Query 042910
Match_columns 234
No_of_seqs 121 out of 205
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 19:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042910.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042910hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jm7b_ g.44.1.1 (B:) bard1 RI 40.9 2.8 0.0002 28.9 0.1 14 215-228 19-32 (97)
2 d1jm7a_ g.44.1.1 (A:) brca1 RI 38.0 3.1 0.00023 29.0 -0.0 13 216-228 19-31 (103)
3 d1bora_ g.44.1.1 (A:) Acute pr 33.6 4.5 0.00032 25.7 0.2 10 219-228 7-16 (56)
4 d1iyma_ g.44.1.1 (A:) EL5 RING 32.1 5.2 0.00038 25.1 0.3 13 216-228 3-15 (55)
5 d1rmda2 g.44.1.1 (A:1-86) V(D) 25.2 7.3 0.00053 26.8 0.1 13 217-229 22-34 (86)
6 d1vyxa_ g.44.1.3 (A:) IE1B pro 22.5 9.3 0.00068 23.8 0.2 12 218-229 6-17 (60)
7 d2dlqa3 g.37.1.1 (A:63-92) GLI 22.2 10 0.00073 21.4 0.3 11 218-228 4-14 (30)
8 d1yuja_ g.37.1.1 (A:) GAGA fac 20.9 11 0.00082 23.8 0.3 12 216-227 22-33 (54)
9 d2di4a1 a.269.1.1 (A:406-607) 20.2 71 0.0051 23.7 5.2 55 66-139 140-194 (202)
10 d1emoa2 g.3.11.1 (A:2167-2205) 18.7 14 0.001 22.0 0.4 21 188-208 16-39 (39)
No 1
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.94 E-value=2.8 Score=28.94 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=10.8
Q ss_pred eeeceecccccchh
Q 042910 215 LDIDLTCSICLVSQ 228 (234)
Q Consensus 215 ~~~~ltc~icl~~~ 228 (234)
++-.|+||||++..
T Consensus 19 l~~~l~C~IC~~~~ 32 (97)
T d1jm7b_ 19 LEKLLRCSRCTNIL 32 (97)
T ss_dssp HHHTTSCSSSCSCC
T ss_pred hhhcCCCccCCchh
Confidence 34568999999864
No 2
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.98 E-value=3.1 Score=28.98 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=9.8
Q ss_pred eeceecccccchh
Q 042910 216 DIDLTCSICLVSQ 228 (234)
Q Consensus 216 ~~~ltc~icl~~~ 228 (234)
+=.|+||||++..
T Consensus 19 ~~~l~CpIC~~~~ 31 (103)
T d1jm7a_ 19 QKILECPICLELI 31 (103)
T ss_dssp HHHTSCSSSCCCC
T ss_pred ccCcCCCccCchh
Confidence 3458899999864
No 3
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.63 E-value=4.5 Score=25.66 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=8.6
Q ss_pred eecccccchh
Q 042910 219 LTCSICLVSQ 228 (234)
Q Consensus 219 ltc~icl~~~ 228 (234)
|+|+||++..
T Consensus 7 l~C~IC~~~~ 16 (56)
T d1bora_ 7 LRCQQCQAEA 16 (56)
T ss_dssp SSCSSSCSSC
T ss_pred CCCcccCccc
Confidence 7999999864
No 4
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=32.09 E-value=5.2 Score=25.07 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=9.7
Q ss_pred eeceecccccchh
Q 042910 216 DIDLTCSICLVSQ 228 (234)
Q Consensus 216 ~~~ltc~icl~~~ 228 (234)
|=+.+|+||++..
T Consensus 3 ed~~~C~ICl~~~ 15 (55)
T d1iyma_ 3 DDGVECAVCLAEL 15 (55)
T ss_dssp CCSCCCTTTCCCC
T ss_pred CCCCCCeEECccc
Confidence 4456899999864
No 5
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.16 E-value=7.3 Score=26.80 Aligned_cols=13 Identities=23% Similarity=0.585 Sum_probs=9.9
Q ss_pred eceecccccchhh
Q 042910 217 IDLTCSICLVSQS 229 (234)
Q Consensus 217 ~~ltc~icl~~~~ 229 (234)
-.++|+||++...
T Consensus 22 ~~l~C~IC~~~~~ 34 (86)
T d1rmda2 22 KSISCQICEHILA 34 (86)
T ss_dssp HHTBCTTTCSBCS
T ss_pred cCcCCccCCcchh
Confidence 4579999998653
No 6
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=22.55 E-value=9.3 Score=23.82 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=9.3
Q ss_pred ceecccccchhh
Q 042910 218 DLTCSICLVSQS 229 (234)
Q Consensus 218 ~ltc~icl~~~~ 229 (234)
..+|+||+++.+
T Consensus 6 ~~~C~IC~~~~~ 17 (60)
T d1vyxa_ 6 VPVCWICNEELG 17 (60)
T ss_dssp CCEETTTTEECS
T ss_pred CCCCccCCccCC
Confidence 467999998654
No 7
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.25 E-value=10 Score=21.37 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=8.7
Q ss_pred ceecccccchh
Q 042910 218 DLTCSICLVSQ 228 (234)
Q Consensus 218 ~ltc~icl~~~ 228 (234)
-.|||.|-++.
T Consensus 4 vftcs~cqe~f 14 (30)
T d2dlqa3 4 VFTCSVCQETF 14 (30)
T ss_dssp CEECSSSCCEE
T ss_pred eEEeHHHHHHH
Confidence 36999998874
No 8
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}
Probab=20.88 E-value=11 Score=23.79 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=8.6
Q ss_pred eeceecccccch
Q 042910 216 DIDLTCSICLVS 227 (234)
Q Consensus 216 ~~~ltc~icl~~ 227 (234)
|---|||||-.+
T Consensus 22 ~qpatcpic~av 33 (54)
T d1yuja_ 22 EQPATCPICYAV 33 (54)
T ss_dssp SCCEECTTTCCE
T ss_pred cCCCCCchHHHH
Confidence 345699999765
No 9
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=20.23 E-value=71 Score=23.75 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhcccccchHHHHHhhhhHHHHHHhHHHHHHHHHhhhh
Q 042910 66 PSLLNEMSAIVGCFNERAQKLLELHLASGFSKCLIWFKGKLHGTHGALIQEGKDLVTYALINAIAIRKILKKYD 139 (234)
Q Consensus 66 ~~L~~EieKIngFf~eRl~~Ll~~~~as~~~~~~~~ir~~l~~~~~~l~qeg~~L~nYveLNatG~RKILKK~D 139 (234)
..+++|+.++...--.|...++..|. ..+..-...|...-.|+..-|+.||++|.
T Consensus 140 ~~id~ev~~ll~~a~~~a~~iL~~~~-------------------~~l~~la~~Lle~etL~~~ei~~il~~~~ 194 (202)
T d2di4a1 140 REIDEEVKRIITEQYEKAKAIVEEYK-------------------EPLKAVVKKLLEKETITCEEFVEVFKLYG 194 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTH-------------------HHHHHHHHHHHHHSEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-------------------HHHHHHHHHHHHhCccCHHHHHHHHHHCC
Confidence 34566666666555556666665321 11223334688888999999999999984
No 10
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.70 E-value=14 Score=22.04 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=16.8
Q ss_pred CCccCcceeeecCC---CCeeEEe
Q 042910 188 PAFFEGCYLKFNDD---KPSLSCE 208 (234)
Q Consensus 188 ~~~~~~~~~~~~~~---~~~~~~~ 208 (234)
.+..++|.|...++ .|.|+|+
T Consensus 16 tNviGgFec~C~~GFepgpmm~CE 39 (39)
T d1emoa2 16 KNVIGGFECTCEEGFEPGPMMTCE 39 (39)
T ss_dssp EECSSSEEECCSSSSCCCSSSCCC
T ss_pred eecccceEEeecCCcCCCcceecC
Confidence 45788999998887 6888885
Done!