Query 042908
Match_columns 242
No_of_seqs 203 out of 935
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 10:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 5.1E-14 1.1E-18 98.6 4.7 55 132-186 4-60 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 3E-13 6.4E-18 94.7 5.3 49 134-182 3-55 (55)
3 smart00353 HLH helix loop heli 99.4 9.3E-13 2E-17 90.7 6.5 50 137-186 1-52 (53)
4 KOG1318 Helix loop helix trans 99.3 3.5E-12 7.6E-17 122.2 6.0 61 127-187 228-291 (411)
5 KOG1319 bHLHZip transcription 99.0 1.5E-09 3.1E-14 95.5 6.7 64 132-195 62-131 (229)
6 KOG4304 Transcriptional repres 98.7 6.9E-09 1.5E-13 94.1 2.8 55 133-187 33-94 (250)
7 KOG2588 Predicted DNA-binding 98.6 1.2E-07 2.5E-12 98.5 8.0 66 130-195 274-339 (953)
8 KOG3561 Aryl-hydrocarbon recep 98.5 1.7E-07 3.8E-12 96.4 5.6 52 133-184 21-75 (803)
9 KOG2483 Upstream transcription 98.1 6.2E-06 1.3E-10 74.5 6.2 57 132-188 59-117 (232)
10 PLN03217 transcription factor 97.9 1.7E-05 3.8E-10 62.1 5.1 52 144-195 19-75 (93)
11 KOG0561 bHLH transcription fac 97.5 7.8E-05 1.7E-09 70.0 3.1 55 134-188 62-117 (373)
12 KOG3960 Myogenic helix-loop-he 97.3 0.00053 1.1E-08 63.1 5.8 55 137-191 123-178 (284)
13 KOG4029 Transcription factor H 97.2 0.00032 7E-09 62.1 3.7 59 134-192 111-172 (228)
14 KOG3910 Helix loop helix trans 96.5 0.0037 8E-08 62.3 4.9 65 131-195 525-592 (632)
15 KOG4447 Transcription factor T 89.5 0.2 4.4E-06 43.4 1.7 53 133-185 79-132 (173)
16 KOG3558 Hypoxia-inducible fact 87.0 0.41 8.8E-06 49.7 2.3 44 137-180 51-97 (768)
17 KOG3559 Transcriptional regula 81.0 1.6 3.4E-05 43.4 3.5 44 138-181 7-53 (598)
18 KOG3560 Aryl-hydrocarbon recep 78.8 1.6 3.4E-05 44.7 2.7 40 140-180 33-76 (712)
19 PF13334 DUF4094: Domain of un 75.2 5.2 0.00011 31.6 4.3 28 170-197 67-94 (95)
20 KOG3898 Transcription factor N 63.3 25 0.00054 32.2 6.6 47 137-183 77-125 (254)
21 KOG4395 Transcription factor A 59.3 14 0.00031 34.5 4.3 53 135-187 177-231 (285)
22 KOG3582 Mlx interactors and re 38.1 9.2 0.0002 40.3 -0.4 58 131-188 650-711 (856)
23 PLN02705 beta-amylase 37.8 98 0.0021 32.5 6.7 7 138-144 90-96 (681)
24 KOG0139 Short-chain acyl-CoA d 32.1 45 0.00096 32.8 3.1 27 170-196 288-327 (398)
25 PF14689 SPOB_a: Sensor_kinase 31.3 1.4E+02 0.0031 21.3 5.0 42 141-190 17-58 (62)
26 COG3074 Uncharacterized protei 29.8 77 0.0017 24.5 3.4 24 171-194 13-36 (79)
27 KOG3582 Mlx interactors and re 29.5 23 0.0005 37.5 0.8 61 131-194 786-850 (856)
28 TIGR00986 3a0801s05tom22 mitoc 28.5 42 0.0009 28.9 2.0 19 145-163 49-67 (145)
29 KOG4447 Transcription factor T 27.7 50 0.0011 29.0 2.4 24 139-162 29-52 (173)
30 PF06005 DUF904: Protein of un 25.2 1.1E+02 0.0024 23.0 3.6 25 171-195 13-37 (72)
31 PRK15422 septal ring assembly 23.6 1.1E+02 0.0023 24.0 3.3 25 171-195 13-37 (79)
32 PF03195 DUF260: Protein of un 20.9 2.3E+02 0.005 22.6 4.9 62 134-196 19-98 (101)
33 PF02344 Myc-LZ: Myc leucine z 20.9 1E+02 0.0022 20.2 2.2 16 141-156 14-29 (32)
34 PF00601 Flu_NS2: Influenza no 20.3 1.2E+02 0.0026 24.4 3.0 53 134-186 27-81 (94)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.47 E-value=5.1e-14 Score=98.60 Aligned_cols=55 Identities=35% Similarity=0.605 Sum_probs=49.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCC--ccCCChhhhHHHHHHHHHHHHHHHH
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGC--YKTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~--~k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
.+..|+..||+||++||+.|..|+.|||.+ ..++||++||+.||+||++|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 455799999999999999999999999999 3558999999999999999998863
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.41 E-value=3e-13 Score=94.66 Aligned_cols=49 Identities=35% Similarity=0.693 Sum_probs=45.2
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhcCCC----ccCCChhhhHHHHHHHHHHHH
Q 042908 134 DSHSLAERVRREKINERLRCLQDLVPGC----YKTMGMAVMLDVIINYVRSLQ 182 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLVP~~----~k~~dKasIL~eAI~YIK~Lq 182 (242)
..|+..||+||++||+.|..|+.|||.+ ..+++|++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 3599999999999999999999999997 345899999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.39 E-value=9.3e-13 Score=90.74 Aligned_cols=50 Identities=38% Similarity=0.604 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhcCCC--ccCCChhhhHHHHHHHHHHHHHHHH
Q 042908 137 SLAERVRREKINERLRCLQDLVPGC--YKTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 137 s~aERrRR~kIne~~~~LrsLVP~~--~k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
+..||+||++||+.|..|+.|||.+ ..+++|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999964 2347999999999999999999886
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.28 E-value=3.5e-12 Score=122.19 Aligned_cols=61 Identities=31% Similarity=0.584 Sum_probs=53.0
Q ss_pred cccCCCCCCcchHHHHHHHHHHHHHHHhhhhcCCCcc---CCChhhhHHHHHHHHHHHHHHHHH
Q 042908 127 AKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYK---TMGMAVMLDVIINYVRSLQNQIEF 187 (242)
Q Consensus 127 akr~~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k---~~dKasIL~eAI~YIK~Lq~qvq~ 187 (242)
.|.+++++.|+.+|||||++||++|.+|..|||.|.. +++|++||..+++||+.||+..+.
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999942 367999999999999999986663
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.95 E-value=1.5e-09 Score=95.51 Aligned_cols=64 Identities=28% Similarity=0.464 Sum_probs=53.7
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCCcc------CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYK------TMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k------~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
++..|..+||+||+-||.....|+.|||.|.. ++.||.||.++|+||.+|.+++..-+++++++
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44569999999999999999999999998843 25799999999999999988776666555443
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.70 E-value=6.9e-09 Score=94.12 Aligned_cols=55 Identities=33% Similarity=0.478 Sum_probs=47.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCCcc-------CCChhhhHHHHHHHHHHHHHHHHH
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGCYK-------TMGMAVMLDVIINYVRSLQNQIEF 187 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k-------~~dKasIL~eAI~YIK~Lq~qvq~ 187 (242)
+..|-+.||+||.|||+.|.+|++|||.+.+ +++||.||+-|++|++.||...+.
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 4457899999999999999999999997743 378999999999999999886544
No 7
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.59 E-value=1.2e-07 Score=98.45 Aligned_cols=66 Identities=27% Similarity=0.481 Sum_probs=59.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 130 GQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 130 ~~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
+.++.+|+++|||.|..|||+|.+|++|||+..-++.|..+|..||+||++|+...+.+....+..
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 567899999999999999999999999999998779999999999999999999888776554444
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.47 E-value=1.7e-07 Score=96.42 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=48.8
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCCc---cCCChhhhHHHHHHHHHHHHHH
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGCY---KTMGMAVMLDVIINYVRSLQNQ 184 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~~---k~~dKasIL~eAI~YIK~Lq~q 184 (242)
+.+|+.+|||||+++|..|.+|.+|||.|. -++||.+||.+||.+||.++..
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 678999999999999999999999999997 5689999999999999999885
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.09 E-value=6.2e-06 Score=74.47 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=47.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCCccCC--ChhhhHHHHHHHHHHHHHHHHHH
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYKTM--GMAVMLDVIINYVRSLQNQIEFL 188 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k~~--dKasIL~eAI~YIK~Lq~qvq~L 188 (242)
++..|+.-||+||..|.++|..|+.+||...... +.++||+.|+.||+.|+......
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 4556999999999999999999999999764432 25899999999999998754433
No 10
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.92 E-value=1.7e-05 Score=62.06 Aligned_cols=52 Identities=31% Similarity=0.464 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhcCCCcc-----CCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 144 REKINERLRCLQDLVPGCYK-----TMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 144 R~kIne~~~~LrsLVP~~~k-----~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
-+.|++.+..||+|+|.... +..-+-||+||+.||+.|+.+|..|+++|...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999996532 23567799999999999999999999998665
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.47 E-value=7.8e-05 Score=70.04 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=46.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhcCCC-ccCCChhhhHHHHHHHHHHHHHHHHHH
Q 042908 134 DSHSLAERVRREKINERLRCLQDLVPGC-YKTMGMAVMLDVIINYVRSLQNQIEFL 188 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLVP~~-~k~~dKasIL~eAI~YIK~Lq~qvq~L 188 (242)
+.-+..||||=.-||-.|..|++|+|-. +.++.||.||+.+.+||..|+.+.-+|
T Consensus 62 eIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 62 EIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 3456789999999999999999999954 334899999999999999998865444
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.26 E-value=0.00053 Score=63.06 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHHHHhhh-hcCCCccCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 042908 137 SLAERVRREKINERLRCLQD-LVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMK 191 (242)
Q Consensus 137 s~aERrRR~kIne~~~~Lrs-LVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~ 191 (242)
.+-||||=.|+||.|.+|+. -+++.+..+-|.-||..||+||..||.-++++...
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47899999999999999976 45677777899999999999999999998888654
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.19 E-value=0.00032 Score=62.13 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=50.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhcCCC---ccCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042908 134 DSHSLAERVRREKINERLRCLQDLVPGC---YKTMGMAVMLDVIINYVRSLQNQIEFLSMKL 192 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLVP~~---~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l 192 (242)
..++..||.|=..+|..|..|+.+||.. .|++.|..+|..||.||++|++-++.-+..+
T Consensus 111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 3466779999999999999999999944 5568999999999999999999888776544
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.46 E-value=0.0037 Score=62.26 Aligned_cols=65 Identities=22% Similarity=0.217 Sum_probs=51.9
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhcCCC---ccCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 131 QATDSHSLAERVRREKINERLRCLQDLVPGC---YKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 131 ~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~---~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
.++...++-||.|=.-||+.|++|-.+.--. .|.--|..||-.||.-|-.|++||.+-..--.++
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNLNPKaa 592 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNLNPKAA 592 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccCChhhh
Confidence 3556678899999999999999999986522 3334699999999999999999999865443343
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=89.54 E-value=0.2 Score=43.43 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=44.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCCc-cCCChhhhHHHHHHHHHHHHHHH
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGCY-KTMGMAVMLDVIINYVRSLQNQI 185 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~~-k~~dKasIL~eAI~YIK~Lq~qv 185 (242)
+-.|++-||+|-..+|+.|.+||.+||... .+..|.-.|.-|-.||-+|=+-+
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 345999999999999999999999999653 22578888999999999886543
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.01 E-value=0.41 Score=49.73 Aligned_cols=44 Identities=32% Similarity=0.390 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHHHHhhhhcCCC---ccCCChhhhHHHHHHHHHH
Q 042908 137 SLAERVRREKINERLRCLQDLVPGC---YKTMGMAVMLDVIINYVRS 180 (242)
Q Consensus 137 s~aERrRR~kIne~~~~LrsLVP~~---~k~~dKasIL~eAI~YIK~ 180 (242)
.-+.|.||.|=|+-|.+|..+||-- .-.+|||+|+.-||.|++-
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 3588999999999999999999933 2237999999999999873
No 17
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=81.04 E-value=1.6 Score=43.42 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCC---ccCCChhhhHHHHHHHHHHH
Q 042908 138 LAERVRREKINERLRCLQDLVPGC---YKTMGMAVMLDVIINYVRSL 181 (242)
Q Consensus 138 ~aERrRR~kIne~~~~LrsLVP~~---~k~~dKasIL~eAI~YIK~L 181 (242)
-+.|.||++=|..|.+|..|+|-. +...||++|+.-|-.|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 467999999999999999999944 23379999999999999853
No 18
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=78.81 E-value=1.6 Score=44.66 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhhhcCCC----ccCCChhhhHHHHHHHHHH
Q 042908 140 ERVRREKINERLRCLQDLVPGC----YKTMGMAVMLDVIINYVRS 180 (242)
Q Consensus 140 ERrRR~kIne~~~~LrsLVP~~----~k~~dKasIL~eAI~YIK~ 180 (242)
-+|-|+|+|-.|..|.+|+|-- .| +||.+||.-+|.|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence 3567999999999999999944 44 7999999999999863
No 19
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=75.20 E-value=5.2 Score=31.63 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 042908 170 MLDVIINYVRSLQNQIEFLSMKLSAASM 197 (242)
Q Consensus 170 IL~eAI~YIK~Lq~qvq~L~~~l~a~~~ 197 (242)
=+.++-+-|+.|.+.|..|+|+|+++..
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477777889999999999999998753
No 20
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=63.29 E-value=25 Score=32.22 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhcCCC--ccCCChhhhHHHHHHHHHHHHH
Q 042908 137 SLAERVRREKINERLRCLQDLVPGC--YKTMGMAVMLDVIINYVRSLQN 183 (242)
Q Consensus 137 s~aERrRR~kIne~~~~LrsLVP~~--~k~~dKasIL~eAI~YIK~Lq~ 183 (242)
+.-||.|=-.+|+.|..|+.+||.. +.++.|.-.|.-|=+||..|++
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 4568888888999999999999943 2336888889888888888775
No 21
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=59.33 E-value=14 Score=34.54 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHHHHHHhhhhcCCC--ccCCChhhhHHHHHHHHHHHHHHHHH
Q 042908 135 SHSLAERVRREKINERLRCLQDLVPGC--YKTMGMAVMLDVIINYVRSLQNQIEF 187 (242)
Q Consensus 135 ~Hs~aERrRR~kIne~~~~LrsLVP~~--~k~~dKasIL~eAI~YIK~Lq~qvq~ 187 (242)
.-+.-||+|=..+|..|..|+..||.. .+++.|--.|..|-.||--|-..+..
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 346779999999999999999999966 34577888999999999888765543
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=38.13 E-value=9.2 Score=40.28 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhcCCCccC----CChhhhHHHHHHHHHHHHHHHHHH
Q 042908 131 QATDSHSLAERVRREKINERLRCLQDLVPGCYKT----MGMAVMLDVIINYVRSLQNQIEFL 188 (242)
Q Consensus 131 ~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k~----~dKasIL~eAI~YIK~Lq~qvq~L 188 (242)
.....|+-+|.+||..|.-.+..|-+++.+.... |.++.-+..++.||--++.+...+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v 711 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPV 711 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhcccc
Confidence 3456799999999999999999999999866432 566777999999998887654433
No 23
>PLN02705 beta-amylase
Probab=37.80 E-value=98 Score=32.52 Aligned_cols=7 Identities=71% Similarity=0.909 Sum_probs=3.7
Q ss_pred hHHHHHH
Q 042908 138 LAERVRR 144 (242)
Q Consensus 138 ~aERrRR 144 (242)
.-||+||
T Consensus 90 ~rer~rr 96 (681)
T PLN02705 90 LRERHRR 96 (681)
T ss_pred HHHHHHH
Confidence 3455555
No 24
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=32.15 E-value=45 Score=32.80 Aligned_cols=27 Identities=33% Similarity=0.472 Sum_probs=23.1
Q ss_pred hHHHHHHHHHH-------------HHHHHHHHHHHHhhcc
Q 042908 170 MLDVIINYVRS-------------LQNQIEFLSMKLSAAS 196 (242)
Q Consensus 170 IL~eAI~YIK~-------------Lq~qvq~L~~~l~a~~ 196 (242)
-++.||+|++. ||+|+..+..+++++.
T Consensus 288 c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaR 327 (398)
T KOG0139|consen 288 CFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAAR 327 (398)
T ss_pred HHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 46899999875 9999999999988875
No 25
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.29 E-value=1.4e+02 Score=21.26 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 042908 141 RVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSM 190 (242)
Q Consensus 141 RrRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~~ 190 (242)
|.-|=-+...|..+..|+--.. .++|.+||+.+-.+++.++.
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~--------~~~a~eYi~~~~~~~~~~s~ 58 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGK--------YEEAKEYIKELSKDLQQESE 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888876322 47889999999999888843
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.83 E-value=77 Score=24.46 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 171 LDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 171 L~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
+..||+.|.-||..|++|.++...
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 578999999999999999887643
No 27
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=29.52 E-value=23 Score=37.49 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=49.3
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhcCCC----ccCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 131 QATDSHSLAERVRREKINERLRCLQDLVPGC----YKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 131 ~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~----~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
.....|.-++|++|..+-+++..|-.|.|.. .+.+.+++||. +.|+.+|+.-..+.++..+
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 3445678899999999999999999999955 34468899998 8899999888877765543
No 28
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=28.49 E-value=42 Score=28.87 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhcCCCcc
Q 042908 145 EKINERLRCLQDLVPGCYK 163 (242)
Q Consensus 145 ~kIne~~~~LrsLVP~~~k 163 (242)
+-|-+||.+|++|||....
T Consensus 49 ETl~ERi~ALkDm~Pp~~R 67 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTR 67 (145)
T ss_pred CcHHHHHHHHHhhCCHHHH
Confidence 4577889999999997643
No 29
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=27.65 E-value=50 Score=28.96 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCc
Q 042908 139 AERVRREKINERLRCLQDLVPGCY 162 (242)
Q Consensus 139 aERrRR~kIne~~~~LrsLVP~~~ 162 (242)
.||.|..++|+.+.-|+.|+|+..
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgsp 52 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSP 52 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCC
Confidence 689999999999999999999874
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.21 E-value=1.1e+02 Score=23.00 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 171 LDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 171 L~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
+..||+-|.-||.+|+.|..+..+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5789999999999999999875444
No 31
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.57 E-value=1.1e+02 Score=23.96 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 171 LDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 171 L~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
+..||+-|.-||..|.+|.++-...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998875443
No 32
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=20.95 E-value=2.3e+02 Score=22.58 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=39.9
Q ss_pred CCcchHHHHHHHH-------HHHHHHHhhhhcCCCccCCChhhhHHHH-----------HHHHHHHHHHHHHHHHHHhhc
Q 042908 134 DSHSLAERVRREK-------INERLRCLQDLVPGCYKTMGMAVMLDVI-----------INYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 134 ~~Hs~aERrRR~k-------Ine~~~~LrsLVP~~~k~~dKasIL~eA-----------I~YIK~Lq~qvq~L~~~l~a~ 195 (242)
-++-.+++-.+-. ...-++.|+.+-|.-.. .--.+|+-|| +..|..||.+++.++.+|..+
T Consensus 19 aPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~-~a~~Sl~yEA~~R~~dPv~Gc~G~i~~L~~ql~~~~~el~~~ 97 (101)
T PF03195_consen 19 APYFPADQPQRFANVHKVFGVSNISKMLQELPPEQRE-DAMRSLVYEANARARDPVYGCVGIISQLQQQLQQLQAELALV 97 (101)
T ss_pred CCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchh-hHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566544432 23445677777555433 2345666655 788999999999999998765
Q ss_pred c
Q 042908 196 S 196 (242)
Q Consensus 196 ~ 196 (242)
.
T Consensus 98 ~ 98 (101)
T PF03195_consen 98 R 98 (101)
T ss_pred H
Confidence 3
No 33
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=20.91 E-value=1e+02 Score=20.25 Aligned_cols=16 Identities=38% Similarity=0.700 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 042908 141 RVRREKINERLRCLQD 156 (242)
Q Consensus 141 RrRR~kIne~~~~Lrs 156 (242)
|+||+.+..++..|+.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999988874
No 34
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=20.32 E-value=1.2e+02 Score=24.35 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCcchHHHHH--HHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHH
Q 042908 134 DSHSLAERVR--REKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 134 ~~Hs~aERrR--R~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
+-|...+|.+ |+.+..+|...+.||-.+.-+.-...+.-+-|-+++-||--++
T Consensus 27 D~h~lq~rn~~wreqL~qkfe~IrwlI~e~r~~l~~tensf~qItfmqaLqlLlE 81 (94)
T PF00601_consen 27 DYHSLQSRNGKWREQLGQKFEEIRWLIEEHRHRLKITENSFEQITFMQALQLLLE 81 (94)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHC----TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6788888877 9999999999999998886555555666677888887776443
Done!