Query 042908
Match_columns 242
No_of_seqs 203 out of 935
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 19:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042908.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042908hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1am9a_ a.38.1.1 (A:) SREBP-1a 99.6 4E-17 2.9E-21 120.6 4.2 63 133-195 7-69 (80)
2 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 99.6 6.7E-16 4.9E-20 109.5 4.7 53 133-185 3-61 (63)
3 d1nlwa_ a.38.1.1 (A:) Mad prot 99.5 2.7E-15 2E-19 110.0 6.1 61 134-194 3-65 (79)
4 d1nkpb_ a.38.1.1 (B:) Max prot 99.5 3E-15 2.1E-19 110.7 5.4 62 133-194 3-65 (83)
5 d1mdya_ a.38.1.1 (A:) Myod B/H 99.5 2.1E-15 1.5E-19 108.7 4.0 53 134-186 14-67 (68)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 99.5 2E-15 1.4E-19 106.6 3.5 53 144-196 1-53 (61)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 99.5 1.5E-14 1.1E-18 107.8 6.7 61 134-194 8-70 (88)
8 d1an4a_ a.38.1.1 (A:) Usf B/HL 99.5 5E-15 3.7E-19 105.5 3.0 54 132-185 5-63 (65)
9 d1mn3a_ a.5.2.4 (A:) Vacuolar 45.1 24 0.0017 22.8 5.4 27 137-163 2-28 (54)
10 d1ql3a_ a.3.1.1 (A:) Cytochrom 38.9 12 0.00085 26.3 3.3 39 144-182 58-99 (99)
11 d1lrza1 a.2.7.4 (A:245-309) Me 31.9 8.8 0.00064 25.8 1.5 28 176-203 3-30 (65)
12 d1m2xa_ d.157.1.1 (A:) Zn meta 22.2 19 0.0014 26.6 2.0 29 155-184 190-218 (219)
13 d1ycca_ a.3.1.1 (A:) Mitochond 20.1 61 0.0045 22.5 4.4 38 144-181 66-106 (108)
No 1
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64 E-value=4e-17 Score=120.58 Aligned_cols=63 Identities=27% Similarity=0.374 Sum_probs=57.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAA 195 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~ 195 (242)
+..|+.+||+||++||+.|..|++|||++..+++|++||..||+||+.|+.+++.|.++....
T Consensus 7 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~l 69 (80)
T d1am9a_ 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999988778999999999999999999999998776543
No 2
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.57 E-value=6.7e-16 Score=109.46 Aligned_cols=53 Identities=28% Similarity=0.418 Sum_probs=47.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCC------ccCCChhhhHHHHHHHHHHHHHHH
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGC------YKTMGMAVMLDVIINYVRSLQNQI 185 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~------~k~~dKasIL~eAI~YIK~Lq~qv 185 (242)
+..|+++||+||++||+.|..|++|||++ ..+++|+.||+.||+||++||++|
T Consensus 3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v 61 (63)
T d1a0aa_ 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999954 334799999999999999999875
No 3
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=2.7e-15 Score=109.96 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=54.6
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhcCCCc--cCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 134 DSHSLAERVRREKINERLRCLQDLVPGCY--KTMGMAVMLDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLVP~~~--k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
..|+.+||+||++||+.|.+|++|||.+. .+++|++||..||+||+.|+.+++.|..+...
T Consensus 3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~ 65 (79)
T d1nlwa_ 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999763 24799999999999999999999999877644
No 4
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.53 E-value=3e-15 Score=110.70 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=55.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcCCCc-cCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 133 TDSHSLAERVRREKINERLRCLQDLVPGCY-KTMGMAVMLDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 133 ~~~Hs~aERrRR~kIne~~~~LrsLVP~~~-k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
+..|+.+||+||++||+.|..|++|||++. ++++|++||..||+||++|+.+++.|..++..
T Consensus 3 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~ 65 (83)
T d1nkpb_ 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999999999763 45899999999999999999999999876543
No 5
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.52 E-value=2.1e-15 Score=108.66 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhcCCCc-cCCChhhhHHHHHHHHHHHHHHHH
Q 042908 134 DSHSLAERVRREKINERLRCLQDLVPGCY-KTMGMAVMLDVIINYVRSLQNQIE 186 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLVP~~~-k~~dKasIL~eAI~YIK~Lq~qvq 186 (242)
..|+..||+||.+||+.|..|++|||.+. ++++|++||..||+||++||++|+
T Consensus 14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~ 67 (68)
T d1mdya_ 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999999999999999874 457999999999999999998764
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=2e-15 Score=106.60 Aligned_cols=53 Identities=28% Similarity=0.332 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhhcCCCccCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 042908 144 REKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS 196 (242)
Q Consensus 144 R~kIne~~~~LrsLVP~~~k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a~~ 196 (242)
|++||++|.+|++|||++.+++|||+||.+||+||++||.+++.|+++.....
T Consensus 1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 53 (61)
T d1uklc_ 1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLK 53 (61)
T ss_dssp CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999986789999999999999999999999998876654
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=1.5e-14 Score=107.84 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=54.8
Q ss_pred CCcchHHHHHHHHHHHHHHHhhhhcCCCc--cCCChhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 042908 134 DSHSLAERVRREKINERLRCLQDLVPGCY--KTMGMAVMLDVIINYVRSLQNQIEFLSMKLSA 194 (242)
Q Consensus 134 ~~Hs~aERrRR~kIne~~~~LrsLVP~~~--k~~dKasIL~eAI~YIK~Lq~qvq~L~~~l~a 194 (242)
..|+.+||+||++||+.|..|++|||++. .+++|++||..||+||++|+.+++.|..+...
T Consensus 8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~ 70 (88)
T d1nkpa_ 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999763 34799999999999999999999999876654
No 8
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.48 E-value=5e-15 Score=105.46 Aligned_cols=54 Identities=24% Similarity=0.385 Sum_probs=48.1
Q ss_pred CCCCcchHHHHHHHHHHHHHHHhhhhcCCCc-----cCCChhhhHHHHHHHHHHHHHHH
Q 042908 132 ATDSHSLAERVRREKINERLRCLQDLVPGCY-----KTMGMAVMLDVIINYVRSLQNQI 185 (242)
Q Consensus 132 ~~~~Hs~aERrRR~kIne~~~~LrsLVP~~~-----k~~dKasIL~eAI~YIK~Lq~qv 185 (242)
.+..|+.+||+||++||+.|.+|++|||.+. .+++|++||..||+||+.||++.
T Consensus 5 rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~ 63 (65)
T d1an4a_ 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999763 24799999999999999999764
No 9
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.07 E-value=24 Score=22.80 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHHhhhhcCCCcc
Q 042908 137 SLAERVRREKINERLRCLQDLVPGCYK 163 (242)
Q Consensus 137 s~aERrRR~kIne~~~~LrsLVP~~~k 163 (242)
.+++|.+|...++-+..|+.+-|..++
T Consensus 2 ~~i~~i~~~e~~e~~~~Lk~MFP~~D~ 28 (54)
T d1mn3a_ 2 SLIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 368899999999999999999998644
No 10
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=38.86 E-value=12 Score=26.27 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhcCCCccC---CChhhhHHHHHHHHHHHH
Q 042908 144 REKINERLRCLQDLVPGCYKT---MGMAVMLDVIINYVRSLQ 182 (242)
Q Consensus 144 R~kIne~~~~LrsLVP~~~k~---~dKasIL~eAI~YIK~Lq 182 (242)
.+.|...|..-+.++|+..-. +.+.--+...|.|||.+|
T Consensus 58 ~~~L~~~l~~P~~~~pgt~M~~~gl~~~~d~~dliaYLks~~ 99 (99)
T d1ql3a_ 58 PEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQQ 99 (99)
T ss_dssp HHHHHHHHHCHHHHSTTCSCCCCCCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhChHhhCCCCCCCCCCCCCHHHHHHHHHHHhhcC
Confidence 357888889999999974221 234455778888888765
No 11
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=31.91 E-value=8.8 Score=25.79 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCCC
Q 042908 176 NYVRSLQNQIEFLSMKLSAASMYYDFNS 203 (242)
Q Consensus 176 ~YIK~Lq~qvq~L~~~l~a~~~~~~~n~ 203 (242)
+||..|+.....|+..+..+...+.-|+
T Consensus 3 eYl~~L~~~~~~L~~~i~k~~~~leknP 30 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNKALKDIEKRP 30 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6999999999999988877655544443
No 12
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Probab=22.20 E-value=19 Score=26.59 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=22.4
Q ss_pred hhhcCCCccCCChhhhHHHHHHHHHHHHHH
Q 042908 155 QDLVPGCYKTMGMAVMLDVIINYVRSLQNQ 184 (242)
Q Consensus 155 rsLVP~~~k~~dKasIL~eAI~YIK~Lq~q 184 (242)
.-+||+-...++ ...|+.+++||+.+++|
T Consensus 190 ~~i~pgHg~~~~-~~~i~~~~~~l~~~~~~ 218 (219)
T d1m2xa_ 190 QYVVAGHDDWKD-QRSIQHTLDLINEYQQK 218 (219)
T ss_dssp SEEEESBSCCCS-TTHHHHHHHHHHHHHHT
T ss_pred cEEECCCCCccC-hHHHHHHHHHHHHHHhC
Confidence 457788877555 45578999999999886
No 13
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.06 E-value=61 Score=22.51 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhcCCCccC---CChhhhHHHHHHHHHHH
Q 042908 144 REKINERLRCLQDLVPGCYKT---MGMAVMLDVIINYVRSL 181 (242)
Q Consensus 144 R~kIne~~~~LrsLVP~~~k~---~dKasIL~eAI~YIK~L 181 (242)
.+.|...|..=+.++|+..-. +.+..-+...|.||+.+
T Consensus 66 ~~~L~~~l~~P~~~~pgt~M~~~gi~~~~d~~~liaYLks~ 106 (108)
T d1ycca_ 66 ENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 106 (108)
T ss_dssp HHHHHHHHHCHHHHSTTCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhccCCCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 466778888888999974311 23445577788898875
Done!