Query 042911
Match_columns 470
No_of_seqs 248 out of 751
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 10:52:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1411 Aspartate aminotransfe 100.0 8.9E-31 1.9E-35 264.8 2.1 138 330-470 11-187 (427)
2 KOG1412 Aspartate aminotransfe 99.9 5.1E-29 1.1E-33 249.9 2.8 125 343-470 2-167 (410)
3 COG1448 TyrB Aspartate/tyrosin 99.9 2.1E-27 4.6E-32 242.5 1.6 122 346-470 1-161 (396)
4 PLN02397 aspartate transaminas 97.9 1E-05 2.2E-10 83.4 5.0 130 338-469 15-182 (423)
5 PTZ00376 aspartate aminotransf 96.9 0.00053 1.2E-08 69.9 2.2 124 344-469 2-164 (404)
6 PRK09257 aromatic amino acid a 96.8 0.0016 3.4E-08 66.1 5.3 121 347-469 2-160 (396)
7 PRK08637 hypothetical protein; 90.6 0.29 6.3E-06 49.8 4.2 41 428-469 92-133 (388)
8 PLN00143 tyrosine/nicotianamin 81.9 2.2 4.8E-05 44.0 5.1 40 429-468 121-160 (409)
9 KOG0921 Dosage compensation co 81.4 1.8 3.9E-05 50.9 4.5 17 79-95 1072-1088(1282)
10 KOG0921 Dosage compensation co 81.0 2.9 6.3E-05 49.2 5.9 13 109-121 1141-1153(1282)
11 PRK07550 hypothetical protein; 73.8 6.2 0.00013 40.0 5.5 40 428-467 113-152 (386)
12 KOG3973 Uncharacterized conser 71.9 7.3 0.00016 41.6 5.5 14 221-235 447-461 (465)
13 PRK06348 aspartate aminotransf 71.0 7.4 0.00016 39.6 5.3 40 429-468 113-152 (384)
14 TIGR03540 DapC_direct LL-diami 69.9 8 0.00017 39.1 5.2 35 425-459 111-145 (383)
15 PF00155 Aminotran_1_2: Aminot 68.0 4.8 0.0001 39.8 3.2 40 429-468 93-132 (363)
16 PRK08068 transaminase; Reviewe 67.7 9 0.0002 39.0 5.1 37 423-459 112-148 (389)
17 TIGR01264 tyr_amTase_E tyrosin 67.4 8 0.00017 39.5 4.7 41 429-469 119-159 (401)
18 PRK08912 hypothetical protein; 66.8 10 0.00022 38.5 5.2 39 429-468 111-149 (387)
19 PRK09276 LL-diaminopimelate am 63.3 14 0.00029 37.5 5.4 36 425-460 113-148 (385)
20 PRK07366 succinyldiaminopimela 61.5 15 0.00032 37.4 5.3 30 429-458 116-145 (388)
21 TIGR02729 Obg_CgtA Obg family 58.0 12 0.00026 38.6 4.0 36 165-218 11-47 (329)
22 PRK08636 aspartate aminotransf 57.9 20 0.00044 36.8 5.6 32 427-458 117-148 (403)
23 PRK06836 aspartate aminotransf 57.4 19 0.00042 36.8 5.4 39 429-468 120-158 (394)
24 PRK12298 obgE GTPase CgtA; Rev 56.1 12 0.00026 39.6 3.7 36 165-218 13-49 (390)
25 PRK15481 transcriptional regul 55.1 17 0.00038 37.6 4.7 32 427-458 163-194 (431)
26 PRK07681 aspartate aminotransf 54.6 24 0.00052 36.1 5.5 30 429-458 117-146 (399)
27 KOG3915 Transcription regulato 54.6 18 0.0004 40.0 4.8 32 143-174 63-94 (641)
28 PTZ00433 tyrosine aminotransfe 54.2 20 0.00044 37.0 4.9 40 429-468 128-167 (412)
29 PRK02610 histidinol-phosphate 54.0 16 0.00035 37.2 4.1 38 430-468 117-154 (374)
30 PRK09147 succinyldiaminopimela 51.6 25 0.00054 35.9 5.1 39 429-468 117-156 (396)
31 cd01494 AAT_I Aspartate aminot 51.5 28 0.00062 29.5 4.7 33 429-461 41-74 (170)
32 PRK05387 histidinol-phosphate 50.8 21 0.00045 35.5 4.2 30 429-458 101-130 (353)
33 PRK12296 obgE GTPase CgtA; Rev 50.1 17 0.00036 40.2 3.7 36 165-218 14-50 (500)
34 PLN02187 rooty/superroot1 48.5 31 0.00067 36.8 5.3 40 429-468 155-194 (462)
35 PRK07777 aminotransferase; Val 48.1 30 0.00065 35.1 5.0 40 429-468 109-149 (387)
36 PTZ00377 alanine aminotransfer 48.0 28 0.00061 37.0 5.0 30 429-458 163-192 (481)
37 PRK08175 aminotransferase; Val 48.0 33 0.00072 35.1 5.3 32 427-458 113-144 (395)
38 PRK06108 aspartate aminotransf 47.9 35 0.00076 34.2 5.4 31 429-459 108-138 (382)
39 PF04519 Bactofilin: Polymer-f 47.8 1.4E+02 0.003 25.1 8.2 15 127-141 82-96 (101)
40 PLN00145 tyrosine/nicotianamin 46.9 32 0.0007 36.1 5.2 40 429-468 141-180 (430)
41 PLN02656 tyrosine transaminase 46.6 37 0.00081 35.1 5.5 40 429-468 120-159 (409)
42 PRK05764 aspartate aminotransf 46.5 34 0.00074 34.6 5.1 34 426-459 112-145 (393)
43 PRK12297 obgE GTPase CgtA; Rev 46.3 21 0.00046 38.4 3.7 36 165-218 12-48 (424)
44 PRK05942 aspartate aminotransf 45.8 36 0.00077 34.9 5.1 32 427-458 119-150 (394)
45 PRK05957 aspartate aminotransf 45.0 40 0.00087 34.5 5.4 39 429-469 113-151 (389)
46 PRK12414 putative aminotransfe 44.2 38 0.00083 34.5 5.1 39 429-468 114-152 (384)
47 PRK07337 aminotransferase; Val 43.1 41 0.00088 34.2 5.0 41 428-468 113-153 (388)
48 PRK12299 obgE GTPase CgtA; Rev 42.9 24 0.00053 36.5 3.5 36 165-218 12-48 (335)
49 PRK08361 aspartate aminotransf 42.7 46 0.001 33.9 5.4 42 427-468 115-156 (391)
50 PRK09082 methionine aminotrans 42.6 31 0.00067 35.2 4.1 39 429-468 115-153 (386)
51 PRK08363 alanine aminotransfer 42.5 39 0.00084 34.6 4.8 42 426-467 114-155 (398)
52 PLN02368 alanine transaminase 42.4 42 0.00091 35.4 5.2 30 429-458 155-184 (407)
53 COG4907 Predicted membrane pro 42.1 16 0.00035 40.4 2.1 6 227-232 590-595 (595)
54 PTZ00146 fibrillarin; Provisio 42.0 46 0.00099 34.5 5.2 26 257-282 77-111 (293)
55 KOG3973 Uncharacterized conser 40.2 26 0.00057 37.6 3.2 13 199-211 356-370 (465)
56 PRK07392 threonine-phosphate d 39.9 40 0.00087 33.9 4.4 31 429-459 97-127 (360)
57 PRK07309 aromatic amino acid a 39.8 54 0.0012 33.6 5.4 30 429-458 115-144 (391)
58 PLN02231 alanine transaminase 38.6 48 0.001 36.5 5.0 39 429-468 216-255 (534)
59 PLN00175 aminotransferase fami 38.5 48 0.001 34.6 4.8 33 427-459 137-169 (413)
60 PRK06290 aspartate aminotransf 38.2 53 0.0011 34.3 5.1 32 427-458 128-159 (410)
61 TIGR01141 hisC histidinol-phos 37.4 37 0.00081 33.6 3.7 31 429-459 95-125 (346)
62 PRK06958 single-stranded DNA-b 37.0 1.2E+02 0.0025 29.6 6.8 13 124-136 97-109 (182)
63 PRK08960 hypothetical protein; 36.9 65 0.0014 32.8 5.4 30 429-458 116-145 (387)
64 PRK09148 aminotransferase; Val 36.1 62 0.0014 33.4 5.2 31 429-459 116-146 (405)
65 PRK13355 bifunctional HTH-doma 35.7 60 0.0013 35.0 5.2 30 429-458 232-261 (517)
66 PRK08354 putative aminotransfe 35.4 52 0.0011 32.6 4.3 29 429-457 77-105 (311)
67 PRK06358 threonine-phosphate d 34.7 55 0.0012 33.1 4.4 29 430-458 94-122 (354)
68 TIGR03537 DapC succinyldiamino 34.5 68 0.0015 32.2 5.0 29 430-458 88-116 (350)
69 PRK04870 histidinol-phosphate 34.3 47 0.001 33.3 3.9 31 429-459 105-135 (356)
70 PRK03317 histidinol-phosphate 33.5 53 0.0011 33.1 4.1 34 425-458 108-141 (368)
71 PRK07683 aminotransferase A; V 33.2 69 0.0015 32.8 4.9 30 429-458 113-142 (387)
72 PRK03158 histidinol-phosphate 33.1 49 0.0011 33.1 3.7 31 429-459 105-135 (359)
73 PRK05839 hypothetical protein; 33.1 1E+02 0.0022 31.5 6.0 30 429-458 109-138 (374)
74 PRK09105 putative aminotransfe 33.0 58 0.0013 33.4 4.3 31 429-459 119-149 (370)
75 TIGR03538 DapC_gpp succinyldia 32.7 75 0.0016 32.4 5.1 29 430-458 117-145 (393)
76 PRK07590 L,L-diaminopimelate a 32.3 94 0.002 32.1 5.7 29 424-452 117-145 (409)
77 PLN03026 histidinol-phosphate 32.2 55 0.0012 33.6 4.1 30 429-458 127-156 (380)
78 PRK08056 threonine-phosphate d 31.7 72 0.0016 32.2 4.7 30 430-459 95-124 (356)
79 PF01018 GTP1_OBG: GTP1/OBG; 31.6 21 0.00046 33.5 0.9 37 165-218 11-47 (156)
80 PRK06107 aspartate aminotransf 31.3 80 0.0017 32.5 5.0 33 426-458 114-146 (402)
81 TIGR01265 tyr_nico_aTase tyros 30.5 73 0.0016 32.8 4.6 41 429-469 120-160 (403)
82 PRK07682 hypothetical protein; 30.2 88 0.0019 31.6 5.1 30 429-458 105-134 (378)
83 PRK05166 histidinol-phosphate 29.6 64 0.0014 32.7 4.0 31 429-459 112-142 (371)
84 PRK01688 histidinol-phosphate 29.5 67 0.0015 32.5 4.1 29 430-458 100-128 (351)
85 PRK01533 histidinol-phosphate 29.4 65 0.0014 33.0 4.0 30 429-458 105-134 (366)
86 KOG1489 Predicted GTP-binding 29.2 51 0.0011 35.2 3.2 37 165-219 51-88 (366)
87 PRK09677 putative lipopolysacc 29.0 1.4E+02 0.0031 28.1 6.0 64 76-142 33-96 (192)
88 KOG1596 Fibrillarin and relate 28.9 86 0.0019 32.6 4.7 10 266-275 113-122 (317)
89 PRK05664 threonine-phosphate d 28.0 68 0.0015 32.1 3.8 30 429-458 86-115 (330)
90 PRK04781 histidinol-phosphate 27.7 76 0.0016 32.3 4.1 31 430-460 102-132 (364)
91 TIGR03542 DAPAT_plant LL-diami 26.3 1.3E+02 0.0029 30.9 5.6 23 429-451 118-140 (402)
92 PRK07324 transaminase; Validat 25.7 1.1E+02 0.0024 31.3 4.8 30 429-458 104-133 (373)
93 cd00609 AAT_like Aspartate ami 25.6 1.5E+02 0.0032 28.5 5.5 32 429-460 83-114 (350)
94 TIGR01140 L_thr_O3P_dcar L-thr 24.9 90 0.002 31.2 4.0 28 430-457 87-114 (330)
95 PRK07568 aspartate aminotransf 24.9 1.3E+02 0.0028 30.5 5.2 31 429-459 112-142 (397)
96 PRK06225 aspartate aminotransf 23.7 1.4E+02 0.0029 30.4 5.1 32 429-460 107-138 (380)
97 PRK03967 histidinol-phosphate 23.3 98 0.0021 31.1 3.9 30 429-458 94-123 (337)
98 PRK03321 putative aminotransfe 23.2 89 0.0019 31.2 3.6 31 429-459 98-128 (352)
99 PRK09265 aminotransferase AlaT 22.9 1.6E+02 0.0034 30.4 5.4 30 429-458 119-148 (404)
100 PRK14807 histidinol-phosphate 22.6 1.2E+02 0.0027 30.4 4.5 30 429-458 100-129 (351)
101 PRK06207 aspartate aminotransf 22.6 1.5E+02 0.0033 30.7 5.3 30 429-458 126-155 (405)
102 COG1310 Predicted metal-depend 22.1 38 0.00082 30.1 0.7 11 3-13 74-86 (134)
103 PRK14808 histidinol-phosphate 21.7 1.1E+02 0.0023 30.9 3.9 29 430-458 97-125 (335)
104 PRK00950 histidinol-phosphate 21.5 1.2E+02 0.0026 30.2 4.1 29 429-457 111-139 (361)
105 PRK12298 obgE GTPase CgtA; Rev 20.3 1.6E+02 0.0034 31.4 4.9 19 162-180 33-51 (390)
106 PRK14809 histidinol-phosphate 20.2 1.5E+02 0.0033 29.7 4.6 30 429-458 106-135 (357)
No 1
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=99.96 E-value=8.9e-31 Score=264.80 Aligned_cols=138 Identities=28% Similarity=0.449 Sum_probs=125.3
Q ss_pred ccCCCChhhhhhccccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccC-------------CCCCCCCCC
Q 042911 330 LLGPGDGIEAQRLVLSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELL-------------HSPEDCNMN 394 (470)
Q Consensus 330 l~g~Gd~i~aqr~tlSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel-------------~i~eDpsLN 394 (470)
-..++.+..+...+.|||.+||+|||||+- .++++ ++| +|+|+|||+|+||||+. |+.. .++|
T Consensus 11 ~~~~~~~a~~~~~~~s~~s~V~maPpDpIL-GVTeAfk~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~-~~ld 88 (427)
T KOG1411|consen 11 AHRLGLAAAASARASSWWSHVEMAPPDPIL-GVTEAFKKDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLAS-LSLD 88 (427)
T ss_pred hcccchhhhhcccccchhhcCCCCCCCCcc-cHHHHHhcCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhh-hccc
Confidence 345777788889999999999999999533 89999 999 99999999999999943 4444 7899
Q ss_pred Cee-------eeE-----EEeeccceeeccCceeh------------HHHHHHhhccCCCeEEecCCCCCChHHHHhhcC
Q 042911 395 SSL-------SFT-----PQICRVEDIVVDGPVEG------------SVVRFRRARTISRTIYIPQPTWGNHPKVFTLAG 450 (470)
Q Consensus 395 hEY-------sFt-----LlfG~ds~aI~eGRV~g------------gA~FLsR~~tVTVtVyIsdPTW~NH~~IFq~AG 450 (470)
+|| +|. |+||+++++|+++|+.+ +|+||+|+.+ .++||||+|||.||..||+++|
T Consensus 89 KEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~-~~~I~ip~PTWgNh~~if~~ag 167 (427)
T KOG1411|consen 89 KEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYP-SRDIYIPDPTWGNHKNIFKDAG 167 (427)
T ss_pred chhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhcc-ccceeecCCcccccCccccccC
Confidence 999 777 99999999999999988 5999999999 9999999999999999999999
Q ss_pred CeeeeeecccCCCCCccCCC
Q 042911 451 LSVKSYRYYDPATRGLNFHG 470 (470)
Q Consensus 451 f~V~eYpYyD~~T~~LDfdg 470 (470)
++++.|+|||++|+++||++
T Consensus 168 ~~~~~yrYyd~~t~gld~~g 187 (427)
T KOG1411|consen 168 LPVKFYRYYDPKTRGLDFKG 187 (427)
T ss_pred cceeeeeeccccccccchHH
Confidence 99999999999999999975
No 2
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=99.95 E-value=5.1e-29 Score=249.92 Aligned_cols=125 Identities=24% Similarity=0.398 Sum_probs=115.9
Q ss_pred cccccccccccCCCcccc-ccccc-ccC-CCCeeeeccCcccCc-------------cCCCCCCCCCCCee-------ee
Q 042911 343 VLSLFYSIHVRPGSVLCG-PLENA-TTD-AHTKAYCEIQDCPVE-------------LLHSPEDCNMNSSL-------SF 399 (470)
Q Consensus 343 tlSlF~dVp~gP~D~L~~-~L~ka-~~D-~p~KVnLgiGaYRdE-------------el~i~eDpsLNhEY-------sF 399 (470)
.+|+|.+||++|++ ++ .+++. .+| .|.||||++|+||+| +..+++|+++|||| .|
T Consensus 2 ~~s~f~~I~~a~p~--~vf~~~~~y~~d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F 79 (410)
T KOG1412|consen 2 SMSFFANIPVAPPI--EVFKLNASYGEDLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTF 79 (410)
T ss_pred CcchhcCCccCChH--HHHhhHHHhcccCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhh
Confidence 36899999999998 66 88888 999 999999999999999 67888999999999 78
Q ss_pred E-----EEeeccceeeccCceeh------------HHHHHHhhccCCCeEEecCCCCCChHHHHhhcCCe-eeeeecccC
Q 042911 400 T-----PQICRVEDIVVDGPVEG------------SVVRFRRARTISRTIYIPQPTWGNHPKVFTLAGLS-VKSYRYYDP 461 (470)
Q Consensus 400 t-----LlfG~ds~aI~eGRV~g------------gA~FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~-V~eYpYyD~ 461 (470)
+ |+||.++++++|+|+.+ +|+||++|+. ..+||+|+|||+||..||+.+||. |.+|||||.
T Consensus 80 ~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~ 158 (410)
T KOG1412|consen 80 TKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDA 158 (410)
T ss_pred hhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHHHcCCceeeeeeeecC
Confidence 8 99999999999999777 6999999998 788999999999999999999985 999999999
Q ss_pred CCCCccCCC
Q 042911 462 ATRGLNFHG 470 (470)
Q Consensus 462 ~T~~LDfdg 470 (470)
+++++|+++
T Consensus 159 ~~k~~d~e~ 167 (410)
T KOG1412|consen 159 ENKCVDLEG 167 (410)
T ss_pred CCceecHHH
Confidence 999999863
No 3
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.93 E-value=2.1e-27 Score=242.45 Aligned_cols=122 Identities=29% Similarity=0.451 Sum_probs=110.0
Q ss_pred ccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCC-------------CCCCCCCee-------eeE---
Q 042911 346 LFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSP-------------EDCNMNSSL-------SFT--- 400 (470)
Q Consensus 346 lF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~-------------eDpsLNhEY-------sFt--- 400 (470)
+|.+||.+|+||+- .|.++ ++| +|+||||++|+|+||..++| +++ .+++| .|+
T Consensus 1 ~F~~i~~~p~DpIl-gL~e~f~~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~-~~k~Yl~i~G~~~f~~~~ 78 (396)
T COG1448 1 MFEKIEAAPADPIL-GLKEAFKADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE-KTKNYLPIEGLPEFLEAV 78 (396)
T ss_pred CccccccCCCCchh-HHHHHHhcCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccc-cccccCCcCCcHHHHHHH
Confidence 58999999999533 78899 999 99999999999999955554 344 88899 777
Q ss_pred --EEeeccceeeccCceeh------------HHHHHHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCc
Q 042911 401 --PQICRVEDIVVDGPVEG------------SVVRFRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGL 466 (470)
Q Consensus 401 --LlfG~ds~aI~eGRV~g------------gA~FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~L 466 (470)
|+||.+++++.++|+++ +|+||+|+.+ ..+||||+|||+||..||+++||+|.+|||||++++.+
T Consensus 79 ~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~-~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~ 157 (396)
T COG1448 79 QKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFP-DATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGL 157 (396)
T ss_pred HHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCC-CceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccc
Confidence 99999999999999988 5999999998 88899999999999999999999999999999999999
Q ss_pred cCCC
Q 042911 467 NFHG 470 (470)
Q Consensus 467 Dfdg 470 (470)
||++
T Consensus 158 df~~ 161 (396)
T COG1448 158 DFDG 161 (396)
T ss_pred cHHH
Confidence 9974
No 4
>PLN02397 aspartate transaminase
Probab=97.92 E-value=1e-05 Score=83.45 Aligned_cols=130 Identities=30% Similarity=0.452 Sum_probs=85.7
Q ss_pred hhhhccccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCC------------CCCCCCCee------
Q 042911 338 EAQRLVLSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSP------------EDCNMNSSL------ 397 (470)
Q Consensus 338 ~aqr~tlSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~------------eDpsLNhEY------ 397 (470)
+|-...+|+|..++-.|.|++. .+.+. ++| .+.|++|++|.|+++...+. .++..++.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~ 93 (423)
T PLN02397 15 MAAAAASSRFEHVEPAPPDPIL-GVTEAFLADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGL 93 (423)
T ss_pred hhhhhhhhHHHcCCcCCCChHH-HHHHHHhhCCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCC
Confidence 4445678889999999998533 44445 778 99999999999999853321 033445567
Q ss_pred -eeE-----EEeeccceeeccCce------eh-H-----HHHHHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 398 -SFT-----PQICRVEDIVVDGPV------EG-S-----VVRFRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 398 -sFt-----LlfG~ds~aI~eGRV------~g-g-----A~FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
+|+ .+.++....+.+.+| .+ + +.++..+.+ -.+|+|++|+|++|..+++.+|.++..|+++
T Consensus 94 ~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~p-Gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~ 172 (423)
T PLN02397 94 AEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYP-GSTIYIPNPTWGNHHNIFRDAGVPVRTYRYY 172 (423)
T ss_pred HHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCC-CCEEEEeCCCchhHHHHHHHcCCeEEEeecc
Confidence 344 234443222222221 11 1 222333333 4689999999999999999999999999987
Q ss_pred cCCCCCccCC
Q 042911 460 DPATRGLNFH 469 (470)
Q Consensus 460 D~~T~~LDfd 469 (470)
+++..++|++
T Consensus 173 ~~~~~~~d~~ 182 (423)
T PLN02397 173 DPKTRGLDFD 182 (423)
T ss_pred cCcCCccCHH
Confidence 6555667764
No 5
>PTZ00376 aspartate aminotransferase; Provisional
Probab=96.86 E-value=0.00053 Score=69.92 Aligned_cols=124 Identities=31% Similarity=0.517 Sum_probs=76.2
Q ss_pred ccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCcc-------------CCCCCCCCCCCee-------eeE-
Q 042911 344 LSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVEL-------------LHSPEDCNMNSSL-------SFT- 400 (470)
Q Consensus 344 lSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEe-------------l~i~eDpsLNhEY-------sFt- 400 (470)
-|+|+.++..+.+++. .+.+. +++ .++++||++|.++++. .++.+ +...+.| +|+
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~Y~~~~G~~~lR~ 79 (404)
T PTZ00376 2 DSLFSQVPLGPPDPIL-GLAAAFKADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAE-KNLDKEYLPIEGLQSFIE 79 (404)
T ss_pred chhhhcCCcCCCChHH-HHHHHHhhcCCcccEecccceeECCCCCEehhhHHHHHHHHhcc-ccCCCCCCCCCCCHHHHH
Confidence 3679999888877432 34444 666 7899999999976441 01111 2222455 333
Q ss_pred ----EEeeccceeeccCcee---h----HHHHH-----HhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCC
Q 042911 401 ----PQICRVEDIVVDGPVE---G----SVVRF-----RRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATR 464 (470)
Q Consensus 401 ----LlfG~ds~aI~eGRV~---g----gA~FL-----sR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~ 464 (470)
.+.++....+...+|. + +|.++ +.+...-.+|.+++|+|.++..+++.+|.++..|++++.++.
T Consensus 80 aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~ 159 (404)
T PTZ00376 80 AAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTK 159 (404)
T ss_pred HHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccC
Confidence 2233321111222232 1 23322 233333578999999999999999999999999999776566
Q ss_pred CccCC
Q 042911 465 GLNFH 469 (470)
Q Consensus 465 ~LDfd 469 (470)
++|++
T Consensus 160 ~~d~~ 164 (404)
T PTZ00376 160 GLDFD 164 (404)
T ss_pred CcCHH
Confidence 77764
No 6
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=96.82 E-value=0.0016 Score=66.09 Aligned_cols=121 Identities=26% Similarity=0.436 Sum_probs=73.3
Q ss_pred cccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCC-------------CCCCCCCee-------eeE----
Q 042911 347 FYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSP-------------EDCNMNSSL-------SFT---- 400 (470)
Q Consensus 347 F~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~-------------eDpsLNhEY-------sFt---- 400 (470)
|..++..|++++. .+.+. +.+ .+++++|++|.++++...+| +++ .+.+| +|+
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~-~~~~Y~~~~G~~~lR~aia 79 (396)
T PRK09257 2 FEHLEAAPADPIL-GLMEAFRADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETE-TTKNYLPIEGLAAYRQAVQ 79 (396)
T ss_pred cccCCCCCCChHH-HHHHHHhhCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccc-cCCCcCCCCCCHHHHHHHH
Confidence 7778888887542 34444 666 78999999999865422222 222 23456 333
Q ss_pred -EEeeccceeeccCce---eh----HHHHHH-hhc---cCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 401 -PQICRVEDIVVDGPV---EG----SVVRFR-RAR---TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 401 -LlfG~ds~aI~eGRV---~g----gA~FLs-R~~---tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
.+..+....+...+| .+ .|.++. +.. ..-.+|++++|+|.++..+++.+|+++..|++.+++..++|+
T Consensus 80 ~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~ 159 (396)
T PRK09257 80 ELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDF 159 (396)
T ss_pred HHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCH
Confidence 222322111122222 11 133322 212 224689999999999999999999999999987765556765
Q ss_pred C
Q 042911 469 H 469 (470)
Q Consensus 469 d 469 (470)
+
T Consensus 160 ~ 160 (396)
T PRK09257 160 D 160 (396)
T ss_pred H
Confidence 4
No 7
>PRK08637 hypothetical protein; Provisional
Probab=90.61 E-value=0.29 Score=49.80 Aligned_cols=41 Identities=24% Similarity=0.577 Sum_probs=31.8
Q ss_pred CCCeEEecCCCCCChHHHHh-hcCCeeeeeecccCCCCCccCC
Q 042911 428 ISRTIYIPQPTWGNHPKVFT-LAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 428 VTVtVyIsdPTW~NH~~IFq-~AGf~V~eYpYyD~~T~~LDfd 469 (470)
...+|.+++|+|+++..++. ..|.++..|++.+. ..++|++
T Consensus 92 ~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~ 133 (388)
T PRK08637 92 QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTD 133 (388)
T ss_pred CCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHH
Confidence 34679999999999999886 57999999998532 3456653
No 8
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=81.90 E-value=2.2 Score=44.03 Aligned_cols=40 Identities=10% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-..|++++|+|.++..+++..|.++..++.-+.+.-.+|+
T Consensus 121 gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 160 (409)
T PLN00143 121 EANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDL 160 (409)
T ss_pred CCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCH
Confidence 4689999999999999999999998888763222334554
No 9
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=81.36 E-value=1.8 Score=50.85 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=8.0
Q ss_pred eEEEccceEEEccCcEE
Q 042911 79 VYISGKGNFEILTGVKF 95 (470)
Q Consensus 79 ~~i~g~g~l~i~~~v~l 95 (470)
|--.|.|-+.+.+=.+|
T Consensus 1072 Vqsdgq~IV~VDdWIkl 1088 (1282)
T KOG0921|consen 1072 VQSDGQGIVRVDDWIKL 1088 (1282)
T ss_pred ccccCcceEEeeceeeE
Confidence 44445554445444444
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=80.96 E-value=2.9 Score=49.22 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=7.0
Q ss_pred eecEEEeeceeEE
Q 042911 109 SGNFSLAVNSSIV 121 (470)
Q Consensus 109 Sg~ftL~~~~~iv 121 (470)
-.+|.|+|..++.
T Consensus 1141 Aa~inLmig~~l~ 1153 (1282)
T KOG0921|consen 1141 AADINLMIGDSLL 1153 (1282)
T ss_pred cccccceeccCcc
Confidence 3566666654433
No 11
>PRK07550 hypothetical protein; Provisional
Probab=73.82 E-value=6.2 Score=39.99 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=31.8
Q ss_pred CCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCcc
Q 042911 428 ISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLN 467 (470)
Q Consensus 428 VTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LD 467 (470)
.-.+|.+++|+|.+|..+++..|.++..|++.+.....+|
T Consensus 113 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 152 (386)
T PRK07550 113 AGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPD 152 (386)
T ss_pred CCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCC
Confidence 3567999999999999999999999999987533333334
No 12
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=71.88 E-value=7.3 Score=41.61 Aligned_cols=14 Identities=14% Similarity=-0.111 Sum_probs=8.0
Q ss_pred eccccccCCCce-eee
Q 042911 221 VESRWTLEGGGF-HLS 235 (470)
Q Consensus 221 gg~g~~gggggr-~~~ 235 (470)
||.|+||| ||| +|.
T Consensus 447 ggrgrggg-ggrg~y~ 461 (465)
T KOG3973|consen 447 GGRGRGGG-GGRGGYR 461 (465)
T ss_pred CCCCCCCC-CCCcccC
Confidence 45555544 788 653
No 13
>PRK06348 aspartate aminotransferase; Provisional
Probab=70.97 E-value=7.4 Score=39.61 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=32.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|.++..+++.+|.++..|+..+.+...+|+
T Consensus 113 gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 152 (384)
T PRK06348 113 GDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINV 152 (384)
T ss_pred CCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCH
Confidence 4689999999999999999999998888775544434554
No 14
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=69.88 E-value=8 Score=39.09 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=30.1
Q ss_pred hccCCCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 425 ARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 425 ~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
+...-.+|.+++|+|.++..+++..|.++..|+..
T Consensus 111 ~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~ 145 (383)
T TIGR03540 111 FVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLK 145 (383)
T ss_pred hCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecC
Confidence 33435679999999999999999999999999874
No 15
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=68.02 E-value=4.8 Score=39.81 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=34.0
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
..+|++++|+|.++..+++..|+++..|++.......+|+
T Consensus 93 ~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 132 (363)
T PF00155_consen 93 GDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDP 132 (363)
T ss_dssp TSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETH
T ss_pred cccceecCCccccccccccccCceeeeccccccccccccc
Confidence 5679999999999999999999999999976555555554
No 16
>PRK08068 transaminase; Reviewed
Probab=67.70 E-value=9 Score=38.97 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=30.8
Q ss_pred HhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 423 RRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 423 sR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
+.+...-.+|.+++|+|.++...++.+|.++..++..
T Consensus 112 ~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 148 (389)
T PRK08068 112 QCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLI 148 (389)
T ss_pred HHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecc
Confidence 3333445789999999999999999999999999873
No 17
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=67.37 E-value=8 Score=39.51 Aligned_cols=41 Identities=17% Similarity=0.369 Sum_probs=33.0
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
-.+|++++|+|.++..+++..|.++..++....++.++|++
T Consensus 119 gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~ 159 (401)
T TIGR01264 119 GQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLK 159 (401)
T ss_pred CCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHH
Confidence 46799999999999999999999999888744334556643
No 18
>PRK08912 hypothetical protein; Provisional
Probab=66.84 E-value=10 Score=38.54 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=31.4
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
..+|.+++|+|.++..+++.+|.++..+++ ++++..+|+
T Consensus 111 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 149 (387)
T PRK08912 111 GDEVVLFQPLYDAYLPLIRRAGGVPRLVRL-EPPHWRLPR 149 (387)
T ss_pred CCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccCcCCH
Confidence 568999999999999999999999988886 333344543
No 19
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=63.29 E-value=14 Score=37.50 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=30.3
Q ss_pred hccCCCeEEecCCCCCChHHHHhhcCCeeeeeeccc
Q 042911 425 ARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYD 460 (470)
Q Consensus 425 ~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD 460 (470)
+...-.+|.+++|+|.++..+++..|.++..++..+
T Consensus 113 ~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~ 148 (385)
T PRK09276 113 FVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKE 148 (385)
T ss_pred hCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCC
Confidence 344456899999999999999999999999988743
No 20
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=61.49 E-value=15 Score=37.38 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=27.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|++++|+|.++..+++.+|.++..++.
T Consensus 116 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 145 (388)
T PRK07366 116 GDFALLLDPGYPSHAGGVYLAGGQIYPMPL 145 (388)
T ss_pred CCEEEEcCCCCcchHHHHHhcCCEEEEEEC
Confidence 567999999999999999999999999987
No 21
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=58.05 E-value=12 Score=38.60 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=24.6
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCC-CCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGV-EEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~-~ggggsggsi~~~a 218 (470)
||+||.|...+..++..| .| |. .|=||.||+||++|
T Consensus 11 ~g~gg~g~~~f~r~~~~~---~g---------------gp~gg~gg~gg~v~~~~ 47 (329)
T TIGR02729 11 AGDGGNGCVSFRREKYVP---KG---------------GPDGGDGGRGGSVILEA 47 (329)
T ss_pred ecCCCCceeeEEeecccc---CC---------------CCCCCCCCCCCEEEEEE
Confidence 688888888876554421 11 12 35588999999998
No 22
>PRK08636 aspartate aminotransferase; Provisional
Probab=57.85 E-value=20 Score=36.81 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=28.5
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
..-.+|.+++|+|.++..+++..|.++..++.
T Consensus 117 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 148 (403)
T PRK08636 117 NPGDVAIVPDPAYPIHSQAFILAGGNVHKMPL 148 (403)
T ss_pred CCCCEEEEcCCCCcchHHHHHhcCCEEEEEec
Confidence 33578999999999999999999999988875
No 23
>PRK06836 aspartate aminotransferase; Provisional
Probab=57.41 E-value=19 Score=36.84 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=31.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-..|++++|+|..|..+++..|.++..++. |+++..+|+
T Consensus 120 gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~ 158 (394)
T PRK06836 120 GDEVIVFAPYFVEYRFYVDNHGGKLVVVPT-DTDTFQPDL 158 (394)
T ss_pred CCEEEEcCCCCccHHHHHHHcCCEEEEEec-CCccCcCCH
Confidence 467999999999999999999999999875 444445654
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=56.06 E-value=12 Score=39.56 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCC-CCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGV-EEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~-~ggggsggsi~~~a 218 (470)
||+||.|...+..++..| -| |. .|=||.||+||++|
T Consensus 13 ~G~GG~g~~~f~r~~~~~---~g---------------gp~gg~GG~Gg~v~~~~ 49 (390)
T PRK12298 13 AGDGGNGCVSFRREKYIP---KG---------------GPDGGDGGDGGDVYLEA 49 (390)
T ss_pred ecCCCCceeeEehhhccc---CC---------------CCCCCCCCCCCEEEEEE
Confidence 678888877776544311 01 22 34588899999888
No 25
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=55.14 E-value=17 Score=37.61 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=28.6
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
..-.+|++++|+|.++..+++.+|.++..++.
T Consensus 163 ~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 194 (431)
T PRK15481 163 LPGDSVAVEDPCFLSSINMLRYAGFSASPVSV 194 (431)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHcCCeEEeecc
Confidence 33568999999999999999999999999886
No 26
>PRK07681 aspartate aminotransferase; Provisional
Probab=54.60 E-value=24 Score=36.12 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=27.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|+++..+++..|.++..|+.
T Consensus 117 Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 146 (399)
T PRK07681 117 GDIILVPDPGYTAYETGIQMAGATSYYMPL 146 (399)
T ss_pred CCEEEECCCCccchHHHHHhcCCEEEEEec
Confidence 467999999999999999999999999986
No 27
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=54.59 E-value=18 Score=39.95 Aligned_cols=32 Identities=38% Similarity=0.671 Sum_probs=20.5
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcee
Q 042911 143 TGLAGDPPPQTSGTPQGIEGGSGGHGGRGACC 174 (470)
Q Consensus 143 tgLgg~pp~gtsg~p~g~~G~GGGHGGrGa~c 174 (470)
++=|+.++--.++..+.+.|++++|||+|-+|
T Consensus 63 ~~~g~~g~~s~~g~~s~~~gg~~~~~g~gssc 94 (641)
T KOG3915|consen 63 TGGGGGGGGSGGGGGSSGNGGGGGGGGGGSSC 94 (641)
T ss_pred ccCCCCCCCCCCCccccCCCCCCCCCCCcccc
Confidence 44444433333444455778888999999999
No 28
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=54.23 E-value=20 Score=37.01 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=31.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|.++..+++..|.++..++.-..+...+|+
T Consensus 128 gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~ 167 (412)
T PTZ00433 128 GDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADL 167 (412)
T ss_pred CCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCH
Confidence 4679999999999999999999999888763222334554
No 29
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=54.00 E-value=16 Score=37.15 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=30.9
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
.+|.+++|+|.++..+++..|.++..++. +.++-++|+
T Consensus 117 ~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~ 154 (374)
T PRK02610 117 GSILVAEPTFSMYGILAQTLGIPVVRVGR-DPETFEIDL 154 (374)
T ss_pred CeEEEcCCChHHHHHHHHHcCCEEEEecC-CcccCCCCH
Confidence 37999999999999999999999988874 443445554
No 30
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=51.63 E-value=25 Score=35.89 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCC-CCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPAT-RGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T-~~LDf 468 (470)
...|.+++|+|.++..+++..|.++..+|. ++++ -.+|+
T Consensus 117 gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~-~~~~~~~~d~ 156 (396)
T PRK09147 117 GPLVVCPNPFYQIYEGAALLAGAEPYFLNC-DPANNFAPDF 156 (396)
T ss_pred CCEEEEcCCCccchHHHHHhcCCEEEEecc-CccccCccCH
Confidence 457999999999999999999999998886 3332 24554
No 31
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=51.50 E-value=28 Score=29.53 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=28.2
Q ss_pred CCeEEecCCCCCChH-HHHhhcCCeeeeeecccC
Q 042911 429 SRTIYIPQPTWGNHP-KVFTLAGLSVKSYRYYDP 461 (470)
Q Consensus 429 TVtVyIsdPTW~NH~-~IFq~AGf~V~eYpYyD~ 461 (470)
..+|++++|+|..+. .+++..|.+++.++..+.
T Consensus 41 ~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 74 (170)
T cd01494 41 GDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDA 74 (170)
T ss_pred CCEEEEeecccceehhhHHHhcCCEEEEeccCCC
Confidence 568999999999988 899999999998876543
No 32
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=50.75 E-value=21 Score=35.50 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=27.4
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-..|.+++|+|+++...++..|.++..+++
T Consensus 101 gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 130 (353)
T PRK05387 101 DRPLLFPDITYSFYPVYAGLYGIPYEEIPL 130 (353)
T ss_pred CCEEEEeCCCHHHHHHHHHHcCCEEEEeec
Confidence 467999999999999999999999998886
No 33
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=50.06 E-value=17 Score=40.18 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=24.9
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCC-CCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGV-EEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~-~ggggsggsi~~~a 218 (470)
||+||.|..++..++..| -| |. .|=||-||+||+.|
T Consensus 14 aG~GG~G~~sf~rek~~~---~g---------------gpdGG~GG~GG~v~~~~ 50 (500)
T PRK12296 14 AGDGGNGCASVHREKFKP---LG---------------GPDGGNGGRGGSVVLVV 50 (500)
T ss_pred ecCCCCcceeeehhhccc---CC---------------CCCCCCCCCCCEEEEEE
Confidence 688888888876544411 11 22 35589999999999
No 34
>PLN02187 rooty/superroot1
Probab=48.47 E-value=31 Score=36.83 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=32.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|+.+..+++..|.++..|+....+.-.+|+
T Consensus 155 Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~ 194 (462)
T PLN02187 155 NANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDL 194 (462)
T ss_pred CCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCH
Confidence 4679999999999999999999999999874333445554
No 35
>PRK07777 aminotransferase; Validated
Probab=48.08 E-value=30 Score=35.14 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=32.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCC-CCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPA-TRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~-T~~LDf 468 (470)
-.+|++++|+|..+..+++.+|.++..+++.+.. +..+|+
T Consensus 109 gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 149 (387)
T PRK07777 109 GDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDL 149 (387)
T ss_pred CCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCH
Confidence 4579999999999999999999999999886542 344554
No 36
>PTZ00377 alanine aminotransferase; Provisional
Probab=48.00 E-value=28 Score=36.98 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=27.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-..|++++|+|.++..+++.+|.++..++.
T Consensus 163 gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 163 SDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred CCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 467999999999999999999999888865
No 37
>PRK08175 aminotransferase; Validated
Probab=47.97 E-value=33 Score=35.09 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.2
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
.--.+|++++|+|.+|..+++..|.++..|++
T Consensus 113 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 144 (395)
T PRK08175 113 DHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL 144 (395)
T ss_pred CCCCEEEEcCCCCcchHHHHHHcCCeEEEEec
Confidence 33568999999999999999999999888876
No 38
>PRK06108 aspartate aminotransferase; Provisional
Probab=47.94 E-value=35 Score=34.20 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=28.1
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
..+|.+++|+|.++..+++.+|.++..+++-
T Consensus 108 gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 138 (382)
T PRK06108 108 GDEVVAVTPLWPNLVAAPKILGARVVCVPLD 138 (382)
T ss_pred CCEEEEeCCCccchHHHHHHCCCEEEEeeCC
Confidence 4579999999999999999999999998884
No 39
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=47.77 E-value=1.4e+02 Score=25.15 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=9.8
Q ss_pred EEEEEEEEcCCceEe
Q 042911 127 LVAQNASFLNGSAVN 141 (470)
Q Consensus 127 ~~A~nvtv~~~g~Is 141 (470)
++|..+.|..+..|+
T Consensus 82 i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 82 ITAGKLEVEGGASIN 96 (101)
T ss_pred EEECEEEEeCCCEEE
Confidence 466667777766665
No 40
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=46.91 E-value=32 Score=36.12 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|.+++|+|.+|..+....|.++..|++...++-.+|+
T Consensus 141 Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~ 180 (430)
T PLN00145 141 GANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDL 180 (430)
T ss_pred CCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCH
Confidence 4579999999999999999999999988864333344554
No 41
>PLN02656 tyrosine transaminase
Probab=46.58 E-value=37 Score=35.09 Aligned_cols=40 Identities=13% Similarity=0.196 Sum_probs=31.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|.+++|+|+++..+.+..|.++..++....+...+|+
T Consensus 120 gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~ 159 (409)
T PLN02656 120 GANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDL 159 (409)
T ss_pred CCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCH
Confidence 4679999999999999999999999998874333334554
No 42
>PRK05764 aspartate aminotransferase; Provisional
Probab=46.54 E-value=34 Score=34.60 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=29.3
Q ss_pred ccCCCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 426 RTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 426 ~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
.+...+|++++|+|..+..+++..|.++..|+..
T Consensus 112 ~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 145 (393)
T PRK05764 112 LDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTG 145 (393)
T ss_pred cCCCCEEEecCCCCcchHHHHHHcCCEEEEEecC
Confidence 3335689999999999999999999999998874
No 43
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=46.34 E-value=21 Score=38.40 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCC-CCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGV-EEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~-~ggggsggsi~~~a 218 (470)
||+||.|...+..++..| .| |. .|=||-||+||++|
T Consensus 12 aG~GG~G~~sf~rek~~~---~g---------------gp~gG~GG~GG~v~~~~ 48 (424)
T PRK12297 12 AGDGGDGMVSFRREKYVP---KG---------------GPDGGDGGKGGSVIFVA 48 (424)
T ss_pred ecCCCCceeeEEhhhccc---CC---------------CCCCCCCCCCCEEEEEE
Confidence 678888888876544411 11 22 34488999999998
No 44
>PRK05942 aspartate aminotransferase; Provisional
Probab=45.78 E-value=36 Score=34.85 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=27.8
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
.--.+|++++|+|.++..+++..|.++..++.
T Consensus 119 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 150 (394)
T PRK05942 119 NPGDVVLVPSPAYPAHFRGPLIAGAQIYPIIL 150 (394)
T ss_pred CCCCEEEEcCCCCcchHHHHHHcCCEEEEeec
Confidence 33568999999999999999999999888876
No 45
>PRK05957 aspartate aminotransferase; Provisional
Probab=45.00 E-value=40 Score=34.47 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=30.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
-.+|.+++|+|.+|...++..|+++..++. + +...+|++
T Consensus 113 gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~ 151 (389)
T PRK05957 113 GDEIILNTPYYFNHEMAITMAGCQPILVPT-D-DNYQLQPE 151 (389)
T ss_pred CCEEEEeCCCCcCHHHHHHhcCCEEEEeec-C-CCCCcCHH
Confidence 567999999999999999999999888865 2 23345543
No 46
>PRK12414 putative aminotransferase; Provisional
Probab=44.22 E-value=38 Score=34.55 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|.++..+++.+|.++..++. +.++..+|+
T Consensus 114 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~d~ 152 (384)
T PRK12414 114 GDEVIYFEPSFDSYAPIVRLQGATPVAIKL-SPEDFRVNW 152 (384)
T ss_pred CCEEEEeCCCccchHHHHHHcCCEEEEEec-CccccccCH
Confidence 467999999999999999999999888875 433444554
No 47
>PRK07337 aminotransferase; Validated
Probab=43.08 E-value=41 Score=34.21 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=31.3
Q ss_pred CCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 428 ISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 428 VTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
.-.+|++++|+|.++..+++..|.++..++.-...+..+|+
T Consensus 113 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 153 (388)
T PRK07337 113 RGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTA 153 (388)
T ss_pred CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCH
Confidence 35679999999999999999999998888762222335554
No 48
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=42.85 E-value=24 Score=36.52 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=23.3
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCC-CCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGV-EEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~-~ggggsggsi~~~a 218 (470)
||+||.|..++..++..| .| |. .|=||-||+||++|
T Consensus 12 ~g~gg~g~~~f~r~~~~~---~g---------------gp~gg~gg~gg~v~~~~ 48 (335)
T PRK12299 12 AGDGGNGCVSFRREKFIP---FG---------------GPDGGDGGRGGSVILEA 48 (335)
T ss_pred ecCCCCceeeEehhhccc---CC---------------CCCCCCCCCCCEEEEEE
Confidence 577888887776544411 11 22 34588899999988
No 49
>PRK08361 aspartate aminotransferase; Provisional
Probab=42.73 E-value=46 Score=33.93 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=32.3
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
....+|.+++|+|..+..+++..|.++..++.-+..+..+|+
T Consensus 115 ~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 156 (391)
T PRK08361 115 EEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDP 156 (391)
T ss_pred CCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCH
Confidence 335689999999999999999999999998873322334554
No 50
>PRK09082 methionine aminotransferase; Validated
Probab=42.62 E-value=31 Score=35.18 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|.++..+++.+|.++..++. +.++..+|+
T Consensus 115 gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~d~ 153 (386)
T PRK09082 115 GDEVIVFDPSYDSYAPAIELAGGRAVRVAL-QPPDFRVDW 153 (386)
T ss_pred CCEEEEeCCCchhhHHHHHHcCCEEEEEec-CcccccCCH
Confidence 468999999999999999999999988876 333445554
No 51
>PRK08363 alanine aminotransferase; Validated
Probab=42.49 E-value=39 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=31.3
Q ss_pred ccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCcc
Q 042911 426 RTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLN 467 (470)
Q Consensus 426 ~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LD 467 (470)
...-.+|++++|+|..+..+++..|.++..|+..+.+...+|
T Consensus 114 ~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d 155 (398)
T PRK08363 114 LDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPD 155 (398)
T ss_pred CCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCC
Confidence 334568999999999999999999988877744444433344
No 52
>PLN02368 alanine transaminase
Probab=42.43 E-value=42 Score=35.40 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=27.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.|++|+|..+..+++.+|.++..++.
T Consensus 155 Gd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~ 184 (407)
T PLN02368 155 KDGVLVPVPQYPLYSATISLLGGTLVPYYL 184 (407)
T ss_pred CCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 467999999999999999999999888875
No 53
>COG4907 Predicted membrane protein [Function unknown]
Probab=42.07 E-value=16 Score=40.36 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=2.6
Q ss_pred cCCCce
Q 042911 227 LEGGGF 232 (470)
Q Consensus 227 gggggr 232 (470)
||||+|
T Consensus 590 GGGGar 595 (595)
T COG4907 590 GGGGAR 595 (595)
T ss_pred CCCCCC
Confidence 334444
No 54
>PTZ00146 fibrillarin; Provisional
Probab=41.99 E-value=46 Score=34.51 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=17.3
Q ss_pred cccchhhh-hhhhhhhheeee--------eeeeec
Q 042911 257 LLNSIEFC-KIVYGALCITVK--------IFLMWN 282 (470)
Q Consensus 257 ~lm~~s~~-~~v~gal~~~vk--------~~lm~n 282 (470)
|+..|.+- +.|||--|+.+. -+=.||
T Consensus 77 l~t~n~~pg~~vygek~~~~~~~~~~~~~eyR~w~ 111 (293)
T PTZ00146 77 LVTKNMVPGESVYGEKRISVEDAEGGEKIEYRVWN 111 (293)
T ss_pred eEeecCCCCcccccceEEeeccCCCCCcceeeeeC
Confidence 44444443 479998888877 366776
No 55
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=40.25 E-value=26 Score=37.61 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=7.6
Q ss_pred cCCCCCCCC--CCCC
Q 042911 199 LGVMGVEEG--PPAR 211 (470)
Q Consensus 199 ~gs~g~~gg--ggsg 211 (470)
.||+|..|| ||-|
T Consensus 356 gg~Rgg~Gg~~gGrG 370 (465)
T KOG3973|consen 356 GGSRGGSGGNWGGRG 370 (465)
T ss_pred cCCCCCCCCCCCCCC
Confidence 667766665 4443
No 56
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=39.88 E-value=40 Score=33.94 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=27.7
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
..+|.+++|+|.++..+++..|.++..++..
T Consensus 97 g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 127 (360)
T PRK07392 97 LRAVYLITPAFGDYRRALRAFGATVKELPLP 127 (360)
T ss_pred CCeEEEECCCcHHHHHHHHHcCCeEEEEecc
Confidence 3589999999999999999999999888763
No 57
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=39.78 E-value=54 Score=33.55 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=26.7
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
..+|++++|+|.++..+++..|.++..++-
T Consensus 115 gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 144 (391)
T PRK07309 115 GDKVLLPAPAYPGYEPIVNLVGAEIVEIDT 144 (391)
T ss_pred CCEEEEeCCCCcchHHHHHHcCCEEEEEec
Confidence 568999999999999999999999887763
No 58
>PLN02231 alanine transaminase
Probab=38.57 E-value=48 Score=36.47 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCC-CCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPAT-RGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T-~~LDf 468 (470)
-..|.|++|+|.+|...++..|.++..|+. |+++ -++|+
T Consensus 216 gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l-~~~~~~~~d~ 255 (534)
T PLN02231 216 KDGILCPIPQYPLYSASIALHGGTLVPYYL-DEATGWGLEI 255 (534)
T ss_pred CCEEEEeCCCChhHHHHHHHcCCEEEEEec-CcccCCCCCH
Confidence 467999999999999999999999888854 4432 35554
No 59
>PLN00175 aminotransferase family protein; Provisional
Probab=38.50 E-value=48 Score=34.56 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=29.0
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
..-.+|++++|+|.++..+++.+|.++..++..
T Consensus 137 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 169 (413)
T PLN00175 137 NPGDEVILFAPFYDSYEATLSMAGAKIKTVTLR 169 (413)
T ss_pred CCCCEEEEeCCCchhHHHHHHHcCCEEEEEECC
Confidence 335689999999999999999999999988874
No 60
>PRK06290 aspartate aminotransferase; Provisional
Probab=38.17 E-value=53 Score=34.34 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=28.5
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
..-.+|.+++|+|..+..+++..|.++..|+.
T Consensus 128 ~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 128 NPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred CCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 33567999999999999999999999999986
No 61
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=37.38 E-value=37 Score=33.58 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|++++|+|+.|..+.+..|.++..++..
T Consensus 95 gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~ 125 (346)
T TIGR01141 95 GDAVLVPPPTYSMYEISAKIHGAEVVKVPLD 125 (346)
T ss_pred CCEEEEcCCCHHHHHHHHHHcCCeEEEeccC
Confidence 4689999999999999999999999988763
No 62
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=37.03 E-value=1.2e+02 Score=29.57 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=8.2
Q ss_pred EEEEEEEEEEEcC
Q 042911 124 TFELVAQNASFLN 136 (470)
Q Consensus 124 sv~~~A~nvtv~~ 136 (470)
++.|.|.+|.+..
T Consensus 97 ~~eVvA~~V~fL~ 109 (182)
T PRK06958 97 STEIVADQMQMLG 109 (182)
T ss_pred EEEEEEeEEEECC
Confidence 3446777777743
No 63
>PRK08960 hypothetical protein; Provisional
Probab=36.94 E-value=65 Score=32.83 Aligned_cols=30 Identities=7% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|+++..+++..|.++..++.
T Consensus 116 gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~ 145 (387)
T PRK08960 116 GKHWLLADPGYPCNRHFLRLVEGAAQLVPV 145 (387)
T ss_pred CCEEEEcCCCCcchHHHHHhcCCeEEEEec
Confidence 568999999999999999999999888875
No 64
>PRK09148 aminotransferase; Validated
Probab=36.14 E-value=62 Score=33.43 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|.++..+++..|.++..++.-
T Consensus 116 gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~ 146 (405)
T PRK09148 116 GDVILCPNPSYPIHAFGFIMAGGVIRSVPAE 146 (405)
T ss_pred CCEEEEcCCCCcccHHHHHhcCCEEEEEeCC
Confidence 4689999999999999999999999888763
No 65
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=35.73 E-value=60 Score=34.96 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.|++|+|..+..+++.+|.++..|+.
T Consensus 232 Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~ 261 (517)
T PRK13355 232 GDEVLIPSPDYPLWTACVNLAGGTAVHYRC 261 (517)
T ss_pred CCEEEEcCCCCcCHHHHHHHCCCEEEEeec
Confidence 468999999999999999999999888764
No 66
>PRK08354 putative aminotransferase; Provisional
Probab=35.42 E-value=52 Score=32.61 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.7
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeee
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYR 457 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYp 457 (470)
-.+|.+++|+|.++..+++.+|.++.+++
T Consensus 77 gd~vlv~~P~y~~~~~~~~~~g~~~~~~~ 105 (311)
T PRK08354 77 DRKVIIPRHTYGEYERVARFFAARIIKGP 105 (311)
T ss_pred CCeEEEeCCCcHHHHHHHHHcCCEEeecC
Confidence 56899999999999999999999987653
No 67
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=34.67 E-value=55 Score=33.12 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=26.8
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
.+|+|++|+|.++..+++..|.++..++.
T Consensus 94 ~~v~i~~P~y~~~~~~~~~~g~~~~~~~~ 122 (354)
T PRK06358 94 KKVLILAPTFAEYERALKAFDAEIEYAEL 122 (354)
T ss_pred CcEEEecCChHHHHHHHHHcCCeeEEEeC
Confidence 58999999999999999999999988876
No 68
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=34.48 E-value=68 Score=32.19 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=27.1
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
.+|.+++|+|..+...++..|.++..|+.
T Consensus 88 d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~ 116 (350)
T TIGR03537 88 RRVIFGTPGYPVYERGALFAGGEPTAVKL 116 (350)
T ss_pred ceEEEcCCCCcchHHHHHhcCCEEEEccc
Confidence 48999999999999999999999999876
No 69
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=34.27 E-value=47 Score=33.26 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=27.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|.++..+++..|.++..++.-
T Consensus 105 gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 135 (356)
T PRK04870 105 GATVLAPEPGFVMYRMSAKLAGLEFVGVPLT 135 (356)
T ss_pred CCEEEECCCCHHHHHHHHHHcCCEEEEecCC
Confidence 4679999999999999999999999998863
No 70
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=33.47 E-value=53 Score=33.15 Aligned_cols=34 Identities=15% Similarity=-0.033 Sum_probs=27.8
Q ss_pred hccCCCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 425 ARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 425 ~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
+...-..|.+++|+|.++..+++..|.++..++.
T Consensus 108 ~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~ 141 (368)
T PRK03317 108 FGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPR 141 (368)
T ss_pred hcCCCCEEEEeCCChHHHHHHHHhcCCeeEEccc
Confidence 3333567999999999999999999988877765
No 71
>PRK07683 aminotransferase A; Validated
Probab=33.18 E-value=69 Score=32.79 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|++++|+|.+|..+++..|.++..|+.
T Consensus 113 gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~ 142 (387)
T PRK07683 113 GTEVILPAPIYPGYEPIIRLCGAKPVFIDT 142 (387)
T ss_pred CCEEEEcCCCccchHHHHHHcCCEEEEeec
Confidence 567999999999999999999999876654
No 72
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=33.08 E-value=49 Score=33.12 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=27.6
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|.++...++..|.++..+++.
T Consensus 105 gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~ 135 (359)
T PRK03158 105 GTNTVMAEPTFSQYRHNAIIEGAEVREVPLK 135 (359)
T ss_pred CCEEEEcCCCHHHHHHHHHHcCCeEEEEecC
Confidence 4679999999999999999999999998874
No 73
>PRK05839 hypothetical protein; Provisional
Probab=33.06 E-value=1e+02 Score=31.53 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=27.5
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
..+|.+++|+|.++..+++..|.++..++.
T Consensus 109 gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~ 138 (374)
T PRK05839 109 NPTIAYPNPFYQIYEGAAIASRAKVLLMPL 138 (374)
T ss_pred CCEEEECCCCchhhHHHHHhcCCEEEEeec
Confidence 578999999999999999999999998875
No 74
>PRK09105 putative aminotransferase; Provisional
Probab=33.01 E-value=58 Score=33.37 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=27.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|..+..+++..|.++.+++..
T Consensus 119 gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~ 149 (370)
T PRK09105 119 TAGLVTADPTYEAGWRAADAQGAPVAKVPLR 149 (370)
T ss_pred CCEEEEeCCChHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999999999888763
No 75
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=32.72 E-value=75 Score=32.44 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=26.3
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
+.|.+++|+|.++..+++..|.++..++.
T Consensus 117 ~~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 145 (393)
T TIGR03538 117 PLVVMPNPFYQIYEGAALLAGAEPYFLNC 145 (393)
T ss_pred ceEEecCCCCcchHHHHHhcCCeEEEeec
Confidence 35999999999999999999999988876
No 76
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=32.28 E-value=94 Score=32.07 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=24.2
Q ss_pred hhccCCCeEEecCCCCCChHHHHhhcCCe
Q 042911 424 RARTISRTIYIPQPTWGNHPKVFTLAGLS 452 (470)
Q Consensus 424 R~~tVTVtVyIsdPTW~NH~~IFq~AGf~ 452 (470)
+....-.+|.+++|+|.++..+++.+|.+
T Consensus 117 ~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~ 145 (409)
T PRK07590 117 DIFGPDNTIAVTDPVYPVYVDTNVMAGRT 145 (409)
T ss_pred HhcCCCCEEEEeCCCCcchHHHHHHcCCc
Confidence 34443567999999999999999999986
No 77
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=32.17 E-value=55 Score=33.57 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=26.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+..+++..|.++..++.
T Consensus 127 gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~ 156 (380)
T PLN03026 127 GDKIIDCPPTFGMYVFDAAVNGAEVIKVPR 156 (380)
T ss_pred CCEEEEcCCChHHHHHHHHHcCCEEEEeec
Confidence 457999999999999999999999988876
No 78
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=31.68 E-value=72 Score=32.17 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=26.8
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
..+.+++|+|.++..+++..|.++..|+..
T Consensus 95 g~viv~~P~y~~~~~~~~~~g~~~~~v~~~ 124 (356)
T PRK08056 95 RRAMIVTPGFAEYRRALQQVGCEIRRYSLR 124 (356)
T ss_pred CCEEEeCCCcHHHHHHHHHcCCeEEEEecc
Confidence 358889999999999999999999999874
No 79
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=31.62 E-value=21 Score=33.55 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=8.0
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCCCCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGVEEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~~ggggsggsi~~~a 218 (470)
||+||.|..++..+... -.||. ..|-||.||+||++|
T Consensus 11 ~G~GG~G~~sf~r~~~~---~~ggp--------------~GG~GG~GG~V~l~~ 47 (156)
T PF01018_consen 11 GGNGGNGCVSFRREKYV---PKGGP--------------DGGNGGNGGDVYLVA 47 (156)
T ss_dssp ----------EEEETTC---CEEEE------------------------EEEEE
T ss_pred ecCCcCCEEeEEeeccc---cCCCC--------------CCCCCCCCceeEEEe
Confidence 57888887776543321 11110 145689999999998
No 80
>PRK06107 aspartate aminotransferase; Provisional
Probab=31.26 E-value=80 Score=32.48 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.8
Q ss_pred ccCCCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 426 RTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 426 ~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
...-.+|++++|+|.+|...+..++..+..+++
T Consensus 114 ~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~ 146 (402)
T PRK06107 114 LEAGDEVIIPAPYWVSYPDMVLANDGTPVIVAC 146 (402)
T ss_pred cCCCCEEEEecCCCcCHHHHHHHcCCEEEEecC
Confidence 333578999999999999999988887766655
No 81
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=30.53 E-value=73 Score=32.79 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
-.+|.+++|+|..+..+++..|+++..++.-..++..+|++
T Consensus 120 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 160 (403)
T TIGR01265 120 GANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLD 160 (403)
T ss_pred CCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHH
Confidence 46799999999999999999999998887632234455543
No 82
>PRK07682 hypothetical protein; Validated
Probab=30.21 E-value=88 Score=31.62 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=26.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|++++|+|.++..+++..|.++..++.
T Consensus 105 gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 134 (378)
T PRK07682 105 GDEVLIVEPSFVSYAPLVTLAGGVPVPVAT 134 (378)
T ss_pred CCEEEEeCCCchhhHHHHHHcCCEEEEeec
Confidence 468999999999999999999998887775
No 83
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=29.63 E-value=64 Score=32.72 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=27.4
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|.++...++..|.++..++..
T Consensus 112 gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 112 GDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred CCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 4579999999999999999999999888763
No 84
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=29.46 E-value=67 Score=32.46 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=26.8
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
.+|.+++|+|..+...++..|.++..++.
T Consensus 100 ~~vli~~P~y~~y~~~~~~~G~~~~~v~~ 128 (351)
T PRK01688 100 DAILYCPPTYGMYSVSAETIGVEIRTVPT 128 (351)
T ss_pred CEEEEcCCCHHHHHHHHHHcCCEEEEeec
Confidence 57999999999999999999999988876
No 85
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=29.44 E-value=65 Score=33.01 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+..+++..|.++...+.
T Consensus 105 gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~ 134 (366)
T PRK01533 105 GDNIVTAGATFPQYRHHAIIEGCEVKEVAL 134 (366)
T ss_pred CCEEEEcCCcHHHHHHHHHHcCCEEEEeec
Confidence 457999999999999999999999988876
No 86
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=29.21 E-value=51 Score=35.21 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=24.5
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCC-CCCCCCCCcEEEEEe
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGV-EEGPPARSSTMVVVA 219 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~-~ggggsggsi~~~aa 219 (470)
||-||.|++|+..+..-| || +. .|-||.||++++.|-
T Consensus 51 gG~GG~G~ssf~~~~~~~--------~g----------~PdGGdGG~GG~V~~~a~ 88 (366)
T KOG1489|consen 51 GGSGGSGASSFFRGYRRP--------RG----------GPDGGDGGNGGHVYFVAK 88 (366)
T ss_pred ccCCCCccchhhhhcccc--------cC----------CCCCCCCCCCceEEEEeC
Confidence 567788899987544311 11 11 246899999999993
No 87
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=29.03 E-value=1.4e+02 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=42.6
Q ss_pred CCceEEEccceEEEccCcEEecCCCCceEEEeceecEEEeeceeEEEeEEEEEEEEEEEcCCceEec
Q 042911 76 RRDVYISGKGNFEILTGVKFNCPVSGCSIAVNISGNFSLAVNSSIVSGTFELVAQNASFLNGSAVNT 142 (470)
Q Consensus 76 ~~~~~i~g~g~l~i~~~v~l~C~~~gC~i~vN~Sg~ftL~~~~~iv~Gsv~~~A~nvtv~~~g~Isa 142 (470)
....++.+.++++|-++|.+ ..+|-+.+...+..+++.++.|=.+..+..+.+++|.++..|..
T Consensus 33 ~~pf~~~~~~~I~iG~~v~i---~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~ 96 (192)
T PRK09677 33 RFPFYIRNDGSINFGEGFTS---GVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIAS 96 (192)
T ss_pred cCCEEEcCCCeEEECCceEE---CCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECC
Confidence 44567778888888888765 56788777667777777776664444433445666666666653
No 88
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=28.95 E-value=86 Score=32.64 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=7.1
Q ss_pred hhhhhhheee
Q 042911 266 IVYGALCITV 275 (470)
Q Consensus 266 ~v~gal~~~v 275 (470)
.|||--|++|
T Consensus 113 ~vYgEkRisv 122 (317)
T KOG1596|consen 113 SVYGEKRISV 122 (317)
T ss_pred cccCceEEEe
Confidence 3777777776
No 89
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=28.03 E-value=68 Score=32.12 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=27.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+..+++..|.++..++.
T Consensus 86 gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~ 115 (330)
T PRK05664 86 PGRVGVLSPCYAEHAHAWRRAGHQVRELDE 115 (330)
T ss_pred CCEEEEcCCChHHHHHHHHHcCCeEEEech
Confidence 467999999999999999999999988864
No 90
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=27.68 E-value=76 Score=32.33 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=27.8
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeeccc
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRYYD 460 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD 460 (470)
.+|.+++|+|..+..+++..|.++..++..+
T Consensus 102 ~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 132 (364)
T PRK04781 102 DAVLVTPPVFGMYAVCARLQNAPLVEVPLVD 132 (364)
T ss_pred CeEEEcCCChHHHHHHHHHcCCEEEEEecCC
Confidence 5799999999999999999999999998754
No 91
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=26.29 E-value=1.3e+02 Score=30.90 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCeEEecCCCCCChHHHHhhcCC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGL 451 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf 451 (470)
-.+|.+++|+|.++..+++..|.
T Consensus 118 gd~Vlv~~P~y~~~~~~~~~~g~ 140 (402)
T TIGR03542 118 DNTVAVQDPVYPAYVDSNVMAGR 140 (402)
T ss_pred CCEEEEeCCCCcchHHHHHHcCC
Confidence 46799999999999999999998
No 92
>PRK07324 transaminase; Validated
Probab=25.71 E-value=1.1e+02 Score=31.32 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=26.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+..+.+..|.++..++.
T Consensus 104 gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 104 GDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred CCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 467999999999999999999999888776
No 93
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=25.56 E-value=1.5e+02 Score=28.54 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=28.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeeccc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYD 460 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD 460 (470)
..+|.+++|.|.+|..+++..|+++.++++.+
T Consensus 83 g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (350)
T cd00609 83 GDEVLVPDPTYPGYEAAARLAGAEVVPVPLDE 114 (350)
T ss_pred CCEEEEcCCCchhHHHHHHHCCCEEEEEeccc
Confidence 56899999999999999999999999888754
No 94
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=24.95 E-value=90 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=25.8
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeee
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYR 457 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYp 457 (470)
.+|.+++|+|.+|..+++..|+++.+++
T Consensus 87 g~vl~~~p~y~~~~~~~~~~g~~~~~~~ 114 (330)
T TIGR01140 87 GRVLVLAPTYSEYARAWRAAGHEVVELP 114 (330)
T ss_pred CeEEEeCCCcHHHHHHHHHcCCEEEEeC
Confidence 3799999999999999999999998887
No 95
>PRK07568 aspartate aminotransferase; Provisional
Probab=24.87 E-value=1.3e+02 Score=30.48 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|++++|+|.++..+++..|.++..++..
T Consensus 112 gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 142 (397)
T PRK07568 112 GDEILVPEPFYANYNGFATSAGVKIVPVTTK 142 (397)
T ss_pred CCEEEEecCCCccHHHHHHHcCCEEEEeecC
Confidence 4689999999999999999999998888763
No 96
>PRK06225 aspartate aminotransferase; Provisional
Probab=23.73 E-value=1.4e+02 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeeccc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYD 460 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD 460 (470)
-.+|.+++|+|..+...++..|.++..++..+
T Consensus 107 gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~ 138 (380)
T PRK06225 107 GDNAVTPDPGYLIIDNFASRFGAEVIEVPIYS 138 (380)
T ss_pred CCEEEEcCCCCcchHHHHHHhCceEEeecccc
Confidence 35799999999999999999999998888643
No 97
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=23.28 E-value=98 Score=31.10 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|.++..+++..|.++..++.
T Consensus 94 gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~ 123 (337)
T PRK03967 94 GKHIVITPPTFGMYSFYAKLNGIPVIDVPL 123 (337)
T ss_pred CCeEEEeCCChHHHHHHHHHcCCeEEEeec
Confidence 568999999999999999999999988876
No 98
>PRK03321 putative aminotransferase; Provisional
Probab=23.25 E-value=89 Score=31.18 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=27.1
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|.++..+++..|.++..++.-
T Consensus 98 gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~ 128 (352)
T PRK03321 98 GDEVIFAWRSFEAYPILVQVAGATPVQVPLT 128 (352)
T ss_pred CCEEEeCCCCHHHHHHHHHHcCCEEEEccCC
Confidence 4679999999999999999999998888763
No 99
>PRK09265 aminotransferase AlaT; Validated
Probab=22.91 E-value=1.6e+02 Score=30.35 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=25.7
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+..+++.+|.++..++.
T Consensus 119 gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~ 148 (404)
T PRK09265 119 GDEVLVPAPDYPLWTAAVSLSGGKPVHYLC 148 (404)
T ss_pred CCEEEEeCCCCcChHHHHHHcCCEEEEEec
Confidence 467999999999999999999988776653
No 100
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=22.58 E-value=1.2e+02 Score=30.44 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=26.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|.++..+++..|.++..++.
T Consensus 100 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 129 (351)
T PRK14807 100 GDVVIYPHPSFAMYSVYSKIAGAVEIPVKL 129 (351)
T ss_pred CCEEEEeCCChHHHHHHHHHcCCeEEEeec
Confidence 467999999999999999999999877764
No 101
>PRK06207 aspartate aminotransferase; Provisional
Probab=22.58 E-value=1.5e+02 Score=30.69 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=26.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+..+++..|.++..++.
T Consensus 126 Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 155 (405)
T PRK06207 126 GDKVAIVQPDYFANRKLVEFFEGEMVPVQL 155 (405)
T ss_pred CCEEEEeCCCchhHHHHHHHcCCEEEEEec
Confidence 468999999999999999999999887764
No 102
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only]
Probab=22.15 E-value=38 Score=30.08 Aligned_cols=11 Identities=64% Similarity=1.165 Sum_probs=7.7
Q ss_pred CcCCCC--CCccc
Q 042911 3 RFHSHP--PPTLS 13 (470)
Q Consensus 3 ~~~~~~--~~~~~ 13 (470)
-||||| +|.+|
T Consensus 74 ~yHSHP~~~~~pS 86 (134)
T COG1310 74 WYHSHPGGPPYPS 86 (134)
T ss_pred EEcCCCCCCCCcC
Confidence 379999 55544
No 103
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=21.68 E-value=1.1e+02 Score=30.91 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=26.5
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
..|.+++|+|..+..+++.+|.++..++.
T Consensus 97 d~v~v~~P~y~~~~~~~~~~g~~~~~v~~ 125 (335)
T PRK14808 97 DRSVFFPPTYSCYRIFAKAVGAKFLEVPL 125 (335)
T ss_pred CcEEECCCCHHHHHHHHHHcCCeEEEecC
Confidence 46999999999999999999999988875
No 104
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=21.52 E-value=1.2e+02 Score=30.23 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeee
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYR 457 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYp 457 (470)
-.+|.+++|+|..+...++..|.++..++
T Consensus 111 gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 139 (361)
T PRK00950 111 GDEVIIPTPTFSYYEISAKAHGAKPVYAK 139 (361)
T ss_pred CCEEEEcCCChHHHHHHHHHcCCEEEEee
Confidence 45799999999999999999999988776
No 105
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=20.28 E-value=1.6e+02 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.739 Sum_probs=15.2
Q ss_pred CCCCCCCCCCceeeccCCc
Q 042911 162 GGSGGHGGRGACCLVDESK 180 (470)
Q Consensus 162 G~GGGHGGrGa~c~~~~~~ 180 (470)
|..||.||+||+-+....+
T Consensus 33 gp~gg~GG~Gg~v~~~~~~ 51 (390)
T PRK12298 33 GPDGGDGGDGGDVYLEADE 51 (390)
T ss_pred CCCCCCCCCCCEEEEEECC
Confidence 6778999999998876444
No 106
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=20.19 E-value=1.5e+02 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=26.5
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-..|.|++|+|..+....+..|.++..++.
T Consensus 106 gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l 135 (357)
T PRK14809 106 GDTVLVPDPGFAYYGMSARYHHGEVREYPV 135 (357)
T ss_pred CCEEEEeCCChHHHHHHHHHcCCeEEEEec
Confidence 457999999999999988889999888876
Done!