BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042910
MKFCKKYQEYMQGQERKLPGVGFKKLKKILKMCRKEFQSQKEINKGVVDTQTCPHQCPVC
DGTFFPSLLNEMSAIVGCFNERAQKLLELHLASGFSKCLIWFKGKLHGTHGALIQEGKDL
VTYALINAIAIRKILKKYDKVHYSKQGQAFKSQAQSMHVEILQSPWLCELMAFHINLRDT
KVNTRKAPAFFEGCYLKFNDDKPSLSCELFDSVKLDIDLTCSICLVSQSFILFL

High Scoring Gene Products

Symbol, full name Information P value
NLA
nitrogen limitation adaptation
protein from Arabidopsis thaliana 9.6e-73
AT2G38920 protein from Arabidopsis thaliana 6.7e-33

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042910
        (234 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2024675 - symbol:NLA "nitrogen limitation adap...   735  9.6e-73   1
TAIR|locus:2064935 - symbol:AT2G38920 species:3702 "Arabi...   359  6.7e-33   1


>TAIR|locus:2024675 [details] [associations]
            symbol:NLA "nitrogen limitation adaptation" species:3702
            "Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010167 "response
            to nitrate" evidence=IMP] [GO:0004842 "ubiquitin-protein ligase
            activity" evidence=TAS] [GO:0009626 "plant-type hypersensitive
            response" evidence=IMP] [GO:0009627 "systemic acquired resistance"
            evidence=IMP] [GO:0009697 "salicylic acid biosynthetic process"
            evidence=IMP] [GO:0009751 "response to salicylic acid stimulus"
            evidence=IEP] [GO:0010337 "regulation of salicylic acid metabolic
            process" evidence=IMP] [GO:0042742 "defense response to bacterium"
            evidence=IMP] [GO:0080021 "response to benzoic acid stimulus"
            evidence=IEP;IMP] [GO:0006817 "phosphate ion transport"
            evidence=RCA] [GO:0016036 "cellular response to phosphate
            starvation" evidence=RCA] InterPro:IPR001841 PROSITE:PS50089
            SMART:SM00184 UniPathway:UPA00143 Prosite:PS00518 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0016607
            GO:GO:0042742 GO:GO:0008270 GO:GO:0009627 GO:GO:0009751
            Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0009626 GO:GO:0004842
            InterPro:IPR017907 HOGENOM:HOG000240281 KO:K16275
            ProtClustDB:CLSN2687631 InterPro:IPR004331 Pfam:PF03105
            PROSITE:PS51382 EMBL:DQ059096 EMBL:AC009525 EMBL:AK229396
            EMBL:AY088823 EMBL:BT044616 IPI:IPI00533758 IPI:IPI00891550
            PIR:H86158 RefSeq:NP_001117218.1 RefSeq:NP_563667.1
            UniGene:At.22880 UniGene:At.46895 ProteinModelPortal:Q9SRX9
            SMR:Q9SRX9 STRING:Q9SRX9 EnsemblPlants:AT1G02860.1 GeneID:839559
            KEGG:ath:AT1G02860 TAIR:At1g02860 eggNOG:NOG291077
            InParanoid:Q9SRX9 OMA:CYMCACS PhylomeDB:Q9SRX9
            Genevestigator:Q9SRX9 GO:GO:0010337 GO:GO:0080021 GO:GO:0010167
            GO:GO:0009697 Uniprot:Q9SRX9
        Length = 335

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 147/236 (62%), Positives = 169/236 (71%)

Query:     1 MKFCKKYQEYMQGQERK--LPGVGFXXXXXXXXMCRKEFQSQKEINKGVVDTQTCPHQCP 58
             MKFCKKY+EYMQGQ+ K  LPGVGF         CR+     +      ++   C  +CP
Sbjct:     1 MKFCKKYEEYMQGQKEKKNLPGVGFKKLKKILKRCRRNHVPSRISFTDAIN-HNCSRECP 59

Query:    59 VCDGTFFPSLLNEMSAIVGCFNERAQKLLELHLASGFSKCLIWFKGKLHGT-HGALIQEG 117
             VCDGTFFP LL EM  +VG FNE AQKLLELHLASGF+KCL W +G      H  LIQEG
Sbjct:    60 VCDGTFFPELLKEMEDVVGWFNEHAQKLLELHLASGFTKCLTWLRGNSRKKDHHGLIQEG 119

Query:   118 KDLVTYALINAIAIRKILKKYDKVHYSKQGQAFKSQAQSMHVEILQSPWLCELMAFHINL 177
             KDLV YALINA+AIRKILKKYDK+H S+QGQAFK+Q Q M +EILQSPWLCELMAFHINL
Sbjct:   120 KDLVNYALINAVAIRKILKKYDKIHESRQGQAFKTQVQKMRIEILQSPWLCELMAFHINL 179

Query:   178 RDTKVN---TRKAP-----AFFEGCYLKFNDDKPSLSCELFDSVKLDIDLTCSICL 225
             +++K     T  +P     A F+GC L F+D KP LSCEL DSVK+DIDLTCSICL
Sbjct:   180 KESKKESGATITSPPPPVHALFDGCALTFDDGKPLLSCELSDSVKVDIDLTCSICL 235


>TAIR|locus:2064935 [details] [associations]
            symbol:AT2G38920 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006817 "phosphate ion transport" evidence=RCA]
            [GO:0009062 "fatty acid catabolic process" evidence=RCA]
            [GO:0016036 "cellular response to phosphate starvation"
            evidence=RCA] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
            UniPathway:UPA00143 Prosite:PS00518 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0016874 GO:GO:0008270
            GO:GO:0016567 Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC005770
            InterPro:IPR017907 EMBL:AK119158 EMBL:BT006237 IPI:IPI00526484
            PIR:A84811 RefSeq:NP_181426.2 UniGene:At.37231
            ProteinModelPortal:Q8GW10 SMR:Q8GW10 PaxDb:Q8GW10
            EnsemblPlants:AT2G38920.1 GeneID:818477 KEGG:ath:AT2G38920
            TAIR:At2g38920 eggNOG:NOG314482 HOGENOM:HOG000240281
            InParanoid:Q8GW10 KO:K16275 OMA:MNAIAIR PhylomeDB:Q8GW10
            ProtClustDB:CLSN2687631 Genevestigator:Q8GW10 InterPro:IPR004331
            Pfam:PF03105 PROSITE:PS51382 Uniprot:Q8GW10
        Length = 335

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 89/237 (37%), Positives = 127/237 (53%)

Query:     1 MKFCKKYQEYMQGQER----KLPGVGFXXXXXXXXMCRKEFQSQKEINKGVVDTQT---- 52
             MKF + + EY+ G+E     K   V +         C K   S K  +  ++ + T    
Sbjct:     1 MKFGETFTEYLHGEEEWFLEKCRFVEYKKLKKVLKKC-KTCNSTKSDDGQIIPSATSSSL 59

Query:    53 ---CPHQ-CPVCDGTFFPSLLNEMSAIVGCFNERAQKLLELHLASGFSKCLIWFKGKLHG 108
                C  + CP CD  FF  L+ E + I G F  R + LL LH+A+G  + +I  +     
Sbjct:    60 SDSCECKACPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRYMIRLRRCFTD 119

Query:   109 THGALIQEGKDLVTYALINAIAIRKILKKYDKVHYSKQGQAFKSQAQSMHVEILQSPWLC 168
                AL+QEG+ L+ Y  +NAIAIRKILKKYDKVH S+ G+ FK + ++  +E+L SPWL 
Sbjct:   120 EKQALVQEGQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMRAERIELLHSPWLI 179

Query:   169 ELMAFHINLRDTKVNTRKAPAFFEGCYLKFNDDKPSLSCELFDSVKLDIDLTCSICL 225
             EL AF++N     V   K       C    N+D+P L   L +S++L+ DLTC+ICL
Sbjct:   180 ELGAFYLNSGLDNVGNFKNSFGRVACE-NLNEDQPVLKLMLPNSIELEYDLTCAICL 235


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      234       226   0.00078  113 3  11 22  0.47    32
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  192 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.30u 0.13s 20.43t   Elapsed:  00:00:01
  Total cpu time:  20.30u 0.13s 20.43t   Elapsed:  00:00:01
  Start:  Sat May 11 08:20:47 2013   End:  Sat May 11 08:20:48 2013

Back to top