Query 042915
Match_columns 501
No_of_seqs 425 out of 2640
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 10:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 1.6E-87 3.6E-92 734.7 45.4 464 25-494 22-511 (623)
2 PF12819 Malectin_like: Carboh 100.0 1.3E-71 2.9E-76 568.4 32.3 314 31-350 1-347 (347)
3 PLN03150 hypothetical protein; 99.8 2.6E-17 5.7E-22 181.0 19.4 92 400-491 440-533 (623)
4 PLN00113 leucine-rich repeat r 99.3 5.8E-12 1.3E-16 146.3 12.2 138 355-498 24-190 (968)
5 PF11721 Malectin: Di-glucose 99.1 4.6E-10 1E-14 103.9 9.1 140 29-172 3-174 (174)
6 PF11721 Malectin: Di-glucose 99.0 1.7E-10 3.6E-15 106.9 2.9 108 195-310 2-123 (174)
7 PLN00113 leucine-rich repeat r 99.0 4.5E-10 9.9E-15 130.6 6.8 93 400-492 497-590 (968)
8 KOG0617 Ras suppressor protein 98.8 7.7E-11 1.7E-15 105.7 -5.0 153 327-494 37-193 (264)
9 KOG0617 Ras suppressor protein 98.8 2E-10 4.3E-15 103.1 -3.5 105 390-497 67-174 (264)
10 KOG0444 Cytoskeletal regulator 98.7 7.6E-10 1.6E-14 116.1 -2.5 150 337-499 213-365 (1255)
11 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.4E-13 76.7 3.3 60 426-485 1-61 (61)
12 PF13855 LRR_8: Leucine rich r 98.5 3.4E-08 7.4E-13 74.8 2.3 60 402-461 1-61 (61)
13 KOG0444 Cytoskeletal regulator 98.5 1E-08 2.3E-13 107.7 -0.9 151 323-486 32-186 (1255)
14 KOG0472 Leucine-rich repeat pr 98.4 3.2E-08 7E-13 99.5 -2.1 102 389-494 193-295 (565)
15 PF14580 LRR_9: Leucine-rich r 98.3 3E-07 6.6E-12 84.8 3.3 85 400-486 40-126 (175)
16 KOG0472 Leucine-rich repeat pr 98.3 1.1E-07 2.3E-12 95.8 -1.1 90 401-494 434-547 (565)
17 KOG4194 Membrane glycoprotein 98.3 9.7E-08 2.1E-12 100.0 -1.5 94 401-494 340-437 (873)
18 PF14580 LRR_9: Leucine-rich r 98.2 5.6E-07 1.2E-11 83.1 2.7 82 401-486 18-101 (175)
19 KOG4237 Extracellular matrix p 98.2 1.8E-07 3.9E-12 94.1 -2.4 104 394-498 51-166 (498)
20 KOG4194 Membrane glycoprotein 98.2 1.1E-06 2.4E-11 92.3 3.1 86 401-486 148-234 (873)
21 KOG0618 Serine/threonine phosp 98.1 4.7E-07 1E-11 99.5 -1.8 84 401-486 382-465 (1081)
22 PF12819 Malectin_like: Carboh 98.0 4.6E-05 9.9E-10 78.4 12.4 146 30-177 182-347 (347)
23 PLN03210 Resistant to P. syrin 98.0 1.9E-05 4.1E-10 93.6 9.1 93 401-494 610-702 (1153)
24 PRK15387 E3 ubiquitin-protein 97.9 5.8E-06 1.3E-10 92.5 3.5 84 402-493 382-465 (788)
25 PF12799 LRR_4: Leucine Rich r 97.9 9E-06 2E-10 57.3 3.1 36 450-486 2-37 (44)
26 KOG4237 Extracellular matrix p 97.9 3.7E-06 8.1E-11 84.8 1.0 89 398-486 270-359 (498)
27 KOG0532 Leucine-rich repeat (L 97.8 1.5E-06 3.3E-11 91.1 -2.5 96 395-494 159-254 (722)
28 KOG4579 Leucine-rich repeat (L 97.8 1.8E-06 3.9E-11 75.2 -2.2 93 400-494 51-143 (177)
29 KOG1259 Nischarin, modulator o 97.8 8E-06 1.7E-10 79.7 1.2 82 401-486 306-387 (490)
30 KOG0532 Leucine-rich repeat (L 97.8 2.6E-06 5.6E-11 89.4 -2.5 93 403-499 144-237 (722)
31 PRK15370 E3 ubiquitin-protein 97.7 4.1E-05 9E-10 86.0 6.3 82 403-493 221-302 (754)
32 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.9E-10 54.8 2.8 37 426-462 1-37 (44)
33 PLN03210 Resistant to P. syrin 97.7 7.5E-05 1.6E-09 88.6 7.4 91 402-494 778-890 (1153)
34 PRK15370 E3 ubiquitin-protein 97.7 6.9E-05 1.5E-09 84.2 6.6 84 402-494 241-324 (754)
35 KOG0618 Serine/threonine phosp 97.7 1E-05 2.3E-10 89.2 0.0 89 403-494 46-134 (1081)
36 KOG1259 Nischarin, modulator o 97.6 6E-06 1.3E-10 80.6 -1.8 90 399-491 326-416 (490)
37 PRK15387 E3 ubiquitin-protein 97.6 5.6E-05 1.2E-09 84.8 5.0 65 426-498 382-447 (788)
38 COG4886 Leucine-rich repeat (L 97.4 7.6E-05 1.6E-09 78.0 2.7 88 403-493 141-228 (394)
39 KOG4579 Leucine-rich repeat (L 97.4 7.7E-06 1.7E-10 71.4 -3.9 90 402-494 27-120 (177)
40 cd00116 LRR_RI Leucine-rich re 97.4 6.6E-05 1.4E-09 75.6 1.7 86 401-486 164-263 (319)
41 COG4886 Leucine-rich repeat (L 97.3 6.7E-05 1.4E-09 78.4 0.6 85 400-486 161-245 (394)
42 cd00116 LRR_RI Leucine-rich re 97.2 9.2E-05 2E-09 74.5 0.4 86 402-487 108-207 (319)
43 KOG4658 Apoptotic ATPase [Sign 97.2 0.00012 2.7E-09 83.6 1.0 97 402-499 545-645 (889)
44 KOG1859 Leucine-rich repeat pr 97.0 6.7E-05 1.5E-09 81.0 -3.1 81 401-486 186-267 (1096)
45 KOG0531 Protein phosphatase 1, 96.9 0.00043 9.4E-09 73.0 2.4 87 400-491 93-179 (414)
46 KOG4658 Apoptotic ATPase [Sign 96.9 0.00036 7.9E-09 79.8 1.8 86 399-484 568-653 (889)
47 KOG3207 Beta-tubulin folding c 96.6 0.00044 9.5E-09 71.0 -0.7 97 390-486 210-314 (505)
48 KOG1644 U2-associated snRNP A' 96.5 0.0033 7.2E-08 58.6 4.4 81 403-486 43-126 (233)
49 KOG3207 Beta-tubulin folding c 96.5 0.00023 5.1E-09 72.9 -3.4 86 400-486 195-284 (505)
50 KOG0531 Protein phosphatase 1, 96.3 0.0011 2.5E-08 69.9 0.7 87 401-491 71-157 (414)
51 KOG2982 Uncharacterized conser 96.2 0.0011 2.4E-08 65.0 -0.1 97 359-461 60-158 (418)
52 KOG1859 Leucine-rich repeat pr 96.2 0.00035 7.5E-09 75.7 -4.4 80 403-486 165-245 (1096)
53 KOG2739 Leucine-rich acidic nu 96.0 0.005 1.1E-07 59.5 2.9 80 403-486 44-129 (260)
54 PF08263 LRRNT_2: Leucine rich 95.7 0.012 2.6E-07 41.0 3.2 34 359-397 2-43 (43)
55 KOG2739 Leucine-rich acidic nu 95.2 0.012 2.7E-07 56.9 2.7 74 418-494 35-110 (260)
56 KOG1644 U2-associated snRNP A' 95.2 0.019 4.1E-07 53.7 3.6 82 400-482 62-149 (233)
57 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.5E-07 34.2 0.8 18 451-469 2-19 (22)
58 KOG0473 Leucine-rich repeat pr 94.1 0.0017 3.8E-08 61.7 -6.0 86 399-486 39-124 (326)
59 PRK15386 type III secretion pr 94.0 0.085 1.8E-06 55.1 5.6 31 450-483 157-187 (426)
60 PF00560 LRR_1: Leucine Rich R 93.0 0.037 7.9E-07 32.6 0.5 20 474-494 1-20 (22)
61 KOG3665 ZYG-1-like serine/thre 92.7 0.037 8.1E-07 62.0 0.5 88 400-489 171-266 (699)
62 KOG1909 Ran GTPase-activating 91.9 0.031 6.8E-07 56.2 -1.2 85 401-485 212-310 (382)
63 PF13504 LRR_7: Leucine rich r 91.8 0.094 2E-06 28.8 1.2 13 474-486 2-14 (17)
64 smart00369 LRR_TYP Leucine-ric 91.8 0.13 2.8E-06 31.4 1.9 22 472-494 1-22 (26)
65 smart00370 LRR Leucine-rich re 91.8 0.13 2.8E-06 31.4 1.9 22 472-494 1-22 (26)
66 KOG2982 Uncharacterized conser 91.4 0.086 1.9E-06 52.2 1.2 84 402-485 71-158 (418)
67 KOG2123 Uncharacterized conser 91.2 0.011 2.3E-07 57.9 -5.1 78 400-479 39-123 (388)
68 KOG3665 ZYG-1-like serine/thre 90.2 0.11 2.4E-06 58.3 0.8 87 399-486 145-233 (699)
69 PF13306 LRR_5: Leucine rich r 89.2 0.7 1.5E-05 39.5 5.0 76 403-482 36-112 (129)
70 PF13504 LRR_7: Leucine rich r 89.2 0.25 5.5E-06 27.1 1.4 13 450-462 2-14 (17)
71 KOG2123 Uncharacterized conser 88.2 0.031 6.8E-07 54.7 -4.5 87 402-492 19-107 (388)
72 COG5238 RNA1 Ran GTPase-activa 87.5 0.1 2.2E-06 51.0 -1.4 65 421-486 87-170 (388)
73 PF13306 LRR_5: Leucine rich r 87.4 0.65 1.4E-05 39.7 3.6 88 402-494 12-100 (129)
74 PRK15386 type III secretion pr 87.3 0.76 1.6E-05 48.2 4.6 80 402-494 52-135 (426)
75 KOG1909 Ran GTPase-activating 86.9 0.27 5.9E-06 49.7 1.1 85 402-486 185-283 (382)
76 KOG0473 Leucine-rich repeat pr 86.4 0.016 3.5E-07 55.3 -7.4 76 421-498 37-113 (326)
77 smart00370 LRR Leucine-rich re 83.2 0.97 2.1E-05 27.4 2.0 19 448-467 1-19 (26)
78 smart00369 LRR_TYP Leucine-ric 83.2 0.97 2.1E-05 27.4 2.0 19 448-467 1-19 (26)
79 smart00364 LRR_BAC Leucine-ric 79.9 1.2 2.6E-05 27.4 1.4 18 473-491 2-19 (26)
80 COG5238 RNA1 Ran GTPase-activa 72.6 3.6 7.9E-05 40.6 3.3 85 400-486 90-198 (388)
81 smart00365 LRR_SD22 Leucine-ri 66.0 4.8 0.0001 24.8 1.7 14 473-486 2-15 (26)
82 KOG2120 SCF ubiquitin ligase, 65.9 1 2.2E-05 44.9 -1.9 79 402-482 286-372 (419)
83 PF13516 LRR_6: Leucine Rich r 62.5 4.3 9.3E-05 24.0 1.1 15 473-487 2-16 (24)
84 KOG3763 mRNA export factor TAP 58.3 4.1 8.9E-05 43.8 0.7 64 400-464 216-285 (585)
85 KOG3864 Uncharacterized conser 56.8 1.9 4.2E-05 40.6 -1.8 81 402-482 101-185 (221)
86 PF04862 DUF642: Protein of un 56.2 1.5E+02 0.0032 26.8 10.5 84 87-174 72-158 (159)
87 smart00368 LRR_RI Leucine rich 50.3 13 0.00028 23.1 1.8 14 473-486 2-15 (28)
88 KOG3763 mRNA export factor TAP 41.6 12 0.00027 40.3 1.1 61 424-486 216-283 (585)
89 KOG2120 SCF ubiquitin ligase, 41.4 2 4.4E-05 42.8 -4.3 85 402-486 185-273 (419)
90 KOG3593 Predicted receptor-lik 38.1 18 0.0004 35.8 1.6 86 30-122 63-158 (355)
91 PHA01818 hypothetical protein 29.1 4.5E+02 0.0098 26.7 9.5 88 42-132 339-441 (458)
92 PRK06764 hypothetical protein; 26.0 63 0.0014 25.8 2.5 19 83-101 73-91 (105)
93 TIGR00864 PCC polycystin catio 24.0 46 0.00099 42.9 2.1 32 408-439 1-32 (2740)
94 TIGR00864 PCC polycystin catio 21.7 58 0.0013 42.1 2.3 31 432-462 1-32 (2740)
95 KOG4308 LRR-containing protein 20.1 4.6 0.0001 43.4 -6.6 37 449-485 262-302 (478)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-87 Score=734.67 Aligned_cols=464 Identities=27% Similarity=0.439 Sum_probs=385.0
Q ss_pred CCCceEEccCCCCCCc--ccceEEecCccccccCCcccccCCCCCCCcceEEeecCCCCCceeEEeeccCCCeEEEEEEe
Q 042915 25 SPQDFLLSCGDTVGLT--TGRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTTY 102 (501)
Q Consensus 25 ~~~~f~idCG~~~~~~--~~~~~~~~D~~~~~~g~~~~~~~~~~~~~y~t~R~F~~~~~~~~cY~~~~~~~~~ylvR~~F 102 (501)
.++.|+||||++++.+ .+||+|++|..|..+.......++...++|+|||+||..+|+++||+||++++|+||||+||
T Consensus 22 ~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~ylVRl~F 101 (623)
T PLN03150 22 EPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFF 101 (623)
T ss_pred CCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecCCCcEEEEEEe
Confidence 3456799999988764 68999999977743222222223344578999999997558899999999999999999999
Q ss_pred eccCCCCCCCCCceEEEEcCeEEEEEEccccccCCcceEEEEEEEecCCceEEEEeecCCCCCCceeeeEEeeecCCCCc
Q 042915 103 YYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTTSHPFISAIELSKLDDSLY 182 (501)
Q Consensus 103 ~~~~yd~~~~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~~~~~~pFIn~iEl~~l~~~~y 182 (501)
+||+||+.+.+|.|||++|++.|.++...-.. .+..++||++++++++.++|||+|++.+ +||||+|||||||+.+|
T Consensus 102 ~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~-~~~~v~~E~i~~~~~~~l~vcf~~~~~~--~pFIs~iEv~~l~~~~y 178 (623)
T PLN03150 102 GLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS-HDEQVFAEALVFLTDGSASICFHSTGHG--DPAILSIEILQVDDKAY 178 (623)
T ss_pred ecCCcCCCCCCCceEEEECcEEEEEEecCccc-CCCcEEEEEEEEecCCcEEEEEecCCCC--CCceeEEEEEEcCcccc
Confidence 99999999988899999999999999753211 2346899999999999999999999876 99999999999999999
Q ss_pred ccc--ccccceeEEEeeeecCCC---CCCCCCCCCC--CccccCCCCC---C-CceecccccCC-CCCCCCCcHHHHhhc
Q 042915 183 NTT--DLNKFALSSIARSSFGDD---ARISFPDDLF--NRKWNSFKDL---N-PVEENKNKVNP-EDFWNKPPAKAFLSS 250 (501)
Q Consensus 183 ~~~--~~~~~~l~~~~R~n~G~~---~~ir~~dD~~--dR~W~~~~~~---~-~~~~~~~~i~~-~~~~~~~P~~V~~TA 250 (501)
... ...+.+|+++||+||||+ ..+|||||+| ||+|.+|... . ..+++...|+. .+.++.||+.|||||
T Consensus 179 ~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA 258 (623)
T PLN03150 179 NFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSA 258 (623)
T ss_pred cccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhh
Confidence 633 123568999999999995 2489999998 9999988552 1 12333444542 345788999999999
Q ss_pred ccCCCCcceEEecCCCCCCCccEEEEEEeeecCC-CCCCCceEEEEEECCcccccccccccc----cceeeecccc--cC
Q 042915 251 ITTTKGKPLQIQWPPGPLPNSRYYIALYFQENRA-PSPESWRVFNVSVNGNTFFKDLNVTTN----GVAVYGNEWP--LS 323 (501)
Q Consensus 251 ~~~~~~~~~~ltw~~~~~~~~~y~v~lhF~e~~~-~~~~~~R~F~I~in~~~~~~~~~~~~~----~~~~~~~~~~--~~ 323 (501)
+++.++. .+++|.++++++..|+|||||||++. ....++|+|||||||+.+.+++|+... ..+++.++.. ..
T Consensus 259 ~~~~~~~-~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~ 337 (623)
T PLN03150 259 LVSTDTQ-PDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSG 337 (623)
T ss_pred ccccCCC-CceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecC
Confidence 9887633 67899999999999999999999974 446678999999999998888886442 2344443321 23
Q ss_pred cceEEEEccCCCCCCCcccccccceecccccCcCcchhHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCcceeeecCCC--
Q 042915 324 GQTNITMTPRNDMPVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPI-DWNGDPCLPWENSWTGVTCNKSK-- 400 (501)
Q Consensus 324 g~~~l~l~~~~~s~lpp~ln~lei~~~l~~~~~t~~~d~~al~~~~~~~~~~~~-~W~~d~C~~~~~~w~gv~c~~~~-- 400 (501)
+.++|++++...+ +|+|||+|||++.+.+..+.+.|+.||+.+|..+..... +|+++||.|..+.|.|+.|....
T Consensus 338 g~l~isl~p~~~s--~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~~~~ 415 (623)
T PLN03150 338 RTLTIVLQPKKGT--HAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTK 415 (623)
T ss_pred CeEEEEEeeCCCC--cceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeeccCCC
Confidence 6688999986544 699999999999998788899999999999998875433 89999999888899999996422
Q ss_pred -CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 401 -HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 401 -l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
...++.|+|++|++.|.+|..++.|++|+.|+|++|++.|.+| .++.+++|+.|+|++|+++|.+|+.++.+++|+.|
T Consensus 416 ~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 416 GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred CceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 2469999999999999999999999999999999999999988 58999999999999999999999999999999999
Q ss_pred EccCCcCcccCCccCC
Q 042915 479 FLQNNNLDGQIPDGLW 494 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~~~ 494 (501)
+|++|+|+|.+|..+.
T Consensus 496 ~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 496 NLNGNSLSGRVPAALG 511 (623)
T ss_pred ECcCCcccccCChHHh
Confidence 9999999999998875
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=1.3e-71 Score=568.42 Aligned_cols=314 Identities=30% Similarity=0.552 Sum_probs=255.1
Q ss_pred EccCCCCCCc-----ccceEEecCccccccCCcccccC------CCCCCCcceEEeecCCCCCceeEEeecc--CCCeEE
Q 042915 31 LSCGDTVGLT-----TGRLKFLPDKDFQFLGNTTTLKQ------PGLLPILSTLRFFTELQARKYCYVFNVT--QGDKYL 97 (501)
Q Consensus 31 idCG~~~~~~-----~~~~~~~~D~~~~~~g~~~~~~~------~~~~~~y~t~R~F~~~~~~~~cY~~~~~--~~~~yl 97 (501)
||||++.+.+ .+||+|++|.+|+++|++..++. +...++|+|||+||+ |+|+||+|++. +|+|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~--g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPE--GSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCC--CCccEEEeeccCCCCceEE
Confidence 7999986644 46999999999999999887732 233569999999997 57899999998 466999
Q ss_pred EEEEeeccCCCCCC-----CCCceEEEEcCeEEEEEEccccccCCcceEEEEEEEec-CCceEEEEeecCCCCCCceeee
Q 042915 98 VRTTYYYGGFDGGT-----QPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAV-GNSLSVCLARNNDTTSHPFISA 171 (501)
Q Consensus 98 vR~~F~~~~yd~~~-----~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~-~~~l~vcf~~~~~~~~~pFIn~ 171 (501)
|||||+|||||+++ .++.|||++|++.|.+|++.. . ...+++||+++.+. ++.+.|||+|++.| .+||||+
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~-~~~~~~~E~ii~v~~~~~l~vclv~~~~g-~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-S-PSSPVVKEFIINVTWSDTLSVCLVPTGSG-TFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-C-CcceEEEEEEEEEcCCCcEEEEEEeCCCC-CCCceeE
Confidence 99999999999874 256799999999999999865 1 22468999888887 79999999999966 2599999
Q ss_pred EEeeecCCCCccc-cccccceeEEEeeeecCCC-CCCCCCCCCCCccccCCCC-CCCc-eecccccC--CCCCCCCCcHH
Q 042915 172 IELSKLDDSLYNT-TDLNKFALSSIARSSFGDD-ARISFPDDLFNRKWNSFKD-LNPV-EENKNKVN--PEDFWNKPPAK 245 (501)
Q Consensus 172 iEl~~l~~~~y~~-~~~~~~~l~~~~R~n~G~~-~~ir~~dD~~dR~W~~~~~-~~~~-~~~~~~i~--~~~~~~~~P~~ 245 (501)
|||||||+++|+. ....+.+|++++|+|||+. ..||||||+|||+|.++.. ..+. +.++.+|+ ..+..+.||.+
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~ 235 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSA 235 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHH
Confidence 9999999999952 3356789999999999995 2499999999999997632 2222 33334454 34668999999
Q ss_pred HHhhcccCCCCc-ceEEecCCCCCCCccEEEEEEeeecCCCC-CCCceEEEEEECCcccccccccccc---cceeeeccc
Q 042915 246 AFLSSITTTKGK-PLQIQWPPGPLPNSRYYIALYFQENRAPS-PESWRVFNVSVNGNTFFKDLNVTTN---GVAVYGNEW 320 (501)
Q Consensus 246 V~~TA~~~~~~~-~~~ltw~~~~~~~~~y~v~lhF~e~~~~~-~~~~R~F~I~in~~~~~~~~~~~~~---~~~~~~~~~ 320 (501)
||+||++|.++. +++++|.+ +++++.||||||||||+... ..++|+|+|||||+.+.+++.+... +.++|.+++
T Consensus 236 V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~ 314 (347)
T PF12819_consen 236 VYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYV 314 (347)
T ss_pred HHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceE
Confidence 999999998754 79999999 99999999999999999764 3447999999999998875555222 345566654
Q ss_pred c---cCcceEEEEccCCCCCCCcccccccceec
Q 042915 321 P---LSGQTNITMTPRNDMPVGPIISAGEIFQL 350 (501)
Q Consensus 321 ~---~~g~~~l~l~~~~~s~lpp~ln~lei~~~ 350 (501)
. ..+.++|+|+++..+.+||+|||+|||++
T Consensus 315 ~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 315 VNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred EEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 3 33468899999999999999999999974
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.75 E-value=2.6e-17 Score=181.03 Aligned_cols=92 Identities=34% Similarity=0.491 Sum_probs=82.4
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCC-CCCCE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQL-PILRE 477 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l-~~L~~ 477 (501)
.+++|+.|+|++|+|.|.+|..++.|++|+.|+|++|+++|.+|+ +++|++|+.|+|++|+++|.+|..++.+ .++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 456899999999999999999999999999999999999999995 8999999999999999999999998864 46788
Q ss_pred EEccCCcCcccCCc
Q 042915 478 IFLQNNNLDGQIPD 491 (501)
Q Consensus 478 L~Ls~N~l~g~lP~ 491 (501)
+++.+|...+..|.
T Consensus 520 l~~~~N~~lc~~p~ 533 (623)
T PLN03150 520 FNFTDNAGLCGIPG 533 (623)
T ss_pred EEecCCccccCCCC
Confidence 99999986545553
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.32 E-value=5.8e-12 Score=146.35 Aligned_cols=138 Identities=33% Similarity=0.569 Sum_probs=95.2
Q ss_pred CcCcchhHHHHHHHHHhcCCCC---CCCCC-CCCCCCCCCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCe
Q 042915 355 GTTFPRDVVAMEELAKHFKNPP---IDWNG-DPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKH 430 (501)
Q Consensus 355 ~~t~~~d~~al~~~~~~~~~~~---~~W~~-d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~ 430 (501)
....+.|..+|.++|+.+..+. .+|+. +.| |.|.|+.|.. ..+++.|+|++|++.|.++..+..+++|+.
T Consensus 24 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~--~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 24 SMLHAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNN--SSRVVSIDLSGKNISGKISSAIFRLPYIQT 97 (968)
T ss_pred cCCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCC--CCcEEEEEecCCCccccCChHHhCCCCCCE
Confidence 3446789999999999885332 36853 344 4899999974 247888888888888777777777888888
Q ss_pred eecCCCcCCCCCcC--CCCCCCCCEEEccCC----------------------cCCccCccccCCCCCCCEEEccCCcCc
Q 042915 431 LRLGGNKLWGQIPE--MKTLTALETLHLENN----------------------QFEGWIPQTLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 431 L~Ls~N~l~~~~p~--~~~l~~L~~L~Ls~N----------------------~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 486 (501)
|+|++|++.+.+|. +..+++|++|+|++| .+.+.+|..++.+++|++|+|++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 88888877766663 335555555555555 445556666667777777777777777
Q ss_pred ccCCccCC-CCCC
Q 042915 487 GQIPDGLW-KPGL 498 (501)
Q Consensus 487 g~lP~~~~-~~~L 498 (501)
+.+|..+. +++|
T Consensus 178 ~~~p~~~~~l~~L 190 (968)
T PLN00113 178 GKIPNSLTNLTSL 190 (968)
T ss_pred ccCChhhhhCcCC
Confidence 67776665 4443
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.07 E-value=4.6e-10 Score=103.88 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=76.7
Q ss_pred eEEccCCCCCCcccceEEecCccccccCCcc-----------cccCC----CCCCCcceEEeecCCCCCceeEEeeccCC
Q 042915 29 FLLSCGDTVGLTTGRLKFLPDKDFQFLGNTT-----------TLKQP----GLLPILSTLRFFTELQARKYCYVFNVTQG 93 (501)
Q Consensus 29 f~idCG~~~~~~~~~~~~~~D~~~~~~g~~~-----------~~~~~----~~~~~y~t~R~F~~~~~~~~cY~~~~~~~ 93 (501)
+.||||++...+..|+.|.+|..|...+... ....+ ....+|+|.|.=+. ...|.+|+.+.
T Consensus 3 ~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~~~ 78 (174)
T PF11721_consen 3 LRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVVPN 78 (174)
T ss_dssp EEEEETSSSEEETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--S-
T ss_pred EEEECCCCcccCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecCCC
Confidence 4799999876567899999998765333300 00010 11248999999654 38999997788
Q ss_pred CeEEEEEEeeccCCCC---CCCC-C-ceEEEEcCe-EEEEEEccccccCC-cceEEEE-EEEecCCceEEEEeecCCC--
Q 042915 94 DKYLVRTTYYYGGFDG---GTQP-P-VFDQIIGGT-KWSIVDTAEDFANG-LSSYYEV-VVAAVGNSLSVCLARNNDT-- 163 (501)
Q Consensus 94 ~~ylvR~~F~~~~yd~---~~~~-~-~F~v~~~~~-~~~~v~~~~~~~~~-~~~~~E~-i~~~~~~~l~vcf~~~~~~-- 163 (501)
|.|-|||||-=..+.. ...+ . .|||.+++. ....+++....... ...++++ -+.++++.|.|+|...+++
T Consensus 79 G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~~~~ 158 (174)
T PF11721_consen 79 GTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGKGTL 158 (174)
T ss_dssp EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--SEE
T ss_pred cEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCCCcE
Confidence 8999999995332222 1111 2 499999984 35555553322111 2467777 4567889999999952221
Q ss_pred -------CCCceeeeE
Q 042915 164 -------TSHPFISAI 172 (501)
Q Consensus 164 -------~~~pFIn~i 172 (501)
.+-|.||||
T Consensus 159 ~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 159 CIPFIGSYGNPLISAI 174 (174)
T ss_dssp EEEEESSSSSSSEEEE
T ss_pred EeeccccCCCcEEeeC
Confidence 124777776
No 6
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.00 E-value=1.7e-10 Score=106.87 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=62.0
Q ss_pred EeeeecCCCCCCCCCCCCCCccccCCCCCC---C-ceec----ccccC-CCCCCCCCcHHHHhhcccCCCCcceEEecCC
Q 042915 195 IARSSFGDDARISFPDDLFNRKWNSFKDLN---P-VEEN----KNKVN-PEDFWNKPPAKAFLSSITTTKGKPLQIQWPP 265 (501)
Q Consensus 195 ~~R~n~G~~~~ir~~dD~~dR~W~~~~~~~---~-~~~~----~~~i~-~~~~~~~~P~~V~~TA~~~~~~~~~~ltw~~ 265 (501)
++|+|+||. .+ .|...+.|.+|.... + ...+ ..... ........+..+|||+|.... +++|.+
T Consensus 2 ~~~IN~Gg~---~~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~i 73 (174)
T PF11721_consen 2 VLRINAGGP---AY-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDI 73 (174)
T ss_dssp EEEEEETSS---SE-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEE
T ss_pred EEEEECCCC---cc-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEE
Confidence 689999995 24 778999999985432 2 1101 00011 112234557799999987333 255555
Q ss_pred CCCCCccEEEEEEeeecCCCC-----CCCceEEEEEECCccccccccccc
Q 042915 266 GPLPNSRYYIALYFQENRAPS-----PESWRVFNVSVNGNTFFKDLNVTT 310 (501)
Q Consensus 266 ~~~~~~~y~v~lhF~e~~~~~-----~~~~R~F~I~in~~~~~~~~~~~~ 310 (501)
++.++-.|-|+|||||+.... ..++|+|||+|||+.+.+++|+..
T Consensus 74 p~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~ 123 (174)
T PF11721_consen 74 PVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYA 123 (174)
T ss_dssp E--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHH
T ss_pred ecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHH
Confidence 656678899999999986443 356899999999999999999765
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.99 E-value=4.5e-10 Score=130.59 Aligned_cols=93 Identities=29% Similarity=0.547 Sum_probs=64.4
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
++++|+.|+|++|++.+.+|..+.++++|+.|+|++|++++.+|. +..+++|+.|+|++|++.|.+|..+..+++|+.|
T Consensus 497 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 345666677777777766777677777777777777777766663 5667777777777777777777777777777777
Q ss_pred EccCCcCcccCCcc
Q 042915 479 FLQNNNLDGQIPDG 492 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~ 492 (501)
++++|+++|.+|..
T Consensus 577 ~ls~N~l~~~~p~~ 590 (968)
T PLN00113 577 NISHNHLHGSLPST 590 (968)
T ss_pred eccCCcceeeCCCc
Confidence 77777777767643
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.85 E-value=7.7e-11 Score=105.73 Aligned_cols=153 Identities=24% Similarity=0.330 Sum_probs=117.3
Q ss_pred EEEEccCCCCCCCcccccccceecccccC---cCcchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCCCCee
Q 042915 327 NITMTPRNDMPVGPIISAGEIFQLLPLAG---TTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTR 403 (501)
Q Consensus 327 ~l~l~~~~~s~lpp~ln~lei~~~l~~~~---~t~~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~~l~~ 403 (501)
.+.+..+....+||-+..+..++.+.+.+ ...+..+..|.+++-.-.+ . +...-++...+.++.
T Consensus 37 rLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg----m---------nrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 37 RLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG----M---------NRLNILPRGFGSFPA 103 (264)
T ss_pred hhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc----h---------hhhhcCccccCCCch
Confidence 45566566666777775555566555532 3345556666666532111 1 122333444567889
Q ss_pred EEEecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915 404 VVSIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482 (501)
Q Consensus 404 l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 482 (501)
|+.|+|.+|++. ..+|..|..|+.|+.|+|+.|.+.-.+|++++|++|+.|.+..|.+. ++|..++.+++|++|++.+
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999999999997 46899999999999999999999988889999999999999999998 8999999999999999999
Q ss_pred CcCcccCCccCC
Q 042915 483 NNLDGQIPDGLW 494 (501)
Q Consensus 483 N~l~g~lP~~~~ 494 (501)
|+++ .+|++++
T Consensus 183 nrl~-vlppel~ 193 (264)
T KOG0617|consen 183 NRLT-VLPPELA 193 (264)
T ss_pred ceee-ecChhhh
Confidence 9999 8999887
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.82 E-value=2e-10 Score=103.11 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=83.9
Q ss_pred CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCC-Cc-CCCCCCCCCEEEccCCcCCccCcc
Q 042915 390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ-IP-EMKTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~-~p-~~~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
+.+.++.+.+.+++|+.|++.-|++. .+|..|+.++.|+.|||..|++... +| .|-.|+.|+.|.|+.|.++ .+|.
T Consensus 67 qie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~ 144 (264)
T KOG0617|consen 67 QIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP 144 (264)
T ss_pred hhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh
Confidence 55666777777888888888888887 7788888888888888888888643 45 4667778888888888887 7888
Q ss_pred ccCCCCCCCEEEccCCcCcccCCccCC-CCC
Q 042915 468 TLSQLPILREIFLQNNNLDGQIPDGLW-KPG 497 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~ 497 (501)
.++.+++|+.|.+..|.+- ++|.+++ ++.
T Consensus 145 dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred hhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 8999999999999999888 7898887 443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.74 E-value=7.6e-10 Score=116.06 Aligned_cols=150 Identities=22% Similarity=0.352 Sum_probs=113.5
Q ss_pred CCCcccccccceecccccCcCcchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCCCCeeEEEecCCCCcccc
Q 042915 337 PVGPIISAGEIFQLLPLAGTTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISG 416 (501)
Q Consensus 337 ~lpp~ln~lei~~~l~~~~~t~~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g 416 (501)
.+|+.+..+..+..+++.-...+.-.+.+-++...... +.++ +..+.+.-..+...+|.+|+||.|+|+
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrL---NLS~-------N~iteL~~~~~~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRL---NLSG-------NKITELNMTEGEWENLETLNLSRNQLT- 281 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhhee---ccCc-------CceeeeeccHHHHhhhhhhccccchhc-
Confidence 46777777777777766544455555555555443221 1111 233444433344568899999999999
Q ss_pred cCcccccCCCCCCeeecCCCcCC--CCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 417 TLPESIGNLTALKHLRLGGNKLW--GQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 417 ~~p~~~~~L~~L~~L~Ls~N~l~--~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
.+|+.+++|+.|+.|.+.+|+++ |++..+++|.+|+.+.+++|.+. .+|+.+++|..|+.|.|++|+|- .+|+++.
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence 89999999999999999999985 44446999999999999999998 99999999999999999999998 8999987
Q ss_pred -CCCCc
Q 042915 495 -KPGLN 499 (501)
Q Consensus 495 -~~~L~ 499 (501)
++.|+
T Consensus 360 lL~~l~ 365 (1255)
T KOG0444|consen 360 LLPDLK 365 (1255)
T ss_pred hcCCcc
Confidence 66554
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.6e-08 Score=76.67 Aligned_cols=60 Identities=43% Similarity=0.575 Sum_probs=41.7
Q ss_pred CCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcC
Q 042915 426 TALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNL 485 (501)
Q Consensus 426 ~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l 485 (501)
++|++|++++|+++...++ |.++++|++|+|++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777766553 57777777777777777755566777777777777777764
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=3.4e-08 Score=74.80 Aligned_cols=60 Identities=32% Similarity=0.483 Sum_probs=54.8
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcC
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQF 461 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l 461 (501)
++|+.|++++|+|+...+..|.++++|++|++++|+++...++ |.++++|+.|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688999999999977778999999999999999999988774 89999999999999985
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.54 E-value=1e-08 Score=107.70 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=107.3
Q ss_pred CcceEEEEccCCCCCCCcccccccceecccccC---cCcchhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCC
Q 042915 323 SGQTNITMTPRNDMPVGPIISAGEIFQLLPLAG---TTFPRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKS 399 (501)
Q Consensus 323 ~g~~~l~l~~~~~s~lpp~ln~lei~~~l~~~~---~t~~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~ 399 (501)
+...++.|..+..-.+|..+..+..++-+.+.- .+...+...|-.++....- + ..-.-.||+-+.-
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R-------~----N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR-------D----NNLKNSGIPTDIF 100 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh-------c----cccccCCCCchhc
Confidence 445678888777777887777766665555421 1112222222222221110 0 0113456777777
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
.+..|+.|+||+|+|. ..|..+..-+++-.|+||+|+|..++.. +-+|+.|..||||+|++. .+|+.+.+|..|+.|
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 7888999999999998 7888888889999999999999855544 688999999999999998 788889999999999
Q ss_pred EccCCcCc
Q 042915 479 FLQNNNLD 486 (501)
Q Consensus 479 ~Ls~N~l~ 486 (501)
.|++|+|.
T Consensus 179 ~Ls~NPL~ 186 (1255)
T KOG0444|consen 179 KLSNNPLN 186 (1255)
T ss_pred hcCCChhh
Confidence 99999864
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.38 E-value=3.2e-08 Score=99.49 Aligned_cols=102 Identities=25% Similarity=0.309 Sum_probs=87.3
Q ss_pred CCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCcc
Q 042915 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
+-.+.++...+.+.+|.-|+|..|+|. .+| +|.++..|+.|+++.|++.-.+.+. .++.+|..|||..|++. ..|.
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd 269 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD 269 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch
Confidence 346667777777888888999999997 677 6899999999999999998655564 68999999999999998 8999
Q ss_pred ccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 468 TLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
.+.-+++|+.||+++|.|+ .+|.+++
T Consensus 270 e~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred HHHHhhhhhhhcccCCccc-cCCcccc
Confidence 9999999999999999999 6898887
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.33 E-value=3e-07 Score=84.84 Aligned_cols=85 Identities=29% Similarity=0.390 Sum_probs=37.4
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccC-ccccCCCCCCCE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWI-PQTLSQLPILRE 477 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~-P~~~~~l~~L~~ 477 (501)
.+.+++.|+|++|+|+. +. .+..|+.|+.|++++|+++...+.+ ..+++|+.|+|++|++...- -..+..+++|+.
T Consensus 40 ~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 35678888888888874 33 3777888888888888888654444 45788888888888886311 134667788888
Q ss_pred EEccCCcCc
Q 042915 478 IFLQNNNLD 486 (501)
Q Consensus 478 L~Ls~N~l~ 486 (501)
|+|.+|+++
T Consensus 118 L~L~~NPv~ 126 (175)
T PF14580_consen 118 LSLEGNPVC 126 (175)
T ss_dssp EE-TT-GGG
T ss_pred eeccCCccc
Confidence 888888887
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.28 E-value=1.1e-07 Score=95.84 Aligned_cols=90 Identities=30% Similarity=0.468 Sum_probs=68.6
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCC-----------------------CCCcC-CCCCCCCCEEEc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLW-----------------------GQIPE-MKTLTALETLHL 456 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-----------------------~~~p~-~~~l~~L~~L~L 456 (501)
+++++-|+|++|-+. .+|..++.+..||.|++++|+|. ...|+ +.+|.+|..|||
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 456666666666665 56666666666777776666554 33333 677899999999
Q ss_pred cCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 457 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
.+|.+. .+|..+|+|++|++|.|++|+|. .|....
T Consensus 513 ~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~i 547 (565)
T KOG0472|consen 513 QNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQI 547 (565)
T ss_pred CCCchh-hCChhhccccceeEEEecCCccC--CCHHHH
Confidence 999999 89999999999999999999998 776544
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.28 E-value=9.7e-08 Score=100.05 Aligned_cols=94 Identities=22% Similarity=0.288 Sum_probs=79.0
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC----CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE----MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~----~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
+..|++|+|++|.+...-...|..|++|+.|||.+|.|.+.+.+ |.+|++|+.|+|.+|++....-.+|.++..|+
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALE 419 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccc
Confidence 55778889999998877777888999999999999999988874 67899999999999999854456899999999
Q ss_pred EEEccCCcCcccCCccCC
Q 042915 477 EIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~~~~ 494 (501)
+|||.+|.|...-|.+|-
T Consensus 420 ~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 420 HLDLGDNAIASIQPNAFE 437 (873)
T ss_pred eecCCCCcceeecccccc
Confidence 999999999844466665
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=5.6e-07 Score=83.10 Aligned_cols=82 Identities=32% Similarity=0.555 Sum_probs=25.6
Q ss_pred CeeEEEecCCCCcccccCccccc-CCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCcccc-CCCCCCCEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIG-NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTL-SQLPILREI 478 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~-~~l~~L~~L 478 (501)
..++++|+|++|.|+. +. .++ .+.+|+.|+|++|.++. ++.+..++.|+.|+|++|+++ .+.+.+ ..+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3467888888888873 33 355 57788888888888874 456777888888888888887 454444 357888888
Q ss_pred EccCCcCc
Q 042915 479 FLQNNNLD 486 (501)
Q Consensus 479 ~Ls~N~l~ 486 (501)
+|++|+|.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 88888886
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.16 E-value=1.8e-07 Score=94.07 Aligned_cols=104 Identities=28% Similarity=0.378 Sum_probs=82.2
Q ss_pred eeecCCCCe--------eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccC-CcCCc
Q 042915 394 VTCNKSKHT--------RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLEN-NQFEG 463 (501)
Q Consensus 394 v~c~~~~l~--------~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~-N~l~g 463 (501)
|.|+..++. ..++|+|..|+|+.+.+..|+.+++|+.||||+|+|+.+-| .|.+|++|..|-+-+ |+|+.
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 778765543 56899999999998888999999999999999999998877 489999888776655 88985
Q ss_pred cCccccCCCCCCCEEEccCCcCcccCCcc-CC-CCCC
Q 042915 464 WIPQTLSQLPILREIFLQNNNLDGQIPDG-LW-KPGL 498 (501)
Q Consensus 464 ~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-~~-~~~L 498 (501)
.....|++|.+|+.|.+.-|++. .++.. |. ++++
T Consensus 131 l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l 166 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSL 166 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhc
Confidence 44457888888888888888887 55543 33 4444
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.15 E-value=1.1e-06 Score=92.32 Aligned_cols=86 Identities=24% Similarity=0.294 Sum_probs=65.2
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
++.|++||||.|.|+...-++|..-.+|++|+|++|+|+..-. .|..+.+|..|.|++|+++-..+..|.+|++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 5567788888888875555666666778888888888876544 477788888888888888844445677788888888
Q ss_pred ccCCcCc
Q 042915 480 LQNNNLD 486 (501)
Q Consensus 480 Ls~N~l~ 486 (501)
|..|+|.
T Consensus 228 LnrN~ir 234 (873)
T KOG4194|consen 228 LNRNRIR 234 (873)
T ss_pred cccccee
Confidence 8888886
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.06 E-value=4.7e-07 Score=99.50 Aligned_cols=84 Identities=30% Similarity=0.362 Sum_probs=65.4
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
..+|+.|+|++|+|.......+.+|+.|+.|+||+|+|+.++..+..+..|++|...+|++. .+| .+..+++|+.+||
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 46889999999998855556688899999999999998866555677777777777777776 666 6777777777777
Q ss_pred cCCcCc
Q 042915 481 QNNNLD 486 (501)
Q Consensus 481 s~N~l~ 486 (501)
+.|+|+
T Consensus 460 S~N~L~ 465 (1081)
T KOG0618|consen 460 SCNNLS 465 (1081)
T ss_pred ccchhh
Confidence 777775
No 22
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.04 E-value=4.6e-05 Score=78.43 Aligned_cols=146 Identities=21% Similarity=0.240 Sum_probs=83.3
Q ss_pred EEccCCCCC-----CcccceEEecC---ccccccCCccccc-----CCCC--CCCcceEEeecCCC-CCceeEEeeccCC
Q 042915 30 LLSCGDTVG-----LTTGRLKFLPD---KDFQFLGNTTTLK-----QPGL--LPILSTLRFFTELQ-ARKYCYVFNVTQG 93 (501)
Q Consensus 30 ~idCG~~~~-----~~~~~~~~~~D---~~~~~~g~~~~~~-----~~~~--~~~y~t~R~F~~~~-~~~~cY~~~~~~~ 93 (501)
.++||++.+ .+.-.|.|.+. .....-.....+. ..+. ..-|+|||.=...+ .-.-.+.| +.++
T Consensus 182 R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~ 260 (347)
T PF12819_consen 182 RLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPG 260 (347)
T ss_pred eecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CCCC
Confidence 799998651 12357899853 1111111111122 1111 12599999865431 01223344 5677
Q ss_pred CeEEEEEEeeccCCCCCCC-CCceEEEEcCeEEEEEEcccc--ccCCcceEEEEEEEecC-CceEEEEeecCCCCCCcee
Q 042915 94 DKYLVRTTYYYGGFDGGTQ-PPVFDQIIGGTKWSIVDTAED--FANGLSSYYEVVVAAVG-NSLSVCLARNNDTTSHPFI 169 (501)
Q Consensus 94 ~~ylvR~~F~~~~yd~~~~-~~~F~v~~~~~~~~~v~~~~~--~~~~~~~~~E~i~~~~~-~~l~vcf~~~~~~~~~pFI 169 (501)
..|+||+||.=-....... .=.|+|++++..|.. .+... .....+.++.+++.+.+ +.+.|+|.++..++--|+|
T Consensus 261 ~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiL 339 (347)
T PF12819_consen 261 FSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPIL 339 (347)
T ss_pred ccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCcee
Confidence 7899999995222111111 125999999877653 33221 11112346677777654 5799999998766334999
Q ss_pred eeEEeeec
Q 042915 170 SAIELSKL 177 (501)
Q Consensus 170 n~iEl~~l 177 (501)
||+||..|
T Consensus 340 NalEIy~v 347 (347)
T PF12819_consen 340 NALEIYKV 347 (347)
T ss_pred EeeeeEeC
Confidence 99999864
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.97 E-value=1.9e-05 Score=93.64 Aligned_cols=93 Identities=24% Similarity=0.380 Sum_probs=69.0
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
+.+|+.|+|++|++. .++..+..+++|+.|+|+++...+.+|.+..+++|+.|+|++|.....+|..++.+++|+.|++
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 457778888888876 5667777788888888887765566777777888888888887766677888888888888888
Q ss_pred cCCcCcccCCccCC
Q 042915 481 QNNNLDGQIPDGLW 494 (501)
Q Consensus 481 s~N~l~g~lP~~~~ 494 (501)
++|...+.+|..+.
T Consensus 689 ~~c~~L~~Lp~~i~ 702 (1153)
T PLN03210 689 SRCENLEILPTGIN 702 (1153)
T ss_pred CCCCCcCccCCcCC
Confidence 87644446776554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.92 E-value=5.8e-06 Score=92.52 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=64.9
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
.+|+.|+|++|+|++ +|.. .++|+.|++++|+|++ +|.+ +.+|+.|+|++|+|+ .+|..++.+++|+.|+|+
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 356777888887773 4543 3567888888888875 3432 346788999999998 789999999999999999
Q ss_pred CCcCcccCCccC
Q 042915 482 NNNLDGQIPDGL 493 (501)
Q Consensus 482 ~N~l~g~lP~~~ 493 (501)
+|+|+|.+|..+
T Consensus 454 ~N~Ls~~~~~~L 465 (788)
T PRK15387 454 GNPLSERTLQAL 465 (788)
T ss_pred CCCCCchHHHHH
Confidence 999998877655
No 25
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=9e-06 Score=57.25 Aligned_cols=36 Identities=44% Similarity=0.610 Sum_probs=21.4
Q ss_pred CCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 042915 450 ALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 450 ~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 486 (501)
+|++|+|++|+++ .+|..+++|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 45555666666666666666665
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.88 E-value=3.7e-06 Score=84.76 Aligned_cols=89 Identities=24% Similarity=0.230 Sum_probs=81.7
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
..++++|+.|+|++|+|+++-+..|.++..|+.|.|..|+|...-. .|.++..|+.|+|.+|+|+-..|.+|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 5678999999999999999999999999999999999999985544 379999999999999999988999999999999
Q ss_pred EEEccCCcCc
Q 042915 477 EIFLQNNNLD 486 (501)
Q Consensus 477 ~L~Ls~N~l~ 486 (501)
.|+|-.|++.
T Consensus 350 ~l~l~~Np~~ 359 (498)
T KOG4237|consen 350 TLNLLSNPFN 359 (498)
T ss_pred eeehccCccc
Confidence 9999998874
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.85 E-value=1.5e-06 Score=91.09 Aligned_cols=96 Identities=25% Similarity=0.388 Sum_probs=79.2
Q ss_pred eecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCC
Q 042915 395 TCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPI 474 (501)
Q Consensus 395 ~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~ 474 (501)
+-..+.+.+|..|+.+.|.+. .+|..+++|.+|+.|.+..|++...++++..| .|..||+|.|++. .+|-.|.+|+.
T Consensus 159 p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~ 235 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRH 235 (722)
T ss_pred CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecchhhhhhhh
Confidence 333445567888888888887 67777888888999999889888777777755 4889999999998 89999999999
Q ss_pred CCEEEccCCcCcccCCccCC
Q 042915 475 LREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 475 L~~L~Ls~N~l~g~lP~~~~ 494 (501)
|++|-|.+|+|. +=|..++
T Consensus 236 Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 236 LQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred heeeeeccCCCC-CChHHHH
Confidence 999999999998 6677777
No 28
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=1.8e-06 Score=75.23 Aligned_cols=93 Identities=19% Similarity=0.190 Sum_probs=77.6
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
...+|+.++|++|.+....+..-.+.+.++.|+|++|.|...+.++..++.|+.|+++.|.+. ..|+-+..|.+|..|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 446889999999999854444445566899999999999977778999999999999999998 6788888899999999
Q ss_pred ccCCcCcccCCccCC
Q 042915 480 LQNNNLDGQIPDGLW 494 (501)
Q Consensus 480 Ls~N~l~g~lP~~~~ 494 (501)
..+|.+. +||-.+.
T Consensus 130 s~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 130 SPENARA-EIDVDLF 143 (177)
T ss_pred CCCCccc-cCcHHHh
Confidence 9999988 7886654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.77 E-value=8e-06 Score=79.74 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=51.0
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
.++++.|++|+|.|. .+. .+..|++|+.||||+|.++....--.+|-+.+.|.|+.|.+. .+ ..++.+-+|..||+
T Consensus 306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccc
Confidence 456666677776665 222 256666677777777766533221145556666677777665 22 34666778888999
Q ss_pred cCCcCc
Q 042915 481 QNNNLD 486 (501)
Q Consensus 481 s~N~l~ 486 (501)
++|+|.
T Consensus 382 ~~N~Ie 387 (490)
T KOG1259|consen 382 SSNQIE 387 (490)
T ss_pred cccchh
Confidence 999886
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.76 E-value=2.6e-06 Score=89.44 Aligned_cols=93 Identities=25% Similarity=0.386 Sum_probs=80.4
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 482 (501)
-|+.|-+++|+++ .+|+.++.+..|..||.+.|.+...++.++.+.+|+.|.+..|++. .+|+.+..| .|..||+++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 4678888999988 7888889888999999999999888888999999999999999998 788888855 488899999
Q ss_pred CcCcccCCccCC-CCCCc
Q 042915 483 NNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 483 N~l~g~lP~~~~-~~~L~ 499 (501)
|+++ .||-.|. |+.|+
T Consensus 221 Nkis-~iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQ 237 (722)
T ss_pred Ccee-ecchhhhhhhhhe
Confidence 9999 8999988 66654
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.73 E-value=4.1e-05 Score=85.97 Aligned_cols=82 Identities=18% Similarity=0.393 Sum_probs=46.1
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 482 (501)
+|+.|+|++|+|+ .+|..+. .+|+.|+|++|++...+..+. .+|+.|+|++|+|. .+|..+. ++|+.|+|++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 4455555555554 2333322 245555555555553222232 36777777777777 4666553 4677777777
Q ss_pred CcCcccCCccC
Q 042915 483 NNLDGQIPDGL 493 (501)
Q Consensus 483 N~l~g~lP~~~ 493 (501)
|+|+ .+|..+
T Consensus 293 N~Lt-~LP~~l 302 (754)
T PRK15370 293 NSIR-TLPAHL 302 (754)
T ss_pred Cccc-cCcccc
Confidence 7777 566543
No 32
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=2.7e-05 Score=54.81 Aligned_cols=37 Identities=38% Similarity=0.549 Sum_probs=26.6
Q ss_pred CCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCC
Q 042915 426 TALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFE 462 (501)
Q Consensus 426 ~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~ 462 (501)
++|++|++++|+|+...+++++|++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 4677888888888765555788888888888888877
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.66 E-value=7.5e-05 Score=88.59 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=58.0
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCC---------------------CCCEEEccCCc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLT---------------------ALETLHLENNQ 460 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~---------------------~L~~L~Ls~N~ 460 (501)
++|+.|+|++|...+.+|..+++|++|+.|+|++|...+.+|....++ +|+.|+|++|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 467777777777666777777788888888887765433444322333 45555555566
Q ss_pred CCccCccccCCCCCCCEEEccC-CcCcccCCccCC
Q 042915 461 FEGWIPQTLSQLPILREIFLQN-NNLDGQIPDGLW 494 (501)
Q Consensus 461 l~g~~P~~~~~l~~L~~L~Ls~-N~l~g~lP~~~~ 494 (501)
++ .+|..+..+++|+.|+|++ |+|. .+|..+.
T Consensus 858 i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~ 890 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNIS 890 (1153)
T ss_pred Cc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccc
Confidence 65 5666677777777777776 4444 5665544
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.66 E-value=6.9e-05 Score=84.20 Aligned_cols=84 Identities=25% Similarity=0.341 Sum_probs=64.5
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
.+|+.|+|++|++. .+|..+. .+|+.|+|++|+|+..+..+. ++|+.|+|++|+|+ .+|..+. ++|+.|+|+
T Consensus 241 ~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 241 DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 46888999999988 6676654 579999999999986443453 57999999999998 5666543 478889999
Q ss_pred CCcCcccCCccCC
Q 042915 482 NNNLDGQIPDGLW 494 (501)
Q Consensus 482 ~N~l~g~lP~~~~ 494 (501)
+|+|+ .+|..+.
T Consensus 313 ~N~Lt-~LP~~l~ 324 (754)
T PRK15370 313 SNSLT-ALPETLP 324 (754)
T ss_pred CCccc-cCCcccc
Confidence 99998 5776544
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.65 E-value=1e-05 Score=89.21 Aligned_cols=89 Identities=28% Similarity=0.402 Sum_probs=75.7
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 482 (501)
+|++|+|++|++. ..|..+..+.+|+.|+++.|-+...+-+..++.+|++|.|.+|++. .+|.++..+++|+.|+++.
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence 5889999999887 6788888889999999999988765556788899999999999888 8899999999999999999
Q ss_pred CcCcccCCccCC
Q 042915 483 NNLDGQIPDGLW 494 (501)
Q Consensus 483 N~l~g~lP~~~~ 494 (501)
|.+. .+|.-+.
T Consensus 124 N~f~-~~Pl~i~ 134 (1081)
T KOG0618|consen 124 NHFG-PIPLVIE 134 (1081)
T ss_pred hccC-CCchhHH
Confidence 9987 7887554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.64 E-value=6e-06 Score=80.58 Aligned_cols=90 Identities=27% Similarity=0.345 Sum_probs=73.9
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCcc-CccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGW-IPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~-~P~~~~~l~~L~~ 477 (501)
..+.+|+.||||+|.|+ .+-..-.+|-+++.|.|++|.+. .+..+++|.+|..||+++|+++.. --..+|++++|++
T Consensus 326 a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET 403 (490)
T ss_pred hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhhhhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence 45678999999999998 45555677889999999999986 344578899999999999999732 1247999999999
Q ss_pred EEccCCcCcccCCc
Q 042915 478 IFLQNNNLDGQIPD 491 (501)
Q Consensus 478 L~Ls~N~l~g~lP~ 491 (501)
|.|.+|+|.+ +|+
T Consensus 404 l~L~~NPl~~-~vd 416 (490)
T KOG1259|consen 404 LRLTGNPLAG-SVD 416 (490)
T ss_pred HhhcCCCccc-cch
Confidence 9999999994 553
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.61 E-value=5.6e-05 Score=84.80 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=42.6
Q ss_pred CCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 426 TALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 426 ~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
.+|+.|+|++|+|++.+ .. .++|+.|+|++|+|+ .+|... .+|+.|+|++|+|+ .||..++ ++.+
T Consensus 382 ~~L~~LdLs~N~Lt~LP-~l--~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L 447 (788)
T PRK15387 382 SGLKELIVSGNRLTSLP-VL--PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE 447 (788)
T ss_pred cccceEEecCCcccCCC-Cc--ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCC
Confidence 35667777777776533 22 246777788888877 466532 45777888888887 7887766 4443
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.42 E-value=7.6e-05 Score=78.00 Aligned_cols=88 Identities=30% Similarity=0.422 Sum_probs=59.4
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 482 (501)
+|+.|++++|++. .+|..+..++.|+.|++++|++....+..+.++.|+.|++++|++. .+|..+..+..|+.|.+++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 6777777777776 4555667777777777777777755555556777777777777777 6666665566677777777
Q ss_pred CcCcccCCccC
Q 042915 483 NNLDGQIPDGL 493 (501)
Q Consensus 483 N~l~g~lP~~~ 493 (501)
|++. .+|..+
T Consensus 219 N~~~-~~~~~~ 228 (394)
T COG4886 219 NSII-ELLSSL 228 (394)
T ss_pred Ccce-ecchhh
Confidence 7543 344433
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=7.7e-06 Score=71.40 Aligned_cols=90 Identities=21% Similarity=0.324 Sum_probs=74.0
Q ss_pred eeEEEecCCCCcccccCccc---ccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 402 TRVVSIDLKGFEISGTLPES---IGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~---~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
..+..++|+++.|- .+++. +.....|...+|++|.+...++.| ...+.++.|+|++|+++ .+|+.+..++.|+.
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 35667888998875 45544 455567778899999999888876 56678999999999999 89999999999999
Q ss_pred EEccCCcCcccCCccCC
Q 042915 478 IFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~~~ 494 (501)
|+++.|+|. ..|.-+.
T Consensus 105 lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIA 120 (177)
T ss_pred cccccCccc-cchHHHH
Confidence 999999998 6776554
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.38 E-value=6.6e-05 Score=75.56 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=58.4
Q ss_pred CeeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCcCCccCccccC-
Q 042915 401 HTRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQFEGWIPQTLS- 470 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~l~g~~P~~~~- 470 (501)
+.+|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++... .+..+++|+.|++++|.+.+.....+.
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 4568888888888874 234445566788888888888764322 246678888888888888752222222
Q ss_pred ----CCCCCCEEEccCCcCc
Q 042915 471 ----QLPILREIFLQNNNLD 486 (501)
Q Consensus 471 ----~l~~L~~L~Ls~N~l~ 486 (501)
..++|+.|++++|.++
T Consensus 244 ~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 244 ALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHhccCCCceEEEccCCCCC
Confidence 2368888888888875
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.30 E-value=6.7e-05 Score=78.41 Aligned_cols=85 Identities=36% Similarity=0.501 Sum_probs=44.6
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
.++.|+.|++++|++. .+|...+.++.|+.|++++|++...++....+..|+.|.+++|.+. ..+..+..+.++..|.
T Consensus 161 ~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 161 NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLE 238 (394)
T ss_pred ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccc
Confidence 3455555555555555 4444444555555555555555544433344444555555555433 3444455555555555
Q ss_pred ccCCcCc
Q 042915 480 LQNNNLD 486 (501)
Q Consensus 480 Ls~N~l~ 486 (501)
+.+|++.
T Consensus 239 l~~n~~~ 245 (394)
T COG4886 239 LSNNKLE 245 (394)
T ss_pred cCCceee
Confidence 5555554
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.21 E-value=9.2e-05 Score=74.51 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=65.3
Q ss_pred eeEEEecCCCCcccc----cCcccccCC-CCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCcCCc----cCcc
Q 042915 402 TRVVSIDLKGFEISG----TLPESIGNL-TALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQFEG----WIPQ 467 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g----~~p~~~~~L-~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~l~g----~~P~ 467 (501)
++|++|++++|++.+ .+...+..+ ++|+.|+|++|.+++... .+..+++|+.|+|++|.+++ .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 459999999998873 334456667 889999999999885322 25677889999999999884 2444
Q ss_pred ccCCCCCCCEEEccCCcCcc
Q 042915 468 TLSQLPILREIFLQNNNLDG 487 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g 487 (501)
.+..+++|++|+|++|.+++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHhCCCCCEEeccCCccCh
Confidence 56667799999999998863
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.17 E-value=0.00012 Score=83.55 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=67.5
Q ss_pred eeEEEecCCCCc--ccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 402 TRVVSIDLKGFE--ISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 402 ~~l~~L~Ls~n~--l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
+++++|-+..|. +.......|..|+.|+.|||++|.=-+.+| .++.|-+|++|+|+...+. .+|..+++|+.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 467777777775 443444457778888888888776656666 4678888888888888887 788888888888888
Q ss_pred EccCCcCcccCCccCC-CCCCc
Q 042915 479 FLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
++..+.-...+|..+. +++|+
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred ccccccccccccchhhhccccc
Confidence 8887665444544444 44443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.99 E-value=6.7e-05 Score=81.05 Aligned_cols=81 Identities=26% Similarity=0.263 Sum_probs=59.0
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
++.++.|+|++|+++..- .+..|+.|++|||+.|.+...+. ....++ |+.|.|++|.++. + ..+.+|++|+.||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t-L-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT-L-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh-h-hhHHhhhhhhccc
Confidence 457899999999998432 68889999999999999984333 223444 7777777777762 2 2466677777777
Q ss_pred ccCCcCc
Q 042915 480 LQNNNLD 486 (501)
Q Consensus 480 Ls~N~l~ 486 (501)
|+.|-|+
T Consensus 261 lsyNll~ 267 (1096)
T KOG1859|consen 261 LSYNLLS 267 (1096)
T ss_pred hhHhhhh
Confidence 7777765
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.93 E-value=0.00043 Score=73.02 Aligned_cols=87 Identities=28% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
.+.++..|++..|+|.+ +...+..+.+|++|+|++|+|+.. ..+..++.|+.|++++|.+. .+ ..+..+.+|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhh-cccchhhhhcchheeccccccccc-cchhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 35677778888888773 333366777888888888887643 34555666778888888776 22 2355577777778
Q ss_pred ccCCcCcccCCc
Q 042915 480 LQNNNLDGQIPD 491 (501)
Q Consensus 480 Ls~N~l~g~lP~ 491 (501)
+++|.+. .+..
T Consensus 169 l~~n~i~-~ie~ 179 (414)
T KOG0531|consen 169 LSYNRIV-DIEN 179 (414)
T ss_pred CCcchhh-hhhh
Confidence 8887776 4544
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.92 E-value=0.00036 Score=79.76 Aligned_cols=86 Identities=28% Similarity=0.284 Sum_probs=75.5
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
..++.|+.|||++|.=-+.+|..+++|-+|++|+|++..+...+..+++|+.|.+|++..+.-...+|.....|++|++|
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 35789999999998776799999999999999999999999777789999999999999998776777777889999999
Q ss_pred EccCCc
Q 042915 479 FLQNNN 484 (501)
Q Consensus 479 ~Ls~N~ 484 (501)
.+-.-.
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 886543
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00044 Score=71.00 Aligned_cols=97 Identities=24% Similarity=0.265 Sum_probs=55.1
Q ss_pred CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCC--cCCCCCCCCCEEEccCCcCCcc-Cc
Q 042915 390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI--PEMKTLTALETLHLENNQFEGW-IP 466 (501)
Q Consensus 390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~Ls~N~l~g~-~P 466 (501)
+|..|.......+.+..|+|..|...+.-......+..|+.|||++|++.... +..+.++.|+.|+++.+.+... .|
T Consensus 210 s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~ 289 (505)
T KOG3207|consen 210 SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEP 289 (505)
T ss_pred CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCC
Confidence 35544433334456667777777433333334455666777777777765443 2356677777777777766531 12
Q ss_pred cc-----cCCCCCCCEEEccCCcCc
Q 042915 467 QT-----LSQLPILREIFLQNNNLD 486 (501)
Q Consensus 467 ~~-----~~~l~~L~~L~Ls~N~l~ 486 (501)
+. ...+++|++|+++.|++.
T Consensus 290 d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 290 DVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred CccchhhhcccccceeeecccCccc
Confidence 22 234566777777777764
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.48 E-value=0.0033 Score=58.60 Aligned_cols=81 Identities=26% Similarity=0.369 Sum_probs=59.3
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCc--cccCCCCCCCEEE
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIP--QTLSQLPILREIF 479 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P--~~~~~l~~L~~L~ 479 (501)
....++|++|.+.. -+.|..++.|.+|.|++|+|+.+-|.+ ..+++|..|.|.+|.|. .+- +-+..|++|++|-
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 45678888888752 234677888888888888888877776 44677888888888876 221 2356677888888
Q ss_pred ccCCcCc
Q 042915 480 LQNNNLD 486 (501)
Q Consensus 480 Ls~N~l~ 486 (501)
+-+|+.+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 8888776
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.00023 Score=72.93 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=62.0
Q ss_pred CCeeEEEecCCCCcccc-cCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCc--cccCCCCCC
Q 042915 400 KHTRVVSIDLKGFEISG-TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIP--QTLSQLPIL 475 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P--~~~~~l~~L 475 (501)
.+++++.|.|+.|+|+- .+-..+..+++|+.|+|..|...+.-. +..-++.|+.|||++|++- ..+ ...+.++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccch
Confidence 45678888888888862 233445667888888998886222211 3456788999999999887 455 357788899
Q ss_pred CEEEccCCcCc
Q 042915 476 REIFLQNNNLD 486 (501)
Q Consensus 476 ~~L~Ls~N~l~ 486 (501)
+.|+++.+.+.
T Consensus 274 ~~Lnls~tgi~ 284 (505)
T KOG3207|consen 274 NQLNLSSTGIA 284 (505)
T ss_pred hhhhccccCcc
Confidence 99999988886
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.34 E-value=0.0011 Score=69.85 Aligned_cols=87 Identities=25% Similarity=0.313 Sum_probs=69.9
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
+..+..+++..|.+.. +-..+..+++|..|++..|+|......+..+++|++|+|++|.|+... .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 3456667788888773 445588899999999999999866555888999999999999998443 3667778999999
Q ss_pred cCCcCcccCCc
Q 042915 481 QNNNLDGQIPD 491 (501)
Q Consensus 481 s~N~l~g~lP~ 491 (501)
++|.|+ .++.
T Consensus 148 ~~N~i~-~~~~ 157 (414)
T KOG0531|consen 148 SGNLIS-DISG 157 (414)
T ss_pred ccCcch-hccC
Confidence 999998 5553
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0011 Score=65.03 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=64.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcC
Q 042915 359 PRDVVAMEELAKHFKNPPIDWNGDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL 438 (501)
Q Consensus 359 ~~d~~al~~~~~~~~~~~~~W~~d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l 438 (501)
..|++.+...........-.||.- ..|..|.|-..++++|+.|+|+.|.|...|...-..+.+|+.|-|.+..+
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~N~i------SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTGNLI------SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred chhHHHHHHHhhhhhhhhcccchh------ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 456655555444333222245432 25888888878899999999999998754443224567888888888777
Q ss_pred CCCCc-C-CCCCCCCCEEEccCCcC
Q 042915 439 WGQIP-E-MKTLTALETLHLENNQF 461 (501)
Q Consensus 439 ~~~~p-~-~~~l~~L~~L~Ls~N~l 461 (501)
...-- + +..++.++.|++|.|.+
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchh
Confidence 65433 2 47777888888887744
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.15 E-value=0.00035 Score=75.72 Aligned_cols=80 Identities=26% Similarity=0.347 Sum_probs=65.9
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccc-cCCCCCCCEEEcc
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQT-LSQLPILREIFLQ 481 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~-~~~l~~L~~L~Ls 481 (501)
+|...+.+.|.|. .+-.++.-++.|+.|||++|+++.. ..+..|+.|++|||+.|.|. .+|.. ...+ .|+.|.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 5666778888887 6777788899999999999999843 36788999999999999998 67763 3344 49999999
Q ss_pred CCcCc
Q 042915 482 NNNLD 486 (501)
Q Consensus 482 ~N~l~ 486 (501)
+|.++
T Consensus 241 nN~l~ 245 (1096)
T KOG1859|consen 241 NNALT 245 (1096)
T ss_pred ccHHH
Confidence 99987
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.96 E-value=0.005 Score=59.53 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=39.6
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCC--cCCCCCcC-CCCCCCCCEEEccCCcCCccCccc---cCCCCCCC
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGN--KLWGQIPE-MKTLTALETLHLENNQFEGWIPQT---LSQLPILR 476 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N--~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~---~~~l~~L~ 476 (501)
.++.|.+.+..++.. ..+..|++|+.|.+|.| ++.+.++- ...+++|++|+|+.|++. +++. +..+.+|.
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence 344444444444411 12445556666666666 44444332 234466666666666664 1222 23344555
Q ss_pred EEEccCCcCc
Q 042915 477 EIFLQNNNLD 486 (501)
Q Consensus 477 ~L~Ls~N~l~ 486 (501)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666655544
No 54
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.68 E-value=0.012 Score=40.97 Aligned_cols=34 Identities=47% Similarity=1.031 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHhcCCCC----CCCCC----CCCCCCCCCcceeeec
Q 042915 359 PRDVVAMEELAKHFKNPP----IDWNG----DPCLPWENSWTGVTCN 397 (501)
Q Consensus 359 ~~d~~al~~~~~~~~~~~----~~W~~----d~C~~~~~~w~gv~c~ 397 (501)
++|+.+|++||+.+...+ .+|+. +|| .|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence 578999999999987532 38974 455 79999995
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.25 E-value=0.012 Score=56.85 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=54.8
Q ss_pred CcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCC--cCCccCccccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 418 LPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENN--QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 418 ~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N--~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
+....-.+..|+.|.+.+..++ ..-.+..|++|+.|.+|.| +..+.++.....+++|++|+|++|++. ++..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee-ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence 4444455566777777776665 2335678899999999999 777777777777799999999999997 344443
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.17 E-value=0.019 Score=53.68 Aligned_cols=82 Identities=27% Similarity=0.277 Sum_probs=65.1
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCC--CcCCCCCCCCCEEEccCCcCCccCcc----ccCCCC
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ--IPEMKTLTALETLHLENNQFEGWIPQ----TLSQLP 473 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~--~p~~~~l~~L~~L~Ls~N~l~g~~P~----~~~~l~ 473 (501)
.+.+|..|.|++|.|+.+-|..-.-+++|+.|.|.+|+|... +..+..++.|++|.+-+|..+. -+. -+..++
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp 140 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLP 140 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc-ccCceeEEEEecC
Confidence 457899999999999966666556678899999999999754 3357889999999999998872 222 366788
Q ss_pred CCCEEEccC
Q 042915 474 ILREIFLQN 482 (501)
Q Consensus 474 ~L~~L~Ls~ 482 (501)
+|+.||.++
T Consensus 141 ~l~~LDF~k 149 (233)
T KOG1644|consen 141 SLRTLDFQK 149 (233)
T ss_pred cceEeehhh
Confidence 999998764
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.47 E-value=0.016 Score=34.18 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=7.6
Q ss_pred CCEEEccCCcCCccCcccc
Q 042915 451 LETLHLENNQFEGWIPQTL 469 (501)
Q Consensus 451 L~~L~Ls~N~l~g~~P~~~ 469 (501)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344333
No 58
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.09 E-value=0.0017 Score=61.69 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=75.7
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
....+++.||++.|++. .+...|..++.|..|+++.|++.-.+.+++.+..++.+++..|.++ ..|-+++.++.++.+
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 34568999999999987 5667788899999999999999866668899999999999999998 889999999999999
Q ss_pred EccCCcCc
Q 042915 479 FLQNNNLD 486 (501)
Q Consensus 479 ~Ls~N~l~ 486 (501)
++-+|.|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 99999875
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.05 E-value=0.085 Score=55.12 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=15.1
Q ss_pred CCCEEEccCCcCCccCccccCCCCCCCEEEccCC
Q 042915 450 ALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483 (501)
Q Consensus 450 ~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 483 (501)
+|+.|++++|... .+|+.+. .+|+.|.++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555555543 2333222 35555665554
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.00 E-value=0.037 Score=32.62 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=17.8
Q ss_pred CCCEEEccCCcCcccCCccCC
Q 042915 474 ILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 474 ~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
+|++|+|++|+|+ .||++|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 5899999999999 8998854
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.74 E-value=0.037 Score=61.98 Aligned_cols=88 Identities=19% Similarity=0.234 Sum_probs=61.5
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCC--cCCCCCCCCCEEEccCCcCCccC--c----cccCC
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI--PEMKTLTALETLHLENNQFEGWI--P----QTLSQ 471 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~Ls~N~l~g~~--P----~~~~~ 471 (501)
++++|..||+|+.+++.. ..++.|++|+.|-+.+=.+.... -++-+|++|+.||+|..+..... . +.-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 567888888888888733 55778888888877776654322 24678899999999987765321 1 12345
Q ss_pred CCCCCEEEccCCcCcccC
Q 042915 472 LPILREIFLQNNNLDGQI 489 (501)
Q Consensus 472 l~~L~~L~Ls~N~l~g~l 489 (501)
|+.|+.||.|++.+.+.+
T Consensus 249 LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEI 266 (699)
T ss_pred CccccEEecCCcchhHHH
Confidence 789999999988776443
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.94 E-value=0.031 Score=56.21 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=65.8
Q ss_pred CeeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CC-CCCCCCCEEEccCCcCCc----cCc
Q 042915 401 HTRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EM-KTLTALETLHLENNQFEG----WIP 466 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~-~~l~~L~~L~Ls~N~l~g----~~P 466 (501)
+++|+.|||..|-++. .+...++.+++|+.|+++.+.+...=. .+ ...++|+.|.|.+|.++. .+-
T Consensus 212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 4689999999999873 345678888999999999998864322 13 457899999999999863 223
Q ss_pred cccCCCCCCCEEEccCCcC
Q 042915 467 QTLSQLPILREIFLQNNNL 485 (501)
Q Consensus 467 ~~~~~l~~L~~L~Ls~N~l 485 (501)
..+...+.|..|+|++|++
T Consensus 292 ~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcchhhHHhcCCcccc
Confidence 3456678999999999998
No 63
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.82 E-value=0.094 Score=28.84 Aligned_cols=13 Identities=46% Similarity=0.519 Sum_probs=5.5
Q ss_pred CCCEEEccCCcCc
Q 042915 474 ILREIFLQNNNLD 486 (501)
Q Consensus 474 ~L~~L~Ls~N~l~ 486 (501)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 64
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.76 E-value=0.13 Score=31.43 Aligned_cols=22 Identities=50% Similarity=0.837 Sum_probs=16.0
Q ss_pred CCCCCEEEccCCcCcccCCccCC
Q 042915 472 LPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 472 l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
+++|+.|+|++|+|+ .||.+.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456788888888887 7776644
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.76 E-value=0.13 Score=31.43 Aligned_cols=22 Identities=50% Similarity=0.837 Sum_probs=16.0
Q ss_pred CCCCCEEEccCCcCcccCCccCC
Q 042915 472 LPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 472 l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
+++|+.|+|++|+|+ .||.+.+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 456788888888887 7776644
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=0.086 Score=52.18 Aligned_cols=84 Identities=30% Similarity=0.392 Sum_probs=52.5
Q ss_pred eeEEEecCCCCccc--ccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccC-ccccCCCCCCCE
Q 042915 402 TRVVSIDLKGFEIS--GTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWI-PQTLSQLPILRE 477 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~--g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~-P~~~~~l~~L~~ 477 (501)
.++++|+|.+|.|+ ..+...+.+|+.|+.|+|+.|++...|..+ ..+.+|+.|-|.+..+...- ...+..++.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 46677777777776 234444566777777777777776666555 46667777777776665432 223455666666
Q ss_pred EEccCCcC
Q 042915 478 IFLQNNNL 485 (501)
Q Consensus 478 L~Ls~N~l 485 (501)
|+++.|.+
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 66666643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=0.011 Score=57.88 Aligned_cols=78 Identities=29% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCEEEccCCcCCccCccc-----cCCC
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENNQFEGWIPQT-----LSQL 472 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~Ls~N~l~g~~P~~-----~~~l 472 (501)
+++-|+.|.||-|+|+..- .+..++.|+.|+|..|.|..+-. -+.++++|+.|+|..|.-.|.-+.. +.-|
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 4677888899999887432 26778889999999888864332 1588888999999888877766653 3456
Q ss_pred CCCCEEE
Q 042915 473 PILREIF 479 (501)
Q Consensus 473 ~~L~~L~ 479 (501)
++|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 6776664
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.20 E-value=0.11 Score=58.31 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=65.5
Q ss_pred CCCeeEEEecCCCCcccc-cCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCc-cCccccCCCCCCC
Q 042915 399 SKHTRVVSIDLKGFEISG-TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG-WIPQTLSQLPILR 476 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~ 476 (501)
..++.|++|.+++-.+.. .......++++|..||+|+.+++.. -.++.|++|+.|.+.+=.+.. ..=..+.+|++|+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 357899999999987742 2334457889999999999988744 457889999999887766652 1122577899999
Q ss_pred EEEccCCcCc
Q 042915 477 EIFLQNNNLD 486 (501)
Q Consensus 477 ~L~Ls~N~l~ 486 (501)
.||+|..+..
T Consensus 224 vLDIS~~~~~ 233 (699)
T KOG3665|consen 224 VLDISRDKNN 233 (699)
T ss_pred eeeccccccc
Confidence 9999977654
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.19 E-value=0.7 Score=39.53 Aligned_cols=76 Identities=16% Similarity=0.203 Sum_probs=26.9
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
+|+.+.+.++ +...-...|.++.+|+.+.+.+ .+..... .|..+++|+.+++..+ +...-...|.++ .|+.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 3444444443 3323333444444555555543 2221111 2444555555555443 332222334444 55555554
Q ss_pred C
Q 042915 482 N 482 (501)
Q Consensus 482 ~ 482 (501)
.
T Consensus 112 ~ 112 (129)
T PF13306_consen 112 S 112 (129)
T ss_dssp T
T ss_pred C
Confidence 3
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.18 E-value=0.25 Score=27.12 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=5.2
Q ss_pred CCCEEEccCCcCC
Q 042915 450 ALETLHLENNQFE 462 (501)
Q Consensus 450 ~L~~L~Ls~N~l~ 462 (501)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=0.031 Score=54.69 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=64.7
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCcc--ccCCCCCCCEEE
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ--TLSQLPILREIF 479 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~--~~~~l~~L~~L~ 479 (501)
.+++.|+.=+++|..+ ....+|+.|+.|.||=|+|+.. ..+..+++|+.|.|..|.|. .+-+ .+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 3444555555555421 2256799999999999999854 34778899999999999997 4443 478999999999
Q ss_pred ccCCcCcccCCcc
Q 042915 480 LQNNNLDGQIPDG 492 (501)
Q Consensus 480 Ls~N~l~g~lP~~ 492 (501)
|..|+-.|.-+..
T Consensus 95 L~ENPCc~~ag~n 107 (388)
T KOG2123|consen 95 LDENPCCGEAGQN 107 (388)
T ss_pred hccCCcccccchh
Confidence 9999988766543
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=87.55 E-value=0.1 Score=51.02 Aligned_cols=65 Identities=26% Similarity=0.394 Sum_probs=42.4
Q ss_pred cccCCCCCCeeecCCCcCCCCCcC-----CCCCCCCCEEEccCCcCCccCcc-ccC----CC---------CCCCEEEcc
Q 042915 421 SIGNLTALKHLRLGGNKLWGQIPE-----MKTLTALETLHLENNQFEGWIPQ-TLS----QL---------PILREIFLQ 481 (501)
Q Consensus 421 ~~~~L~~L~~L~Ls~N~l~~~~p~-----~~~l~~L~~L~Ls~N~l~g~~P~-~~~----~l---------~~L~~L~Ls 481 (501)
.+.++++|+..+||.|.+....|+ +++-+.|.+|.|++|.+. .+.. .++ .+ +.|+.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 456678888888888887655553 466777888888888775 2221 122 11 357777777
Q ss_pred CCcCc
Q 042915 482 NNNLD 486 (501)
Q Consensus 482 ~N~l~ 486 (501)
.|+|.
T Consensus 166 rNRle 170 (388)
T COG5238 166 RNRLE 170 (388)
T ss_pred cchhc
Confidence 78775
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.39 E-value=0.65 Score=39.70 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=52.6
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
.+|+.+.+.. .+...-...|.++++|+.+.+.++ +..... .|.++++|+.+.+.+ .+...-...|..+++|+.+.+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4677777774 566566677888889999999886 554433 378888899999976 444334456777899999999
Q ss_pred cCCcCcccCCccCC
Q 042915 481 QNNNLDGQIPDGLW 494 (501)
Q Consensus 481 s~N~l~g~lP~~~~ 494 (501)
..| +. .++...+
T Consensus 89 ~~~-~~-~i~~~~f 100 (129)
T PF13306_consen 89 PSN-IT-EIGSSSF 100 (129)
T ss_dssp TTT--B-EEHTTTT
T ss_pred Ccc-cc-EEchhhh
Confidence 766 54 4554433
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.26 E-value=0.76 Score=48.17 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=54.5
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC-cCCccCccccCCCCCCCEEE
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN-QFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N-~l~g~~P~~~~~l~~L~~L~ 479 (501)
.+++.|++++|.|+ .+|. + -.+|+.|.++++.--..+|+ + ..+|+.|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 56889999999887 4552 1 23699999988443334553 3 358999999998 554 5664 466677
Q ss_pred ccCCcC--cccCCccCC
Q 042915 480 LQNNNL--DGQIPDGLW 494 (501)
Q Consensus 480 Ls~N~l--~g~lP~~~~ 494 (501)
++.|.+ -+.+|.++.
T Consensus 119 L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 119 IKGSATDSIKNVPNGLT 135 (426)
T ss_pred eCCCCCcccccCcchHh
Confidence 776653 236887765
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.94 E-value=0.27 Score=49.66 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=52.1
Q ss_pred eeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCcCCccCcc----c
Q 042915 402 TRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQFEGWIPQ----T 468 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~l~g~~P~----~ 468 (501)
+.|..+.++.|.|.. .+-..+..+++|+.|||..|-++..-. .+..+++|+.|+++.|.++..=.. .
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 356667777776641 123345667777888888777753322 246667777777777777632211 1
Q ss_pred c-CCCCCCCEEEccCCcCc
Q 042915 469 L-SQLPILREIFLQNNNLD 486 (501)
Q Consensus 469 ~-~~l~~L~~L~Ls~N~l~ 486 (501)
+ ...++|+.|.|.+|.++
T Consensus 265 l~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhccCCCCceeccCcchhH
Confidence 2 23467778888877775
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.41 E-value=0.016 Score=55.30 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=65.3
Q ss_pred cccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 421 SIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 421 ~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
.+......+.||++.|++...-..+..++.|..|+++.|.+. .+|..++.+..+..+++.+|+++ ..|.+++ .+.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 456677889999999998766666888899999999999998 88999999999999999999998 8998887 5443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.23 E-value=0.97 Score=27.41 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=12.8
Q ss_pred CCCCCEEEccCCcCCccCcc
Q 042915 448 LTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 448 l~~L~~L~Ls~N~l~g~~P~ 467 (501)
|++|+.|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 456777777777777 4454
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.23 E-value=0.97 Score=27.41 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=12.8
Q ss_pred CCCCCEEEccCCcCCccCcc
Q 042915 448 LTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 448 l~~L~~L~Ls~N~l~g~~P~ 467 (501)
|++|+.|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 456777777777777 4454
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.88 E-value=1.2 Score=27.45 Aligned_cols=18 Identities=39% Similarity=0.803 Sum_probs=14.3
Q ss_pred CCCCEEEccCCcCcccCCc
Q 042915 473 PILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 473 ~~L~~L~Ls~N~l~g~lP~ 491 (501)
++|+.|++++|+|+ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888888 7886
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=72.59 E-value=3.6 Score=40.58 Aligned_cols=85 Identities=29% Similarity=0.386 Sum_probs=62.3
Q ss_pred CCeeEEEecCCCCcccccCccc----ccCCCCCCeeecCCCcCCCCCcC---------------CCCCCCCCEEEccCCc
Q 042915 400 KHTRVVSIDLKGFEISGTLPES----IGNLTALKHLRLGGNKLWGQIPE---------------MKTLTALETLHLENNQ 460 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~----~~~L~~L~~L~Ls~N~l~~~~p~---------------~~~l~~L~~L~Ls~N~ 460 (501)
++++++..+||.|.+....|+. +..-+.|++|.|++|.+. ++.. ...-+.|+.....+|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4579999999999998666654 456688999999999874 3221 2345789999999999
Q ss_pred CCccCccccC----CC-CCCCEEEccCCcCc
Q 042915 461 FEGWIPQTLS----QL-PILREIFLQNNNLD 486 (501)
Q Consensus 461 l~g~~P~~~~----~l-~~L~~L~Ls~N~l~ 486 (501)
+.. -|.... .. ..|+.+.+..|-|.
T Consensus 169 len-gs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 169 LEN-GSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred hcc-CcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 973 333222 11 37899999999876
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.95 E-value=4.8 Score=24.78 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=8.7
Q ss_pred CCCCEEEccCCcCc
Q 042915 473 PILREIFLQNNNLD 486 (501)
Q Consensus 473 ~~L~~L~Ls~N~l~ 486 (501)
++|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 82
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=65.92 E-value=1 Score=44.85 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=47.3
Q ss_pred eeEEEecCCCCccc---ccCcccccCCCCCCeeecCCCcC-C-CCCcCCCCCCCCCEEEccCCcCCccCccc---cCCCC
Q 042915 402 TRVVSIDLKGFEIS---GTLPESIGNLTALKHLRLGGNKL-W-GQIPEMKTLTALETLHLENNQFEGWIPQT---LSQLP 473 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~---g~~p~~~~~L~~L~~L~Ls~N~l-~-~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~---~~~l~ 473 (501)
.+|+.|+|++..-. ..+......+++|..||||.|.. + +.+.+|-+++.|++|.|++|.. .+|+. +...+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCc
Confidence 35667777764321 12223345677788888887653 2 1222466777888888877764 45553 45566
Q ss_pred CCCEEEccC
Q 042915 474 ILREIFLQN 482 (501)
Q Consensus 474 ~L~~L~Ls~ 482 (501)
+|.+|++.+
T Consensus 364 sl~yLdv~g 372 (419)
T KOG2120|consen 364 SLVYLDVFG 372 (419)
T ss_pred ceEEEEecc
Confidence 777777654
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.46 E-value=4.3 Score=23.99 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=9.1
Q ss_pred CCCCEEEccCCcCcc
Q 042915 473 PILREIFLQNNNLDG 487 (501)
Q Consensus 473 ~~L~~L~Ls~N~l~g 487 (501)
++|+.|+|++|+|+.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 567777777777653
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.32 E-value=4.1 Score=43.81 Aligned_cols=64 Identities=25% Similarity=0.222 Sum_probs=42.7
Q ss_pred CCeeEEEecCCCCccccc--CcccccCCCCCCeeecCCC--cCCCCCcCCCC--CCCCCEEEccCCcCCcc
Q 042915 400 KHTRVVSIDLKGFEISGT--LPESIGNLTALKHLRLGGN--KLWGQIPEMKT--LTALETLHLENNQFEGW 464 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~--~p~~~~~L~~L~~L~Ls~N--~l~~~~p~~~~--l~~L~~L~Ls~N~l~g~ 464 (501)
+.+.|.+++|++|+|... +...-...++|+.|+|++| .+.. -+++.+ ...|+.|.|.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~-~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS-ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc-hhhhhhhcCCCHHHeeecCCccccc
Confidence 456889999999998632 2222344578999999999 3332 223322 34588999999988643
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.77 E-value=1.9 Score=40.59 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=54.2
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCC--CcCC-CCCCCCCEEEccCCc-CCccCccccCCCCCCCE
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ--IPEM-KTLTALETLHLENNQ-FEGWIPQTLSQLPILRE 477 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~--~p~~-~~l~~L~~L~Ls~N~-l~g~~P~~~~~l~~L~~ 477 (501)
..++.++-++..|..+=-+.+.+++.|+.|.+.++.--+- +.-+ +-.++|+.|+|++|. |+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3678888888888765556677888888888887753211 1112 345789999999774 55333345667778877
Q ss_pred EEccC
Q 042915 478 IFLQN 482 (501)
Q Consensus 478 L~Ls~ 482 (501)
|.|.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 77654
No 86
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=56.19 E-value=1.5e+02 Score=26.79 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=45.6
Q ss_pred EeeccCCCeEEEEEEeeccCCCCCCCCCceEEEEcCeEEEEEEccccccCCcceEEEEEEEecCCceEEEEeecC---CC
Q 042915 87 VFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNN---DT 163 (501)
Q Consensus 87 ~~~~~~~~~ylvR~~F~~~~yd~~~~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~---~~ 163 (501)
+|.+++|..| +|+|.++. .-.......|.++......+.............+.+-+.+.+..+.+.|...+ +.
T Consensus 72 ~~~t~~G~~Y--~LtF~~~~--~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d~ 147 (159)
T PF04862_consen 72 TFTTVPGSTY--TLTFSLAR--NCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESDS 147 (159)
T ss_pred EEEccCCCEE--EEEEEecC--CCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCCC
Confidence 5777888888 78998882 21222347777765322222222111111134556777777778888886543 11
Q ss_pred CCCceeeeEEe
Q 042915 164 TSHPFISAIEL 174 (501)
Q Consensus 164 ~~~pFIn~iEl 174 (501)
.--|+|-.+.|
T Consensus 148 ~cGp~iDnV~v 158 (159)
T PF04862_consen 148 ACGPVIDNVSV 158 (159)
T ss_pred CceeEEEEEEe
Confidence 11267765554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=50.32 E-value=13 Score=23.08 Aligned_cols=14 Identities=57% Similarity=0.788 Sum_probs=10.1
Q ss_pred CCCCEEEccCCcCc
Q 042915 473 PILREIFLQNNNLD 486 (501)
Q Consensus 473 ~~L~~L~Ls~N~l~ 486 (501)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777788877774
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.64 E-value=12 Score=40.32 Aligned_cols=61 Identities=28% Similarity=0.402 Sum_probs=33.8
Q ss_pred CCCCCCeeecCCCcCCCCCc--CC-CCCCCCCEEEccCC--cCCccCccccCCCC--CCCEEEccCCcCc
Q 042915 424 NLTALKHLRLGGNKLWGQIP--EM-KTLTALETLHLENN--QFEGWIPQTLSQLP--ILREIFLQNNNLD 486 (501)
Q Consensus 424 ~L~~L~~L~Ls~N~l~~~~p--~~-~~l~~L~~L~Ls~N--~l~g~~P~~~~~l~--~L~~L~Ls~N~l~ 486 (501)
+.+.+..+.|++|+|...-. ++ ...++|+.|+|++| .+. . -.++..++ .|++|-|.+|+++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccc
Confidence 34556667777777754322 22 44567777777777 332 1 11233222 3667777777765
No 89
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=41.43 E-value=2 Score=42.84 Aligned_cols=85 Identities=27% Similarity=0.236 Sum_probs=62.6
Q ss_pred eeEEEecCCCCcccc-cCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCc-CCc-cCccccCCCCCCCE
Q 042915 402 TRVVSIDLKGFEISG-TLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ-FEG-WIPQTLSQLPILRE 477 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~-l~g-~~P~~~~~l~~L~~ 477 (501)
.+|+.||||+..|+. .+-..+..+.+|+.|.|.++++...+- .+++=.+|+.|+|+.+. ++. ...--+..++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 368899999988863 223345677889999999999987665 57888899999998764 331 11123668889999
Q ss_pred EEccCCcCc
Q 042915 478 IFLQNNNLD 486 (501)
Q Consensus 478 L~Ls~N~l~ 486 (501)
|+|+-+.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 999887765
No 90
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=38.11 E-value=18 Score=35.79 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=56.2
Q ss_pred EEccCCCCCCcccceEEecCc--c---ccccCCccccc--CC-CCCCCcceEEeecCCCCCceeEEeeccCCCeEEEEEE
Q 042915 30 LLSCGDTVGLTTGRLKFLPDK--D---FQFLGNTTTLK--QP-GLLPILSTLRFFTELQARKYCYVFNVTQGDKYLVRTT 101 (501)
Q Consensus 30 ~idCG~~~~~~~~~~~~~~D~--~---~~~~g~~~~~~--~~-~~~~~y~t~R~F~~~~~~~~cY~~~~~~~~~ylvR~~ 101 (501)
.++||.+.-++..|+.|..|. + -.+.|....+- +. .....|+|.|+=.+ .+-|..|+...|.|-+=+.
T Consensus 63 aVncGgdaavd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd~pik~dgdyalvlk 138 (355)
T KOG3593|consen 63 AVNCGGDAAVDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYDVPIKEDGDYALVLK 138 (355)
T ss_pred eeccCChhhhcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcccccccCCCceehhhh
Confidence 899999887788999999995 1 11223222221 11 11237999999754 4889999999899977788
Q ss_pred e--eccCCCCCCCCCceEEEEcC
Q 042915 102 Y--YYGGFDGGTQPPVFDQIIGG 122 (501)
Q Consensus 102 F--~~~~yd~~~~~~~F~v~~~~ 122 (501)
| .| |+. .+--.|||-++-
T Consensus 139 faevy--F~~-~q~kvfdvrln~ 158 (355)
T KOG3593|consen 139 FAEVY--FKT-CQHKVFDVRLNC 158 (355)
T ss_pred HHHHH--HHh-hhhhheeeeecc
Confidence 7 24 221 111259988774
No 91
>PHA01818 hypothetical protein
Probab=29.08 E-value=4.5e+02 Score=26.66 Aligned_cols=88 Identities=22% Similarity=0.393 Sum_probs=54.9
Q ss_pred cceEEecCccccccCCcccccCCCCCCCcceEEeecCCC----------CCceeEEeeccCCCeEEEEEEeeccCCCCCC
Q 042915 42 GRLKFLPDKDFQFLGNTTTLKQPGLLPILSTLRFFTELQ----------ARKYCYVFNVTQGDKYLVRTTYYYGGFDGGT 111 (501)
Q Consensus 42 ~~~~~~~D~~~~~~g~~~~~~~~~~~~~y~t~R~F~~~~----------~~~~cY~~~~~~~~~ylvR~~F~~~~yd~~~ 111 (501)
...-|++-..|+++|.....+.+- .-|.-+.+|.... ...-|=.|-+.-.++|.+-..|..|.-. -.
T Consensus 339 ~~~lwtga~~f~~~gt~e~l~~~i--~~y~yv~v~~t~~t~~~~~~~~~~~~~~h~fy~~g~~~~~~sg~~vs~d~~-~~ 415 (458)
T PHA01818 339 HKELWTGAQSFLSTGTTENLSDDI--SNYSYVEVYTTHKTTEKTKGNDNTGTICHKFYLDGSGTYVCSGTFVSGDRT-DT 415 (458)
T ss_pred hhhhhhcchhhcccCceeccccCc--cCceEEEEEEEccCCCCCCCCcccccceeeEEEcCCccEEEeeEEEeCCcc-cC
Confidence 344577777777777665554321 2466666664320 1234777877767899999999988521 23
Q ss_pred CCCceEEE-EcC----eEEEEEEccc
Q 042915 112 QPPVFDQI-IGG----TKWSIVDTAE 132 (501)
Q Consensus 112 ~~~~F~v~-~~~----~~~~~v~~~~ 132 (501)
.+|.|+++ +|. .-|..+....
T Consensus 416 ~~~~~~~yrvgv~f~~~tw~~~d~a~ 441 (458)
T PHA01818 416 KPPITEFYRVGVSFKGSTWTLVDSAV 441 (458)
T ss_pred CCCceeEEEEEEEecCceEEEeehhh
Confidence 46889987 444 3488877543
No 92
>PRK06764 hypothetical protein; Provisional
Probab=26.04 E-value=63 Score=25.85 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.1
Q ss_pred ceeEEeeccCCCeEEEEEE
Q 042915 83 KYCYVFNVTQGDKYLVRTT 101 (501)
Q Consensus 83 ~~cY~~~~~~~~~ylvR~~ 101 (501)
-+.||+...++|+|.||..
T Consensus 73 lnkyti~f~kpg~yvirvn 91 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeeEEEecCCccEEEEEc
Confidence 3789998888999999963
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.04 E-value=46 Score=42.95 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=28.1
Q ss_pred cCCCCcccccCcccccCCCCCCeeecCCCcCC
Q 042915 408 DLKGFEISGTLPESIGNLTALKHLRLGGNKLW 439 (501)
Q Consensus 408 ~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~ 439 (501)
||++|+|+...+..|..|++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999777778899999999999999875
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.67 E-value=58 Score=42.05 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.2
Q ss_pred ecCCCcCCCCCcC-CCCCCCCCEEEccCCcCC
Q 042915 432 RLGGNKLWGQIPE-MKTLTALETLHLENNQFE 462 (501)
Q Consensus 432 ~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~ 462 (501)
||++|+|+.+.+. |..|++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 6899999977774 789999999999999875
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=20.12 E-value=4.6 Score=43.44 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=16.5
Q ss_pred CCCCEEEccCCcCCcc----CccccCCCCCCCEEEccCCcC
Q 042915 449 TALETLHLENNQFEGW----IPQTLSQLPILREIFLQNNNL 485 (501)
Q Consensus 449 ~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l 485 (501)
..++.++++.|.+... +.+.+..+++++.|.+++|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 3445555555555431 222333444555555555544
Done!