BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042915
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWI 465
+D+ +SG +P+ IG++ L L LG N + G IP E+ L L L L +N+ +G I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 466 PQTLSQLPILREIFLQNNNLDGQIPD 491
PQ +S L +L EI L NNNL G IP+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLE 457
S + +VS+ L +SGT+P S+G+L+ L+ L+L N L G+IP E+ + LETL L+
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
N G IP LS L I L NN L G+IP
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 396 CNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETL 454
C K+T + + L+ +G +P ++ N + L L L N L G IP + +L+ L L
Sbjct: 389 CQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 455 HLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
L N EG IPQ L + L + L N+L G+IP GL
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 413 EISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQ 471
+++G +P + N T L + L N+L G+IP+ + L L L L NN F G IP L
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 472 LPILREIFLQNNNLDGQIPDGLWK 495
L + L N +G IP ++K
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 407 IDLKGFEISGTLPESIGNLTA---------------------------LKHLRLGGNKLW 439
+DL E SG LPES+ NL+A L+ L L N
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 440 GQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
G+IP + + L +LHL N G IP +L L LR++ L N L+G+IP L
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 422 IGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPI--LREI 478
+G+ +AL+HL + GNKL G + T T L+ L++ +NQF G IP LP+ L+ +
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQYL 274
Query: 479 FLQNNNLDGQIPD 491
L N G+IPD
Sbjct: 275 SLAENKFTGEIPD 287
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 31/117 (26%)
Query: 404 VVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTL---TALETLHLENNQ 460
+ +DL G G +P G+ + L+ L L N G++P M TL L+ L L N+
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNE 354
Query: 461 FEGWIPQTLSQL----------------PI-----------LREIFLQNNNLDGQIP 490
F G +P++L+ L PI L+E++LQNN G+IP
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 427 ALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
++ L + N L G IP E+ ++ L L+L +N G IP + L L + L +N L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 486 DGQIPDGL 493
DG+IP +
Sbjct: 693 DGRIPQAM 700
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 32/126 (25%)
Query: 396 CNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLH 455
C+ +H +D+ G ++SG +I T LK L + N+ G IP + L +L+ L
Sbjct: 222 CSALQH-----LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLS 275
Query: 456 LENNQFEGWIPQ-------TLSQLPILREIFL------------------QNNNLDGQIP 490
L N+F G IP TL+ L + F +NN G++P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 491 -DGLWK 495
D L K
Sbjct: 336 MDTLLK 341
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM 445
+DL ++ G +P+++ LT L + L N L G IPEM
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 407 IDLKGFEISGT------LPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQ 460
+DL ISG L + G LKHL + GNK+ G + ++ LE L + +N
Sbjct: 156 LDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNN 211
Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQ 488
F IP L L+ + + N L G
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGD 238
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWI 465
+D+ +SG +P+ IG++ L L LG N + G IP E+ L L L L +N+ +G I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 466 PQTLSQLPILREIFLQNNNLDGQIPD 491
PQ +S L +L EI L NNNL G IP+
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLE 457
S + +VS+ L +SGT+P S+G+L+ L+ L+L N L G+IP E+ + LETL L+
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 458 NNQFEGWIPQTLSQLPILREIFLQNNNLDGQIP 490
N G IP LS L I L NN L G+IP
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 396 CNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETL 454
C K+T + + L+ +G +P ++ N + L L L N L G IP + +L+ L L
Sbjct: 386 CQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 455 HLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
L N EG IPQ L + L + L N+L G+IP GL
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 483
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 413 EISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQ 471
+++G +P + N T L + L N+L G+IP+ + L L L L NN F G IP L
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 472 LPILREIFLQNNNLDGQIPDGLWK 495
L + L N +G IP ++K
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 28/116 (24%)
Query: 407 IDLKGFEISGTLPESIGNLTA---------------------------LKHLRLGGNKLW 439
+DL E SG LPES+ NL+A L+ L L N
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 440 GQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494
G+IP + + L +LHL N G IP +L L LR++ L N L+G+IP L
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 422 IGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPI--LREI 478
+G+ +AL+HL + GNKL G + T T L+ L++ +NQF G IP LP+ L+ +
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQYL 271
Query: 479 FLQNNNLDGQIPD 491
L N G+IPD
Sbjct: 272 SLAENKFTGEIPD 284
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 31/117 (26%)
Query: 404 VVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTL---TALETLHLENNQ 460
+ +DL G G +P G+ + L+ L L N G++P M TL L+ L L N+
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNE 351
Query: 461 FEGWIPQTLSQL----------------PI-----------LREIFLQNNNLDGQIP 490
F G +P++L+ L PI L+E++LQNN G+IP
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 427 ALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
++ L + N L G IP E+ ++ L L+L +N G IP + L L + L +N L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 486 DGQIPDGL 493
DG+IP +
Sbjct: 690 DGRIPQAM 697
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 32/126 (25%)
Query: 396 CNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLH 455
C+ +H +D+ G ++SG +I T LK L + N+ G IP + L +L+ L
Sbjct: 219 CSALQH-----LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLS 272
Query: 456 LENNQFEGWIPQ-------TLSQLPILREIFL------------------QNNNLDGQIP 490
L N+F G IP TL+ L + F +NN G++P
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 491 -DGLWK 495
D L K
Sbjct: 333 MDTLLK 338
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM 445
+DL ++ G +P+++ LT L + L N L G IPEM
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 407 IDLKGFEISGT------LPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQ 460
+DL ISG L + G LKHL + GNK+ G + ++ LE L + +N
Sbjct: 153 LDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNN 208
Query: 461 FEGWIPQTLSQLPILREIFLQNNNLDGQ 488
F IP L L+ + + N L G
Sbjct: 209 FSTGIP-FLGDCSALQHLDISGNKLSGD 235
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 359 PRDVVAMEELAKHFKNPPI--DW--NGDPCLPWENSWTGVTCNKSKHT-RVVSIDLKGFE 413
P+D A+ ++ K NP W D C +W GV C+ T RV ++DL G
Sbjct: 5 PQDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 414 ISGT--LPESIGNLTALKHLRLGG-NKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTL 469
+ +P S+ NL L L +GG N L G IP + LT L L++ + G IP L
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 470 SQLPILREIFLQNNNLDGQIP 490
SQ+ L + N L G +P
Sbjct: 122 SQIKTLVTLDFSYNALSGTLP 142
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%)
Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIP 466
+DL + G G+ + + L N L + ++ L L L NN+ G +P
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 467 QTLSQLPILREIFLQNNNLDGQIPDG 492
Q L+QL L + + NNL G+IP G
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALET-LHL 456
S+ +V++D +SGTLP SI +L L + GN++ G IP+ + + L T + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDG 487
N+ G IP T + L L + L N L+G
Sbjct: 182 SRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQ 460
+DL+ I GTLP+ + L L L + N L G+IP+ L + NN+
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 13/90 (14%)
Query: 358 FPRDVVAMEEL--AKHFKN---------PPIDWNGDPCLPWENSWTGVTCNKSKHTRVVS 406
+ +D +A++E+ A + KN P +WN + L + GV+ N + RV
Sbjct: 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDXWGAQPGVSLNS--NGRVTG 85
Query: 407 IDLKGFEISGTLPESIGNLTALKHLRLGGN 436
+ L+GF SG +P++IG LT L+ L LG +
Sbjct: 86 LSLEGFGASGRVPDAIGQLTELEVLALGSH 115
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
+ I L +++L LGGNKL I +K LT L L L NQ + +L L+E+
Sbjct: 57 QGIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 480 LQNNNLDGQIPDGLWKPGLNI 500
L N L +PDG++ N+
Sbjct: 116 LVENQLQS-LPDGVFDKLTNL 135
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
+LP+ + LT L +L L N+L +P+ LT L L L+NNQ + +L
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 474 ILREIFLQNNNLDGQIPDGLW 494
L+++ L +N L +PDG++
Sbjct: 182 QLKQLSLNDNQLKS-VPDGVF 201
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 420 ESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479
+ I L +++L LGGNKL I +K LT L L L NQ + +L L+E+
Sbjct: 57 QGIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115
Query: 480 LQNNNLDGQIPDGLWKPGLNI 500
L N L +PDG++ N+
Sbjct: 116 LVENQLQS-LPDGVFDKLTNL 135
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQTLSQLP 473
+LP + LT+L L LGGNKL +P LT+L L+L NQ + +L
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 474 ILREIFLQNNNLDGQIPDGLW 494
L+E+ L N L +PDG++
Sbjct: 101 QLKELALNTNQLQS-LPDGVF 120
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 411 GFEISGTLPESI-GNLTALKHLRLGGNKLWGQIPE--MKTLTALETLHLENNQFEGWIPQ 467
G+ +LP+ + LT+LK LRL N+L ++PE LT L+TL L+NNQ +
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199
Query: 468 TLSQLPILREIFLQNN 483
L L+ + LQ N
Sbjct: 200 AFDSLEKLKMLQLQEN 215
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 389 NSWTGVTCNKSKHTRVVS--------IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWG 440
N+ V C+ K T + S +DL+ ++S ++ LT L+ L L NKL
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ- 74
Query: 441 QIPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
+P K L LETL + +N+ + QL L E+ L N L
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 425 LTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
L L LRL N+L P + +LT L L L N+ + +L L+E+ L NN
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 484 NLDGQIPDG 492
L ++P+G
Sbjct: 168 QLK-RVPEG 175
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
T + +DL +IS P + LT L L+LG N++ I + LTAL L L NQ
Sbjct: 239 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQL 295
Query: 462 EGWIP 466
E P
Sbjct: 296 EDISP 300
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
T + +DL +IS P + LT L L+LG N++ I + LTAL L L NQ
Sbjct: 239 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQL 295
Query: 462 EGWIP 466
E P
Sbjct: 296 EDISP 300
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
T + +DL +IS P + LT L L+LG N++ I + LTAL L L NQ
Sbjct: 239 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQL 295
Query: 462 EGWIP 466
E P
Sbjct: 296 EDISP 300
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
T + +DL +IS P + LT L L+LG N++ I + LTAL L L NQ
Sbjct: 238 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQL 294
Query: 462 EGWIP 466
E P
Sbjct: 295 EDISP 299
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
T + +DL +IS P + LT L L+LG N++ I + LTAL L L NQ
Sbjct: 238 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQL 294
Query: 462 EGWIP 466
E P
Sbjct: 295 EDISP 299
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
T + +DL +IS P + LT L L+LG N++ I + LTAL L L NQ
Sbjct: 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQL 299
Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
E P +S L L + L NN+
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNI 321
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
T + +DL +IS P + LT L L+LG N++ I + LTAL L L NQ
Sbjct: 242 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQL 298
Query: 462 EGWIP 466
E P
Sbjct: 299 EDISP 303
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 390 SWTGVTCNKSKHTRVVS--------IDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ 441
S T V C +H V + + L +I+ P +L LK L LG N+L G
Sbjct: 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GA 78
Query: 442 IPE--MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWK 495
+P +LT L L L NQ +L L+E+F+ N L ++P G+ +
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER 133
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L++L L+ ++L N
Sbjct: 130 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 484 NL 485
++
Sbjct: 187 HI 188
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 129 HLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185
Query: 484 NL 485
++
Sbjct: 186 HI 187
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 132 HLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 484 NL 485
++
Sbjct: 189 HI 190
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 386 PWENS------WTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLW 439
P ENS + G+ N + R+ L G I LPE+ L L L NK+
Sbjct: 158 PLENSGFEPGAFDGLKLN---YLRISEAKLTG--IPKDLPET------LNELHLDHNKIQ 206
Query: 440 G-QIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493
++ ++ + L L L +NQ +LS LP LRE+ L NN L ++P GL
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGL 260
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 132 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 484 NL 485
++
Sbjct: 189 HI 190
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 130 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 484 NL 485
++
Sbjct: 187 HI 188
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 152 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 484 NL 485
++
Sbjct: 209 HI 210
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 127 HLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 484 NL 485
++
Sbjct: 184 HI 185
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 150 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 484 NL 485
++
Sbjct: 207 HI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 150 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 484 NL 485
++
Sbjct: 207 HI 208
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 127 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 484 NL 485
++
Sbjct: 184 HI 185
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483
+L L+ L LG NK+ I + LT L+TL LE+NQ +P L+ L L+ ++L N
Sbjct: 150 HLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 484 NL 485
++
Sbjct: 207 HI 208
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
RV+ + K + L + L + HL L N+L P + L LE L +N
Sbjct: 443 VRVLHLAHKDLTVLCHLEQ----LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
E ++ LP L+E+ L NN L
Sbjct: 499 EN--VDGVANLPRLQELLLCNNRL 520
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQF 461
RV+ + K + L + L + HL L N+L P + L LE L +N
Sbjct: 443 VRVLHLAHKDLTVLCHLEQ----LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL 498
Query: 462 EGWIPQTLSQLPILREIFLQNNNL 485
E ++ LP L+E+ L NN L
Sbjct: 499 EN--VDGVANLPRLQELLLCNNRL 520
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLG 434
RV + L GF G +P++IG LT LK L G
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFG 355
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQF 461
+V ++LK +++G P + + ++ L+LG NK+ +M L L+TL+L +NQ
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 462 EGWIPQTLSQLPILREIFLQNN 483
+P + L L + L +N
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASN 136
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480
++ +LT LK L +G N++ I + L+ L +L L NNQ + + L L +FL
Sbjct: 260 AVKDLTKLKXLNVGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFL 318
Query: 481 QNNNL 485
N++
Sbjct: 319 SQNHI 323
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 422 IGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481
+ LT L++L +G ++ P + L+ L TL ++N+ P L+ LP L E+ L+
Sbjct: 147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLK 203
Query: 482 NNNLDGQIP 490
NN + P
Sbjct: 204 NNQISDVSP 212
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 427 ALKHLRLGGNKLWG-QIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
+L L L GNK+ +K L L L L N +L+ P LRE+ L NN L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 486 DGQIPDGL 493
++P GL
Sbjct: 253 V-KVPGGL 259
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLT 449
S T + + +K T+V + LKG L S +++A+ N P ++ L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANTPHLREL- 245
Query: 450 ALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ 501
HL NN+ +P L+ ++ ++L NNN+ + PG N +
Sbjct: 246 -----HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 427 ALKHLRLGGNKLWG-QIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485
+L L L GNK+ +K L L L L N +L+ P LRE+ L NN L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 486 DGQIPDGL 493
++P GL
Sbjct: 253 V-KVPGGL 259
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLT 449
S T + + +K T+V + LKG L S +++A+ N P ++ L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD------NGSLANTPHLREL- 245
Query: 450 ALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLWKPGLNIQ 501
HL NN+ +P L+ ++ ++L NNN+ + PG N +
Sbjct: 246 -----HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENNQFEGWIPQTLSQLP 473
+LP + LT LK LRL N+L IP LT L+TL L NQ + +L
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 474 ILREIFLQNNNLDGQIPDGLW 494
L+ I L N D + L+
Sbjct: 180 KLQTITLFGNQFDCSRCETLY 200
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 424 NLTALKHLRLGGNKLWGQ-IPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482
+LT L L L N+L + LT L+ L+L NQ + +L L+E+ L
Sbjct: 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140
Query: 483 NNLDGQIPDGLWKPGLNIQ 501
N L IP G + N+Q
Sbjct: 141 NQLQ-SIPAGAFDKLTNLQ 158
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 409 LKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI--PEMKTLTALETLHLENNQFEGWIP 466
L ++G + LT L+ L L N + + L L TLHL+ + P
Sbjct: 62 LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP 121
Query: 467 QTLSQLPILREIFLQNNNLDGQIPDGLWK 495
L L+ ++LQ+NNL +PD ++
Sbjct: 122 GLFRGLAALQYLYLQDNNLQA-LPDNTFR 149
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 417 TLPESI-GNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENNQFEGWIPQTLSQLP 473
+LP + LT LK LRL N+L IP LT L+TL L NQ + +L
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 474 ILREIFLQNNNLD 486
L+ I L N D
Sbjct: 180 KLQTITLFGNQFD 192
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%)
Query: 44 LKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRXXXX 103
++FL + D F T PGLL +ST + ++ N+ G++YL
Sbjct: 349 MRFLYENDADFAAIPTFFVLPGLLLQMSTDKLLSKALPNSQVDFSNILHGEQYLEIVDDL 408
Query: 104 XXXXXXXXQPPVFDQIIGGTKWSIVDTAEDF 134
VFD + G+ +V +E F
Sbjct: 409 PTSGTLLTNGKVFDVMDKGSGAVVVTNSESF 439
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 210 DDLFNRKWNSFKDLNPVEENKNKVNPEDFWNKPPAKAFL-----SSITTTKGKPLQI-QW 263
+DL+++ +F+D NKN+ DFW P + L IT T G + + QW
Sbjct: 333 NDLYDKDSQNFEDRYKRASNKNQWEQIDFW--KPIQDLLDKWSGGGITVTPGGYVFLNQW 390
Query: 264 PPGPLPNSRYYIALYFQENRAPSPESW 290
+ IAL + ++ +P +
Sbjct: 391 GSARYNTAAQLIALVYDKHHGDTPSKY 417
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,266,946
Number of Sequences: 62578
Number of extensions: 714658
Number of successful extensions: 1527
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 120
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)