Your job contains 1 sequence.
>042908
MALENRNTSDDQPAGVMGFFSNGSFFDHHQQPQLCMSFADNNIQSEALVVPSIGLIADFS
HDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPK
EVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRS
LQNQIEFLSMKLSAASMYYDFNSELDTTETMPGTNECDAQDMERMVREGYGGPSYFHSAW
SL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 042908
(242 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2027809 - symbol:BEE3 "AT1G73830" species:3702... 470 1.2e-44 1
TAIR|locus:2014144 - symbol:BEE1 "BR enhanced expression ... 468 1.9e-44 1
TAIR|locus:2032990 - symbol:CES "AT1G25330" species:3702 ... 459 1.7e-43 1
TAIR|locus:505006688 - symbol:AT5G50915 "AT5G50915" speci... 352 3.7e-32 1
UNIPROTKB|Q5N802 - symbol:P0004D12.24 "BHLH transcription... 345 2.0e-31 1
TAIR|locus:2205420 - symbol:AT1G68920 species:3702 "Arabi... 311 4.1e-31 2
TAIR|locus:2028804 - symbol:CIB5 "AT1G26260" species:3702... 304 3.3e-30 2
UNIPROTKB|Q84QW1 - symbol:OJ1191_A10.109 "BHLH transcript... 331 6.2e-30 1
TAIR|locus:2152551 - symbol:AT5G48560 "AT5G48560" species... 332 6.8e-30 1
TAIR|locus:2095198 - symbol:AT3G23690 "AT3G23690" species... 326 2.1e-29 1
TAIR|locus:2079676 - symbol:AT3G07340 "AT3G07340" species... 325 2.7e-29 1
UNIPROTKB|Q5VR96 - symbol:P0038C05.31-1 "Os06g0275600 pro... 310 1.0e-27 1
UNIPROTKB|Q69JJ6 - symbol:OSJNBa0026C08.22 "TA1 protein-l... 309 1.3e-27 1
UNIPROTKB|Q75M33 - symbol:P0668H12.5 "BHLH transcription ... 305 3.5e-27 1
UNIPROTKB|Q8GZV6 - symbol:OJ1017C11.10 "Putative uncharac... 308 1.8e-26 1
TAIR|locus:2172209 - symbol:AT5G62610 "AT5G62610" species... 297 2.5e-26 1
TAIR|locus:2201906 - symbol:AT1G10120 "AT1G10120" species... 294 5.2e-26 1
TAIR|locus:2202867 - symbol:BPEp "AT1G59640" species:3702... 293 6.6e-26 1
TAIR|locus:2139484 - symbol:CIB1 "AT4G34530" species:3702... 292 8.4e-26 1
UNIPROTKB|Q6Z2G7 - symbol:P0680A05.9 "Putative bHLH trans... 290 1.4e-25 1
UNIPROTKB|Q69WS3 - symbol:OJ1118_E12.15 "Putative bHLH pr... 265 2.1e-25 2
TAIR|locus:2115200 - symbol:BEE2 "AT4G36540" species:3702... 287 2.9e-25 1
UNIPROTKB|Q6ZCV8 - symbol:P0028A08.20 "Os08g0487700 prote... 285 4.6e-25 1
UNIPROTKB|Q84LH4 - symbol:OSJNBb0011H13.2 "Putative Helix... 285 4.6e-25 1
UNIPROTKB|Q84T08 - symbol:OSJNBa0087C10.10 "BHLH transcri... 285 4.6e-25 1
TAIR|locus:2053766 - symbol:AT2G42300 "AT2G42300" species... 284 5.9e-25 1
TAIR|locus:2076581 - symbol:AT3G57800 "AT3G57800" species... 186 2.3e-23 2
UNIPROTKB|Q7Y1H4 - symbol:OSJNBa0094F01.11 "Putative unch... 208 6.7e-17 1
TAIR|locus:2047555 - symbol:LRL1 "AT2G24260" species:3702... 202 6.6e-16 1
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 181 1.2e-15 2
TAIR|locus:2147760 - symbol:LRL3 "AT5G58010" species:3702... 195 1.6e-15 1
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 201 2.8e-15 1
TAIR|locus:2132303 - symbol:UNE12 "AT4G02590" species:370... 193 3.8e-15 1
TAIR|locus:2126624 - symbol:LRL2 "AT4G30980" species:3702... 192 4.9e-15 1
TAIR|locus:2007534 - symbol:AT1G03040 "AT1G03040" species... 188 1.2e-14 1
TAIR|locus:2141573 - symbol:FBH2 "AT4G09180" species:3702... 182 3.8e-14 1
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 181 2.5e-13 1
UNIPROTKB|Q6EPZ6 - symbol:P0014G10.34 "BHLH transcription... 177 2.0e-12 1
UNIPROTKB|Q8S490 - symbol:rau1 "Transcription factor RAU1... 162 5.0e-12 1
UNIPROTKB|Q6Z1F9 - symbol:OSJNBa0033D24.39 "BHLH transcri... 157 1.7e-11 1
TAIR|locus:2117773 - symbol:AT4G28790 species:3702 "Arabi... 168 2.2e-11 2
TAIR|locus:4010713915 - symbol:AT4G28811 species:3702 "Ar... 172 3.3e-11 1
UNIPROTKB|Q69WX7 - symbol:P0417G12.19 "Basic helix-loop-h... 154 3.5e-11 1
TAIR|locus:2008693 - symbol:FBH1 "AT1G35460" species:3702... 163 9.4e-11 1
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 167 1.7e-10 1
TAIR|locus:2026037 - symbol:FBH3 "AT1G51140" species:3702... 162 5.3e-10 1
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 144 5.6e-10 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 158 9.9e-10 1
TAIR|locus:2117788 - symbol:AT4G28800 species:3702 "Arabi... 161 1.0e-09 1
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 162 1.0e-09 1
UNIPROTKB|Q2QMV9 - symbol:LOC_Os12g39850 "Helix-loop-heli... 151 1.2e-09 2
UNIPROTKB|Q6K8Y4 - symbol:OJ1695_H09.18 "Basic helix-loop... 124 1.4e-09 2
TAIR|locus:2059979 - symbol:FBH4 "AT2G42280" species:3702... 158 1.6e-09 1
TAIR|locus:2041369 - symbol:PIL1 "phytochrome interacting... 158 2.2e-09 1
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 155 2.2e-09 1
UNIPROTKB|Q7XT55 - symbol:OSJNBa0084K20.3 "OSJNBa0076N16.... 145 9.0e-09 1
TAIR|locus:2118934 - symbol:RSL2 "AT4G33880" species:3702... 151 1.2e-08 1
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 147 1.4e-08 1
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 153 1.6e-08 1
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 148 2.1e-08 1
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 148 4.3e-08 1
UNIPROTKB|Q2QMM0 - symbol:LOC_Os12g40710 "Helix-loop-heli... 143 5.4e-08 1
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 145 1.1e-07 1
TAIR|locus:505006103 - symbol:AT1G05805 "AT1G05805" speci... 141 1.4e-07 2
TAIR|locus:2199307 - symbol:AT1G68240 species:3702 "Arabi... 130 1.9e-07 1
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 142 2.0e-07 1
UNIPROTKB|Q6Z9R3 - symbol:P0461F06.33 "BHLH protein famil... 136 3.0e-07 1
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 134 3.4e-07 1
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 139 4.0e-07 1
UNIPROTKB|Q67TR8 - symbol:B1342C04.6 "Basic helix-loop-he... 134 4.5e-07 1
TAIR|locus:2156015 - symbol:RSL1 "AT5G37800" species:3702... 132 1.8e-06 1
UNIPROTKB|Q6AV35 - symbol:OSJNBa0063J18.7 "Putative trans... 131 2.5e-06 1
TAIR|locus:2144791 - symbol:HEC3 "AT5G09750" species:3702... 127 2.7e-06 1
TAIR|locus:2033015 - symbol:MEE8 "AT1G25310" species:3702... 111 3.5e-06 1
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 125 3.6e-06 1
TAIR|locus:2155543 - symbol:HEC1 "HECATE 1" species:3702 ... 127 3.6e-06 1
UNIPROTKB|Q2QMN2 - symbol:LOC_Os12g40590 "Helix-loop-heli... 128 3.7e-06 1
UNIPROTKB|Q651K2 - symbol:B1089G05.30 "BHLH protein-like"... 128 4.9e-06 1
TAIR|locus:2163163 - symbol:PIF7 "AT5G61270" species:3702... 129 6.1e-06 1
TAIR|locus:2074865 - symbol:HEC2 "AT3G50330" species:3702... 124 7.3e-06 1
TAIR|locus:2089418 - symbol:AT3G21330 "AT3G21330" species... 127 1.1e-05 1
UNIPROTKB|Q2R0R9 - symbol:LOC_Os11g41640 "Helix-loop-heli... 123 1.2e-05 1
UNIPROTKB|Q2QML8 - symbol:LOC_Os12g40730 "Helix-loop-heli... 126 1.5e-05 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 128 2.2e-05 1
UNIPROTKB|Q657D1 - symbol:P0697C12.40 "BHLH transcription... 124 3.7e-05 1
UNIPROTKB|Q2QQ32 - symbol:LOC_Os12g32400 "Helix-loop-heli... 116 3.8e-05 1
UNIPROTKB|Q69TX2 - symbol:P0021C04.13 "BHLH protein-like"... 117 3.8e-05 1
UNIPROTKB|Q5TKP7 - symbol:OJ1362_G11.11 "Putative unchara... 123 3.8e-05 1
UNIPROTKB|Q9ASJ3 - symbol:P0439B06.24 "Putative uncharact... 120 4.4e-05 1
TAIR|locus:2028957 - symbol:RHD6 "AT1G66470" species:3702... 120 4.5e-05 1
TAIR|locus:2134583 - symbol:AT4G00870 "AT4G00870" species... 121 6.6e-05 1
UNIPROTKB|Q6ZFY4 - symbol:OJ1311_H06.19 "BHLH protein-lik... 118 7.8e-05 1
UNIPROTKB|Q8W5G3 - symbol:OSJNBa0002J24.23 "Helix-loop-he... 118 8.5e-05 1
UNIPROTKB|Q8S0N2 - symbol:P0692C11.41-1 "BHLH transcripti... 119 0.00010 1
TAIR|locus:504954829 - symbol:GL3 "AT5G41315" species:370... 118 0.00027 1
TAIR|locus:2062235 - symbol:NAI1 "AT2G22770" species:3702... 112 0.00045 1
TAIR|locus:2093746 - symbol:FMA "AT3G24140" species:3702 ... 113 0.00054 2
TAIR|locus:2090679 - symbol:AT3G19500 species:3702 "Arabi... 93 0.00057 2
TAIR|locus:2098008 - symbol:PIL2 "phytochrome interacting... 111 0.00074 1
UNIPROTKB|Q94LR3 - symbol:OSJNBa0010C11.7 "Helix-loop-hel... 105 0.00079 1
WARNING: Descriptions of 1 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2027809 [details] [associations]
symbol:BEE3 "AT1G73830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000090950 ProtClustDB:CLSN2680013 EMBL:AF488585
EMBL:AC012679 EMBL:AK118781 EMBL:BT006055 IPI:IPI00541876
RefSeq:NP_177524.2 UniGene:At.34949 ProteinModelPortal:Q8GWK7
SMR:Q8GWK7 EnsemblPlants:AT1G73830.1 GeneID:843719
KEGG:ath:AT1G73830 TAIR:At1g73830 eggNOG:NOG264296
InParanoid:Q8GWK7 OMA:LENNFHQ PhylomeDB:Q8GWK7
Genevestigator:Q8GWK7 Uniprot:Q8GWK7
Length = 261
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 113/226 (50%), Positives = 144/226 (63%)
Query: 24 SFFDHHQQPQLCMSFA-DNNIQSEALVVPS-IGLIADFSH--DTSNGKKA--AAHTVESF 77
S F H+Q P + +NN + + PS I + S DT K A T E+
Sbjct: 43 SLFFHNQFPDHFPGKSLENNFH-QGIFFPSNIQNNEESSSQFDTKKRKSLMEAVSTSENS 101
Query: 78 MNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHS 137
++ T ++ S +S+N + S R+ KR+ R EK +EV+HVRA+RGQATDSHS
Sbjct: 102 VS-DQTLSTSSAQVSINGN-ISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHS 159
Query: 138 LAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASM 197
+AERVRR KINERL+CLQD+VPGCYKTMGMA MLD IINYV+SLQNQ+EFLSMKL+AAS
Sbjct: 160 IAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASS 219
Query: 198 YYDFNSELDTTETMPGTNECDAQDMERMVREGYGGPSYFHSA-WSL 242
YYDFNSE D E+M +A +M +G G S FHS+ W+L
Sbjct: 220 YYDFNSETDAVESMQKAKAREAVEMG----QGRDGSSVFHSSSWTL 261
>TAIR|locus:2014144 [details] [associations]
symbol:BEE1 "BR enhanced expression 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC013354
EMBL:AY138253 EMBL:AF488579 EMBL:AK117269 EMBL:BT005268
IPI:IPI00539846 RefSeq:NP_173276.2 UniGene:At.46141
ProteinModelPortal:Q8GZ13 SMR:Q8GZ13 IntAct:Q8GZ13
EnsemblPlants:AT1G18400.1 GeneID:838421 KEGG:ath:AT1G18400
TAIR:At1g18400 eggNOG:euNOG17991 HOGENOM:HOG000090950
InParanoid:Q8GZ13 PhylomeDB:Q8GZ13 ProtClustDB:CLSN2680013
Genevestigator:Q8GZ13 Uniprot:Q8GZ13
Length = 260
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 109/220 (49%), Positives = 132/220 (60%)
Query: 24 SFFDHHQQPQLCMSFADNNIQSEALVVPSIGLIADFSHDTSNGKKAAAHTVESFMNLSPT 83
S F HH Q QL + F N+ S + + F H N LS +
Sbjct: 49 SLFLHHHQQQL-LHFPGNSPDSSN----NFSSTSSFLHSDHNIVDETKKRKALLPTLSSS 103
Query: 84 PASG-SGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERV 142
SG S +V TG G++ K+ E EK +EV+HVRA+RGQATDSHSLAERV
Sbjct: 104 ETSGVSDNTNVIATETGSLR-RGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERV 162
Query: 143 RREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFN 202
RR KINERLRCLQD+VPGCYK MGMA MLD IINYV+SLQNQ+EFLSMKL+AAS +YDFN
Sbjct: 163 RRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFN 222
Query: 203 SELDTTETMPGTNECDAQDMERMVREGYGGPSYFHSAWSL 242
SE D ++M + +M R R+G P + S WSL
Sbjct: 223 SETDAVDSMQRAKARETVEMGRQTRDG--SPVFHLSTWSL 260
>TAIR|locus:2032990 [details] [associations]
symbol:CES "AT1G25330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:2000488 "positive regulation of brassinosteroid biosynthetic
process" evidence=IMP] [GO:0048441 "petal development"
evidence=RCA] [GO:0048443 "stamen development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG264296 EMBL:AC079374 EMBL:DQ446289 EMBL:DQ652859
EMBL:AK175757 EMBL:AY088885 EMBL:AF488607 IPI:IPI00519962
PIR:B86383 PIR:D86381 RefSeq:NP_564229.1 UniGene:At.48236
UniGene:At.63980 ProteinModelPortal:A4D998 SMR:A4D998
EnsemblPlants:AT1G25330.1 GeneID:839117 KEGG:ath:AT1G25330
GeneFarm:2907 TAIR:At1g25330 InParanoid:A4D998 PhylomeDB:A4D998
Genevestigator:A4D998 GO:GO:2000488 Uniprot:A4D998
Length = 223
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 99/155 (63%), Positives = 115/155 (74%)
Query: 92 SVNNKGTGMQGLSGRKRKRNNERVV------EKPKEVIHVRAKRGQATDSHSLAERVRRE 145
+ KG + S R+RKR+ E +KPK+V+HVRAKRGQATDSHSLAERVRRE
Sbjct: 65 NTRRKGNKEESGSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHSLAERVRRE 124
Query: 146 KINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNS-E 204
KINERL+CLQDLVPGCYK MGMAVMLDVII+YVRSLQNQIEFLSMKLSAAS YD NS +
Sbjct: 125 KINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLNSLD 184
Query: 205 LDTTETMPGTNECDAQDMERMVREGYGG-PSYFHS 238
++ T+ G N A +MER++RE G P F S
Sbjct: 185 IEPTDIFQGGNIHSAAEMERILRESVGTQPPNFSS 219
>TAIR|locus:505006688 [details] [associations]
symbol:AT5G50915 "AT5G50915" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB017063 EMBL:AF428350 EMBL:AY057549 EMBL:AY113059
EMBL:AY087602 IPI:IPI00536793 RefSeq:NP_568745.1 RefSeq:NP_851163.1
UniGene:At.23601 ProteinModelPortal:Q93W88 SMR:Q93W88
EnsemblPlants:AT5G50915.1 EnsemblPlants:AT5G50915.2 GeneID:835164
KEGG:ath:AT5G50915 TAIR:At5g50915 eggNOG:NOG262059
HOGENOM:HOG000242938 InParanoid:Q93W88 OMA:ISERMRT PhylomeDB:Q93W88
ProtClustDB:CLSN2689980 Genevestigator:Q93W88 Uniprot:Q93W88
Length = 286
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 75/137 (54%), Positives = 97/137 (70%)
Query: 71 AHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRG 130
+H + N T G + NN G++G +K+KR ++ E P + IHVRA+RG
Sbjct: 86 SHGPSAITNTGKT--RGRKARNSNNSKEGVEGRKSKKQKRGSKE--EPPTDYIHVRARRG 141
Query: 131 QATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSM 190
QATDSHSLAERVRREKI+ER+R LQ+LVPGC K G A+MLD IINYV++LQ Q+EFLSM
Sbjct: 142 QATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSM 201
Query: 191 KLSAAS-MYYDFNSELD 206
KL++ S + YDF S+LD
Sbjct: 202 KLTSISPVVYDFGSDLD 218
>UNIPROTKB|Q5N802 [details] [associations]
symbol:P0004D12.24 "BHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008207 eggNOG:NOG283912 EMBL:AP003433 EMBL:HQ858864
EMBL:AK101063 RefSeq:NP_001045188.1 UniGene:Os.5763
EnsemblPlants:LOC_Os01g68700.2 GeneID:4324327 KEGG:osa:4324327
ProtClustDB:CLSN2692207 Uniprot:Q5N802
Length = 481
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 76/143 (53%), Positives = 101/143 (70%)
Query: 62 DTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKR-KRNNERVVEKPK 120
+ S+GK+ + T ES N + SG G + +N G G+K+ K ++ + E PK
Sbjct: 220 EDSSGKRCKS-TEES--NAAAEENSGKGKAAQSNSENG----GGKKQGKDSSSKPPEPPK 272
Query: 121 EVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRS 180
+ IHVRA+RG+ATDSHSLAERVRREKI++R++ LQDLVPGC K +G AVMLD IINYV+S
Sbjct: 273 DYIHVRARRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINYVQS 332
Query: 181 LQNQIEFLSMKLSAASMYYDFNS 203
LQ Q+EFLSMKL+ + DFN+
Sbjct: 333 LQRQVEFLSMKLATVNPQLDFNN 355
>TAIR|locus:2205420 [details] [associations]
symbol:AT1G68920 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AF488584 EMBL:AY128299
EMBL:BT002259 IPI:IPI00536565 IPI:IPI00545990 PIR:G96713
RefSeq:NP_001031255.1 RefSeq:NP_177058.1 RefSeq:NP_849863.2
UniGene:At.28096 ProteinModelPortal:Q9CAA9 SMR:Q9CAA9 STRING:Q9CAA9
EnsemblPlants:AT1G68920.1 EnsemblPlants:AT1G68920.2 GeneID:843225
KEGG:ath:AT1G68920 TAIR:At1g68920 eggNOG:NOG301979
HOGENOM:HOG000238007 InParanoid:Q3E6P7 OMA:MLKGGIF PhylomeDB:Q9CAA9
ProtClustDB:CLSN2682343 Genevestigator:Q9CAA9 Uniprot:Q9CAA9
Length = 486
Score = 311 (114.5 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 64/104 (61%), Positives = 78/104 (75%)
Query: 102 GLSGRKRKRNNERVVEKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPG 160
G K+ ++ + PK+ IHVRA+RGQAT+SHSLAERVRREKI+ER++ LQDLVPG
Sbjct: 279 GKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPG 338
Query: 161 CYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSE 204
C K G AVMLD IINYV+SLQ Q+EFLSMKL+ + DFN E
Sbjct: 339 CNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLE 382
Score = 52 (23.4 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 29/112 (25%), Positives = 43/112 (38%)
Query: 14 AGVMGFFSNGSFFDHHQQP----QLCMSFADNNIQSEALVVPSIGLIADFSHDTSNGKKA 69
A FS G+F D QP + F + + + + +D S K
Sbjct: 136 AARFSLFSGGNFSDMVNQPLGNSEAIGLFLQGGGTMQGQCQSNELNVGEPHNDVSVAVKE 195
Query: 70 AAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGR-------KRKRNNER 114
+ TV S P GSG +S + + +G G GR KRKRN ++
Sbjct: 196 S--TVRSSEQAKPN-VPGSGNVSEDTQSSGGNGQKGRETSSNTKKRKRNGQK 244
>TAIR|locus:2028804 [details] [associations]
symbol:CIB5 "AT1G26260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009911 "positive regulation of flower development"
evidence=IGI] [GO:0048513 "organ development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC079829 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238007
EMBL:AK117355 EMBL:BT005334 EMBL:AJ630483 EMBL:AY568655
EMBL:AF488608 IPI:IPI00529982 IPI:IPI00547855 PIR:H86388
RefSeq:NP_001031093.1 RefSeq:NP_173950.1 RefSeq:NP_973913.1
UniGene:At.41276 ProteinModelPortal:Q9C670 SMR:Q9C670 IntAct:Q9C670
STRING:Q9C670 EnsemblPlants:AT1G26260.1 EnsemblPlants:AT1G26260.2
GeneID:839167 KEGG:ath:AT1G26260 TAIR:At1g26260 eggNOG:NOG284637
InParanoid:Q9C670 OMA:ETHGYES PhylomeDB:Q9C670
ProtClustDB:CLSN2682645 Genevestigator:Q9C670 Uniprot:Q9C670
Length = 390
Score = 304 (112.1 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 67/106 (63%), Positives = 80/106 (75%)
Query: 101 QGLSGRKRKRNNERVV-EKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLV 158
Q + K N+E+ + K+ IH+RA+RGQAT+SHSLAERVRREKI+ER++ LQDLV
Sbjct: 197 QSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLV 256
Query: 159 PGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSE 204
PGC K G AVMLD IINYV+SLQ QIEFLSMKLSA + DFN E
Sbjct: 257 PGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLE 302
Score = 45 (20.9 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 23/97 (23%), Positives = 36/97 (37%)
Query: 14 AGVMGFFSNGSFFDHHQQPQLCMSFADNNIQSEALVVPSIGLIADFSHDTSNGKKAAAHT 73
A FF G + QQ L + + + + PS G D T K +
Sbjct: 87 AAKFSFFGCGEMMMNQQQSSLGVPDSTGLFLQDTQI-PS-GSKLDNGPLTDASKLVKERS 144
Query: 74 VESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKR 110
+ + S + + G+G T +G S +KRKR
Sbjct: 145 INNVSEDSQS-SGGNGHDDAKCGQTSSKGFSSKKRKR 180
>UNIPROTKB|Q84QW1 [details] [associations]
symbol:OJ1191_A10.109 "BHLH transcription
factor(GBOF-1)-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:AP008214
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003888
RefSeq:NP_001062289.1 UniGene:Os.10830
EnsemblPlants:LOC_Os08g41320.1 GeneID:4346087 KEGG:osa:4346087
eggNOG:NOG320619 OMA:ERISQRM ProtClustDB:CLSN2697487 Uniprot:Q84QW1
Length = 405
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 74/144 (51%), Positives = 96/144 (66%)
Query: 64 SNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVI 123
S+GK+ E ++ P SV + G G Q ++ K N + VE PK+ +
Sbjct: 147 SDGKRCKTGNGEKESSVKPKAEQAGSDSSVEDGGGGGQ----KQGKGKNAKPVEPPKDYV 202
Query: 124 HVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQN 183
HVRA+RGQATDSHSLAERVRRE+I++R++ LQDLVPGC K +G A+MLD IINYV+SLQ
Sbjct: 203 HVRARRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINYVQSLQR 262
Query: 184 QIEFLSMKLSAASMYYDFNSELDT 207
Q+EFLSMKL+ + DF S L T
Sbjct: 263 QVEFLSMKLATVNPL-DF-SNLPT 284
>TAIR|locus:2152551 [details] [associations]
symbol:AT5G48560 "AT5G48560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB015468 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 eggNOG:NOG283912
ProtClustDB:CLSN2684837 EMBL:AF488610 EMBL:BT002945 EMBL:BT005637
IPI:IPI00543091 RefSeq:NP_199667.1 UniGene:At.43769
ProteinModelPortal:Q9FJL4 SMR:Q9FJL4 IntAct:Q9FJL4 PaxDb:Q9FJL4
PRIDE:Q9FJL4 EnsemblPlants:AT5G48560.1 GeneID:834912
KEGG:ath:AT5G48560 TAIR:At5g48560 InParanoid:Q9FJL4 OMA:SASCYAT
PhylomeDB:Q9FJL4 Genevestigator:Q9FJL4 Uniprot:Q9FJL4
Length = 498
Score = 332 (121.9 bits), Expect = 6.8e-30, P = 6.8e-30
Identities = 71/114 (62%), Positives = 85/114 (74%)
Query: 105 GRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKT 164
G K NN + E PK+ IHVRA+RGQATDSHSLAERVRREKI ER++ LQDLVPGC K
Sbjct: 281 GEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKV 340
Query: 165 MGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS-MYYDFNSE-LDTTETM-PGTN 215
G A+MLD IINYV+SLQ Q+EFLSMKLS+ + DFN + L + + M P +N
Sbjct: 341 TGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKDVMIPSSN 394
>TAIR|locus:2095198 [details] [associations]
symbol:AT3G23690 "AT3G23690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
EMBL:AP000377 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AY065441 EMBL:AY096536
EMBL:EU550216 EMBL:EU550217 EMBL:EU550218 EMBL:EU550219
EMBL:EU550220 EMBL:EU550221 EMBL:EU550222 EMBL:EU550223
EMBL:EU550224 EMBL:EU550225 EMBL:EU550226 EMBL:EU550227
EMBL:EU550228 EMBL:EU550229 EMBL:EU550230 EMBL:EU550231
EMBL:EU550232 EMBL:EU550233 EMBL:EU550234 EMBL:EU550235
EMBL:EU550236 EMBL:EU550237 EMBL:EU550238 EMBL:EU550239
EMBL:AF488609 IPI:IPI00545445 RefSeq:NP_189011.2 UniGene:At.6666
ProteinModelPortal:Q9LK48 SMR:Q9LK48 PaxDb:Q9LK48 PRIDE:Q9LK48
EnsemblPlants:AT3G23690.1 GeneID:821950 KEGG:ath:AT3G23690
TAIR:At3g23690 eggNOG:NOG292697 InParanoid:Q9LK48 OMA:MEFNANA
PhylomeDB:Q9LK48 ProtClustDB:CLSN2917952 Genevestigator:Q9LK48
Uniprot:Q9LK48
Length = 371
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 81/185 (43%), Positives = 109/185 (58%)
Query: 63 TSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNK----GTGMQGLSGRKRKRNNE---RV 115
+ NGK++ A + + N + +G +K G+ G+ K +N+ +
Sbjct: 122 SGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKP 181
Query: 116 VEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVII 175
E PK+ IHVRA+RGQATDSHSLAER RREKI+ER+ LQDLVPGC + G AVMLD II
Sbjct: 182 PEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEII 241
Query: 176 NYVRSLQNQIEFLSMKLSAAS--MYYDFNSELDTTETMPGTNECDAQDMERMVREGYGGP 233
NYV+SLQ Q+EFLSMKL+ + M ++ N+ L T PG E Q + M P
Sbjct: 242 NYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQPG--ESLTQSLYAMACSEQRLP 299
Query: 234 SYFHS 238
S ++S
Sbjct: 300 SAYYS 304
>TAIR|locus:2079676 [details] [associations]
symbol:AT3G07340 "AT3G07340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC009853 EMBL:AK175369 EMBL:AK175496
EMBL:AK176563 EMBL:AK176663 EMBL:BT026497 EMBL:AF488595
IPI:IPI00521004 RefSeq:NP_187390.1 UniGene:At.40357
ProteinModelPortal:Q9SRT2 SMR:Q9SRT2 EnsemblPlants:AT3G07340.1
GeneID:819922 KEGG:ath:AT3G07340 GeneFarm:2908 TAIR:At3g07340
eggNOG:NOG283912 InParanoid:Q9SRT2 OMA:MENELFM PhylomeDB:Q9SRT2
ProtClustDB:CLSN2684837 Genevestigator:Q9SRT2 Uniprot:Q9SRT2
Length = 456
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 74/155 (47%), Positives = 101/155 (65%)
Query: 64 SNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERV--VEKPKE 121
S+G+ + +S N SP+ S S + + +K + N ++ ++ K+
Sbjct: 199 SSGELSRKRKTKSKQN-SPSAVSSSKEIEEKEDSDPKRC---KKSEENGDKTKSIDPYKD 254
Query: 122 VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSL 181
IHVRA+RGQATDSHSLAERVRREKI+ER++ LQDLVPGC K G A+MLD IINYV+SL
Sbjct: 255 YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSL 314
Query: 182 QNQIEFLSMKLSAASMYYDFNSE-LDTTETMPGTN 215
Q Q+EFLSMKLS+ + DFN + L + + P +N
Sbjct: 315 QRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSN 349
>UNIPROTKB|Q5VR96 [details] [associations]
symbol:P0038C05.31-1 "Os06g0275600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003044 RefSeq:NP_001057380.1 UniGene:Os.32526
EnsemblPlants:LOC_Os06g16400.1 EnsemblPlants:LOC_Os06g16400.2
GeneID:4340749 KEGG:osa:4340749 ProtClustDB:CLSN2697804
Uniprot:Q5VR96
Length = 437
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 67/104 (64%), Positives = 80/104 (76%)
Query: 102 GLSGRKRKRNNERVVEKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPG 160
G S K+ ++N PKE IHVRA+RGQAT+SHSLAERVRREKI+ER++ LQDLVPG
Sbjct: 239 GKSSGKQIKDN---AGSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPG 295
Query: 161 CYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSE 204
C K G AVMLD IINYV+SLQ Q+EFLSMKL++ + DFN E
Sbjct: 296 CSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLASVNPTLDFNIE 339
>UNIPROTKB|Q69JJ6 [details] [associations]
symbol:OSJNBa0026C08.22 "TA1 protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008215
ProtClustDB:CLSN2697804 EMBL:AP006169 EMBL:HQ858863 EMBL:AK121418
RefSeq:NP_001063455.1 UniGene:Os.38400
EnsemblPlants:LOC_Os09g29830.3 GeneID:4347355 KEGG:osa:4347355
Uniprot:Q69JJ6
Length = 428
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 89/206 (43%), Positives = 112/206 (54%)
Query: 11 DQPAG-VMGFFSNGSFFDHHQQP--QLCMSFADNNIQSEALVVPSIGLIA-DFSHDTSNG 66
DQ G G + G DHH+ FA N E VPS + D S S+
Sbjct: 127 DQAMGDAFGGTAEG-LMDHHRNVGNDKAEEFAGNG-HDE---VPSSEVAGGDCSSKGSDS 181
Query: 67 KKAAA--HTVESFMNLSPTPASGSGLLSVNNKGTGMQGL-----SGRKRKRNNERVVEKP 119
KK + + S S S SV++K G + G+ + + + E
Sbjct: 182 KKRRRPNEVMGTDQVHSSNLPSDSANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQ 241
Query: 120 KE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYV 178
KE IHVRA+RGQAT+SHSLAER+RREKI+ER++ LQDLVPGC K G AVMLD IINYV
Sbjct: 242 KEEYIHVRARRGQATNSHSLAERLRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINYV 301
Query: 179 RSLQNQIEFLSMKLSAASMYYDFNSE 204
+SLQ Q+EFLSMKL+ + D N E
Sbjct: 302 QSLQRQVEFLSMKLATVNPRLDLNIE 327
>UNIPROTKB|Q75M33 [details] [associations]
symbol:P0668H12.5 "BHLH transcription factor" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000142 EMBL:AC084818 EMBL:AC073405 EMBL:HQ858853
EMBL:AK065864 RefSeq:NP_001054390.1 UniGene:Os.23082
EnsemblPlants:LOC_Os05g01256.1 EnsemblPlants:LOC_Os05g01256.2
GeneID:4337537 KEGG:osa:4337537 eggNOG:NOG296531 Uniprot:Q75M33
Length = 339
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 63/101 (62%), Positives = 77/101 (76%)
Query: 107 KRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMG 166
K+K E P IHVRA+RGQATDSHSLAERVRREKI+ER++ LQ LVPGC K G
Sbjct: 162 KKKAKEAAGGEPPAGYIHVRARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTG 221
Query: 167 MAVMLDVIINYVRSLQNQIEFLSMKLSAAS-MYYDFNSELD 206
A+MLD II+YV+SLQNQ+EFLSMKL++ S + Y+F +D
Sbjct: 222 KALMLDEIISYVQSLQNQVEFLSMKLASLSPLMYEFGPGID 262
>UNIPROTKB|Q8GZV6 [details] [associations]
symbol:OJ1017C11.10 "Putative uncharacterized protein
OJ1017C11.10" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR001810
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50181 PROSITE:PS50888
SMART:SM00256 SMART:SM00353 GO:GO:0005634 SUPFAM:SSF81383
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR019955
PROSITE:PS50053 EMBL:AC135157 ProteinModelPortal:Q8GZV6
Gramene:Q8GZV6 Uniprot:Q8GZV6
Length = 776
Score = 308 (113.5 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 72/157 (45%), Positives = 99/157 (63%)
Query: 59 FSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKG-TGMQGLSGRKRKRNNERVVE 117
F + T + + + +++ + S SG G S++++ TG + E+ +
Sbjct: 558 FYNPTGDTQLSRNMSIDKCLKGSKRKGSGEGSSSLHSQEETGEMPQRELSMEHAGEKAGD 617
Query: 118 KP---KEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVI 174
+E +HVRAKRGQAT+SHSLAER RREKINER++ LQDLVPGC K G A+MLD I
Sbjct: 618 ADASREEYVHVRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEI 677
Query: 175 INYVRSLQNQIEFLSMKLSAASMYYDFNSELDTTETM 211
INYV+SLQ Q+EFLSMKLS S + NS+LD + +
Sbjct: 678 INYVQSLQRQVEFLSMKLSTISP--ELNSDLDLQDIL 712
>TAIR|locus:2172209 [details] [associations]
symbol:AT5G62610 "AT5G62610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 EMBL:AB020751 HOGENOM:HOG000238007 EMBL:AY072104
EMBL:AY123023 EMBL:AY084578 EMBL:AF488611 IPI:IPI00518025
RefSeq:NP_201067.1 UniGene:At.24534 UniGene:At.24682
ProteinModelPortal:Q9LV17 SMR:Q9LV17 PaxDb:Q9LV17 PRIDE:Q9LV17
EnsemblPlants:AT5G62610.1 GeneID:836382 KEGG:ath:AT5G62610
GeneFarm:2935 TAIR:At5g62610 eggNOG:NOG269855 InParanoid:Q9LV17
OMA:DDSSKMV PhylomeDB:Q9LV17 ProtClustDB:CLSN2916786
Genevestigator:Q9LV17 Uniprot:Q9LV17
Length = 281
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 60/111 (54%), Positives = 78/111 (70%)
Query: 86 SGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRRE 145
SG+G S+ +G G G K + E PK+ IHVRA+RGQATD HSLAER RRE
Sbjct: 115 SGNGDGSMRPEGETSSGGGGSKATEQKNKP-EPPKDYIHVRARRGQATDRHSLAERARRE 173
Query: 146 KINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS 196
KI+E++ LQD++PGC K +G A++LD IINY++SLQ Q+EFLSMKL +
Sbjct: 174 KISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVN 224
>TAIR|locus:2201906 [details] [associations]
symbol:AT1G10120 "AT1G10120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC004122 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT012655 EMBL:AK221806 EMBL:AK229309
EMBL:AK230347 EMBL:AF488606 IPI:IPI00541831 PIR:T00632
RefSeq:NP_172483.4 UniGene:At.43391 UniGene:At.69296
ProteinModelPortal:Q6NKN9 SMR:Q6NKN9 EnsemblPlants:AT1G10120.1
GeneID:837549 KEGG:ath:AT1G10120 TAIR:At1g10120 eggNOG:NOG271189
HOGENOM:HOG000090626 InParanoid:Q6NKN9 OMA:GESSHED PhylomeDB:Q6NKN9
ProtClustDB:CLSN2681496 Genevestigator:Q6NKN9 Uniprot:Q6NKN9
Length = 366
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 62/91 (68%), Positives = 75/91 (82%)
Query: 117 EKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVII 175
E PKE IH+RA+RGQAT+SHSLAERVRREKI+ER+R LQ+LVPGC K G AVMLD II
Sbjct: 197 EAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 256
Query: 176 NYVRSLQNQIEFLSMKLSAASMYYDFNSELD 206
NYV+SLQ Q+EFLSMKL A++ + N ++D
Sbjct: 257 NYVQSLQQQVEFLSMKL--ATVNPEINIDID 285
>TAIR|locus:2202867 [details] [associations]
symbol:BPEp "AT1G59640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048446 "petal morphogenesis" evidence=IMP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009753 "response to jasmonic
acid stimulus" evidence=RCA] [GO:0009827 "plant-type cell wall
modification" evidence=RCA] [GO:0009860 "pollen tube growth"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0048441 "petal development" evidence=RCA] [GO:0048443 "stamen
development" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AM269753 EMBL:AM269754
EMBL:AC009317 EMBL:BT003964 EMBL:BT005064 EMBL:AY086373
EMBL:AB028232 IPI:IPI00530097 IPI:IPI00531813 PIR:B96620 PIR:T52428
RefSeq:NP_564749.1 RefSeq:NP_849829.1 UniGene:At.455
ProteinModelPortal:Q0JXE7 SMR:Q0JXE7 IntAct:Q0JXE7 STRING:Q0JXE7
PRIDE:Q0JXE7 EnsemblPlants:AT1G59640.2 GeneID:842254
KEGG:ath:AT1G59640 TAIR:At1g59640 eggNOG:NOG296410
InParanoid:Q0JXE7 OMA:RGASPEW PhylomeDB:Q0JXE7
ProtClustDB:CLSN2688917 Genevestigator:Q0JXE7 GO:GO:0048446
Uniprot:Q0JXE7
Length = 343
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 57/92 (61%), Positives = 75/92 (81%)
Query: 105 GRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKT 164
G + ++ +++ E K+ IHVRA+RGQATDSHSLAER RREKI+ER++ LQDLVPGC K
Sbjct: 117 GTETEQKKQQM-EPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 175
Query: 165 MGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS 196
+G A++LD IINY++SLQ Q+EFLSMKL A +
Sbjct: 176 IGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 207
>TAIR|locus:2139484 [details] [associations]
symbol:CIB1 "AT4G34530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0009911 "positive regulation of flower development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161585 EMBL:AL023094
HOGENOM:HOG000238007 EMBL:AF488596 EMBL:AK117846 EMBL:AY120741
EMBL:BT005313 IPI:IPI00519970 PIR:T05273 RefSeq:NP_195179.2
UniGene:At.48937 ProteinModelPortal:Q8GY61 SMR:Q8GY61
DIP:DIP-59356N IntAct:Q8GY61 PRIDE:Q8GY61 EnsemblPlants:AT4G34530.1
GeneID:829604 KEGG:ath:AT4G34530 TAIR:At4g34530 eggNOG:NOG251551
InParanoid:Q8GY61 OMA:SGYSHEM PhylomeDB:Q8GY61
ProtClustDB:CLSN2915063 Genevestigator:Q8GY61 Uniprot:Q8GY61
Length = 335
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 69/126 (54%), Positives = 84/126 (66%)
Query: 116 VEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVII 175
+EK + IHVRA+RGQATDSHS+AERVRREKI+ER++ LQDLVPGC K G A MLD II
Sbjct: 164 LEKT-DYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEII 222
Query: 176 NYVRSLQNQIEFLSMKLSAASMYYDFNSELDTTETMPGTNECDAQDMERMVREGYGGPSY 235
NYV+SLQ QIEFLSMKL+ + DF+ + + + T E MV GY
Sbjct: 223 NYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEVASTPMTVVPSPE-MVLSGYSH-EM 280
Query: 236 FHSAWS 241
HS +S
Sbjct: 281 VHSGYS 286
>UNIPROTKB|Q6Z2G7 [details] [associations]
symbol:P0680A05.9 "Putative bHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008208 eggNOG:NOG251551 EMBL:AP005323 EMBL:AK119183
RefSeq:NP_001047868.1 UniGene:Os.7751
EnsemblPlants:LOC_Os02g47660.1 GeneID:4330462 KEGG:osa:4330462
OMA:TVESLCQ ProtClustDB:CLSN2693116 Uniprot:Q6Z2G7
Length = 361
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 57/82 (69%), Positives = 70/82 (85%)
Query: 121 EVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRS 180
+ IHVRA+RGQATDSHSLAERVRRE+I+ER+R LQ+LVPGC K G A MLD IINYV+S
Sbjct: 160 DYIHVRARRGQATDSHSLAERVRRERISERMRYLQELVPGCNKVTGKAGMLDEIINYVQS 219
Query: 181 LQNQIEFLSMKLSAASMYYDFN 202
LQ Q+EFLSMK++A++ +FN
Sbjct: 220 LQKQVEFLSMKIAASNPVVNFN 241
>UNIPROTKB|Q69WS3 [details] [associations]
symbol:OJ1118_E12.15 "Putative bHLH protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003743
ProteinModelPortal:Q69WS3 Gramene:Q69WS3 Uniprot:Q69WS3
Length = 268
Score = 265 (98.3 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 54/88 (61%), Positives = 68/88 (77%)
Query: 104 SGRKRKRNNERVV--EKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPG 160
SG K ++ E PK+ IHVRA+RGQATDSHSLAER RREKI+ER++ LQDLVPG
Sbjct: 104 SGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 163
Query: 161 CYKTMGMAVMLDVIINYVRSLQNQIEFL 188
C K +G A +LD IINY++SLQ+Q+EF+
Sbjct: 164 CNKVIGKASVLDEIINYIQSLQHQVEFM 191
Score = 38 (18.4 bits), Expect = 2.1e-25, Sum P(2) = 2.1e-25
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 93 VNNKGTGMQGL--SGRKRKRNN 112
V ++G+G +G SGR+R R++
Sbjct: 27 VTDQGSGSRGGGGSGRRRPRSD 48
>TAIR|locus:2115200 [details] [associations]
symbol:BEE2 "AT4G36540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
PROSITE:PS00678 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161589 EMBL:Z99708
EMBL:AF488591 EMBL:AF370231 EMBL:AY059122 EMBL:AY054588
EMBL:BT000388 EMBL:AY084997 EMBL:AY138254 IPI:IPI00540245
IPI:IPI00548266 PIR:D85431 RefSeq:NP_195372.1 RefSeq:NP_849508.1
UniGene:At.25403 ProteinModelPortal:Q93VJ4 SMR:Q93VJ4 IntAct:Q93VJ4
PRIDE:Q93VJ4 EnsemblPlants:AT4G36540.1 GeneID:829806
KEGG:ath:AT4G36540 TAIR:At4g36540 eggNOG:NOG240651
InParanoid:Q93VJ4 OMA:ELECHID PhylomeDB:Q93VJ4
ProtClustDB:CLSN2685556 Genevestigator:Q93VJ4 Uniprot:Q93VJ4
Length = 304
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 57/93 (61%), Positives = 72/93 (77%)
Query: 103 LSGRKRKRNNERV--VEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPG 160
+ G+ N E ++KP + IHVRA+RG+ATD HSLAER RREKI+++++CLQD+VPG
Sbjct: 118 MKGKSNMSNTETSSEIQKP-DYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPG 176
Query: 161 CYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLS 193
C K G A MLD IINYV+SLQ Q+EFLSMKLS
Sbjct: 177 CNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLS 209
>UNIPROTKB|Q6ZCV8 [details] [associations]
symbol:P0028A08.20 "Os08g0487700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000145 EMBL:AP004557 RefSeq:NP_001062102.1 UniGene:Os.60678
EnsemblPlants:LOC_Os08g38080.1 GeneID:4345892 KEGG:osa:4345892
eggNOG:NOG275480 Uniprot:Q6ZCV8
Length = 365
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 59/101 (58%), Positives = 76/101 (75%)
Query: 105 GRKRKRNNERVVEKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYK 163
G+ + + + E KE HVRA++GQAT++HSLAER+RREKI+ER++ LQDLVPGC K
Sbjct: 155 GKSKGKGAKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSK 214
Query: 164 TMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSE 204
G A+MLD IINYV+SLQ Q+EFLSMKLSA + D + E
Sbjct: 215 VTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIE 255
>UNIPROTKB|Q84LH4 [details] [associations]
symbol:OSJNBb0011H13.2 "Putative Helix-loop-helix
DNA-binding domain containing protein" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 EMBL:AC120983
EMBL:AC135956 RefSeq:NP_001051150.1 UniGene:Os.24540
EnsemblPlants:LOC_Os03g51910.1 GeneID:4333984 KEGG:osa:4333984
eggNOG:NOG262475 OMA:SKQMMLS ProtClustDB:CLSN2694257 Uniprot:Q84LH4
Length = 327
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 120 KEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVR 179
++ +HVRAKRGQAT+SHSLAER+RR+KI+ER++ LQDLVPGC K G AVMLD IINYV+
Sbjct: 142 EDYVHVRAKRGQATNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINYVQ 201
Query: 180 SLQNQIEFLSMKLSAASMYYDFNSE 204
SLQ Q+EFLSMKL+ + F+ E
Sbjct: 202 SLQRQVEFLSMKLATVNPELSFDIE 226
>UNIPROTKB|Q84T08 [details] [associations]
symbol:OSJNBa0087C10.10 "BHLH transcription factor,
putative, expressed" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC108906 RefSeq:NP_001051605.1
UniGene:Os.33544 STRING:Q84T08 EnsemblPlants:LOC_Os03g58830.1
GeneID:4334471 KEGG:osa:4334471 OMA:GTSTSEW ProtClustDB:CLSN2694415
Uniprot:Q84T08
Length = 265
Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
Identities = 56/83 (67%), Positives = 69/83 (83%)
Query: 117 EKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVII 175
E PK+ IHVRA+RGQATDSHSLAER RREKI+ER++ LQDLVPGC K +G A +LD II
Sbjct: 127 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKASVLDEII 186
Query: 176 NYVRSLQNQIEFLSMKLSAASMY 198
NY+++LQ Q+EFLSMKL A + +
Sbjct: 187 NYIQALQRQVEFLSMKLEAVNAH 209
>TAIR|locus:2053766 [details] [associations]
symbol:AT2G42300 "AT2G42300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC005956 EMBL:AY065411 EMBL:AY096521 EMBL:AK175584
EMBL:AK176019 EMBL:AK176634 EMBL:AF488583 IPI:IPI00532521
PIR:C84852 RefSeq:NP_850368.1 UniGene:At.28495
ProteinModelPortal:Q8VZ02 SMR:Q8VZ02 EnsemblPlants:AT2G42300.1
GeneID:818831 KEGG:ath:AT2G42300 TAIR:At2g42300 eggNOG:NOG301522
HOGENOM:HOG000037005 InParanoid:Q8VZ02 OMA:PEWGREE PhylomeDB:Q8VZ02
ProtClustDB:CLSN2680198 Genevestigator:Q8VZ02 Uniprot:Q8VZ02
Length = 327
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 69/189 (36%), Positives = 108/189 (57%)
Query: 58 DFSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRK-----RNN 112
+FS +T+N ++ + + PA ++ N+ R++K + N
Sbjct: 114 NFSGETANS--LPSNPGANLDRVKAEPAETDSMVENQNQSYSSGKRKEREKKVKSSTKKN 171
Query: 113 ERVVEKPK-EVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVML 171
+ VE K +HVRA+RGQATD+HSLAER RREKIN R++ LQ+LVPGC K G A++L
Sbjct: 172 KSSVESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVL 231
Query: 172 DVIINYVRSLQNQIEFLSMKLSAASMYYDFNSEL----DTTETMPGTNECDA-QDMERMV 226
D IIN+V++LQ Q+E LSM+L+A + DFN + + M G+ ++ +++
Sbjct: 232 DEIINHVQTLQRQVEMLSMRLAAVNPRIDFNLDSILASENGSLMDGSFNAESYHQLQQWP 291
Query: 227 REGYGGPSY 235
+GY P +
Sbjct: 292 FDGYHQPEW 300
>TAIR|locus:2076581 [details] [associations]
symbol:AT3G57800 "AT3G57800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL049660 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000037005 ProtClustDB:CLSN2680198
EMBL:AF488593 EMBL:AL132977 EMBL:AY139773 EMBL:BT003037
EMBL:AY085849 IPI:IPI00532305 IPI:IPI00535946 PIR:T46002
RefSeq:NP_567057.2 RefSeq:NP_850745.1 UniGene:At.34797
ProteinModelPortal:Q3EAI1 EnsemblPlants:AT3G57800.1 GeneID:825530
KEGG:ath:AT3G57800 TAIR:At3g57800 eggNOG:NOG254513
InParanoid:Q3EAI1 OMA:MVASANL PhylomeDB:Q3EAI1
Genevestigator:Q3EAI1 Uniprot:Q3EAI1
Length = 426
Score = 186 (70.5 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 54/156 (34%), Positives = 78/156 (50%)
Query: 15 GVMGFFSNGSFFDHHQQPQLCMSFADN-NIQSEALVVPSIGLIADFSHDTSNGKKAAAHT 73
G + F SN + + + + N NI E P+ + ++ S + K A T
Sbjct: 92 GTLAFPSNSVLMERAARFSVIATEQQNGNISGET---PTSSVPSNSSANLDRVKTEPAET 148
Query: 74 VESFMNLSPT------PASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRA 127
S +S + P + K +G S K+ +++E + P +HVRA
Sbjct: 149 DSSQRLISDSAIENQIPCPNQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLP--YVHVRA 206
Query: 128 KRGQATDSHSLAERVRREKINERLRCLQDLVPGCYK 163
+RGQATDSHSLAER RREKIN R++ LQ+LVPGC K
Sbjct: 207 RRGQATDSHSLAERARREKINARMKLLQELVPGCDK 242
Score = 111 (44.1 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 27/61 (44%), Positives = 41/61 (67%)
Query: 150 RLRCLQDLVPGCY---KTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSELD 206
++ C +DL+ + + G A++LD IIN+V+SLQ Q+E LSM+L+A + DFN LD
Sbjct: 274 KVSC-EDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVNPRIDFN--LD 330
Query: 207 T 207
T
Sbjct: 331 T 331
>UNIPROTKB|Q7Y1H4 [details] [associations]
symbol:OSJNBa0094F01.11 "Putative uncharacterized protein
OSJNBa0094F01.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0009567
EMBL:AC093713 EMBL:AK104412 RefSeq:NP_001051563.1 UniGene:Os.27522
EnsemblPlants:LOC_Os03g58330.1 GeneID:4334429 KEGG:osa:4334429
OMA:TDGTERQ ProtClustDB:CLSN2694399 Uniprot:Q7Y1H4
Length = 294
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 57/133 (42%), Positives = 77/133 (57%)
Query: 66 GKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTG-MQGLSGRKRKRNNERV-VEKPKEVI 123
G KA TV+ L P G G+ N + T Q ++ K+ V + P
Sbjct: 73 GSKADRETVQ-LTGLFPPVFGGGGVQPPNLRPTPPTQVFHPQQSKQGGAAVGPQPPAPRP 131
Query: 124 HVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQN 183
VRA+RGQATD HS+AER+RRE+I ER+R LQ+LVP KT A MLD I++YV+ L+
Sbjct: 132 KVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKT-DRAAMLDEILDYVKFLRL 190
Query: 184 QIEFLSM-KLSAA 195
Q++ LSM +L A
Sbjct: 191 QVKVLSMSRLGGA 203
>TAIR|locus:2047555 [details] [associations]
symbol:LRL1 "AT2G24260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC005967
HOGENOM:HOG000239571 GO:GO:0080147 EMBL:AF488599 EMBL:AK176370
EMBL:AK176390 EMBL:BT026512 IPI:IPI00528969 PIR:E84634
RefSeq:NP_180003.1 UniGene:At.20792 ProteinModelPortal:Q9ZUG9
SMR:Q9ZUG9 EnsemblPlants:AT2G24260.1 GeneID:816961
KEGG:ath:AT2G24260 TAIR:At2g24260 eggNOG:NOG284260
InParanoid:Q9ZUG9 OMA:STATCHS PhylomeDB:Q9ZUG9
ProtClustDB:CLSN2683027 Genevestigator:Q9ZUG9 Uniprot:Q9ZUG9
Length = 350
Score = 202 (76.2 bits), Expect = 6.6e-16, P = 6.6e-16
Identities = 54/137 (39%), Positives = 72/137 (52%)
Query: 61 HDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPK 120
H NG A S N SG GL++ + V P+
Sbjct: 78 HALYNGFSVAG----SLPNFQIPQGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQ 133
Query: 121 EVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRS 180
+RA+RGQATD HS+AER+RRE+I ER++ LQ+LVP KT A MLD II+YV+
Sbjct: 134 SRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKT-DKASMLDEIIDYVKF 192
Query: 181 LQNQIEFLSM-KLSAAS 196
LQ Q++ LSM +L A+
Sbjct: 193 LQLQVKVLSMSRLGGAA 209
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 181 (68.8 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 42/70 (60%), Positives = 53/70 (75%)
Query: 126 RAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
RA+RGQATD HS+AER+RREKI+ER++ LQ LVP K A MLD II+YV+ LQ Q+
Sbjct: 240 RARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKA-DKASMLDEIIDYVKFLQLQV 298
Query: 186 EFLSM-KLSA 194
+ LSM +L A
Sbjct: 299 KVLSMSRLGA 308
Score = 41 (19.5 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 65 NGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRN 111
N A+ H + F+N P+ G+ L ++ G G GL ++++N
Sbjct: 132 NAAIASLHDSKEFLNGGSIPSFGTVLQAL---GAG--GLKAAQQEQN 173
>TAIR|locus:2147760 [details] [associations]
symbol:LRL3 "AT5G58010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0080147 "root hair cell development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P36956 HOGENOM:HOG000239571 GO:GO:0080147
EMBL:AB026635 EMBL:AF488614 IPI:IPI00540554 RefSeq:NP_200609.1
UniGene:At.29300 ProteinModelPortal:Q9LSQ3 SMR:Q9LSQ3 PRIDE:Q9LSQ3
EnsemblPlants:AT5G58010.1 GeneID:835913 KEGG:ath:AT5G58010
TAIR:At5g58010 eggNOG:NOG252939 InParanoid:Q9LSQ3 OMA:TEQRVAK
PhylomeDB:Q9LSQ3 ProtClustDB:CLSN2916934 Genevestigator:Q9LSQ3
Uniprot:Q9LSQ3
Length = 297
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 47/82 (57%), Positives = 59/82 (71%)
Query: 115 VVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVI 174
V +KP+ VRA+RGQATD HS+AER+RRE+I ER++ LQ+LVP KT A MLD I
Sbjct: 93 VRQKPR----VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKT-DKASMLDEI 147
Query: 175 INYVRSLQNQIEFLSM-KLSAA 195
I YVR LQ Q++ LSM +L A
Sbjct: 148 IEYVRFLQLQVKVLSMSRLGGA 169
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 201 (75.8 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 48/90 (53%), Positives = 62/90 (68%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
VRA+RGQATD HS+AER+RREKI++R++ LQ+LVP KT A MLD II+YV+ LQ Q
Sbjct: 314 VRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKT-NKASMLDEIIDYVKFLQLQ 372
Query: 185 IEFLSM-KLSAASMYYDFNSELDTTETMPG 213
++ LSM +L AA +E T PG
Sbjct: 373 VKVLSMSRLGAAEAVVPLLTETQTES--PG 400
>TAIR|locus:2132303 [details] [associations]
symbol:UNE12 "AT4G02590" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0031347 "regulation of defense response"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0007275 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000239571
ProtClustDB:CLSN2687635 EMBL:AC002330 EMBL:AL161494 GO:GO:0031347
GO:GO:0009567 EMBL:AF488592 EMBL:AF367328 EMBL:AY143951
EMBL:AY088218 IPI:IPI00545077 IPI:IPI00892352 PIR:T01090
RefSeq:NP_001031577.1 RefSeq:NP_001118919.1 RefSeq:NP_567245.1
UniGene:At.20028 ProteinModelPortal:O22768 SMR:O22768 IntAct:O22768
PaxDb:O22768 PRIDE:O22768 EnsemblPlants:AT4G02590.1
EnsemblPlants:AT4G02590.2 GeneID:828126 KEGG:ath:AT4G02590
TAIR:At4g02590 eggNOG:euNOG02041 InParanoid:O22768 OMA:PAWEKWS
PhylomeDB:O22768 Genevestigator:O22768 Uniprot:O22768
Length = 310
Score = 193 (73.0 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 52/123 (42%), Positives = 76/123 (61%)
Query: 80 LSPTPASGSGL-LS---VNNKGTGMQGL-SGRKRKRNNERVVEKPKEVI-HVRAKRGQAT 133
L P GSG S V+N+ + M+ + G+ ++ +P + VRA+RGQAT
Sbjct: 95 LRPEGGHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQAT 154
Query: 134 DSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSM-KL 192
D HS+AER+RRE+I ER+R LQ+LVP KT A M+D I++YV+ L+ Q++ LSM +L
Sbjct: 155 DPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSMSRL 213
Query: 193 SAA 195
A
Sbjct: 214 GGA 216
>TAIR|locus:2126624 [details] [associations]
symbol:LRL2 "AT4G30980" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL022198
EMBL:AL161578 HOGENOM:HOG000239571 GO:GO:0080147
ProtClustDB:CLSN2683027 EMBL:AF488601 IPI:IPI00524968 PIR:G85362
RefSeq:NP_194827.2 UniGene:At.31786 ProteinModelPortal:Q8S3D5
SMR:Q8S3D5 EnsemblPlants:AT4G30980.1 GeneID:829223
KEGG:ath:AT4G30980 TAIR:At4g30980 eggNOG:NOG295725
InParanoid:O65552 OMA:GGSHENT PhylomeDB:Q8S3D5
Genevestigator:Q8S3D5 Uniprot:Q8S3D5
Length = 310
Score = 192 (72.6 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 46/80 (57%), Positives = 59/80 (73%)
Query: 118 KPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINY 177
KPK VRA+RGQATD HS+AER+RRE+I ER++ LQ+LVP KT A MLD II+Y
Sbjct: 127 KPK----VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKT-DKASMLDEIIDY 181
Query: 178 VRSLQNQIEFLSM-KLSAAS 196
V+ LQ Q++ LSM +L A+
Sbjct: 182 VKFLQLQVKVLSMSRLGGAA 201
>TAIR|locus:2007534 [details] [associations]
symbol:AT1G03040 "AT1G03040" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF251692
EMBL:AC006550 EMBL:AY054469 EMBL:AY114633 IPI:IPI00529284
PIR:B86161 RefSeq:NP_001184895.1 RefSeq:NP_563672.1
UniGene:At.20497 ProteinModelPortal:Q93Y00 SMR:Q93Y00 IntAct:Q93Y00
PaxDb:Q93Y00 PRIDE:Q93Y00 EnsemblPlants:AT1G03040.1 GeneID:839446
KEGG:ath:AT1G03040 TAIR:At1g03040 eggNOG:NOG281566
HOGENOM:HOG000239571 InParanoid:Q93Y00 OMA:SIVKPEM PhylomeDB:Q93Y00
ProtClustDB:CLSN2687635 Genevestigator:Q93Y00 Uniprot:Q93Y00
Length = 302
Score = 188 (71.2 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 42/88 (47%), Positives = 61/88 (69%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
VRA+RGQATD HS+AER+RRE+I ER+R LQ+LVP KT A M+D I++YV+ L+ Q
Sbjct: 144 VRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVDYVKFLRLQ 202
Query: 185 IEFLSM-KLSAASMYYDFNSELDTTETM 211
++ LSM +L A +E+ + ++
Sbjct: 203 VKVLSMSRLGGAGAVAPLVTEMPLSSSV 230
>TAIR|locus:2141573 [details] [associations]
symbol:FBH2 "AT4G09180" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AL161514 HOGENOM:HOG000095218 ProtClustDB:CLSN2679906
EMBL:AF488613 EMBL:BT010423 EMBL:AK230384 IPI:IPI00545642
PIR:B85093 RefSeq:NP_192657.1 UniGene:At.33710
ProteinModelPortal:Q9M0R0 SMR:Q9M0R0 PaxDb:Q9M0R0 PRIDE:Q9M0R0
EnsemblPlants:AT4G09180.1 GeneID:826499 KEGG:ath:AT4G09180
TAIR:At4g09180 eggNOG:NOG277140 InParanoid:Q9M0R0 OMA:MENLMED
PhylomeDB:Q9M0R0 Genevestigator:Q9M0R0 Uniprot:Q9M0R0
Length = 262
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 57/172 (33%), Positives = 83/172 (48%)
Query: 18 GFFSNGSFFDHHQQPQLCMSFADNNIQSEALVVPSIGLIADFSHDTSNGKKAAAHTVESF 77
G + G F + P +S +D IQS + L + D S G K + +E+
Sbjct: 85 GLYQQGGFHRQNSTPADFLSGSDGFIQSFGIQANYDYLSGNI--DVSPGSKRSRE-MEAL 141
Query: 78 MNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHS 137
+ + G S TG+ +S N E ++E VRAKRG AT S
Sbjct: 142 FSSPEFTSQMKGEQSSGQVPTGVSSMSDM----NMENLMED-SVAFRVRAKRGCATHPRS 196
Query: 138 LAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLS 189
+AERVRR +I++R+R LQ+LVP K A ML+ + YV+ LQ QI+ L+
Sbjct: 197 IAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELT 248
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 181 (68.8 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 73/208 (35%), Positives = 98/208 (47%)
Query: 39 ADNNI-QSEALVVPSIGLIADFSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKG 97
AD +I S A+V P+ L AD D AA E P A +G S G
Sbjct: 134 ADLSICGSNAVVAPA--LPADDDDDID---AAAPREEEEEEEEGPGAARAAGASSSGGSG 188
Query: 98 TGMQGLSGRKRKRNNERVVEKPKEVI-HVR------AKRG-QATDSHSLAERVRREKINE 149
+G G S KR E +V+ EV R AKR +A + H+L+ER RR++INE
Sbjct: 189 SG-SG-SYPLFKRGREELVDSLSEVADETRPSKRPAAKRRTRAAEVHNLSERRRRDRINE 246
Query: 150 RLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSELD--- 206
+LR LQ+LVP C KT A +LD I Y++SLQ Q++ + M M + +L
Sbjct: 247 KLRALQELVPHCNKT-DKASILDEAIEYLKSLQMQVQIMWMTTGIVPMMFPGTHQLMPPM 305
Query: 207 ----TTETMPGTNECDAQDMERMVREGY 230
T MPG AQ + +M R Y
Sbjct: 306 GMGLNTACMPGAQ---AQGLNQMQRTTY 330
>UNIPROTKB|Q6EPZ6 [details] [associations]
symbol:P0014G10.34 "BHLH transcription factor PTF1-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 HOGENOM:HOG000239571 EMBL:AP005784
RefSeq:NP_001175840.1 UniGene:Os.59658
EnsemblPlants:LOC_Os09g25040.1 GeneID:9272478 KEGG:osa:9272478
OMA:SMSVLTA Uniprot:Q6EPZ6
Length = 499
Score = 177 (67.4 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 38/64 (59%), Positives = 49/64 (76%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTM--GMAVMLDVIINYVRSLQ 182
VRA+RGQATD HS+AER+RRE+I ER++ LQ+LVP K M A MLD II+YV+ LQ
Sbjct: 250 VRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKLMQTDKASMLDEIIDYVKFLQ 309
Query: 183 NQIE 186
Q++
Sbjct: 310 LQVK 313
>UNIPROTKB|Q8S490 [details] [associations]
symbol:rau1 "Transcription factor RAU1" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF465824
ProteinModelPortal:Q8S490 Gramene:Q8S490 Genevestigator:Q8S490
Uniprot:Q8S490
Length = 150
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
+RAKRG AT S+AERVRR +I+ER+R LQ+LVP K A MLD+ ++Y++ LQ Q
Sbjct: 69 IRAKRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQ 128
Query: 185 IEFLS 189
++ L+
Sbjct: 129 VKGLN 133
>UNIPROTKB|Q6Z1F9 [details] [associations]
symbol:OSJNBa0033D24.39 "BHLH transcription factor-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 GO:GO:0005634
EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP005439
EMBL:AP004464 RefSeq:NP_001062365.1 UniGene:Os.89290 GeneID:4346166
KEGG:osa:4346166 Uniprot:Q6Z1F9
Length = 143
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 151 LRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS-MYYDFNSELD 206
+R LQ LVPGC K G A++LD IINYV+SLQNQ+EFLSM++++ S + Y F + D
Sbjct: 1 MRMLQALVPGCDKVTGKALILDEIINYVQSLQNQVEFLSMRIASMSPVLYGFGMDSD 57
>TAIR|locus:2117773 [details] [associations]
symbol:AT4G28790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 EMBL:BT015828
EMBL:BT020214 IPI:IPI00521625 IPI:IPI00529771 IPI:IPI00915578
PIR:T04520 RefSeq:NP_194608.3 RefSeq:NP_974634.1 UniGene:At.31988
ProteinModelPortal:Q9SVU6 SMR:Q9SVU6 PRIDE:Q9SVU6
EnsemblPlants:AT4G28790.1 GeneID:829000 KEGG:ath:AT4G28790
TAIR:At4g28790 HOGENOM:HOG000240264 InParanoid:Q9SVU6
PhylomeDB:Q9SVU6 ProtClustDB:CLSN2680993 Genevestigator:Q9SVU6
Uniprot:Q9SVU6
Length = 413
Score = 168 (64.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 41/88 (46%), Positives = 55/88 (62%)
Query: 106 RKRKRNNERVVEKP--KEVIH-VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCY 162
RKRK E VE +E +KR +A H L+ER RR+KINE ++ LQ+L+P C
Sbjct: 249 RKRKTREETNVENQGTEEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCT 308
Query: 163 KTMGMAVMLDVIINYVRSLQNQIEFLSM 190
KT + MLD +I YV+SLQ+QI+ SM
Sbjct: 309 KT-DRSSMLDDVIEYVKSLQSQIQMFSM 335
Score = 36 (17.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 62 DTSNGKKAAAHTVESFMNLS 81
D G A E+FMN+S
Sbjct: 136 DRPTGHILAERRAENFMNIS 155
>TAIR|locus:4010713915 [details] [associations]
symbol:AT4G28811 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
HOGENOM:HOG000240264 EMBL:AJ519811 IPI:IPI00518617 PIR:H85335
PIR:T04518 RefSeq:NP_001078462.1 UniGene:At.46149
ProteinModelPortal:Q8GT73 SMR:Q8GT73 PRIDE:Q8GT73
EnsemblPlants:AT4G28811.1 GeneID:5008170 KEGG:ath:AT4G28811
TAIR:At4g28811 eggNOG:NOG314238 PhylomeDB:Q8GT73
ProtClustDB:CLSN2699107 Genevestigator:Q8GT73 Uniprot:Q8GT73
Length = 544
Score = 172 (65.6 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 109 KRNNERVVE-KPKEVIH--VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTM 165
K+ E + E + E H KR +A D H+L+ER RRE+INER++ LQ+L+P C KT
Sbjct: 332 KKREETIAEIQGTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTD 391
Query: 166 GMAVMLDVIINYVRSLQNQIEFLSM 190
++ ML+ +I YV+SLQ QI+ +SM
Sbjct: 392 KVS-MLEDVIEYVKSLQLQIQMMSM 415
>UNIPROTKB|Q69WX7 [details] [associations]
symbol:P0417G12.19 "Basic helix-loop-helix protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 GO:GO:0005634 Gene3D:4.10.280.10
EMBL:AP003626 EMBL:AP003711 EMBL:AK070970
EnsemblPlants:LOC_Os06g41060.1 OMA:KNGMDLE Uniprot:Q69WX7
Length = 154
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 151 LRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSELD---T 207
+ L++LVPGC K G A++LD IIN+V+SLQ Q+E+LSM+L+A + DF LD T
Sbjct: 1 MELLKELVPGCSKVSGTALVLDEIINHVQSLQRQVEYLSMRLAAVNPRVDFGG-LDNFLT 59
Query: 208 TET--MPGTNECDAQDMERM 225
TE + G N + D+E++
Sbjct: 60 TECGRITGLNYKNGMDLEQV 79
>TAIR|locus:2008693 [details] [associations]
symbol:FBH1 "AT1G35460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488612 EMBL:AC023064 EMBL:AF411791 EMBL:AY093794
IPI:IPI00538359 PIR:F86475 RefSeq:NP_174776.1 UniGene:At.18017
ProteinModelPortal:Q9C8P8 SMR:Q9C8P8 PRIDE:Q9C8P8
EnsemblPlants:AT1G35460.1 GeneID:840438 KEGG:ath:AT1G35460
TAIR:At1g35460 eggNOG:NOG263612 HOGENOM:HOG000095218
InParanoid:Q9C8P8 OMA:NLCLTEL PhylomeDB:Q9C8P8
ProtClustDB:CLSN2679906 Genevestigator:Q9C8P8 Uniprot:Q9C8P8
Length = 259
Score = 163 (62.4 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 61/185 (32%), Positives = 90/185 (48%)
Query: 8 TSDDQPAGVMGFFSNGSFFDHHQQPQLCMSFADNNIQSEALVVPSIGLIADFSHDTSNGK 67
TS D + G ++HHQ F N S A + G D + ++ G
Sbjct: 70 TSRDDSFEFLSSVEQG-LYNHHQGG----GFHRQN-SSPADFLSGSGSGTD-GYFSNFGI 122
Query: 68 KAAAHTVESFMNLSPTPASGS--GLLSVNNKGTGMQG-LSGRKRKRNNERVVEKPKEVIH 124
A + + +++SPT S S K M G +SG N +++ E
Sbjct: 123 PANYDYLSTNVDISPTKRSRDMETQFSSQLKEEQMSGGISGMM-DMNMDKIFEDSVPC-R 180
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
VRAKRG AT S+AERVRR +I++R+R LQ+LVP K A ML+ + YV++LQ+Q
Sbjct: 181 VRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQ 240
Query: 185 IEFLS 189
I+ L+
Sbjct: 241 IQELT 245
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 167 (63.8 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 118 KPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINY 177
K V KR +A + H+L+ER RR++INER++ LQ+L+P C K+ A MLD I Y
Sbjct: 271 KQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEY 329
Query: 178 VRSLQNQIEFLSMKLSAASMYY 199
++SLQ QI+ +SM M Y
Sbjct: 330 MKSLQLQIQMMSMGCGMMPMMY 351
>TAIR|locus:2026037 [details] [associations]
symbol:FBH3 "AT1G51140" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0048573 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC079828 EMBL:AY034941 EMBL:AY063120
IPI:IPI00519239 PIR:H96548 RefSeq:NP_564583.1 UniGene:At.19155
ProteinModelPortal:Q9C690 SMR:Q9C690 PaxDb:Q9C690 PRIDE:Q9C690
EnsemblPlants:AT1G51140.1 GeneID:841537 KEGG:ath:AT1G51140
TAIR:At1g51140 eggNOG:NOG312535 HOGENOM:HOG000242890
InParanoid:Q9C690 OMA:TKDEDSA PhylomeDB:Q9C690
ProtClustDB:CLSN2917227 Genevestigator:Q9C690 Uniprot:Q9C690
Length = 379
Score = 162 (62.1 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 34/64 (53%), Positives = 44/64 (68%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
+RAKRG AT S+AERVRR KI+ER+R LQDLVP A MLD+ + Y++ LQ Q
Sbjct: 304 IRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQ 363
Query: 185 IEFL 188
++ L
Sbjct: 364 VKAL 367
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 144 (55.7 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 28/63 (44%), Positives = 47/63 (74%)
Query: 128 KRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEF 187
+R ++ + H+ +ER RR++INE+L+ LQ+L+P C KT ++ MLD I+Y++SLQ Q++
Sbjct: 10 RRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVS-MLDEAIDYLKSLQLQLQM 68
Query: 188 LSM 190
L M
Sbjct: 69 LVM 71
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 158 (60.7 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 128 KRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI-E 186
KR +A + H+LAER RREKINER++ LQ L+P C K+ ++ ML+ +I YV+SL+ QI +
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVS-MLEDVIEYVKSLEMQINQ 205
Query: 187 FL---SMKLSAASMYYDFNSE 204
F+ +M ++ Y F S+
Sbjct: 206 FMPHMAMGMNQPPAYIPFPSQ 226
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 161 (61.7 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 48/139 (34%), Positives = 76/139 (54%)
Query: 60 SHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNE-RVVEK 118
+HD G+K A VE+ + TP+SG + + +Q + K K E E+
Sbjct: 193 AHDL--GRKGKAVAVEA----AGTPSSG--VCKAETEPVQIQPATESKLKAREETHGTEE 244
Query: 119 PKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYV 178
+ KR + + H+LAER RREKINE+++ LQ L+P C K+ ++ LD I YV
Sbjct: 245 ARG--STSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKVST-LDDAIEYV 301
Query: 179 RSLQNQIE-FLSMKLSAAS 196
+SLQ+QI+ +S ++A +
Sbjct: 302 KSLQSQIQGMMSPMMNAGN 320
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 162 (62.1 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 34/73 (46%), Positives = 52/73 (71%)
Query: 127 AKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 186
+KR ++ + H+L+ER RR++INE++R LQ+L+P C K + A MLD I Y++SLQ Q++
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKSLQLQVQ 397
Query: 187 FLSMKLSAASMYY 199
+SM AS YY
Sbjct: 398 IMSM----ASGYY 406
>UNIPROTKB|Q2QMV9 [details] [associations]
symbol:LOC_Os12g39850 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
KEGG:dosa:Os12t0589000-00 OMA:DESEMMA Uniprot:Q2QMV9
Length = 304
Score = 151 (58.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 126 RAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
RA RG ATD SL R RRE+INERL+ LQ+LVP K + ++ ML+ ++YV+ LQ QI
Sbjct: 217 RAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTK-VDISTMLEEAVHYVKFLQLQI 275
Query: 186 EFLS---MKLSAASMYYDFNSELD 206
+ LS M + A Y N LD
Sbjct: 276 KLLSSDEMWMYAPIAYNGMNIGLD 299
Score = 39 (18.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 23/124 (18%), Positives = 46/124 (37%)
Query: 2 ALENRNTSD-DQPAGVMGFFSNGSFFDHHQQPQLCMSFADNNIQSEAL--VVPSIGLIAD 58
A N N S P+ G+ F D ++ + S A +++ + + +I +
Sbjct: 66 AYSNSNASSIPAPSEYEGY----CFSDSNEALGVSSSIAPHDLSMVQVQGATEFLNVIPN 121
Query: 59 FSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEK 118
S D+ + ++S + S G +G+ + KR + ++ VEK
Sbjct: 122 HSLDSFGNGELGHEDLDSVSGTNKRKQSAEGEFDGQTRGSKCARKAEPKRAKKAKQTVEK 181
Query: 119 PKEV 122
V
Sbjct: 182 DASV 185
>UNIPROTKB|Q6K8Y4 [details] [associations]
symbol:OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000239571 EMBL:AP003975 EMBL:AP004094
EnsemblPlants:LOC_Os02g55250.1 OMA:GQDDFFD Uniprot:Q6K8Y4
Length = 463
Score = 124 (48.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 142 VRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSM-KLSAAS 196
+RRE+I ER++ LQ+LVP KT A MLD II+YV+ LQ Q++ LSM +L AS
Sbjct: 251 LRRERIAERMKALQELVPNANKT-DKASMLDEIIDYVKFLQLQVKVLSMSRLGGAS 305
Score = 80 (33.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 82 PTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAER 141
P + G G + G G + + P++ RA+RGQATD HS+AER
Sbjct: 171 PAQSFGGGAAASGGGGGGSASAAAAAGASSGGGAAAPPRQ--RQRARRGQATDPHSIAER 228
Query: 142 V 142
V
Sbjct: 229 V 229
>TAIR|locus:2059979 [details] [associations]
symbol:FBH4 "AT2G42280" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0046685
"response to arsenic-containing substance" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC002561 GO:GO:0048573
Gene3D:4.10.280.10 SUPFAM:SSF47459 eggNOG:NOG312535
HOGENOM:HOG000242890 EMBL:BT015339 EMBL:BT015712 EMBL:AK228981
IPI:IPI00530686 IPI:IPI00538142 PIR:T00937 RefSeq:NP_181757.2
RefSeq:NP_973670.1 UniGene:At.12448 UniGene:At.43726
ProteinModelPortal:Q66GR3 SMR:Q66GR3 PRIDE:Q66GR3
EnsemblPlants:AT2G42280.1 GeneID:818829 KEGG:ath:AT2G42280
TAIR:At2g42280 InParanoid:Q66GR3 OMA:NDNRANC PhylomeDB:Q66GR3
ProtClustDB:CLSN2681218 Genevestigator:Q66GR3 Uniprot:Q66GR3
Length = 359
Score = 158 (60.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
+RAKRG AT S+AERVRR +I+ER+R LQ+LVP K + MLD+ ++Y++ LQ Q
Sbjct: 279 IRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQ 338
Query: 185 IEFLS 189
+ L+
Sbjct: 339 YKILN 343
>TAIR|locus:2041369 [details] [associations]
symbol:PIL1 "phytochrome interacting factor 3-like 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009641 "shade
avoidance" evidence=IEP] [GO:0010017 "red or far-red light
signaling pathway" evidence=IEP;IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 EMBL:AC004411 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0010017 GO:GO:0009641 HOGENOM:HOG000115543
ProtClustDB:CLSN2680935 EMBL:AB090873 EMBL:AY219127 EMBL:AY954840
IPI:IPI00545843 PIR:T02190 RefSeq:NP_182220.2 UniGene:At.36425
ProteinModelPortal:Q8L5W8 SMR:Q8L5W8 IntAct:Q8L5W8 STRING:Q8L5W8
PRIDE:Q8L5W8 EnsemblPlants:AT2G46970.1 GeneID:819311
KEGG:ath:AT2G46970 TAIR:At2g46970 eggNOG:NOG291407
InParanoid:Q8L5W8 OMA:MELVCEN PhylomeDB:Q8L5W8
Genevestigator:Q8L5W8 Uniprot:Q8L5W8
Length = 416
Score = 158 (60.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 34/85 (40%), Positives = 53/85 (62%)
Query: 111 NNERVVEKPKEVIHVRA-----KRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTM 165
N++ + K +H R KR ++T+ H L ER RR++ N+++R LQDL+P CYK
Sbjct: 204 NSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYKD- 262
Query: 166 GMAVMLDVIINYVRSLQNQIEFLSM 190
A +LD I Y+R+LQ Q++ +SM
Sbjct: 263 DKASLLDEAIKYMRTLQLQVQMMSM 287
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 155 (59.6 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/75 (42%), Positives = 48/75 (64%)
Query: 117 EKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIIN 176
E+P R KR +A + H+L+E+ RR +INE+++ LQ L+P KT A MLD I
Sbjct: 18 EQPTRPARPRGKRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSSKT-DKASMLDDAIE 76
Query: 177 YVRSLQNQIEFLSMK 191
Y++ LQ Q++ LSM+
Sbjct: 77 YLKQLQLQVQMLSMR 91
>UNIPROTKB|Q7XT55 [details] [associations]
symbol:OSJNBa0084K20.3 "OSJNBa0076N16.1 protein"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000141 EMBL:AL606613 EMBL:AL731617 Uniprot:Q7XT55
Length = 218
Score = 145 (56.1 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
VRAKRG AT S+AER RR +I+E+LR LQ LVP K + MLD+ +++++ LQ+Q
Sbjct: 134 VRAKRGCATHPRSIAERERRTRISEKLRKLQALVPNMDKQTSTSDMLDLAVDHIKGLQSQ 193
Query: 185 IEFL 188
++ L
Sbjct: 194 LQTL 197
>TAIR|locus:2118934 [details] [associations]
symbol:RSL2 "AT4G33880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0048766 "root hair initiation"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009733 GO:GO:0003677 GO:GO:0016049 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL031032
EMBL:AL161584 HOGENOM:HOG000240244 GO:GO:0048766 EMBL:AF488616
EMBL:BT003137 EMBL:AK228110 IPI:IPI00526320 PIR:T05216
RefSeq:NP_195114.2 UniGene:At.31542 ProteinModelPortal:Q84WK0
SMR:Q84WK0 EnsemblPlants:AT4G33880.1 GeneID:829531
KEGG:ath:AT4G33880 TAIR:At4g33880 eggNOG:NOG318365
InParanoid:Q84WK0 OMA:TINTNSY PhylomeDB:Q84WK0
ProtClustDB:CLSN2680247 Genevestigator:Q84WK0 Uniprot:Q84WK0
Length = 352
Score = 151 (58.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 126 RAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
RA RG ATD SL R RRE+INERLR LQ+LVP K + ++ ML+ ++YV+ LQ QI
Sbjct: 267 RASRGAATDPQSLYARKRRERINERLRILQNLVPNGTK-VDISTMLEEAVHYVKFLQLQI 325
Query: 186 EFLS 189
+ LS
Sbjct: 326 KLLS 329
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 126 RAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
RA +G ATD SL R RREKINERL+ LQ+LVP K + ++ ML+ ++YV+ LQ QI
Sbjct: 168 RATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTK-VDISTMLEEAVHYVKFLQLQI 226
Query: 186 EFLS 189
+ LS
Sbjct: 227 KLLS 230
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 153 (58.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 128 KRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEF 187
KR + + H+L+ER RR++INE++R LQ+L+P C K + A MLD I Y+++LQ Q++
Sbjct: 309 KRSRTAEVHNLSERRRRDRINEKMRALQELIPNCNK-IDKASMLDEAIEYLKTLQLQVQM 367
Query: 188 LSM 190
+SM
Sbjct: 368 MSM 370
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 148 (57.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 30/65 (46%), Positives = 45/65 (69%)
Query: 127 AKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 186
+KR +A + H+L+E+ RR KINE+++ LQ L+P KT A MLD I Y++ LQ Q++
Sbjct: 99 SKRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNSNKT-DKASMLDEAIEYLKQLQLQVQ 157
Query: 187 FLSMK 191
LSM+
Sbjct: 158 MLSMR 162
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 148 (57.2 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 49/149 (32%), Positives = 79/149 (53%)
Query: 55 LIADFSHDTSNGKKAAAHTVESFMNLSPTPASG--SGLL---SVNNKGTGMQGLSGRKRK 109
L SHD S +E +N + + +SG SG + +G + RKRK
Sbjct: 175 LDVSMSHDRSKN-------IEEKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRK 227
Query: 110 RNN--ERVVEKPKEV---IHVRA---KRGQATDSHSLAERVRREKINERLRCLQDLVPGC 161
R N + V + + R+ +R +A + H+L+ER RR++INER++ LQ+L+P C
Sbjct: 228 RINHTDESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHC 287
Query: 162 YKTMGMAVMLDVIINYVRSLQNQIEFLSM 190
KT A +LD I+Y++SLQ Q++ + M
Sbjct: 288 SKT-DKASILDEAIDYLKSLQLQLQVMWM 315
>UNIPROTKB|Q2QMM0 [details] [associations]
symbol:LOC_Os12g40710 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 Gramene:Q2QMM0 Uniprot:Q2QMM0
Length = 266
Score = 143 (55.4 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 46/141 (32%), Positives = 66/141 (46%)
Query: 60 SHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKP 119
S + + ++AA E + PA S + NK RK+K+ +K
Sbjct: 21 SPEAGDDRRAAPPAPEK-KQMDNMPAVASPTM---NKDEASDDSGERKKKK------KKA 70
Query: 120 KEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVR 179
++ A +H+L E+ RR KI ER R LQ LVPGC A LD I Y++
Sbjct: 71 SSAAGKASRHRHAAGAHNLTEKRRRFKITERFRTLQRLVPGCDNKSNQASTLDQTIQYMK 130
Query: 180 SLQNQIEFLSMKLS-AASMYY 199
SLQ+Q+E S S AA++ Y
Sbjct: 131 SLQHQLEATSAVGSPAAAVLY 151
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/63 (44%), Positives = 47/63 (74%)
Query: 128 KRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEF 187
+R +A + H+L+ER RR++INER++ LQ+L+P C +T A +LD I+Y++SLQ Q++
Sbjct: 253 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQV 311
Query: 188 LSM 190
+ M
Sbjct: 312 MWM 314
>TAIR|locus:505006103 [details] [associations]
symbol:AT1G05805 "AT1G05805" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC009999 HOGENOM:HOG000242890 EMBL:BT000954 EMBL:AY086106
IPI:IPI00516925 PIR:F86192 RefSeq:NP_563749.1 UniGene:At.11933
ProteinModelPortal:Q8H102 SMR:Q8H102 IntAct:Q8H102 STRING:Q8H102
PaxDb:Q8H102 PRIDE:Q8H102 EnsemblPlants:AT1G05805.1 GeneID:837090
KEGG:ath:AT1G05805 TAIR:At1g05805 eggNOG:NOG249421
InParanoid:Q8H102 OMA:NEVNETP PhylomeDB:Q8H102
ProtClustDB:CLSN2687697 Genevestigator:Q8H102 Uniprot:Q8H102
Length = 362
Score = 141 (54.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 113 ERVVEKPKEVI--HVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVM 170
+ ++ P++ + +RAKRG AT S+AER RR +I+ +L+ LQDLVP K + M
Sbjct: 269 DNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDM 328
Query: 171 LDVIINYVRSLQNQIEFL 188
LD+ + +++ LQ+Q++ L
Sbjct: 329 LDLAVQHIKGLQHQLQNL 346
Score = 36 (17.7 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 86 SGSGLLSVNNKGTGMQGLSGRKRKRNNERV 115
S S VNN G + L +N+ +
Sbjct: 78 SDSTTCGVNNSSDGQKQLGNNNNNNSNKDI 107
>TAIR|locus:2199307 [details] [associations]
symbol:AT1G68240 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0009686 "gibberellin biosynthetic process" evidence=RCA]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0016114 "terpenoid biosynthetic process"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC016447
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AJ577585 EMBL:AY735551
EMBL:AY735552 EMBL:AY924719 IPI:IPI00528459 IPI:IPI00657054
IPI:IPI00919318 PIR:H96705 RefSeq:NP_001031251.1 RefSeq:NP_176991.2
UniGene:At.35550 ProteinModelPortal:Q5XVH0 SMR:Q5XVH0
EnsemblPlants:AT1G68240.1 GeneID:843153 KEGG:ath:AT1G68240
TAIR:At1g68240 eggNOG:NOG270610 HOGENOM:HOG000095221 OMA:EGTHEEE
PhylomeDB:Q5XVH0 ProtClustDB:CLSN2681409 Genevestigator:Q5XVH0
Uniprot:Q5XVH0
Length = 185
Score = 130 (50.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 30/100 (30%), Positives = 59/100 (59%)
Query: 100 MQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVP 159
+Q + G + ++E+ E+P E + AKR ++ + + E+ RR++I +++ LQ L+P
Sbjct: 36 LQEIFGVTKNNDHEKHDEEPDEESYRMAKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMP 95
Query: 160 G-CYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMY 198
C K +A L+ II Y++SL+ Q++ +SM + +Y
Sbjct: 96 NHCTKP-DLASKLENIIEYIKSLKYQVDVMSMAYTTTPVY 134
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 142 (55.0 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
V KR +A H+ +ER RR+KIN+R++ LQ LVP KT A MLD +I Y++ LQ Q
Sbjct: 207 VSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKT-DKASMLDEVIEYLKQLQAQ 265
Query: 185 IEFLSMKLSAASM 197
+ +S +++ SM
Sbjct: 266 VSMMS-RMNMPSM 277
>UNIPROTKB|Q6Z9R3 [details] [associations]
symbol:P0461F06.33 "BHLH protein family-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000145
eggNOG:NOG315110 EMBL:AP004693 EnsemblPlants:LOC_Os08g36740.1
OMA:SAMREMI Uniprot:Q6Z9R3
Length = 246
Score = 136 (52.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 46/140 (32%), Positives = 68/140 (48%)
Query: 57 ADFSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVV 116
A +S+ G+ + HT + PASG G + G G + + V
Sbjct: 90 AAYSNAAGGGRGSEYHTTTT-----TRPASGGG----GDGGVGPAAMREMIFHIAALQPV 140
Query: 117 EKPKEVIHVRAKRGQ--ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVI 174
E + +R +TD S+A R+RRE+I+ER+R LQ LVPG K M A MLD
Sbjct: 141 NIDPETVRPPKRRNVRISTDPQSVAARMRRERISERIRILQRLVPGGTK-MDTASMLDEA 199
Query: 175 INYVRSLQNQIEFLSMKLSA 194
I+YV+ L+ Q++ L +A
Sbjct: 200 IHYVKFLKTQVQSLERAAAA 219
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 134 (52.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 126 RAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
+A RG A+D SL R RRE+IN+RL+ LQ LVP K + ++ ML+ ++YV+ LQ QI
Sbjct: 133 KANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTK-VDISTMLEDAVHYVKFLQLQI 191
Query: 186 EFLS 189
+ LS
Sbjct: 192 KLLS 195
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 139 (54.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 28/65 (43%), Positives = 45/65 (69%)
Query: 127 AKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 186
+KR +A + H+L+E+ RR +INE+++ LQ L+P KT A MLD I Y++ LQ Q++
Sbjct: 193 SKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKT-DKASMLDEAIEYLKQLQLQVQ 251
Query: 187 FLSMK 191
L+M+
Sbjct: 252 MLTMR 256
>UNIPROTKB|Q67TR8 [details] [associations]
symbol:B1342C04.6 "Basic helix-loop-helix (BHLH)-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 EMBL:AP005655 EMBL:AP006057
EMBL:AK060477 EMBL:AK070458 RefSeq:NP_001063357.1 UniGene:Os.51063
EnsemblPlants:LOC_Os09g28210.1 GeneID:4347252 KEGG:osa:4347252
OMA:AYPAFHA ProtClustDB:CLSN2697769 Uniprot:Q67TR8
Length = 236
Score = 134 (52.2 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 42/131 (32%), Positives = 67/131 (51%)
Query: 66 GKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHV 125
G A H ++ M+ +P S SG ++ + + + + VE E +
Sbjct: 83 GAGAGVHQLDFAMS---SPGSDSGAPQGSSSSSSSEAMREMIFHIAALQPVEIDPEAVRP 139
Query: 126 RAKRGQ--ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQN 183
+R + D S+A R+RRE+I+ER+R LQ LVPG K M A MLD I+YV+ L++
Sbjct: 140 PKRRNVRISKDPQSVAARLRRERISERIRILQRLVPGGTK-MDTASMLDEAIHYVKFLKS 198
Query: 184 QIEFLSMKLSA 194
Q++ L +A
Sbjct: 199 QVQSLERAAAA 209
>TAIR|locus:2156015 [details] [associations]
symbol:RSL1 "AT5G37800" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000006063 ProtClustDB:CLSN2681768 EMBL:AB016873
IPI:IPI00523734 RefSeq:NP_198596.1 UniGene:At.55195
ProteinModelPortal:Q9FJ00 SMR:Q9FJ00 EnsemblPlants:AT5G37800.1
GeneID:833758 KEGG:ath:AT5G37800 TAIR:At5g37800 eggNOG:NOG303056
InParanoid:Q9FJ00 OMA:MDFNASS PhylomeDB:Q9FJ00
Genevestigator:Q9FJ00 Uniprot:Q9FJ00
Length = 307
Score = 132 (51.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 86 SGSGLLSVNNKGTGMQG-LSGRKRK--RNNERVVEKPKEVIHVRAKRGQAT---DSHSLA 139
SGS ++++ ++ L+G KR N ++ +KP + + K T D SLA
Sbjct: 156 SGSTIVNIGSRHESTSPKLAGNKRPFTGENTQLSKKPSSGTNGKIKPKATTSPKDPQSLA 215
Query: 140 ERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLS 189
+ RRE+I+ERL+ LQ+LVP K + + ML+ I YV+ LQ Q++ L+
Sbjct: 216 AKNRRERISERLKVLQELVPNGTK-VDLVTMLEKAIGYVKFLQVQVKVLA 264
>UNIPROTKB|Q6AV35 [details] [associations]
symbol:OSJNBa0063J18.7 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140
EMBL:AC107206 RefSeq:NP_001050667.1 UniGene:Os.79759
EnsemblPlants:LOC_Os03g42100.1 GeneID:4333457 KEGG:osa:4333457
eggNOG:NOG300710 OMA:CTSENDS ProtClustDB:CLSN2694086 Uniprot:Q6AV35
Length = 310
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 37/86 (43%), Positives = 52/86 (60%)
Query: 126 RAKRGQ--ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQN 183
+A+ G ATD SL R RRE+INERL+ LQ+LVP K + ++ ML+ ++YV+ LQ
Sbjct: 220 KAQSGHRSATDPQSLYARKRRERINERLKILQNLVPNGTK-VDISTMLEEAMHYVKFLQL 278
Query: 184 QIEFLS---MKLSAASMYYDFNSELD 206
QI+ LS M + A Y N +D
Sbjct: 279 QIKLLSSDEMWMYAPIAYNGMNIGID 304
>TAIR|locus:2144791 [details] [associations]
symbol:HEC3 "AT5G09750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB020752
EMBL:AL353994 GO:GO:0048462 GO:GO:0010500 IPI:IPI00522404
PIR:T49923 RefSeq:NP_196537.1 UniGene:At.65500
ProteinModelPortal:Q9LXD8 SMR:Q9LXD8 IntAct:Q9LXD8 STRING:Q9LXD8
EnsemblPlants:AT5G09750.1 GeneID:830835 KEGG:ath:AT5G09750
TAIR:At5g09750 eggNOG:NOG238444 HOGENOM:HOG000210013
InParanoid:Q9LXD8 OMA:NDPIGMA ProtClustDB:CLSN2916890
Genevestigator:Q9LXD8 Uniprot:Q9LXD8
Length = 224
Score = 127 (49.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/74 (48%), Positives = 46/74 (62%)
Query: 116 VEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVII 175
V+KPK +VR + D S+A R RRE+I+ER+R LQ LVPG K M A MLD I
Sbjct: 115 VKKPKRR-NVRI----SDDPQSVAARHRRERISERIRILQRLVPGGTK-MDTASMLDEAI 168
Query: 176 NYVRSLQNQIEFLS 189
YV+ L+ QI L+
Sbjct: 169 RYVKFLKRQIRLLN 182
>TAIR|locus:2033015 [details] [associations]
symbol:MEE8 "AT1G25310" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009793 Gene3D:4.10.280.10 EMBL:AC079374
IPI:IPI00520631 RefSeq:NP_173902.1 UniGene:At.51765
ProteinModelPortal:Q9FRI0 SMR:Q9FRI0 EnsemblPlants:AT1G25310.1
GeneID:839115 KEGG:ath:AT1G25310 TAIR:At1g25310
Genevestigator:Q9FRI0 Uniprot:Q9FRI0
Length = 145
Score = 111 (44.1 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 27/99 (27%), Positives = 53/99 (53%)
Query: 84 PASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVR 143
P + S L +NN+ G++ + G+KR + R +K + K +D +L ++ R
Sbjct: 21 PEANSDLRRINNE-KGVEKV-GQKRSAESRREGKKKRVKTQCVIKSSDKSDHDTLLKKKR 78
Query: 144 REKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQ 182
RE+I +L L+++ P C ++ + +LD +I Y +L+
Sbjct: 79 RERIRRQLETLKEITPNCPQS-DINAILDCVIEYTNNLR 116
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 125 (49.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 35/107 (32%), Positives = 57/107 (53%)
Query: 84 PASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVR 143
P+ G +V++ G G+ K ++R K + + KR H+L+E+ R
Sbjct: 52 PSVSGG--AVSSVGYGVSETGQDKYAFEHKRSGAKQRNSL----KRNIDAQFHNLSEKKR 105
Query: 144 REKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSM 190
R KINE+++ LQ L+P KT A MLD I Y++ LQ Q++ L++
Sbjct: 106 RSKINEKMKALQKLIPNSNKT-DKASMLDEAIEYLKQLQLQVQTLAV 151
>TAIR|locus:2155543 [details] [associations]
symbol:HEC1 "HECATE 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010500 "transmitting tissue
development" evidence=IGI] [GO:0048462 "carpel formation"
evidence=IMP] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:AF488618 EMBL:AK228927 IPI:IPI00530790
RefSeq:NP_201507.1 UniGene:At.28829 ProteinModelPortal:Q9FHA7
SMR:Q9FHA7 IntAct:Q9FHA7 EnsemblPlants:AT5G67060.1 GeneID:836841
KEGG:ath:AT5G67060 TAIR:At5g67060 eggNOG:NOG267961
HOGENOM:HOG000242863 InParanoid:Q9FHA7 OMA:FLFNSTH PhylomeDB:Q9FHA7
ProtClustDB:CLSN2684406 Genevestigator:Q9FHA7 GO:GO:0048462
GO:GO:0010500 Uniprot:Q9FHA7
Length = 241
Score = 127 (49.8 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 44/140 (31%), Positives = 67/140 (47%)
Query: 57 ADFSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSV------NNKGTGMQGLSGRKRKR 110
+D S G + + + + ++SP A S L NN GT M + +
Sbjct: 46 SDHSMTNEPGFRYGSGLLTNPSSISPNTAYSSVFLDKRNNSNNNNNGTNMAAMREMIFRI 105
Query: 111 NNERVVEKPKEVIHVRAKRGQ--ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMA 168
+ + E + +R + D S+A R RRE+I+ER+R LQ LVPG K M A
Sbjct: 106 AVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTK-MDTA 164
Query: 169 VMLDVIINYVRSLQNQIEFL 188
MLD I+YV+ L+ Q++ L
Sbjct: 165 SMLDEAIHYVKFLKKQVQSL 184
>UNIPROTKB|Q2QMN2 [details] [associations]
symbol:LOC_Os12g40590 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 EMBL:CM000149 eggNOG:NOG272270
KEGG:dosa:Os12t0597800-01 Uniprot:Q2QMN2
Length = 265
Score = 128 (50.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 117 EKPKEVIHVRAKRGQA-TDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVII 175
E+ + V H +A+R ++H L E+ RR +INE+ + LQ LVPGC K + LD I
Sbjct: 138 EERRRVKH-KARRNPGYAETHGLTEKRRRSRINEKFKMLQRLVPGCDKC-SQSSTLDRTI 195
Query: 176 NYVRSLQNQIE 186
+Y++SLQ Q++
Sbjct: 196 HYMKSLQQQLQ 206
>UNIPROTKB|Q651K2 [details] [associations]
symbol:B1089G05.30 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CM000143 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005967 EnsemblPlants:LOC_Os06g30090.1 Uniprot:Q651K2
Length = 294
Score = 128 (50.1 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 51/172 (29%), Positives = 81/172 (47%)
Query: 21 SNGSFFDHH-QQPQLCMSFADNNIQSEALVVPSIGLIADFSHDTSNGKKAAAHTVESFMN 79
S+ FD H + +S+ D ++ + P IG G AA + S +
Sbjct: 95 SSALTFDGHGAEEHSAVSWMDMDMDAHGAAPPLIGY----------GPTAATSSPSSCFS 144
Query: 80 LSPTPASG-SGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQAT--DSH 136
+ SG SG++ V SG +R+ + E +H +K+ +A ++
Sbjct: 145 ---SGGSGDSGMVMVTTTTPRSAAASGSQRRARPPPSPLQGSE-LHEYSKKQRANNKETQ 200
Query: 137 SLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFL 188
S A + RRE+I+ERLR LQ+LVP K + M MLD I+YV+ +Q Q+ L
Sbjct: 201 SSAAKSRRERISERLRALQELVPSGGK-VDMVTMLDRAISYVKFMQMQLRVL 251
>TAIR|locus:2163163 [details] [associations]
symbol:PIF7 "AT5G61270" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0009416
"response to light stimulus" evidence=IDA] [GO:0009704
"de-etiolation" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016607
GO:GO:0003700 GO:GO:0006351 GO:GO:0003690 GO:GO:0009585
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB010073 HSSP:P22415
GO:GO:0009704 EMBL:AF488604 EMBL:BX831447 EMBL:AY568656
EMBL:AJ630484 EMBL:AK220640 IPI:IPI00537261 IPI:IPI00656604
RefSeq:NP_001032117.1 RefSeq:NP_200935.2 UniGene:At.29114
ProteinModelPortal:Q570R7 SMR:Q570R7 IntAct:Q570R7 STRING:Q570R7
EnsemblPlants:AT5G61270.1 GeneID:836248 KEGG:ath:AT5G61270
TAIR:At5g61270 eggNOG:NOG286182 HOGENOM:HOG000097081
InParanoid:Q9FLK6 OMA:HNESERR PhylomeDB:Q570R7
ProtClustDB:CLSN2681114 Genevestigator:Q570R7 Uniprot:Q570R7
Length = 366
Score = 129 (50.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 25/64 (39%), Positives = 46/64 (71%)
Query: 128 KRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEF 187
+RG+A H+ +ER RR++IN+R+R LQ L+P K +++ LD +I +++ LQ Q++F
Sbjct: 163 RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSI-LDDVIEHLKQLQAQVQF 221
Query: 188 LSMK 191
+S++
Sbjct: 222 MSLR 225
>TAIR|locus:2074865 [details] [associations]
symbol:HEC2 "AT3G50330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] [GO:0080126 "ovary
septum development" evidence=IGI] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL132976
HOGENOM:HOG000242863 ProtClustDB:CLSN2684406 GO:GO:0048462
GO:GO:0010500 EMBL:BT010607 EMBL:AK175679 EMBL:AK175912
EMBL:AK176020 IPI:IPI00532987 PIR:T45579 RefSeq:NP_190602.1
UniGene:At.35505 ProteinModelPortal:Q9SND4 SMR:Q9SND4 IntAct:Q9SND4
EnsemblPlants:AT3G50330.1 GeneID:824195 KEGG:ath:AT3G50330
TAIR:At3g50330 eggNOG:NOG315110 InParanoid:Q9SND4 OMA:NANMAAM
PhylomeDB:Q9SND4 Genevestigator:Q9SND4 GO:GO:0080126 Uniprot:Q9SND4
Length = 231
Score = 124 (48.7 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 118 KPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINY 177
KP + +VR + D S+A R RRE+I+ER+R LQ LVPG K M A MLD I+Y
Sbjct: 116 KPPKRKNVRISK----DPQSVAARHRRERISERIRILQRLVPGGTK-MDTASMLDEAIHY 170
Query: 178 VRSLQNQIEFL 188
V+ L+ Q++ L
Sbjct: 171 VKFLKKQVQSL 181
>TAIR|locus:2089418 [details] [associations]
symbol:AT3G21330 "AT3G21330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP001305 EMBL:AF488617 EMBL:BT004279 EMBL:BT020364
IPI:IPI00541948 RefSeq:NP_188770.1 UniGene:At.38078
ProteinModelPortal:Q8S3D2 SMR:Q8S3D2 EnsemblPlants:AT3G21330.1
GeneID:821687 KEGG:ath:AT3G21330 TAIR:At3g21330 eggNOG:NOG330001
HOGENOM:HOG000095219 InParanoid:Q9LIG3 OMA:LMARELC PhylomeDB:Q8S3D2
ProtClustDB:CLSN2685101 Genevestigator:Q8S3D2 Uniprot:Q8S3D2
Length = 373
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/74 (44%), Positives = 48/74 (64%)
Query: 115 VVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVI 174
+VEKPK +V+ +TD ++A R RRE+I+E++R LQ LVPG K M A MLD
Sbjct: 264 IVEKPKRK-NVKI----STDPQTVAARQRRERISEKIRVLQTLVPGGTK-MDTASMLDEA 317
Query: 175 INYVRSLQNQIEFL 188
NY++ L+ Q++ L
Sbjct: 318 ANYLKFLRAQVKAL 331
>UNIPROTKB|Q2R0R9 [details] [associations]
symbol:LOC_Os11g41640 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240244 KEGG:dosa:Os11t0634700-00 Gramene:Q2R0R9
OMA:SLYAKRR Uniprot:Q2R0R9
Length = 246
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 120 KEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVR 179
K+ + R + + D+ SL + RRE+INERLR LQ LVP K + ++ ML+ + YV+
Sbjct: 150 KQSDNSRGHKQCSKDTQSLYAKRRRERINERLRILQQLVPNGTK-VDISTMLEEAVQYVK 208
Query: 180 SLQNQIEFLSMK---LSAASMYYDFNSELDTT 208
LQ QI+ LS + A Y N +L T
Sbjct: 209 FLQLQIKLLSSDDTWMFAPLAYNGMNMDLGHT 240
>UNIPROTKB|Q2QML8 [details] [associations]
symbol:LOC_Os12g40730 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 KEGG:dosa:Os12t0599400-00
KEGG:dosa:Os12t0599550-00 Gramene:Q2QML8 HOGENOM:HOG000244163
Uniprot:Q2QML8
Length = 387
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 41/123 (33%), Positives = 60/123 (48%)
Query: 84 PASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIH--VRA-----KRGQATDSH 136
PA+ S ++N T SG ++K+ K K+ R+ K G + D
Sbjct: 162 PAAASPTTTMNKDETSDD--SGERKKKKASSAAGKSKQASPRGCRSSQPYRKSGDSIDEL 219
Query: 137 SLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS 196
RR KI ER R LQ LVPGC K+ A LD I Y++SLQ+Q++ +S+ S +
Sbjct: 220 FTKFHRRRFKITERFRTLQRLVPGCDKS-NQASTLDQTIQYMKSLQHQLKAMSVVGSPPA 278
Query: 197 MYY 199
+ Y
Sbjct: 279 LLY 281
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 128 (50.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 64/240 (26%), Positives = 99/240 (41%)
Query: 6 RNTSDDQPAGVMGFFSN-GSFFDHHQQPQLCMSFAD--NNIQSEALVVPSIGLIADFSHD 62
RN S PA + GS F H P L + D +N Q ++ S + +
Sbjct: 392 RNPSPAPPAATASLTTAPGSLFSQHT-PTLTAAANDAKSNNQKRSMEATSR------ASN 444
Query: 63 TSNGKKAAAHTVESFMNLSPT--PASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPK 120
T+N A A+ + +PT P++G+G + + + L R+ + RVV P
Sbjct: 445 TNNHPAATANEGMLSFSSAPTTRPSTGTGAPAKSE--SDHSDLEASVREVESSRVVAPPP 502
Query: 121 EVIHVRAKRGQATDS-------HSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDV 173
E KRG+ + H AER RREK+N+R L+ +VP K M A +L
Sbjct: 503 EAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSK-MDKASLLGD 561
Query: 174 IINYVRSLQNQIEFLSM-KLSAASMYYDFNSELDTTETMP------GTNECDAQDMERMV 226
I+Y+ L+ ++ L K + S E D P G C A ++E +
Sbjct: 562 AISYINELRGKLTALETDKETLQSQMESLKKERDARPPAPSGGGGDGGARCHAVEIEAKI 621
>UNIPROTKB|Q657D1 [details] [associations]
symbol:P0697C12.40 "BHLH transcription-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003141
EMBL:AP003296 Uniprot:Q657D1
Length = 484
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFL 188
++D ++A R RRE+I+ERLR LQ LVPG K M A MLD NY+R L++QI L
Sbjct: 371 SSDPQTVAARQRRERISERLRVLQKLVPGGAK-MDTASMLDEAANYLRFLKSQIREL 426
>UNIPROTKB|Q2QQ32 [details] [associations]
symbol:LOC_Os12g32400 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
eggNOG:NOG284967 Uniprot:Q2QQ32
Length = 198
Score = 116 (45.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 36/95 (37%), Positives = 50/95 (52%)
Query: 105 GRKRK----RNNERVVEKPKEV-----IHVRAKRG-QATDSHSLAERVRREKINERLRCL 154
G KRK NE + + KEV + K A S S + RR++INERLR L
Sbjct: 78 GNKRKVQMDTENELMTNRSKEVRTKMSVSKACKHSVSAESSQSYYAKNRRQRINERLRIL 137
Query: 155 QDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLS 189
Q+L+P K + ++ ML+ I YV+ L QI+ LS
Sbjct: 138 QELIPNGTK-VDISTMLEEAIQYVKFLHLQIKLLS 171
>UNIPROTKB|Q69TX2 [details] [associations]
symbol:P0021C04.13 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP004687
ProteinModelPortal:Q69TX2 EnsemblPlants:LOC_Os06g10820.1
Gramene:Q69TX2 HOGENOM:HOG000241748 Uniprot:Q69TX2
Length = 211
Score = 117 (46.2 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 41/156 (26%), Positives = 73/156 (46%)
Query: 44 QSEALVVP-SIGLIADFSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQG 102
QS A VP GL+ TS + A + + + +S G++ + QG
Sbjct: 43 QSPAAHVPVPPGLLNTTMVSTSRAQAAPSAPLHPVAATAAVQSSSRGIMYTTTR----QG 98
Query: 103 LSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCY 162
+ + E +P+ R +++ S+A R+RRE++++R+R LQ LVPG
Sbjct: 99 VIDAAEEE--EAAAPRPR-----RRNARVSSEPQSVAARLRRERVSQRMRALQRLVPGGA 151
Query: 163 KTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMY 198
+ + A ML+ I YV+ L+ ++ L +A M+
Sbjct: 152 R-LDTASMLEEAIRYVKFLKGHVQSLERAAAALHMH 186
>UNIPROTKB|Q5TKP7 [details] [associations]
symbol:OJ1362_G11.11 "Putative uncharacterized protein
OJ1362_G11.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC104713 ProteinModelPortal:Q5TKP7
EnsemblPlants:LOC_Os05g46370.1 KEGG:dosa:Os05t0541400-00
Gramene:Q5TKP7 HOGENOM:HOG000238211 Uniprot:Q5TKP7
Length = 416
Score = 123 (48.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFL 188
++D ++A R+RRE+++ERLR LQ LVPG K M A MLD +Y++ L++Q+E L
Sbjct: 304 SSDPQTVAARLRRERVSERLRVLQRLVPGGSK-MDTATMLDEAASYLKFLKSQLEAL 359
>UNIPROTKB|Q9ASJ3 [details] [associations]
symbol:P0439B06.24 "Putative uncharacterized protein
P0439B06.24" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP002882 UniGene:Os.30617
ProteinModelPortal:Q9ASJ3 Gramene:Q9ASJ3 OMA:KAITYVK
ProtClustDB:CLSN2918925 Uniprot:Q9ASJ3
Length = 294
Score = 120 (47.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 137 SLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLS 189
S A +VRRE+I+ERL+ LQDLVP K + + ML+ INYV+ LQ Q++ L+
Sbjct: 210 SAAAKVRRERISERLKVLQDLVPNGTK-VDLVTMLEKAINYVKFLQLQVKVLA 261
>TAIR|locus:2028957 [details] [associations]
symbol:RHD6 "AT1G66470" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0048766 "root
hair initiation" evidence=IMP] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0048766 EMBL:AC074025
EMBL:AY128310 EMBL:BT006320 EMBL:AF488615 IPI:IPI00529158
PIR:C96690 RefSeq:NP_176820.1 UniGene:At.35765
ProteinModelPortal:Q9C707 SMR:Q9C707 IntAct:Q9C707
EnsemblPlants:AT1G66470.1 GeneID:842965 KEGG:ath:AT1G66470
TAIR:At1g66470 eggNOG:NOG301765 HOGENOM:HOG000006063
InParanoid:Q9C707 OMA:HESFPPP PhylomeDB:Q9C707
ProtClustDB:CLSN2681768 Genevestigator:Q9C707 Uniprot:Q9C707
Length = 298
Score = 120 (47.3 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 60/201 (29%), Positives = 92/201 (45%)
Query: 8 TSDDQPAGVMGFFSNGS-F--FDHHQQ---PQL-C--------MSFADNNIQSEALV--- 49
+ +D +M F NGS F FDHH+ P + C SF + N S
Sbjct: 68 SGEDHHNSLMDF--NGSSFLNFDHHESFPPPAISCGGSSGGGGFSFLEGNNMSYGFTNWN 125
Query: 50 -VPSIGLIADFSHDTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKR 108
+ +I+ S +T G+K ++ + + S S S NK + G S +
Sbjct: 126 HQHHMDIISPRSTETPQGQKDWLYSDSTVVTTGSRNESLSPK-SAGNKRSHT-GESTQPS 183
Query: 109 KRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMA 168
K+ + V K K K D SLA + RRE+I+ERL+ LQ+LVP K + +
Sbjct: 184 KKLSSGVTGKTKPKPTTSPK-----DPQSLAAKNRRERISERLKILQELVPNGTK-VDLV 237
Query: 169 VMLDVIINYVRSLQNQIEFLS 189
ML+ I+YV+ LQ Q++ L+
Sbjct: 238 TMLEKAISYVKFLQVQVKVLA 258
>TAIR|locus:2134583 [details] [associations]
symbol:AT4G00870 "AT4G00870" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AL161472 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF013294 EMBL:AJ519812 IPI:IPI00537799 PIR:T01559
RefSeq:NP_567195.1 UniGene:At.34506 ProteinModelPortal:O23090
SMR:O23090 EnsemblPlants:AT4G00870.1 GeneID:827990
KEGG:ath:AT4G00870 TAIR:At4g00870 eggNOG:NOG285642
InParanoid:O23090 OMA:SIECELM PhylomeDB:O23090
ProtClustDB:CLSN2917469 Genevestigator:O23090 Uniprot:O23090
Length = 423
Score = 121 (47.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 46/151 (30%), Positives = 71/151 (47%)
Query: 68 KAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNE--RVVEKPKEVIHV 125
K HT ++ P PA +S ++K Q S RKR+R E RV KE H
Sbjct: 193 KTTKHTNQT--GSYPKPA-----VSDHSKSGNQQFGSERKRRRKLETTRVAAATKEKHH- 244
Query: 126 RAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
A SH AE+ RREK+N R L+ +VP + M A +L ++Y+ SL+++I
Sbjct: 245 -----PAVLSHVEAEKQRREKLNHRFYALRAIVPKVSR-MDKASLLSDAVSYIESLKSKI 298
Query: 186 EFLSMKLSAASMYYDFNSELDTTETMPGTNE 216
+ L ++ M + ++ T P + E
Sbjct: 299 DDLETEIKKMKMTETDKLDNSSSNTSPSSVE 329
>UNIPROTKB|Q6ZFY4 [details] [associations]
symbol:OJ1311_H06.19 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003983
EMBL:AP004161 Uniprot:Q6ZFY4
Length = 298
Score = 118 (46.6 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 126 RAKRGQAT---DSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQ 182
+AK T D SLA + RRE+I+ERLR LQ+LVP K + + ML+ I+YV+ LQ
Sbjct: 195 KAKSAPTTPTKDPQSLAAKNRRERISERLRILQELVPNGTK-VDLVTMLEKAISYVKFLQ 253
Query: 183 NQIEFLS 189
Q++ L+
Sbjct: 254 LQVKVLA 260
>UNIPROTKB|Q8W5G3 [details] [associations]
symbol:OSJNBa0002J24.23 "Helix-loop-helix DNA-binding
domain containing protein, expressed" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:CM000140 HOGENOM:HOG000240244 EMBL:AC090713
EnsemblPlants:LOC_Os03g55550.1 eggNOG:NOG237829 OMA:WIWERRR
Uniprot:Q8W5G3
Length = 310
Score = 118 (46.6 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 125 VRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184
V A+R AT + SL R RRE+IN RLR LQ LVP K + ++ ML+ ++YV+ LQ Q
Sbjct: 210 VPARRRSATIAQSLYARRRRERINGRLRILQKLVPNGTK-VDISTMLEEAVHYVKFLQLQ 268
Query: 185 IE 186
I+
Sbjct: 269 IK 270
>UNIPROTKB|Q8S0N2 [details] [associations]
symbol:P0692C11.41-1 "BHLH transcription factor-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008207
EMBL:CM000138 EMBL:AP003381 EMBL:AP003273 EMBL:AK106119
RefSeq:NP_001044022.1 UniGene:Os.25546 GeneID:4327679
KEGG:osa:4327679 eggNOG:NOG254276 OMA:EPDMEAM
ProtClustDB:CLSN2919059 Uniprot:Q8S0N2
Length = 393
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 113 ERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLD 172
E +KP+ +VR ++D ++A R+RRE++++RLR LQ LVPG K M A MLD
Sbjct: 268 EAAADKPRRK-NVRI----SSDPQTVAARLRRERVSDRLRVLQKLVPGGNK-MDTASMLD 321
Query: 173 VIINYVRSLQNQIEFL 188
+Y++ L++Q++ L
Sbjct: 322 EAASYLKFLKSQVQKL 337
>TAIR|locus:504954829 [details] [associations]
symbol:GL3 "AT5G41315" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0010091 "trichome branching" evidence=IMP]
[GO:0001708 "cell fate specification" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0009957 "epidermal cell fate
specification" evidence=IMP] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR025610 Pfam:PF14215
GO:GO:0010091 HSSP:P61244 EMBL:AB006707 eggNOG:NOG320411
HOGENOM:HOG000237985 ProtClustDB:CLSN2682588 GO:GO:0009957
EMBL:AF246291 IPI:IPI00543830 RefSeq:NP_680372.1 UniGene:At.27204
ProteinModelPortal:Q9FN69 SMR:Q9FN69 IntAct:Q9FN69 STRING:Q9FN69
EnsemblPlants:AT5G41315.1 GeneID:834133 KEGG:ath:AT5G41315
TAIR:At5g41315 InParanoid:Q9FN69 OMA:ERTSANC PhylomeDB:Q9FN69
Genevestigator:Q9FN69 Uniprot:Q9FN69
Length = 637
Score = 118 (46.6 bits), Expect = 0.00027, P = 0.00027
Identities = 41/144 (28%), Positives = 69/144 (47%)
Query: 76 SFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDS 135
SF + +S SG +V GM +K + RV +K K ++ R + T +
Sbjct: 387 SFTRWKKSSSSSSGTATVTAPSQGML----KKIIFDVPRVHQKEKLMLDSPEARDE-TGN 441
Query: 136 HSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195
H++ E+ RREK+NER L+ ++P K +++ LD I Y++ L+ +++ L
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKIDKVSI-LDDTIEYLQELERRVQELE------ 494
Query: 196 SMYYDFNSELDTTETMPGTNECDA 219
S ++E T TM CDA
Sbjct: 495 SCRESTDTETRGTMTMKRKKPCDA 518
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 112 (44.5 bits), Expect = 0.00045, P = 0.00045
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 112 NERVVEKPKEVIHVRAKRG-QATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVM 170
+++V K K+ ++ +R H LAER RR+K+NERL L L+PG KT A +
Sbjct: 108 DQKVGSKRKDCVNNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKT-DKATV 166
Query: 171 LDVIINYVRSLQNQIEFL 188
L+ I +++ LQ +++ L
Sbjct: 167 LEDAIKHLKQLQERVKKL 184
>TAIR|locus:2093746 [details] [associations]
symbol:FMA "AT3G24140" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0010052
"guard cell differentiation" evidence=IMP] [GO:0045597 "positive
regulation of cell differentiation" evidence=IMP] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0051782 "negative regulation of cell
division" evidence=IMP] [GO:0000165 "MAPK cascade" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010103 "stomatal complex
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0045893
GO:GO:0003677 GO:GO:0045597 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238962
GO:GO:0051782 EMBL:AB028621 GO:GO:0010052 EMBL:AK221324
EMBL:BT028961 EMBL:AF488624 IPI:IPI00523995 RefSeq:NP_189056.2
UniGene:At.37586 ProteinModelPortal:Q56YJ8 SMR:Q56YJ8 IntAct:Q56YJ8
STRING:Q56YJ8 PRIDE:Q56YJ8 EnsemblPlants:AT3G24140.1 GeneID:822000
KEGG:ath:AT3G24140 TAIR:At3g24140 eggNOG:NOG326823
InParanoid:Q56YJ8 OMA:KRRRLYG PhylomeDB:Q56YJ8
ProtClustDB:CLSN2680105 Genevestigator:Q56YJ8 Uniprot:Q56YJ8
Length = 414
Score = 113 (44.8 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 32/125 (25%), Positives = 61/125 (48%)
Query: 94 NNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATD-------SHSLAERVRREK 146
+N ++ + G + R N+ V +K + RA+ + ++ +H ER RR++
Sbjct: 150 DNNSVQLRFIGGEEEDRENKNVTKKEVKSKRKRARTSKTSEEVESQRMTHIAVERNRRKQ 209
Query: 147 INERLRCLQDLVPGCYKTMG-MAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSEL 205
+NE LR L+ L+PG Y G A ++ I +VR L+ ++ L + + + ++
Sbjct: 210 MNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQ-KRRRILGETGRDM 268
Query: 206 DTTET 210
TT T
Sbjct: 269 TTTTT 273
Score = 37 (18.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 1 MALENRNTSDDQPAGV--MGFFS----NGSFFDHHQQPQLCMS 37
+AL DDQ G+ + F N DH+Q L S
Sbjct: 78 LALNQTRNQDDQETGIDPVYFLKFPVLNDKIEDHNQTQHLMPS 120
>TAIR|locus:2090679 [details] [associations]
symbol:AT3G19500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB025624 EMBL:AY084520 EMBL:AF488631 IPI:IPI00518921
RefSeq:NP_566639.1 UniGene:At.38400 ProteinModelPortal:Q9LT67
SMR:Q9LT67 EnsemblPlants:AT3G19500.1 GeneID:821484
KEGG:ath:AT3G19500 TAIR:At3g19500 eggNOG:NOG294378
HOGENOM:HOG000240890 OMA:HVENSNG PhylomeDB:Q9LT67
ProtClustDB:CLSN2688564 Genevestigator:Q9LT67 Uniprot:Q9LT67
Length = 270
Score = 93 (37.8 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 126 RAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
+ KR Q S +A +VR+E++ ER+ LQ LV KT +V+ + + Y++ LQ+QI
Sbjct: 140 KGKRNQEKSSVGIA-KVRKERLGERIAALQQLVSPYGKTDAASVLHEAM-GYIKFLQDQI 197
Query: 186 EFL 188
+ L
Sbjct: 198 QVL 200
Score = 54 (24.1 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 30/119 (25%), Positives = 44/119 (36%)
Query: 7 NTSDDQPAGVMGFFSNGS----FFDHHQQPQLCMSFADNNIQSEALVVPSIGL--IADFS 60
++SD QP G +G S F LC S N + PS+ ++D
Sbjct: 35 SSSDHQPEGNVGDGGEDSLGFVFSGKTGSRMLCFSGGYQNDDESLFLEPSVPTSGVSDLD 94
Query: 61 H-----DTSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNKGTGMQGLSGRKRKRNNER 114
D N A TV+ S +G+G N + + G+K KRN E+
Sbjct: 95 PSCIKIDCRNSNDAC--TVDKSTKSSTKKRTGTG----NGQESDQNRKPGKKGKRNQEK 147
>TAIR|locus:2098008 [details] [associations]
symbol:PIL2 "phytochrome interacting factor 3-like 2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010017 "red or far-red light signaling
pathway" evidence=IEP] [GO:0010089 "xylem development"
evidence=RCA] [GO:0044036 "cell wall macromolecule metabolic
process" evidence=RCA] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 GO:GO:0010017
EMBL:AL138651 EMBL:AB090874 EMBL:BT033108 IPI:IPI00525935
IPI:IPI00846835 PIR:T48001 RefSeq:NP_001078329.1 RefSeq:NP_191768.2
UniGene:At.1005 UniGene:At.50304 ProteinModelPortal:Q8L5W7
SMR:Q8L5W7 IntAct:Q8L5W7 STRING:Q8L5W7 EnsemblPlants:AT3G62090.2
GeneID:825382 KEGG:ath:AT3G62090 TAIR:At3g62090 eggNOG:NOG305930
HOGENOM:HOG000115543 InParanoid:Q8L5W7 OMA:ETNMLES PhylomeDB:Q8L5W7
ProtClustDB:CLSN2680935 Genevestigator:Q8L5W7 Uniprot:Q8L5W7
Length = 363
Score = 111 (44.1 bits), Expect = 0.00074, P = 0.00074
Identities = 27/92 (29%), Positives = 50/92 (54%)
Query: 99 GMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLV 158
G LS +++ + P KR + ++++ ER +R IN+++R LQ+L+
Sbjct: 156 GSMYLSSSLDDESDDARPQVPARTRKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLL 215
Query: 159 PGCYKTMGMAVMLDVIINYVRSLQNQIEFLSM 190
P +K + MLD INY+ +LQ Q++ ++M
Sbjct: 216 PNSHKDDNES-MLDEAINYMTNLQLQVQMMTM 246
>UNIPROTKB|Q94LR3 [details] [associations]
symbol:OSJNBa0010C11.7 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC069300 RefSeq:NP_001065353.1
UniGene:Os.27587 IntAct:Q94LR3 STRING:Q94LR3 GeneID:4349351
KEGG:osa:4349351 ProtClustDB:CLSN2714538 Uniprot:Q94LR3
Length = 191
Score = 105 (42.0 bits), Expect = 0.00079, P = 0.00079
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 143 RREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLS 189
RR++IN++++ LQ LVP KT A MLD +I+Y++ LQ Q++ +S
Sbjct: 13 RRDRINQKMKTLQKLVPNSSKT-DKASMLDEVIDYLKQLQAQVQVMS 58
>UNIPROTKB|Q5MP56 [details] [associations]
symbol:BA1 "Uncharacterized protein" species:4577 "Zea
mays" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY683001 EMBL:AY683002
EMBL:BT062649 RefSeq:NP_001105271.1 UniGene:Zm.18382 IntAct:Q5MP56
GeneID:542186 KEGG:zma:542186 HOGENOM:HOG000238432 OMA:MLEQAIH
Uniprot:Q5MP56
Length = 219
Score = 106 (42.4 bits), Expect = 0.00095, P = 0.00095
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQI 185
+TD S+A R RR +I++R R L+ LVPG K M ML+ I+YV+ L+ QI
Sbjct: 53 STDPQSVAARERRHRISDRFRVLRSLVPGGSK-MDTVSMLEQAIHYVKFLKTQI 105
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 242 242 0.00096 113 3 11 22 0.45 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 101
No. of states in DFA: 608 (65 KB)
Total size of DFA: 189 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.46u 0.17s 24.63t Elapsed: 00:00:01
Total cpu time: 24.47u 0.17s 24.64t Elapsed: 00:00:01
Start: Sat May 11 08:18:03 2013 End: Sat May 11 08:18:04 2013
WARNINGS ISSUED: 1