Query 042910
Match_columns 234
No_of_seqs 121 out of 205
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e4u_A Transcriptional repress 72.1 0.89 3E-05 32.7 0.3 16 214-229 7-22 (78)
2 3ng2_A RNF4, snurf, ring finge 51.2 3.5 0.00012 27.6 0.2 18 212-229 4-21 (71)
3 2ysj_A Tripartite motif-contai 50.5 4 0.00014 26.9 0.4 16 214-229 16-31 (63)
4 2yur_A Retinoblastoma-binding 40.8 6.2 0.00021 27.1 0.2 16 214-229 11-26 (74)
5 2ecj_A Tripartite motif-contai 40.6 6.7 0.00023 25.0 0.3 15 215-229 12-26 (58)
6 2d6f_C Glutamyl-tRNA(Gln) amid 40.2 7.3 0.00025 38.5 0.6 17 188-204 22-38 (619)
7 3lrq_A E3 ubiquitin-protein li 40.1 6.3 0.00021 28.8 0.1 16 214-229 18-33 (100)
8 4ayc_A E3 ubiquitin-protein li 40.1 6.6 0.00022 30.3 0.2 11 218-228 53-63 (138)
9 2djb_A Polycomb group ring fin 39.3 6.9 0.00024 26.6 0.2 15 214-228 11-25 (72)
10 2ysl_A Tripartite motif-contai 38.6 7.6 0.00026 26.1 0.3 16 214-229 16-31 (73)
11 2egp_A Tripartite motif-contai 38.5 7.1 0.00024 26.6 0.2 14 215-228 9-22 (79)
12 1bor_A Transcription factor PM 38.2 7.3 0.00025 25.4 0.2 11 218-228 6-16 (56)
13 1iym_A EL5; ring-H2 finger, ub 37.8 8.2 0.00028 24.5 0.4 15 215-229 2-16 (55)
14 2ep4_A Ring finger protein 24; 37.0 8.4 0.00029 26.0 0.4 15 214-228 11-25 (74)
15 3fl2_A E3 ubiquitin-protein li 36.8 7.6 0.00026 29.2 0.1 15 215-229 49-63 (124)
16 2ecy_A TNF receptor-associated 35.5 8.8 0.0003 25.5 0.3 14 215-228 12-25 (66)
17 1v87_A Deltex protein 2; ring- 34.7 9.3 0.00032 28.1 0.3 12 217-228 24-35 (114)
18 1zq1_C Glutamyl-tRNA(Gln) amid 34.1 11 0.00039 37.2 0.9 14 189-203 29-42 (633)
19 2csy_A Zinc finger protein 183 33.8 10 0.00034 26.2 0.3 14 215-228 12-25 (81)
20 2ecw_A Tripartite motif-contai 33.0 8.8 0.0003 26.2 -0.1 14 215-228 16-29 (85)
21 2ea6_A Ring finger protein 4; 32.6 11 0.00038 24.7 0.4 15 215-229 12-26 (69)
22 2ecv_A Tripartite motif-contai 32.2 11 0.00037 25.7 0.3 15 215-229 16-30 (85)
23 2ect_A Ring finger protein 126 32.1 8.9 0.0003 26.2 -0.2 14 215-228 12-25 (78)
24 2d8t_A Dactylidin, ring finger 31.5 12 0.0004 25.3 0.4 13 216-228 13-25 (71)
25 2ct2_A Tripartite motif protei 30.2 13 0.00045 25.6 0.5 16 214-229 11-26 (88)
26 2ecm_A Ring finger and CHY zin 28.8 13 0.00046 23.3 0.3 11 218-228 5-15 (55)
27 2kiz_A E3 ubiquitin-protein li 28.8 12 0.00041 24.9 0.0 15 214-228 10-24 (69)
28 2ckl_B Ubiquitin ligase protei 27.8 12 0.00043 29.4 -0.0 15 215-229 51-65 (165)
29 3knv_A TNF receptor-associated 27.8 14 0.00048 29.0 0.2 15 214-228 27-41 (141)
30 2y43_A E3 ubiquitin-protein li 27.6 13 0.00046 26.6 0.1 15 214-228 18-32 (99)
31 2l0b_A E3 ubiquitin-protein li 25.4 15 0.00052 26.2 0.1 15 214-228 36-50 (91)
32 2ecg_A Baculoviral IAP repeat- 25.4 14 0.00046 25.5 -0.2 16 215-230 22-37 (75)
33 2ecn_A Ring finger protein 141 24.7 19 0.00065 23.9 0.5 14 215-228 12-25 (70)
34 2ecl_A Ring-box protein 2; RNF 24.0 20 0.00069 25.1 0.5 11 218-228 15-25 (81)
35 1rmd_A RAG1; V(D)J recombinati 23.5 18 0.00061 26.7 0.1 15 215-229 20-34 (116)
36 1z6u_A NP95-like ring finger p 23.4 18 0.00061 28.6 0.1 14 215-228 75-88 (150)
37 1wgm_A Ubiquitin conjugation f 22.8 20 0.00068 26.4 0.3 13 216-228 20-32 (98)
38 2kr4_A Ubiquitin conjugation f 21.6 22 0.00075 25.2 0.3 14 215-228 11-24 (85)
39 1x4j_A Ring finger protein 38; 21.5 32 0.0011 23.2 1.1 13 216-228 21-33 (75)
40 3mjh_B Early endosome antigen 20.1 26 0.00089 21.7 0.3 9 219-227 6-14 (34)
No 1
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=72.07 E-value=0.89 Score=32.67 Aligned_cols=16 Identities=13% Similarity=0.491 Sum_probs=12.9
Q ss_pred eeeeceecccccchhh
Q 042910 214 KLDIDLTCSICLVSQS 229 (234)
Q Consensus 214 ~~~~~ltc~icl~~~~ 229 (234)
.++-+++||||+|.++
T Consensus 7 ~~~~~~~CpICle~~~ 22 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLE 22 (78)
T ss_dssp CCCCCCBCTTTCCBCC
T ss_pred ccccCCcCCccCccCc
Confidence 3567899999999774
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=51.25 E-value=3.5 Score=27.59 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=12.6
Q ss_pred ceeeeeceecccccchhh
Q 042910 212 SVKLDIDLTCSICLVSQS 229 (234)
Q Consensus 212 s~~~~~~ltc~icl~~~~ 229 (234)
+...+-+++|+||++...
T Consensus 4 ~~~~~~~~~C~IC~~~~~ 21 (71)
T 3ng2_A 4 GLRPSGTVSCPICMDGYS 21 (71)
T ss_dssp --CCTTCCBCTTTCCBHH
T ss_pred CCCCCCCCCCcccChhhh
Confidence 445566889999998753
No 3
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.45 E-value=4 Score=26.93 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=12.3
Q ss_pred eeeeceecccccchhh
Q 042910 214 KLDIDLTCSICLVSQS 229 (234)
Q Consensus 214 ~~~~~ltc~icl~~~~ 229 (234)
.++-+++|+||++...
T Consensus 16 ~~~~~~~C~IC~~~~~ 31 (63)
T 2ysj_A 16 KLQEEVICPICLDILQ 31 (63)
T ss_dssp CCCCCCBCTTTCSBCS
T ss_pred hCccCCCCCcCCchhC
Confidence 3566899999998643
No 4
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=40.80 E-value=6.2 Score=27.06 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.2
Q ss_pred eeeeceecccccchhh
Q 042910 214 KLDIDLTCSICLVSQS 229 (234)
Q Consensus 214 ~~~~~ltc~icl~~~~ 229 (234)
.++-+++|+||++...
T Consensus 11 ~~~~~~~C~IC~~~~~ 26 (74)
T 2yur_A 11 PIPDELLCLICKDIMT 26 (74)
T ss_dssp CSCGGGSCSSSCCCCT
T ss_pred cCCCCCCCcCCChHHh
Confidence 3566899999998653
No 5
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.63 E-value=6.7 Score=25.03 Aligned_cols=15 Identities=33% Similarity=0.844 Sum_probs=11.4
Q ss_pred eeeceecccccchhh
Q 042910 215 LDIDLTCSICLVSQS 229 (234)
Q Consensus 215 ~~~~ltc~icl~~~~ 229 (234)
++-+++|+||++...
T Consensus 12 ~~~~~~C~IC~~~~~ 26 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK 26 (58)
T ss_dssp SCCCCBCSSSCCBCS
T ss_pred cccCCCCccCCcccC
Confidence 455789999998653
No 6
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=40.25 E-value=7.3 Score=38.48 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=14.2
Q ss_pred CCccCcceeeecCCCCe
Q 042910 188 PAFFEGCYLKFNDDKPS 204 (234)
Q Consensus 188 ~~~~~~~~~~~~~~~~~ 204 (234)
..+|++|+-+|.++.|.
T Consensus 22 tKlFc~c~t~~~~~~p~ 38 (619)
T 2d6f_C 22 SKLFCPCRTELTDSEPD 38 (619)
T ss_dssp BCSSSCSBSSCCCSCCS
T ss_pred CcccCCCCccccCCCCc
Confidence 45999999999877874
No 7
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=40.13 E-value=6.3 Score=28.79 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=12.4
Q ss_pred eeeeceecccccchhh
Q 042910 214 KLDIDLTCSICLVSQS 229 (234)
Q Consensus 214 ~~~~~ltc~icl~~~~ 229 (234)
.++-+++|+||++...
T Consensus 18 ~l~~~~~C~IC~~~~~ 33 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLR 33 (100)
T ss_dssp HHHHHTBCTTTCSBCS
T ss_pred cCCCCCCCccCCcccc
Confidence 4566899999998653
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=40.10 E-value=6.6 Score=30.33 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=8.8
Q ss_pred ceecccccchh
Q 042910 218 DLTCSICLVSQ 228 (234)
Q Consensus 218 ~ltc~icl~~~ 228 (234)
+++||||++..
T Consensus 53 ~~~C~iC~~~~ 63 (138)
T 4ayc_A 53 ELQCIICSEYF 63 (138)
T ss_dssp HSBCTTTCSBC
T ss_pred cCCCcccCccc
Confidence 56899999864
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.29 E-value=6.9 Score=26.55 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=11.8
Q ss_pred eeeeceecccccchh
Q 042910 214 KLDIDLTCSICLVSQ 228 (234)
Q Consensus 214 ~~~~~ltc~icl~~~ 228 (234)
.++-+++|+||++..
T Consensus 11 ~~~~~~~C~IC~~~~ 25 (72)
T 2djb_A 11 ELTPYILCSICKGYL 25 (72)
T ss_dssp CCCGGGSCTTTSSCC
T ss_pred hcCCCCCCCCCChHH
Confidence 356689999999865
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.64 E-value=7.6 Score=26.05 Aligned_cols=16 Identities=38% Similarity=0.721 Sum_probs=12.1
Q ss_pred eeeeceecccccchhh
Q 042910 214 KLDIDLTCSICLVSQS 229 (234)
Q Consensus 214 ~~~~~ltc~icl~~~~ 229 (234)
.++-+++|+||++...
T Consensus 16 ~~~~~~~C~IC~~~~~ 31 (73)
T 2ysl_A 16 KLQEEVICPICLDILQ 31 (73)
T ss_dssp CCCCCCBCTTTCSBCS
T ss_pred hCccCCEeccCCcccC
Confidence 3566789999998643
No 11
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=38.48 E-value=7.1 Score=26.56 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=11.2
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
++-+++|+||++..
T Consensus 9 ~~~~~~C~IC~~~~ 22 (79)
T 2egp_A 9 VQEEVTCPICLELL 22 (79)
T ss_dssp CCCCCEETTTTEEC
T ss_pred cccCCCCcCCCccc
Confidence 45679999999864
No 12
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.18 E-value=7.3 Score=25.45 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=9.0
Q ss_pred ceecccccchh
Q 042910 218 DLTCSICLVSQ 228 (234)
Q Consensus 218 ~ltc~icl~~~ 228 (234)
+++|+||++..
T Consensus 6 ~~~C~IC~~~~ 16 (56)
T 1bor_A 6 FLRCQQCQAEA 16 (56)
T ss_dssp CSSCSSSCSSC
T ss_pred CCCceEeCCcc
Confidence 68899999864
No 13
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=37.77 E-value=8.2 Score=24.46 Aligned_cols=15 Identities=27% Similarity=0.791 Sum_probs=11.2
Q ss_pred eeeceecccccchhh
Q 042910 215 LDIDLTCSICLVSQS 229 (234)
Q Consensus 215 ~~~~ltc~icl~~~~ 229 (234)
+|-+.+|+||++...
T Consensus 2 ~~~~~~C~IC~~~~~ 16 (55)
T 1iym_A 2 MDDGVECAVCLAELE 16 (55)
T ss_dssp CCCSCCCTTTCCCCC
T ss_pred CCCCCcCccCCcccc
Confidence 456789999998753
No 14
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.03 E-value=8.4 Score=26.03 Aligned_cols=15 Identities=27% Similarity=0.749 Sum_probs=11.8
Q ss_pred eeeeceecccccchh
Q 042910 214 KLDIDLTCSICLVSQ 228 (234)
Q Consensus 214 ~~~~~ltc~icl~~~ 228 (234)
.++.+.+|+||++..
T Consensus 11 ~~~~~~~C~IC~~~~ 25 (74)
T 2ep4_A 11 ELNLHELCAVCLEDF 25 (74)
T ss_dssp CCCCSCBCSSSCCBC
T ss_pred cCCCCCCCcCCCccc
Confidence 356678999999874
No 15
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=36.79 E-value=7.6 Score=29.21 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=11.3
Q ss_pred eeeceecccccchhh
Q 042910 215 LDIDLTCSICLVSQS 229 (234)
Q Consensus 215 ~~~~ltc~icl~~~~ 229 (234)
++-+++|+||++...
T Consensus 49 ~~~~~~C~IC~~~~~ 63 (124)
T 3fl2_A 49 VEETFQCICCQELVF 63 (124)
T ss_dssp HHHHTBCTTTSSBCS
T ss_pred CccCCCCCcCChHHc
Confidence 455789999998643
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.46 E-value=8.8 Score=25.46 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=10.9
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
++-+++|+||++..
T Consensus 12 ~~~~~~C~IC~~~~ 25 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL 25 (66)
T ss_dssp CCCCEECTTTCCEE
T ss_pred CCcCCCCCCCChHh
Confidence 35578999999864
No 17
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=34.69 E-value=9.3 Score=28.05 Aligned_cols=12 Identities=25% Similarity=0.609 Sum_probs=9.8
Q ss_pred eceecccccchh
Q 042910 217 IDLTCSICLVSQ 228 (234)
Q Consensus 217 ~~ltc~icl~~~ 228 (234)
-+.+|+||++..
T Consensus 24 ~~~~C~ICl~~~ 35 (114)
T 1v87_A 24 PEEDCIICMEKL 35 (114)
T ss_dssp CSCEETTTTEET
T ss_pred CCCcCccCChhh
Confidence 356999999975
No 18
>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Probab=34.07 E-value=11 Score=37.24 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=11.9
Q ss_pred CccCcceeeecCCCC
Q 042910 189 AFFEGCYLKFNDDKP 203 (234)
Q Consensus 189 ~~~~~~~~~~~~~~~ 203 (234)
.+|++|+-+|++ .|
T Consensus 29 KlFc~c~t~~~~-~p 42 (633)
T 1zq1_C 29 KLFSPVPSELSD-KV 42 (633)
T ss_dssp CTTSSCBCCCCS-CC
T ss_pred cccCCCCcccCC-Cc
Confidence 499999999977 55
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.83 E-value=10 Score=26.25 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=10.8
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
.+-+++|+||++..
T Consensus 12 ~~~~~~C~IC~~~~ 25 (81)
T 2csy_A 12 EEIPFRCFICRQAF 25 (81)
T ss_dssp CCCCSBCSSSCSBC
T ss_pred CCCCCCCcCCCchh
Confidence 45578999999864
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.04 E-value=8.8 Score=26.17 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.2
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
++-+++|+||++..
T Consensus 16 ~~~~~~C~IC~~~~ 29 (85)
T 2ecw_A 16 IKEEVTCPICLELL 29 (85)
T ss_dssp CCTTTSCTTTCSCC
T ss_pred CccCCCCcCCChhh
Confidence 45678999999874
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.64 E-value=11 Score=24.68 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.6
Q ss_pred eeeceecccccchhh
Q 042910 215 LDIDLTCSICLVSQS 229 (234)
Q Consensus 215 ~~~~ltc~icl~~~~ 229 (234)
++-+.+|+||++...
T Consensus 12 ~~~~~~C~IC~~~~~ 26 (69)
T 2ea6_A 12 PSGTVSCPICMDGYS 26 (69)
T ss_dssp TTCCCCCTTTCCCHH
T ss_pred CCCCCCCcccCcccc
Confidence 456789999998753
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.24 E-value=11 Score=25.69 Aligned_cols=15 Identities=33% Similarity=0.753 Sum_probs=11.5
Q ss_pred eeeceecccccchhh
Q 042910 215 LDIDLTCSICLVSQS 229 (234)
Q Consensus 215 ~~~~ltc~icl~~~~ 229 (234)
++-+++|+||++...
T Consensus 16 ~~~~~~C~IC~~~~~ 30 (85)
T 2ecv_A 16 VKEEVTCPICLELLT 30 (85)
T ss_dssp CCCCCCCTTTCSCCS
T ss_pred ccCCCCCCCCCcccC
Confidence 455789999998753
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.06 E-value=8.9 Score=26.19 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=10.9
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
.+-+.+|+||++..
T Consensus 12 ~~~~~~C~IC~~~~ 25 (78)
T 2ect_A 12 VGSGLECPVCKEDY 25 (78)
T ss_dssp SSSSCCCTTTTSCC
T ss_pred CCCCCCCeeCCccc
Confidence 45678999998864
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.55 E-value=12 Score=25.26 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=10.2
Q ss_pred eeceecccccchh
Q 042910 216 DIDLTCSICLVSQ 228 (234)
Q Consensus 216 ~~~ltc~icl~~~ 228 (234)
+-+++|+||++..
T Consensus 13 ~~~~~C~IC~~~~ 25 (71)
T 2d8t_A 13 LTVPECAICLQTC 25 (71)
T ss_dssp SSCCBCSSSSSBC
T ss_pred CCCCCCccCCccc
Confidence 4568999999864
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.21 E-value=13 Score=25.62 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=11.9
Q ss_pred eeeeceecccccchhh
Q 042910 214 KLDIDLTCSICLVSQS 229 (234)
Q Consensus 214 ~~~~~ltc~icl~~~~ 229 (234)
.++-+++|+||++...
T Consensus 11 ~~~~~~~C~IC~~~~~ 26 (88)
T 2ct2_A 11 ALREVLECPICMESFT 26 (88)
T ss_dssp CCCSCCBCTTTCCBCC
T ss_pred hccCCCCCccCCcccc
Confidence 3455789999998754
No 26
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=28.84 E-value=13 Score=23.33 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=8.9
Q ss_pred ceecccccchh
Q 042910 218 DLTCSICLVSQ 228 (234)
Q Consensus 218 ~ltc~icl~~~ 228 (234)
+.+|+||++..
T Consensus 5 ~~~C~IC~~~~ 15 (55)
T 2ecm_A 5 SSGCPICLEDI 15 (55)
T ss_dssp CCSCTTTCCCC
T ss_pred CCcCcccChhh
Confidence 56899999875
No 27
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=28.76 E-value=12 Score=24.86 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=11.1
Q ss_pred eeeeceecccccchh
Q 042910 214 KLDIDLTCSICLVSQ 228 (234)
Q Consensus 214 ~~~~~ltc~icl~~~ 228 (234)
..+-+.+|+||++..
T Consensus 10 ~~~~~~~C~IC~~~~ 24 (69)
T 2kiz_A 10 EEDTEEKCTICLSIL 24 (69)
T ss_dssp STTCCCSBTTTTBCC
T ss_pred cCCCCCCCeeCCccc
Confidence 345678999998754
No 28
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=27.84 E-value=12 Score=29.40 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=11.7
Q ss_pred eeeceecccccchhh
Q 042910 215 LDIDLTCSICLVSQS 229 (234)
Q Consensus 215 ~~~~ltc~icl~~~~ 229 (234)
++-+++|+||++...
T Consensus 51 ~~~~~~C~IC~~~~~ 65 (165)
T 2ckl_B 51 LHSELMCPICLDMLK 65 (165)
T ss_dssp CHHHHBCTTTSSBCS
T ss_pred CCCCCCCcccChHhh
Confidence 456789999998753
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=27.77 E-value=14 Score=28.97 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.3
Q ss_pred eeeeceecccccchh
Q 042910 214 KLDIDLTCSICLVSQ 228 (234)
Q Consensus 214 ~~~~~ltc~icl~~~ 228 (234)
.++-+++|+||++..
T Consensus 27 ~l~~~~~C~IC~~~~ 41 (141)
T 3knv_A 27 KLEAKYLCSACRNVL 41 (141)
T ss_dssp GCCGGGBCTTTCSBC
T ss_pred cCCcCcCCCCCChhh
Confidence 467789999999864
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=27.62 E-value=13 Score=26.59 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=11.6
Q ss_pred eeeeceecccccchh
Q 042910 214 KLDIDLTCSICLVSQ 228 (234)
Q Consensus 214 ~~~~~ltc~icl~~~ 228 (234)
.++-+++|+||++..
T Consensus 18 ~~~~~~~C~IC~~~~ 32 (99)
T 2y43_A 18 TIDDLLRCGICFEYF 32 (99)
T ss_dssp HHHHHTBCTTTCSBC
T ss_pred hCCCCCCcccCChhh
Confidence 345679999999864
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=25.41 E-value=15 Score=26.17 Aligned_cols=15 Identities=20% Similarity=0.623 Sum_probs=11.5
Q ss_pred eeeeceecccccchh
Q 042910 214 KLDIDLTCSICLVSQ 228 (234)
Q Consensus 214 ~~~~~ltc~icl~~~ 228 (234)
..+-+.+|+||++..
T Consensus 36 ~~~~~~~C~IC~~~~ 50 (91)
T 2l0b_A 36 AVGQEMCCPICCSEY 50 (91)
T ss_dssp SSSSCSEETTTTEEC
T ss_pred ccCCCCCCcccChhh
Confidence 346688999999764
No 32
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.39 E-value=14 Score=25.46 Aligned_cols=16 Identities=25% Similarity=0.519 Sum_probs=11.7
Q ss_pred eeeceecccccchhhh
Q 042910 215 LDIDLTCSICLVSQSF 230 (234)
Q Consensus 215 ~~~~ltc~icl~~~~~ 230 (234)
++-+++|+||++...-
T Consensus 22 ~~~~~~C~IC~~~~~~ 37 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIA 37 (75)
T ss_dssp HHHHHSCSSSCSSCCC
T ss_pred CCCCCCCCcCCCCCCC
Confidence 4557899999987543
No 33
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.66 E-value=19 Score=23.88 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=10.6
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
++-+++|+||++..
T Consensus 12 ~~~~~~C~IC~~~~ 25 (70)
T 2ecn_A 12 LTDEEECCICMDGR 25 (70)
T ss_dssp CCCCCCCSSSCCSC
T ss_pred CCCCCCCeeCCcCc
Confidence 34578999999864
No 34
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.02 E-value=20 Score=25.05 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=7.2
Q ss_pred ceecccccchh
Q 042910 218 DLTCSICLVSQ 228 (234)
Q Consensus 218 ~ltc~icl~~~ 228 (234)
+.+|+||++..
T Consensus 15 ~~~C~IC~~~~ 25 (81)
T 2ecl_A 15 CDTCAICRVQV 25 (81)
T ss_dssp CSCBTTTTBCT
T ss_pred CCCCcccChhh
Confidence 45677777654
No 35
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=23.46 E-value=18 Score=26.70 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=11.4
Q ss_pred eeeceecccccchhh
Q 042910 215 LDIDLTCSICLVSQS 229 (234)
Q Consensus 215 ~~~~ltc~icl~~~~ 229 (234)
++-+++||||++...
T Consensus 20 ~~~~~~C~IC~~~~~ 34 (116)
T 1rmd_A 20 FVKSISCQICEHILA 34 (116)
T ss_dssp HHHHTBCTTTCSBCS
T ss_pred ccCCCCCCCCCcHhc
Confidence 455799999998643
No 36
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=23.41 E-value=18 Score=28.59 Aligned_cols=14 Identities=21% Similarity=0.489 Sum_probs=10.5
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
++-+++|+||++..
T Consensus 75 l~~~~~C~IC~~~~ 88 (150)
T 1z6u_A 75 LEQSFMCVCCQELV 88 (150)
T ss_dssp HHHHTBCTTTSSBC
T ss_pred CccCCEeecCChhh
Confidence 34468999999864
No 37
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=22.78 E-value=20 Score=26.37 Aligned_cols=13 Identities=8% Similarity=-0.215 Sum_probs=10.1
Q ss_pred eeceecccccchh
Q 042910 216 DIDLTCSICLVSQ 228 (234)
Q Consensus 216 ~~~ltc~icl~~~ 228 (234)
.-.++||||++..
T Consensus 20 p~~~~CpI~~~~m 32 (98)
T 1wgm_A 20 CDEFLDPIMSTLM 32 (98)
T ss_dssp CTTTBCTTTCSBC
T ss_pred cHhcCCcCccccc
Confidence 4478999999753
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=21.56 E-value=22 Score=25.24 Aligned_cols=14 Identities=0% Similarity=-0.216 Sum_probs=10.5
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
+.-.++||||++..
T Consensus 11 ~p~~~~CpI~~~~m 24 (85)
T 2kr4_A 11 APDEFRDPLMDTLM 24 (85)
T ss_dssp CCTTTBCTTTCSBC
T ss_pred CchheECcccCchh
Confidence 34578999999754
No 39
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.53 E-value=32 Score=23.20 Aligned_cols=13 Identities=15% Similarity=0.562 Sum_probs=8.4
Q ss_pred eeceecccccchh
Q 042910 216 DIDLTCSICLVSQ 228 (234)
Q Consensus 216 ~~~ltc~icl~~~ 228 (234)
+-+.+|+||++..
T Consensus 21 ~~~~~C~IC~~~~ 33 (75)
T 1x4j_A 21 SEQTLCVVCMCDF 33 (75)
T ss_dssp SSCCEETTTTEEC
T ss_pred CCCCCCeECCccc
Confidence 3456788887653
No 40
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.05 E-value=26 Score=21.71 Aligned_cols=9 Identities=33% Similarity=0.969 Sum_probs=7.1
Q ss_pred eecccccch
Q 042910 219 LTCSICLVS 227 (234)
Q Consensus 219 ltc~icl~~ 227 (234)
-+||||+..
T Consensus 6 FiCP~C~~~ 14 (34)
T 3mjh_B 6 FICPQCMKS 14 (34)
T ss_dssp EECTTTCCE
T ss_pred cCCcHHHHH
Confidence 589999754
Done!