 2y1l_E Darpin-8.4; hydrolase-i 100.0 9.5E-30 3.3E-34 199.8 18.3 153 3-178 16-168 (169)
69 1awc_B Protein (GA binding pro 100.0 3.3E-30 1.1E-34 198.9 14.6 150 226-391 3-152 (153)
70 1awc_B Protein (GA binding pro 100.0 2.1E-29 7.3E-34 194.4 16.9 150 2-175 3-152 (153)
71 3f6q_A Integrin-linked protein 100.0 6.2E-30 2.1E-34 202.9 13.8 169 189-363 3-171 (179)
72 2rfm_A Putative ankyrin repeat 100.0 1.7E-29 5.7E-34 203.0 16.2 158 188-351 32-189 (192)
73 3v31_A Ankyrin repeat family A 100.0 1.9E-29 6.4E-34 197.9 16.0 161 190-357 2-162 (167)
74 3twr_A Tankyrase-2; ankyrin re 100.0 3.3E-29 1.1E-33 196.1 14.9 159 189-354 6-164 (165)
75 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.3E-28 4.6E-33 190.7 17.4 154 191-351 2-155 (156)
76 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.9E-29 1E-33 194.5 12.6 153 225-394 2-155 (156)
77 1ycs_B 53BP2, P53BP2; ankyrin 100.0 7.3E-30 2.5E-34 212.2 7.4 164 223-402 3-169 (239)
78 3t8k_A Uncharacterized protein 100.0 5.3E-29 1.8E-33 197.2 7.3 164 225-403 6-185 (186)
79 2vge_A RELA-associated inhibit 100.0 4.8E-30 1.6E-34 211.1 0.5 176 188-375 18-198 (229)
80 2vge_A RELA-associated inhibit 100.0 9.6E-31 3.3E-35 215.2 -4.0 143 17-181 1-148 (229)
81 1d9s_A Cyclin-dependent kinase 100.0 2.4E-28 8.3E-33 184.3 9.3 129 254-397 7-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 5.7E-28 1.9E-32 186.9 10.2 147 219-374 6-153 (156)
83 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.6E-28 1.6E-32 201.3 8.7 176 189-374 3-190 (239)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 5.7E-28 2E-32 186.8 7.4 144 254-412 7-151 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 3.4E-27 1.2E-31 178.0 11.3 132 217-355 4-136 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.7E-26 5.8E-31 172.1 12.2 126 258-397 1-126 (126)
87 3t8k_A Uncharacterized protein 99.9 3.6E-27 1.2E-31 186.7 8.3 161 191-360 6-184 (186)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 2.2E-26 7.6E-31 173.5 10.3 126 256-395 11-136 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 2.2E-25 7.6E-30 168.0 14.4 121 3-145 16-136 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.7E-25 1.3E-29 164.7 15.2 126 224-355 1-126 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.9 3.7E-26 1.3E-30 172.6 9.3 131 254-398 5-135 (137)
92 3ehr_A Osteoclast-stimulating 99.9 6.6E-25 2.3E-29 180.4 9.8 136 255-404 69-205 (222)
93 3aaa_C Myotrophin, protein V-1 99.9 1.6E-24 5.3E-29 160.3 10.7 112 256-374 4-115 (123)
94 3c5r_A BARD-1, BRCA1-associate 99.9 8.2E-25 2.8E-29 165.2 7.8 130 25-178 2-131 (137)
95 2b0o_E UPLC1; arfgap, structur 99.9 1.9E-24 6.7E-29 184.8 10.1 137 3-168 153-298 (301)
96 3ui2_A Signal recognition part 99.9 8.3E-24 2.8E-28 175.9 13.6 142 223-397 43-185 (244)
97 3deo_A Signal recognition part 99.9 3E-24 1E-28 170.6 10.3 138 223-393 42-180 (183)
98 3deo_A Signal recognition part 99.9 3.1E-23 1.1E-27 164.7 12.6 137 33-212 43-180 (183)
99 3ehr_A Osteoclast-stimulating 99.9 3.7E-24 1.3E-28 175.9 7.5 139 219-363 67-206 (222)
100 2b0o_E UPLC1; arfgap, structur 99.9 1.4E-23 4.6E-28 179.6 11.2 138 225-375 151-296 (301)
101 3aaa_C Myotrophin, protein V-1 99.9 1.7E-23 5.8E-28 154.7 9.2 114 222-340 4-117 (123)
102 3ui2_A Signal recognition part 99.9 5.4E-23 1.9E-27 171.0 12.5 138 33-213 44-182 (244)
103 1dcq_A PYK2-associated protein 99.9 4.1E-23 1.4E-27 174.6 10.5 123 262-397 133-263 (278)
104 1dcq_A PYK2-associated protein 99.9 2.3E-22 7.7E-27 170.1 14.6 124 227-355 132-263 (278)
105 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-22 7.1E-27 185.0 13.4 134 3-165 134-276 (497)
106 3lvq_E ARF-GAP with SH3 domain 99.9 1.1E-22 3.9E-27 186.8 9.9 136 226-374 133-276 (497)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.9 5.3E-22 1.8E-26 138.5 10.9 93 33-147 1-93 (93)
108 3jue_A Arfgap with coiled-coil 99.9 6.8E-22 2.3E-26 172.6 13.0 146 223-375 197-347 (368)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.2E-21 4E-26 136.8 11.7 93 258-355 1-93 (93)
110 2l6b_A NR1C; ankyrin, consensu 99.9 4.4E-22 1.5E-26 145.2 9.4 109 254-369 4-112 (115)
111 3jue_A Arfgap with coiled-coil 99.9 6.9E-22 2.4E-26 172.6 11.4 128 256-397 196-326 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.8 2.2E-20 7.4E-25 136.1 7.9 109 220-333 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 2.8E-18 9.7E-23 123.5 9.6 90 255-348 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 1.7E-18 5.8E-23 124.6 8.0 93 286-391 17-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 84.1 7.6 0.00026 33.3 9.9 126 34-176 37-165 (351)
116 1gp8_A Protein (scaffolding pr 80.2 0.84 2.9E-05 23.8 1.4 21 2-22 14-34 (40)
117 3k49_A MRNA-binding protein PU 77.9 16 0.00056 31.5 9.9 161 34-211 42-206 (369)
118 3mkq_B Coatomer subunit alpha; 75.2 24 0.00082 26.6 9.1 131 3-179 10-141 (177)
119 3gvo_A Pumilio 2, pumilio homo 73.0 20 0.00067 30.7 9.1 118 8-142 44-165 (351)
120 3zrh_A Ubiquitin thioesterase 57.4 28 0.00096 30.1 6.5 50 7-56 28-91 (454)
121 3k49_A MRNA-binding protein PU 55.7 56 0.0019 28.1 8.7 154 6-176 47-206 (369)
122 3mkq_B Coatomer subunit alpha; 46.9 90 0.0031 23.5 11.2 134 193-355 10-144 (177)
123 3zrh_A Ubiquitin thioesterase 28.0 69 0.0024 27.8 4.4 60 40-99 28-92 (454)
124 4g26_A Pentatricopeptide repea 27.8 74 0.0025 28.8 5.1 89 124-215 110-202 (501)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=8.1e-65 Score=462.80 Aligned_cols=370 Identities=26% Similarity=0.331 Sum_probs=341.2
Q ss_pred hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI 82 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 82 (415)
++||.|+..|++++|++|++.|.+++..+..|.||||+|+..|+.+++++|++. +++++.++..|.||||+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN---------KAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH---------TCCSSCCCTTSCCHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---------CCCCCCCCCCCCCHHHH
Confidence 589999999999999999999999999999999999999999999999999997 67788899999999999
Q ss_pred HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906 83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI 162 (415)
Q Consensus 83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~ 162 (415)
|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.+.+.. ..+..|.||||+
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~ 152 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANPN-------------LATTAGHTPLHIAAREGHVETVLALLEKEASQA-CMTKKGFTPLHV 152 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTT-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCCHHHH
Confidence 999999999999999999877 567889999999999999999999999998775 567889999999
Q ss_pred HHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHH
Q 042906 163 AIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQ 242 (415)
Q Consensus 163 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~ 242 (415)
|+..|+.+++++|++.+.+.... +..|.|||+.|+..++.+++++|+..+.. ++..+..|.||||+|+..++.++++
T Consensus 153 A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 153 AAKYGKVRVAELLLERDAHPNAA--GKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCC--CSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999987765443 36788999999999999999999998876 6777888999999999999999999
Q ss_pred HHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCccccc
Q 042906 243 RLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLI 322 (415)
Q Consensus 243 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~ 322 (415)
+|++.|.+.+ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+..++.+++++|+++|.+ +
T Consensus 230 ~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~ 304 (437)
T 1n11_A 230 SLLQYGGSAN-AESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---V 304 (437)
T ss_dssp HHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---T
T ss_pred HHHHcCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---C
Confidence 9999999887 5788999999999999999999999999998 599999999999999999999999999999887 8
Q ss_pred ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906 323 NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA 402 (415)
Q Consensus 323 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~ 402 (415)
+.++..|+||||+|+..|+.+++++|+++ |++++.+|..| +||||+|++ .++.+++++|+++||+++..+
T Consensus 305 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g--~t~L~~A~~-------~g~~~iv~~Ll~~ga~~~~~~ 374 (437)
T 1n11_A 305 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLG--YSPLHQAAQ-------QGHTDIVTLLLKNGASPNEVS 374 (437)
T ss_dssp TCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHTTCCSCCCC
T ss_pred CCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCC--CCHHHHHHH-------CChHHHHHHHHHCcCCCCCCC
Confidence 99999999999999999999999999986 99999999999 999999999 578899999999999998888
Q ss_pred HHHHHHHhhhh
Q 042906 403 EELQQKRQVSK 413 (415)
Q Consensus 403 ~~~~~~~~~~~ 413 (415)
..+.++.++++
T Consensus 375 ~~g~t~l~~A~ 385 (437)
T 1n11_A 375 SDGTTPLAIAK 385 (437)
T ss_dssp SSSCCHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 77777776654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-60 Score=435.53 Aligned_cols=353 Identities=25% Similarity=0.322 Sum_probs=329.3
Q ss_pred ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
.++||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++. +++++..+..|.||||
T Consensus 48 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------ga~~~~~~~~g~t~L~ 118 (437)
T 1n11_A 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN---------NANPNLATTAGHTPLH 118 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH---------TCCTTCCCTTCCCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC---------CCCCCCCCCCCCcHHH
Confidence 3689999999999999999999999999999999999999999999999999997 5667888999999999
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
+|+..|+.+++++|++++++.. ..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.|||+
T Consensus 119 ~A~~~g~~~~v~~Ll~~~~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~ 184 (437)
T 1n11_A 119 IAAREGHVETVLALLEKEASQA-------------CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLH 184 (437)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCc-------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHH
Confidence 9999999999999999998765 467789999999999999999999999999876 67889999999
Q ss_pred HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHH
Q 042906 162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241 (415)
Q Consensus 162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 241 (415)
+|+..++.+++++|++.+....... ..+.+||+.|+..++.+++++|++.+.. ++..+..|.||||+|+..|+.+++
T Consensus 185 ~A~~~~~~~~v~~Ll~~g~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v 261 (437)
T 1n11_A 185 VAVHHNNLDIVKLLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMV 261 (437)
T ss_dssp HHHHTTCHHHHHHHGGGTCCSCCCC--TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCcC--CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHH
Confidence 9999999999999999887654433 6788999999999999999999998876 788888999999999999999999
Q ss_pred HHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccc
Q 042906 242 QRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 321 (415)
Q Consensus 242 ~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~ 321 (415)
++|++.+++.+ ..+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+..|+.+++++|+++|++
T Consensus 262 ~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad--- 336 (437)
T 1n11_A 262 ALLLSKQANGN-LGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD--- 336 (437)
T ss_dssp HHHHTTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC---
T ss_pred HHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---
Confidence 99999999887 6789999999999999999999999999999 699999999999999999999999999999988
Q ss_pred cccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906 322 INLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY 395 (415)
Q Consensus 322 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G 395 (415)
++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.+| +|||++|.+ .+...++++|....
T Consensus 337 ~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDG--TTPLAIAKR-------LGYISVTDVLKVVT 400 (437)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSS--CCHHHHHHH-------TTCHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCCCC--CCHHHHHHH-------cCcHHHHHHHHhcc
Confidence 999999999999999999999999999986 99999999999 999999999 46777888887653
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-49 Score=347.93 Aligned_cols=302 Identities=20% Similarity=0.196 Sum_probs=246.3
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCC-CCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchh
Q 042906 33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNL-MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVL 111 (415)
Q Consensus 33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 111 (415)
+|.|+||.|++.|++++|++||+. |++++.++. .|+||||+|+..|+.++|++|+++|++++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~---------Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-------- 86 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEG---------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-------- 86 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH---------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred CCChHHHHHHHcCCHHHHHHHHHC---------CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh--------
Confidence 478999999999999999999997 566776665 58999999999999999999999999877
Q ss_pred hhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191 (415)
Q Consensus 112 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 191 (415)
.++..+.++++.++..+...++..++..+.++. ..+..|.||+++|+..++.++++++++.+.+.......
T Consensus 87 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~--- 157 (337)
T 4g8k_A 87 -----LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT--- 157 (337)
T ss_dssp -----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC---
T ss_pred -----hhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc---
Confidence 568899999999999999999999999998876 67889999999999999999999999887665432210
Q ss_pred hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHh-chhhhhccCCCCCCHHHHHHHcC
Q 042906 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEE-SKQLAYKRDCNGETPLHLAAENG 270 (415)
Q Consensus 192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~ 270 (415)
.......+..|.||||+|+..|+.+++++|+++ |++++ ..+..|.|+++.++..+
T Consensus 158 -----------------------~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~ 213 (337)
T 4g8k_A 158 -----------------------KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSS 213 (337)
T ss_dssp -----------------------C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHS
T ss_pred -----------------------ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHc
Confidence 011334466788999999999999999998864 67766 57888889988877654
Q ss_pred C----HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC-CCcccccccCCCCCCcHHHHHHhcCChHHH
Q 042906 271 K----LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPLHLAAMGLHSDVV 345 (415)
Q Consensus 271 ~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~ 345 (415)
. ..++++|+++|++ ++.++..|+||||+|+..++.+++++|++. |.+ ++.+|..|+||||+|+..|+.+++
T Consensus 214 ~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv 289 (337)
T 4g8k_A 214 DDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIA 289 (337)
T ss_dssp CTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred CcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHH
Confidence 3 4578888999888 588888999999999999999999988876 455 888899999999999999999999
Q ss_pred HHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHH
Q 042906 346 FTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAE 403 (415)
Q Consensus 346 ~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~ 403 (415)
++|+++ |+|+| + .|||++|++ .++.++|++|+++||++++..+
T Consensus 290 ~~Ll~~-GAd~n-----~--~~~L~~A~~-------~~~~~iv~~Ll~~GA~~d~~~p 332 (337)
T 4g8k_A 290 ELLCKR-GASTD-----C--GDLVMTARR-------NYDHSLVKVLLSHGAKEDFHPP 332 (337)
T ss_dssp HHHHTT-SCSST-----T--CCHHHHHHH-------TTCHHHHHHHHHTTCCC-----
T ss_pred HHHHHC-CCCCC-----C--CCHHHHHHH-------cCCHHHHHHHHHCcCCCCCCCC
Confidence 999976 88876 3 569999988 4677899999999998877543
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-48 Score=341.54 Aligned_cols=299 Identities=19% Similarity=0.204 Sum_probs=259.2
Q ss_pred hHHHHHHHcCChhHHHHHHhhccccccCCC-CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFSTSSP-GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
..|+.|++.|++++|+.||+.|++++..+. .|+||||+|+..|+.++|++|+++ ++.++.++..+.+|++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~---------ga~~~~~~~~~~~~~~ 97 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH---------GADPVLRKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc---------CCchhhhccCCCchhH
Confidence 579999999999999999999999998875 599999999999999999999998 5677889999999999
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
.++..+...++..++..+++++ ..|..|.||+|+|+..|+.+++++|++.|+++... .....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-------------~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~-~~~~~---- 159 (337)
T 4g8k_A 98 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR-RKTKE---- 159 (337)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CCCC-----
T ss_pred HHHhcccchhhHHhhhccchhh-------------hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchh-hcccc----
Confidence 9999999999999999998876 57889999999999999999999999999877522 11111
Q ss_pred HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC----
Q 042906 162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN---- 237 (415)
Q Consensus 162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~---- 237 (415)
........|.||||.|+..|+.+++++|++..+..++..+..|.|+++.++..+.
T Consensus 160 ---------------------~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~ 218 (337)
T 4g8k_A 160 ---------------------DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 218 (337)
T ss_dssp -------------------------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred ---------------------ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence 1112235678999999999999999999987666688899999999998876554
Q ss_pred HHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC
Q 042906 238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 316 (415)
Q Consensus 238 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 316 (415)
..++++|+++|++++ .++..|.||||+|+..++.+++++|++. +++ ++.+|..|+||||+|++.|+.+++++|+++|
T Consensus 219 ~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 296 (337)
T 4g8k_A 219 EAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRG 296 (337)
T ss_dssp HHHHHHHHHTTCCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 468899999999988 6889999999999999999999999986 455 7999999999999999999999999999999
Q ss_pred CcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccc
Q 042906 317 EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKN 360 (415)
Q Consensus 317 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d 360 (415)
++ +|. .+|||+|+..|+.+++++||++ ||++|...
T Consensus 297 Ad---~n~-----~~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~~ 331 (337)
T 4g8k_A 297 AS---TDC-----GDLVMTARRNYDHSLVKVLLSH-GAKEDFHP 331 (337)
T ss_dssp CS---STT-----CCHHHHHHHTTCHHHHHHHHHT-TCCC----
T ss_pred CC---CCC-----CCHHHHHHHcCCHHHHHHHHHC-cCCCCCCC
Confidence 87 554 4699999999999999999986 99998753
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.3e-48 Score=341.68 Aligned_cols=319 Identities=22% Similarity=0.268 Sum_probs=258.2
Q ss_pred hHHHHHHHcCChhHHHHHHhh-ccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 3 QELLEVLRNGDENKIKQLALR-QNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
++|+.|++.|+.+.+++++.. +.+++..+..|.||||+|+..|+.+++++|++. +++++.++..|.||||
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH---------GADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTCCCHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCccCCCCCcHHH
Confidence 579999999999999999886 688888999999999999999999999999997 5667888999999999
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.+|++
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~ 162 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVN-------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVD 162 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchH
Confidence 9999999999999999998876 567889999999999999999999999998876 67888999999
Q ss_pred HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc---CCH
Q 042906 162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS---GNV 238 (415)
Q Consensus 162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~---~~~ 238 (415)
+++..+..+.+.+... ..++..++..++.+.+..++..... ....+..|.||||+|+.. +..
T Consensus 163 ~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~ 227 (351)
T 3utm_A 163 MAPTPELRERLTYEFK--------------GHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRK 227 (351)
T ss_dssp HCSSHHHHHHHHHHHH--------------HHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred HHhhhhhHHHHHhhhc--------------ccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHH
Confidence 9988777777766552 2567788888888888888877654 334566788899999888 557
Q ss_pred HHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCc
Q 042906 239 KMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 318 (415)
Q Consensus 239 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 318 (415)
+++++|++.|.+++ ..+..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++
T Consensus 228 ~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad 305 (351)
T 3utm_A 228 QVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305 (351)
T ss_dssp HHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 88888888888877 5788888999999999999999999988888 588888888999999998899999999988887
Q ss_pred ccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906 319 ENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374 (415)
Q Consensus 319 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~ 374 (415)
++.+|..|+||+++| ..+++++|.+... ....++ .+++..|++
T Consensus 306 ---~~~~~~~g~tal~~a----~~~~~~~l~~~~~----~~~~~~--~~~l~~A~~ 348 (351)
T 3utm_A 306 ---PSIISLQGFTAAQMG----NEAVQQILSESTP----MRTSDV--DYRLLEASK 348 (351)
T ss_dssp ---TTCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred ---CCCcCCCCCChhhhh----hHHHHHHHHhccc----cccCcc--eeehhhhhc
Confidence 788888889988887 6677888876532 234445 677777776
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.7e-48 Score=345.29 Aligned_cols=323 Identities=19% Similarity=0.181 Sum_probs=283.5
Q ss_pred HHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhh
Q 042906 19 QLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKY 98 (415)
Q Consensus 19 ~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 98 (415)
.++..+.+....+..+.|+||.|+..|+.+.++.|+.. .+.+++..|..|.||||+|+..|+.+++++|+++
T Consensus 9 ~l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~--------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 80 (351)
T 3utm_A 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP--------LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80 (351)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCT--------TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hccCCceeeeeeccccchhHHHHHHcCCHHHHHHHHHh--------cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 44555555666667788999999999999999999987 5788899999999999999999999999999999
Q ss_pred ccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhh
Q 042906 99 VPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178 (415)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 178 (415)
|++++ .+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..++.+++++|++.
T Consensus 81 g~~~~-------------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 146 (351)
T 3utm_A 81 GADVH-------------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLLLSH 146 (351)
T ss_dssp TCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCC-------------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 99877 568899999999999999999999999999876 6788999999999999999999999999
Q ss_pred CCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCC
Q 042906 179 SPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCN 258 (415)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 258 (415)
+.+..... ..+.++++.++..+..+.+.+... .+++..++..+..+.++.++....... ..+..
T Consensus 147 g~~~~~~~--~~g~~~l~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 210 (351)
T 3utm_A 147 GADPTLVN--CHGKSAVDMAPTPELRERLTYEFK-------------GHSLLQAAREADLAKVKKTLALEIINF-KQPQS 210 (351)
T ss_dssp TCCTTCCC--TTSCCHHHHCSSHHHHHHHHHHHH-------------HHHHHHHHHTTCHHHHHHHTTTCCTTC-CCTTT
T ss_pred CCCCcccc--CCCCcchHHHhhhhhHHHHHhhhc-------------ccHHHHHHHhccHHHHHHHHHhhcccc-cCCCC
Confidence 87765443 688899999988777776665543 246788889999999999988776554 46788
Q ss_pred CCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHH
Q 042906 259 GETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL 335 (415)
Q Consensus 259 g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~ 335 (415)
|.||||+|+.. +..+++++|++.+++ ++.++..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+
T Consensus 211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~ 286 (351)
T 3utm_A 211 HETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHR 286 (351)
T ss_dssp CCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred CCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHH
Confidence 99999999999 668999999999999 699999999999999999999999999999988 99999999999999
Q ss_pred HHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906 336 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK 397 (415)
Q Consensus 336 A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~ 397 (415)
|+..|+.+++++|+++ |++++.+|..| +||+++|.+ .++++|.+.+..
T Consensus 287 A~~~~~~~~v~~Ll~~-gad~~~~~~~g--~tal~~a~~-----------~~~~~l~~~~~~ 334 (351)
T 3utm_A 287 AALAGHLQTCRLLLSY-GSDPSIISLQG--FTAAQMGNE-----------AVQQILSESTPM 334 (351)
T ss_dssp HHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHSCH-----------HHHHHHHHC---
T ss_pred HHHcCcHHHHHHHHHc-CCCCCCcCCCC--CChhhhhhH-----------HHHHHHHhcccc
Confidence 9999999999999986 99999999999 999999976 378888877665
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.8e-46 Score=318.48 Aligned_cols=271 Identities=22% Similarity=0.254 Sum_probs=197.3
Q ss_pred hHHHHHHHcCChhHHHHHHhhccccccC-CCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFSTS-SPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
+.|+.|++.|+++++++|++.|.+++.. +..|.||||+|+..|+.+++++|++. +.+++..+..|.||||
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH---------GADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTCCCHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc---------CCCCcccCCCCCCHHH
Confidence 3455666666666666666666555554 44555666666666666666666654 3344455555566666
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|++.|+++.
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------ 132 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADVN-------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN------------ 132 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-------------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc------------
Confidence 6666666666666666555544 345555566666666666666666665555432
Q ss_pred HHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHH
Q 042906 162 IAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA 241 (415)
Q Consensus 162 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~ 241 (415)
..... .......+..|.||||.|+..++.+++
T Consensus 133 ----------------------~~~~~--------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 133 ----------------------LRRKT--------------------------KEDQERLRKGGATALMDAAEKGHVEVL 164 (285)
T ss_dssp ----------------------CCCCC--------------------------CHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred ----------------------ccccc--------------------------HHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence 11100 001233466788999999999999999
Q ss_pred HHHHHh-chhhhhccCCCCCCHHHHHHHcCC----HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhh-C
Q 042906 242 QRLLEE-SKQLAYKRDCNGETPLHLAAENGK----LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-S 315 (415)
Q Consensus 242 ~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~ 315 (415)
++|++. +.+++ ..+..|.||||+|+..++ .+++++|+++|++ ++.++..|.||||+|+..++.+++++|++ .
T Consensus 165 ~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 242 (285)
T 1wdy_A 165 KILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242 (285)
T ss_dssp HHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred HHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcc
Confidence 999988 77776 678899999999999999 9999999999999 59999999999999999999999999999 6
Q ss_pred CCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccc
Q 042906 316 PEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 361 (415)
Q Consensus 316 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~ 361 (415)
|.+ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|.
T Consensus 243 g~~---~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 243 HIE---INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL 284 (285)
T ss_dssp SCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred CCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence 776 899999999999999999999999999986 999998873
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-45 Score=316.06 Aligned_cols=266 Identities=22% Similarity=0.259 Sum_probs=245.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHH
Q 042906 121 EGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVM 200 (415)
Q Consensus 121 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~ 200 (415)
+|.|||+.|+..|+.+++++|++.|+++....+..|.||||+|+..|+.+++++|++.+.+.... +..|.||||.|+.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHH
Confidence 47899999999999999999999999887666888999999999999999999999988765543 3688999999999
Q ss_pred cCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhcc---------CCCCCCHHHHHHHcCC
Q 042906 201 RQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKR---------DCNGETPLHLAAENGK 271 (415)
Q Consensus 201 ~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~---------~~~g~t~L~~A~~~~~ 271 (415)
.|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.|.++.... +..|.||||+|+..++
T Consensus 82 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 160 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160 (285)
T ss_dssp HTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC
Confidence 9999999999998866 78889999999999999999999999999998876321 6789999999999999
Q ss_pred HHHHHHHHHh-CCCccccccCCCCcHHHHHHhcCC----HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906 272 LKVLKLLINK-YPDAIEIRDNSDRSILHVAAKHGN----WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346 (415)
Q Consensus 272 ~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 346 (415)
.+++++|++. +.+ ++..+..|+||||+|+..++ .+++++|++.|++ ++.++..|+||||+|+..|+.++++
T Consensus 161 ~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 161 VEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 9999999998 777 69999999999999999999 9999999999988 8999999999999999999999999
Q ss_pred HHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906 347 TLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSA 402 (415)
Q Consensus 347 ~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~ 402 (415)
+|+++.|++++.+|..| +||||+|++ .++.+++++|+++||++++.+
T Consensus 237 ~Ll~~~g~~~~~~~~~g--~t~l~~A~~-------~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 237 RLLEQEHIEINDTDSDG--KTALLLAVE-------LKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHSSSCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHSSCSCCSS
T ss_pred HHHhccCCCccccCCCC--CcHHHHHHH-------cCcHHHHHHHHHcCCCCCccc
Confidence 99996799999999999 999999999 578899999999999987653
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-44 Score=308.66 Aligned_cols=267 Identities=20% Similarity=0.193 Sum_probs=186.6
Q ss_pred CCCCCCHHHHHHHhCCHHHHHHHHhccchHHH--HHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCc
Q 042906 31 SPGGNTVLHMAVRFRNQQVIREILRQQNFIAL--RLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPL 108 (415)
Q Consensus 31 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 108 (415)
...|.|+||+|+..|+.+.+..++..++.... ......++..+..|+||||+|+..|+.+++++|++.|++++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~----- 86 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN----- 86 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-----
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence 35799999999999998877777665321000 00012356788889999999999999999999999988776
Q ss_pred chhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCC
Q 042906 109 PVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRL 188 (415)
Q Consensus 109 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~ 188 (415)
.+|..|.||||+|+..|+.+++++|++.|+++.
T Consensus 87 --------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--------------------------------------- 119 (285)
T 3d9h_A 87 --------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN--------------------------------------- 119 (285)
T ss_dssp --------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS---------------------------------------
T ss_pred --------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC---------------------------------------
Confidence 568889999999999999999999998886543
Q ss_pred CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268 (415)
Q Consensus 189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 268 (415)
..+..|.||||+|+..++.+++++|++.++++. .+..|.||||+|+.
T Consensus 120 -------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 120 -------------------------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAAR 166 (285)
T ss_dssp -------------------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHH
T ss_pred -------------------------------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Confidence 123346677777777777777777777777665 34458888888888
Q ss_pred cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348 (415)
Q Consensus 269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 348 (415)
.|+.+++++|++.+++ ++.++..|.||||+|+..++.+++++|++.|++ ++ .+..|+||||+|+..++.+++++|
T Consensus 167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-~~~~g~t~L~~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-QGKGQDSPLHAVVRTASEELACLL 241 (285)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence 8888888888888888 588888899999999999999999999988877 56 378888999999999999999999
Q ss_pred hhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHH-HHHHh
Q 042906 349 SRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTA-YAKRA 399 (415)
Q Consensus 349 l~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~-Ga~~~ 399 (415)
+++ |++++.+|.+| +|||++|++. .+++++|+++ ||+..
T Consensus 242 l~~-gad~~~~d~~g--~t~l~~A~~~---------~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 242 MDF-GADTQAKNAEG--KRPVELVPPE---------SPLAQLFLEREGASLP 281 (285)
T ss_dssp HHT-TCCTTCCCTTS--CCGGGGSCTT---------SHHHHHHHHHC-----
T ss_pred HHC-CCCCCCcCCCC--CCHHHHhcCc---------cHHHHHHHHhhccCCC
Confidence 986 89999999999 9999999862 3588899988 88754
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.3e-45 Score=322.28 Aligned_cols=312 Identities=20% Similarity=0.267 Sum_probs=221.5
Q ss_pred ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
.++|+.|+..|+.+.++.++++...+.. -.+++.-+...|+++++++++.. ..+..|.||||
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~--------------~~~~~g~t~L~ 99 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYPN----PQGYGNGNDFLGDFNHTNLQIPT--------------EPEPESPIKLH 99 (373)
T ss_dssp --------------------------------------------------------------------------CCCHHH
T ss_pred ccccccccCCccccchhhhhhhhccccC----ccccCCCCCcccccccccccccc--------------CCCCCCccHHH
Confidence 4678888888999999988887765542 23456777888888888887665 34677999999
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhccc-CCCChHHHHHHHcCCHHHHHHHH--------hCCCCCcccc
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD-IEGNTPLHNAVTNQHKRVIRILV--------EKDSVPSSYI 152 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll--------~~~~~~~~~~ 152 (415)
+|+..+. +++++|+.. +++ ..| ..|.||||+|+..|+.+++++|+ +.|+++. ..
T Consensus 100 ~Aa~~~~-~~~~~L~~~--~~n-------------~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn-~~ 162 (373)
T 2fo1_E 100 TEAAGSY-AITEPITRE--SVN-------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AM 162 (373)
T ss_dssp HHHHSSS-CCCSCCSTT--TTT-------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CC
T ss_pred HHhcCCc-hHHHHhccc--ccc-------------ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCc-CC
Confidence 9998554 777777542 222 445 68999999999999988777776 7888776 67
Q ss_pred cccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcCh--hhhcccccCCCCHHH
Q 042906 153 NKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNK--ELIDRLDWHQRNPLH 230 (415)
Q Consensus 153 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~--~~~~~~~~~~~t~l~ 230 (415)
+..|.||||+|+..|+.+++++|++.+.+.... +..|.||||+|+..|+.+++++|++.+. ..++..+..|.||||
T Consensus 163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~ 240 (373)
T 2fo1_E 163 DCDENTPLMLAVLARRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM 240 (373)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHH
Confidence 889999999999999999999999988766543 3688899999999999999999998873 457888999999999
Q ss_pred HHHhcC---CHHHHHHHHHhchhhhh-------ccCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCccccccCCCCcHHHH
Q 042906 231 YAAASG---NVKMAQRLLEESKQLAY-------KRDCNGETPLHLAAENGKLKVLKLLINKY-PDAIEIRDNSDRSILHV 299 (415)
Q Consensus 231 ~a~~~~---~~~~~~~Ll~~~~~~~~-------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~l~~ 299 (415)
+|+..+ +.+++++|++.|++++. ..+..|.||||+|+..|+.+++++|++++ ++ ++.+|..|+||||+
T Consensus 241 ~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~ 319 (373)
T 2fo1_E 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIML 319 (373)
T ss_dssp HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHH
T ss_pred HHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHH
Confidence 999998 89999999999988763 25678999999999999999999999997 55 79999999999999
Q ss_pred HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906 300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (415)
Q Consensus 300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~ 355 (415)
|+..|+.+++++|+++|++ ++.+|..|+|||++|+..|+.+++++|+++ |++
T Consensus 320 A~~~g~~~iv~~Ll~~gad---~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~ 371 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE 371 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred HHHcCCHHHHHHHHHcCCC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence 9999999999999999988 899999999999999999999999999986 665
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-43 Score=301.86 Aligned_cols=256 Identities=18% Similarity=0.210 Sum_probs=191.2
Q ss_pred ChHHHHHHHcCChhHHHHHHhhc-----------cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhh
Q 042906 2 DQELLEVLRNGDENKIKQLALRQ-----------NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLR 70 (415)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~-----------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 70 (415)
++.||.|+..|+.+.+..++..+ ..++..+..|+||||+|+..|+.+++++|++. +.+++
T Consensus 16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~---------g~~~~ 86 (285)
T 3d9h_A 16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ---------GWAVN 86 (285)
T ss_dssp --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT---------TCCSC
T ss_pred HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC---------CCCCC
Confidence 46799999999998888876653 33567788999999999999999999999998 56788
Q ss_pred cCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc
Q 042906 71 QKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS 150 (415)
Q Consensus 71 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~ 150 (415)
.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|++.|+++..
T Consensus 87 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 153 (285)
T 3d9h_A 87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-------------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP 153 (285)
T ss_dssp EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC
T ss_pred CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-------------CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC
Confidence 899999999999999999999999999999877 5688999999999999999999999998875431
Q ss_pred cccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHH
Q 042906 151 YINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLH 230 (415)
Q Consensus 151 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~ 230 (415)
+ ..|.||||
T Consensus 154 --~---------------------------------------------------------------------~~g~t~L~ 162 (285)
T 3d9h_A 154 --E---------------------------------------------------------------------SDLASPIH 162 (285)
T ss_dssp --S---------------------------------------------------------------------CTTSCHHH
T ss_pred --C---------------------------------------------------------------------CCCCCHHH
Confidence 0 12456777
Q ss_pred HHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHH
Q 042906 231 YAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVS 310 (415)
Q Consensus 231 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 310 (415)
+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|++.|++. + .+..|.||||+|+..++.++++
T Consensus 163 ~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~ 239 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELAC 239 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHH
Confidence 7777777777777777777766 56778888888888888888888888888873 5 3778888888888888888888
Q ss_pred HHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc
Q 042906 311 FILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA 358 (415)
Q Consensus 311 ~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~ 358 (415)
+|+++|++ ++.+|..|+|||++|+ ++.+++++|+++.|+++..
T Consensus 240 ~Ll~~gad---~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 240 LLMDFGAD---TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp HHHHTTCC---TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred HHHHCCCC---CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 88888877 8888888888888888 4568888888876777654
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2e-44 Score=320.19 Aligned_cols=312 Identities=19% Similarity=0.192 Sum_probs=224.5
Q ss_pred CCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhh
Q 042906 35 NTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESL 114 (415)
Q Consensus 35 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 114 (415)
..+|+.|+..|+.+.++.+++.+.. +. ...+++.-+...|+.+++++++...
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~g~~~~~~~~~~~~--------------- 89 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSL---------YP----NPQGYGNGNDFLGDFNHTNLQIPTE--------------- 89 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCCccccchhhhhhhhcc---------cc----CccccCCCCCccccccccccccccC---------------
Confidence 4567777788998888888886321 11 2235566788889999999887653
Q ss_pred hhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHh--------hhCCCCccCC
Q 042906 115 FRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFII--------DKSPESLNTT 186 (415)
Q Consensus 115 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll--------~~~~~~~~~~ 186 (415)
.+..|.||||+|+..+. +++++|+.. ++....+..|.||||+|+..|+.+++++|+ +.+.+...
T Consensus 90 ---~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~-- 161 (373)
T 2fo1_E 90 ---PEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA-- 161 (373)
T ss_dssp -------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC--
T ss_pred ---CCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC--
Confidence 46789999999999654 788888653 333233378999999999999999988887 45555433
Q ss_pred CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhc---hhhhhccCCCCCCHH
Q 042906 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEES---KQLAYKRDCNGETPL 263 (415)
Q Consensus 187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~g~t~L 263 (415)
.+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++++ .+++ ..+..|.|||
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L 239 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTAL 239 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTS-CCCTTSCCHH
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChh-hcCCCCCCHH
Confidence 347899999999999999999999999876 7888999999999999999999999999988 4555 5789999999
Q ss_pred HHHHHcC---CHHHHHHHHHhCCCcccc--------ccCCCCcHHHHHHhcCCHHHHHHHhhCC-CcccccccCCCCCCc
Q 042906 264 HLAAENG---KLKVLKLLINKYPDAIEI--------RDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLVDRNGNT 331 (415)
Q Consensus 264 ~~A~~~~---~~~~v~~Ll~~~~~~~~~--------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~g~t 331 (415)
|+|+..+ +.+++++|+++|++. +. .+..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|+|
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d~~g~T 315 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKT 315 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCS-SCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCC
T ss_pred HHHHHhCCcchHHHHHHHHHCCCCc-ccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---ccCcCCCCCC
Confidence 9999998 899999999999884 54 6778999999999999999999999886 55 8999999999
Q ss_pred HHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906 332 PLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR 398 (415)
Q Consensus 332 ~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~ 398 (415)
|||+|+..|+.+++++|+++ |++++.+|..| +|||++|++ .++.+++++|+++|++.
T Consensus 316 pL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g--~t~l~~A~~-------~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 316 PIMLAAQEGRIEVVMYLIQQ-GASVEAVDATD--HTARQLAQA-------NNHHNIVDIFDRCRPER 372 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSS--CCHHHHHHH-------TTCHHHHHHHHTTC---
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCccCCCCCC--CCHHHHHHH-------cCCHHHHHHHHhcCccc
Confidence 99999999999999999986 99999999999 999999999 58899999999999874
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.2e-43 Score=315.26 Aligned_cols=290 Identities=17% Similarity=0.137 Sum_probs=235.1
Q ss_pred hHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC
Q 042906 66 YSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145 (415)
Q Consensus 66 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 145 (415)
+...+..|..|.||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 76 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-------------IQNRFGCTALHLACKFGCVDTAKYLASVG 76 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHHCCHHHHHHHHHHC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-------------ccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 45566778889999999999999999999999999876 57889999999999999999999999999
Q ss_pred CCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCC
Q 042906 146 SVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ 225 (415)
Q Consensus 146 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~ 225 (415)
++.. ...|.||||+|+..++.+++++|++.+... +..+-......... .......+..+..|
T Consensus 77 ~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g 138 (364)
T 3ljn_A 77 EVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKER--------GQMPESLLNECDER-------EVNEIGSHVKHCKG 138 (364)
T ss_dssp CCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHH--------TCCHHHHHTCCCCC-------CEEEETTEEEEESC
T ss_pred CCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhcccc--------CCCHHHHHhhcchH-------hhhhhccccCCCCC
Confidence 8543 457889999999999999999999762110 00000000000000 00011244477889
Q ss_pred CCHHHHHHhcC--CHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc----cccccCCCCcHHHH
Q 042906 226 RNPLHYAAASG--NVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA----IEIRDNSDRSILHV 299 (415)
Q Consensus 226 ~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~ 299 (415)
.||||+|+..| +.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++++++. ++..+..|+||||+
T Consensus 139 ~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~ 217 (364)
T 3ljn_A 139 QTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW 217 (364)
T ss_dssp CCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred CCHHHHHHHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence 99999999999 9999999999999988 68899999999999999999999999999873 48899999999999
Q ss_pred HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc------------cccccccch
Q 042906 300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA------------KNRSARNNI 367 (415)
Q Consensus 300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~------------~d~~g~~~t 367 (415)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++. .+..| +|
T Consensus 218 A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~--~~ 291 (364)
T 3ljn_A 218 AILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVV--WL 291 (364)
T ss_dssp HHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCC--CC
T ss_pred HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccc--cc
Confidence 9999999999999999988 899999999999999999999999999987 777655 56667 99
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 042906 368 ALEIAEITRADGKEIQKHLTLKALKTAYAKRAL 400 (415)
Q Consensus 368 ~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~ 400 (415)
|++.|+. .+..+.+..|+..|++...
T Consensus 292 ~l~~aa~-------~~~~~~v~~ll~~~~~~~~ 317 (364)
T 3ljn_A 292 DFVPAAA-------DPSKQEVLQLLQEKLDEVV 317 (364)
T ss_dssp TTSCSSC-------CHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhh-------ccCHHHHHHHHHHHHHHHh
Confidence 9999998 4656666677777777433
No 14
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.7e-42 Score=297.11 Aligned_cols=265 Identities=20% Similarity=0.218 Sum_probs=188.0
Q ss_pred cccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCC
Q 042906 27 FSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAG 106 (415)
Q Consensus 27 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 106 (415)
++..|..|+||||+|+..|+.+++++|++.++. ...++.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--- 72 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG------HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL--- 72 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT------SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS---
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC------cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---
Confidence 467888999999999999999999999997432 12378899999999999999999999999999999877
Q ss_pred CcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCC
Q 042906 107 PLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT 186 (415)
Q Consensus 107 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~ 186 (415)
.++..|.||||+|+..++.+++++|++.++........ +. +...
T Consensus 73 ----------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~----------------~~~~------- 116 (282)
T 1oy3_D 73 ----------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TY----------------LTQS------- 116 (282)
T ss_dssp ----------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred ----------CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH---HH----------------hhcc-------
Confidence 56889999999999999999999999998764311000 00 0000
Q ss_pred CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC-HHHHHHHHHhchhhhhccCCCCCCHHHH
Q 042906 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN-VKMAQRLLEESKQLAYKRDCNGETPLHL 265 (415)
Q Consensus 187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~L~~ 265 (415)
.......+.++++.+...+. ......+...+.+++ ..+..|.||||+
T Consensus 117 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~t~L~~ 164 (282)
T 1oy3_D 117 -------------------------------QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLE-AENYDGHTPLHV 164 (282)
T ss_dssp ----------------------------------------------------------CCCGGGGTT-CCCTTSCCHHHH
T ss_pred -------------------------------cccCcchhcchhhhccccccchhhhhhhhhhhhcCC-CcCCCCcCHHHH
Confidence 00000112233333333222 222333334444554 578889999999
Q ss_pred HHHcCCHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHH
Q 042906 266 AAENGKLKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344 (415)
Q Consensus 266 A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~ 344 (415)
|+..|+.+++++|+++|++ ++..+. .|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+.++
T Consensus 165 A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~ 240 (282)
T 1oy3_D 165 AVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPIL 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHH
Confidence 9999999999999999988 477775 499999999999999999999999887 89999999999999999999999
Q ss_pred HHHHhhccCcCccccccccccchhHHHHHHh
Q 042906 345 VFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 345 ~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
+++|+++ |++++.+|.+| +|||++|...
T Consensus 241 v~~Ll~~-ga~~~~~~~~g--~tpl~~a~~~ 268 (282)
T 1oy3_D 241 ARLLRAH-GAPEPEDGGDK--LSPCSSSGSD 268 (282)
T ss_dssp HHHHHHT-TCCCCCCC---------------
T ss_pred HHHHHHc-CCCcCcCCCcc--cccccccCCc
Confidence 9999986 99999999999 9999999885
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=294.09 Aligned_cols=249 Identities=17% Similarity=0.200 Sum_probs=144.1
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906 33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE 112 (415)
Q Consensus 33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (415)
+|+||||+|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--------- 63 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ---------GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN--------- 63 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT---------TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC---------CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------
Confidence 578899999999999999999887 56677888888899999999899999999998888766
Q ss_pred hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcch
Q 042906 113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL 192 (415)
Q Consensus 113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 192 (415)
.+|..|.||||+|+..|+.+++++|++.|+++.. +..|.||+|+|+
T Consensus 64 ----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~---------------------------- 109 (261)
T 2xai_A 64 ----GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAA---------------------------- 109 (261)
T ss_dssp ----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTCCHHHHHH----------------------------
T ss_pred ----CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCHHHHHH----------------------------
Confidence 4677888888888888888888888888876531 112223222222
Q ss_pred hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH
Q 042906 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272 (415)
Q Consensus 193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 272 (415)
..|+.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|+++|++++ .+..|.||||+|+..++.
T Consensus 110 -------~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~ 179 (261)
T 2xai_A 110 -------RRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASE 179 (261)
T ss_dssp -------HTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCH
T ss_pred -------HcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCH
Confidence 22222223333322222 33334444455555555555555555555554444 244445555555555555
Q ss_pred HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCccc-----ccccCCCCCCcHHHHHHhcCChHHHH
Q 042906 273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMEN-----LINLVDRNGNTPLHLAAMGLHSDVVF 346 (415)
Q Consensus 273 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-----~~~~~~~~g~t~l~~A~~~~~~~~~~ 346 (415)
+++++|+++|++ ++.+|..|+||+|+|+..+ +++++|++.+.... .++.++..|+||+|+|.+....+.++
T Consensus 180 ~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~ 255 (261)
T 2xai_A 180 ELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255 (261)
T ss_dssp HHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHH
T ss_pred HHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHH
Confidence 555555555554 3455555555555554332 24444444433211 13344444444444444444444333
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.8e-43 Score=314.11 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=233.3
Q ss_pred cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhcccccc
Q 042906 25 NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQ 104 (415)
Q Consensus 25 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 104 (415)
.+.+..|..|.||||+|+..|+.+++++|++. +++++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~---------g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~- 80 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIET---------GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS- 80 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC-
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc-
Confidence 34556778899999999999999999999998 56788899999999999999999999999999999654
Q ss_pred CCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhC----CCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCC
Q 042906 105 AGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK----DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSP 180 (415)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~ 180 (415)
+..|.||||+|+..|+.+++++|++. +.++...... .....+ .
T Consensus 81 --------------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-----------~~~~~~--------~ 127 (364)
T 3ljn_A 81 --------------LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNE-----------CDEREV--------N 127 (364)
T ss_dssp --------------CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTC-----------CCCCCE--------E
T ss_pred --------------ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhh-----------cchHhh--------h
Confidence 34799999999999999999999998 5443210000 000000 0
Q ss_pred CCccCCCCCcchhHHHHHHHcC--CHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchh-----hhh
Q 042906 181 ESLNTTRLPDELTLLHFVVMRQ--NYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQ-----LAY 253 (415)
Q Consensus 181 ~~~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~ 253 (415)
.......+..|.||||+|+..| +.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++ ++
T Consensus 128 ~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~- 205 (364)
T 3ljn_A 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD- 205 (364)
T ss_dssp EETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-
T ss_pred hhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-
Confidence 0001112356778888888888 88888888888755 788889999999999999999999999999988 66
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccc---------ccc
Q 042906 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL---------INL 324 (415)
Q Consensus 254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~---------~~~ 324 (415)
..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++... ...
T Consensus 206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 284 (364)
T 3ljn_A 206 YANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284 (364)
T ss_dssp CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccc
Confidence 6788999999999999999999999999999 599999999999999999999999999999866211 122
Q ss_pred CCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccc
Q 042906 325 VDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 361 (415)
Q Consensus 325 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~ 361 (415)
.+..++||++.|+..++.+.+..|+.. +++....+.
T Consensus 285 ~~~~~~~~l~~aa~~~~~~~v~~ll~~-~~~~~~~~~ 320 (364)
T 3ljn_A 285 PDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEVVRSL 320 (364)
T ss_dssp GGGCCCCTTSCSSCCHHHHHHHHHHHH-HHHHHHTC-
T ss_pred ccccccccchhhhhccCHHHHHHHHHH-HHHHHhhcc
Confidence 567889999999999988888888876 555544433
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.9e-42 Score=289.43 Aligned_cols=240 Identities=20% Similarity=0.252 Sum_probs=208.8
Q ss_pred CCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccc
Q 042906 75 MDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINK 154 (415)
Q Consensus 75 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 154 (415)
.|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+++. ..+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~ 67 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-------------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTA 67 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCC
Confidence 58999999999999999999999998877 568899999999999999999999999998775 5677
Q ss_pred cCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHh
Q 042906 155 AYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA 234 (415)
Q Consensus 155 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~ 234 (415)
.|.||||+|+..++.+++++|++.+.+. + .+..|.||||+|+.
T Consensus 68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------------~-~~~~g~t~L~~A~~ 110 (261)
T 2xai_A 68 DWHTPLFNACVSGSWDCVNLLLQHGASV------------------------------------Q-PESDLASPIHEAAR 110 (261)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCS------------------------------------S-CSCTTCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC------------------------------------C-CCCCCCCHHHHHHH
Confidence 7778888887777777777777654332 1 12347899999999
Q ss_pred cCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhh
Q 042906 235 SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314 (415)
Q Consensus 235 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 314 (415)
.|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++. +. +..|.||||+|+..++.+++++|++
T Consensus 111 ~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~ 187 (261)
T 2xai_A 111 RGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGADV-NQ-GKGQDSPLHAVARTASEELACLLMD 187 (261)
T ss_dssp TTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT-TC-CBTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC-CC-CCCCCChHHHHHHcCCHHHHHHHHH
Confidence 999999999999999988 68899999999999999999999999999994 64 8899999999999999999999999
Q ss_pred CCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccC-------cCccccccccccchhHHHHHHh
Q 042906 315 SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKS-------VNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 315 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g-------~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
.|++ ++.+|..|+||||+|+.. .+++++|+++.+ ++++.+|..| +||+|+|.+.
T Consensus 188 ~gad---~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g--~t~l~~~~~~ 248 (261)
T 2xai_A 188 FGAD---TQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFG--IQQHHKITKL 248 (261)
T ss_dssp TTCC---TTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSC--TTCGGGGGGS
T ss_pred cCCC---CCCcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHhc--hhccccCccc
Confidence 9988 899999999999999954 468999998633 3677899999 9999999985
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.7e-41 Score=290.82 Aligned_cols=232 Identities=17% Similarity=0.194 Sum_probs=170.7
Q ss_pred hhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 042906 69 LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148 (415)
Q Consensus 69 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 148 (415)
++.+|..|+||||+|+..|+.+++++|+++|++... ++.++..|.||||+|+..|+.+++++|++.|+++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 71 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY----------LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV 71 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG----------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 456889999999999999999999999999987331 3367889999999999999999999999999987
Q ss_pred cccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCH
Q 042906 149 SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP 228 (415)
Q Consensus 149 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~ 228 (415)
. ..+..|.||||+|+..++.+++++|++.+....... ..+.
T Consensus 72 ~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--------------------------------------~~~~ 112 (282)
T 1oy3_D 72 L-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA--------------------------------------SDTY 112 (282)
T ss_dssp S-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------
T ss_pred C-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhh--------------------------------------HHHH
Confidence 6 667788888888888888888888876654321110 0000
Q ss_pred HHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHH-HHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH
Q 042906 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLK-VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN 307 (415)
Q Consensus 229 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~-~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~ 307 (415)
+..... .....+.++++.++..+... ....+...+.+ ++..+..|.||||+|+..|+.+
T Consensus 113 ----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~A~~~g~~~ 172 (282)
T 1oy3_D 113 ----------------LTQSQD---CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ-LEAENYDGHTPLHVAVIHKDAE 172 (282)
T ss_dssp --------------------------------------------------CCCGGGG-TTCCCTTSCCHHHHHHHTTCHH
T ss_pred ----------------hhcccc---cCcchhcchhhhccccccchhhhhhhhhhhhc-CCCcCCCCcCHHHHHHHcCCHH
Confidence 000111 12234556666666555433 33444444555 6889999999999999999999
Q ss_pred HHHHHhhCCCcccccccCCC-CCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906 308 IVSFILKSPEMENLINLVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 308 ~~~~Ll~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
++++|+++|++ ++.++. .|+||||+|+..|+.+++++|+++ |++++.+|..| +||||+|++.
T Consensus 173 ~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g--~tpL~~A~~~ 235 (282)
T 1oy3_D 173 MVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGG--RTPLGSALLR 235 (282)
T ss_dssp HHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHTS
T ss_pred HHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCcccccCC--CCHHHHHHHc
Confidence 99999999988 888885 499999999999999999999986 99999999999 9999999974
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.9e-41 Score=283.18 Aligned_cols=230 Identities=24% Similarity=0.339 Sum_probs=132.4
Q ss_pred ccccCCCCCCCHHHHHHHhC-------------CHHHHHHHHhccchHHHHHHhHhh-hcCCCCCCChHHHHHHhCcHHH
Q 042906 26 IFSTSSPGGNTVLHMAVRFR-------------NQQVIREILRQQNFIALRLHYSLL-RQKNLMDETPLHIAARIGNRAI 91 (415)
Q Consensus 26 ~~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~ 91 (415)
+++.+|.+|+||||+|+..| +.+++++|++.+ ..+ +..|..|+||||+|+..|+.++
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g---------~~~~~~~d~~g~t~L~~A~~~g~~~~ 72 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG---------ASLHNQTDRTGETALHLAARYSRSDA 72 (253)
T ss_dssp -----------------------------------------------------------CCCTTSCCHHHHHHHTTCHHH
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc---------CCcccccCCCCCcHHHHHHHcCCHHH
Confidence 57888999999999999987 677777777763 223 3346777777777777777777
Q ss_pred HHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhH
Q 042906 92 VSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDS 171 (415)
Q Consensus 92 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 171 (415)
+++|+++|++++ .++..|.||||+|+..++.+++++|++.++...
T Consensus 73 v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------------------- 117 (253)
T 1yyh_A 73 AKRLLEASADAN-------------IQDNMGRTPLHAAVSADAQGVFQILIRNRATDL---------------------- 117 (253)
T ss_dssp HHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCT----------------------
T ss_pred HHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc----------------------
Confidence 777777777665 456677777777777777777777777665222
Q ss_pred HHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhh
Q 042906 172 ACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL 251 (415)
Q Consensus 172 ~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~ 251 (415)
+..+..|.||||+|+..++.+++++|++.|+++
T Consensus 118 -----------------------------------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 150 (253)
T 1yyh_A 118 -----------------------------------------------DARMHDGTTPLILAARLAVEGMLEDLINSHADV 150 (253)
T ss_dssp -----------------------------------------------TCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT
T ss_pred -----------------------------------------------cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC
Confidence 222334556666666666666666666666665
Q ss_pred hhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCc
Q 042906 252 AYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNT 331 (415)
Q Consensus 252 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t 331 (415)
+ ..+..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|+++|++ ++.+|..|+|
T Consensus 151 ~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t 225 (253)
T 1yyh_A 151 N-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRL 225 (253)
T ss_dssp T-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCC
T ss_pred C-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccCCCC
Confidence 5 4566677777777777777777777777766 466777777777777777777777777777666 6667777777
Q ss_pred HHHHHHhcCChHHHHHHhhc
Q 042906 332 PLHLAAMGLHSDVVFTLSRH 351 (415)
Q Consensus 332 ~l~~A~~~~~~~~~~~Ll~~ 351 (415)
|+++|+..|+.+++++|...
T Consensus 226 pl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 226 PRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 77777777777777777654
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2e-40 Score=276.58 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=68.6
Q ss_pred ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA 301 (415)
Q Consensus 222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~ 301 (415)
+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|++.+++ ++.+|..|.||||+|+
T Consensus 108 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~ 185 (237)
T 3b7b_A 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAA 185 (237)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence 3345555555555555555555555555554 3455555666666666666666666665555 3555555666666666
Q ss_pred hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906 302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346 (415)
Q Consensus 302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 346 (415)
..++.+++++|+++|++ ++.+|..|+||||+|+..++...+.
T Consensus 186 ~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 186 RENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp HTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred HhCCHhHHHHHHHcCCC---CCccCCCCCCHHHHHHHHHHHHHHH
Confidence 66666666666655555 5555556666666666555554333
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.8e-41 Score=282.59 Aligned_cols=236 Identities=22% Similarity=0.260 Sum_probs=182.4
Q ss_pred ccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCC
Q 042906 28 STSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGP 107 (415)
Q Consensus 28 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 107 (415)
+.+|.+|.||||+|+..|+.+++++|++... ..+..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---- 73 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-----QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM---- 73 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHH-----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT----
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHH-----hcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc----
Confidence 4567778888888888888888888887311 1256677777788888888888888888888888877665
Q ss_pred cchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCC
Q 042906 108 LPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTR 187 (415)
Q Consensus 108 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~ 187 (415)
..+..|.||||+|+..++.+++++|++.++...
T Consensus 74 ---------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-------------------------------------- 106 (241)
T 1k1a_A 74 ---------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT-------------------------------------- 106 (241)
T ss_dssp ---------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTS--------------------------------------
T ss_pred ---------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------------------------------------
Confidence 456677888888888888888888877665210
Q ss_pred CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906 188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267 (415)
Q Consensus 188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 267 (415)
..++..+..|.||||+|+..++.+++++|++.|.+++......|.||||+|+
T Consensus 107 ----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 107 ----------------------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp ----------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred ----------------------------ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence 0133445667888888888888889999998888877433377899999999
Q ss_pred HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHH
Q 042906 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347 (415)
Q Consensus 268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 347 (415)
..++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|+++|++ ++.+|..|+|||++|+..|+.++++.
T Consensus 159 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~i~~~ 234 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVIDILRG 234 (241)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence 99999999999999888 588899999999999999999999999999887 88889999999999999999999998
Q ss_pred Hhhc
Q 042906 348 LSRH 351 (415)
Q Consensus 348 Ll~~ 351 (415)
|++.
T Consensus 235 l~~~ 238 (241)
T 1k1a_A 235 KATR 238 (241)
T ss_dssp ----
T ss_pred hccC
Confidence 8864
No 22
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.6e-41 Score=280.79 Aligned_cols=218 Identities=25% Similarity=0.259 Sum_probs=158.0
Q ss_pred hhcccCCCChHHHHHHHcC-------------CHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCC
Q 042906 115 FRMRDIEGNTPLHNAVTNQ-------------HKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPE 181 (415)
Q Consensus 115 ~~~~~~~g~t~l~~A~~~~-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~ 181 (415)
++.+|..|.||||+|+..| +.+++++|++.|+++....+..|.
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~------------------------ 58 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE------------------------ 58 (253)
T ss_dssp -------------------------------------------------CCCTTSC------------------------
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCC------------------------
Confidence 4467889999999999987 566666666666555433444444
Q ss_pred CccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCC
Q 042906 182 SLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGET 261 (415)
Q Consensus 182 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 261 (415)
||||+|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.+.......+..|.|
T Consensus 59 -----------t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t 126 (253)
T 1yyh_A 59 -----------TALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126 (253)
T ss_dssp -----------CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCC
T ss_pred -----------cHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCc
Confidence 455555555555555555555433 66678889999999999999999999999998444468899999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCC
Q 042906 262 PLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLH 341 (415)
Q Consensus 262 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~ 341 (415)
|||+|+..++.+++++|++.|++ ++.++..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~ 202 (253)
T 1yyh_A 127 PLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGS 202 (253)
T ss_dssp HHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHCCC
Confidence 99999999999999999999999 699999999999999999999999999999988 89999999999999999999
Q ss_pred hHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906 342 SDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 342 ~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
.+++++|+++ |++++.+|..| +||+++|++.
T Consensus 203 ~~~v~~Ll~~-ga~~~~~d~~g--~tpl~~A~~~ 233 (253)
T 1yyh_A 203 YETAKVLLDH-FANRDITDHMD--RLPRDIAQER 233 (253)
T ss_dssp HHHHHHHHHT-TCCTTCCCTTC--CCHHHHHHHT
T ss_pred HHHHHHHHHc-CCCccccccCC--CCHHHHHHHc
Confidence 9999999986 99999999999 9999999985
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.5e-40 Score=273.93 Aligned_cols=227 Identities=23% Similarity=0.302 Sum_probs=183.5
Q ss_pred CCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchh
Q 042906 32 PGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVL 111 (415)
Q Consensus 32 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 111 (415)
..+.+|||.|++.|+.+.+++|++. .+..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~--------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------- 67 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILA--------DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-------- 67 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHH--------CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHh--------chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC--------
Confidence 4577899999999999999998887 345577788888999999999999999999998888766
Q ss_pred hhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906 112 ESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191 (415)
Q Consensus 112 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 191 (415)
.+|..|.||||+|+..++.+++++|++.|+++.
T Consensus 68 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------------------------------------ 100 (231)
T 3aji_A 68 -----DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN------------------------------------------ 100 (231)
T ss_dssp -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------------------------------------
T ss_pred -----CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC------------------------------------------
Confidence 457788888888888888888888888776432
Q ss_pred hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCC
Q 042906 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGK 271 (415)
Q Consensus 192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 271 (415)
..+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+..++
T Consensus 101 ----------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 101 ----------------------------AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp ----------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred ----------------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCC
Confidence 123346677777777777777777777777766 567778888888888888
Q ss_pred HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906 272 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (415)
Q Consensus 272 ~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 351 (415)
.+++++|++++++ ++.++..|+||||+|+..++.+++++|+++|++ ++.+|..|+|||++|+..++.+++++|+++
T Consensus 152 ~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 152 LKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS---IYIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp HHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 8888888888888 588888888888888888888888888888877 788888888888888888888888888875
Q ss_pred cCcC
Q 042906 352 KSVN 355 (415)
Q Consensus 352 ~g~~ 355 (415)
|++
T Consensus 228 -~a~ 230 (231)
T 3aji_A 228 -EAS 230 (231)
T ss_dssp -HHC
T ss_pred -ccc
Confidence 554
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.4e-40 Score=272.78 Aligned_cols=227 Identities=22% Similarity=0.276 Sum_probs=195.6
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV 199 (415)
Q Consensus 120 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~ 199 (415)
..+.+|||.|+..|+.+++++|++.++......+..|.||||+|+..++.+++++|+
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----------------------- 60 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL----------------------- 60 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH-----------------------
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHH-----------------------
Confidence 356788888888888888888887776544445555555555555555555555554
Q ss_pred HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHH
Q 042906 200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279 (415)
Q Consensus 200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 279 (415)
+.+.. ++..+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|+
T Consensus 61 ------------~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 61 ------------QLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp ------------HTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ------------HhCCC-CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 44332 55667789999999999999999999999999887 67889999999999999999999999
Q ss_pred HhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccc
Q 042906 280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK 359 (415)
Q Consensus 280 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~ 359 (415)
+++++ ++.++..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++ |++++.+
T Consensus 127 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~ 201 (231)
T 3aji_A 127 EGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIE 201 (231)
T ss_dssp HTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCC
T ss_pred HcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCCHHHHHHHCCCHHHHHHHHHC-CCCCCCC
Confidence 99999 599999999999999999999999999999988 899999999999999999999999999986 9999999
Q ss_pred ccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906 360 NRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK 397 (415)
Q Consensus 360 d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~ 397 (415)
|..| +|||++|.+ .+..+++++|+++||+
T Consensus 202 ~~~g--~t~l~~A~~-------~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 202 NKEE--KTPLQVAKG-------GLGLILKRLAEGEEAS 230 (231)
T ss_dssp CTTS--CCHHHHSCH-------HHHHHHHHHHHHHHHC
T ss_pred CCCC--CCHHHHHHh-------hHHHHHHHHHcccccc
Confidence 9999 999999998 6889999999999985
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-40 Score=276.55 Aligned_cols=229 Identities=26% Similarity=0.299 Sum_probs=189.2
Q ss_pred hcccCCCChHHHHHHHcCCHHHHHHHHh----CCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906 116 RMRDIEGNTPLHNAVTNQHKRVIRILVE----KDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191 (415)
Q Consensus 116 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 191 (415)
+.+|..|.||||+|+..|+.+++++|++ .+.++. ..+..|.||||+|+..++.+++++|++
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------- 67 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVT-------------- 67 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH--------------
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHH--------------
Confidence 4578899999999999999999999987 455443 455556666666665555555555554
Q ss_pred hhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhch----hhhhccCCCCCCHHHHHH
Q 042906 192 LTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESK----QLAYKRDCNGETPLHLAA 267 (415)
Q Consensus 192 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~A~ 267 (415)
.+.. ++..+..|.||||+|+..++.+++++|++.+. +.. ..+..|.||||+|+
T Consensus 68 ---------------------~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~ 124 (241)
T 1k1a_A 68 ---------------------AGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAV 124 (241)
T ss_dssp ---------------------TTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHH
T ss_pred ---------------------cCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHH
Confidence 3332 55567788999999999999999999999987 444 57889999999999
Q ss_pred HcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHH
Q 042906 268 ENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVF 346 (415)
Q Consensus 268 ~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 346 (415)
..++.+++++|++.+++ ++..+ ..|.||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+.++++
T Consensus 125 ~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~ 200 (241)
T 1k1a_A 125 NTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRGLLPLVR 200 (241)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999 47777 8899999999999999999999999988 8999999999999999999999999
Q ss_pred HHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 042906 347 TLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYA 396 (415)
Q Consensus 347 ~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga 396 (415)
+|+++ |++++.+|..| +|||++|++ .+..++++.|.+.+|
T Consensus 201 ~Ll~~-ga~~~~~~~~g--~tpl~~A~~-------~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 201 TLVRS-GADSSLKNCHN--DTPLMVARS-------RRVIDILRGKATRPA 240 (241)
T ss_dssp HHHHT-TCCTTCCCTTS--CCTTTTCSS-------HHHHHHHTC------
T ss_pred HHHhc-CCCCCCcCCCC--CCHHHHHHh-------cCcHHHHhhhccCCC
Confidence 99986 99999999999 999999999 689999999999886
No 26
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1e-39 Score=272.24 Aligned_cols=217 Identities=28% Similarity=0.392 Sum_probs=179.3
Q ss_pred hhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCC
Q 042906 69 LRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP 148 (415)
Q Consensus 69 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 148 (415)
++.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 70 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-------------TCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-------------ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 44566667777777777777777777777766655 34556777777777777777777776665533
Q ss_pred cccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCH
Q 042906 149 SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNP 228 (415)
Q Consensus 149 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~ 228 (415)
. ..+..|.||
T Consensus 71 ~----------------------------------------------------------------------~~~~~g~t~ 80 (237)
T 3b7b_A 71 D----------------------------------------------------------------------PKDAEGSTC 80 (237)
T ss_dssp C----------------------------------------------------------------------CCCTTSCCH
T ss_pred C----------------------------------------------------------------------CCCCCCCcH
Confidence 2 224456788
Q ss_pred HHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHH
Q 042906 229 LHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 308 (415)
Q Consensus 229 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~ 308 (415)
||+|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..++.++
T Consensus 81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence 88888888888888888887433336788999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906 309 VSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 309 ~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
+++|++.|++ ++.+|..|.||||+|+..++.+++++|+++ |++++.+|.+| +|||++|+++
T Consensus 160 ~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g--~t~l~~A~~~ 220 (237)
T 3b7b_A 160 AEILLAAKCD---LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKEG--ETPLQCASLN 220 (237)
T ss_dssp HHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTS--CCHHHHSCTT
T ss_pred HHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCccCCCC--CCHHHHHHHH
Confidence 9999999988 899999999999999999999999999986 99999999999 9999999984
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.4e-39 Score=269.82 Aligned_cols=213 Identities=25% Similarity=0.315 Sum_probs=172.5
Q ss_pred CCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCccccccc
Q 042906 76 DETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKA 155 (415)
Q Consensus 76 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 155 (415)
|+||||+|+..|+.+++++|++.+++... ..+..|.||||+|+..|+.+++++|++.|++...
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~----- 64 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLL------------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL----- 64 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCG-----
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccc------------cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc-----
Confidence 67888888888888888888887765432 3567788888888888888888888877743220
Q ss_pred CCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhc
Q 042906 156 YQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAAS 235 (415)
Q Consensus 156 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~ 235 (415)
....+..|.||||+|+..
T Consensus 65 --------------------------------------------------------------~~~~~~~g~t~L~~A~~~ 82 (228)
T 2dzn_A 65 --------------------------------------------------------------DDYPDDSGWTPFHIACSV 82 (228)
T ss_dssp --------------------------------------------------------------GGCCCTTSCCHHHHHHHH
T ss_pred --------------------------------------------------------------cccCCCCCCCHHHHHHHc
Confidence 001344567788888888
Q ss_pred CCHHHHHHHHHhc--hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHh
Q 042906 236 GNVKMAQRLLEES--KQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 313 (415)
Q Consensus 236 ~~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 313 (415)
|+.+++++|+++| .+.+ ..+..|.||||+|+..++.+++++|+++|++ ++.++..|.||||+|+..++.+++++|+
T Consensus 83 ~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 83 GNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp CCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 8888888888877 5555 5677889999999999999999999999888 5889999999999999999999999999
Q ss_pred hCC-CcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906 314 KSP-EMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374 (415)
Q Consensus 314 ~~~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~ 374 (415)
+.| .+ ++.+|..|+||||+|+..|+.+++++|++..|++++.+|.+| +||+++|.+
T Consensus 161 ~~g~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g--~t~l~~A~~ 217 (228)
T 2dzn_A 161 GLGKSA---VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG--AKAEDVALN 217 (228)
T ss_dssp TTTCCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS--CBGGGGCSS
T ss_pred hcCccc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC--CcHHHHHHH
Confidence 998 55 888999999999999999999999999944599999999999 999999977
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.1e-39 Score=266.39 Aligned_cols=224 Identities=25% Similarity=0.297 Sum_probs=180.8
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhh
Q 042906 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLES 113 (415)
Q Consensus 34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 113 (415)
|+||||+|+..|+.+++++|++.+ ....+..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~--------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------- 63 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK--------PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN---------- 63 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC--------GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCC----------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC--------ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc----------
Confidence 789999999999999999999984 34455689999999999999999999999999995544
Q ss_pred hhhc-ccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcch
Q 042906 114 LFRM-RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDEL 192 (415)
Q Consensus 114 ~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 192 (415)
+.. .+..|.||||+|+..|+.+++++|++.|....
T Consensus 64 -~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------------------------- 99 (228)
T 2dzn_A 64 -LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD------------------------------------------- 99 (228)
T ss_dssp -GGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-------------------------------------------
T ss_pred -ccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-------------------------------------------
Confidence 223 67899999999999999999999998873211
Q ss_pred hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH
Q 042906 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272 (415)
Q Consensus 193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 272 (415)
++..+..|.||||.|+..++.+++++|+++|.+++ ..+..|.||||+|+..++.
T Consensus 100 -------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~ 153 (228)
T 2dzn_A 100 -------------------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSL 153 (228)
T ss_dssp -------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCH
T ss_pred -------------------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCH
Confidence 22234456777888888888888888888877776 5677888888888888888
Q ss_pred HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHh-hCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906 273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL-KSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (415)
Q Consensus 273 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 351 (415)
+++++|++.+...++.+|..|+||||+|+..++.+++++|+ +.|++ ++.+|..|+||+++|+.. +++++|+++
T Consensus 154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~---~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC---SCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC---CCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 88888888883336888888888888888888888888888 77877 788888888888888643 666777653
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=268.84 Aligned_cols=235 Identities=23% Similarity=0.270 Sum_probs=170.8
Q ss_pred hcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCc
Q 042906 70 RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS 149 (415)
Q Consensus 70 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~ 149 (415)
+..|..|.|||+.|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|++.|++..
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~ 69 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-------------QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcC-------------CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch
Confidence 3456667777777777777777777777776655 346677777777777777777777777765443
Q ss_pred ccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHH
Q 042906 150 SYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPL 229 (415)
Q Consensus 150 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l 229 (415)
.. .+..|.|||
T Consensus 70 ~~---------------------------------------------------------------------~~~~~~t~L 80 (240)
T 3eu9_A 70 QL---------------------------------------------------------------------GGDLNSTPL 80 (240)
T ss_dssp CC---------------------------------------------------------------------BTTTTBCHH
T ss_pred hh---------------------------------------------------------------------cCCcCCChh
Confidence 21 122355677
Q ss_pred HHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-HHH
Q 042906 230 HYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-WNI 308 (415)
Q Consensus 230 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~-~~~ 308 (415)
|.|+..++.+++++|++.|.++. ..+..|.||||+|+..++.+++++|++++++ ++.++..|.||||+|+..++ .++
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~ 158 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDP 158 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHH
Confidence 77777777777777777777666 4667778888888888888888888888877 47778888888888886555 778
Q ss_pred HHHHhhCCCcccccccCCC-CCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHH
Q 042906 309 VSFILKSPEMENLINLVDR-NGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLT 387 (415)
Q Consensus 309 ~~~Ll~~~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~ 387 (415)
+++|++.|.+ ++..+. .|.||||+|+..|+.+++++|+++ |++++.+|..| .|||++|++ .++.++
T Consensus 159 ~~~L~~~~~~---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~t~l~~A~~-------~~~~~~ 225 (240)
T 3eu9_A 159 TRLLLTFNVS---VNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKG--ESALDLAKQ-------RKNVWM 225 (240)
T ss_dssp HHHHHHTTCC---TTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTS--CBHHHHHHH-------TTCHHH
T ss_pred HHHHHhcCCC---cchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHH-------cCcHHH
Confidence 8888888776 777776 788888888888888888888875 78888888888 888888888 477788
Q ss_pred HHHHHHHHHHHhhc
Q 042906 388 LKALKTAYAKRALS 401 (415)
Q Consensus 388 ~~~L~~~Ga~~~~~ 401 (415)
+++|+++|++....
T Consensus 226 v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 226 INHLQEARQAKGYD 239 (240)
T ss_dssp HHHHHHHC------
T ss_pred HHHHHHhhhccCcC
Confidence 88888888876543
No 30
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-40 Score=279.04 Aligned_cols=240 Identities=23% Similarity=0.273 Sum_probs=177.1
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHH
Q 042906 117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLH 196 (415)
Q Consensus 117 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~ 196 (415)
.+|..+.+||+.|+..|+.++|++|++.++........ .....+..+.+||+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~----------------------------~~~~~~~~~~t~L~ 57 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED----------------------------TVSAADPEFCHPLC 57 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccc----------------------------cccccCccCCCHHH
Confidence 45777889999999999999999999988754311000 01112245668888
Q ss_pred HHHHcCCHH-HHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHH
Q 042906 197 FVVMRQNYD-IMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVL 275 (415)
Q Consensus 197 ~a~~~~~~~-~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 275 (415)
.|+..+..+ ++..|+..+.+ ++..+..|.||||+|+..|+.+++++|++.++++. ..+..|.||++.|+..++.+++
T Consensus 58 ~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~ 135 (269)
T 4b93_B 58 QCPKCAPAQKRLAKVPASGLG-VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVV 135 (269)
T ss_dssp -----------------CCCC-TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHH
Confidence 888776654 56777777655 88899999999999999999999999999999987 6888999999999999999999
Q ss_pred HHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906 276 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (415)
Q Consensus 276 ~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~ 355 (415)
++|++.|++ ++.+|..|+||||+|+..|+.+++++|++.|++ +|.++..|+||||+|+..|+.+++++|+++ |+|
T Consensus 136 ~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-Gad 210 (269)
T 4b93_B 136 KCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFVVELLLLH-GAS 210 (269)
T ss_dssp HHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred HHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCccccCCCcHHHHHHHcCCHHHHHHHHHC-CCC
Confidence 999999999 599999999999999999999999999999988 999999999999999999999999999986 999
Q ss_pred ccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Q 042906 356 IRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRA 399 (415)
Q Consensus 356 ~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~ 399 (415)
++.+|.+| +||||+|+++ ..-.+++++|...|+..+
T Consensus 211 ~~~~d~~G--~TpL~~A~~~------~~i~~lL~~l~~~~~~~~ 246 (269)
T 4b93_B 211 VQVLNKRQ--RTAVDCAEQN------SKIMELLQVVPSCVASLD 246 (269)
T ss_dssp SCCCCTTS--CCSGGGSCTT------CHHHHHTTC---------
T ss_pred CCCcCCCC--CCHHHHHHhC------CcHHHHHHHHHHhchhhh
Confidence 99999999 9999999874 122456777777777643
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.5e-39 Score=276.46 Aligned_cols=238 Identities=18% Similarity=0.161 Sum_probs=146.3
Q ss_pred HHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhC
Q 042906 8 VLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIG 87 (415)
Q Consensus 8 A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g 87 (415)
+++..+.+.+..++..+ +++..|..|.||||+|+..|+.+++++|++. +++++.. +|+||||+|+..|
T Consensus 6 ~i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~--~g~t~L~~A~~~g 73 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK-DTFKADVHGHSASYYAIADNNVRLVCTLLNA---------GALKNLL--ENEFPLHQAATLE 73 (285)
T ss_dssp TGGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TGGGSCC--TTCCHHHHHTTSS
T ss_pred HHHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhC---------CCCCCCC--CCCCHHHHHHHcC
Confidence 45667777777777766 5788888889999999999999999999887 4445555 3888999999888
Q ss_pred cHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccC-CcHHHHHHHc
Q 042906 88 NRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAY-QTPLSIAIDA 166 (415)
Q Consensus 88 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~l~~a~~~ 166 (415)
+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+++. ..+..| .||||+|+..
T Consensus 74 ~~~~v~~Ll~~ga~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 74 DTKIVKILLFSGLDDS-------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVML 139 (285)
T ss_dssp SCHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHT
T ss_pred CHHHHHHHHHCCCCCC-------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHc
Confidence 8899999998888776 467788888888888888888888888877554 233333 3444444444
Q ss_pred CChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHH
Q 042906 167 RLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246 (415)
Q Consensus 167 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 246 (415)
++.+++++|++.+ ....+ ...|.||||+|+..|+.+++++|++
T Consensus 140 ~~~~~v~~Ll~~g-----------------------------------~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 140 NDVSIVSYFLSEI-----------------------------------PSTFD--LAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp TCHHHHHHHHTTS-----------------------------------CTTCC--CSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHhCC-----------------------------------Ccccc--ccCCccHHHHHHHcChHHHHHHHHH
Confidence 4443333333322 11100 0134455555555555555555555
Q ss_pred hchhhhhccCCCCCCH-HHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCC
Q 042906 247 ESKQLAYKRDCNGETP-LHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317 (415)
Q Consensus 247 ~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 317 (415)
+|++++ ..+..|.|| ||+|+..++.+++++|+++|++ ++..+ +.|+..++.+++++|+++|.
T Consensus 183 ~gad~n-~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 183 YMTSTN-TNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp HHHHTC-TTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHH
T ss_pred cCCCCC-cccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCC
Confidence 555444 344444444 5555555555555555555544 23333 12334444444444444443
No 32
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-39 Score=280.23 Aligned_cols=274 Identities=20% Similarity=0.234 Sum_probs=217.3
Q ss_pred HHHHcCChhHHHHHHhhccccccC---------CCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCC
Q 042906 7 EVLRNGDENKIKQLALRQNIFSTS---------SPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDE 77 (415)
Q Consensus 7 ~A~~~g~~~~v~~ll~~~~~~~~~---------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~ 77 (415)
.+++.+..+.++.++.....+... +..|.||||.||..|+.+++++|++. +.+++..+..|.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~---------g~~~~~~~~~g~ 74 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER---------GADINYANVDGL 74 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH---------CCCTTCBCTTCC
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc---------CCCCcccCCCCC
Confidence 578888999999999887544322 23567999999999999999999997 566788999999
Q ss_pred ChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCC
Q 042906 78 TPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQ 157 (415)
Q Consensus 78 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 157 (415)
||||+|+..|+.+++++|+++|++++ ..|..|.||||+|+..|+.+++++|++.|+++. ..+..|.
T Consensus 75 t~L~~A~~~g~~~~v~~Ll~~ga~~~-------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~ 140 (299)
T 1s70_B 75 TALHQACIDDNVDMVKFLVENGANIN-------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGD 140 (299)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCC-------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCC
Confidence 99999999999999999999999877 568899999999999999999999999999876 6788899
Q ss_pred cHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC
Q 042906 158 TPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN 237 (415)
Q Consensus 158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~ 237 (415)
||+++|+..+..+++++++......... ....+.++++
T Consensus 141 t~l~~A~~~~~~~~~~~ll~~~~~~~~~-----------------------------------~~~~~~~~~~------- 178 (299)
T 1s70_B 141 TPLDIAEEEAMEELLQNEVNRQGVDIEA-----------------------------------ARKEEERIML------- 178 (299)
T ss_dssp CHHHHCCSHHHHHHHHHHHHHHTCCHHH-----------------------------------HHHHHHHHHH-------
T ss_pred CHHHHHHhcchHHHHHHHHhhcCCCchh-----------------------------------hhhhhhhHHH-------
Confidence 9999999888888888777543221100 0000001111
Q ss_pred HHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCC
Q 042906 238 VKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 317 (415)
Q Consensus 238 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 317 (415)
..+..++..+.......+..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 179 -~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 256 (299)
T 1s70_B 179 -RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256 (299)
T ss_dssp -HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred -HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence 1233445555544445677888999999999999999999998888 58888999999999999999999999999988
Q ss_pred cccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906 318 MENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (415)
Q Consensus 318 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 351 (415)
+ ++.+|..|+|||++|... ..+.++.|++.
T Consensus 257 d---~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 257 D---MEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp C---TTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred C---CCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 7 888899999999999664 45555555544
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-40 Score=275.74 Aligned_cols=222 Identities=18% Similarity=0.224 Sum_probs=107.7
Q ss_pred cCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcH-HHHHHHHhhccccccCCC
Q 042906 29 TSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNR-AIVSEIVKYVPAVNQAGP 107 (415)
Q Consensus 29 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~ 107 (415)
.+|..+.++|+.||..|+.++|++|++.++..... ....++..+..|.|||+.|+..+.. .++++|++.|++++
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn---- 80 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED-AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN---- 80 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCCTT----
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc-ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC----
Confidence 35666789999999999999999999987643211 2234567778889999999887765 47889999998877
Q ss_pred cchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCC
Q 042906 108 LPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTR 187 (415)
Q Consensus 108 ~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~ 187 (415)
.+|.+|.||||+|+..|+.+++++|++.++++. ..+..|.||+++|+..++.+++++|+
T Consensus 81 ---------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~~~~~~~~Ll----------- 139 (269)
T 4b93_B 81 ---------VTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQGHFQVVKCLL----------- 139 (269)
T ss_dssp ---------CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHH-----------
T ss_pred ---------CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccChHHHHHHHH-----------
Confidence 568889999999999999999999998887654 33333333333333333333332222
Q ss_pred CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906 188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267 (415)
Q Consensus 188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 267 (415)
+.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+
T Consensus 140 ------------------------~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn-~~~~~g~t~Lh~A~ 193 (269)
T 4b93_B 140 ------------------------DSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN-ASNNKGNTALHEAV 193 (269)
T ss_dssp ------------------------HTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT-CBCTTSCBHHHHHH
T ss_pred ------------------------HCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC-ccccCCCcHHHHHH
Confidence 22211 33334444444444444444444444444444444 34444444444444
Q ss_pred HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303 (415)
Q Consensus 268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 303 (415)
..|+.+++++|+++|++ ++.+|..|+||||+|+++
T Consensus 194 ~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~ 228 (269)
T 4b93_B 194 IEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQN 228 (269)
T ss_dssp HTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTT
T ss_pred HcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhC
Confidence 44444444444444444 244444444444444443
No 34
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-39 Score=280.22 Aligned_cols=272 Identities=17% Similarity=0.213 Sum_probs=207.9
Q ss_pred HHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhccc
Q 042906 40 MAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRD 119 (415)
Q Consensus 40 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~ 119 (415)
.++..++.+.++.++..................+..|.|||+.||..|+.+++++|+++|++++ ..|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~ 70 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-------------YAN 70 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-------------CBC
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-------------ccC
Confidence 4667777888888887643321111111122234456799999999999999999999999877 568
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV 199 (415)
Q Consensus 120 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~ 199 (415)
..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.+.+
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~------------------ 131 (299)
T 1s70_B 71 VDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAH------------------ 131 (299)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC------------------
Confidence 899999999999999999999999998875 5566677777777776666666666654432
Q ss_pred HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHH
Q 042906 200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279 (415)
Q Consensus 200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 279 (415)
++..+..|.||||+|+..++.+++++++.............+.+++ ...++.++
T Consensus 132 ------------------~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~--------~~~~~~~l 185 (299)
T 1s70_B 132 ------------------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM--------LRDARQWL 185 (299)
T ss_dssp ------------------TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH--------HHHHHHHH
T ss_pred ------------------CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH--------HHHHHHHH
Confidence 4455667788888888888888888777653322111111112222 23455566
Q ss_pred HhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccc
Q 042906 280 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAK 359 (415)
Q Consensus 280 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~ 359 (415)
..+.......+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+
T Consensus 186 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~ 261 (299)
T 1s70_B 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAV 261 (299)
T ss_dssp HHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred hccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCc
Confidence 666665567788999999999999999999999999988 899999999999999999999999999986 9999999
Q ss_pred ccccccchhHHHHHHh
Q 042906 360 NRSARNNIALEIAEIT 375 (415)
Q Consensus 360 d~~g~~~t~l~~a~~~ 375 (415)
|..| +|||++|.+.
T Consensus 262 d~~g--~t~l~~A~~~ 275 (299)
T 1s70_B 262 NKVG--QTAFDVADED 275 (299)
T ss_dssp CTTS--CCTTTSCCSG
T ss_pred CCCC--CCHHHHHHHH
Confidence 9999 9999999874
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.8e-38 Score=271.16 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=196.2
Q ss_pred hhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 042906 68 LLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147 (415)
Q Consensus 68 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 147 (415)
.++.+|..|.||||+|+..|+.+++++|+++|++++. . +|.||||+|+..|+.+++++|++.|++
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 87 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-------------L--ENEFPLHQAATLEDTKIVKILLFSGLD 87 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-------------C--TTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------C--CCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 3688899999999999999999999999999998772 2 589999999999999999999999987
Q ss_pred CcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCC-C
Q 042906 148 PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ-R 226 (415)
Q Consensus 148 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~ 226 (415)
+. ..+..|.||||+|+..++.++++ +|++.+.+ ++..+..| .
T Consensus 88 ~~-~~d~~g~t~L~~A~~~g~~~~v~-----------------------------------~Ll~~ga~-~~~~~~~g~~ 130 (285)
T 3kea_A 88 DS-QFDDKGNTALYYAVDSGNMQTVK-----------------------------------LFVKKNWR-LMFYGKTGWK 130 (285)
T ss_dssp TT-CCCTTSCCHHHHHHHTTCHHHHH-----------------------------------HHHHHCGG-GGGCSSSGGG
T ss_pred CC-CcCCCCCcHHHHHHHcCCHHHHH-----------------------------------HHHhcCCC-CCccCCCCCC
Confidence 75 45556666666665555555554 44444433 66677778 7
Q ss_pred CHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcH-HHHHHhcCC
Q 042906 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSI-LHVAAKHGN 305 (415)
Q Consensus 227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~ 305 (415)
||||+|+..|+.+++++|+++|++.. ....|.||||+|+..++.+++++|+++|++ ++.++..|+|| ||+|+..++
T Consensus 131 t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~ 207 (285)
T 3kea_A 131 TSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKD 207 (285)
T ss_dssp SHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCC
Confidence 99999999999999999999998764 223899999999999999999999999999 59999999998 999999999
Q ss_pred HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906 306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374 (415)
Q Consensus 306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~ 374 (415)
.+++++|+++|++ ++.++ +.|+..|+.+++++|+++ |++++...... .+.++..
T Consensus 208 ~~~v~~Ll~~gad---~~~~~-------~~a~~~~~~~iv~~Ll~~-g~~~~~~~~~~----~~~~~~~ 261 (285)
T 3kea_A 208 IEMLQALFKYDIN---IYSAN-------LENVLLDDAEIAKMIIEK-HVEYKSDSYTK----DLDIVKN 261 (285)
T ss_dssp HHHHHHHTTSCBC---STTTT-------GGGGTTTCHHHHHHHHHH-HHHHTTCTTTT----TCHHHHT
T ss_pred HHHHHHHHHcCCC---CCCCC-------hhhhhcCCHHHHHHHHHc-CCCCCCccccc----hHHHHhh
Confidence 9999999999988 77776 366889999999999986 99888765443 5555544
No 36
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=258.05 Aligned_cols=231 Identities=20% Similarity=0.231 Sum_probs=147.8
Q ss_pred cccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCC
Q 042906 27 FSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAG 106 (415)
Q Consensus 27 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 106 (415)
++..|..|.|+||.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|+++..
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-- 70 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEA---------GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ-- 70 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHc---------CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchh--
Confidence 455677899999999999999999999998 567788899999999999999999999999999997763
Q ss_pred CcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCC
Q 042906 107 PLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTT 186 (415)
Q Consensus 107 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~ 186 (415)
..+..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++|+..++.+++++|++.
T Consensus 71 ----------~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-------- 131 (240)
T 3eu9_A 71 ----------LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAK-------- 131 (240)
T ss_dssp ----------CBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHT--------
T ss_pred ----------hcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhc--------
Confidence 234569999999999999999999999987664 3343444444444433333333333322
Q ss_pred CCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCC-HHHHHHHHHhchhhhhccCCCCCCHHHH
Q 042906 187 RLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGN-VKMAQRLLEESKQLAYKRDCNGETPLHL 265 (415)
Q Consensus 187 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~L~~ 265 (415)
+.. ++..+..|.||||+|+..++ .+++++|++.+.+++......|.||||+
T Consensus 132 ---------------------------~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~ 183 (240)
T 3eu9_A 132 ---------------------------GQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183 (240)
T ss_dssp ---------------------------TCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred ---------------------------CCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHH
Confidence 111 23333444455555553333 4445555555544442111244455555
Q ss_pred HHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC
Q 042906 266 AAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 316 (415)
Q Consensus 266 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 316 (415)
|+..++.+++++|+++|++ ++.++..|.|||++|+..++.+++++|++.+
T Consensus 184 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 184 AVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 5555555555555555544 2444445555555555555555555555444
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.1e-37 Score=255.72 Aligned_cols=194 Identities=25% Similarity=0.248 Sum_probs=145.8
Q ss_pred cchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc
Q 042906 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN 269 (415)
Q Consensus 190 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 269 (415)
.|.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.+.......+..|.||||+|+..
T Consensus 24 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 102 (223)
T 2f8y_A 24 TGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102 (223)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH
T ss_pred CCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh
Confidence 444555555555555555555555433 5556677778888888888888888888877644335677788888888888
Q ss_pred CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906 270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (415)
Q Consensus 270 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 349 (415)
++.+++++|++++++ ++..+..|.||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+
T Consensus 103 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 178 (223)
T 2f8y_A 103 AVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLL 178 (223)
T ss_dssp TCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence 888888888888877 477788888888888888888888888888776 7778888888888888888888888888
Q ss_pred hccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906 350 RHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR 398 (415)
Q Consensus 350 ~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~ 398 (415)
++ |++++.+|..| .||+++|++ .++.+++++|+++|+..
T Consensus 179 ~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 179 DH-FANRDITDHMD--RLPRDIAQE-------RMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HT-TCCTTCCCTTC--CCHHHHHHH-------TTCHHHHHHHHHTTCSS
T ss_pred Hc-CCCCccccccC--CCHHHHHHH-------hcchHHHHHHHHcCCCc
Confidence 75 78888888888 888888888 46777888888888763
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=7.4e-37 Score=252.42 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=192.5
Q ss_pred CCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHh
Q 042906 133 QHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILG 212 (415)
Q Consensus 133 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 212 (415)
|+.+++++|++.|+++....+..|.||||+|+..|+.+++++|++.+.+.... +..|.||||.|+..++.+++++|++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~ 79 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIR 79 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 56778888888888877666788888888888888888888888877654433 3678899999999999999999999
Q ss_pred cChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCC
Q 042906 213 TNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS 292 (415)
Q Consensus 213 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 292 (415)
.+...++..+..|.||||+|+..++.+++++|++++.+++ ..+..|.||||+|+..++.+++++|++++++ ++.++..
T Consensus 80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~ 157 (223)
T 2f8y_A 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR 157 (223)
T ss_dssp BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence 8886788889999999999999999999999999999987 6788999999999999999999999999998 5999999
Q ss_pred CCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcc
Q 042906 293 DRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIR 357 (415)
Q Consensus 293 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~ 357 (415)
|.||||+|+..++.+++++|+++|++ ++.+|..|.|||++|+..++.+++++|+++ |+...
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~~~ 218 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRDIAQERMHHDIVRLLDEY-NLVRS 218 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCSSC
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCC---CccccccCCCHHHHHHHhcchHHHHHHHHc-CCCcc
Confidence 99999999999999999999999987 899999999999999999999999999986 77643
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=6.6e-39 Score=279.25 Aligned_cols=283 Identities=15% Similarity=0.100 Sum_probs=192.4
Q ss_pred HHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhh--------hcCCCCCCChH
Q 042906 9 LRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLL--------RQKNLMDETPL 80 (415)
Q Consensus 9 ~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~--------~~~~~~g~t~L 80 (415)
+.....+++++|++.|++++..+..|.|+++ |+.+++++|+++|++++........ ........+.+
T Consensus 27 ~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 101 (327)
T 1sw6_A 27 IITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQ 101 (327)
T ss_dssp EEECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------------------
T ss_pred hhhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchh
Confidence 3445567799999999999999999999988 9999999999997553221000000 00111122335
Q ss_pred HHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhc-ccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcH
Q 042906 81 HIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRM-RDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTP 159 (415)
Q Consensus 81 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 159 (415)
|.|+..+..+++++|++.|++++ . +|..|.||||+|+..|+.++|++|++.|+++. ..+..|.||
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~dvn-------------~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~Tp 167 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLNLN-------------IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESC 167 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCCSC-------------SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCH
T ss_pred HHHHHhhHHHHHHHHHhcCCCcc-------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence 77777777788888888888776 3 57788888888888888888888888887775 566667777
Q ss_pred HHHHHHcCC---hhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHh--
Q 042906 160 LSIAIDARL---NDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAA-- 234 (415)
Q Consensus 160 l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~-- 234 (415)
||+|+..++ .+++ ..|++.+...++..+..|.||||+|+.
T Consensus 168 Lh~A~~~g~~~~~~~~-----------------------------------~~ll~~~~~~~~~~d~~g~tpLh~A~~~~ 212 (327)
T 1sw6_A 168 LVKAVKSVNNYDSGTF-----------------------------------EALLDYLYPCLILEDSMNRTILHHIIITS 212 (327)
T ss_dssp HHHHHHSSHHHHTTCH-----------------------------------HHHHHHHGGGGGEECTTCCCHHHHHHHHH
T ss_pred HHHHHHhcccccHHHH-----------------------------------HHHHHhhhccccCCCCCCCCHHHHHHHHc
Confidence 777776655 3333 333333333467788889999999988
Q ss_pred --cCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 042906 235 --SGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312 (415)
Q Consensus 235 --~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 312 (415)
.|+.+++++|++.+........ +.. +...+.+.+++ ++.++..|.||||+|+. +++|
T Consensus 213 ~~~g~~~~v~~Ll~~~~~~~~~~~--~~~------------i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 213 GMTGCSAAAKYYLDILMGWIVKKQ--NRP------------IQSGTNEKESK-PNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHGG--GCC------------EEEC-----------------CHHHHHCS------HHHH
T ss_pred cccccHHHHHHHHHHHHHHHhccc--chH------------HHhhhhcccCC-cccccccCCChhHHHHH------HHHH
Confidence 8888999999888765442111 000 11112344677 58899999999999986 8899
Q ss_pred hhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906 313 LKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374 (415)
Q Consensus 313 l~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~ 374 (415)
++.+ ++.+|..|+||||+|+..|+.+++++|+++ |+|++.+|.+| +||||+|++
T Consensus 272 l~~~-----~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G--~TpL~~A~~ 325 (327)
T 1sw6_A 272 IANM-----LNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIANKSG--LRPVDFGAG 325 (327)
T ss_dssp HHHT-----TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTS--CCGGGGTCC
T ss_pred HHhC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCC--CCHHHHHHh
Confidence 9873 889999999999999999999999999986 99999999999 999999986
No 40
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=246.85 Aligned_cols=198 Identities=19% Similarity=0.186 Sum_probs=178.2
Q ss_pred cchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhh----hccCCCCCCHHHH
Q 042906 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA----YKRDCNGETPLHL 265 (415)
Q Consensus 190 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~----~~~~~~g~t~L~~ 265 (415)
.|.||||.|+..|+.+++++|++..+..++..+..|.||||+|+..|+.+++++|++.+++.. ...+..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 467999999999999999999998555688899999999999999999999999999998863 2456789999999
Q ss_pred HHHcCCHHHHHHHHHhCCCccccccC-------------CCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcH
Q 042906 266 AAENGKLKVLKLLINKYPDAIEIRDN-------------SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP 332 (415)
Q Consensus 266 A~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~ 332 (415)
|+..++.+++++|++++++ ++..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||
T Consensus 82 A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~ 157 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNTV 157 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred HHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCH
Confidence 9999999999999999998 466654 799999999999999999999999988 99999999999
Q ss_pred HHHHHhcCChHHH----HHHhhccCcCc------cccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 042906 333 LHLAAMGLHSDVV----FTLSRHKSVNI------RAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALS 401 (415)
Q Consensus 333 l~~A~~~~~~~~~----~~Ll~~~g~~~------~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~ 401 (415)
||+|+..++.+++ ++|+++ |+++ +.+|..| +||||+|++ .++.+++++|+++|+++...
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g--~tpl~~A~~-------~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQG--LTPFKLAGV-------EGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTS--CCHHHHHHH-------HTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCC--CCHHHHHHH-------cCCHHHHHHHHhcCccchhh
Confidence 9999999999988 999986 8888 6999999 999999999 68899999999999996543
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.1e-37 Score=257.87 Aligned_cols=101 Identities=25% Similarity=0.395 Sum_probs=67.4
Q ss_pred cCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCc
Q 042906 29 TSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPL 108 (415)
Q Consensus 29 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 108 (415)
..|.+|.||||+|+..|+.+++++|++.+.. .+..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~----- 72 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKG-----DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE----- 72 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC----------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-----
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhc-----cHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-----
Confidence 3566777777777777777777777776321 123566777777777777777777777777777777665
Q ss_pred chhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 042906 109 PVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147 (415)
Q Consensus 109 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 147 (415)
.++..|.||||+|+..|+.+++++|++.+++
T Consensus 73 --------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 103 (236)
T 1ikn_D 73 --------LRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103 (236)
T ss_dssp --------CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTT
T ss_pred --------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 4566777777777777777777777776653
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.1e-35 Score=239.53 Aligned_cols=193 Identities=19% Similarity=0.241 Sum_probs=179.8
Q ss_pred CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268 (415)
Q Consensus 189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 268 (415)
..+.++|+.|+..|+.+.++.++..++..++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHH
Confidence 4567999999999999999999999987789999999999999999999999999999999988 588899999999999
Q ss_pred cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCC-CcccccccCCCCCCcHHHHHHhcCC-----h
Q 042906 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLVDRNGNTPLHLAAMGLH-----S 342 (415)
Q Consensus 269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~g~t~l~~A~~~~~-----~ 342 (415)
.++.+++++|++.+...++..+..|.||||+|+..++.+++++|++.| .+ ++.+|..|+||||+|+..++ .
T Consensus 82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~ 158 (201)
T 3hra_A 82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLREGNQLYQ 158 (201)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhccchhhHH
Confidence 999999999997666557999999999999999999999999999998 55 89999999999999999998 9
Q ss_pred HHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906 343 DVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY 395 (415)
Q Consensus 343 ~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G 395 (415)
+++++|+++ |++++.+|..| +|||++|++ .++.+++++|+++|
T Consensus 159 ~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 159 DIVKLLMEN-GADQSIKDNSG--RTAMDYANQ-------KGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------HTCHHHHHHHHTCC
T ss_pred HHHHHHHHC-CCCCCccCCCC--CCHHHHHHH-------cCCHhHHHHHHhcC
Confidence 999999986 99999999999 999999999 68899999999876
No 43
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1e-35 Score=231.81 Aligned_cols=158 Identities=32% Similarity=0.447 Sum_probs=141.0
Q ss_pred CHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH
Q 042906 227 NPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW 306 (415)
Q Consensus 227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~ 306 (415)
+.|+.|++.|+.+++++|++.|++++ .++..|.|||++|+..++.+++++|++.|++ ++.+|..|+||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn-~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcCCH
Confidence 46889999999999999999999887 6889999999999999999999999999998 599999999999999999999
Q ss_pred HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHH
Q 042906 307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHL 386 (415)
Q Consensus 307 ~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~ 386 (415)
+++++|++.|++ +|.+|..|+||||+|+..|+.+++++|+++ |++++.+|.+| +|||++|++ .++.+
T Consensus 84 ~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G--~TpL~~A~~-------~g~~~ 150 (169)
T 4gpm_A 84 EVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDG--RTPLDLARE-------HGNEE 150 (169)
T ss_dssp HHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHH
T ss_pred HHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC--CCHHHHHHH-------cCCHH
Confidence 999999999887 899999999999999999999999999986 99999999999 999999999 47788
Q ss_pred HHHHHHHHHHHHh
Q 042906 387 TLKALKTAYAKRA 399 (415)
Q Consensus 387 ~~~~L~~~Ga~~~ 399 (415)
++++|+++||+++
T Consensus 151 iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 151 VVKLLEKQGGWLE 163 (169)
T ss_dssp HHHHHHTC-----
T ss_pred HHHHHHHCCCCcC
Confidence 9999999999864
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=6.9e-35 Score=245.77 Aligned_cols=196 Identities=21% Similarity=0.239 Sum_probs=173.8
Q ss_pred cchhHHHHHHHcCCHH----HHHHHHhcChhhhcc----cccCCCCHHHHHHhc---CCHHHHHHHHHhchhhhhc----
Q 042906 190 DELTLLHFVVMRQNYD----IMVKILGTNKELIDR----LDWHQRNPLHYAAAS---GNVKMAQRLLEESKQLAYK---- 254 (415)
Q Consensus 190 ~~~~~l~~a~~~~~~~----~~~~ll~~~~~~~~~----~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~---- 254 (415)
.|.||||.|+..|+.+ ++++++..+.. ++. .+..|.||||+|+.. |+.+++++|++.|++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 3678889999988887 44555556654 665 788999999999999 9999999999999887522
Q ss_pred ------cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCC-------------CCcHHHHHHhcCCHHHHHHHhh-
Q 042906 255 ------RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHGNWNIVSFILK- 314 (415)
Q Consensus 255 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-------------g~t~l~~A~~~~~~~~~~~Ll~- 314 (415)
.+..|.||||+|+..|+.+++++|+++|++ ++..+.. |.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 236799999999999999999999999999 5888876 9999999999999999999999
Q ss_pred --CCCcccccccCCCCCCcHHHHHHh--cCChH-------HHHHHhhccCcCc-------cccccccccchhHHHHHHhh
Q 042906 315 --SPEMENLINLVDRNGNTPLHLAAM--GLHSD-------VVFTLSRHKSVNI-------RAKNRSARNNIALEIAEITR 376 (415)
Q Consensus 315 --~~~~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~~g~~~-------~~~d~~g~~~t~l~~a~~~~ 376 (415)
.|++ ++.+|..|+||||+|+. .++.+ ++++|+++ |+++ +.+|..| +||||+|++
T Consensus 159 ~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g--~tpL~~A~~-- 230 (256)
T 2etb_A 159 PHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQG--LTPLKLAAK-- 230 (256)
T ss_dssp SSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTS--CCHHHHHHH--
T ss_pred cccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCC--CCHHHHHHH--
Confidence 7877 99999999999999999 78888 99999986 9999 9999999 999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 042906 377 ADGKEIQKHLTLKALKTAYAKRAL 400 (415)
Q Consensus 377 ~~~~~~~~~~~~~~L~~~Ga~~~~ 400 (415)
.++.+++++|+++|+++.-
T Consensus 231 -----~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 231 -----EGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp -----TTCHHHHHHHHHHHHHHHH
T ss_pred -----hCCHHHHHHHHhCCCCCCC
Confidence 5889999999999999754
No 45
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.7e-35 Score=250.65 Aligned_cols=208 Identities=19% Similarity=0.176 Sum_probs=167.7
Q ss_pred CCcchhHHHHHHHcCCHHHHHHHHhcCh---hhhc----ccccCCCCHHHHHHhc---CCHHHHHHHHHhchhhhh----
Q 042906 188 LPDELTLLHFVVMRQNYDIMVKILGTNK---ELID----RLDWHQRNPLHYAAAS---GNVKMAQRLLEESKQLAY---- 253 (415)
Q Consensus 188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~---~~~~----~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~---- 253 (415)
+..|.|+|+.|+..|+.++++.|++.+. ..++ ..+..|.||||+|+.. |+.+++++|++.|++...
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 3567788888888888887777776322 1122 3477899999999986 999999999999876321
Q ss_pred --c----cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccC--------------CCCcHHHHHHhcCCHHHHHHHh
Q 042906 254 --K----RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDN--------------SDRSILHVAAKHGNWNIVSFIL 313 (415)
Q Consensus 254 --~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~--------------~g~t~l~~A~~~~~~~~~~~Ll 313 (415)
. .+..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..|+.+++++|+
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 1 456899999999999999999999999999 588886 7999999999999999999999
Q ss_pred h---CCCcccccccCCCCCCcHHHHHHhcCC---------hHHHHHHhhccCcCcc-------ccccccccchhHHHHHH
Q 042906 314 K---SPEMENLINLVDRNGNTPLHLAAMGLH---------SDVVFTLSRHKSVNIR-------AKNRSARNNIALEIAEI 374 (415)
Q Consensus 314 ~---~~~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~g~~~~-------~~d~~g~~~t~l~~a~~ 374 (415)
+ .|++ ++.+|..|+||||+|+..++ .+++++|+++ |++++ .+|..| +||||+|++
T Consensus 169 ~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g--~TpL~~A~~ 242 (273)
T 2pnn_A 169 QNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKG--LTPLALAAS 242 (273)
T ss_dssp HCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTS--CCHHHHHHH
T ss_pred hcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCC--CCHHHHHHH
Confidence 9 7777 99999999999999999998 7999999986 99997 599999 999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-HHhhcHHHHHHHH
Q 042906 375 TRADGKEIQKHLTLKALKTAYA-KRALSAEELQQKR 409 (415)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~~Ga-~~~~~~~~~~~~~ 409 (415)
.++.+++++|+++|| ||.........+.
T Consensus 243 -------~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 243 -------SGKIGVLAYILQREIHEPECRHAAAHHHH 271 (273)
T ss_dssp -------TTCHHHHHHHHHHHTC-------------
T ss_pred -------hChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence 588999999999999 7888777666554
No 46
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.6e-34 Score=237.78 Aligned_cols=207 Identities=21% Similarity=0.253 Sum_probs=164.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhC-CCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906 121 EGNTPLHNAVTNQHKRVIRILVEK-DSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV 199 (415)
Q Consensus 121 ~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~ 199 (415)
.|.||||+|+..|+.+++++|++. |.++. ..+..|.||||+|+..|+.+++++|++.+.+....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------------- 66 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE-------------- 66 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC--------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc--------------
Confidence 578999999999999999999987 66654 56777888888888877777777777665432111
Q ss_pred HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhc------------cCCCCCCHHHHHH
Q 042906 200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYK------------RDCNGETPLHLAA 267 (415)
Q Consensus 200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~------------~~~~g~t~L~~A~ 267 (415)
..+..+..|.||||+|+..|+.+++++|+++|++++.. .+..|.||||+|+
T Consensus 67 -----------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 129 (232)
T 2rfa_A 67 -----------------PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129 (232)
T ss_dssp -----------------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH
T ss_pred -----------------cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH
Confidence 02344556778888888888888888888887776631 1337999999999
Q ss_pred HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHH----HHHhhCCCccc---ccccCCCCCCcHHHHHHhcC
Q 042906 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV----SFILKSPEMEN---LINLVDRNGNTPLHLAAMGL 340 (415)
Q Consensus 268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~----~~Ll~~~~~~~---~~~~~~~~g~t~l~~A~~~~ 340 (415)
..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++ ++|++.|++.. ..+.+|..|+||||+|+..|
T Consensus 130 ~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g 208 (232)
T 2rfa_A 130 CVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208 (232)
T ss_dssp HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence 99999999999999999 699999999999999999999988 99999998731 11688999999999999999
Q ss_pred ChHHHHHHhhccCcCcccccc
Q 042906 341 HSDVVFTLSRHKSVNIRAKNR 361 (415)
Q Consensus 341 ~~~~~~~Ll~~~g~~~~~~d~ 361 (415)
+.+++++|+++ |.+......
T Consensus 209 ~~~~v~~Ll~~-g~~~~~~~~ 228 (232)
T 2rfa_A 209 NIVMFQHLMQK-RKHIAAAHH 228 (232)
T ss_dssp CHHHHHHHHHH-HHHC-----
T ss_pred CHHHHHHHHhc-Cccchhhhc
Confidence 99999999986 766655543
No 47
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.5e-35 Score=246.71 Aligned_cols=216 Identities=22% Similarity=0.295 Sum_probs=165.6
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHhCCCCC---cccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchh
Q 042906 117 MRDIEGNTPLHNAVTNQHKRVIRILVEKDSVP---SSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELT 193 (415)
Q Consensus 117 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 193 (415)
.+|..|.||||+|+..|+.+++++|++.+... ....+. .|.|
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-----------------------------------~g~t 47 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-----------------------------------LQQT 47 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT-----------------------------------TCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCC-----------------------------------CCCC
Confidence 34556666666666666666666666555421 123333 4455
Q ss_pred HHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhh-----hhccCCCCCCHHHHHHH
Q 042906 194 LLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQL-----AYKRDCNGETPLHLAAE 268 (415)
Q Consensus 194 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~L~~A~~ 268 (415)
|||+|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.+.+. ....+..|.||||+|+.
T Consensus 48 ~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 126 (236)
T 1ikn_D 48 PLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126 (236)
T ss_dssp HHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH
Confidence 55555555555555555555543 6667778899999999999999999999988642 23577889999999999
Q ss_pred cCCHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHH
Q 042906 269 NGKLKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347 (415)
Q Consensus 269 ~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 347 (415)
.++.+++++|+++|++ ++.++. .|.||||+|+..++.+++++|+++|++ ++.+|..|+|||++|+..++.+++++
T Consensus 127 ~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~ 202 (236)
T 1ikn_D 127 HGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQLTWGRPSTRIQQQ 202 (236)
T ss_dssp TTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGGCTTSSCHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccCCCCCHHHHHHccCchHHHHH
Confidence 9999999999999999 588887 999999999999999999999999988 89999999999999999999999999
Q ss_pred HhhccCcCcc--ccccccccchhHHHHHHh
Q 042906 348 LSRHKSVNIR--AKNRSARNNIALEIAEIT 375 (415)
Q Consensus 348 Ll~~~g~~~~--~~d~~g~~~t~l~~a~~~ 375 (415)
|+++ |++.. ..+.+| .||.+.+.+.
T Consensus 203 Ll~~-ga~~~~~~~~~~~--~~~~~~~~~~ 229 (236)
T 1ikn_D 203 LGQL-TLENLQMLPESED--EESYDTESEF 229 (236)
T ss_dssp HHTT-SCGGGSSCCCCCT--TTCCCCC---
T ss_pred HHHc-chhhhhcCCccch--HHHHhhhccc
Confidence 9986 99877 888888 9999888773
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.9e-34 Score=223.55 Aligned_cols=160 Identities=26% Similarity=0.388 Sum_probs=146.8
Q ss_pred ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
..+|+.|++.|++++|+.|++.|++++.+|..|+||||+|+..++.+++++|++. +++++.+|..|+||||
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~---------gad~~~~d~~g~TpLh 75 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK---------GADVNAKDSDGRTPLH 75 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---------ccchhhhccCCCCHHH
Confidence 3679999999999999999999999999999999999999999999999999998 6778899999999999
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.|||+
T Consensus 76 ~A~~~g~~~~v~~Ll~~gadvn-------------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~ 141 (169)
T 4gpm_A 76 HAAENGHKEVVKLLISKGADVN-------------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLD 141 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHCcCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence 9999999999999999999887 578899999999999999999999999999886 78899999999
Q ss_pred HHHHcCChhHHHHHhhhCCCCcc
Q 042906 162 IAIDARLNDSACFIIDKSPESLN 184 (415)
Q Consensus 162 ~a~~~~~~~~~~~ll~~~~~~~~ 184 (415)
+|+..++.+++++|++.+.+...
T Consensus 142 ~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 142 LAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHTTCHHHHHHHHTC------
T ss_pred HHHHcCCHHHHHHHHHCCCCcCC
Confidence 99999999999999998876543
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=4.3e-35 Score=249.39 Aligned_cols=233 Identities=20% Similarity=0.249 Sum_probs=168.2
Q ss_pred hHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHc---CCHHHHHHHH
Q 042906 66 YSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTN---QHKRVIRILV 142 (415)
Q Consensus 66 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~---~~~~~v~~Ll 142 (415)
++..+..|..|+||||+|+..|+.++|+.|++.+.+....-. ......+..|.||||+|+.. |+.+++++|+
T Consensus 3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-----~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll 77 (273)
T 2pnn_A 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLT-----DSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL 77 (273)
T ss_dssp --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTT-----SGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHH
T ss_pred cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccC-----CcccccCcCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 344567889999999999999999999999986553321100 00113477899999999986 9999999999
Q ss_pred hCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccc
Q 042906 143 EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLD 222 (415)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~ 222 (415)
+.|++... +. .++... ....+
T Consensus 78 ~~ga~~~~---------------------~~-----------------------------------~~i~~~---~~~~d 98 (273)
T 2pnn_A 78 DVARKTDS---------------------LK-----------------------------------QFVNAS---YTDSY 98 (273)
T ss_dssp HHHHHTTC---------------------HH-----------------------------------HHHTCC---CCSTT
T ss_pred Hhhccccc---------------------hh-----------------------------------HHhhcc---ccccc
Confidence 88763321 00 111111 12234
Q ss_pred cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCC--------------CCCCHHHHHHHcCCHHHHHHHHH---hCCCc
Q 042906 223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDC--------------NGETPLHLAAENGKLKVLKLLIN---KYPDA 285 (415)
Q Consensus 223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~ 285 (415)
..|.||||+|+..|+.+++++|+++|++++ ..+. .|.||||+|+..++.+++++|++ .|++
T Consensus 99 ~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad- 176 (273)
T 2pnn_A 99 YKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD- 176 (273)
T ss_dssp TTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-
Confidence 567788888888888888888888887776 3443 79999999999999999999999 8888
Q ss_pred cccccCCCCcHHHHHHhcCC---------HHHHHHHhhCCCcccccc-------cCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906 286 IEIRDNSDRSILHVAAKHGN---------WNIVSFILKSPEMENLIN-------LVDRNGNTPLHLAAMGLHSDVVFTLS 349 (415)
Q Consensus 286 ~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~~-------~~~~~g~t~l~~A~~~~~~~~~~~Ll 349 (415)
++.+|..|+||||+|+..++ .+++++|++.|++ ++ .+|..|+||||+|+..|+.+++++|+
T Consensus 177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 253 (273)
T 2pnn_A 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253 (273)
T ss_dssp TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChHHHHHHHH
Confidence 69999999999999999888 8999999999887 54 58999999999999999999999999
Q ss_pred hccCc-CccccccccccchhHH
Q 042906 350 RHKSV-NIRAKNRSARNNIALE 370 (415)
Q Consensus 350 ~~~g~-~~~~~d~~g~~~t~l~ 370 (415)
++ |+ |+......+ .+|-+
T Consensus 254 ~~-ga~dp~~~~~~~--~~~~~ 272 (273)
T 2pnn_A 254 QR-EIHEPECRHAAA--HHHHH 272 (273)
T ss_dssp HH-HTC----------------
T ss_pred HC-CCCCchhhhhhh--hhccC
Confidence 87 77 899888888 76643
No 50
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-35 Score=255.83 Aligned_cols=246 Identities=18% Similarity=0.158 Sum_probs=171.4
Q ss_pred cCChhHHHHHHhhccccccC-----------------CCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhc-C
Q 042906 11 NGDENKIKQLALRQNIFSTS-----------------SPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQ-K 72 (415)
Q Consensus 11 ~g~~~~v~~ll~~~~~~~~~-----------------~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-~ 72 (415)
.|++++|+.|++.|.+.+.. .....+.+|.|+..+..+++++|++. +.+++. +
T Consensus 57 ~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---------g~dvn~~~ 127 (327)
T 1sw6_A 57 NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT---------QLNLNIPV 127 (327)
T ss_dssp HHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS---------CCCSCSCC
T ss_pred CchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc---------CCCccccc
Confidence 48999999999999775541 11222345788888888999999887 677888 8
Q ss_pred CCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCC---HHHHHHHHhCCCCCc
Q 042906 73 NLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQH---KRVIRILVEKDSVPS 149 (415)
Q Consensus 73 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~---~~~v~~Ll~~~~~~~ 149 (415)
|..|+||||+|+..|+.++|++|+++|++++ .+|..|.||||+|+..|+ .++++.|++.+....
T Consensus 128 d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-------------~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~ 194 (327)
T 1sw6_A 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRL-------------YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194 (327)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence 9999999999999999999999999999887 578899999999999998 677888887764334
Q ss_pred ccccccCCcHHHHHHH----cCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCC
Q 042906 150 SYINKAYQTPLSIAID----ARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQ 225 (415)
Q Consensus 150 ~~~~~~~~~~l~~a~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~ 225 (415)
...+..|.||||+|+. .++.+++++|++.. ...+......
T Consensus 195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~---------------------------~~~~~~~~~~--------- 238 (327)
T 1sw6_A 195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL---------------------------MGWIVKKQNR--------- 238 (327)
T ss_dssp GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHH---------------------------HHHHHHGGGC---------
T ss_pred cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHH---------------------------HHHHhcccch---------
Confidence 4677788888888887 66666666666321 0111111100
Q ss_pred CCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 042906 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305 (415)
Q Consensus 226 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 305 (415)
. +...+.+.+.+++ ..+..|.||||.|+. +++|+++ + ++.+|..|+||||+|+..|+
T Consensus 239 -~------------i~~~~~~~g~~~~-~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~ 295 (327)
T 1sw6_A 239 -P------------IQSGTNEKESKPN-DKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGN 295 (327)
T ss_dssp -C------------EEEC-----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCC
T ss_pred -H------------HHhhhhcccCCcc-cccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCC
Confidence 0 0011234466666 578889999999885 8888888 3 57888999999999999999
Q ss_pred HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC
Q 042906 306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL 340 (415)
Q Consensus 306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~ 340 (415)
.+++++|+++|++ ++.+|..|+||||+|++.|
T Consensus 296 ~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 296 ISIVDALLDYGAD---PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHHHHTTCC---TTCCCTTSCCGGGGTCC--
T ss_pred HHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence 9999999999888 8999999999999998764
No 51
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.9e-32 Score=222.15 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=155.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906 120 IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV 199 (415)
Q Consensus 120 ~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~ 199 (415)
..+.||||.|+..|+.++++.|+..+.......+..|.||||+|+..++.+++++|++.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------- 61 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR--------------------- 61 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---------------------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---------------------
Confidence 46788888888888888888888887633335566666666666666665555555544
Q ss_pred HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHH
Q 042906 200 MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLI 279 (415)
Q Consensus 200 ~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 279 (415)
+.+ ++..+..|.||||+|+..++.+++++|++.+.......+..|.||||+|+..++.+++++|+
T Consensus 62 --------------g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 126 (201)
T 3hra_A 62 --------------GAD-INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126 (201)
T ss_dssp --------------TCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred --------------CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence 332 55566778899999999999999999996655333367888999999999999999999999
Q ss_pred HhCCCccccccCCCCcHHHHHHhcCC-----HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906 280 NKYPDAIEIRDNSDRSILHVAAKHGN-----WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (415)
Q Consensus 280 ~~~~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 351 (415)
+++...++.++..|+||||+|+..++ .+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++
T Consensus 127 ~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 127 EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 99943368999999999999999888 8999999999887 889999999999999999999999999975
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=1.3e-33 Score=238.62 Aligned_cols=199 Identities=19% Similarity=0.150 Sum_probs=169.4
Q ss_pred CcchhHHHHHHHcCCHHHHHHHHh----cChhhhcccc----cCCCCHHHHHH---hcCCHHHHHHHHHhchhhhh----
Q 042906 189 PDELTLLHFVVMRQNYDIMVKILG----TNKELIDRLD----WHQRNPLHYAA---ASGNVKMAQRLLEESKQLAY---- 253 (415)
Q Consensus 189 ~~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~----~~~~t~l~~a~---~~~~~~~~~~Ll~~~~~~~~---- 253 (415)
..+.++|+.|+..|+.+.++.+++ .+.. ++..+ ..|.||||+|+ ..|+.+++++|++.|++...
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 456788888888888886555554 5543 44333 67999999999 77999999999999876321
Q ss_pred ------ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc--------------CCCCcHHHHHHhcCCHHHHHHHh
Q 042906 254 ------KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD--------------NSDRSILHVAAKHGNWNIVSFIL 313 (415)
Q Consensus 254 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------------~~g~t~l~~A~~~~~~~~~~~Ll 313 (415)
..+..|.||||+|+..|+.+++++|+++|++ ++..+ ..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 2344899999999999999999999999999 58888 68999999999999999999999
Q ss_pred h---CCCcccccccCCCCCCcHHHHHHhcCC---------hHHHHHHhhccCcCc-------cccccccccchhHHHHHH
Q 042906 314 K---SPEMENLINLVDRNGNTPLHLAAMGLH---------SDVVFTLSRHKSVNI-------RAKNRSARNNIALEIAEI 374 (415)
Q Consensus 314 ~---~~~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~g~~~-------~~~d~~g~~~t~l~~a~~ 374 (415)
+ .|++ ++.+|..|+||||+|+..++ .+++++|+++ |+++ +.+|..| +||||+|++
T Consensus 161 ~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g--~tpL~~A~~ 234 (260)
T 3jxi_A 161 ENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDG--LSPLMMAAK 234 (260)
T ss_dssp HCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTS--CCHHHHHHH
T ss_pred hccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCC--CCHHHHHHH
Confidence 9 7777 99999999999999999888 6999999986 9999 7899999 999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcH
Q 042906 375 TRADGKEIQKHLTLKALKTAYAKRALSA 402 (415)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~~Ga~~~~~~ 402 (415)
.++.+++++|+++|+++....
T Consensus 235 -------~g~~~~v~~Ll~~g~~~~~~~ 255 (260)
T 3jxi_A 235 -------TGKIGIFQHIIRREIADAAAH 255 (260)
T ss_dssp -------TTCHHHHHHHHHHHHHHHC--
T ss_pred -------cCCHHHHHHHHHhCCCccccc
Confidence 588999999999999976543
No 53
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=7.6e-32 Score=227.13 Aligned_cols=220 Identities=16% Similarity=0.145 Sum_probs=160.4
Q ss_pred hHHHHHHHcCChh----HHHHHHhhcccccc----CCCCCCCHHHHHHHh---CCHHHHHHHHhccchHHHHH--HhHhh
Q 042906 3 QELLEVLRNGDEN----KIKQLALRQNIFST----SSPGGNTVLHMAVRF---RNQQVIREILRQQNFIALRL--HYSLL 69 (415)
Q Consensus 3 ~~L~~A~~~g~~~----~v~~ll~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~--~~~~~ 69 (415)
++||.|+..|+.+ ++++|++.|.+++. .+..|.||||+|+.. |+.+++++|++.+++.+... .....
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 6899999999997 56777779999998 899999999999999 99999999999854321100 00001
Q ss_pred hcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHh---CCC
Q 042906 70 RQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVE---KDS 146 (415)
Q Consensus 70 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~---~~~ 146 (415)
...|..|.||||+|+..|+.+++++|+++|++++...............+..|.||||+|+..|+.+++++|++ .|+
T Consensus 84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga 163 (256)
T 2etb_A 84 TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163 (256)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred ccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 12447799999999999999999999999999874322111111111222349999999999999999999999 888
Q ss_pred CCcccccccCCcHHHHHHH--cCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhh------
Q 042906 147 VPSSYINKAYQTPLSIAID--ARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELI------ 218 (415)
Q Consensus 147 ~~~~~~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~------ 218 (415)
++. ..+..|.||||+|+. .++.+....+ .+++++|++.+.+ +
T Consensus 164 ~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~----------------------------~~iv~~Ll~~ga~-~~~~~~~ 213 (256)
T 2etb_A 164 SLE-ATDSLGNTVLHALVMIADNSPENSALV----------------------------IHMYDGLLQMGAR-LCPTVQL 213 (256)
T ss_dssp CTT-CCCTTSCCHHHHHHHHCCSCHHHHHHH----------------------------HHHHHHHHHHHHH-HSTTCCG
T ss_pred CcC-ccCCCCCCHHHHHHHcccCCchhhHHH----------------------------HHHHHHHHHcCCC-ccccccc
Confidence 776 677888888888887 5555522211 1244555555444 3
Q ss_pred -cccccCCCCHHHHHHhcCCHHHHHHHHHhchhhh
Q 042906 219 -DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLA 252 (415)
Q Consensus 219 -~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~ 252 (415)
+..+..|.||||+|+..|+.+++++|+++|....
T Consensus 214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 6667777777777777777777777777776654
No 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=100.00 E-value=6.5e-32 Score=213.06 Aligned_cols=170 Identities=24% Similarity=0.294 Sum_probs=149.2
Q ss_pred CCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC
Q 042906 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304 (415)
Q Consensus 225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~ 304 (415)
+.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 458999999999999999999999885557888999999999999999999999999998 5999999999999999999
Q ss_pred CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHH
Q 042906 305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQK 384 (415)
Q Consensus 305 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~ 384 (415)
+.+++++|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..| +|||++|++ .++
T Consensus 81 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~ 147 (172)
T 3v30_A 81 YTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSG--YTPMDLAVA-------LGY 147 (172)
T ss_dssp CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------HTC
T ss_pred CHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC--CCHHHHHHH-------hCc
Confidence 99999999999887 899999999999999999999999999986 99999999999 999999999 578
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHH
Q 042906 385 HLTLKALKTAYAKRALSAEELQQK 408 (415)
Q Consensus 385 ~~~~~~L~~~Ga~~~~~~~~~~~~ 408 (415)
.+++++|+++|++....+..+.+|
T Consensus 148 ~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 148 RKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHhcccCCCCCC
Confidence 899999999999987766555443
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=4.1e-32 Score=218.25 Aligned_cols=166 Identities=24% Similarity=0.285 Sum_probs=156.7
Q ss_pred hhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc
Q 042906 216 ELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS 295 (415)
Q Consensus 216 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t 295 (415)
...+..+..|.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.|
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 103 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKT 103 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCC
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence 3467788999999999999999999999999999887 6788999999999999999999999999998 5999999999
Q ss_pred HHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 296 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
|||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..| .|||++|+.
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~- 176 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTG--LTAEASARI- 176 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTS--CBHHHHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCC--CCHHHHHHH-
Confidence 99999999999999999999988 899999999999999999999999999986 99999999999 999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 042906 376 RADGKEIQKHLTLKALKTAYA 396 (415)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~~Ga 396 (415)
.++.+++++|+++|.
T Consensus 177 ------~~~~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 177 ------FGRQEVIKIFTEVRR 191 (192)
T ss_dssp ------TTCHHHHHHHHHHHH
T ss_pred ------hCcHHHHHHHHhccC
Confidence 588899999999883
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.98 E-value=2.1e-31 Score=209.09 Aligned_cols=160 Identities=24% Similarity=0.313 Sum_probs=151.8
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906 224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303 (415)
Q Consensus 224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 303 (415)
.|.||||.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 47899999999999999999999998876 6888999999999999999999999999998 599999999999999999
Q ss_pred CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHH
Q 042906 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQ 383 (415)
Q Consensus 304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~ 383 (415)
++.+++++|++.|++ ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..| +|||++|++ .+
T Consensus 80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~t~l~~A~~-------~~ 146 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSG--YNSMDLAVA-------LG 146 (167)
T ss_dssp TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------HT
T ss_pred CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHH-------cC
Confidence 999999999999887 899999999999999999999999999986 99999999999 999999999 58
Q ss_pred HHHHHHHHHHHHHHH
Q 042906 384 KHLTLKALKTAYAKR 398 (415)
Q Consensus 384 ~~~~~~~L~~~Ga~~ 398 (415)
+.+++++|+++|++.
T Consensus 147 ~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 147 YRSVQQVIESHLLKL 161 (167)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 899999999999985
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.98 E-value=2.6e-32 Score=231.72 Aligned_cols=191 Identities=19% Similarity=0.224 Sum_probs=172.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHhcChh-hhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH---
Q 042906 192 LTLLHFVVMRQNYDIMVKILGTNKE-LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA--- 267 (415)
Q Consensus 192 ~~~l~~a~~~~~~~~~~~ll~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~--- 267 (415)
.++++.|+..++.+.++.++..... .++..|..|.||||+|+..|+.+++++|++.|+......+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~ 156 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHH
Confidence 3667788888888888888876543 377889999999999999999999999999998333378999999999999
Q ss_pred --HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHH
Q 042906 268 --ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVV 345 (415)
Q Consensus 268 --~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~ 345 (415)
..++.+++++|++.+.. .+..+..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++
T Consensus 157 ~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 157 LKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp CCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred hhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHHHH
Confidence 67899999999999988 588899999999999999999999999999988 999999999999999999999999
Q ss_pred HHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906 346 FTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY 395 (415)
Q Consensus 346 ~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G 395 (415)
++|++..|++++.+|.+| +|||++|++ .++.+++++|++++
T Consensus 233 ~~Ll~~~gad~~~~d~~g--~TpL~~A~~-------~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 233 GLLLAVPSCDISLTDRDG--STALMVALD-------AGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHTSTTCCTTCCCTTS--CCHHHHHHH-------HTCHHHHHHHHHHC
T ss_pred HHHHhcCCCCCcCcCCCC--CCHHHHHHH-------cCCHHHHHHHHhcc
Confidence 999985699999999999 999999999 68899999999874
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.4e-31 Score=209.83 Aligned_cols=170 Identities=21% Similarity=0.231 Sum_probs=154.5
Q ss_pred chhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcC
Q 042906 191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG 270 (415)
Q Consensus 191 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 270 (415)
+.+||+.|+..|+.+.+++++..+...++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence 34789999999999999999999988888999999999999999999999999999999887 67889999999999999
Q ss_pred CHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906 271 KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350 (415)
Q Consensus 271 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 350 (415)
+.+++++|++++++ ++.++..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 99999999999999 699999999999999999999999999999988 89999999999999999999999999998
Q ss_pred ccCcCccccccccccchh
Q 042906 351 HKSVNIRAKNRSARNNIA 368 (415)
Q Consensus 351 ~~g~~~~~~d~~g~~~t~ 368 (415)
+ |+++..++..| .||
T Consensus 157 ~-~~~~~~~~~~~--~~p 171 (172)
T 3v30_A 157 H-ILKLFQSNLVP--ADP 171 (172)
T ss_dssp H-HHHHSCC---------
T ss_pred H-HHHHhcccCCC--CCC
Confidence 6 99999999998 887
No 59
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=8.3e-34 Score=248.74 Aligned_cols=306 Identities=12% Similarity=0.067 Sum_probs=186.6
Q ss_pred cCChhHHHHHHhhccccccCCCCCCCHHHHHHH-hCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcH
Q 042906 11 NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVR-FRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNR 89 (415)
Q Consensus 11 ~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 89 (415)
.+..+.+..++....+++.. .+.+++++|.. .++.++++++++.+. +++||||+|+..|+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~----------------~~~T~Lh~Aa~~G~~ 105 (376)
T 2aja_A 44 LSYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGI----------------KSEVICFVAAITGCS 105 (376)
T ss_dssp SCHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTC----------------CHHHHHHHHHHHCCH
T ss_pred ccHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCC----------------CcCCHHHHHHHcCCH
Confidence 33344444444444333221 23456666665 467777777777632 234888888888888
Q ss_pred HHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCc--ccccccCCcHHHHHHHcC
Q 042906 90 AIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPS--SYINKAYQTPLSIAIDAR 167 (415)
Q Consensus 90 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~~~~~~l~~a~~~~ 167 (415)
++|++|+++|+.... ....+..|.||||+|+..|+.++|++|++.|++.. ...... .||||+|+..|
T Consensus 106 e~v~~Ll~~ga~~~~----------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G 174 (376)
T 2aja_A 106 SALDTLCLLLTSDEI----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG 174 (376)
T ss_dssp HHHHHHTTC--CCSS----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHcCCcHHH----------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC
Confidence 888888887762110 01123456778888888888888888888886421 122222 78888888888
Q ss_pred ChhHHHHHhhhCCCCccCCCCCcchhHHHHHH-HcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHH
Q 042906 168 LNDSACFIIDKSPESLNTTRLPDELTLLHFVV-MRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLE 246 (415)
Q Consensus 168 ~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 246 (415)
+.+++++|++.+.+......+..|.||||.|+ ..|+.+++++|++.+.. +.|||+.|+..|+.+++++|++
T Consensus 175 ~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~ 246 (376)
T 2aja_A 175 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIAR 246 (376)
T ss_dssp CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHh
Confidence 88888888877665432112256778888888 88888888888885432 6688999999999999999998
Q ss_pred hchhhhhccCCCCCCHHHHHHHcCCHHH------------HHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhh
Q 042906 247 ESKQLAYKRDCNGETPLHLAAENGKLKV------------LKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 314 (415)
Q Consensus 247 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~------------v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 314 (415)
+|++... .+ ++++.|+..|+.++ ++.|+..+.. +..+.+++|++
T Consensus 247 ~ga~~~~-~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~-------------------~~~~~~~~Ll~ 302 (376)
T 2aja_A 247 HVNRLKE-MH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE-------------------VLLDDIRFLLS 302 (376)
T ss_dssp HHHHHHH-HH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG-------------------GGHHHHHHHHT
T ss_pred cCccccc-cc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchh-------------------hHHHHHHHHHh
Confidence 8887653 22 36667777776653 3444444321 23566677776
Q ss_pred CCCccccc--ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHH
Q 042906 315 SPEMENLI--NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKA 390 (415)
Q Consensus 315 ~~~~~~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~ 390 (415)
.+...... ......+.|||++|+..|+.+++++|++. | .+++..| .|++++|.. .++.+++++
T Consensus 303 ~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~-~---~v~~~~~--~~~~~~~~~-------~~~~~~~~~ 367 (376)
T 2aja_A 303 IPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI-P---SVLALTK--ANNYYINET-------GGRLDLRAV 367 (376)
T ss_dssp STTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS-H---HHHHSCC---------------------------
T ss_pred ChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC-h---HHHHHHH--Hhccccccc-------cccccHHHH
Confidence 54322211 12234567899999999999999999975 2 6667778 899999888 466666554
No 60
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=4.1e-33 Score=244.37 Aligned_cols=283 Identities=11% Similarity=0.103 Sum_probs=194.4
Q ss_pred HHHHH-cCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHH
Q 042906 6 LEVLR-NGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAA 84 (415)
Q Consensus 6 ~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 84 (415)
+.|.. .++.+.+++++..|.+ +.||||+|++.|+.+++++|++.++.. ...+..+..|.||||+|+
T Consensus 70 ~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~------~~~~~~~~~~~tpL~~Aa 136 (376)
T 2aja_A 70 YYAHYNRNAKQLWSDAHKKGIK-------SEVICFVAAITGCSSALDTLCLLLTSD------EIVKVIQAENYQAFRLAA 136 (376)
T ss_dssp HHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHHHHHCCHHHHHHHTTC--CC------SSCC--CHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHHHHcCCHHHHHHHHHcCCcH------HHHHHhccCCCCHHHHHH
Confidence 34444 5788888888888754 359999999999999999999985410 011223445778999999
Q ss_pred HhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcc-cccccCCcHHHHH
Q 042906 85 RIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSS-YINKAYQTPLSIA 163 (415)
Q Consensus 85 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~~~l~~a 163 (415)
.+|+.++|++|+++|+++... .++..+ .||||+|+..|+.+++++|++.|+++.. ..+..|.||||+|
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~--------~i~~~~---~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~A 205 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMA--------MIQAEN---YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHH--------HHSHHH---HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccc--------ccCCCC---CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHH
Confidence 999999999999999753210 011222 8999999999999999999999987652 2677899999999
Q ss_pred H-HcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHH-
Q 042906 164 I-DARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMA- 241 (415)
Q Consensus 164 ~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~- 241 (415)
+ ..|+.+++++|++.+ ..+.||++.|+..|+.+++++|++.+.. ++..+ ++++.|+..|+.+++
T Consensus 206 a~~~G~~eiv~~Ll~~g---------a~~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 206 AVGRGHHNVINFLLDCP---------VMLAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVT 271 (376)
T ss_dssp HSTTCCHHHHHHHTTSH---------HHHHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSS
T ss_pred HHHCCCHHHHHHHHhCC---------CccchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhc
Confidence 9 999999999999744 2488999999999999999999988765 33333 467778888876643
Q ss_pred -----------HHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCc----cccccCCCCcHHHHHHhcCCH
Q 042906 242 -----------QRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDA----IEIRDNSDRSILHVAAKHGNW 306 (415)
Q Consensus 242 -----------~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~ 306 (415)
+.|+..+. .+..+.+++|++.+... .......+.|+||+|+..|+.
T Consensus 272 ~~~~~~~~~~~~~li~~~~-------------------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~ 332 (376)
T 2aja_A 272 KSECLQGFYMLRNLIRRND-------------------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 332 (376)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT
T ss_pred HHhhhhhHHHHHHHHHcch-------------------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcH
Confidence 33443321 12367778888653211 012234567899999999999
Q ss_pred HHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906 307 NIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (415)
Q Consensus 307 ~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 351 (415)
+++++|++.| ..++..++|++.+|...|+.++.+.-+.+
T Consensus 333 e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 333 GACALLLSIP------SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp THHHHHTTSH------HHHHSCC----------------------
T ss_pred HHHHHHHcCh------HHHHHHHHhccccccccccccHHHHHHHH
Confidence 9999999875 45778899999999999999998876654
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.2e-31 Score=209.46 Aligned_cols=157 Identities=24% Similarity=0.366 Sum_probs=133.4
Q ss_pred CCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC
Q 042906 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 304 (415)
Q Consensus 225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~ 304 (415)
..|||+.|+..|+.+++++|++.+.+++ ..+..|.||||+|+. ++.+++++|++++++ ++.++..|.||||+|+..+
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcC
Confidence 4578888888888888888888888776 577888899998888 889999999988888 5888888899999999999
Q ss_pred CHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC-ccccccccccchhHHHHHHhhhhhHHHH
Q 042906 305 NWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN-IRAKNRSARNNIALEIAEITRADGKEIQ 383 (415)
Q Consensus 305 ~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~-~~~~d~~g~~~t~l~~a~~~~~~~~~~~ 383 (415)
+.+++++|+++|.+ ++.+|..|+||||+|+..|+.+++++|+++ |++ ++.+|..| +|||++|++ .+
T Consensus 82 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g--~t~l~~A~~-------~~ 148 (162)
T 1ihb_A 82 FLDTLQTLLEFQAD---VNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKG--DTACDLARL-------YG 148 (162)
T ss_dssp CHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTS--CCHHHHHHH-------TT
T ss_pred CHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCC--CcHHHHHHH-------cC
Confidence 99999999988877 888888899999999999999999999976 676 68888888 899999988 47
Q ss_pred HHHHHHHHHHHHHH
Q 042906 384 KHLTLKALKTAYAK 397 (415)
Q Consensus 384 ~~~~~~~L~~~Ga~ 397 (415)
+.+++++|+++||+
T Consensus 149 ~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 149 RNEVVSLMQANGAG 162 (162)
T ss_dssp CHHHHHHHHHTC--
T ss_pred CHHHHHHHHHhCCC
Confidence 78899999998886
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=3.6e-31 Score=207.92 Aligned_cols=159 Identities=29% Similarity=0.381 Sum_probs=137.1
Q ss_pred ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA 301 (415)
Q Consensus 222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~ 301 (415)
...+.++++.|+..|+.+++++|+++|.+++ ..+..|.||||+|+..++.+++++|++++++ ++..+..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHH
Confidence 3445678999999999999999999888877 5788889999999999999999999999888 5888888999999999
Q ss_pred hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906 302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE 381 (415)
Q Consensus 302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~ 381 (415)
..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|+++ |++++.+|..| .|||++|++
T Consensus 89 ~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~t~l~~A~~------- 155 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFG--KTAFDISID------- 155 (169)
T ss_dssp HTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------
T ss_pred HcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHH-------
Confidence 99999999999998877 888888999999999999999999999986 89999999999 999999988
Q ss_pred HHHHHHHHHHHHHH
Q 042906 382 IQKHLTLKALKTAY 395 (415)
Q Consensus 382 ~~~~~~~~~L~~~G 395 (415)
.++.+++++|+++|
T Consensus 156 ~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 156 NGNEDLAEILQKLN 169 (169)
T ss_dssp TTCHHHHHHHHTC-
T ss_pred hCCHHHHHHHHHcC
Confidence 47788999998876
No 63
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.7e-31 Score=225.66 Aligned_cols=209 Identities=18% Similarity=0.244 Sum_probs=168.9
Q ss_pred cCCCChHHHHHHHcCCHHH----HHHHHhCCCCCcccc---cccCCcHHHHHH---HcCChhHHHHHhhhCCCCccCCCC
Q 042906 119 DIEGNTPLHNAVTNQHKRV----IRILVEKDSVPSSYI---NKAYQTPLSIAI---DARLNDSACFIIDKSPESLNTTRL 188 (415)
Q Consensus 119 ~~~g~t~l~~A~~~~~~~~----v~~Ll~~~~~~~~~~---~~~~~~~l~~a~---~~~~~~~~~~ll~~~~~~~~~~~~ 188 (415)
+..++|+||.|+..|+.+. +++|++.+.+..... +..|.||||+|+ ..|+.+++++|++.+.+....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~--- 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM--- 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence 5678999999999999985 444444887765221 256888888888 668888888888654321110
Q ss_pred CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccC------------
Q 042906 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRD------------ 256 (415)
Q Consensus 189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~------------ 256 (415)
..++. ...+..+..|.||||+|+..|+.+++++|+++|++++ ..+
T Consensus 79 -------------------~~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~ 135 (260)
T 3jxi_A 79 -------------------REFIN---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGG 135 (260)
T ss_dssp -------------------HHHHT---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCC
T ss_pred -------------------Hhhhc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccc
Confidence 11111 1134456689999999999999999999999999887 455
Q ss_pred --CCCCCHHHHHHHcCCHHHHHHHHH---hCCCccccccCCCCcHHHHHHhcCC---------HHHHHHHhhCCCccccc
Q 042906 257 --CNGETPLHLAAENGKLKVLKLLIN---KYPDAIEIRDNSDRSILHVAAKHGN---------WNIVSFILKSPEMENLI 322 (415)
Q Consensus 257 --~~g~t~L~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~ 322 (415)
..|.||||+|+..|+.+++++|++ .|++ ++.+|..|+||||+|+..++ .+++++|+++|++ +
T Consensus 136 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~---~ 211 (260)
T 3jxi_A 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK---L 211 (260)
T ss_dssp SCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH---H
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc---c
Confidence 579999999999999999999999 8888 69999999999999998887 7999999999877 5
Q ss_pred -------ccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccc
Q 042906 323 -------NLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRA 358 (415)
Q Consensus 323 -------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~ 358 (415)
+.+|..|+||||+|+..|+.+++++|+++ |.+...
T Consensus 212 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~ 253 (260)
T 3jxi_A 212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAA 253 (260)
T ss_dssp CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHHC
T ss_pred ccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccc
Confidence 67999999999999999999999999987 665543
No 64
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=4.8e-31 Score=209.36 Aligned_cols=163 Identities=23% Similarity=0.318 Sum_probs=139.5
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906 224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303 (415)
Q Consensus 224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 303 (415)
.+.++|+.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+..
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 4668899999999999999999886554446788889999999999999999999999888 588888999999999999
Q ss_pred CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHH
Q 042906 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQ 383 (415)
Q Consensus 304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~ 383 (415)
++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|+++ |++++.+|..| .|||++|++ .+
T Consensus 83 ~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~tpl~~A~~-------~~ 149 (179)
T 3f6q_A 83 GHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYG--EMPVDKAKA-------PL 149 (179)
T ss_dssp TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTS--CCGGGGSCH-------HH
T ss_pred CCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCC--CCcHHHHHH-------HH
Confidence 999999999998877 888889999999999999999999999986 89999999999 999999988 57
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042906 384 KHLTLKALKTAYAKRAL 400 (415)
Q Consensus 384 ~~~~~~~L~~~Ga~~~~ 400 (415)
+.+++++|+++||+++.
T Consensus 150 ~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 150 RELLRERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHhhcCccc
Confidence 88899999999988654
No 65
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=4.8e-31 Score=223.91 Aligned_cols=192 Identities=21% Similarity=0.299 Sum_probs=160.3
Q ss_pred cHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHH----
Q 042906 158 TPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAA---- 233 (415)
Q Consensus 158 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~---- 233 (415)
+++|.|+..+..+.++.+++...+......+..|.||||+|+..|+.+++++|++.+...++..+..|.||||+|+
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~ 157 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence 3444455555555555554433332233344677788888888888888888888887568888999999999999
Q ss_pred -hcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 042906 234 -ASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 312 (415)
Q Consensus 234 -~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 312 (415)
..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 158 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~L 235 (276)
T 4hbd_A 158 KTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLL 235 (276)
T ss_dssp CSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHH
Confidence 6688999999999997776 5788899999999999999999999999999 699999999999999999999999999
Q ss_pred hh-CCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCc
Q 042906 313 LK-SPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSV 354 (415)
Q Consensus 313 l~-~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~ 354 (415)
++ .|++ ++.+|..|+||||+|+..|+.+++++|+++.++
T Consensus 236 l~~~gad---~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 236 LAVPSCD---ISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HTSTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HhcCCCC---CcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 99 7877 899999999999999999999999999987654
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.5e-30 Score=203.17 Aligned_cols=156 Identities=23% Similarity=0.264 Sum_probs=145.2
Q ss_pred ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
+++|+.|+..|+.+.+++|++.|.+++..+..|.||||+|+. |+.+++++|++. +.+++.++..|.||||
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~ 75 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR---------GANPDLKDRTGFAVIH 75 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT---------TCCTTCCCTTSCCHHH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc---------CCCCCCCCCCCCCHHH
Confidence 578999999999999999999999999999999999999999 999999999998 5677888999999999
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|++.|++.....+..|.||++
T Consensus 76 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~ 142 (162)
T 1ihb_A 76 DAARAGFLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142 (162)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHH
Confidence 9999999999999999999877 568899999999999999999999999999876688999999999
Q ss_pred HHHHcCChhHHHHHhhhCC
Q 042906 162 IAIDARLNDSACFIIDKSP 180 (415)
Q Consensus 162 ~a~~~~~~~~~~~ll~~~~ 180 (415)
+|+..++.+++++|++++.
T Consensus 143 ~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 143 LARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp HHHHTTCHHHHHHHHHTC-
T ss_pred HHHHcCCHHHHHHHHHhCC
Confidence 9999999999999998765
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=2.3e-31 Score=208.35 Aligned_cols=160 Identities=24% Similarity=0.311 Sum_probs=132.1
Q ss_pred ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA 301 (415)
Q Consensus 222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~ 301 (415)
+..+.++|+.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHHH
Confidence 345668888888888888888888865544445677788899999988999999999988888 5888888999999999
Q ss_pred hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906 302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE 381 (415)
Q Consensus 302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~ 381 (415)
..++.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..| +|||++|.+
T Consensus 84 ~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~a~~------- 150 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDG--NTPLDLVKD------- 150 (165)
T ss_dssp HTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCTGGGSCT-------
T ss_pred HcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCC--CChhHhHhc-------
Confidence 99999999999988877 888888899999999999999999999976 89999999999 899998766
Q ss_pred HHHHHHHHHHHHHHH
Q 042906 382 IQKHLTLKALKTAYA 396 (415)
Q Consensus 382 ~~~~~~~~~L~~~Ga 396 (415)
++.+++++|++.||
T Consensus 151 -~~~~i~~~L~~~gA 164 (165)
T 3twr_A 151 -GDTDIQDLLRGDAA 164 (165)
T ss_dssp -TCHHHHHHHHTC--
T ss_pred -CChHHHHHHhhccc
Confidence 44578999988886
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=9.5e-30 Score=199.78 Aligned_cols=153 Identities=26% Similarity=0.356 Sum_probs=140.8
Q ss_pred hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI 82 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 82 (415)
+.|+.|++.|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++. +.+++..+..|.||||+
T Consensus 16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN---------GADVNAVDHAGMTPLRL 86 (169)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHH
T ss_pred chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCccCCCCCCHHHH
Confidence 579999999999999999999999999999999999999999999999999997 56678889999999999
Q ss_pred HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHH
Q 042906 83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSI 162 (415)
Q Consensus 83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~ 162 (415)
|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~ 152 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVN-------------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDI 152 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHH
Confidence 999999999999999998876 568889999999999999999999999999876 678889999999
Q ss_pred HHHcCChhHHHHHhhh
Q 042906 163 AIDARLNDSACFIIDK 178 (415)
Q Consensus 163 a~~~~~~~~~~~ll~~ 178 (415)
|+..++.+++++|++.
T Consensus 153 A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 153 SIDNGNEDLAEILQKL 168 (169)
T ss_dssp HHHTTCHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHHc
Confidence 9999999999999864
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=3.3e-30 Score=198.91 Aligned_cols=150 Identities=27% Similarity=0.329 Sum_probs=134.6
Q ss_pred CCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC
Q 042906 226 RNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 305 (415)
Q Consensus 226 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~ 305 (415)
.++|+.|+..|+.+++++|++.|.+.. .+..|.||||+|+..++.+++++|++.+++ ++.++..|+||||+|+..++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCh
Confidence 478999999999999999999988664 578899999999999999999999999988 58889999999999999999
Q ss_pred HHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHH
Q 042906 306 WNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKH 385 (415)
Q Consensus 306 ~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~ 385 (415)
.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..| .|||++|++ .++.
T Consensus 80 ~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~ 146 (153)
T 1awc_B 80 ANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFC--KTAFDISID-------NGNE 146 (153)
T ss_dssp HHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCH
T ss_pred HHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCC--CCHHHHHHH-------cCCH
Confidence 9999999999877 888999999999999999999999999986 99999999999 999999999 4777
Q ss_pred HHHHHH
Q 042906 386 LTLKAL 391 (415)
Q Consensus 386 ~~~~~L 391 (415)
+++++|
T Consensus 147 ~i~~~L 152 (153)
T 1awc_B 147 DLAEIL 152 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888877
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=2.1e-29 Score=194.36 Aligned_cols=150 Identities=27% Similarity=0.384 Sum_probs=139.3
Q ss_pred ChHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHH
Q 042906 2 DQELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLH 81 (415)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~ 81 (415)
.++|+.|++.|+.+.+++|++.|.+++ .+..|.||||+|+..|+.+++++|++. +.+++.++..|+||||
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~~~~g~t~L~ 72 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA---------GVSRDARTKVDRTPLH 72 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTT---------TCCTTCCCTTCCCHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCCCCCCCCCHHH
Confidence 468999999999999999999998876 578899999999999999999999997 5677889999999999
Q ss_pred HHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHH
Q 042906 82 IAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 82 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||++
T Consensus 73 ~A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~ 138 (153)
T 1awc_B 73 MAASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFD 138 (153)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence 9999999999999999999877 568899999999999999999999999999876 67889999999
Q ss_pred HHHHcCChhHHHHH
Q 042906 162 IAIDARLNDSACFI 175 (415)
Q Consensus 162 ~a~~~~~~~~~~~l 175 (415)
+|+..++.+++++|
T Consensus 139 ~A~~~~~~~i~~~L 152 (153)
T 1awc_B 139 ISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999886
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=6.2e-30 Score=202.94 Aligned_cols=169 Identities=18% Similarity=0.260 Sum_probs=157.2
Q ss_pred CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268 (415)
Q Consensus 189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 268 (415)
..+.++|+.|+..|+.+++++|++.++..++..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 3566889999999999999999999887789999999999999999999999999999999988 678999999999999
Q ss_pred cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348 (415)
Q Consensus 269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 348 (415)
.++.+++++|++++++ ++.+|..|.||||+|+..++.+++++|+++|++ ++.+|..|.|||++|+..++.+++++|
T Consensus 82 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999 699999999999999999999999999999988 899999999999999999999999999
Q ss_pred hhccCcCcccccccc
Q 042906 349 SRHKSVNIRAKNRSA 363 (415)
Q Consensus 349 l~~~g~~~~~~d~~g 363 (415)
++. |++++..+.++
T Consensus 158 ~~~-g~~~~~~~~~~ 171 (179)
T 3f6q_A 158 EKM-GQNLNRIPYKD 171 (179)
T ss_dssp HHT-TCCCSCBCCCC
T ss_pred HHh-hcCcccCCccc
Confidence 986 99999988776
No 72
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.7e-29 Score=202.96 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=144.3
Q ss_pred CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906 188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267 (415)
Q Consensus 188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 267 (415)
+..|.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..++.+++++|+++|++++ ..+..|.||||+|+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~ 109 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSI 109 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhccc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHH
Confidence 35677788888888888888888877654 67788889999999999999999999999999887 67889999999999
Q ss_pred HcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHH
Q 042906 268 ENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFT 347 (415)
Q Consensus 268 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 347 (415)
..++.+++++|++++++ ++.++..|.||||+|+..++.+++++|+++|++ ++.+|..|.|||++|+..|+.+++++
T Consensus 110 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~v~~ 185 (192)
T 2rfm_A 110 IFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGRQEVIKI 185 (192)
T ss_dssp HHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence 99999999999999999 599999999999999999999999999999988 89999999999999999999999999
Q ss_pred Hhhc
Q 042906 348 LSRH 351 (415)
Q Consensus 348 Ll~~ 351 (415)
|+++
T Consensus 186 Ll~~ 189 (192)
T 2rfm_A 186 FTEV 189 (192)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9986
No 73
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.9e-29 Score=197.88 Aligned_cols=161 Identities=19% Similarity=0.204 Sum_probs=149.0
Q ss_pred cchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHc
Q 042906 190 DELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAEN 269 (415)
Q Consensus 190 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~ 269 (415)
.+.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHc
Confidence 456899999999999999999988755 78889999999999999999999999999999887 5788999999999999
Q ss_pred CCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHh
Q 042906 270 GKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLS 349 (415)
Q Consensus 270 ~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 349 (415)
++.+++++|++++++ ++.++..|.||||+|+..++.+++++|+++|++ ++.+|..|+|||++|+..|+.+++++|+
T Consensus 80 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp TCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999999 599999999999999999999999999999988 8999999999999999999999999999
Q ss_pred hccCcCcc
Q 042906 350 RHKSVNIR 357 (415)
Q Consensus 350 ~~~g~~~~ 357 (415)
++ ++++.
T Consensus 156 ~~-~~~~~ 162 (167)
T 3v31_A 156 SH-LLKLL 162 (167)
T ss_dssp HH-HHHHC
T ss_pred HH-HHHHH
Confidence 86 55543
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=3.3e-29 Score=196.09 Aligned_cols=159 Identities=24% Similarity=0.321 Sum_probs=147.9
Q ss_pred CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268 (415)
Q Consensus 189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 268 (415)
..+.++|+.|+..|+.+++++|++..+...+..+..|.||||+|+..++.+++++|+++|.+++ ..+..|.||||+|+.
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 84 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNACS 84 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHH
Confidence 5788999999999999999999998877788888889999999999999999999999999987 688899999999999
Q ss_pred cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHH
Q 042906 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTL 348 (415)
Q Consensus 269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 348 (415)
.++.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|+|||++|.. ++.+++++|
T Consensus 85 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 85 YGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred cCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc-CChHHHHHH
Confidence 9999999999999999 599999999999999999999999999999988 89999999999999877 899999999
Q ss_pred hhccCc
Q 042906 349 SRHKSV 354 (415)
Q Consensus 349 l~~~g~ 354 (415)
+++ |+
T Consensus 160 ~~~-gA 164 (165)
T 3twr_A 160 RGD-AA 164 (165)
T ss_dssp HTC---
T ss_pred hhc-cc
Confidence 975 54
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.3e-28 Score=190.72 Aligned_cols=154 Identities=26% Similarity=0.340 Sum_probs=142.9
Q ss_pred chhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcC
Q 042906 191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENG 270 (415)
Q Consensus 191 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 270 (415)
+.++|+.|+..|+.+.+++|++..+..++..+..|.||||+ +..|+.+++++|+++|++++ ..+..|.||||+|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence 56899999999999999999998555688889999999999 99999999999999999887 68889999999999999
Q ss_pred CHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhh
Q 042906 271 KLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSR 350 (415)
Q Consensus 271 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 350 (415)
+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++. ++ ++.+|..|.||||+|+..|+.+++++|++
T Consensus 80 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 80 FLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred cHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999999999998 599999999999999999999999999998 65 89999999999999999999999999997
Q ss_pred c
Q 042906 351 H 351 (415)
Q Consensus 351 ~ 351 (415)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 5
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2.9e-29 Score=194.45 Aligned_cols=153 Identities=24% Similarity=0.287 Sum_probs=141.8
Q ss_pred CCCHHHHHHhcCCHHHHHHHHHhch-hhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906 225 QRNPLHYAAASGNVKMAQRLLEESK-QLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303 (415)
Q Consensus 225 ~~t~l~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 303 (415)
+.|+|+.|+..|+.+++++|++... +++ ..+..|.||||+ +..++.+++++|+++|++ ++.++..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPD-ALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTT-CCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcc-ccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHc
Confidence 4589999999999999999999932 444 678899999999 999999999999999999 599999999999999999
Q ss_pred CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHH
Q 042906 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQ 383 (415)
Q Consensus 304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~ 383 (415)
|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..| .|||++|++ .+
T Consensus 79 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g--~t~l~~A~~-------~~ 144 (156)
T 1bd8_A 79 GFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARG--LTPLELALQ-------RG 144 (156)
T ss_dssp TCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTS--CCHHHHHHH-------SC
T ss_pred CcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCC--CCHHHHHHH-------cC
Confidence 999999999999987 899999999999999999999999999986 9999999999 999999999 57
Q ss_pred HHHHHHHHHHH
Q 042906 384 KHLTLKALKTA 394 (415)
Q Consensus 384 ~~~~~~~L~~~ 394 (415)
+.+++++|+++
T Consensus 145 ~~~~v~~Ll~~ 155 (156)
T 1bd8_A 145 AQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHTT
T ss_pred cHHHHHHHHhh
Confidence 88899999863
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=7.3e-30 Score=212.18 Aligned_cols=164 Identities=18% Similarity=0.116 Sum_probs=118.4
Q ss_pred cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 042906 223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAK 302 (415)
Q Consensus 223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~ 302 (415)
..|.||||.|+..+..+.++.|+++|++++ .+..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 458899999999999999999999999887 356789999999999999999999999998 69999999999999999
Q ss_pred cCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccc-hhHHHH--HHhhhhh
Q 042906 303 HGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNN-IALEIA--EITRADG 379 (415)
Q Consensus 303 ~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~-t~l~~a--~~~~~~~ 379 (415)
.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.++..| . ||||+| +.
T Consensus 80 ~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~~--~~t~l~~a~~~~----- 148 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSD--MQTAADKCEEME----- 148 (239)
T ss_dssp HTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSS--CCCHHHHCCSSS-----
T ss_pred cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcceecCCC--CcchHHHHHHhh-----
Confidence 9999999999999887 899999999999999999999999999986 99999999888 6 999999 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcH
Q 042906 380 KEIQKHLTLKALKTAYAKRALSA 402 (415)
Q Consensus 380 ~~~~~~~~~~~L~~~Ga~~~~~~ 402 (415)
.++.+++++|+++||+++..+
T Consensus 149 --~g~~~~~~~Ll~~~a~~~~~~ 169 (239)
T 1ycs_B 149 --EGYTQCSQFLYGVQEKMGIMN 169 (239)
T ss_dssp --TTCCCHHHHHHHHHHHTTTTG
T ss_pred --hccHHHHHHHHHhhhcccccc
Confidence 356779999999999987653
No 78
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.95 E-value=5.3e-29 Score=197.22 Aligned_cols=164 Identities=17% Similarity=0.127 Sum_probs=141.9
Q ss_pred CCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH----HHHHHHHHhCCCccccccCCCCcHHHHH
Q 042906 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL----KVLKLLINKYPDAIEIRDNSDRSILHVA 300 (415)
Q Consensus 225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~l~~A 300 (415)
++++++.|++.|+.+.++.++..+.... .+..|.||||+|+..++. +++++|+++|++ ++.++..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 4578999999999999999988764432 236799999999999875 599999999999 699999999999999
Q ss_pred HhcCC------HHHHHHHhhCCCcccccccCCCCCC-cHHHHHHhcCC-----hHHHHHHhhccCcCccccccccccchh
Q 042906 301 AKHGN------WNIVSFILKSPEMENLINLVDRNGN-TPLHLAAMGLH-----SDVVFTLSRHKSVNIRAKNRSARNNIA 368 (415)
Q Consensus 301 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~g~-t~l~~A~~~~~-----~~~~~~Ll~~~g~~~~~~d~~g~~~t~ 368 (415)
+..++ .+++++|+++|++ +|.+|..|+ ||||+|+..+. .+++++|++..|++++.+|..| +||
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G--~Tp 157 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG--LTA 157 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTS--CCH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCC--CCH
Confidence 99886 6789999999988 999999999 99999999554 4689999984599999999999 999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHH
Q 042906 369 LEIAEITRADGKEIQKHLTLKALKTAYAKRALSAE 403 (415)
Q Consensus 369 l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~ 403 (415)
||+|++ .++.+++++|.++..+.+++++
T Consensus 158 L~~A~~-------~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 158 LEFVKR-------CQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp HHHHHT-------TTCHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHH-------cCCHHHHHHHHHHHHHHhcccC
Confidence 999999 5788899999999988776643
No 79
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.8e-30 Score=211.07 Aligned_cols=176 Identities=13% Similarity=0.147 Sum_probs=150.0
Q ss_pred CCcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHH
Q 042906 188 LPDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAA 267 (415)
Q Consensus 188 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 267 (415)
...+.++|+.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~tpLh~A~ 95 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAA 95 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHH
Confidence 35677889999999999999999987765 78888899999999999999999999999998887 57889999999999
Q ss_pred HcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHH--HhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHH
Q 042906 268 ENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVA--AKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDV 344 (415)
Q Consensus 268 ~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~ 344 (415)
..|+.+++++|++.|++ ++..+ ..|+||||+| +..++.+++++|++.|++ ++.+|..|.||++.++.....
T Consensus 96 ~~g~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~l~~~~~~~~~-- 169 (229)
T 2vge_A 96 SCNDTVICMALVQHGAA-IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFGD-- 169 (229)
T ss_dssp HTTCHHHHHHHHTTTCC-TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGGEEEESSCBCCSSTT--
T ss_pred HcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCCchHHHHHHhhcccc--
Confidence 99999999999999998 47765 6899999999 899999999999999887 888888899998865544433
Q ss_pred HHHHhhccCcC--ccccccccccchhHHHHHHh
Q 042906 345 VFTLSRHKSVN--IRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 345 ~~~Ll~~~g~~--~~~~d~~g~~~t~l~~a~~~ 375 (415)
++|++. |++ ++.+|..| +||||+|++.
T Consensus 170 -~~ll~~-ga~~~~~~~d~~G--~TpL~~A~~~ 198 (229)
T 2vge_A 170 -ELSFRE-GESVTVLRRDGPE--ETDWWWAALH 198 (229)
T ss_dssp -BCCBCT-TCEEEEEESSCTT--CSSEEEEEET
T ss_pred -ccCccc-cccccccccCCCc--ccHHHHHHHc
Confidence 566764 888 77888889 9999999873
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=9.6e-31 Score=215.23 Aligned_cols=143 Identities=19% Similarity=0.143 Sum_probs=114.4
Q ss_pred HHHHHhhccccccCC---CCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHH
Q 042906 17 IKQLALRQNIFSTSS---PGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVS 93 (415)
Q Consensus 17 v~~ll~~~~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 93 (415)
++.|++.|.+.+..+ .+|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.++++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~---------g~~~~~~d~~g~tpLh~A~~~g~~~~v~ 71 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE---------MNDPSQPNEEGITALHNAICGANYSIVD 71 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH---------SSCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc---------CCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 467888887766444 4567889999999999999999997 5677889999999999999999999999
Q ss_pred HHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHH--HHcCChhH
Q 042906 94 EIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIA--IDARLNDS 171 (415)
Q Consensus 94 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a--~~~~~~~~ 171 (415)
+|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+++....+..|.|||++| +..++.++
T Consensus 72 ~Ll~~ga~~n-------------~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~ 138 (229)
T 2vge_A 72 FLITAGANVN-------------SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADC 138 (229)
T ss_dssp HHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHH
T ss_pred HHHHCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHH
Confidence 9999999877 56889999999999999999999999999988755457888888888 77777777
Q ss_pred HHHHhhhCCC
Q 042906 172 ACFIIDKSPE 181 (415)
Q Consensus 172 ~~~ll~~~~~ 181 (415)
+++|++.+.+
T Consensus 139 v~~Ll~~ga~ 148 (229)
T 2vge_A 139 ATYLADVEQS 148 (229)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHcCCC
Confidence 7777765543
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=2.4e-28 Score=184.26 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=108.4
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCC-CCcH
Q 042906 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRN-GNTP 332 (415)
Q Consensus 254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-g~t~ 332 (415)
..+..|.||||+|+..++.+++++|++++++ ++.++..|+||||+|+. ++.+++++|+++|++ ++.+|.. |+||
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~g~t~ 81 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPATLTRP 81 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTTTBCH
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCCCCCH
Confidence 4677788888888888888888888888877 58888888888888888 888888888888777 7888888 8888
Q ss_pred HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906 333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK 397 (415)
Q Consensus 333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~ 397 (415)
||+|+..|+.+++++|+++ |++++.+|..| +||||+|++ .++.+++++|+++|||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g--~tpl~~A~~-------~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 82 VHDAAREGFLDTLVVLHRA-GARLDVCDAWG--RLPVDLAEE-------QGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHT-CCCCCCCSSSS--SCHHHHHHH-------HTCHHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHc-CCCCCccCCCC--CCHHHHHHH-------cCCHHHHHHHHHcCCC
Confidence 8888888888888888875 88888888888 888888888 5677888888888874
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=5.7e-28 Score=186.87 Aligned_cols=147 Identities=22% Similarity=0.214 Sum_probs=118.0
Q ss_pred cccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCc-HH
Q 042906 219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRS-IL 297 (415)
Q Consensus 219 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-~l 297 (415)
...+..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+ .++.+++++|+++|++ ++.++..|+| ||
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL 82 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPV 82 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence 3456678999999999999999999999999887 57889999999985 9999999999999999 6999999999 99
Q ss_pred HHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374 (415)
Q Consensus 298 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~ 374 (415)
|+|+..++.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..| .||.+.+.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~~~~~~~ 153 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHAR--IDAAEGPSD 153 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C---------------------
T ss_pred HHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCc--CcccccCCC
Confidence 999999999999999999988 899999999999999999999999999986 99999999999 999886654
No 83
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=4.6e-28 Score=201.30 Aligned_cols=176 Identities=15% Similarity=0.085 Sum_probs=128.8
Q ss_pred CcchhHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHH
Q 042906 189 PDELTLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAE 268 (415)
Q Consensus 189 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 268 (415)
..|.|||+.|+..++.+.++.|++.+.. ++. +..+.||||.|+..|+.+++++|++.|++++ ..+..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 4578899999999999999999988865 443 3568899999999999999999999999877 678999999999999
Q ss_pred cCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCC-cHHHHH--HhcCChHHH
Q 042906 269 NGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGN-TPLHLA--AMGLHSDVV 345 (415)
Q Consensus 269 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~ 345 (415)
.|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.++..|. ||||+| +..|+.+++
T Consensus 80 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHH
Confidence 9999999999999999 699999999999999999999999999999988 888888777 999999 788999999
Q ss_pred HHHhhccCcCcccccc---------ccccchhHHHHHH
Q 042906 346 FTLSRHKSVNIRAKNR---------SARNNIALEIAEI 374 (415)
Q Consensus 346 ~~Ll~~~g~~~~~~d~---------~g~~~t~l~~a~~ 374 (415)
++|+++ |++++..+. .+ .|+++++.+
T Consensus 156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~--~~~~eLa~~ 190 (239)
T 1ycs_B 156 QFLYGV-QEKMGIMNKGVIYALWDYEP--QNDDELPMK 190 (239)
T ss_dssp HHHHHH-HHHTTTTGGGEEEESSCBCC--SSTTBCCBC
T ss_pred HHHHHh-hhcccccccceEEEEeccCC--CCCCccccc
Confidence 999986 899888744 45 666666554
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=5.7e-28 Score=186.84 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=118.8
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCc-H
Q 042906 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNT-P 332 (415)
Q Consensus 254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t-~ 332 (415)
..+..|.||||+|+..|+.+++++|++++++ ++..+..|+||||+|+ .++.+++++|++.|++ ++.+|..|+| |
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---~~~~d~~g~ttp 81 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLTRP 81 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCCCH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---CCCcCCCCCcHH
Confidence 3567899999999999999999999999998 6999999999999985 9999999999999987 9999999999 9
Q ss_pred HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhh
Q 042906 333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEELQQKRQVS 412 (415)
Q Consensus 333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~~~~~~~~~ 412 (415)
||+|+..|+.+++++|+++ |++++.+|..| +||||+|++ .++.+++++|+++||+++..+..+..+.+..
T Consensus 82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g--~tpl~~A~~-------~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRA-GARLDVRDAWG--RLPVDLAEE-------LGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHH-TCCSSCCCTTC--CCHHHHHHH-------HTCHHHHHHHSSCC-----------------
T ss_pred HHHHHHCCCHHHHHHHHHc-CCCCcccCCCC--CCHHHHHHH-------hCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999999999999999986 99999999999 999999999 5788999999999999999988888777643
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=3.4e-27 Score=177.96 Aligned_cols=132 Identities=23% Similarity=0.266 Sum_probs=124.6
Q ss_pred hhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCC-CCc
Q 042906 217 LIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNS-DRS 295 (415)
Q Consensus 217 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-g~t 295 (415)
.++..+..|.||||+|+..|+.+++++|+++|.+++ ..+..|.||||+|+. ++.+++++|++++++ ++.++.. |+|
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t 80 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTR 80 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBC
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCC
Confidence 467788899999999999999999999999999887 678999999999999 999999999999999 5999999 999
Q ss_pred HHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906 296 ILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (415)
Q Consensus 296 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~ 355 (415)
|||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 99999999999999999999988 899999999999999999999999999986 775
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=1.7e-26 Score=172.06 Aligned_cols=126 Identities=39% Similarity=0.561 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHH
Q 042906 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337 (415)
Q Consensus 258 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~ 337 (415)
+|.||||.|+..++.+++++|++++++ ++..+..|.||||+|+..++.+++++|++.|.+ ++.++..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCcHHHHHH
Confidence 367777777777777777777777777 477777777777777777777777777777766 6777777777777777
Q ss_pred hcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906 338 MGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK 397 (415)
Q Consensus 338 ~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~ 397 (415)
..++.+++++|+++ |++++.+|..| .|||++|++ .+..+++++|+++||+
T Consensus 77 ~~~~~~~~~~Ll~~-g~~~~~~~~~g--~t~l~~A~~-------~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEA-GADVNAKDKNG--RTPLHLAAR-------NGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHTCC
T ss_pred HcChHHHHHHHHHc-CCCCcccCCCC--CCHHHHHHH-------cCcHHHHHHHHHcCCC
Confidence 77777777777765 77777777777 777777777 4667777777777764
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=3.6e-27 Score=186.70 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=141.3
Q ss_pred chhHHHHHHHcCCHHHHHHHHhcChhhhcccc-cCCCCHHHHHHhcCCH----HHHHHHHHhchhhhhccCCCCCCHHHH
Q 042906 191 ELTLLHFVVMRQNYDIMVKILGTNKELIDRLD-WHQRNPLHYAAASGNV----KMAQRLLEESKQLAYKRDCNGETPLHL 265 (415)
Q Consensus 191 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~t~L~~ 265 (415)
++++++.|+..|+.+.++.++..+. +..+ ..|.||||+|+..++. +++++|+++|++++ .++..|.||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHH
Confidence 4578999999999999998887663 3334 6799999999999975 59999999999998 688999999999
Q ss_pred HHHcCC------HHHHHHHHHhCCCccccccCCCC-cHHHHHHhcC-----CHHHHHHHhh-CCCcccccccCCCCCCcH
Q 042906 266 AAENGK------LKVLKLLINKYPDAIEIRDNSDR-SILHVAAKHG-----NWNIVSFILK-SPEMENLINLVDRNGNTP 332 (415)
Q Consensus 266 A~~~~~------~~~v~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~g~t~ 332 (415)
|+..++ .+++++|+++|++ ++.+|..|+ ||||+|+..+ ..+++++|++ .|++ ++.+|..|+||
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~Tp 157 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTA 157 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCH
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCH
Confidence 999887 6889999999999 699999999 9999999944 4569999999 8988 99999999999
Q ss_pred HHHHHhcCChHHHHHHhhccCcCccccc
Q 042906 333 LHLAAMGLHSDVVFTLSRHKSVNIRAKN 360 (415)
Q Consensus 333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d 360 (415)
||+|+..++.+++++|++. ..+.+.++
T Consensus 158 L~~A~~~~~~~~v~~L~~~-~~~~~~~~ 184 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDY-IKKYNLKE 184 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred HHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence 9999999999999999975 56666655
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=2.2e-26 Score=173.45 Aligned_cols=126 Identities=26% Similarity=0.328 Sum_probs=89.0
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHH
Q 042906 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL 335 (415)
Q Consensus 256 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~ 335 (415)
...+.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|.||||+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAVDAIGFTPLHL 86 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHH
Confidence 34456777777777777777777777766 467777777777777777777777777777665 66777777777777
Q ss_pred HHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 042906 336 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAY 395 (415)
Q Consensus 336 A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~G 395 (415)
|+..++.+++++|+++ |++++.+|..| +|||++|++ .++.+++++|+++|
T Consensus 87 A~~~~~~~~v~~Ll~~-g~~~~~~~~~g--~tpl~~A~~-------~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKH-GADVNAQDKFG--KTAFDISIG-------NGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHc-CCCCcCcCCCC--CCHHHHHHH-------CCCHHHHHHHHHcC
Confidence 7777777777777765 77777777777 777777777 35666777777665
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=2.2e-25 Score=167.97 Aligned_cols=121 Identities=24% Similarity=0.336 Sum_probs=113.8
Q ss_pred hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI 82 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 82 (415)
++|+.|++.|+.++++.|++.|.+++..+..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+
T Consensus 16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN---------GADVNAVDAIGFTPLHL 86 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCcCCCCCCCHHHH
Confidence 679999999999999999999999999999999999999999999999999997 56788899999999999
Q ss_pred HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC
Q 042906 83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD 145 (415)
Q Consensus 83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 145 (415)
|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|++.|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~-------------~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVN-------------AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCCc-------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999999999999876 56889999999999999999999999875
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=3.7e-25 Score=164.74 Aligned_cols=126 Identities=41% Similarity=0.655 Sum_probs=119.1
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 042906 224 HQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 303 (415)
Q Consensus 224 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 303 (415)
+|.||||.|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++.+++ ++.++..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence 47899999999999999999999998887 5788999999999999999999999999998 599999999999999999
Q ss_pred CCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906 304 GNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (415)
Q Consensus 304 ~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~ 355 (415)
++.+++++|+++|.+ ++.+|..|.|||++|+..++.+++++|+++ |+|
T Consensus 79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence 999999999999887 889999999999999999999999999986 875
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=3.7e-26 Score=172.60 Aligned_cols=131 Identities=23% Similarity=0.301 Sum_probs=116.5
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL 333 (415)
Q Consensus 254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l 333 (415)
.++..|.||||+|+..++.+++++|++.+++ ++.++..|+||||+|+..++.+++++|+++|++ ++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence 4688999999999999999999999999998 599999999999999999999999999999887 899999999999
Q ss_pred HHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 042906 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKR 398 (415)
Q Consensus 334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~ 398 (415)
|+|+..++.+++++|+++ |++++.+|..| .|||++|.. .+..+++++|.+.++..
T Consensus 81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~tpl~~A~~-------~~~~~~l~~l~~~~~s~ 135 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSY-GASRNAVNIFG--LRPVDYTDD-------ESMKSLLLLPEKNESSS 135 (137)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCGGGGCCC-------HHHHHHHSCC-------
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCCCCCC--CCHHHHHhh-------ccHHHHHhhccccccCC
Confidence 999999999999999986 99999999999 999999998 67888999888877653
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=6.6e-25 Score=180.35 Aligned_cols=136 Identities=25% Similarity=0.275 Sum_probs=111.1
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhC-CCcccccccCCCCCCcHH
Q 042906 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLVDRNGNTPL 333 (415)
Q Consensus 255 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~g~t~l 333 (415)
.+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++. |++ ++.+|..|+|||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~tpL 144 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDTAL 144 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCCHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCCHH
Confidence 455788999999999999999999999988 588999999999999999999999999998 777 899999999999
Q ss_pred HHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcHHH
Q 042906 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAKRALSAEE 404 (415)
Q Consensus 334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~~~~~~~~ 404 (415)
|+|+..|+.+++++|+++ |++++.+|.+| +|||++|+. .+..++++.|+..||...+.+.+
T Consensus 145 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~-------~~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAK-GARTDLRNIEK--KLAFDMATN-------AACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp HHHHHHTCHHHHHHHHHH-TCCSCCCCTTS--CCHHHHCCS-------HHHHHHHC---------------
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCccccCCC--CCHHHHhcc-------hhHHHHHHHHhccchhhhccchh
Confidence 999999999999999986 99999999999 999999998 68889999999999998776543
No 93
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.91 E-value=1.6e-24 Score=160.28 Aligned_cols=112 Identities=26% Similarity=0.262 Sum_probs=103.1
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHH
Q 042906 256 DCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHL 335 (415)
Q Consensus 256 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~ 335 (415)
+..|.||||+|+..++.+++++|++.+++ ++.++..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHH
Confidence 45678999999999999999999999988 599999999999999999999999999999887 89999999999999
Q ss_pred HHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906 336 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374 (415)
Q Consensus 336 A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~ 374 (415)
|+..++.+++++|+++ |++++.+|.+| +|||++|..
T Consensus 80 A~~~~~~~~v~~Ll~~-ga~~~~~~~~g--~t~l~~A~~ 115 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSK-GADKTVKGPDG--LTAFEATDN 115 (123)
T ss_dssp HHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHCCC
T ss_pred HHHcCCHHHHHHHHHc-CCCCCCcCCCC--CCHHHHhCC
Confidence 9999999999999986 99999999999 999999966
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=8.2e-25 Score=165.20 Aligned_cols=130 Identities=21% Similarity=0.239 Sum_probs=114.4
Q ss_pred cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhcccccc
Q 042906 25 NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQ 104 (415)
Q Consensus 25 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 104 (415)
.++ .++..|.||||+|+..|+.+++++|++. +.+++.++..|+||||+|+..|+.+++++|+++|++++
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~- 70 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQN---------GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN- 70 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHT---------TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHc---------CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-
Confidence 345 5778999999999999999999999997 56778899999999999999999999999999999876
Q ss_pred CCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhh
Q 042906 105 AGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDK 178 (415)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 178 (415)
.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++|+..+..+++.++.+.
T Consensus 71 ------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 71 ------------TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp ------------CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred ------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 568889999999999999999999999999876 7899999999999988888888776644
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=184.78 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=108.0
Q ss_pred hHHHHHHHcCChhHHHHHHhhcccccc------CCCCCCCHHHHHHHh---CCHHHHHHHHhccchHHHHHHhHhhhcCC
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFST------SSPGGNTVLHMAVRF---RNQQVIREILRQQNFIALRLHYSLLRQKN 73 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 73 (415)
.+|+.|+..|+++.++.|++.|.+++. .+..|.||||+|+.. |+.+++++|++. +++++.+|
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~---------gadvn~~d 223 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN---------GGHLDAKA 223 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH---------SSCTTCCC
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc---------CCCCCCCC
Confidence 458888888888888888888888877 577888888888887 788888888887 56677788
Q ss_pred CCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCccccc
Q 042906 74 LMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153 (415)
Q Consensus 74 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 153 (415)
..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..++.+++++|++.|++
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-------------~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------ 284 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRALVG-------------TVNEAGETALDIARKKHHKECEELLEQAQAG------ 284 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------
Confidence 888888888888888888888888888776 5678888888888888888888888887754
Q ss_pred ccCCcHHHHHHHcCC
Q 042906 154 KAYQTPLSIAIDARL 168 (415)
Q Consensus 154 ~~~~~~l~~a~~~~~ 168 (415)
.|.||||+|+..|+
T Consensus 285 -~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 285 -TFAFPLHVDYSWVI 298 (301)
T ss_dssp -TTSSCCC-------
T ss_pred -CCCChhHHHHhcCC
Confidence 46788888887664
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.91 E-value=8.3e-24 Score=175.92 Aligned_cols=142 Identities=24% Similarity=0.265 Sum_probs=115.0
Q ss_pred cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHH
Q 042906 223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAA 301 (415)
Q Consensus 223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~ 301 (415)
..|.||||.|+..|+.+++++|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++ ++..+ ..|+||||+|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence 346788888888888888888888 77666 5788888888888888888888888888888 47777 77888888888
Q ss_pred hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906 302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE 381 (415)
Q Consensus 302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~ 381 (415)
..|+.+++++|+++|++ ++.+|..|+||||+|+..++ ...+ .|||++|++
T Consensus 120 ~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~~------------------~~~~--~~~l~~a~~------- 169 (244)
T 3ui2_A 120 GYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------------------TTPK--GNPMQFGRR------- 169 (244)
T ss_dssp HTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHHT------------------TCCC--SSHHHHHHH-------
T ss_pred HcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHHh------------------ccCC--CCHHHHHHH-------
Confidence 88888888888888877 88888888888888875222 1346 888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 042906 382 IQKHLTLKALKTAYAK 397 (415)
Q Consensus 382 ~~~~~~~~~L~~~Ga~ 397 (415)
.++.+++++|++++.+
T Consensus 170 ~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 170 IGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHHHEE
T ss_pred cChHHHHHHHHHhccc
Confidence 5888899999887654
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=3e-24 Score=170.56 Aligned_cols=138 Identities=25% Similarity=0.281 Sum_probs=95.0
Q ss_pred cCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccccc-CCCCcHHHHHH
Q 042906 223 WHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRD-NSDRSILHVAA 301 (415)
Q Consensus 223 ~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~A~ 301 (415)
..|.||||.|+..|+.++++.|++ +.+++ ..+..|.||||+|+..++.+++++|+++|++ ++.++ ..|+||||+|+
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHH
Confidence 345677777777777777777777 66555 4666777777777777777777777777776 46665 66777777777
Q ss_pred hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHH
Q 042906 302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKE 381 (415)
Q Consensus 302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~ 381 (415)
..++.+++++|+++|++ ++.+|..|+||||+|+..++. ..+ .+||++|++
T Consensus 119 ~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~------------------~~~--~~~l~~a~~------- 168 (183)
T 3deo_A 119 GYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKT------------------TPK--GNPMQFGRR------- 168 (183)
T ss_dssp HTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHHT------------------CCC--CSHHHHHHH-------
T ss_pred hcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhccC------------------ccc--ccHHHHHHH-------
Confidence 77777777777777666 667777777777777653322 234 677777777
Q ss_pred HHHHHHHHHHHH
Q 042906 382 IQKHLTLKALKT 393 (415)
Q Consensus 382 ~~~~~~~~~L~~ 393 (415)
.+..+++++|.+
T Consensus 169 ~~~~~i~~~L~~ 180 (183)
T 3deo_A 169 IGLEKVINVLEG 180 (183)
T ss_dssp HHHHHHHHHHHT
T ss_pred cCHHHHHHHHHH
Confidence 567777777754
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=3.1e-23 Score=164.70 Aligned_cols=137 Identities=19% Similarity=0.142 Sum_probs=84.7
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906 33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE 112 (415)
Q Consensus 33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (415)
.|.||||+|+..|+.+++++|++ + .+++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~---------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------- 103 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-D---------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--------- 103 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-T---------SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-c---------CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence 45666666666666666666666 2 2345566666666666666666666666666666554
Q ss_pred hhhhccc-CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906 113 SLFRMRD-IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191 (415)
Q Consensus 113 ~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 191 (415)
.++ ..|.||||+|+..++.+++++|++.|+++. ..+..|.||+++|+..++.+ .+
T Consensus 104 ----~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~-------------------~~ 159 (183)
T 3deo_A 104 ----HRDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKTT-------------------PK 159 (183)
T ss_dssp ----CCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHHHTC-------------------CC
T ss_pred ----cCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc-CCCCCCCCHHHHHHHhccCc-------------------cc
Confidence 233 556666666666666666666666666554 45666666666666544331 22
Q ss_pred hhHHHHHHHcCCHHHHHHHHh
Q 042906 192 LTLLHFVVMRQNYDIMVKILG 212 (415)
Q Consensus 192 ~~~l~~a~~~~~~~~~~~ll~ 212 (415)
.+++++++..|..++++.|.+
T Consensus 160 ~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 160 GNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp CSHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHcCHHHHHHHHHH
Confidence 356666666666666666654
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=3.7e-24 Score=175.86 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=115.7
Q ss_pred cccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccccccCCCCcHH
Q 042906 219 DRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINK-YPDAIEIRDNSDRSIL 297 (415)
Q Consensus 219 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l 297 (415)
+..+..|.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..++.+++++|++. +++ ++.+|..|+|||
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tpL 144 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTAL 144 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCHH
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCHH
Confidence 3346678899999999999999999999999887 6889999999999999999999999999 777 699999999999
Q ss_pred HHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccc
Q 042906 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 363 (415)
Q Consensus 298 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g 363 (415)
|+|+..|+.+++++|+++|++ ++.+|..|+|||++|+..++.++++.|+.. |++.+.++.+|
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~ 206 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED 206 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence 999999999999999999988 899999999999999999999999999986 89998888776
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=179.55 Aligned_cols=138 Identities=17% Similarity=0.236 Sum_probs=121.2
Q ss_pred CCCHHHHHHhcCCHHHHHHHHHhchhhhhc-----cCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcH
Q 042906 225 QRNPLHYAAASGNVKMAQRLLEESKQLAYK-----RDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSI 296 (415)
Q Consensus 225 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~ 296 (415)
..++|+.|+..++.+.++.|++.|.+++.. .+..|.||||+|+.. ++.+++++|+++|++ ++.+|..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence 346799999999999999999999887732 578899999999997 899999999999998 69999999999
Q ss_pred HHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHh
Q 042906 297 LHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 297 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++ |++ .| .||||+|+++
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g--~tpLh~A~~~ 296 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TF--AFPLHVDYSW 296 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TT--SSCCC-----
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CC--CChhHHHHhc
Confidence 9999999999999999999988 899999999999999999999999999986 765 67 9999999984
No 101
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=1.7e-23 Score=154.70 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=103.0
Q ss_pred ccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 042906 222 DWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAA 301 (415)
Q Consensus 222 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~ 301 (415)
+..+.||||+|+..|+.+++++|++.+.+++ ..+..|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence 3457799999999999999999999998877 6788999999999999999999999999999 6999999999999999
Q ss_pred hcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcC
Q 042906 302 KHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGL 340 (415)
Q Consensus 302 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~ 340 (415)
..++.+++++|+++|++ ++.+|..|+||||+|...+
T Consensus 82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCCHH
T ss_pred HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCCHH
Confidence 99999999999999888 8999999999999994433
No 102
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=5.4e-23 Score=171.00 Aligned_cols=138 Identities=19% Similarity=0.141 Sum_probs=100.2
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906 33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE 112 (415)
Q Consensus 33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (415)
.|.||||+|+..|+.+++++|++ + .+++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~---------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--------- 104 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-D---------RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD--------- 104 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-T---------CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-C---------CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC---------
Confidence 46778888888888888877777 3 3456677777788888888888888888887777765
Q ss_pred hhhhccc-CCCChHHHHHHHcCCHHHHHHHHhCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcc
Q 042906 113 SLFRMRD-IEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDE 191 (415)
Q Consensus 113 ~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 191 (415)
.++ ..|.||||+|+..|+.+++++|++.|+++. ..+..|.||+|+|+..+.. ..+
T Consensus 105 ----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~-------------------~~~ 160 (244)
T 3ui2_A 105 ----HRDMRGGLTALHMAAGYVRPEVVEALVELGADIE-VEDERGLTALELAREILKT-------------------TPK 160 (244)
T ss_dssp ----CCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHHTT-------------------CCC
T ss_pred ----cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHHHhc-------------------cCC
Confidence 234 567788888888788888888887777765 5677777888777754333 234
Q ss_pred hhHHHHHHHcCCHHHHHHHHhc
Q 042906 192 LTLLHFVVMRQNYDIMVKILGT 213 (415)
Q Consensus 192 ~~~l~~a~~~~~~~~~~~ll~~ 213 (415)
.++|++|+..|+.+++++|++.
T Consensus 161 ~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 161 GNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcChHHHHHHHHHh
Confidence 5778888888877777777764
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=4.1e-23 Score=174.61 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=70.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCc-----cccccCCCCcHHHHHHhc---CCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906 262 PLHLAAENGKLKVLKLLINKYPDA-----IEIRDNSDRSILHVAAKH---GNWNIVSFILKSPEMENLINLVDRNGNTPL 333 (415)
Q Consensus 262 ~L~~A~~~~~~~~v~~Ll~~~~~~-----~~~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l 333 (415)
+|+.|+..++.+.++.+++.|++. ++..+..|+||||+|+.. ++.+++++|+++|++ ++.+|..|+|||
T Consensus 133 ~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g~TpL 209 (278)
T 1dcq_A 133 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCCHH
T ss_pred hhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCCCCHH
Confidence 455555555555555555555442 122345556666666655 556666666666555 555666666666
Q ss_pred HHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK 397 (415)
Q Consensus 334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~ 397 (415)
|+|+..|+.+++++|+++ |++++.+|.+| +||||+|++ .++.+++++|+++||+
T Consensus 210 h~A~~~g~~~~v~~Ll~~-gad~~~~d~~g--~tpL~~A~~-------~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRG-KASIEIANESG--ETPLDIAKR-------LKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCccCCC--CCHHHHHHH-------cCCHHHHHHHHHcCCC
Confidence 666666666666666653 56666666666 666666665 3455566666666654
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=2.3e-22 Score=170.06 Aligned_cols=124 Identities=19% Similarity=0.275 Sum_probs=107.4
Q ss_pred CHHHHHHhcCCHHHHHHHHHhchhhhh-----ccCCCCCCHHHHHHHc---CCHHHHHHHHHhCCCccccccCCCCcHHH
Q 042906 227 NPLHYAAASGNVKMAQRLLEESKQLAY-----KRDCNGETPLHLAAEN---GKLKVLKLLINKYPDAIEIRDNSDRSILH 298 (415)
Q Consensus 227 t~l~~a~~~~~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~ 298 (415)
++|+.|+..++.+.++.+++.|.+... ..+..|.||||+|+.. ++.+++++|+++|++ ++.+|..|+||||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh 210 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHH
Confidence 578888888888888888888877542 2367789999999998 889999999999998 5899999999999
Q ss_pred HHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcC
Q 042906 299 VAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVN 355 (415)
Q Consensus 299 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~ 355 (415)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++
T Consensus 211 ~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~ 263 (278)
T 1dcq_A 211 YCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQA-LSG 263 (278)
T ss_dssp HHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTT
T ss_pred HHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 99999999999999999887 889999999999999999999999999986 654
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=2.1e-22 Score=185.04 Aligned_cols=134 Identities=22% Similarity=0.218 Sum_probs=115.1
Q ss_pred hHHHHHHHcCChhHHHHHHhhccccccC------CCCCCCHHHHHHH---hCCHHHHHHHHhccchHHHHHHhHhhhcCC
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFSTS------SPGGNTVLHMAVR---FRNQQVIREILRQQNFIALRLHYSLLRQKN 73 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 73 (415)
..|+.|+..|+++.++.|++.|++++.. +..|.||||+||. .|+.+++++|++. +++++.+|
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~---------ga~vn~~d 204 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN---------GGHLDAKA 204 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH---------SCCTTCCC
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc---------CCCCCccC
Confidence 4699999999999999999999999877 8899999999977 8999999999997 67788999
Q ss_pred CCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCCCccccc
Q 042906 74 LMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSVPSSYIN 153 (415)
Q Consensus 74 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 153 (415)
..|+||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|++.|+++..
T Consensus 205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-------------~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~--- 268 (497)
T 3lvq_E 205 ADGNTALHYAALYNQPDCLKLLLKGRALVG-------------TVNEAGETALDIARKKHHKECEELLEQAQAGTFA--- 268 (497)
T ss_dssp SSSCCHHHHHTTTTCHHHHHHHHHTCCCCS-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC---
Confidence 999999999999999999999999999987 5789999999999999999999999999998763
Q ss_pred ccCCcHHHHHHH
Q 042906 154 KAYQTPLSIAID 165 (415)
Q Consensus 154 ~~~~~~l~~a~~ 165 (415)
+|+|.+..
T Consensus 269 ----~~~h~~~~ 276 (497)
T 3lvq_E 269 ----FPLHVDYS 276 (497)
T ss_dssp ------------
T ss_pred ----Ccceeecc
Confidence 57776543
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.87 E-value=1.1e-22 Score=186.79 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=115.3
Q ss_pred CCHHHHHHhcCCHHHHHHHHHhchhhhhc-----cCCCCCCHHHHHHH---cCCHHHHHHHHHhCCCccccccCCCCcHH
Q 042906 226 RNPLHYAAASGNVKMAQRLLEESKQLAYK-----RDCNGETPLHLAAE---NGKLKVLKLLINKYPDAIEIRDNSDRSIL 297 (415)
Q Consensus 226 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~---~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l 297 (415)
.+.|+.|+..|+.+.++.|++.|++++.. .+..|.||||+|+. .|+.+++++|+++|++ ++.+|..|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcHH
Confidence 36799999999999999999999987632 27789999999977 8999999999999999 699999999999
Q ss_pred HHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHH
Q 042906 298 HVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEI 374 (415)
Q Consensus 298 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~ 374 (415)
|+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++. ||+|.+..
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~--------~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAGTFA--------FPLHVDYS 276 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC---CSCCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC--------------------
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCC--------Ccceeecc
Confidence 999999999999999999988 999999999999999999999999999986 999885 46666555
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=5.3e-22 Score=138.54 Aligned_cols=93 Identities=34% Similarity=0.509 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhccccccCCCcchhh
Q 042906 33 GGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVPAVNQAGPLPVLE 112 (415)
Q Consensus 33 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 112 (415)
+|+||||+|+..|+.+++++|++. +++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~---------g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--------- 62 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA---------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN--------- 62 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT---------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT---------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc---------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence 489999999999999999999997 57788999999999999999999999999999999877
Q ss_pred hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCCC
Q 042906 113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDSV 147 (415)
Q Consensus 113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 147 (415)
.+|..|.||||+|+..++.+++++|++.|++
T Consensus 63 ----~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 63 ----AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ----ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5788999999999999999999999999874
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=6.8e-22 Score=172.60 Aligned_cols=146 Identities=20% Similarity=0.232 Sum_probs=116.7
Q ss_pred cCCCCHHHHHHhc-CCHHHHHHHHHhchhhhhccC--CCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 042906 223 WHQRNPLHYAAAS-GNVKMAQRLLEESKQLAYKRD--CNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV 299 (415)
Q Consensus 223 ~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 299 (415)
..+.|+||.|+.. ++.++++.|+++|++++ ..+ ..|.||||+|+..++.+++++|+++|++ ++..|..|+||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 3456899999999 99999999999999988 455 7899999999999999999999999999 69999999999999
Q ss_pred HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhcc--CcCccccccccccchhHHHHHHh
Q 042906 300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHK--SVNIRAKNRSARNNIALEIAEIT 375 (415)
Q Consensus 300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~--g~~~~~~d~~g~~~t~l~~a~~~ 375 (415)
|+..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|+... +++....+..+ .|+++++...
T Consensus 275 A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~--~t~l~i~~~~ 347 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGD--ETYLDIFRDF 347 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred HHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCC--CCHHHHHHHH
Confidence 9999999999999999988 8999999999999999999999999999652 24455666778 9999998884
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.2e-21 Score=136.77 Aligned_cols=93 Identities=44% Similarity=0.679 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHH
Q 042906 258 NGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAA 337 (415)
Q Consensus 258 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~ 337 (415)
+|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHH
Confidence 478999999999999999999999988 588999999999999999999999999999887 8889999999999999
Q ss_pred hcCChHHHHHHhhccCcC
Q 042906 338 MGLHSDVVFTLSRHKSVN 355 (415)
Q Consensus 338 ~~~~~~~~~~Ll~~~g~~ 355 (415)
..|+.+++++|+++ |++
T Consensus 77 ~~~~~~~~~~Ll~~-ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEA-GAY 93 (93)
T ss_dssp HTTCHHHHHHHHHT-TCC
T ss_pred HcCCHHHHHHHHHc-CCC
Confidence 99999999999976 764
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.87 E-value=4.4e-22 Score=145.18 Aligned_cols=109 Identities=32% Similarity=0.468 Sum_probs=100.7
Q ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906 254 KRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL 333 (415)
Q Consensus 254 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l 333 (415)
.+|..|.||||+|+..++.+++++|++++++ ++..|..|.||||+|+..++.+++++|++.|++ ++.+|..|+|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHH
Confidence 3678899999999999999999999999998 699999999999999999999999999999887 899999999999
Q ss_pred HHHHhcCChHHHHHHhhccCcCccccccccccchhH
Q 042906 334 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIAL 369 (415)
Q Consensus 334 ~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l 369 (415)
|+|+..++.+++++|+++ |++++.++..| .||-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~--~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAK-GADVNARSWGS--SHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTT-SSSHHHHSCCC--C---
T ss_pred HHHHHCCCHHHHHHHHHc-CCCCCcCCccc--cccc
Confidence 999999999999999986 99999999999 8874
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=6.9e-22 Score=172.55 Aligned_cols=128 Identities=17% Similarity=0.201 Sum_probs=118.9
Q ss_pred CCCCCCHHHHHHHc-CCHHHHHHHHHhCCCcccccc--CCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcH
Q 042906 256 DCNGETPLHLAAEN-GKLKVLKLLINKYPDAIEIRD--NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTP 332 (415)
Q Consensus 256 ~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~--~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~ 332 (415)
...+.|+||.|+.. ++.+++++|+++|++ ++..+ ..|.||||+|+..++.+++++|+++|++ ++.+|..|+||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---vn~~d~~G~Tp 271 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGP 271 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCCCH
Confidence 34566899999999 999999999999999 58888 8999999999999999999999999988 99999999999
Q ss_pred HHHHHhcCChHHHHHHhhccCcCccccccccccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 042906 333 LHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNIALEIAEITRADGKEIQKHLTLKALKTAYAK 397 (415)
Q Consensus 333 l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~~t~l~~a~~~~~~~~~~~~~~~~~~L~~~Ga~ 397 (415)
||+|+..|+.+++++|+++ |++++.+|.+| .||||+|+. .++.+++++|+..|+.
T Consensus 272 Lh~A~~~g~~~~v~~LL~~-Gad~~~~d~~G--~TpL~~A~~-------~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKR-GADLGARDSEG--RDPLTIAME-------TANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTS--CCHHHHHHH-------TTCHHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHC-cCCCCCcCCCC--CCHHHHHHH-------CCCHHHHHHHHHcCCC
Confidence 9999999999999999986 99999999999 999999999 5788999999999855
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=2.2e-20 Score=136.15 Aligned_cols=109 Identities=29% Similarity=0.442 Sum_probs=100.0
Q ss_pred ccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHH
Q 042906 220 RLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHV 299 (415)
Q Consensus 220 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 299 (415)
..|..|.||||+|+..++.+++++|++++.+++ ..+..|.||||+|+..++.+++++|++++++ ++.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 457789999999999999999999999999877 5789999999999999999999999999999 69999999999999
Q ss_pred HHhcCCHHHHHHHhhCCCcccccccCCCCCCcHH
Q 042906 300 AAKHGNWNIVSFILKSPEMENLINLVDRNGNTPL 333 (415)
Q Consensus 300 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l 333 (415)
|+..++.+++++|+++|++ ++.++..|.+|-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGAD---VNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSS---HHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCC---CCcCCccccccc
Confidence 9999999999999999988 899999999873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=2.8e-18 Score=123.46 Aligned_cols=90 Identities=21% Similarity=0.333 Sum_probs=72.2
Q ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHH
Q 042906 255 RDCNGETPLHLAAENGKLKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLH 334 (415)
Q Consensus 255 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~ 334 (415)
.+.+|.||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFD 95 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCcHHH
Confidence 566777888888888888888888888877 577888888888888888888888888888776 7788888888888
Q ss_pred HHHhcCChHHHHHH
Q 042906 335 LAAMGLHSDVVFTL 348 (415)
Q Consensus 335 ~A~~~~~~~~~~~L 348 (415)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 88888888888776
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=1.7e-18 Score=124.64 Aligned_cols=93 Identities=25% Similarity=0.238 Sum_probs=83.7
Q ss_pred cccccCCCCcHHHHHHhcCCHHHHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhccCcCcccccccccc
Q 042906 286 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARN 365 (415)
Q Consensus 286 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~g~~~~~~d~~g~~ 365 (415)
....+.+|.|+||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g-- 90 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFG-- 90 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTS--
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccccCC--
Confidence 355678899999999999999999999999887 899999999999999999999999999987 99999999999
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHHH
Q 042906 366 NIALEIAEITRADGKEIQKHLTLKAL 391 (415)
Q Consensus 366 ~t~l~~a~~~~~~~~~~~~~~~~~~L 391 (415)
+||||+|+. .++.+++++|
T Consensus 91 ~tpl~~A~~-------~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISID-------NGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHH-------HTCHHHHHHH
T ss_pred CcHHHHHHH-------cCCHHHHHHh
Confidence 999999999 5778888887
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=84.08 E-value=7.6 Score=33.30 Aligned_cols=126 Identities=10% Similarity=0.057 Sum_probs=64.4
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhcc-ccccCCCcchhh
Q 042906 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVP-AVNQAGPLPVLE 112 (415)
Q Consensus 34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~ 112 (415)
|.-.|......++.+-.+.+++.- ......-..|..|+..+.-....++.+....+++.-. .+.
T Consensus 37 gsR~lQ~~l~~~~~~~~~~i~~ei------~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~--------- 101 (351)
T 3gvo_A 37 GSRFIQQKLERATPAERQIVFNEI------LQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVL--------- 101 (351)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH------GGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHH---------
T ss_pred chHHHHHHHhhCCHHHHHHHHHHH------HHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHH---------
Confidence 333444444455544444444431 1122334577788888887888887776666665321 111
Q ss_pred hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCCC-C-CcccccccCCcHHHHHHHcCChhHHHHHh
Q 042906 113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKDS-V-PSSYINKAYQTPLSIAIDARLNDSACFII 176 (415)
Q Consensus 113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~-~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll 176 (415)
--..+.+|...+..+......+-...+++.-. . .....+..|...+..+......+....++
T Consensus 102 --~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~ 165 (351)
T 3gvo_A 102 --PLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFII 165 (351)
T ss_dssp --HHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHH
T ss_pred --HHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHH
Confidence 11356777777777777766655454543211 1 11123445555555555544444444444
No 116
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=80.19 E-value=0.84 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=13.7
Q ss_pred ChHHHHHHHcCChhHHHHHHh
Q 042906 2 DQELLEVLRNGDENKIKQLAL 22 (415)
Q Consensus 2 ~~~L~~A~~~g~~~~v~~ll~ 22 (415)
+.+++.|+..||.+.++.|-.
T Consensus 14 EQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHH
Confidence 456667777777777766543
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=77.93 E-value=16 Score=31.48 Aligned_cols=161 Identities=8% Similarity=0.019 Sum_probs=77.1
Q ss_pred CCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHHHhCcHHHHHHHHhhcc-ccccCCCcchhh
Q 042906 34 GNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAARIGNRAIVSEIVKYVP-AVNQAGPLPVLE 112 (415)
Q Consensus 34 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~ 112 (415)
|.-.+..+...++.+-.+.+++.- .....--..|.+|+..+......+..+....+++.-. .+.
T Consensus 42 gsR~lQ~~l~~~~~~~~~~I~~el------~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~--------- 106 (369)
T 3k49_A 42 GSRFIQRELATSPASEKEVIFNEI------RDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMK--------- 106 (369)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH------GGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHH---------
T ss_pred chHHHHHHhccCCHHHHHHHHHHH------HHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHH---------
Confidence 444444455555554444444431 1223334567788888888888887776666665321 110
Q ss_pred hhhhcccCCCChHHHHHHHcCCHHHHHHHHhCC-CC-CcccccccCCcHHHHHHHcCChhHHHHHhhhCCCC-ccCCCCC
Q 042906 113 SLFRMRDIEGNTPLHNAVTNQHKRVIRILVEKD-SV-PSSYINKAYQTPLSIAIDARLNDSACFIIDKSPES-LNTTRLP 189 (415)
Q Consensus 113 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~ 189 (415)
--..+.+|...+..+......+-...+++.- +. .....+..|...+..++..+..+....+++.-... .......
T Consensus 107 --~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~ 184 (369)
T 3k49_A 107 --QLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHS 184 (369)
T ss_dssp --HHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTST
T ss_pred --HHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 0124566777777776666555444444321 11 11123555555555555554443333333221111 1112224
Q ss_pred cchhHHHHHHHcCCHHHHHHHH
Q 042906 190 DELTLLHFVVMRQNYDIMVKIL 211 (415)
Q Consensus 190 ~~~~~l~~a~~~~~~~~~~~ll 211 (415)
.|...+..+...+..+.-..++
T Consensus 185 ~Gs~Vvq~~l~~~~~~~~~~i~ 206 (369)
T 3k49_A 185 YGCRVIQRLLEFGSSEDQESIL 206 (369)
T ss_dssp THHHHHHHHHHHSCHHHHHHHH
T ss_pred ccCcHHHHHHHhCCHHHHHHHH
Confidence 5555555555555544444444
No 118
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=75.24 E-value=24 Score=26.59 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=75.0
Q ss_pred hHHHHHHHcCChhHHHHHHhhccccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906 3 QELLEVLRNGDENKIKQLALRQNIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI 82 (415)
Q Consensus 3 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 82 (415)
..+-.|+..|+++....+.+...+.... ...=..|...|++++++....+-.+. . ..+.+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~~~~W----k~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~--~L~~L 69 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLNDSITW----ERLIQEALAQGNASLAEMIYQTQHSF--------------D--KLSFL 69 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCCHHHH----HHHHHHHHHTTCHHHHHHHHHHTTCH--------------H--HHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCCHHHH----HHHHHHHHHcCChHHHHHHHHHhCCH--------------H--HHHHH
Confidence 3566788888888887776654211110 12334566778888888777762221 1 22344
Q ss_pred HHHhCcHHHHHHHHhhccccccCCCcchhhhhhhcccCCCChHHHHHHHcCCH-HHHHHHHhCCCCCcccccccCCcHHH
Q 042906 83 AARIGNRAIVSEIVKYVPAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHK-RVIRILVEKDSVPSSYINKAYQTPLS 161 (415)
Q Consensus 83 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~~l~ 161 (415)
....|+.+-++.+.+.. ....+...+++.+...|+. +++++|.+.|.-+ -+..
T Consensus 70 y~~tg~~e~L~kla~iA-----------------~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~---------eA~~ 123 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIA-----------------QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP---------LAYA 123 (177)
T ss_dssp HHHHTCHHHHHHHHHHH-----------------HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH---------HHHH
T ss_pred HHHhCCHHHHHHHHHHH-----------------HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH---------HHHH
Confidence 44456666655554421 1233445667777777775 4666666655422 2455
Q ss_pred HHHHcCChhHHHHHhhhC
Q 042906 162 IAIDARLNDSACFIIDKS 179 (415)
Q Consensus 162 ~a~~~~~~~~~~~ll~~~ 179 (415)
.|-.++..+....+++.-
T Consensus 124 ~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 124 VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHTTCHHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHHh
Confidence 566677777777766543
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=73.00 E-value=20 Score=30.69 Aligned_cols=118 Identities=13% Similarity=0.069 Sum_probs=60.9
Q ss_pred HHHcCChhHHHHHHhhc---cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHHHH
Q 042906 8 VLRNGDENKIKQLALRQ---NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHIAA 84 (415)
Q Consensus 8 A~~~g~~~~v~~ll~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 84 (415)
.+..++.+..+.+++.- ..--..|..|+..+......++.+....+++.-. ....--..+..|...+..+.
T Consensus 44 ~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~------g~~~~l~~~~~G~rvvQk~l 117 (351)
T 3gvo_A 44 KLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR------GHVLPLALQMYGCRVIQKAL 117 (351)
T ss_dssp HHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHT------TCHHHHHTSTTHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHH------hhHHHHhhCHHhHHHHHHHH
Confidence 34445555444444332 1112356778888888888888877777776521 11222245666666666666
Q ss_pred HhCcHHHHHHHHhhc-cccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHH
Q 042906 85 RIGNRAIVSEIVKYV-PAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILV 142 (415)
Q Consensus 85 ~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 142 (415)
.....+-...+++.- ..+ . --..|.+|+..+..+...+..+....++
T Consensus 118 e~~~~~~~~~i~~el~~~~---------~--~L~~d~~Gn~ViQk~l~~~~~~~~~~i~ 165 (351)
T 3gvo_A 118 ESISSDQQSEMVKELDGHV---------L--KCVKDQNGNHVVQKCIECVQPQSLQFII 165 (351)
T ss_dssp HHSCHHHHHHHHGGGTTCH---------H--HHHHSTTHHHHHHHHHHHSCGGGTHHHH
T ss_pred HhCCHHHHHHHHHHhhhhH---------H--HHHHhhhhhHHHHHHHHhCCHHHHHHHH
Confidence 666555444444321 000 0 1124566666666555554444333333
No 120
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=57.43 E-value=28 Score=30.06 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=40.5
Q ss_pred HHHHcCChhHHHHHHhhccccc------------cCC--CCCCCHHHHHHHhCCHHHHHHHHhc
Q 042906 7 EVLRNGDENKIKQLALRQNIFS------------TSS--PGGNTVLHMAVRFRNQQVIREILRQ 56 (415)
Q Consensus 7 ~A~~~g~~~~v~~ll~~~~~~~------------~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~ 56 (415)
..+..||...|+..+..|.+.+ ..+ .-|.|.+|+|+++.+-+++..|+..
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 4567899999999999883332 222 3599999999999999999999985
No 121
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=55.74 E-value=56 Score=28.06 Aligned_cols=154 Identities=11% Similarity=0.039 Sum_probs=70.1
Q ss_pred HHHHHcCChhHHHHHHhhc---cccccCCCCCCCHHHHHHHhCCHHHHHHHHhccchHHHHHHhHhhhcCCCCCCChHHH
Q 042906 6 LEVLRNGDENKIKQLALRQ---NIFSTSSPGGNTVLHMAVRFRNQQVIREILRQQNFIALRLHYSLLRQKNLMDETPLHI 82 (415)
Q Consensus 6 ~~A~~~g~~~~v~~ll~~~---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~g~t~L~~ 82 (415)
-.++..++.+..+.+++.- ..--..|..|+..+......++.+..+.+++.... ...--..+..|...+..
T Consensus 47 Q~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g------~~~~L~~~~~G~rVlQk 120 (369)
T 3k49_A 47 QRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKG------NMKQLSLQMYACRVIQK 120 (369)
T ss_dssp HHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTT------CHHHHHHSTTHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhh------hHHHHhcChhhHHHHHH
Confidence 3444555555444444432 11123566788888888888877776666665211 11111234445555555
Q ss_pred HHHhCcHHHHHHHHhhc-cccccCCCcchhhhhhhcccCCCChHHHHHHHcCCHHHHHHHHhC--CCCCcccccccCCcH
Q 042906 83 AARIGNRAIVSEIVKYV-PAVNQAGPLPVLESLFRMRDIEGNTPLHNAVTNQHKRVIRILVEK--DSVPSSYINKAYQTP 159 (415)
Q Consensus 83 A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~ 159 (415)
+......+-...+++.- ..+ .--..|.+|+..+......+..+..+.+++. +.-.....+..|...
T Consensus 121 ~le~~~~~q~~~ii~el~~~~-----------~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~V 189 (369)
T 3k49_A 121 ALEYIDSNQRIELVLELSDSV-----------LQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRV 189 (369)
T ss_dssp HHHHSCHHHHHHHHGGGTTCH-----------HHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHH-----------HHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcH
Confidence 55544444333333211 000 0112466666666666655543322222221 110111234445455
Q ss_pred HHHHHHcCChhHHHHHh
Q 042906 160 LSIAIDARLNDSACFII 176 (415)
Q Consensus 160 l~~a~~~~~~~~~~~ll 176 (415)
+..+...+..+..+.++
T Consensus 190 vq~~l~~~~~~~~~~i~ 206 (369)
T 3k49_A 190 IQRLLEFGSSEDQESIL 206 (369)
T ss_dssp HHHHHHHSCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 55555555544444444
No 122
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=46.95 E-value=90 Score=23.48 Aligned_cols=134 Identities=12% Similarity=0.075 Sum_probs=61.3
Q ss_pred hHHHHHHHcCCHHHHHHHHhcChhhhcccccCCCCHHHHHHhcCCHHHHHHHHHhchhhhhccCCCCCCHHHHHHHcCCH
Q 042906 193 TLLHFVVMRQNYDIMVKILGTNKELIDRLDWHQRNPLHYAAASGNVKMAQRLLEESKQLAYKRDCNGETPLHLAAENGKL 272 (415)
Q Consensus 193 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~ 272 (415)
+-+..|...|+++....+...... .......-..|...|+.++++.-.++..+... .+.+....|+.
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~--------L~~Ly~~tg~~ 76 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLND-----SITWERLIQEALAQGNASLAEMIYQTQHSFDK--------LSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH--------HHHHHHHHTCH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH--------HHHHHHHhCCH
Confidence 445555555555555444332110 00011233455555666666665555433331 23333344555
Q ss_pred HHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHH-HHHHHhhCCCcccccccCCCCCCcHHHHHHhcCChHHHHHHhhc
Q 042906 273 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWN-IVSFILKSPEMENLINLVDRNGNTPLHLAAMGLHSDVVFTLSRH 351 (415)
Q Consensus 273 ~~v~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~-~~~~Ll~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 351 (415)
+-++.+.+. -....+-..+++.+...|+++ ++++|.+.|.. .-+..+|.-+|..++.+-+++.
T Consensus 77 e~L~kla~i-----A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~-----------~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNI-----AQTREDFGSMLLNTFYNNSTKERSSIFAEGGSL-----------PLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHH-----HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH-----------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh-----------HHHHHHHHHcCcHHHHHHHHHH
Confidence 555444331 111222234555555555553 44555544322 1244555566666666666655
Q ss_pred cCcC
Q 042906 352 KSVN 355 (415)
Q Consensus 352 ~g~~ 355 (415)
.|.+
T Consensus 141 ~~~~ 144 (177)
T 3mkq_B 141 AEVD 144 (177)
T ss_dssp TTCC
T ss_pred hCCc
Confidence 4443
No 123
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.97 E-value=69 Score=27.75 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHhCCHHHHHHHHhccchHHHHHH---hHhhhcCC--CCCCChHHHHHHhCcHHHHHHHHhhc
Q 042906 40 MAVRFRNQQVIREILRQQNFIALRLH---YSLLRQKN--LMDETPLHIAARIGNRAIVSEIVKYV 99 (415)
Q Consensus 40 ~A~~~g~~~~v~~Ll~~~~~~~~~~~---~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~ 99 (415)
..+..|+...|+..+..|++++-... ...+|..+ ..|.|.+|.|++..+.+++..|+..+
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTEV 92 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhcc
Confidence 34567999999999999877532211 22333333 34899999999999999999999733
No 124
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=27.77 E-value=74 Score=28.75 Aligned_cols=89 Identities=19% Similarity=0.084 Sum_probs=46.1
Q ss_pred hHHHHHHHcCCHHHHHHHH----hCCCCCcccccccCCcHHHHHHHcCChhHHHHHhhhCCCCccCCCCCcchhHHHHHH
Q 042906 124 TPLHNAVTNQHKRVIRILV----EKDSVPSSYINKAYQTPLSIAIDARLNDSACFIIDKSPESLNTTRLPDELTLLHFVV 199 (415)
Q Consensus 124 t~l~~A~~~~~~~~v~~Ll----~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~l~~a~ 199 (415)
+.+...++.|+.+-+..++ +.|..++ .....+.+...+..|..+-+..+++.-.............+.+...+
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 3455666778766554444 4454332 11223455566677776655555443211111111123334556667
Q ss_pred HcCCHHHHHHHHhcCh
Q 042906 200 MRQNYDIMVKILGTNK 215 (415)
Q Consensus 200 ~~~~~~~~~~ll~~~~ 215 (415)
..|..+.+..+++...
T Consensus 187 ~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR 202 (501)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHH
Confidence 7788887777776543
Done!