Query 042908
Match_columns 242
No_of_seqs 203 out of 935
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 19:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.7E-18 9.3E-23 129.8 4.3 64 132-195 6-69 (82)
2 4ati_A MITF, microphthalmia-as 99.7 2.3E-17 7.7E-22 132.6 7.4 71 122-192 17-90 (118)
3 4h10_B Circadian locomoter out 99.6 4.9E-17 1.7E-21 120.9 3.3 58 132-189 8-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.6 7.6E-17 2.6E-21 116.9 2.9 55 132-186 2-62 (63)
5 1an4_A Protein (upstream stimu 99.6 1.3E-16 4.3E-21 115.1 3.3 56 131-186 4-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.6 3.2E-16 1.1E-20 116.8 0.5 54 131-184 8-64 (73)
7 1hlo_A Protein (transcription 99.5 6.8E-15 2.3E-19 110.2 6.4 64 132-195 12-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 8.1E-15 2.8E-19 110.2 6.4 62 133-194 3-65 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 2.6E-14 8.9E-19 109.5 6.3 60 133-192 7-68 (88)
10 3u5v_A Protein MAX, transcript 99.5 3.3E-14 1.1E-18 106.6 4.4 58 132-189 5-65 (76)
11 1nlw_A MAD protein, MAX dimeri 99.4 1.2E-12 4.1E-17 98.8 7.2 61 134-194 3-65 (80)
12 4f3l_A Mclock, circadian locom 99.1 6.2E-11 2.1E-15 107.7 5.9 54 131-184 11-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.1 1.8E-11 6.2E-16 90.0 1.5 54 133-186 13-67 (68)
14 2ql2_B Neurod1, neurogenic dif 99.0 3.5E-10 1.2E-14 81.2 5.4 52 135-186 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 2E-10 6.8E-15 105.8 3.1 54 130-183 11-67 (387)
16 4ath_A MITF, microphthalmia-as 98.9 2.7E-09 9.3E-14 81.4 6.5 50 143-192 3-55 (83)
17 2lfh_A DNA-binding protein inh 98.6 1.6E-08 5.5E-13 74.6 2.5 46 138-183 20-67 (68)
18 4aya_A DNA-binding protein inh 98.1 7.8E-06 2.7E-10 63.9 6.6 48 140-187 33-82 (97)
19 2er8_A Regulatory protein Leu3 52.2 11 0.00038 25.8 3.0 22 175-196 48-69 (72)
20 3muj_A Transcription factor CO 49.1 21 0.00071 29.3 4.5 36 146-181 95-133 (138)
21 1zme_C Proline utilization tra 45.6 12 0.00041 25.4 2.3 21 176-196 44-64 (70)
22 2wt7_A Proto-oncogene protein 43.2 60 0.002 22.4 5.7 17 140-156 1-17 (63)
23 1pyi_A Protein (pyrimidine pat 39.9 53 0.0018 23.4 5.2 23 175-197 47-69 (96)
24 2ke4_A CDC42-interacting prote 33.1 92 0.0031 23.6 5.7 61 134-195 8-88 (98)
25 3coq_A Regulatory protein GAL4 32.2 26 0.0009 24.6 2.4 26 175-200 44-69 (89)
26 1hwt_C Protein (heme activator 31.7 18 0.00063 25.1 1.5 21 175-195 57-77 (81)
27 1t3u_A Conserved hypothetical 28.5 1.1E+02 0.0038 22.5 5.5 49 144-194 32-93 (104)
28 2jee_A YIIU; FTSZ, septum, coi 28.3 51 0.0017 24.6 3.4 24 171-194 15-38 (81)
29 1p3q_Q VPS9P, vacuolar protein 26.1 1E+02 0.0034 21.3 4.4 26 138-163 3-28 (54)
30 1pd3_A Nonstructural protein N 25.8 59 0.002 22.7 3.1 46 142-187 6-51 (58)
31 1gk7_A Vimentin; intermediate 25.6 95 0.0032 19.9 3.9 24 171-194 15-38 (39)
32 1m2x_A Class B carbapenemase B 24.4 27 0.00094 28.0 1.4 32 155-187 190-221 (223)
33 1dh3_A Transcription factor CR 24.1 56 0.0019 22.2 2.8 19 176-194 22-40 (55)
34 1gd2_E Transcription factor PA 24.0 54 0.0018 23.6 2.8 19 175-193 28-46 (70)
35 2wuj_A Septum site-determining 23.4 96 0.0033 21.0 3.9 28 169-196 27-54 (57)
36 2fhx_A SPM-1; metallo-beta-lac 22.3 50 0.0017 26.6 2.7 31 155-186 215-245 (246)
37 3he4_B Synzip5; heterodimeric 21.5 93 0.0032 20.5 3.3 20 170-189 4-23 (46)
38 1a7t_A Metallo-beta-lactamase; 20.4 86 0.0029 25.2 3.7 31 155-186 200-230 (232)
39 2jqq_A Conserved oligomeric go 20.3 71 0.0024 27.6 3.2 45 142-188 51-95 (204)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.72 E-value=2.7e-18 Score=129.80 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=59.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
.+.+|+++||+||++||++|.+|++|||++..++||++||.+||+||++||.+++.|+.+..+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999996668999999999999999999999999887654
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.70 E-value=2.3e-17 Score=132.64 Aligned_cols=71 Identities=30% Similarity=0.404 Sum_probs=52.2
Q ss_pred chhhhcccCCCCCCcchHHHHHHHHHHHHHHHhhhhcCCCcc---CCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042908 122 VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYK---TMGMAVMLDVIINYVRSLQNQIEFLSMKL 192 (242)
Q Consensus 122 ~~~~rakr~~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k---~~dKasIL~eAI~YIK~Lq~qvq~L~~~l 192 (242)
..+..+++.+++.+|+++||+||++||++|.+|++|||+|.+ +++|++||++||+||++||.+++.|+...
T Consensus 17 ~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 17 EARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999999999999999999999999999853 47899999999999999999999998653
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.64 E-value=4.9e-17 Score=120.94 Aligned_cols=58 Identities=22% Similarity=0.418 Sum_probs=53.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHHHH
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLS 189 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~ 189 (242)
.+.+|+++||+||++||++|.+|++|||++..++||++||+.||+||+.||.++.-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4567999999999999999999999999876568999999999999999999988764
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.63 E-value=7.6e-17 Score=116.87 Aligned_cols=55 Identities=29% Similarity=0.460 Sum_probs=48.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCCcc------CCChhhhHHHHHHHHHHHHHHHH
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGCYK------TMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k------~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
.+.+|+++||+||++||+.|.+|+.|||.+.+ +++||+||+.||+||+.||++|+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999997743 35799999999999999998764
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=1.3e-16 Score=115.14 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=50.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhcCCCcc-----CCChhhhHHHHHHHHHHHHHHHH
Q 042908 131 QATDSHSLAERVRREKINERLRCLQDLVPGCYK-----TMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 131 ~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k-----~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
..+.+|+++||+||++||+.|.+|++|||.|.. +++|++||+.||+||++||++++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 457789999999999999999999999999863 47999999999999999998753
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.56 E-value=3.2e-16 Score=116.82 Aligned_cols=54 Identities=28% Similarity=0.528 Sum_probs=48.4
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhcCCCc---cCCChhhhHHHHHHHHHHHHHH
Q 042908 131 QATDSHSLAERVRREKINERLRCLQDLVPGCY---KTMGMAVMLDVIINYVRSLQNQ 184 (242)
Q Consensus 131 ~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~---k~~dKasIL~eAI~YIK~Lq~q 184 (242)
+++.+|+++||+||++||+.|.+|+.|||.|. .++|||+||+.||+||+.|+.-
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999883 3489999999999999999753
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=6.8e-15 Score=110.21 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=57.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCCc-cCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGCY-KTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~-k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
.+..|+..||+||..||+.|..|++|||.+. .+++|++||..||+||+.|+.+++.|+.++..+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999873 348999999999999999999999999887654
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.54 E-value=8.1e-15 Score=110.23 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=54.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCC-ccCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGC-YKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~-~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
+..|+..||+||..||+.|..|+++||.+ ..+++|++||..||+||+.|+.+++.|+.++..
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999986 234899999999999999999999998876544
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=2.6e-14 Score=109.51 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=53.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCCc--cCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGCY--KTMGMAVMLDVIINYVRSLQNQIEFLSMKL 192 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~~--k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l 192 (242)
+..|+..||+||..||++|..|+.+||.+. .+++|++||..||+||++|+.+.+.|....
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999999873 348999999999999999999988876554
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.46 E-value=3.3e-14 Score=106.60 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=48.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCC---ccCCChhhhHHHHHHHHHHHHHHHHHHH
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGC---YKTMGMAVMLDVIINYVRSLQNQIEFLS 189 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~---~k~~dKasIL~eAI~YIK~Lq~qvq~L~ 189 (242)
.+..|+..||+||..||+.|..|+.+||.+ .+..+|+.||..||+||++||+++++++
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999953 3333688999999999999999999874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.36 E-value=1.2e-12 Score=98.80 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=53.8
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhcCCCc--cCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 134 DSHSLAERVRREKINERLRCLQDLVPGCY--KTMGMAVMLDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLVP~~~--k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
..|+..||+||..||++|..|+++||.+. .+++|++||..||+||+.|+.+.+.|..+...
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999653 34789999999999999999999988876543
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.10 E-value=6.2e-11 Score=107.72 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=42.5
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHH
Q 042908 131 QATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184 (242)
Q Consensus 131 ~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~q 184 (242)
..+.+|+.+||+||++||+.|.+|+.|||....++||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 456789999999999999999999999995555589999999999999999864
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.09 E-value=1.8e-11 Score=89.98 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=47.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCC-ccCCChhhhHHHHHHHHHHHHHHHH
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGC-YKTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~-~k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
+..|+..||+|+..||+.|..|+.+||.. +++++|..||..||+||.+||+.++
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 34599999999999999999999999965 3568999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.01 E-value=3.5e-10 Score=81.18 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=47.1
Q ss_pred CcchHHHHHHHHHHHHHHHhhhhcCCC--ccCCChhhhHHHHHHHHHHHHHHHH
Q 042908 135 SHSLAERVRREKINERLRCLQDLVPGC--YKTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 135 ~Hs~aERrRR~kIne~~~~LrsLVP~~--~k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
.|+.-||+|+..||+.|..|+.+||.. +++++|..||..||+||..|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999965 4568999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.96 E-value=2e-10 Score=105.75 Aligned_cols=54 Identities=28% Similarity=0.520 Sum_probs=47.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhhhhcCCC---ccCCChhhhHHHHHHHHHHHHH
Q 042908 130 GQATDSHSLAERVRREKINERLRCLQDLVPGC---YKTMGMAVMLDVIINYVRSLQN 183 (242)
Q Consensus 130 ~~~~~~Hs~aERrRR~kIne~~~~LrsLVP~~---~k~~dKasIL~eAI~YIK~Lq~ 183 (242)
..++.+|+.+||+||++||+.|.+|+.|||.+ ..++||++||..||+|||.|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 44567899999999999999999999999953 2338999999999999999984
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.89 E-value=2.7e-09 Score=81.44 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhhcCCCcc---CCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042908 143 RREKINERLRCLQDLVPGCYK---TMGMAVMLDVIINYVRSLQNQIEFLSMKL 192 (242)
Q Consensus 143 RR~kIne~~~~LrsLVP~~~k---~~dKasIL~eAI~YIK~Lq~qvq~L~~~l 192 (242)
-|..||++|.+|..|||.+.. +++|++||..||+||++||+.++.+.+..
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999998643 37999999999999999999888776543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.59 E-value=1.6e-08 Score=74.61 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCC--ccCCChhhhHHHHHHHHHHHHH
Q 042908 138 LAERVRREKINERLRCLQDLVPGC--YKTMGMAVMLDVIINYVRSLQN 183 (242)
Q Consensus 138 ~aERrRR~kIne~~~~LrsLVP~~--~k~~dKasIL~eAI~YIK~Lq~ 183 (242)
.-||+|...||+.|..|+.+||.. +++++|..+|.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 358899999999999999999966 4468999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.05 E-value=7.8e-06 Score=63.95 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhhhcCCC--ccCCChhhhHHHHHHHHHHHHHHHHH
Q 042908 140 ERVRREKINERLRCLQDLVPGC--YKTMGMAVMLDVIINYVRSLQNQIEF 187 (242)
Q Consensus 140 ERrRR~kIne~~~~LrsLVP~~--~k~~dKasIL~eAI~YIK~Lq~qvq~ 187 (242)
||.|=..||+.|..|+.+||.. .+++.|.-+|.-||+||..|+..++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888999999999999965 45689999999999999999988765
No 19
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.24 E-value=11 Score=25.85 Aligned_cols=22 Identities=9% Similarity=0.143 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 042908 175 INYVRSLQNQIEFLSMKLSAAS 196 (242)
Q Consensus 175 I~YIK~Lq~qvq~L~~~l~a~~ 196 (242)
-.||..|+.+|..|+..|..+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999987653
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=49.09 E-value=21 Score=29.25 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhhcCCC---ccCCChhhhHHHHHHHHHHH
Q 042908 146 KINERLRCLQDLVPGC---YKTMGMAVMLDVIINYVRSL 181 (242)
Q Consensus 146 kIne~~~~LrsLVP~~---~k~~dKasIL~eAI~YIK~L 181 (242)
-|...|..|+.+||.- ...+-|..||..|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5889999999999954 33467999999999998766
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=45.61 E-value=12 Score=25.39 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 042908 176 NYVRSLQNQIEFLSMKLSAAS 196 (242)
Q Consensus 176 ~YIK~Lq~qvq~L~~~l~a~~ 196 (242)
.||..|+.+++.|+..|..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 477778888888777776543
No 22
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.16 E-value=60 Score=22.39 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhhh
Q 042908 140 ERVRREKINERLRCLQD 156 (242)
Q Consensus 140 ERrRR~kIne~~~~Lrs 156 (242)
||++|.+..+++.+.+.
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 45666666666666653
No 23
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=39.89 E-value=53 Score=23.44 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 042908 175 INYVRSLQNQIEFLSMKLSAASM 197 (242)
Q Consensus 175 I~YIK~Lq~qvq~L~~~l~a~~~ 197 (242)
-.||..|+.+|+.|+..|.....
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45999999999999999987654
No 24
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.12 E-value=92 Score=23.64 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=41.3
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhc--------------------CCCccCCChhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 042908 134 DSHSLAERVRREKINERLRCLQDLV--------------------PGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLS 193 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLV--------------------P~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~ 193 (242)
.+|-.-|||| .+|..+|..|+.=| |..+....-..-|.++..-|..|+..+..++.-|+
T Consensus 8 ~s~LPpeqRk-kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQQR-KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677654 47777777666544 33333234456688888888999999988888776
Q ss_pred hc
Q 042908 194 AA 195 (242)
Q Consensus 194 a~ 195 (242)
.+
T Consensus 87 e~ 88 (98)
T 2ke4_A 87 EA 88 (98)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 25
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=32.18 E-value=26 Score=24.64 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 042908 175 INYVRSLQNQIEFLSMKLSAASMYYD 200 (242)
Q Consensus 175 I~YIK~Lq~qvq~L~~~l~a~~~~~~ 200 (242)
..||..|+.+|+.|+..|..+....+
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~ 69 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPRED 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchh
Confidence 46999999999999998877654433
No 26
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.68 E-value=18 Score=25.14 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 042908 175 INYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 175 I~YIK~Lq~qvq~L~~~l~a~ 195 (242)
-.||..|+.+|..|+..|..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999777554
No 27
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=28.49 E-value=1.1e+02 Score=22.53 Aligned_cols=49 Identities=6% Similarity=0.076 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhcCCCccCCChhhhH---HH----------HHHHHHHHHHHHHHHHHHHhh
Q 042908 144 REKINERLRCLQDLVPGCYKTMGMAVML---DV----------IINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 144 R~kIne~~~~LrsLVP~~~k~~dKasIL---~e----------AI~YIK~Lq~qvq~L~~~l~a 194 (242)
-..|++++..|+.-.|..+. ++..|| .= .-.++..|+++++.|...+..
T Consensus 32 A~~vd~~~~~i~~~~~~~~~--~r~~vmaALnladel~~~~~~~~~~~~~~~~~i~~L~~~le~ 93 (104)
T 1t3u_A 32 ARYLDGKMREIRSSGKVIGA--DRVAVMAALNITHDLLHRKERLDQESSSTRERVRELLDRVDR 93 (104)
T ss_dssp HHHHHHHHHHHHTTTCSCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999887665 343332 11 122455555566666665544
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.28 E-value=51 Score=24.62 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 171 LDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 171 L~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
++.||+-|.-||..|.+|..+..+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999887644
No 29
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.08 E-value=1e+02 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCCcc
Q 042908 138 LAERVRREKINERLRCLQDLVPGCYK 163 (242)
Q Consensus 138 ~aERrRR~kIne~~~~LrsLVP~~~k 163 (242)
.++|-+|...++-+..|+.+-|..++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57889999999999999999998643
No 30
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=25.75 E-value=59 Score=22.72 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHH
Q 042908 142 VRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEF 187 (242)
Q Consensus 142 rRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~ 187 (242)
+=|+.+..+|.+++=||-.+...+.+.----+-|.+++.||--++.
T Consensus 6 kwReqL~qKFEeIRwlIeE~Rh~Lk~TensfeQItfmqalQLllev 51 (58)
T 1pd3_A 6 KWREQLGQKFEEIRWLIEEVRHRLKITENSFEQITFMQALQLLLEV 51 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Confidence 3488999999999999987754332222234568888888764443
No 31
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=25.62 E-value=95 Score=19.88 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 171 LDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 171 L~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
|..-|+-|++|+++.+.|+.++..
T Consensus 15 lAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 15 FANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444688899999999999988753
No 32
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=24.41 E-value=27 Score=28.02 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=23.4
Q ss_pred hhhcCCCccCCChhhhHHHHHHHHHHHHHHHHH
Q 042908 155 QDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEF 187 (242)
Q Consensus 155 rsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~ 187 (242)
..++|+-.... ....|+.+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 35677776655 356899999999999988754
No 33
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.15 E-value=56 Score=22.19 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042908 176 NYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 176 ~YIK~Lq~qvq~L~~~l~a 194 (242)
.||..|+.+|..|+.+...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777765433
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.04 E-value=54 Score=23.62 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 042908 175 INYVRSLQNQIEFLSMKLS 193 (242)
Q Consensus 175 I~YIK~Lq~qvq~L~~~l~ 193 (242)
-.||+.|+.+|..|+....
T Consensus 28 ~~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777777777765443
No 35
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=23.36 E-value=96 Score=21.05 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042908 169 VMLDVIINYVRSLQNQIEFLSMKLSAAS 196 (242)
Q Consensus 169 sIL~eAI~YIK~Lq~qvq~L~~~l~a~~ 196 (242)
..|+..++-+..|..+++.|..++..+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999887654
No 36
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=22.34 E-value=50 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=24.3
Q ss_pred hhhcCCCccCCChhhhHHHHHHHHHHHHHHHH
Q 042908 155 QDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 155 rsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
..++|+-....+ ...|.++++||+.|+.+|+
T Consensus 215 ~~i~pgHg~~~~-~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 215 KIVIPGHGEWGG-PEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp SEEEESBSCCBS-THHHHHHHHHHHHHHHHHT
T ss_pred CEEECCCCCcCC-HHHHHHHHHHHHHHHHHhc
Confidence 356787776544 6789999999999998874
No 37
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.49 E-value=93 Score=20.48 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 042908 170 MLDVIINYVRSLQNQIEFLS 189 (242)
Q Consensus 170 IL~eAI~YIK~Lq~qvq~L~ 189 (242)
.+.+--+||+.|+++..+|.
T Consensus 4 tvkelknyiqeleernaelk 23 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELK 23 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHH
Confidence 35667789999998877775
No 38
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=20.42 E-value=86 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=23.8
Q ss_pred hhhcCCCccCCChhhhHHHHHHHHHHHHHHHH
Q 042908 155 QDLVPGCYKTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 155 rsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
..++|+-....+ ..+++.+++||+.|.+++.
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhc
Confidence 457787776544 5688999999999988764
No 39
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.29 E-value=71 Score=27.64 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHHH
Q 042908 142 VRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFL 188 (242)
Q Consensus 142 rRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L 188 (242)
+=|.-++.-+..|+.|+-.-- ...-.++.+||+|+|.|-.-...|
T Consensus 51 ~v~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~L 95 (204)
T 2jqq_A 51 KTQSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSL 95 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888875322 257788999999999997755443
Done!