Query 042911
Match_columns 470
No_of_seqs 248 out of 751
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 19:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h51_A Aspartate aminotransfer 99.7 1.5E-19 5.2E-24 183.6 -2.2 132 336-469 10-178 (420)
2 3meb_A Aspartate aminotransfer 98.9 3.1E-10 1.1E-14 113.2 1.5 127 341-469 19-190 (448)
3 3k7y_A Aspartate aminotransfer 98.7 1.9E-09 6.6E-14 108.1 2.2 124 343-469 1-162 (405)
4 4f4e_A Aromatic-amino-acid ami 97.8 3.9E-06 1.3E-10 82.1 1.2 126 341-469 19-183 (420)
5 7aat_A Aspartate aminotransfer 97.8 6E-06 2.1E-10 79.5 1.4 125 344-469 1-163 (401)
6 4eu1_A Mitochondrial aspartate 97.4 2.8E-05 9.5E-10 75.5 0.9 125 344-469 14-171 (409)
7 3dyd_A Tyrosine aminotransfera 96.8 0.00066 2.3E-08 66.8 3.9 121 346-469 27-182 (427)
8 3fsl_A Aromatic-amino-acid ami 96.1 0.0016 5.5E-08 62.2 1.3 121 346-468 1-160 (397)
9 1yaa_A Aspartate aminotransfer 94.0 0.022 7.5E-07 55.0 2.5 122 344-468 2-163 (412)
10 1ajs_A Aspartate aminotransfer 88.6 0.18 6.2E-06 48.5 2.3 123 344-468 3-170 (412)
11 2ay1_A Aroat, aromatic amino a 86.4 0.18 6.1E-06 48.1 0.8 120 346-468 1-156 (394)
12 2q7w_A Aspartate aminotransfer 83.8 0.46 1.6E-05 45.2 2.3 118 346-467 1-158 (396)
13 3rq1_A Aminotransferase class 69.0 3.9 0.00013 39.4 4.2 39 429-468 126-164 (418)
14 3tcm_A Alanine aminotransferas 68.4 4.6 0.00016 40.9 4.8 41 429-469 182-222 (500)
15 3t18_A Aminotransferase class 62.3 5.9 0.0002 38.0 3.9 39 429-468 125-163 (413)
16 2l6f_A Focal adhesion kinase 1 66.1 1.6 5.6E-05 41.8 0.0 17 221-237 189-205 (215)
17 1lnz_A SPO0B-associated GTP-bi 47.6 24 0.00083 34.8 5.7 37 165-218 12-48 (342)
18 2l6f_A Focal adhesion kinase 1 52.9 4 0.00014 39.2 0.0 25 150-174 174-198 (215)
19 3nra_A Aspartate aminotransfer 45.5 14 0.00049 34.9 3.6 40 429-468 126-169 (407)
20 3ele_A Amino transferase; RER0 43.6 26 0.0009 33.1 5.1 38 430-468 125-162 (398)
21 3ihj_A Alanine aminotransferas 43.3 17 0.00058 36.9 3.9 38 431-468 183-220 (498)
22 3jtx_A Aminotransferase; NP_28 41.2 15 0.00051 34.7 2.9 39 430-469 121-159 (396)
23 3get_A Histidinol-phosphate am 35.8 24 0.00082 32.9 3.4 30 429-458 106-135 (365)
24 3vbi_A ANTD, galactoside O-ace 35.8 99 0.0034 27.2 7.3 66 69-141 35-101 (205)
25 1udx_A The GTP-binding protein 31.3 38 0.0013 34.5 4.3 35 165-218 12-48 (416)
26 2x5f_A Aspartate_tyrosine_phen 28.9 35 0.0012 32.8 3.4 39 429-468 137-176 (430)
27 3qgu_A LL-diaminopimelate amin 27.7 51 0.0017 31.9 4.3 26 427-452 153-178 (449)
28 3h14_A Aminotransferase, class 27.4 42 0.0014 31.7 3.6 31 429-459 115-145 (391)
29 3dr4_A Putative perosamine syn 27.3 65 0.0022 30.5 4.9 40 429-469 96-135 (391)
30 2po3_A 4-dehydrase; external a 27.0 65 0.0022 31.1 4.9 39 429-468 90-128 (424)
31 3ez1_A Aminotransferase MOCR f 25.8 23 0.00079 34.0 1.4 30 430-459 125-154 (423)
32 3a1m_A Chimera of thrombin cle 25.6 3E+02 0.01 24.7 8.5 65 79-144 22-95 (139)
33 3p1t_A Putative histidinol-pho 25.4 64 0.0022 29.5 4.3 30 429-458 90-119 (337)
34 1b5p_A Protein (aspartate amin 25.2 49 0.0017 31.4 3.6 31 429-459 115-145 (385)
35 4dq6_A Putative pyridoxal phos 24.7 65 0.0022 30.1 4.3 31 429-459 114-144 (391)
36 3bwn_A AT1G70560, L-tryptophan 24.3 36 0.0012 32.9 2.5 28 431-458 121-148 (391)
37 3ppl_A Aspartate aminotransfer 24.3 31 0.001 33.4 2.0 31 429-459 133-163 (427)
38 3u6r_H Antibody 1:7 (heavy cha 23.0 22 0.00076 30.8 0.7 19 123-141 80-98 (149)
39 1u08_A Hypothetical aminotrans 22.7 75 0.0026 29.9 4.3 30 429-458 115-144 (386)
40 3f6t_A Aspartate aminotransfer 21.4 23 0.00079 36.3 0.5 40 429-468 193-234 (533)
41 3e2y_A Kynurenine-oxoglutarate 20.8 52 0.0018 31.1 2.8 31 429-459 109-139 (410)
42 3fvs_A Kynurenine--oxoglutarat 20.8 65 0.0022 30.6 3.5 31 429-459 115-145 (422)
43 3uwc_A Nucleotide-sugar aminot 20.7 83 0.0028 29.3 4.1 38 429-468 78-115 (374)
No 1
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.72 E-value=1.5e-19 Score=183.61 Aligned_cols=132 Identities=25% Similarity=0.326 Sum_probs=103.0
Q ss_pred hhhhhhccccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCCC------------CCCCCCee----
Q 042911 336 GIEAQRLVLSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSPE------------DCNMNSSL---- 397 (470)
Q Consensus 336 ~i~aqr~tlSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~e------------DpsLNhEY---- 397 (470)
+-.|.|.+.|.|.+||.+|+||+. .|.++ ++| +| ||||++|+||||..++|. |...+|+|
T Consensus 10 ~~~~~m~~~~~~~~v~~~p~d~i~-~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~ 87 (420)
T 4h51_A 10 STQAAMTTAERWQKIQAQAPDVIF-DLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPIS 87 (420)
T ss_dssp -----CCHHHHHHTCCCCCCCHHH-HHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTT
T ss_pred cccchhhhhHHHhCCCCCCCChHH-HHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcC
Confidence 345778999999999999999543 68888 889 87 999999999999877772 66789999
Q ss_pred ---eeE-----EEeeccc---------eeeccCceehHHHHHHhhcc-CCCeEEecCCCCCChHHHHhhcCCe-eeeeec
Q 042911 398 ---SFT-----PQICRVE---------DIVVDGPVEGSVVRFRRART-ISRTIYIPQPTWGNHPKVFTLAGLS-VKSYRY 458 (470)
Q Consensus 398 ---sFt-----LlfG~ds---------~aI~eGRV~ggA~FLsR~~t-VTVtVyIsdPTW~NH~~IFq~AGf~-V~eYpY 458 (470)
+|+ ++||++. ++..+|.++.++.||.+++. ...+||||+|+|+||..||+.+|++ |+.|+|
T Consensus 88 G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~ 167 (420)
T 4h51_A 88 GYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAY 167 (420)
T ss_dssp CCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEEC
T ss_pred ChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecc
Confidence 677 6677642 33344444446888888763 3568999999999999999999997 899999
Q ss_pred ccCCCCCccCC
Q 042911 459 YDPATRGLNFH 469 (470)
Q Consensus 459 yD~~T~~LDfd 469 (470)
|++++..+||+
T Consensus 168 ~~~~~~~~d~~ 178 (420)
T 4h51_A 168 YDPKTVSLNFE 178 (420)
T ss_dssp EEGGGTEECHH
T ss_pred ccccccCCCHH
Confidence 99999988875
No 2
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=98.88 E-value=3.1e-10 Score=113.24 Aligned_cols=127 Identities=16% Similarity=0.214 Sum_probs=89.6
Q ss_pred hccccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCC--------------CCCCCCCee-------
Q 042911 341 RLVLSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSP--------------EDCNMNSSL------- 397 (470)
Q Consensus 341 r~tlSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~--------------eDpsLNhEY------- 397 (470)
+.++|+|.+|+..|+|++. .+.+. ++| +|+|+||++|.|+|+...++ +++..++.|
T Consensus 19 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~ 97 (448)
T 3meb_A 19 PGSMSVFSGFPASPPDAIL-NLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFP 97 (448)
T ss_dssp ---CCTTTTCCCCCCCTTH-HHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCH
T ss_pred cchhhHHhcCCCCCCChHH-HHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchH
Confidence 6678999999999999433 56666 888 99999999999998732221 245667777
Q ss_pred eeE-----EEeeccceeeccCcee---h----HH-----HHHHhhccCCCeEEecCCCCCChHHHHh----hcCCeeeee
Q 042911 398 SFT-----PQICRVEDIVVDGPVE---G----SV-----VRFRRARTISRTIYIPQPTWGNHPKVFT----LAGLSVKSY 456 (470)
Q Consensus 398 sFt-----LlfG~ds~aI~eGRV~---g----gA-----~FLsR~~tVTVtVyIsdPTW~NH~~IFq----~AGf~V~eY 456 (470)
+|+ +++|.+.+.+.+.+|. + .| .++..+.+ -.+|++++|+|.+|..+++ .+|+++..|
T Consensus 98 ~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~-gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~ 176 (448)
T 3meb_A 98 LFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMP-KAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEY 176 (448)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCT-TCCEEEESSCCTHHHHHHHHHHCTTTSCCEEE
T ss_pred HHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCC-CCEEEECCCCCHhHHHHHHhhHHhCCCeEEEE
Confidence 333 4467664333333333 1 12 33344444 5689999999999999999 999999999
Q ss_pred ecccCC-CCCccCC
Q 042911 457 RYYDPA-TRGLNFH 469 (470)
Q Consensus 457 pYyD~~-T~~LDfd 469 (470)
+|+|++ +..+|++
T Consensus 177 ~~~~~~~~~~~d~e 190 (448)
T 3meb_A 177 TYLRKDGELEIDFS 190 (448)
T ss_dssp CCBCTTSCSSBCHH
T ss_pred eccccccCCCcCHH
Confidence 999987 6777764
No 3
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=98.75 E-value=1.9e-09 Score=108.14 Aligned_cols=124 Identities=14% Similarity=0.198 Sum_probs=87.8
Q ss_pred cccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCC------------CCCCCCCee-------eeE-
Q 042911 343 VLSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSP------------EDCNMNSSL-------SFT- 400 (470)
Q Consensus 343 tlSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~------------eDpsLNhEY-------sFt- 400 (470)
|+|+|.+|+..|+|++. .+.+. ++| .++||||++|.|||+...++ +++..++.| +|+
T Consensus 1 ~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~G~~~lr~ 79 (405)
T 3k7y_A 1 MDKLLSSLENIEVDNIL-KTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGNGTEDFST 79 (405)
T ss_dssp CCCGGGGCCCCCCCHHH-HHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHHHHHHHCCCCCCCTTSSCHHHHH
T ss_pred CcchhhcCCCCCCChHH-HHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHHHhcCCCCCCCCCCCCCcHHHHH
Confidence 68999999999999433 55555 888 99999999999998743221 133456777 444
Q ss_pred ----EEeeccceeeccCce---eh----H-----HHHHHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCC
Q 042911 401 ----PQICRVEDIVVDGPV---EG----S-----VVRFRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATR 464 (470)
Q Consensus 401 ----LlfG~ds~aI~eGRV---~g----g-----A~FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~ 464 (470)
.+++++...+...++ .+ . +.+|.++.+ .+|+|++|+|.+|..+++.+|.++..|+++++++.
T Consensus 80 aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~--d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~ 157 (405)
T 3k7y_A 80 LTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV--ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLI 157 (405)
T ss_dssp HHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC--CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTT
T ss_pred HHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC--CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccC
Confidence 335554433333332 11 1 233333333 79999999999999999999999999999887667
Q ss_pred CccCC
Q 042911 465 GLNFH 469 (470)
Q Consensus 465 ~LDfd 469 (470)
.+|++
T Consensus 158 ~~d~~ 162 (405)
T 3k7y_A 158 DINYD 162 (405)
T ss_dssp EECHH
T ss_pred CcCHH
Confidence 77764
No 4
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=97.82 E-value=3.9e-06 Score=82.13 Aligned_cols=126 Identities=23% Similarity=0.362 Sum_probs=81.4
Q ss_pred hccccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCCC------------CCCCCCee-------ee
Q 042911 341 RLVLSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSPE------------DCNMNSSL-------SF 399 (470)
Q Consensus 341 r~tlSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~e------------DpsLNhEY-------sF 399 (470)
+.++|+|..++..|++++. .+.+. ++| .+++++|++|.|++....++. +....+.| +|
T Consensus 19 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~l 97 (420)
T 4f4e_A 19 PGSMSLFSAVELAPRDPIL-GLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAY 97 (420)
T ss_dssp ---CCTTTTCCCCCCCHHH-HHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHH
T ss_pred ccccCHhhcCCcCCCChHH-HHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHH
Confidence 5677899999999999533 55555 777 899999999999987554441 11133455 23
Q ss_pred E-----EEeeccc--------eeeccCceehHHH-----HHHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccC
Q 042911 400 T-----PQICRVE--------DIVVDGPVEGSVV-----RFRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDP 461 (470)
Q Consensus 400 t-----LlfG~ds--------~aI~eGRV~ggA~-----FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~ 461 (470)
+ ++.+... .++.+.-.. .|. ++..+.+ -.+|++++|+|.+|..+++.+|.++..|+++++
T Consensus 98 r~~ia~~l~~~~~~~~~~~~~~i~~t~G~t-~al~~~~~~~~~~~~-gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~ 175 (420)
T 4f4e_A 98 DASVQKLLLGDDSPLIAAGRVVTAQALGGT-GALKIGADFLRTLNP-KAKVAISDPSWENHRALFDMAGFEVVAYPYYDA 175 (420)
T ss_dssp HHHHHHHHHCTTCHHHHTTCEEEEEEEHHH-HHHHHHHHHHHHHCT-TCCEEEEESCCHHHHHHHHHTTCCEEEEECEET
T ss_pred HHHHHHHhcCCCccccccCceEEEECCccH-HHHHHHHHHHHHhCC-CCEEEEeCCCcHhHHHHHHHcCCeEEEeeeecc
Confidence 3 2222221 222211111 122 2333333 568999999999999999999999999999887
Q ss_pred CCCCccCC
Q 042911 462 ATRGLNFH 469 (470)
Q Consensus 462 ~T~~LDfd 469 (470)
++..+|++
T Consensus 176 ~~~~~d~~ 183 (420)
T 4f4e_A 176 KTNGVNFD 183 (420)
T ss_dssp TTTEECHH
T ss_pred ccCccCHH
Confidence 77777754
No 5
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=97.75 E-value=6e-06 Score=79.49 Aligned_cols=125 Identities=26% Similarity=0.450 Sum_probs=79.8
Q ss_pred ccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCCC------------CCCCCCee-------eeE--
Q 042911 344 LSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSPE------------DCNMNSSL-------SFT-- 400 (470)
Q Consensus 344 lSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~e------------DpsLNhEY-------sFt-- 400 (470)
+|+|.++|..|+|++. .+.+. ++| .|++++|++|.|+|+...++- +...++.| +++
T Consensus 1 ~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ 79 (401)
T 7aat_A 1 SSWWSHVEMGPPDPIL-GVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRA 79 (401)
T ss_dssp CCSSTTCCCCCCCHHH-HHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHH
T ss_pred CChhhcCCCCCCChhH-HHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHH
Confidence 5899999999998432 45555 778 899999999999887444331 11234455 232
Q ss_pred ---EEeeccceeeccCce-----ehH--HH-----HHHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCC
Q 042911 401 ---PQICRVEDIVVDGPV-----EGS--VV-----RFRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRG 465 (470)
Q Consensus 401 ---LlfG~ds~aI~eGRV-----~gg--A~-----FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~ 465 (470)
++-.+....+...+| .++ |. .|..+...-.+|.+++|+|.+|..+++..|.++..+++.+++...
T Consensus 80 ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (401)
T 7aat_A 80 SAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCS 159 (401)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTE
T ss_pred HHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCc
Confidence 111111100111222 111 22 233333335689999999999999999999999999998776666
Q ss_pred ccCC
Q 042911 466 LNFH 469 (470)
Q Consensus 466 LDfd 469 (470)
+|++
T Consensus 160 ~d~~ 163 (401)
T 7aat_A 160 LDFT 163 (401)
T ss_dssp ECHH
T ss_pred cCHH
Confidence 6653
No 6
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=97.42 E-value=2.8e-05 Score=75.46 Aligned_cols=125 Identities=24% Similarity=0.294 Sum_probs=68.7
Q ss_pred ccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCC-------CCCCCCCee-------eeE-----EE
Q 042911 344 LSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSP-------EDCNMNSSL-------SFT-----PQ 402 (470)
Q Consensus 344 lSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~-------eDpsLNhEY-------sFt-----Ll 402 (470)
.|+|.+++..|+|++. .+.+. ++| .+++++|+++.|++....++ ..+...+.| +|+ .+
T Consensus 14 ~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~ 92 (409)
T 4eu1_A 14 AQTQGPGSMGKPDPIL-GLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLC 92 (409)
T ss_dssp -------------CHH-HHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHH
T ss_pred hhHhhcCCCCCCChHH-HHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHH
Confidence 4679999999999532 45555 778 99999999999977621111 123344455 233 23
Q ss_pred eeccceeeccCce-----eh--HHHH----HHh-hccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 403 ICRVEDIVVDGPV-----EG--SVVR----FRR-ARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 403 fG~ds~aI~eGRV-----~g--gA~F----LsR-~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
+|.+...+...+| .+ +|.. +.+ +.+--.+|.+++|+|.+|..+++..|.++..|++.+.+...+|++
T Consensus 93 ~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 171 (409)
T 4eu1_A 93 FGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLA 171 (409)
T ss_dssp HCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHH
T ss_pred cCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHH
Confidence 4544322222332 11 2332 222 323236899999999999999999999999999977666666653
No 7
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=96.81 E-value=0.00066 Score=66.79 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=62.0
Q ss_pred ccccccccCCCccccccccc-ccC-CCCe--eeeccCcccCc-cCCCC-----------CCCCCCCee-------eeE--
Q 042911 346 LFYSIHVRPGSVLCGPLENA-TTD-AHTK--AYCEIQDCPVE-LLHSP-----------EDCNMNSSL-------SFT-- 400 (470)
Q Consensus 346 lF~dVp~gP~D~L~~~L~ka-~~D-~p~K--VnLgiGaYRdE-el~i~-----------eDpsLNhEY-------sFt-- 400 (470)
.|.+++..|+|+++ .|.+. +.| ++.| ++|++|.+-.+ ...++ ++. ..+.| +|+
T Consensus 27 ~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~ 104 (427)
T 3dyd_A 27 RPSDMAKKTFNPIR-AIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSG-KYNGYAPSIGFLSSREE 104 (427)
T ss_dssp CCCC-----------------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHC-CSSSCCCTTCCHHHHHH
T ss_pred chhhHhhcccchHH-HHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcC-cCCCCCCCCCcHHHHHH
Confidence 58899999999644 56666 778 8888 99999994321 22222 111 12234 233
Q ss_pred ---EEeec-----cceeeccCceehHHHH-HHh-hccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 401 ---PQICR-----VEDIVVDGPVEGSVVR-FRR-ARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 401 ---LlfG~-----ds~aI~eGRV~ggA~F-LsR-~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
++.++ .+.++...-.. .|.. +.+ +..--.+|++++|+|.+|..+++.+|+++..|++.+..+..+|++
T Consensus 105 la~~~~~~~~~~~~~~v~~t~g~t-~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 182 (427)
T 3dyd_A 105 IASYYHCPEAPLEAKDVILTSGCS-QAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLK 182 (427)
T ss_dssp HHHHHCBTTBCCCGGGEEEESSHH-HHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHH
T ss_pred HHHHHhhcCCCCChHHEEEecCcH-HHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHH
Confidence 22211 12222211101 1222 122 222356899999999999999999999999999977666666653
No 8
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=96.05 E-value=0.0016 Score=62.20 Aligned_cols=121 Identities=22% Similarity=0.326 Sum_probs=75.2
Q ss_pred ccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCCCCC-------------CCCCCCee-------eeE---
Q 042911 346 LFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLHSPE-------------DCNMNSSL-------SFT--- 400 (470)
Q Consensus 346 lF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~i~e-------------DpsLNhEY-------sFt--- 400 (470)
+|.+||..|+|++. .+.+. ++| .+++++|++|.|++....++- +....+.| +++
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 79 (397)
T 3fsl_A 1 MFQKVDAYAGDPIL-TLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAI 79 (397)
T ss_dssp CCTTCCCCCCCHHH-HHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHH
T ss_pred CcccCCCCCCCchh-hHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHH
Confidence 48899999999432 55555 778 899999999999876433331 11123444 222
Q ss_pred --EEee------ccc--eeeccCceehH---H-HHHHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCc
Q 042911 401 --PQIC------RVE--DIVVDGPVEGS---V-VRFRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGL 466 (470)
Q Consensus 401 --LlfG------~ds--~aI~eGRV~gg---A-~FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~L 466 (470)
.+.. +.+ .++.+.-...+ + .++..+.+ -.+|.+++|+|.++..+++..|.++..+++.+.+...+
T Consensus 80 a~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~-gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (397)
T 3fsl_A 80 APLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFP-ESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGV 158 (397)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCT-TCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEE
T ss_pred HHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCC-CCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcC
Confidence 1111 112 22222211111 1 12222333 46799999999999999999999999999976656666
Q ss_pred cC
Q 042911 467 NF 468 (470)
Q Consensus 467 Df 468 (470)
|+
T Consensus 159 d~ 160 (397)
T 3fsl_A 159 RF 160 (397)
T ss_dssp CH
T ss_pred cH
Confidence 64
No 9
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=93.99 E-value=0.022 Score=55.05 Aligned_cols=122 Identities=22% Similarity=0.366 Sum_probs=72.4
Q ss_pred ccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccCC--CC--------C---CCCCCCee-------eeE-
Q 042911 344 LSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELLH--SP--------E---DCNMNSSL-------SFT- 400 (470)
Q Consensus 344 lSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel~--i~--------e---DpsLNhEY-------sFt- 400 (470)
+|+|..++..+++++. .+.+. +++ .+++++|++|.|++.... ++ + +....+.| +++
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~ 80 (412)
T 1yaa_A 2 ATLFNNIELLPPDALF-GIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp TTTTTTCCCCCCCTTH-HHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred cchhccCcccCCCcHH-HHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHH
Confidence 5679999999988533 34444 566 788999999999665211 11 0 11122334 222
Q ss_pred ----EEeec------cceeec--cCceehHHHH-----HHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCC
Q 042911 401 ----PQICR------VEDIVV--DGPVEGSVVR-----FRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPAT 463 (470)
Q Consensus 401 ----LlfG~------ds~aI~--eGRV~ggA~F-----LsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T 463 (470)
++.+. .+.++. +.-.. .|.. +..+.+ -.+|++++|+|..+..+++..|.++..++.+++++
T Consensus 81 ~ia~~~~~~~~~~~~~~~i~~~~t~g~~-~a~~~~~~~~~~~~~-gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 158 (412)
T 1yaa_A 81 NAAKIIFGTQSDALQEDRVISVQSLSGT-GALHISAKFFSKFFP-DKLVYLSKPTWANHMAIFENQGLKTATYPYWANET 158 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHH-HHHHHHHHHHHHHCT-TCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTT
T ss_pred HHHHHHhcCCCCCCCcceEEEEeccchH-hHHHHHHHHHHHhCC-CCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCC
Confidence 11121 122222 11001 1222 222333 45799999999999999999999999999876555
Q ss_pred CCccC
Q 042911 464 RGLNF 468 (470)
Q Consensus 464 ~~LDf 468 (470)
..+|+
T Consensus 159 ~~~d~ 163 (412)
T 1yaa_A 159 KSLDL 163 (412)
T ss_dssp TEECH
T ss_pred CccCH
Confidence 55654
No 10
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=88.57 E-value=0.18 Score=48.46 Aligned_cols=123 Identities=23% Similarity=0.367 Sum_probs=70.1
Q ss_pred ccccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccC--CCC-----------CCCCCCCee-------eeE-
Q 042911 344 LSLFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELL--HSP-----------EDCNMNSSL-------SFT- 400 (470)
Q Consensus 344 lSlF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel--~i~-----------eDpsLNhEY-------sFt- 400 (470)
.|+|..++..|++++. .+.+. +++ .++.++|++|.|.+... .++ +++...+.| +++
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~ 81 (412)
T 1ajs_A 3 PSVFAEVPQAQPVLVF-KLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRT 81 (412)
T ss_dssp CCTTTTCCCCCCCHHH-HHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred cchhhhCcccCCchHH-HHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHH
Confidence 4678889888888433 44444 556 77889999999854321 111 112223344 222
Q ss_pred ----EEeec------cceeec--cCceehHHHH----HHhhccCC-----CeEEecCCCCCChHHHHhhcCCe-eeeeec
Q 042911 401 ----PQICR------VEDIVV--DGPVEGSVVR----FRRARTIS-----RTIYIPQPTWGNHPKVFTLAGLS-VKSYRY 458 (470)
Q Consensus 401 ----LlfG~------ds~aI~--eGRV~ggA~F----LsR~~tVT-----VtVyIsdPTW~NH~~IFq~AGf~-V~eYpY 458 (470)
++-+. .+.++. +.-.. .|.. +.+...-- .+|.+++|+|..+..+++..|.+ +..+++
T Consensus 82 ~la~~~~~~~~~~~~~~~v~~~~t~gg~-~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 160 (412)
T 1ajs_A 82 CASRLALGDDSPALQEKRVGGVQSLGGT-GALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHH-HHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEEC
T ss_pred HHHHHHhcCCCCccCCCcEEEEECCCcH-HHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEee
Confidence 11121 122222 11111 1222 11222223 57999999999999999999999 999988
Q ss_pred ccCCCCCccC
Q 042911 459 YDPATRGLNF 468 (470)
Q Consensus 459 yD~~T~~LDf 468 (470)
..++...+|+
T Consensus 161 ~~~~~~~~d~ 170 (412)
T 1ajs_A 161 WDTEKRGLDL 170 (412)
T ss_dssp EETTTTEECH
T ss_pred ecCCCCccCH
Confidence 5434444554
No 11
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=86.42 E-value=0.18 Score=48.12 Aligned_cols=120 Identities=21% Similarity=0.338 Sum_probs=68.6
Q ss_pred ccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccC--CCC-----------CCCCCCCee-------eeE---
Q 042911 346 LFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELL--HSP-----------EDCNMNSSL-------SFT--- 400 (470)
Q Consensus 346 lF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel--~i~-----------eDpsLNhEY-------sFt--- 400 (470)
+|.+++..|++++. .+.+. +++ .++.++|+++.|.+... .++ +++ ..+.| +++
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~l 78 (394)
T 2ay1_A 1 MLGNLKPQAPDKIL-ALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETE-TTKTYAGLSGEPEFQKAM 78 (394)
T ss_dssp CGGGCCCCCCCSHH-HHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHC-CCCCCCCSSCCHHHHHHH
T ss_pred CCccCccCCCccHH-HHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCc-ccCCCCCCCCcHHHHHHH
Confidence 48889999998432 34444 666 77889999999865422 111 111 22334 222
Q ss_pred --EEeec---cceeec--cCceehH----HHHHHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 401 --PQICR---VEDIVV--DGPVEGS----VVRFRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 401 --LlfG~---ds~aI~--eGRV~gg----A~FLsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
++.+. .+.++. ..-...+ ...+.++.+ -.+|.+++|+|..+..+++..|.++..+++...++..+|+
T Consensus 79 a~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~-gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 156 (394)
T 2ay1_A 79 GELILGDGLKSETTATLATVGGTGALRQALELARMANP-DLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF 156 (394)
T ss_dssp HHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCT-TCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred HHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCC-CCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCH
Confidence 22232 122221 1100011 122222323 4579999999999999999999999999885433444443
No 12
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=83.80 E-value=0.46 Score=45.18 Aligned_cols=118 Identities=22% Similarity=0.362 Sum_probs=58.2
Q ss_pred ccccccccCCCccccccccc-ccC-CCCeeeeccCcccCccC--CCC-----------CCCCCCCee-------eeE---
Q 042911 346 LFYSIHVRPGSVLCGPLENA-TTD-AHTKAYCEIQDCPVELL--HSP-----------EDCNMNSSL-------SFT--- 400 (470)
Q Consensus 346 lF~dVp~gP~D~L~~~L~ka-~~D-~p~KVnLgiGaYRdEel--~i~-----------eDpsLNhEY-------sFt--- 400 (470)
+|.+++..|++++. .+.+. .++ .++.++|+.|.|++... .++ +++ ..+.| +++
T Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~y~~~~g~~~lr~~l 78 (396)
T 2q7w_A 1 MFENITAAPADPIL-GLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENE-TTKNYLGIDGIPEFGRCT 78 (396)
T ss_dssp -CTTCCCCCC------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHC-CCCCCCCTTCCHHHHHHH
T ss_pred CccccccCCCchHH-HHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcc-cccCCCCCCCCHHHHHHH
Confidence 58888888888433 33334 555 67889999999876422 111 111 12334 222
Q ss_pred --EEeec------cceeec--cCceehHHHH-----HHhhccCCCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCC
Q 042911 401 --PQICR------VEDIVV--DGPVEGSVVR-----FRRARTISRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRG 465 (470)
Q Consensus 401 --LlfG~------ds~aI~--eGRV~ggA~F-----LsR~~tVTVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~ 465 (470)
++.++ .+.++. ..-.. .|.. +..+.+ -.+|.+++|+|..+..+++..|.++..+++...+...
T Consensus 79 a~~~~~~~~~~~~~~~v~~~~~~g~~-~a~~~~~~~~~~~~~-gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 156 (396)
T 2q7w_A 79 QELLFGKGSALINDKRARTAQTPGGT-GALRVAADFLAKNTS-VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHT 156 (396)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEESHHH-HHHHHHHHHHHHHSC-CCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTE
T ss_pred HHHHhcCCCCccccccEEEEecccch-hhHHHHHHHHHHhCC-CCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCC
Confidence 11111 112221 11001 1221 222223 4579999999999999999999999988875323334
Q ss_pred cc
Q 042911 466 LN 467 (470)
Q Consensus 466 LD 467 (470)
+|
T Consensus 157 ~d 158 (396)
T 2q7w_A 157 LD 158 (396)
T ss_dssp EC
T ss_pred cC
Confidence 44
No 13
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=69.01 E-value=3.9 Score=39.36 Aligned_cols=39 Identities=15% Similarity=0.368 Sum_probs=32.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|.+|..+++.+|.++..+++.+.+ ..+|+
T Consensus 126 gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~ 164 (418)
T 3rq1_A 126 GDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNH 164 (418)
T ss_dssp TCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCH
T ss_pred CCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCH
Confidence 4689999999999999999999999999986543 45554
No 14
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=68.41 E-value=4.6 Score=40.94 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=34.5
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
-.+|++++|+|.++..+++..|.++..|++.+..+..+|++
T Consensus 182 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 222 (500)
T 3tcm_A 182 KDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETS 222 (500)
T ss_dssp TEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHH
T ss_pred CCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHH
Confidence 45899999999999999999999999999866555566653
No 15
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=62.27 E-value=5.9 Score=38.04 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|..+..+++..|.++..+++.+.+ ..+|+
T Consensus 125 gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~ 163 (413)
T 3t18_A 125 GDPLICHDYYWAPYRKICEEFGRNFKTFEFFTDD-FAFNI 163 (413)
T ss_dssp SCEEEEESSCCTHHHHHHHHHTCEEEEECCBCTT-SSBCH
T ss_pred CCEEEECCCCcccHHHHHHHhCCeEEEeeccCCC-CCcCH
Confidence 4689999999999999999999999999986543 45554
No 16
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=66.09 E-value=1.6 Score=41.83 Aligned_cols=17 Identities=18% Similarity=-0.056 Sum_probs=12.0
Q ss_pred eccccccCCCceeeeec
Q 042911 221 VESRWTLEGGGFHLSHF 237 (470)
Q Consensus 221 gg~g~~gggggr~~~~~ 237 (470)
||.|+.||.||-+++|.
T Consensus 189 ~~~~~~~~~~~~~~~~~ 205 (215)
T 2l6f_A 189 GGSGGSGGSGGSSATRE 205 (215)
Confidence 66777777777766663
No 17
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=47.56 E-value=24 Score=34.84 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=24.0
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCCCCCCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVMGVEEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~g~~ggggsggsi~~~a 218 (470)
+|+||.|...+..++..|. ||. -.|=||-||+||++|
T Consensus 12 ~g~gg~g~~~~~r~~~~~~---ggp--------------~gg~gg~gg~v~~~~ 48 (342)
T 1lnz_A 12 GGDGGNGMVAFRREKYVPK---GGP--------------AGGDGGKGGDVVFEV 48 (342)
T ss_dssp CCCCCCCCCCBCCCSSSCC---CCB--------------CCCCCCCCCCEEEEE
T ss_pred ecCCCCceeeeehhhcccC---CCC--------------CCCCCCCCCeEEEEe
Confidence 5788888887765444111 111 145588999999999
No 18
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=52.86 E-value=4 Score=39.17 Aligned_cols=25 Identities=52% Similarity=0.961 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcee
Q 042911 150 PPQTSGTPQGIEGGSGGHGGRGACC 174 (470)
Q Consensus 150 p~gtsg~p~g~~G~GGGHGGrGa~c 174 (470)
|+..|...+|+.|+-|||||.||++
T Consensus 174 ~psg~~~~~~~~~~~~~~~~~~~~~ 198 (215)
T 2l6f_A 174 PPSGSGSGSGGSGGSGGSGGSGGSG 198 (215)
Confidence 3344444555666666666666665
No 19
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=45.51 E-value=14 Score=34.85 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec----ccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY----YDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY----yD~~T~~LDf 468 (470)
-.+|++++|+|..+..+++..|.++..+++ ++.++..+|+
T Consensus 126 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~ 169 (407)
T 3nra_A 126 GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDL 169 (407)
T ss_dssp TCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCH
T ss_pred CCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCH
Confidence 568999999999999999999999998887 2234455554
No 20
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=43.62 E-value=26 Score=33.09 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=31.4
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
.+|.+++|+|..+..+++..|.++..++. +++...+|+
T Consensus 125 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~ 162 (398)
T 3ele_A 125 DEFITIAPYFPEYKVFVNAAGARLVEVPA-DTEHFQIDF 162 (398)
T ss_dssp CEEEEESSCCTHHHHHHHHTTCEEEEECC-CTTTSSCCH
T ss_pred CEEEEeCCCchhhHHHHHHcCCEEEEEec-CCcCCcCCH
Confidence 58999999999999999999999999887 433445554
No 21
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=43.30 E-value=17 Score=36.91 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=31.4
Q ss_pred eEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 431 TIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 431 tVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
+|++++|+|+.+..+++..|.++..|+......-.+|+
T Consensus 183 ~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~ 220 (498)
T 3ihj_A 183 GVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNV 220 (498)
T ss_dssp EEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCH
T ss_pred EEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCH
Confidence 89999999999999999999999999875433345554
No 22
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=41.18 E-value=15 Score=34.71 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=31.8
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
.+|.+++|+|..+...++..|.++..+++ +.+...+|++
T Consensus 121 d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~ 159 (396)
T 3jtx_A 121 PAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWR 159 (396)
T ss_dssp CEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGG
T ss_pred CEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHH
Confidence 48999999999999999999999999988 5444445543
No 23
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=35.80 E-value=24 Score=32.95 Aligned_cols=30 Identities=7% Similarity=-0.064 Sum_probs=27.7
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+..+++..|.++..+++
T Consensus 106 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~ 135 (365)
T 3get_A 106 KNAFLQAGVTFAMYEIYAKQCGAKCYKTQS 135 (365)
T ss_dssp TCEEEECSSCCTHHHHHHHHHTCEEEECSS
T ss_pred CCEEEEeCCChHHHHHHHHHcCCEEEEEec
Confidence 568999999999999999999999999887
No 24
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Probab=35.75 E-value=99 Score=27.24 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=41.1
Q ss_pred EeeeeeeCCceEEEccceEEEccCcEEecCCCCceEEEeceecEEEeeceeEEEeEEEE-EEEEEEEcCCceEe
Q 042911 69 IVSDLNLRRDVYISGKGNFEILTGVKFNCPVSGCSIAVNISGNFSLAVNSSIVSGTFEL-VAQNASFLNGSAVN 141 (470)
Q Consensus 69 ~~~~~~~~~~~~i~g~g~l~i~~~v~l~C~~~gC~i~vN~Sg~ftL~~~~~iv~Gsv~~-~A~nvtv~~~g~Is 141 (470)
+...+.+...++|.+.+++.|-+++.+ .++|.| .++.+++.++.|-.++++. ...+++|.++-.|.
T Consensus 35 ig~~~~I~~~~~i~~~~~v~IG~~~~I---~~~~~I----~~~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig 101 (205)
T 3vbi_A 35 VGKNVLISKKASIYNPGVISIGNNVRI---DDFCIL----SGKVTIGSYSHIAAYTALYGGEVGIEMYDFANIS 101 (205)
T ss_dssp ECSSEEEBTTSEEESGGGEEECSSEEE---CTTCEE----EEEEEECSSEEECTTCEEEEEEEEEEECTTCEEC
T ss_pred ECCCCEECCCeEEccCCeeEECCCCEE---CCCCEE----ccceEECCCCEECCCeEEEcCCccEEECCCCEEC
Confidence 445566667777888788888888877 446766 3566777766655555443 22345555554443
No 25
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=31.27 E-value=38 Score=34.54 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=23.3
Q ss_pred CCCCCCCceeeccCCcCCCcccCccccccCcccccCCC-CC-CCCCCCCCcEEEEE
Q 042911 165 GGHGGRGACCLVDESKLPEDVWGGDAYSWSSCRSLGVM-GV-EEGPPARSSTMVVV 218 (470)
Q Consensus 165 GGHGGrGa~c~~~~~~~~~d~~GGd~Ygw~~L~~~gs~-g~-~ggggsggsi~~~a 218 (470)
+|+||.|...+..++. -.+ |. .|=||-||+||++|
T Consensus 12 ~g~gg~g~~~f~re~~-------------------~~~ggp~gg~gg~gg~v~~~~ 48 (416)
T 1udx_A 12 AGRGGDGAVSFRREKF-------------------VPKGGPDGGDGGRGGSVYLRA 48 (416)
T ss_dssp CCCCCCCCCCBCCBTT-------------------BSCCCBCCCCCCCCCCEEEEE
T ss_pred ecCCCCceeeeecccc-------------------ccCCCCCCCCCCCCCeEEEEe
Confidence 5778888777654333 222 22 45588999999998
No 26
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=28.94 E-value=35 Score=32.85 Aligned_cols=39 Identities=28% Similarity=0.593 Sum_probs=31.1
Q ss_pred CCeEEecCCCCCChHHHHhh-cCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTL-AGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~-AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|..+..+++. .|.++..+++-+.+ ..+|+
T Consensus 137 gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~ 176 (430)
T 2x5f_A 137 DDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTT 176 (430)
T ss_dssp TCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCS
T ss_pred CCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCH
Confidence 46799999999999999999 99999888874322 34554
No 27
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=27.73 E-value=51 Score=31.93 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=23.0
Q ss_pred cCCCeEEecCCCCCChHHHHhhcCCe
Q 042911 427 TISRTIYIPQPTWGNHPKVFTLAGLS 452 (470)
Q Consensus 427 tVTVtVyIsdPTW~NH~~IFq~AGf~ 452 (470)
..-.+|++++|+|.+|..+++.+|.+
T Consensus 153 ~~gd~Vl~~~p~~~~~~~~~~~~g~~ 178 (449)
T 3qgu_A 153 GSKPTVAVQDPSYPVYVDTSVMMGMT 178 (449)
T ss_dssp CSSSCEEEEESCCTHHHHHHHHHTCS
T ss_pred CCCCEEEEcCCCChhHHHHHHHcCCc
Confidence 33568999999999999999999988
No 28
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=27.43 E-value=42 Score=31.69 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|..+..+++..|.++..+++-
T Consensus 115 gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~ 145 (391)
T 3h14_A 115 GDRVGIGAPGYPSYRQILRALGLVPVDLPTA 145 (391)
T ss_dssp TCEEEEEESCCHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEcCCCCccHHHHHHHcCCEEEEeecC
Confidence 4689999999999999999999999998874
No 29
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=27.33 E-value=65 Score=30.47 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccCC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNFH 469 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDfd 469 (470)
-.+|++++|+|..+...++..|.++..++. |+++..+|++
T Consensus 96 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~ 135 (391)
T 3dr4_A 96 GDEVIVPSLTYIASANSVTYCGATPVLVDN-DPRTFNLDAA 135 (391)
T ss_dssp TCEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCGG
T ss_pred cCEEEECCCchHHHHHHHHHCCCEEEEEec-CccccCcCHH
Confidence 468999999999999999999999988876 4445556643
No 30
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=26.97 E-value=65 Score=31.08 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|..+...++..|+++..++. ++++..+|+
T Consensus 90 gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~ 128 (424)
T 2po3_A 90 TGEVIMPSMTFAATPHALRWIGLTPVFADI-DPDTGNLDP 128 (424)
T ss_dssp CSEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTSSBCH
T ss_pred CCEEEECCCccHHHHHHHHHcCCEEEEEec-CCCcCCcCH
Confidence 468999999999999999999999988876 333444554
No 31
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=25.76 E-value=23 Score=34.00 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=27.7
Q ss_pred CeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 430 RTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 430 VtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
.+|++++|+|.++..+++.+|.++..+++-
T Consensus 125 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 154 (423)
T 3ez1_A 125 PKMIVTVPGYDRHFLLLQTLGFELLTVDMQ 154 (423)
T ss_dssp CEEEEEESCCHHHHHHHHHHTCEEEEEEEE
T ss_pred CEEEEcCCCcHHHHHHHHHcCCEEEeccCC
Confidence 689999999999999999999999988874
No 32
>3a1m_A Chimera of thrombin cleavage site, tail-associate lysozyme, fibritin; bacteriophage T4, antimicrobial, bacteriolytic enzyme, glyco hydrolase; 2.00A {Synthetic}
Probab=25.59 E-value=3e+02 Score=24.71 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=38.1
Q ss_pred eEEEccceEEEccCcEEecCCCCceE------EEeceecEEEeecee---EEEeEEEEEEEEEEEcCCceEeccc
Q 042911 79 VYISGKGNFEILTGVKFNCPVSGCSI------AVNISGNFSLAVNSS---IVSGTFELVAQNASFLNGSAVNTTG 144 (470)
Q Consensus 79 ~~i~g~g~l~i~~~v~l~C~~~gC~i------~vN~Sg~ftL~~~~~---iv~Gsv~~~A~nvtv~~~g~Isatg 144 (470)
+.|.|+-+..+.-++...= ...+.. +.++++++++.+.-. -|.|+....+.+++....|+.+.+|
T Consensus 22 itVkGNrTitV~GN~titV-gGN~t~tV~GN~t~tV~GN~tltVgG~~t~tVgGt~~~~~~s~s~~asG~y~i~g 95 (139)
T 3a1m_A 22 ILVKGNVTIIVEGNADITV-KGDATTLVEGNQTNTVNGNLSWKVAGTVDWDVGGDWTEKMASMSSISSGQYTIDG 95 (139)
T ss_dssp EEEESBEEEEESSCEEEEE-SSCEEEEESSCEEEEESSCEEEEESSCEEEEESSEEEEEESEEEEEESSEEEEEC
T ss_pred EEEeCCceEEecCceeEEe-cCCeEEEecCCEEEEECCeEEEEEcCcEEEEeccchhhcccccccccCCeEEeec
Confidence 4555554444444444333 223333 345666666666222 6778855788888888888777766
No 33
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=25.43 E-value=64 Score=29.49 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=27.2
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|.+++|+|..+...++..|.++..++.
T Consensus 90 gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~ 119 (337)
T 3p1t_A 90 SMRFVTAWPGFDGYRARIAVSGLRHFEIGL 119 (337)
T ss_dssp TSEEEEESSSCSHHHHHHTTSCCEEEEECB
T ss_pred CCeEEEeCCCcHHHHHHHHHcCCEEEEecC
Confidence 568999999999999999999999988876
No 34
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=25.20 E-value=49 Score=31.44 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=27.6
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|..+..+++..|.++..++.-
T Consensus 115 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 145 (385)
T 1b5p_A 115 GDEVIVLSPYWVSYPEMVRFAGGVVVEVETL 145 (385)
T ss_dssp TCEEEEEESCCTHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEcCCCchhHHHHHHHcCCEEEEeecC
Confidence 4579999999999999999999999888863
No 35
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=24.69 E-value=65 Score=30.05 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|..+...++..|.++..+++-
T Consensus 114 gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 144 (391)
T 4dq6_A 114 NDKIMIQEPVYSPFNSVVKNNNRELIISPLQ 144 (391)
T ss_dssp TCEEEECSSCCTHHHHHHHHTTCEEEECCCE
T ss_pred CCEEEEcCCCCHHHHHHHHHcCCeEEeeeee
Confidence 4689999999999999999999999888874
No 36
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=24.34 E-value=36 Score=32.94 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=25.5
Q ss_pred eEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 431 TIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 431 tVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
+|++++|+|.++..+++.+|.++..|+.
T Consensus 121 ~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 148 (391)
T 3bwn_A 121 SVVAAAPFYSTYVEETTYVRSGMYKWEG 148 (391)
T ss_dssp EEEECSSCCTHHHHHHHTTCBTTEEEEE
T ss_pred eEEEcCCCchhHHHHHHHcCCeEEEecC
Confidence 7999999999999999999999877764
No 37
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=24.31 E-value=31 Score=33.35 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=28.0
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|++++|+|..+..+++.+|.++..++.-
T Consensus 133 gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~ 163 (427)
T 3ppl_A 133 TVKWICPVPGYDRHFSITERFGFEMISVPMN 163 (427)
T ss_dssp CCEEEEEESCCHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEcCCCcHHHHHHHHHcCCEEEEeCCC
Confidence 3689999999999999999999999988873
No 38
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=23.02 E-value=22 Score=30.82 Aligned_cols=19 Identities=5% Similarity=-0.176 Sum_probs=12.3
Q ss_pred eEEEEEEEEEEEcCCceEe
Q 042911 123 GTFELVAQNASFLNGSAVN 141 (470)
Q Consensus 123 Gsv~~~A~nvtv~~~g~Is 141 (470)
.++.|+.+|+..++.++--
T Consensus 80 ~~~sL~I~~lq~~Dsg~Y~ 98 (149)
T 3u6r_H 80 STAYMELSSLRSEDTAVYF 98 (149)
T ss_dssp TEEEEEECSCCGGGCEEEE
T ss_pred CEEEEEECCCChhhCEEEE
Confidence 3455677777777776554
No 39
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=22.74 E-value=75 Score=29.87 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=27.0
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeec
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRY 458 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpY 458 (470)
-.+|++++|+|..+...++..|.++..++.
T Consensus 115 gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~ 144 (386)
T 1u08_A 115 GDEVICFDPSYDSYAPAIALSGGIVKRMAL 144 (386)
T ss_dssp TCEEEEEESCCTTHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEeCCCchhHHHHHHHcCCEEEEeec
Confidence 458999999999999999999999888876
No 40
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=21.37 E-value=23 Score=36.32 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=31.8
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeeccc--CCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYD--PATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD--~~T~~LDf 468 (470)
-.+|++++|+|..+..+++.+|.++..+++.. ..+..+|+
T Consensus 193 gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~ 234 (533)
T 3f6t_A 193 GDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEP 234 (533)
T ss_dssp TCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECH
T ss_pred cCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCH
Confidence 46899999999999999999999998888754 33444443
No 41
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=20.84 E-value=52 Score=31.09 Aligned_cols=31 Identities=13% Similarity=0.092 Sum_probs=27.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|.+++|+|..+..+++..|.++..+++.
T Consensus 109 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 139 (410)
T 3e2y_A 109 GDEVIIMVPFYDCYEPMVRMAGAVPVFIPLR 139 (410)
T ss_dssp TCEEEEEESCCTTHHHHHHHTTCEEEEEECE
T ss_pred CCEEEEeCCCchhhHHHHHHcCCEEEEEecc
Confidence 4679999999999999999999998888774
No 42
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=20.83 E-value=65 Score=30.64 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=27.9
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecc
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYY 459 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYy 459 (470)
-.+|++++|+|..+..+++..|.++..+++.
T Consensus 115 gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 145 (422)
T 3fvs_A 115 GDEVIIIEPFFDCYEPMTMMAGGRPVFVSLK 145 (422)
T ss_dssp TCEEEEEESCCTTHHHHHHHTTCEEEEEECB
T ss_pred CCEEEEcCCCchhhHHHHHHcCCEEEEEecc
Confidence 4679999999999999999999999888874
No 43
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=20.72 E-value=83 Score=29.29 Aligned_cols=38 Identities=8% Similarity=-0.105 Sum_probs=31.0
Q ss_pred CCeEEecCCCCCChHHHHhhcCCeeeeeecccCCCCCccC
Q 042911 429 SRTIYIPQPTWGNHPKVFTLAGLSVKSYRYYDPATRGLNF 468 (470)
Q Consensus 429 TVtVyIsdPTW~NH~~IFq~AGf~V~eYpYyD~~T~~LDf 468 (470)
-.+|++++|+|..+...++..|+++..++.- ++..+|+
T Consensus 78 gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~ 115 (374)
T 3uwc_A 78 GDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDP 115 (374)
T ss_dssp TCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCG
T ss_pred CCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCH
Confidence 4689999999999999999999999888774 3444554
Done!