Query 042915
Match_columns 501
No_of_seqs 425 out of 2640
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 19:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.8 4.4E-21 1.5E-25 176.4 6.6 146 193-350 5-171 (174)
2 2jwp_A Malectin, MGC80075; sug 99.8 1.6E-19 5.3E-24 166.1 15.3 144 28-178 7-172 (174)
3 1ogq_A PGIP-2, polygalacturona 99.6 3E-16 1E-20 157.3 9.8 139 357-498 3-151 (313)
4 4ecn_A Leucine-rich repeat pro 99.6 3.7E-15 1.3E-19 168.5 9.6 139 357-499 266-518 (876)
5 4eco_A Uncharacterized protein 99.5 9.6E-15 3.3E-19 160.4 10.6 137 358-499 28-276 (636)
6 3e6j_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 128.5 10.8 109 389-498 19-137 (229)
7 1w8a_A SLIT protein; signaling 99.4 5.3E-13 1.8E-17 123.9 10.0 111 389-499 8-129 (192)
8 3rgz_A Protein brassinosteroid 99.4 4.8E-13 1.7E-17 149.9 9.5 129 356-491 8-144 (768)
9 4fcg_A Uncharacterized protein 99.4 7.4E-14 2.5E-18 140.8 1.5 136 356-493 23-170 (328)
10 2o6r_A Variable lymphocyte rec 99.4 2.4E-12 8.1E-17 117.5 10.5 109 389-498 7-126 (177)
11 2wfh_A SLIT homolog 2 protein 99.4 2.9E-12 1E-16 119.1 11.1 108 389-498 10-128 (193)
12 3g39_A Variable lymphocyte rec 99.3 2.2E-12 7.5E-17 117.4 9.2 100 389-488 9-117 (170)
13 3rgz_A Protein brassinosteroid 99.3 1.1E-12 3.7E-17 147.1 7.9 95 398-492 628-723 (768)
14 2v70_A SLIT-2, SLIT homolog 2 99.3 3.7E-12 1.3E-16 120.9 10.2 93 402-494 57-150 (220)
15 2v9t_B SLIT homolog 2 protein 99.3 4.4E-12 1.5E-16 120.3 10.2 86 401-486 55-141 (220)
16 2v9t_B SLIT homolog 2 protein 99.3 7.7E-12 2.6E-16 118.6 11.3 89 398-486 76-165 (220)
17 2o6s_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 117.5 10.7 102 389-491 7-117 (208)
18 1w8a_A SLIT protein; signaling 99.3 3E-12 1E-16 118.8 7.8 92 399-490 51-143 (192)
19 2v70_A SLIT-2, SLIT homolog 2 99.3 9.5E-12 3.2E-16 118.0 10.0 111 389-499 11-132 (220)
20 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 113.4 9.7 101 390-491 13-122 (174)
21 1ogq_A PGIP-2, polygalacturona 99.2 2E-12 7E-17 129.2 3.2 96 399-494 73-170 (313)
22 4fcg_A Uncharacterized protein 99.2 9.9E-12 3.4E-16 125.2 7.6 102 397-499 201-304 (328)
23 3m19_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 114.5 11.2 87 400-486 105-192 (251)
24 3e6j_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 113.8 10.3 84 402-486 64-148 (229)
25 1p9a_G Platelet glycoprotein I 99.2 6.2E-11 2.1E-15 117.3 11.3 104 394-498 92-197 (290)
26 3m19_A Variable lymphocyte rec 99.2 6.9E-11 2.4E-15 114.0 11.2 100 398-498 79-181 (251)
27 3rfs_A Internalin B, repeat mo 99.2 7.8E-11 2.7E-15 115.1 11.2 91 400-490 131-222 (272)
28 3v47_A TOLL-like receptor 5B a 99.2 2.1E-11 7.1E-16 127.5 7.4 109 382-491 2-121 (455)
29 2o6s_A Variable lymphocyte rec 99.2 8.8E-11 3E-15 109.8 10.9 92 399-490 73-165 (208)
30 4g8a_A TOLL-like receptor 4; l 99.2 3.8E-11 1.3E-15 130.1 9.6 95 403-498 53-150 (635)
31 2je0_A Acidic leucine-rich nuc 99.2 2.4E-11 8.2E-16 107.4 6.2 104 393-499 33-143 (149)
32 2wfh_A SLIT homolog 2 protein 99.1 5.9E-11 2E-15 110.2 8.2 89 398-486 50-139 (193)
33 2o6r_A Variable lymphocyte rec 99.1 7.2E-11 2.5E-15 107.5 8.4 92 399-490 49-141 (177)
34 2ell_A Acidic leucine-rich nuc 99.1 3.7E-11 1.3E-15 108.5 6.3 104 393-499 40-150 (168)
35 3g39_A Variable lymphocyte rec 99.1 1.3E-10 4.4E-15 105.6 10.0 93 403-499 10-105 (170)
36 2o6q_A Variable lymphocyte rec 99.1 1.3E-10 4.4E-15 113.4 10.5 108 378-486 6-122 (270)
37 3rfs_A Internalin B, repeat mo 99.1 1.5E-10 5E-15 113.2 10.9 110 390-499 96-208 (272)
38 2ifg_A High affinity nerve gro 99.1 1.1E-10 3.7E-15 117.9 9.7 97 389-486 8-116 (347)
39 2xot_A Amphoterin-induced prot 99.1 1E-10 3.5E-15 119.2 9.3 91 401-492 63-154 (361)
40 1p9a_G Platelet glycoprotein I 99.1 2.4E-10 8.2E-15 113.0 11.7 99 399-499 74-175 (290)
41 2je0_A Acidic leucine-rich nuc 99.1 3.3E-11 1.1E-15 106.5 4.9 96 401-498 16-115 (149)
42 2xot_A Amphoterin-induced prot 99.1 1.4E-10 4.6E-15 118.3 10.1 101 390-491 75-180 (361)
43 4g8a_A TOLL-like receptor 4; l 99.1 1.2E-10 4E-15 126.2 10.0 104 390-493 87-193 (635)
44 2r9u_A Variable lymphocyte rec 99.1 2.3E-10 8E-15 104.4 9.9 91 405-499 15-108 (174)
45 1dce_A Protein (RAB geranylger 99.1 1E-10 3.4E-15 126.6 8.8 100 390-493 452-552 (567)
46 2z62_A TOLL-like receptor 4, v 99.1 2.9E-10 1E-14 110.9 10.2 105 390-494 63-170 (276)
47 3vq2_A TLR4, TOLL-like recepto 99.1 3E-10 1E-14 123.1 11.1 105 390-494 67-174 (606)
48 2id5_A Lingo-1, leucine rich r 99.1 3.5E-10 1.2E-14 119.2 10.9 91 403-493 33-124 (477)
49 2z81_A CD282 antigen, TOLL-lik 99.1 1.9E-10 6.5E-15 123.1 8.9 97 402-498 26-125 (549)
50 1ozn_A Reticulon 4 receptor; N 99.1 3.5E-10 1.2E-14 110.9 9.9 100 398-498 125-227 (285)
51 2ell_A Acidic leucine-rich nuc 99.1 1.1E-10 3.6E-15 105.4 5.5 95 398-493 67-166 (168)
52 3zyi_A Leucine-rich repeat-con 99.1 4.8E-10 1.7E-14 117.5 11.4 102 390-492 55-165 (452)
53 1ozn_A Reticulon 4 receptor; N 99.0 4.9E-10 1.7E-14 109.8 10.3 99 399-498 53-155 (285)
54 2o6q_A Variable lymphocyte rec 99.0 6.5E-10 2.2E-14 108.3 11.0 99 399-498 106-207 (270)
55 4b8c_D Glucose-repressible alc 99.0 7E-11 2.4E-15 131.6 4.2 93 399-493 244-336 (727)
56 1a9n_A U2A', U2A'; complex (nu 99.0 1.2E-10 4.2E-15 106.1 5.1 86 403-492 43-131 (176)
57 2z62_A TOLL-like receptor 4, v 99.0 4.6E-10 1.6E-14 109.5 9.5 101 398-498 48-151 (276)
58 3v47_A TOLL-like receptor 5B a 99.0 4.6E-10 1.6E-14 117.2 9.9 91 400-490 321-412 (455)
59 3vq2_A TLR4, TOLL-like recepto 99.0 5E-10 1.7E-14 121.4 9.9 100 399-498 53-155 (606)
60 4eco_A Uncharacterized protein 99.0 8.6E-11 2.9E-15 128.9 3.3 109 389-498 193-332 (636)
61 4b8c_D Glucose-repressible alc 99.0 3.2E-10 1.1E-14 126.2 7.8 99 398-499 220-319 (727)
62 2z66_A Variable lymphocyte rec 99.0 7.1E-10 2.4E-14 109.8 9.4 90 398-487 171-262 (306)
63 2z80_A TOLL-like receptor 2, v 99.0 6.8E-10 2.3E-14 112.4 9.1 96 402-498 52-151 (353)
64 2xwt_C Thyrotropin receptor; s 99.0 3.7E-10 1.3E-14 107.8 6.7 88 403-491 32-122 (239)
65 3t6q_A CD180 antigen; protein- 99.0 5.8E-10 2E-14 120.9 9.0 84 403-486 34-118 (606)
66 2id5_A Lingo-1, leucine rich r 99.0 9.4E-10 3.2E-14 115.8 10.3 93 398-491 76-169 (477)
67 2ifg_A High affinity nerve gro 99.0 9.9E-10 3.4E-14 110.8 9.4 86 406-494 12-100 (347)
68 4ezg_A Putative uncharacterize 99.0 4.6E-10 1.6E-14 104.1 6.3 88 401-490 87-175 (197)
69 1a9n_A U2A', U2A'; complex (nu 99.0 5.9E-10 2E-14 101.5 6.8 94 401-498 18-115 (176)
70 2z66_A Variable lymphocyte rec 99.0 7.1E-10 2.4E-14 109.8 7.8 101 398-498 122-225 (306)
71 1dce_A Protein (RAB geranylger 99.0 6.8E-10 2.3E-14 120.1 8.2 93 403-499 442-536 (567)
72 3j0a_A TOLL-like receptor 5; m 99.0 7E-10 2.4E-14 125.6 8.0 88 400-487 46-137 (844)
73 3zyj_A Leucine-rich repeat-con 99.0 1.5E-09 5.1E-14 113.4 10.0 101 390-491 44-153 (440)
74 2z63_A TOLL-like receptor 4, v 98.9 1.8E-09 6.2E-14 115.8 10.7 105 390-494 63-170 (570)
75 3t6q_A CD180 antigen; protein- 98.9 1.7E-09 5.9E-14 117.2 10.3 97 398-494 77-174 (606)
76 3oja_B Anopheles plasmodium-re 98.9 1.8E-09 6.3E-14 117.3 10.3 101 390-491 86-188 (597)
77 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.3E-09 4.3E-14 117.5 8.9 94 402-498 52-148 (562)
78 2z7x_B TOLL-like receptor 1, v 98.9 7E-10 2.4E-14 118.0 6.8 85 400-486 43-128 (520)
79 3o6n_A APL1; leucine-rich repe 98.9 2.2E-09 7.7E-14 110.0 10.3 100 390-490 80-181 (390)
80 4ecn_A Leucine-rich repeat pro 98.9 1.7E-10 5.9E-15 130.4 1.9 109 389-498 435-575 (876)
81 2ft3_A Biglycan; proteoglycan, 98.9 2.3E-09 7.8E-14 107.5 9.9 99 389-491 33-140 (332)
82 1wwl_A Monocyte differentiatio 98.9 2.5E-10 8.6E-15 113.8 2.8 87 399-486 118-214 (312)
83 1ziw_A TOLL-like receptor 3; i 98.9 1.5E-09 5.1E-14 119.4 8.9 93 400-492 71-164 (680)
84 2z81_A CD282 antigen, TOLL-lik 98.9 1.2E-09 4.1E-14 116.9 7.6 101 398-498 70-174 (549)
85 3oja_A Leucine-rich immune mol 98.9 1.4E-09 4.9E-14 115.4 7.9 96 400-498 142-239 (487)
86 1xku_A Decorin; proteoglycan, 98.9 2.9E-09 9.9E-14 106.6 9.6 95 389-486 31-134 (330)
87 1ziw_A TOLL-like receptor 3; i 98.9 2E-09 7E-14 118.3 9.2 100 399-498 46-147 (680)
88 2z80_A TOLL-like receptor 2, v 98.9 1.9E-09 6.4E-14 109.1 8.0 109 390-498 87-200 (353)
89 3o53_A Protein LRIM1, AGAP0063 98.9 2.1E-09 7.1E-14 107.3 8.0 91 401-494 143-234 (317)
90 4ezg_A Putative uncharacterize 98.9 1.1E-09 3.6E-14 101.7 5.2 96 399-498 63-161 (197)
91 3oja_B Anopheles plasmodium-re 98.9 3.9E-09 1.3E-13 114.7 10.4 94 390-486 110-205 (597)
92 3zyi_A Leucine-rich repeat-con 98.9 4.4E-09 1.5E-13 110.2 10.3 93 398-491 119-213 (452)
93 3zyj_A Leucine-rich repeat-con 98.9 4.9E-09 1.7E-13 109.5 10.4 93 398-491 108-202 (440)
94 4ay9_X Follicle-stimulating ho 98.9 1.6E-09 5.3E-14 109.8 6.3 105 388-493 8-123 (350)
95 3o6n_A APL1; leucine-rich repe 98.9 5.7E-09 2E-13 106.9 10.6 93 391-486 105-199 (390)
96 2z63_A TOLL-like receptor 4, v 98.9 3.3E-09 1.1E-13 113.8 8.3 93 399-491 442-536 (570)
97 1xku_A Decorin; proteoglycan, 98.8 4.6E-09 1.6E-13 105.1 8.8 88 402-491 192-280 (330)
98 2xwt_C Thyrotropin receptor; s 98.8 2.5E-09 8.7E-14 102.0 6.1 102 391-494 68-176 (239)
99 3oja_A Leucine-rich immune mol 98.8 3.4E-09 1.2E-13 112.5 7.0 105 389-498 109-216 (487)
100 1h6t_A Internalin B; cell adhe 98.8 6.7E-09 2.3E-13 102.5 8.5 86 400-491 132-217 (291)
101 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 6.7E-09 2.3E-13 111.8 8.2 87 399-487 73-160 (562)
102 3j0a_A TOLL-like receptor 5; m 98.8 5.8E-09 2E-13 118.0 8.1 94 400-493 71-168 (844)
103 4glp_A Monocyte differentiatio 98.8 1.9E-09 6.5E-14 107.2 3.6 87 400-491 195-289 (310)
104 2ft3_A Biglycan; proteoglycan, 98.8 2E-08 6.9E-13 100.5 11.1 83 401-485 77-159 (332)
105 1h6u_A Internalin H; cell adhe 98.8 1.1E-08 3.9E-13 101.7 8.8 88 398-491 103-190 (308)
106 2z7x_B TOLL-like receptor 1, v 98.8 5.2E-09 1.8E-13 111.3 6.6 97 399-498 345-446 (520)
107 1h6t_A Internalin B; cell adhe 98.8 1.1E-08 3.8E-13 100.9 8.4 95 398-499 108-203 (291)
108 1h6u_A Internalin H; cell adhe 98.8 1.1E-08 3.8E-13 101.8 8.1 88 400-493 149-236 (308)
109 1xeu_A Internalin C; cellular 98.8 1.5E-08 5E-13 98.6 8.5 93 398-498 81-174 (263)
110 1wwl_A Monocyte differentiatio 98.7 3.9E-09 1.3E-13 105.1 4.2 104 390-494 160-273 (312)
111 4glp_A Monocyte differentiatio 98.7 7.6E-09 2.6E-13 102.8 6.1 92 399-491 114-214 (310)
112 3o53_A Protein LRIM1, AGAP0063 98.7 1.1E-08 3.6E-13 102.2 7.0 104 390-498 110-216 (317)
113 4fmz_A Internalin; leucine ric 98.7 9.9E-09 3.4E-13 103.2 6.6 90 398-490 239-328 (347)
114 1xeu_A Internalin C; cellular 98.7 2.5E-08 8.5E-13 97.0 9.1 85 402-492 106-190 (263)
115 1m9s_A Internalin B; cell inva 98.7 2E-08 6.9E-13 109.3 9.4 86 399-490 128-213 (605)
116 1m9s_A Internalin B; cell inva 98.7 2E-08 6.7E-13 109.4 7.8 95 398-499 105-200 (605)
117 1o6v_A Internalin A; bacterial 98.6 4.9E-08 1.7E-12 102.6 8.0 88 399-492 306-393 (466)
118 3cvr_A Invasion plasmid antige 98.6 2.8E-08 9.7E-13 107.3 5.0 87 400-494 158-251 (571)
119 4fmz_A Internalin; leucine ric 98.6 4.5E-08 1.5E-12 98.3 5.8 95 399-498 218-313 (347)
120 3cvr_A Invasion plasmid antige 98.6 1E-07 3.6E-12 102.9 8.7 88 400-499 138-233 (571)
121 1o6v_A Internalin A; bacterial 98.5 6.4E-08 2.2E-12 101.7 6.9 87 399-490 284-370 (466)
122 3bz5_A Internalin-J, INLJ; leu 98.5 1.7E-07 5.6E-12 98.6 9.0 84 398-490 60-143 (457)
123 3bz5_A Internalin-J, INLJ; leu 98.5 2.1E-07 7.2E-12 97.8 9.4 78 401-486 169-246 (457)
124 1jl5_A Outer protein YOPM; leu 98.5 4.1E-07 1.4E-11 95.5 10.2 83 402-492 173-255 (454)
125 1ds9_A Outer arm dynein; leuci 98.4 1E-09 3.6E-14 101.8 -9.1 89 401-491 69-158 (198)
126 2ast_B S-phase kinase-associat 98.4 1.5E-08 5E-13 101.3 -2.1 82 402-483 118-205 (336)
127 1ds9_A Outer arm dynein; leuci 98.4 4.4E-09 1.5E-13 97.5 -5.9 97 397-498 43-142 (198)
128 1jl5_A Outer protein YOPM; leu 98.4 5.1E-07 1.7E-11 94.8 8.9 96 391-498 143-239 (454)
129 3g06_A SSPH2 (leucine-rich rep 98.4 1.8E-07 6.1E-12 102.1 5.4 84 402-493 221-304 (622)
130 3g06_A SSPH2 (leucine-rich rep 98.4 7.7E-07 2.6E-11 97.1 9.2 86 402-499 201-287 (622)
131 2ca6_A RAN GTPase-activating p 98.2 1.1E-07 3.9E-12 97.1 -0.4 94 400-493 185-298 (386)
132 2ast_B S-phase kinase-associat 98.2 4.8E-08 1.6E-12 97.5 -3.2 101 399-499 139-250 (336)
133 2ca6_A RAN GTPase-activating p 98.2 1.2E-07 4.3E-12 96.8 -0.5 91 400-490 214-320 (386)
134 3rw6_A Nuclear RNA export fact 98.2 3.6E-07 1.2E-11 89.0 2.7 78 401-479 169-257 (267)
135 3goz_A Leucine-rich repeat-con 98.1 2.5E-07 8.4E-12 93.9 -0.7 87 401-487 49-152 (362)
136 3rw6_A Nuclear RNA export fact 98.1 8.4E-07 2.9E-11 86.4 2.8 83 407-491 148-238 (267)
137 3sb4_A Hypothetical leucine ri 98.0 5.3E-06 1.8E-10 82.8 6.9 95 402-499 226-324 (329)
138 3goz_A Leucine-rich repeat-con 98.0 8.1E-07 2.8E-11 90.1 0.0 90 401-490 21-126 (362)
139 4ay9_X Follicle-stimulating ho 98.0 5.8E-06 2E-10 83.4 5.9 85 402-491 154-241 (350)
140 1z7x_W Ribonuclease inhibitor; 97.9 6.8E-07 2.3E-11 93.1 -1.9 87 402-488 313-413 (461)
141 1z7x_W Ribonuclease inhibitor; 97.7 1.1E-06 3.6E-11 91.6 -4.7 94 401-494 283-395 (461)
142 3un9_A NLR family member X1; l 97.6 6.3E-06 2.1E-10 84.2 -0.6 86 402-487 155-253 (372)
143 3un9_A NLR family member X1; l 97.5 1.7E-05 5.9E-10 80.9 0.1 87 401-487 125-225 (372)
144 3sb4_A Hypothetical leucine ri 97.3 0.00026 8.8E-09 70.4 7.0 64 425-491 225-290 (329)
145 1io0_A Tropomodulin; LRR prote 97.3 3.5E-05 1.2E-09 70.5 0.5 86 401-486 64-164 (185)
146 3ogk_B Coronatine-insensitive 97.3 2.2E-05 7.4E-10 84.4 -1.6 88 401-488 435-528 (592)
147 1io0_A Tropomodulin; LRR prote 97.2 3.7E-05 1.3E-09 70.3 -0.5 85 402-486 36-136 (185)
148 3e4g_A ATP synthase subunit S, 97.0 0.00014 4.9E-09 65.9 0.6 83 402-484 61-150 (176)
149 3ogk_B Coronatine-insensitive 96.7 0.00037 1.2E-08 74.7 1.4 85 403-489 221-309 (592)
150 2p1m_B Transport inhibitor res 96.6 0.00014 4.7E-09 78.0 -2.8 85 401-486 431-519 (594)
151 3rfe_A Platelet glycoprotein I 96.5 0.0045 1.5E-07 53.0 6.7 55 406-462 12-68 (130)
152 2p1m_B Transport inhibitor res 96.4 0.00032 1.1E-08 75.1 -1.6 83 401-483 129-221 (594)
153 4fdw_A Leucine rich hypothetic 96.2 0.0073 2.5E-07 62.0 7.3 91 400-494 269-365 (401)
154 2ra8_A Uncharacterized protein 95.8 0.0014 4.7E-08 66.5 -0.3 62 425-486 251-320 (362)
155 3rfe_A Platelet glycoprotein I 95.8 0.014 4.7E-07 49.9 6.0 36 403-438 32-67 (130)
156 2ra8_A Uncharacterized protein 95.5 0.0024 8.1E-08 64.8 0.0 87 401-487 192-293 (362)
157 4fdw_A Leucine rich hypothetic 95.1 0.04 1.4E-06 56.4 7.9 89 400-494 178-267 (401)
158 1pgv_A TMD-1, tropomodulin TMD 94.3 0.011 3.8E-07 54.4 1.0 84 402-485 70-169 (197)
159 3e4g_A ATP synthase subunit S, 92.8 0.032 1.1E-06 50.3 1.4 61 426-486 61-128 (176)
160 4h09_A Hypothetical leucine ri 92.2 0.3 1E-05 48.8 7.9 87 401-491 262-349 (379)
161 4fs7_A Uncharacterized protein 91.7 0.17 5.9E-06 51.1 5.5 93 401-498 296-390 (394)
162 4gt6_A Cell surface protein; l 91.3 0.39 1.3E-05 48.4 7.7 81 402-485 288-369 (394)
163 4h09_A Hypothetical leucine ri 91.1 0.29 1E-05 48.9 6.5 72 400-473 284-356 (379)
164 4gt6_A Cell surface protein; l 91.0 0.58 2E-05 47.1 8.6 93 401-498 264-359 (394)
165 1pgv_A TMD-1, tropomodulin TMD 89.4 0.061 2.1E-06 49.4 -0.3 83 402-484 41-137 (197)
166 4fs7_A Uncharacterized protein 82.1 1.9 6.5E-05 43.2 6.4 76 419-498 290-368 (394)
167 2w3j_A Carbohydrate binding mo 57.4 87 0.003 26.4 13.5 92 81-179 38-131 (145)
168 2o14_A Hypothetical protein YX 53.7 1.6E+02 0.0056 28.9 13.3 79 86-179 78-157 (375)
169 2w47_A Lipolytic enzyme, G-D-S 49.1 1.2E+02 0.004 25.4 14.1 93 81-178 39-132 (144)
170 2wz8_A Cellulosome protein doc 42.7 1.6E+02 0.0054 25.1 11.0 92 85-177 50-149 (156)
171 2w87_A Esterase D, XYL-CBM35; 30.7 2.3E+02 0.0078 23.4 11.3 88 81-176 38-130 (139)
172 2vzp_A Aocbm35, EXO-beta-D-glu 28.7 2.3E+02 0.0078 22.8 12.9 86 81-174 38-127 (127)
173 2w3j_A Carbohydrate binding mo 25.4 38 0.0013 28.7 2.7 39 260-302 40-78 (145)
174 2wz8_A Cellulosome protein doc 23.7 56 0.0019 28.1 3.4 42 260-301 48-96 (156)
175 2vzp_A Aocbm35, EXO-beta-D-glu 21.6 49 0.0017 27.0 2.6 39 260-302 40-78 (127)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.82 E-value=4.4e-21 Score=176.42 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=102.4
Q ss_pred EEEeeeecCCCCCCCCCCCCCCccccCCCCCC--Ccee-cccccCCCCCCCCCcHHHHhhcccCCCCcceEEecCCCCCC
Q 042915 193 SSIARSSFGDDARISFPDDLFNRKWNSFKDLN--PVEE-NKNKVNPEDFWNKPPAKAFLSSITTTKGKPLQIQWPPGPLP 269 (501)
Q Consensus 193 ~~~~R~n~G~~~~ir~~dD~~dR~W~~~~~~~--~~~~-~~~~i~~~~~~~~~P~~V~~TA~~~~~~~~~~ltw~~~~~~ 269 (501)
+++||+||||+. +. |..+|+|.+|.... .... ....+.. ...+.+|..||+|||.+.. +++|.|++++
T Consensus 5 ~~~~~INcGg~~-~~---d~~gr~w~~D~~~~~~g~~~~~~~~~~~-~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~ 75 (174)
T 2jwp_A 5 KVIWAVNAGGES-HV---DVHGIHYRKDPLEGRVGRASDYGMKLPI-LRSNPEDQVLYQTERYNED----SFGYDIPIKE 75 (174)
T ss_dssp HEEEEEEETSSS-EE---ETTTEEECSSCSSTTCCCCCCCCTTSCC-SSSCHHHHHTTTCCCCCCS----CEEEEEECCS
T ss_pred cEEEEEECCCCC-cc---CCCCCEEcCCcCcccCCcccccccceEe-cccCCCCchhhhhhccCCC----CeEEEEEeCC
Confidence 589999999963 32 67899999985421 1100 0111111 1235678999999987542 6899999998
Q ss_pred CccEEEEEEeeecCCCCCCCceEEEEEECCcccccccccccc---cceeeeccc---------------ccCcceEEEEc
Q 042915 270 NSRYYIALYFQENRAPSPESWRVFNVSVNGNTFFKDLNVTTN---GVAVYGNEW---------------PLSGQTNITMT 331 (501)
Q Consensus 270 ~~~y~v~lhF~e~~~~~~~~~R~F~I~in~~~~~~~~~~~~~---~~~~~~~~~---------------~~~g~~~l~l~ 331 (501)
+..|+|||||||+.... .++|+|||||||+++.+++|+... +.++++++. ..+|.++|.+.
T Consensus 76 ~G~Y~VrLhF~ei~~~~-~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~ 154 (174)
T 2jwp_A 76 EGEYVLVLKFAEVYFAQ-SQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFV 154 (174)
T ss_dssp CEEEEEEEEEECCSCCC-SSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEE
T ss_pred CeEEEEEEEEeccccCC-CCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEe
Confidence 89999999999997553 578999999999999998987543 224433321 23456788887
Q ss_pred cCCCCCCCcccccccceec
Q 042915 332 PRNDMPVGPIISAGEIFQL 350 (501)
Q Consensus 332 ~~~~s~lpp~ln~lei~~~ 350 (501)
+.. .-.|+|||+||++-
T Consensus 155 p~~--~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 155 KGY--YDNPKVCALFIMKG 171 (174)
T ss_dssp CSS--SCSSSEEEEEEESS
T ss_pred ccC--CCCcEEEEEEEEeC
Confidence 642 34699999999963
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.82 E-value=1.6e-19 Score=166.06 Aligned_cols=144 Identities=14% Similarity=0.180 Sum_probs=101.5
Q ss_pred ceEEccCCCCCCcccceEEecCccccccCCcc----cc--cCCC--CCCCcceEEeecCCCCCceeEEeeccCCCeEEEE
Q 042915 28 DFLLSCGDTVGLTTGRLKFLPDKDFQFLGNTT----TL--KQPG--LLPILSTLRFFTELQARKYCYVFNVTQGDKYLVR 99 (501)
Q Consensus 28 ~f~idCG~~~~~~~~~~~~~~D~~~~~~g~~~----~~--~~~~--~~~~y~t~R~F~~~~~~~~cY~~~~~~~~~ylvR 99 (501)
.|.||||++...+.+||+|.+|..|...|... .+ .... ...+|+|||+|+.. .+|.||+.++|+|+||
T Consensus 7 ~~~INcGg~~~~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~~----~tY~f~v~~~G~Y~Vr 82 (174)
T 2jwp_A 7 IWAVNAGGESHVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNEDS----FGYDIPIKEEGEYVLV 82 (174)
T ss_dssp EEEEEETSSSEEETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCSC----EEEEEECCSCEEEEEE
T ss_pred EEEEECCCCCccCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCCC----eEEEEEeCCCeEEEEE
Confidence 57999999775557899999998765333211 11 1111 12389999999863 8999999988999999
Q ss_pred EEeeccCCCCCCCCCceEEEEcCeE-EEEEEccccccCCcceEEEEEEEe-------------cCCceEEEEeecCCCCC
Q 042915 100 TTYYYGGFDGGTQPPVFDQIIGGTK-WSIVDTAEDFANGLSSYYEVVVAA-------------VGNSLSVCLARNNDTTS 165 (501)
Q Consensus 100 ~~F~~~~yd~~~~~~~F~v~~~~~~-~~~v~~~~~~~~~~~~~~E~i~~~-------------~~~~l~vcf~~~~~~~~ 165 (501)
|||....|.... ...|||++++.. ...+++........++.||+.+.+ .+++|.|+|.|....
T Consensus 83 LhF~ei~~~~~~-~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~-- 159 (174)
T 2jwp_A 83 LKFAEVYFAQSQ-QKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD-- 159 (174)
T ss_dssp EEEECCSCCCSS-SSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC--
T ss_pred EEEeccccCCCC-CeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC--
Confidence 999988776432 356999998743 333444222112236788887763 567899999985444
Q ss_pred CceeeeEEeeecC
Q 042915 166 HPFISAIELSKLD 178 (501)
Q Consensus 166 ~pFIn~iEl~~l~ 178 (501)
.||||||||++-+
T Consensus 160 ~a~inaIEI~~~~ 172 (174)
T 2jwp_A 160 NPKVCALFIMKGT 172 (174)
T ss_dssp SSSEEEEEEESSC
T ss_pred CcEEEEEEEEeCc
Confidence 7999999999743
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=3e-16 Score=157.28 Aligned_cols=139 Identities=35% Similarity=0.622 Sum_probs=108.5
Q ss_pred CcchhHHHHHHHHHhcCCCC--CCCCC--CCCCCCCCCcceeeecCCC-CeeEEEecCCCCcccc--cCcccccCCCCCC
Q 042915 357 TFPRDVVAMEELAKHFKNPP--IDWNG--DPCLPWENSWTGVTCNKSK-HTRVVSIDLKGFEISG--TLPESIGNLTALK 429 (501)
Q Consensus 357 t~~~d~~al~~~~~~~~~~~--~~W~~--d~C~~~~~~w~gv~c~~~~-l~~l~~L~Ls~n~l~g--~~p~~~~~L~~L~ 429 (501)
+.++|..||+++|+.+..+. .+|.. ++|. +.|.||.|.... ..+|+.|+|++|++.+ .+|..+.++++|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 67789999999999986532 37863 4552 359999997432 2589999999999998 8888888899999
Q ss_pred eeecCC-CcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 430 HLRLGG-NKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 430 ~L~Ls~-N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
+|+|++ |.+.+.+| .++++++|++|+|++|++++.+|..++.+++|++|+|++|.+++.+|..+. +++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 999984 88887777 478888888888888888777787787788888888888887777777665 5544
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=3.7e-15 Score=168.50 Aligned_cols=139 Identities=27% Similarity=0.443 Sum_probs=116.2
Q ss_pred CcchhHHHHHHHHHhcCCCCCCCCCCC----CCCCCCCc------------ceeeecCCCCeeEEEecCCCCcccccCcc
Q 042915 357 TFPRDVVAMEELAKHFKNPPIDWNGDP----CLPWENSW------------TGVTCNKSKHTRVVSIDLKGFEISGTLPE 420 (501)
Q Consensus 357 t~~~d~~al~~~~~~~~~~~~~W~~d~----C~~~~~~w------------~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~ 420 (501)
+...|+.||++||+.+..+ +|+.+. +.|..|.| .||.|+. ..+|+.|+|++|+|.|.+|+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~--~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT--TSCEEEEECTTTCCEEEECG
T ss_pred cchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecC--CCCEEEEECccCCCCCcCch
Confidence 4467999999999998654 786432 22334789 9999975 36899999999999999999
Q ss_pred cccCCCCCCeeec-CCCcCCCC----------------------------------------------------------
Q 042915 421 SIGNLTALKHLRL-GGNKLWGQ---------------------------------------------------------- 441 (501)
Q Consensus 421 ~~~~L~~L~~L~L-s~N~l~~~---------------------------------------------------------- 441 (501)
.+++|++|+.|+| ++|.+.|.
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 77755443
Q ss_pred ------------------Cc-CCCCCCCCCEEEccCCcCCc-----------------cCccccC--CCCCCCEEEccCC
Q 042915 442 ------------------IP-EMKTLTALETLHLENNQFEG-----------------WIPQTLS--QLPILREIFLQNN 483 (501)
Q Consensus 442 ------------------~p-~~~~l~~L~~L~Ls~N~l~g-----------------~~P~~~~--~l~~L~~L~Ls~N 483 (501)
+| .+++|++|+.|+|++|+++| .+|..++ ++++|+.|+|++|
T Consensus 422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 45 57889999999999999998 4999988 9999999999999
Q ss_pred cCcccCCccCC-CCCCc
Q 042915 484 NLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 484 ~l~g~lP~~~~-~~~L~ 499 (501)
++.|.+|..+. +++|+
T Consensus 502 ~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp TTCCSCCGGGGGCSSCC
T ss_pred CCCccChHHHhCCCCCC
Confidence 99999998887 66654
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.54 E-value=9.6e-15 Score=160.39 Aligned_cols=137 Identities=27% Similarity=0.416 Sum_probs=114.4
Q ss_pred cchhHHHHHHHHHhcCCCCC-----------CCCCCCCCCCCCCc---ceeeecCCCCeeEEEecCCCCcccccCccccc
Q 042915 358 FPRDVVAMEELAKHFKNPPI-----------DWNGDPCLPWENSW---TGVTCNKSKHTRVVSIDLKGFEISGTLPESIG 423 (501)
Q Consensus 358 ~~~d~~al~~~~~~~~~~~~-----------~W~~d~C~~~~~~w---~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~ 423 (501)
...|+.||.+++..+..+.| +|+.+. ..|.| .||.|+.. .+|+.|+|++|++.|.+|+.++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~---~~c~w~~~~GV~C~~~--~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK---ELDMWGAQPGVSLNSN--GRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS---CGGGTTCCTTEEECTT--CCEEEEECTTSCCEEEECGGGG
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC---CcccccCCCCeEEcCC--CCEEEEEecCcccCCcCChHHh
Confidence 45799999999998876543 354221 12579 99999754 6999999999999999999999
Q ss_pred CCCCCCeeecCCCc------------------------------------------------------------------
Q 042915 424 NLTALKHLRLGGNK------------------------------------------------------------------ 437 (501)
Q Consensus 424 ~L~~L~~L~Ls~N~------------------------------------------------------------------ 437 (501)
+|++|+.|+|++|.
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 99999999999984
Q ss_pred ------------CCCCCcCCCCCCCCCEEEccCCcCCcc-----------------CccccC--CCCCCCEEEccCCcCc
Q 042915 438 ------------LWGQIPEMKTLTALETLHLENNQFEGW-----------------IPQTLS--QLPILREIFLQNNNLD 486 (501)
Q Consensus 438 ------------l~~~~p~~~~l~~L~~L~Ls~N~l~g~-----------------~P~~~~--~l~~L~~L~Ls~N~l~ 486 (501)
++|+++.++++++|+.|+|++|+++|. +|..++ ++++|++|+|++|++.
T Consensus 183 l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 345333588999999999999999986 999999 9999999999999999
Q ss_pred ccCCccCC-CCCCc
Q 042915 487 GQIPDGLW-KPGLN 499 (501)
Q Consensus 487 g~lP~~~~-~~~L~ 499 (501)
|.+|..++ +++|+
T Consensus 263 ~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 263 TKLPTFLKALPEMQ 276 (636)
T ss_dssp SSCCTTTTTCSSCC
T ss_pred ccChHHHhcCCCCC
Confidence 99999888 66654
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=3.7e-13 Score=128.53 Aligned_cols=109 Identities=29% Similarity=0.373 Sum_probs=87.3
Q ss_pred CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915 389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN 459 (501)
Q Consensus 389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N 459 (501)
|.|++|.|.... .++|+.|+|++|+|++..|..|.++++|+.|+|++|+++..++. +..+++|+.|+|++|
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 479999997543 24678899999999988888888999999999999998776664 688888888888888
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
++++..+..|..+++|+.|+|++|+|+ .+|..+. +++|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 137 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL 137 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence 888666666788888888888888888 7887665 4444
No 7
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.41 E-value=5.3e-13 Score=123.91 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=91.4
Q ss_pred CCcceeeecCCCC--------eeEEEecCCCCcccccCcc-cccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccC
Q 042915 389 NSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPE-SIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLEN 458 (501)
Q Consensus 389 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~ 458 (501)
|.|+.+.|....+ .+++.|+|++|+|++..+. .+..+++|++|+|++|++++..| .+.++++|+.|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5688888865432 2678899999999876664 48899999999999999998877 488999999999999
Q ss_pred CcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCCc
Q 042915 459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 459 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
|++++..|..|..+++|+.|+|++|+|++.+|..+. +++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 999988888899999999999999999977787776 55553
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.38 E-value=4.8e-13 Score=149.94 Aligned_cols=129 Identities=23% Similarity=0.355 Sum_probs=76.0
Q ss_pred cCcchhHHHHHHHHHhcCCCC--CCCC-CCCCCCCCCCcceeeecCCCCeeEEEecCCCCccccc---CcccccCCCCCC
Q 042915 356 TTFPRDVVAMEELAKHFKNPP--IDWN-GDPCLPWENSWTGVTCNKSKHTRVVSIDLKGFEISGT---LPESIGNLTALK 429 (501)
Q Consensus 356 ~t~~~d~~al~~~~~~~~~~~--~~W~-~d~C~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~---~p~~~~~L~~L~ 429 (501)
...++|.+||+++|+.+.++. .+|+ +..| |.|.||.|+ ..+|+.|+|+++.+.|. +|+.+.+|+.|+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~---~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCR---DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEE---TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred cCCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEEC---CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 345789999999999886432 3796 3344 489999998 26999999999999987 665444444444
Q ss_pred eeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCcc--ccCCCCCCCEEEccCCcCcccCCc
Q 042915 430 HLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQ--TLSQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 430 ~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~--~~~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
.++++.|.+...++.++.+++|++|+|++|.+.|.+|. .++.+++|++|+|++|.+.+.+|.
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 144 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence 44444444332222344444444444444444444444 444444444444444444444443
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.37 E-value=7.4e-14 Score=140.82 Aligned_cols=136 Identities=20% Similarity=0.356 Sum_probs=95.4
Q ss_pred cCcchhHHHHHHHHHhcCCCCC----CCC-CCCCCCCCCCcceeeecC-------CCCeeEEEecCCCCcccccCccccc
Q 042915 356 TTFPRDVVAMEELAKHFKNPPI----DWN-GDPCLPWENSWTGVTCNK-------SKHTRVVSIDLKGFEISGTLPESIG 423 (501)
Q Consensus 356 ~t~~~d~~al~~~~~~~~~~~~----~W~-~d~C~~~~~~w~gv~c~~-------~~l~~l~~L~Ls~n~l~g~~p~~~~ 423 (501)
.....|..||+++|..+..... .|. ...|.+..|.|.|+.|.. ....+++.|+|++|+++ .+|..+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 4457889999999987743333 452 112223346899999852 23456778888888877 6677777
Q ss_pred CCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccC
Q 042915 424 NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493 (501)
Q Consensus 424 ~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~ 493 (501)
++++|++|+|++|.++..+..++.+++|+.|+|++|+++ .+|..++.+++|++|+|++|++.+.+|..+
T Consensus 102 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 788888888888887733335777778888888888777 677777777777777777777777777655
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=2.4e-12 Score=117.49 Aligned_cols=109 Identities=25% Similarity=0.363 Sum_probs=92.9
Q ss_pred CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915 389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN 459 (501)
Q Consensus 389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N 459 (501)
|.|.++.|...+ .++|+.|+|++|++++..+..+..+++|++|+|++|++++.++. +..+++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 679999987543 34789999999999977777789999999999999999988775 699999999999999
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCcccCCccC-C-CCCC
Q 042915 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL-W-KPGL 498 (501)
Q Consensus 460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~-~-~~~L 498 (501)
++++..+..+..+++|+.|+|++|+|+ .+|... . +++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L 126 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSL 126 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTC
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCccc
Confidence 999777777899999999999999999 677664 3 4544
No 11
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=2.9e-12 Score=119.12 Aligned_cols=108 Identities=25% Similarity=0.370 Sum_probs=92.8
Q ss_pred CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915 389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN 459 (501)
Q Consensus 389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N 459 (501)
|.|..+.|.... ..+++.|+|++|+|+ .+|..|.++++|+.|+|++|++++..+. |.++++|+.|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 567778886433 236899999999998 7788999999999999999999988874 899999999999999
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCcccCCcc-CC-CCCC
Q 042915 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPDG-LW-KPGL 498 (501)
Q Consensus 460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~-~~-~~~L 498 (501)
++++..|..|..+++|+.|+|++|+|+ .+|.. +. +++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 128 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSAL 128 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccc
Confidence 999888889999999999999999999 67765 44 5544
No 12
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=2.2e-12 Score=117.43 Aligned_cols=100 Identities=29% Similarity=0.305 Sum_probs=88.4
Q ss_pred CCcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915 389 NSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN 459 (501)
Q Consensus 389 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N 459 (501)
|.|+.+.|....+ .+++.|+|++|+|++..|..|.++++|++|+|++|+|++.++. |..+++|+.|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5688888865432 4688999999999998899999999999999999999988886 699999999999999
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCccc
Q 042915 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQ 488 (501)
Q Consensus 460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~ 488 (501)
+|++..+..|..+++|+.|+|++|++.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99977777899999999999999999843
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.33 E-value=1.1e-12 Score=147.10 Aligned_cols=95 Identities=39% Similarity=0.615 Sum_probs=90.6
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
...+.+|+.|+|++|+++|.+|..+++|++|+.|+|++|+++|.+| .++++++|+.|||++|+++|.+|..++.+++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 4457789999999999999999999999999999999999999999 589999999999999999999999999999999
Q ss_pred EEEccCCcCcccCCcc
Q 042915 477 EIFLQNNNLDGQIPDG 492 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~~ 492 (501)
+|+|++|+|+|.||..
T Consensus 708 ~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EEECCSSEEEEECCSS
T ss_pred EEECcCCcccccCCCc
Confidence 9999999999999975
No 14
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=3.7e-12 Score=120.86 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=46.0
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
++|+.|+|++|+|++..+..|.++++|+.|+|++|++++.++. +..+++|+.|+|++|++++..|..|..+++|+.|+|
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 3445555555555544444455555555555555555544443 445555555555555555444445555555555555
Q ss_pred cCCcCcccCCccCC
Q 042915 481 QNNNLDGQIPDGLW 494 (501)
Q Consensus 481 s~N~l~g~lP~~~~ 494 (501)
++|+|++..|..+.
T Consensus 137 ~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 137 YDNQITTVAPGAFD 150 (220)
T ss_dssp TTSCCCCBCTTTTT
T ss_pred CCCcCCEECHHHhc
Confidence 55555533343433
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=4.4e-12 Score=120.33 Aligned_cols=86 Identities=27% Similarity=0.319 Sum_probs=54.8
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
+++|+.|+|++|+|++..|..|.++++|++|+|++|+|+..++. |.++++|+.|+|++|++++..|..|..+++|+.|+
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 44556666666666655566666666666666666666655443 46666666666666666666666666666677777
Q ss_pred ccCCcCc
Q 042915 480 LQNNNLD 486 (501)
Q Consensus 480 Ls~N~l~ 486 (501)
|++|+|+
T Consensus 135 L~~N~l~ 141 (220)
T 2v9t_B 135 LYDNKLQ 141 (220)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 7777766
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=7.7e-12 Score=118.65 Aligned_cols=89 Identities=22% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
...+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..|. +..+++|+.|+|++|++++..+..+..+++|+
T Consensus 76 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 76 FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 34556677777777777755555566677777777777777766553 66677777777777777765555666777777
Q ss_pred EEEccCCcCc
Q 042915 477 EIFLQNNNLD 486 (501)
Q Consensus 477 ~L~Ls~N~l~ 486 (501)
.|+|++|++.
T Consensus 156 ~L~L~~N~~~ 165 (220)
T 2v9t_B 156 TMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCEE
T ss_pred EEEeCCCCcC
Confidence 7777777664
No 17
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=6.7e-12 Score=117.48 Aligned_cols=102 Identities=30% Similarity=0.415 Sum_probs=64.9
Q ss_pred CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCC
Q 042915 389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENN 459 (501)
Q Consensus 389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N 459 (501)
|.|.++.|.... ..+++.|+|++|++++..+..+.++++|++|+|++|++++.++. +..+++|++|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 567777775432 23567777777777755555566777777777777777655553 466666777777666
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
++++..+..+..+++|++|+|++|+|+ .+|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 117 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPD 117 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-ccCH
Confidence 666544445566666666666666666 3443
No 18
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=3e-12 Score=118.83 Aligned_cols=92 Identities=24% Similarity=0.384 Sum_probs=85.8
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++.++. +.++++|+.|+|++|++++..|..+..+++|+.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 3567899999999999999999999999999999999999999886 899999999999999999999999999999999
Q ss_pred EEccCCcCcccCC
Q 042915 478 IFLQNNNLDGQIP 490 (501)
Q Consensus 478 L~Ls~N~l~g~lP 490 (501)
|+|++|++.+..+
T Consensus 131 L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 131 LNLASNPFNCNCH 143 (192)
T ss_dssp EECTTCCBCCSGG
T ss_pred EEeCCCCccCcCc
Confidence 9999999986654
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=9.5e-12 Score=118.02 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=95.1
Q ss_pred CCcceeeecCCCC--------eeEEEecCCCCcccccCc-ccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccC
Q 042915 389 NSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLP-ESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLEN 458 (501)
Q Consensus 389 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p-~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~ 458 (501)
|.|..+.|....+ ..++.|+|++|+|++..+ ..|..+++|+.|+|++|++++..+ .|.++++|+.|+|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5788888875433 246799999999998755 458999999999999999999888 589999999999999
Q ss_pred CcCCccCccccCCCCCCCEEEccCCcCcccCCccCC-CCCCc
Q 042915 459 NQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 459 N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
|++++..|..|..+++|+.|+|++|+|++..|..+. +++|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 999988888899999999999999999976677776 55553
No 20
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=1.1e-11 Score=113.37 Aligned_cols=101 Identities=26% Similarity=0.295 Sum_probs=86.0
Q ss_pred CcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCc
Q 042915 390 SWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQ 460 (501)
Q Consensus 390 ~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~ 460 (501)
....+.|.... ..+|+.|+|++|+|++..|..|.++++|+.|+|++|+|++.++. |..+++|+.|+|++|+
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 44556665432 24688999999999998899999999999999999999988776 6899999999999999
Q ss_pred CCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 461 l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
|++..+..|..+++|+.|+|++|++. ..|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 99666666999999999999999998 4554
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.24 E-value=2e-12 Score=129.23 Aligned_cols=96 Identities=28% Similarity=0.469 Sum_probs=78.8
Q ss_pred CCCeeEEEecCCC-CcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 399 SKHTRVVSIDLKG-FEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 399 ~~l~~l~~L~Ls~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
..+++|+.|+|++ |.+.+.+|..+.++++|++|+|++|++++.+| .+.++++|++|+|++|.+++.+|..++.+++|+
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 3456788888884 88888888888888888888888888887777 478888888888888888888888888888888
Q ss_pred EEEccCCcCcccCCccCC
Q 042915 477 EIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~~~~ 494 (501)
+|+|++|+++|.+|..++
T Consensus 153 ~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYG 170 (313)
T ss_dssp EEECCSSCCEEECCGGGG
T ss_pred eEECcCCcccCcCCHHHh
Confidence 888888888888887776
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.23 E-value=9.9e-12 Score=125.15 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=90.9
Q ss_pred cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCC
Q 042915 397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPIL 475 (501)
Q Consensus 397 ~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L 475 (501)
....+++|+.|+|++|++++ +|+.+..+++|+.|+|++|++.+.+|. ++.+++|+.|+|++|++.+.+|..++.+++|
T Consensus 201 ~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 34456789999999999995 666799999999999999999998884 8999999999999999999999999999999
Q ss_pred CEEEccCCcCcccCCccCC-CCCCc
Q 042915 476 REIFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 476 ~~L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
+.|+|++|++.|.+|+.++ +++++
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred CEEeCCCCCchhhccHHHhhccCce
Confidence 9999999999999999988 66654
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.20 E-value=5.9e-11 Score=114.47 Aligned_cols=87 Identities=30% Similarity=0.352 Sum_probs=44.7
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
.+++|+.|+|++|+|++..+..|..+++|+.|+|++|++++.++ .+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 34455555555555554444444555555555555555554444 24555555555555555554444445555555555
Q ss_pred EccCCcCc
Q 042915 479 FLQNNNLD 486 (501)
Q Consensus 479 ~Ls~N~l~ 486 (501)
+|++|++.
T Consensus 185 ~l~~N~~~ 192 (251)
T 3m19_A 185 TLFGNQFD 192 (251)
T ss_dssp ECCSCCBC
T ss_pred EeeCCcee
Confidence 55555554
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=4.8e-11 Score=113.80 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=43.4
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
++|+.|+|++|+|.+..+..|..+++|+.|+|++|+|++.++. +..+++|+.|+|++|+++ .+|..+..+++|+.|+|
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 142 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEEC
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEEC
Confidence 4455555555555433334445555555555555555544443 345555555555555555 44555555555555555
Q ss_pred cCCcCc
Q 042915 481 QNNNLD 486 (501)
Q Consensus 481 s~N~l~ 486 (501)
++|+|+
T Consensus 143 ~~N~l~ 148 (229)
T 3e6j_A 143 DQNQLK 148 (229)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 555555
No 25
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.19 E-value=6.2e-11 Score=117.25 Aligned_cols=104 Identities=25% Similarity=0.308 Sum_probs=86.7
Q ss_pred eeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCC
Q 042915 394 VTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQL 472 (501)
Q Consensus 394 v~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l 472 (501)
++.....+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++.++. +..+++|+.|+|++|++++..+..+..+
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 333345567889999999999987778899999999999999999987775 6889999999999999996555667889
Q ss_pred CCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 473 PILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 473 ~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
++|+.|+|++|+|+ .+|..++ ...|
T Consensus 172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L 197 (290)
T 1p9a_G 172 ENLDTLLLQENSLY-TIPKGFFGSHLL 197 (290)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred CCCCEEECCCCcCC-ccChhhcccccC
Confidence 99999999999999 7998877 4443
No 26
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.19 E-value=6.9e-11 Score=113.99 Aligned_cols=100 Identities=25% Similarity=0.327 Sum_probs=86.5
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
...+++|+.|+|++|++++..+..|..+++|++|+|++|++++.++. +..+++|+.|+|++|++++..+..++.+++|+
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 35678999999999999988888899999999999999999988775 68999999999999999977777899999999
Q ss_pred EEEccCCcCcccCCc-cCC-CCCC
Q 042915 477 EIFLQNNNLDGQIPD-GLW-KPGL 498 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~-~~~-~~~L 498 (501)
.|+|++|+|++ +|. .+. +++|
T Consensus 159 ~L~L~~N~l~~-~~~~~~~~l~~L 181 (251)
T 3m19_A 159 TLSLSTNQLQS-VPHGAFDRLGKL 181 (251)
T ss_dssp EEECCSSCCSC-CCTTTTTTCTTC
T ss_pred EEECCCCcCCc-cCHHHHhCCCCC
Confidence 99999999994 554 454 5554
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.18 E-value=7.8e-11 Score=115.13 Aligned_cols=91 Identities=26% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
.+++|+.|+|++|++++..+..+..+++|+.|++++|++++.++. +..+++|+.|+|++|++++..|..++.+++|+.|
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 345555666666665554444455566666666666666555443 4555666666666666655555555555666666
Q ss_pred EccCCcCcccCC
Q 042915 479 FLQNNNLDGQIP 490 (501)
Q Consensus 479 ~Ls~N~l~g~lP 490 (501)
+|++|++.+..|
T Consensus 211 ~l~~N~~~~~~~ 222 (272)
T 3rfs_A 211 WLHDNPWDCTCP 222 (272)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCCccccCc
Confidence 666666555444
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.18 E-value=2.1e-11 Score=127.49 Aligned_cols=109 Identities=27% Similarity=0.279 Sum_probs=70.8
Q ss_pred CCCCCCCCCcce--eeecCCCC-------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCC
Q 042915 382 DPCLPWENSWTG--VTCNKSKH-------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTA 450 (501)
Q Consensus 382 d~C~~~~~~w~g--v~c~~~~l-------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~ 450 (501)
+||. ..|.|.+ +.|...++ ++|+.|+|++|.+++..|..|.++++|++|+|++|.+.+.++ .+.++++
T Consensus 2 ~p~~-~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~ 80 (455)
T 3v47_A 2 DPGT-SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80 (455)
T ss_dssp ------CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred CCcc-ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccccc
Confidence 4452 3344444 66654332 357778888888877777777777777777777777765543 3677777
Q ss_pred CCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915 451 LETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 451 L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
|++|+|++|++.+..|..++++++|++|+|++|++++.+|.
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC
Confidence 77777777777766677777777777777777777654444
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=8.8e-11 Score=109.76 Aligned_cols=92 Identities=27% Similarity=0.331 Sum_probs=66.4
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
..+++|+.|+|++|++++..+..+.++++|++|+|++|++++.++. +..+++|+.|+|++|++++..+..+..+++|+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 4556777777777777766556667777777777777777766664 577777777777777777555555777777777
Q ss_pred EEccCCcCcccCC
Q 042915 478 IFLQNNNLDGQIP 490 (501)
Q Consensus 478 L~Ls~N~l~g~lP 490 (501)
|+|++|++.+..|
T Consensus 153 L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 153 IWLHDNPWDCTCP 165 (208)
T ss_dssp EECCSCCBCCCTT
T ss_pred EEecCCCeecCCC
Confidence 7777777776555
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.18 E-value=3.8e-11 Score=130.10 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=77.1
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
.++.|+|++|+|++..+..|.+|++|++|+|++|+|+++.+. |.+|++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 678899999999877778888899999999999998887774 7888889999999988886666778888888888888
Q ss_pred CCcCcccCCc-cCC-CCCC
Q 042915 482 NNNLDGQIPD-GLW-KPGL 498 (501)
Q Consensus 482 ~N~l~g~lP~-~~~-~~~L 498 (501)
+|+|+ .+|. .|. +++|
T Consensus 133 ~N~l~-~l~~~~~~~L~~L 150 (635)
T 4g8a_A 133 ETNLA-SLENFPIGHLKTL 150 (635)
T ss_dssp TSCCC-CSTTCCCTTCTTC
T ss_pred CCcCC-CCChhhhhcCccc
Confidence 88888 4554 354 5544
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=2.4e-11 Score=107.41 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=84.6
Q ss_pred eeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCcc-CccccC
Q 042915 393 GVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGW-IPQTLS 470 (501)
Q Consensus 393 gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~-~P~~~~ 470 (501)
.++.....+++|+.|++++|.+++. ..+..+++|++|+|++|++++.+|. +..+++|+.|+|++|++++. .|..++
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 4444446678999999999999866 7789999999999999999987775 56799999999999999863 447899
Q ss_pred CCCCCCEEEccCCcCcccCCc----cCC-CCCCc
Q 042915 471 QLPILREIFLQNNNLDGQIPD----GLW-KPGLN 499 (501)
Q Consensus 471 ~l~~L~~L~Ls~N~l~g~lP~----~~~-~~~L~ 499 (501)
.+++|++|++++|+++ .+|. .+. +++|+
T Consensus 111 ~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 111 KLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLT 143 (149)
T ss_dssp GCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCC
T ss_pred hCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcc
Confidence 9999999999999999 4554 344 55543
No 32
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=5.9e-11 Score=110.25 Aligned_cols=89 Identities=27% Similarity=0.266 Sum_probs=81.1
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
...+.+|+.|+|++|.|++..+..|.+|++|+.|+|++|+|++..+. |..+++|+.|+|++|++++..+..|..+++|+
T Consensus 50 ~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 34567899999999999988888999999999999999999998884 89999999999999999966666799999999
Q ss_pred EEEccCCcCc
Q 042915 477 EIFLQNNNLD 486 (501)
Q Consensus 477 ~L~Ls~N~l~ 486 (501)
.|+|++|++.
T Consensus 130 ~L~L~~N~~~ 139 (193)
T 2wfh_A 130 HLAIGANPLY 139 (193)
T ss_dssp EEECCSSCEE
T ss_pred EEEeCCCCee
Confidence 9999999985
No 33
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=7.2e-11 Score=107.54 Aligned_cols=92 Identities=28% Similarity=0.336 Sum_probs=81.7
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
..+++|+.|+|++|+|++..+..+..+++|+.|+|++|++++.++. +..+++|+.|+|++|++++..+..+..+++|+.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 3567899999999999977777789999999999999999988875 689999999999999999666666789999999
Q ss_pred EEccCCcCcccCC
Q 042915 478 IFLQNNNLDGQIP 490 (501)
Q Consensus 478 L~Ls~N~l~g~lP 490 (501)
|+|++|++.+..|
T Consensus 129 L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 129 IWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCBCCCHH
T ss_pred EEecCCCeeccCc
Confidence 9999999987554
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=3.7e-11 Score=108.47 Aligned_cols=104 Identities=20% Similarity=0.313 Sum_probs=84.4
Q ss_pred eeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccC-ccccC
Q 042915 393 GVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWI-PQTLS 470 (501)
Q Consensus 393 gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~-P~~~~ 470 (501)
.++.....+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.+|. +..+++|+.|+|++|++++.. +..+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 3443345678999999999999865 7789999999999999999987775 467999999999999998532 27899
Q ss_pred CCCCCCEEEccCCcCcccCCc----cCC-CCCCc
Q 042915 471 QLPILREIFLQNNNLDGQIPD----GLW-KPGLN 499 (501)
Q Consensus 471 ~l~~L~~L~Ls~N~l~g~lP~----~~~-~~~L~ 499 (501)
.+++|+.|+|++|+++ .+|. .+. +++|+
T Consensus 118 ~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 118 KLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCC
T ss_pred cCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCc
Confidence 9999999999999999 5665 454 55543
No 35
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.3e-10 Score=105.60 Aligned_cols=93 Identities=28% Similarity=0.387 Sum_probs=79.3
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
..+.|++++|+|+ .+|..+. ++|+.|+|++|+|++..|. |.++++|+.|+|++|+|++..|..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4468999999998 5776653 8999999999999999885 8999999999999999997777778999999999999
Q ss_pred CCcCcccCCcc-CC-CCCCc
Q 042915 482 NNNLDGQIPDG-LW-KPGLN 499 (501)
Q Consensus 482 ~N~l~g~lP~~-~~-~~~L~ 499 (501)
+|+|+ .+|.. +. +++|+
T Consensus 87 ~N~l~-~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 87 DNQLK-SIPRGAFDNLKSLT 105 (170)
T ss_dssp SSCCC-CCCTTTTTTCTTCC
T ss_pred CCccC-EeCHHHhcCCCCCC
Confidence 99999 57664 54 55553
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=1.3e-10 Score=113.35 Aligned_cols=108 Identities=29% Similarity=0.369 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCC
Q 042915 378 DWNGDPCLPWENSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTL 448 (501)
Q Consensus 378 ~W~~d~C~~~~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l 448 (501)
.|.+..|.. ...+..+.|....+ .+++.|+|++|++++..+..|.++++|++|+|++|+++...+. +..+
T Consensus 6 ~~~~~~C~c-~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 6 KKDGGVCSC-NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp GGGTCSBEE-ETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCCCCEe-CCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 466666632 12455666653322 2466677777777655555666666666666666666655443 3556
Q ss_pred CCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCc
Q 042915 449 TALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 449 ~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 486 (501)
++|+.|+|++|++.+..+..+..+++|++|+|++|+++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK 122 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC
Confidence 66666666666665444444555555555555555555
No 37
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=1.5e-10 Score=113.16 Aligned_cols=110 Identities=21% Similarity=0.192 Sum_probs=91.5
Q ss_pred Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915 390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
...++... ...+++|+.|+|++|++++..+..+.++++|++|+|++|++++.++. +..+++|+.|+|++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 34444443 35678999999999999988888899999999999999999988875 68999999999999999987777
Q ss_pred ccCCCCCCCEEEccCCcCcccCCccCC-CCCCc
Q 042915 468 TLSQLPILREIFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
.++.+++|+.|+|++|++++..|..+. +++|+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 889999999999999999964444454 55543
No 38
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.1e-10 Score=117.92 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=77.4
Q ss_pred CCcceeeecCC----------CCeeEEEecCCC-CcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEc
Q 042915 389 NSWTGVTCNKS----------KHTRVVSIDLKG-FEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHL 456 (501)
Q Consensus 389 ~~w~gv~c~~~----------~l~~l~~L~Ls~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~L 456 (501)
|.|..+.|... .+.+|+.|+|++ |+|++..+..|.+|++|+.|+|++|+|++.+|. |.+|++|+.|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 46777777643 345688899986 888888778888999999999999999888884 688999999999
Q ss_pred cCCcCCccCccccCCCCCCCEEEccCCcCc
Q 042915 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 457 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 486 (501)
++|+|++..+..+..++ |+.|+|.+|+|.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999865555565555 899999998886
No 39
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1e-10 Score=119.17 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=49.2
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
+.+|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+. |..+++|+.|+|++|++.+..|..|..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 34445555555555544444455555555555555555544442 45555555555555555555555555556666666
Q ss_pred ccCCcCcccCCcc
Q 042915 480 LQNNNLDGQIPDG 492 (501)
Q Consensus 480 Ls~N~l~g~lP~~ 492 (501)
|++|+|+ .+|..
T Consensus 143 L~~N~l~-~l~~~ 154 (361)
T 2xot_A 143 LSQNQIS-RFPVE 154 (361)
T ss_dssp CCSSCCC-SCCGG
T ss_pred CCCCcCC-eeCHH
Confidence 6666665 45544
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.12 E-value=2.4e-10 Score=112.98 Aligned_cols=99 Identities=28% Similarity=0.375 Sum_probs=87.6
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
..+++|+.|+|++|+|+ .+|..+..+++|++|+|++|++++.++. |.++++|+.|+|++|++++..+..|..+++|+.
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 45778999999999998 7888899999999999999999988874 899999999999999999777777899999999
Q ss_pred EEccCCcCcccCCccCC--CCCCc
Q 042915 478 IFLQNNNLDGQIPDGLW--KPGLN 499 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~~~--~~~L~ 499 (501)
|+|++|+|+ .+|.+++ +++|+
T Consensus 153 L~L~~N~l~-~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 153 LSLANNNLT-ELPAGLLNGLENLD 175 (290)
T ss_dssp EECTTSCCS-CCCTTTTTTCTTCC
T ss_pred EECCCCcCC-ccCHHHhcCcCCCC
Confidence 999999999 7887654 55543
No 41
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.12 E-value=3.3e-11 Score=106.53 Aligned_cols=96 Identities=20% Similarity=0.247 Sum_probs=81.7
Q ss_pred CeeEEEecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
.++++.|++++|.++ +.+|..+..+++|+.|++++|++++. +.+..+++|+.|+|++|++++.+|..++.+++|+.|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 467889999999998 78888889999999999999999877 7788899999999999999977888888899999999
Q ss_pred ccCCcCcccCC--ccCC-CCCC
Q 042915 480 LQNNNLDGQIP--DGLW-KPGL 498 (501)
Q Consensus 480 Ls~N~l~g~lP--~~~~-~~~L 498 (501)
+++|++++ +| ..+. +++|
T Consensus 95 ls~N~i~~-~~~~~~~~~l~~L 115 (149)
T 2je0_A 95 LSGNKIKD-LSTIEPLKKLENL 115 (149)
T ss_dssp CTTSCCCS-HHHHGGGGGCTTC
T ss_pred CCCCcCCC-hHHHHHHhhCCCC
Confidence 99999984 43 5555 5544
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1.4e-10 Score=118.29 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=84.0
Q ss_pred Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCcc
Q 042915 390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
...++.. ....+++|+.|+|++|+|++..+..|.++++|+.|+|++|++++..+ .|.++++|+.|+|++|+|++..+.
T Consensus 75 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 75 HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 4555553 35677899999999999998888889999999999999999998877 589999999999999999954444
Q ss_pred cc---CCCCCCCEEEccCCcCcccCCc
Q 042915 468 TL---SQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 468 ~~---~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
.+ ..+++|+.|+|++|+|+ .+|.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~-~l~~ 180 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLK-KLPL 180 (361)
T ss_dssp GTC----CTTCCEEECCSSCCC-CCCH
T ss_pred HhcCcccCCcCCEEECCCCCCC-ccCH
Confidence 44 67899999999999999 6774
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.11 E-value=1.2e-10 Score=126.23 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=71.0
Q ss_pred Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCc-cCc
Q 042915 390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEG-WIP 466 (501)
Q Consensus 390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g-~~P 466 (501)
...++.-. ..++++|+.|+|++|+|++..+..|.+|++|++|+|++|++++.++. |+++++|+.|+|++|.+++ .+|
T Consensus 87 ~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 166 (635)
T 4g8a_A 87 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 166 (635)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc
Confidence 44455432 45567777777777777766666677777777777777777766653 6777777777777777764 356
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccC
Q 042915 467 QTLSQLPILREIFLQNNNLDGQIPDGL 493 (501)
Q Consensus 467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~ 493 (501)
..++.+++|++|+|++|+|++..|..+
T Consensus 167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred hhhccchhhhhhcccCccccccccccc
Confidence 667777777777777777775444444
No 44
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=2.3e-10 Score=104.41 Aligned_cols=91 Identities=22% Similarity=0.366 Sum_probs=78.2
Q ss_pred EEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCC
Q 042915 405 VSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNN 483 (501)
Q Consensus 405 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N 483 (501)
+.+++++|+|. .+|..+. ++|+.|+|++|+|++.+| .+.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57999999997 6777664 899999999999999988 4899999999999999999766666899999999999999
Q ss_pred cCcccCCcc-CC-CCCCc
Q 042915 484 NLDGQIPDG-LW-KPGLN 499 (501)
Q Consensus 484 ~l~g~lP~~-~~-~~~L~ 499 (501)
+|+ .+|.. +. +++|+
T Consensus 92 ~l~-~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLT 108 (174)
T ss_dssp CCC-CCCTTTTTTCTTCS
T ss_pred ccc-eeCHHHhccccCCC
Confidence 999 67765 54 55553
No 45
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1e-10 Score=126.62 Aligned_cols=100 Identities=25% Similarity=0.234 Sum_probs=88.0
Q ss_pred CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccC-ccc
Q 042915 390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWI-PQT 468 (501)
Q Consensus 390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~-P~~ 468 (501)
...+++. ...+++|+.|+|++|+|+ .+|..+++|++|+.|+|++|+|++ +|.++.+++|+.|+|++|+|++.. |..
T Consensus 452 ~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 452 DLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQP 528 (567)
T ss_dssp CCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred CCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHH
Confidence 4455543 556789999999999999 889999999999999999999998 568999999999999999999876 999
Q ss_pred cCCCCCCCEEEccCCcCcccCCccC
Q 042915 469 LSQLPILREIFLQNNNLDGQIPDGL 493 (501)
Q Consensus 469 ~~~l~~L~~L~Ls~N~l~g~lP~~~ 493 (501)
++.+++|+.|+|++|+|++ +|+.+
T Consensus 529 l~~l~~L~~L~L~~N~l~~-~~~~~ 552 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQ-EEGIQ 552 (567)
T ss_dssp GGGCTTCCEEECTTSGGGG-SSSCT
T ss_pred HhcCCCCCEEEecCCcCCC-CccHH
Confidence 9999999999999999995 55443
No 46
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=2.9e-10 Score=110.93 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=87.2
Q ss_pred Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCc-cCc
Q 042915 390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEG-WIP 466 (501)
Q Consensus 390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g-~~P 466 (501)
...++.. ....+++|+.|+|++|.+++..+..+.++++|++|++++|++.+..+ .+..+++|+.|+|++|++.+ .+|
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCc
Confidence 3444443 24567889999999999998888889999999999999999998877 58999999999999999986 368
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 467 QTLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
..++.+++|+.|+|++|++++..+..+.
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 170 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence 9999999999999999999954444443
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.08 E-value=3e-10 Score=123.14 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=86.8
Q ss_pred Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCc-cCc
Q 042915 390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEG-WIP 466 (501)
Q Consensus 390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g-~~P 466 (501)
...++.. ...++++|+.|+|++|.+++..|..|+++++|++|+|++|++++..+ .++++++|+.|+|++|.+.+ .+|
T Consensus 67 ~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp 146 (606)
T 3vq2_A 67 EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech
Confidence 4455543 34667889999999999998888889999999999999999988775 58899999999999999886 678
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 467 QTLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
..++++++|++|+|++|++++..|..+.
T Consensus 147 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 174 (606)
T 3vq2_A 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQ 174 (606)
T ss_dssp GGGGTCTTCCEEECCSSCCCEECTTTTH
T ss_pred HhHhhcCCCCEEEccCCcceecChhhhh
Confidence 8999999999999999999865565554
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=3.5e-10 Score=119.15 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=48.9
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
+++.|+|++|++++..+..|.++++|++|+|++|++++..| .|.++++|+.|+|++|++++..+..|.++++|+.|+|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 45556666666655555555555555555555555555544 35555555555555555553333345555555555555
Q ss_pred CCcCcccCCccC
Q 042915 482 NNNLDGQIPDGL 493 (501)
Q Consensus 482 ~N~l~g~lP~~~ 493 (501)
+|++.+..|..+
T Consensus 113 ~n~i~~~~~~~~ 124 (477)
T 2id5_A 113 ENKIVILLDYMF 124 (477)
T ss_dssp TSCCCEECTTTT
T ss_pred CCccccCChhHc
Confidence 555554333333
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.07 E-value=1.9e-10 Score=123.11 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=70.2
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
++|+.|+|++|++++..|..|.++++|++|+|++|++++.+| .+.++++|++|+|++|++++..|..++.+++|++|+|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 367778888888777777777778888888888888777766 4677777888888888777666666777777788888
Q ss_pred cCCcCcc-cCCccCC-CCCC
Q 042915 481 QNNNLDG-QIPDGLW-KPGL 498 (501)
Q Consensus 481 s~N~l~g-~lP~~~~-~~~L 498 (501)
++|++++ .+|..+. +++|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTC
T ss_pred CCCcccccchhhhhhccCCc
Confidence 7777764 2455554 4443
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.06 E-value=3.5e-10 Score=110.87 Aligned_cols=100 Identities=23% Similarity=0.316 Sum_probs=84.2
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
...+++|+.|+|++|++++..+..+..+++|+.|+|++|++++.++. +..+++|+.|+|++|++.+..|..+..+++|+
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence 34577899999999999877777789999999999999999887774 78899999999999999988899999999999
Q ss_pred EEEccCCcCcccCCc-cCC-CCCC
Q 042915 477 EIFLQNNNLDGQIPD-GLW-KPGL 498 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~-~~~-~~~L 498 (501)
.|+|++|++++ +|. .+. ++.|
T Consensus 205 ~L~l~~n~l~~-~~~~~~~~l~~L 227 (285)
T 1ozn_A 205 TLYLFANNLSA-LPTEALAPLRAL 227 (285)
T ss_dssp EEECCSSCCSC-CCHHHHTTCTTC
T ss_pred EeeCCCCcCCc-CCHHHcccCccc
Confidence 99999999994 654 354 4444
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.06 E-value=1.1e-10 Score=105.42 Aligned_cols=95 Identities=26% Similarity=0.286 Sum_probs=83.7
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCC--cCCCCCCCCCEEEccCCcCCccCc---cccCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQI--PEMKTLTALETLHLENNQFEGWIP---QTLSQL 472 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~--p~~~~l~~L~~L~Ls~N~l~g~~P---~~~~~l 472 (501)
...+++|+.|+|++|++++.+|..+..+++|+.|+|++|++++.. +.+..+++|+.|+|++|.+++..+ ..+..+
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 345678999999999999888888888999999999999999865 468999999999999999996554 489999
Q ss_pred CCCCEEEccCCcCcccCCccC
Q 042915 473 PILREIFLQNNNLDGQIPDGL 493 (501)
Q Consensus 473 ~~L~~L~Ls~N~l~g~lP~~~ 493 (501)
++|+.|++++|.+. ++|.+.
T Consensus 147 ~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 147 PQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp SSCCEETTEETTSC-BCCSSS
T ss_pred ccCcEecCCCCChh-hccccc
Confidence 99999999999998 788753
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.06 E-value=4.8e-10 Score=117.52 Aligned_cols=102 Identities=25% Similarity=0.356 Sum_probs=86.7
Q ss_pred CcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCc
Q 042915 390 SWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ 460 (501)
Q Consensus 390 ~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~ 460 (501)
.|..+.|...++ .+++.|+|++|+|++..+..|.++++|+.|+|++|++++..+ .|.++++|+.|+|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 356788865432 368899999999998889999999999999999999998877 48999999999999999
Q ss_pred CCccCccccCCCCCCCEEEccCCcCcccCCcc
Q 042915 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPDG 492 (501)
Q Consensus 461 l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~ 492 (501)
+++..+..|..+++|++|+|++|+|+ .+|..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~ 165 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIE-SIPSY 165 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCC-EECTT
T ss_pred CCccChhhhcccCCCCEEECCCCCcc-eeCHh
Confidence 99776777999999999999999998 56653
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.05 E-value=4.9e-10 Score=109.82 Aligned_cols=99 Identities=24% Similarity=0.332 Sum_probs=71.0
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCc-CCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNK-LWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
..+++|+.|+|++|.+++..|..+.++++|++|+|++|+ +....+ .+..+++|+.|+|++|++.+..|..+..+++|+
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 445677777777777777667777777778888888776 665545 467778888888888888776677777788888
Q ss_pred EEEccCCcCcccCCcc-CC-CCCC
Q 042915 477 EIFLQNNNLDGQIPDG-LW-KPGL 498 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~~-~~-~~~L 498 (501)
+|+|++|+++ .+|.. +. +++|
T Consensus 133 ~L~l~~n~l~-~~~~~~~~~l~~L 155 (285)
T 1ozn_A 133 YLYLQDNALQ-ALPDDTFRDLGNL 155 (285)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTC
T ss_pred EEECCCCccc-ccCHhHhccCCCc
Confidence 8888888887 45543 43 4444
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.05 E-value=6.5e-10 Score=108.30 Aligned_cols=99 Identities=27% Similarity=0.373 Sum_probs=86.6
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++.++. +..+++|+.|+|++|++++..+..|..+++|+.
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 4678999999999999988888899999999999999999987775 799999999999999999777778999999999
Q ss_pred EEccCCcCcccCCcc-CC-CCCC
Q 042915 478 IFLQNNNLDGQIPDG-LW-KPGL 498 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~-~~-~~~L 498 (501)
|+|++|+|+ .+|.. +. ++.|
T Consensus 186 L~L~~N~l~-~~~~~~~~~l~~L 207 (270)
T 2o6q_A 186 LKLDNNQLK-RVPEGAFDSLEKL 207 (270)
T ss_dssp EECCSSCCS-CCCTTTTTTCTTC
T ss_pred EECCCCcCC-cCCHHHhccccCC
Confidence 999999999 57765 43 4544
No 55
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=7e-11 Score=131.60 Aligned_cols=93 Identities=25% Similarity=0.271 Sum_probs=73.6
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
..+++|+.|+|++|.|+ .+|..|++|++|+.|+|++|+|+.++..++.|++|+.|+|++|.|+ .+|..|+.|++|+.|
T Consensus 244 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 244 FKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp GGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred cCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 35667888888888888 7788888888888888888888844446788888888888888886 778788888888888
Q ss_pred EccCCcCcccCCccC
Q 042915 479 FLQNNNLDGQIPDGL 493 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~~ 493 (501)
+|++|+|+|.+|..+
T Consensus 322 ~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 322 GVEGNPLEKQFLKIL 336 (727)
T ss_dssp ECTTSCCCSHHHHHH
T ss_pred eCCCCccCCCChHHH
Confidence 888888887666554
No 56
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=1.2e-10 Score=106.07 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=71.7
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCC-CCCCCCCEEEccCCcCCccCcc--ccCCCCCCCEEE
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEM-KTLTALETLHLENNQFEGWIPQ--TLSQLPILREIF 479 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~-~~l~~L~~L~Ls~N~l~g~~P~--~~~~l~~L~~L~ 479 (501)
+|+.|+|++|+|++. +.+..+++|+.|+|++|++++.++.+ ..+++|+.|+|++|++. .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 788899999998865 57888889999999999988776664 88889999999999886 5666 788888999999
Q ss_pred ccCCcCcccCCcc
Q 042915 480 LQNNNLDGQIPDG 492 (501)
Q Consensus 480 Ls~N~l~g~lP~~ 492 (501)
|++|+++ .+|..
T Consensus 120 l~~N~i~-~~~~~ 131 (176)
T 1a9n_A 120 ILRNPVT-NKKHY 131 (176)
T ss_dssp CCSSGGG-GSTTH
T ss_pred ecCCCCC-CcHhH
Confidence 9999988 67764
No 57
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.04 E-value=4.6e-10 Score=109.53 Aligned_cols=101 Identities=19% Similarity=0.234 Sum_probs=71.6
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
...+++|+.|+|++|++++..+..+.++++|++|+|++|++++..+ .+.++++|+.|+|++|++.+..+..++.+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 127 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence 3445677777777777776666677777777777777777777665 367777777777777777765555677778888
Q ss_pred EEEccCCcCcc-cCCccCC-CCCC
Q 042915 477 EIFLQNNNLDG-QIPDGLW-KPGL 498 (501)
Q Consensus 477 ~L~Ls~N~l~g-~lP~~~~-~~~L 498 (501)
+|+|++|.+++ .+|..+. +++|
T Consensus 128 ~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 128 ELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTC
T ss_pred EEECcCCccceecCchhhccCCCC
Confidence 88888888764 3566665 5544
No 58
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.03 E-value=4.6e-10 Score=117.19 Aligned_cols=91 Identities=23% Similarity=0.280 Sum_probs=51.2
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
.+++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..| .+..+++|+.|+|++|++++..+..+..+++|+.|
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 34555555555555555555555555556666666665555544 35555556666666665554444445555556666
Q ss_pred EccCCcCcccCC
Q 042915 479 FLQNNNLDGQIP 490 (501)
Q Consensus 479 ~Ls~N~l~g~lP 490 (501)
+|++|++++..|
T Consensus 401 ~l~~N~l~~~~~ 412 (455)
T 3v47_A 401 WLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCCcccCCC
Confidence 666666555554
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.02 E-value=5e-10 Score=121.39 Aligned_cols=100 Identities=23% Similarity=0.286 Sum_probs=65.6
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
.++++|+.|+|++|++++..|..|.++++|++|+|++|++++..| .++++++|++|+|++|++.+..|..++.+++|++
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 345566666666666666666666667777777777777666655 3666777777777777776555566777777777
Q ss_pred EEccCCcCcc-cCCccCC-CCCC
Q 042915 478 IFLQNNNLDG-QIPDGLW-KPGL 498 (501)
Q Consensus 478 L~Ls~N~l~g-~lP~~~~-~~~L 498 (501)
|+|++|.+++ .+|..+. +++|
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTC
T ss_pred EeCCCCcccceechHhHhhcCCC
Confidence 7777777764 4566665 5444
No 60
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.01 E-value=8.6e-11 Score=128.88 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=89.0
Q ss_pred CCcceeeecCCCCeeEEEecCCCCccccc-----------------Cccccc--CCCCCCeeecCCCcCCCCCc-CCCCC
Q 042915 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGT-----------------LPESIG--NLTALKHLRLGGNKLWGQIP-EMKTL 448 (501)
Q Consensus 389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~-----------------~p~~~~--~L~~L~~L~Ls~N~l~~~~p-~~~~l 448 (501)
+...+++-..+++++|+.|+|++|.++|. +|+.++ +|++|++|+|++|++.+.+| .++++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 35667776677788899999999999885 888888 99999999999999988888 47889
Q ss_pred CCCCEEEccCCc-CCc-cCccccCCC------CCCCEEEccCCcCcccCCc--cCC-CCCC
Q 042915 449 TALETLHLENNQ-FEG-WIPQTLSQL------PILREIFLQNNNLDGQIPD--GLW-KPGL 498 (501)
Q Consensus 449 ~~L~~L~Ls~N~-l~g-~~P~~~~~l------~~L~~L~Ls~N~l~g~lP~--~~~-~~~L 498 (501)
++|+.|+|++|+ ++| .+|..++.+ ++|++|+|++|+++ .+|. .+. +++|
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L 332 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKL 332 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCC
Confidence 999999999998 888 788877765 78888888888888 7887 665 5544
No 61
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.01 E-value=3.2e-10 Score=126.22 Aligned_cols=99 Identities=24% Similarity=0.308 Sum_probs=88.0
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
...+.+|+.|+|++|.+. .+|..+.+|++|++|+|++|+|+.+++.++.|++|+.|+|++|+|+ .+|..|+.|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 445778999999999998 7888888999999999999999954446999999999999999999 88999999999999
Q ss_pred EEccCCcCcccCCccCC-CCCCc
Q 042915 478 IFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
|+|++|.|+ .||.+|+ +++|+
T Consensus 298 L~L~~N~l~-~lp~~~~~l~~L~ 319 (727)
T 4b8c_D 298 FYFFDNMVT-TLPWEFGNLCNLQ 319 (727)
T ss_dssp EECCSSCCC-CCCSSTTSCTTCC
T ss_pred EECCCCCCC-ccChhhhcCCCcc
Confidence 999999998 8999887 66654
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.00 E-value=7.1e-10 Score=109.76 Aligned_cols=90 Identities=20% Similarity=0.284 Sum_probs=55.9
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCC-CC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLP-IL 475 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~-~L 475 (501)
...+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..+ .+..+++|+.|+|++|++.+..|..+..++ +|
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 3445566666666666666556666666666666666666665554 356666666666666666666666666653 66
Q ss_pred CEEEccCCcCcc
Q 042915 476 REIFLQNNNLDG 487 (501)
Q Consensus 476 ~~L~Ls~N~l~g 487 (501)
+.|+|++|++++
T Consensus 251 ~~L~L~~N~~~~ 262 (306)
T 2z66_A 251 AFLNLTQNDFAC 262 (306)
T ss_dssp CEEECTTCCEEC
T ss_pred CEEEccCCCeec
Confidence 666666666653
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.99 E-value=6.8e-10 Score=112.36 Aligned_cols=96 Identities=21% Similarity=0.176 Sum_probs=75.2
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+. +.++++|+.|+|++|++++..+..++.+++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 3678888888888876666788888888888888888887764 788888888888888888554555888888888888
Q ss_pred cCCcCcccCCc--cCC-CCCC
Q 042915 481 QNNNLDGQIPD--GLW-KPGL 498 (501)
Q Consensus 481 s~N~l~g~lP~--~~~-~~~L 498 (501)
++|+++ .+|. .+. +++|
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L 151 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKL 151 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTC
T ss_pred CCCCCc-ccCchhhhccCCCC
Confidence 888888 6776 343 4444
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.99 E-value=3.7e-10 Score=107.83 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=69.1
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCc-CCCCCc-CCCCCCCCCEEEccC-CcCCccCccccCCCCCCCEEE
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNK-LWGQIP-EMKTLTALETLHLEN-NQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~~~~p-~~~~l~~L~~L~Ls~-N~l~g~~P~~~~~l~~L~~L~ 479 (501)
+++.|+|++|++++..+..|.++++|+.|++++|+ ++...+ .+.++++|+.|+|++ |++++..+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 67788888888887777678888888888888886 776666 467888888888887 888866666777888888888
Q ss_pred ccCCcCcccCCc
Q 042915 480 LQNNNLDGQIPD 491 (501)
Q Consensus 480 Ls~N~l~g~lP~ 491 (501)
|++|+++ .+|.
T Consensus 112 l~~n~l~-~lp~ 122 (239)
T 2xwt_C 112 IFNTGLK-MFPD 122 (239)
T ss_dssp EEEECCC-SCCC
T ss_pred CCCCCCc-cccc
Confidence 8888887 4775
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.99 E-value=5.8e-10 Score=120.90 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=47.3
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
+++.|+|++|.+++..|..|.++++|++|+|++|++.+..| .|.++++|+.|+|++|++.+..|..|+.+++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 45555666666555555555555555555555555555544 25555555555555555555555555555555555555
Q ss_pred CCcCc
Q 042915 482 NNNLD 486 (501)
Q Consensus 482 ~N~l~ 486 (501)
+|.++
T Consensus 114 ~n~i~ 118 (606)
T 3t6q_A 114 QTGIS 118 (606)
T ss_dssp TSCCS
T ss_pred ccCcc
Confidence 55555
No 66
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.99 E-value=9.4e-10 Score=115.81 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=68.7
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
..++++|+.|+|++|++++..+..|.++++|++|+|++|++.+.++ .+..+++|+.|+|++|.+.+..|..|..+++|+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 4456677777777777776555567777778888888777777766 367777788888888877777777777777888
Q ss_pred EEEccCCcCcccCCc
Q 042915 477 EIFLQNNNLDGQIPD 491 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~ 491 (501)
.|+|++|+++ .+|.
T Consensus 156 ~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 156 QLTLEKCNLT-SIPT 169 (477)
T ss_dssp EEEEESCCCS-SCCH
T ss_pred EEECCCCcCc-ccCh
Confidence 8888888777 4554
No 67
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=9.9e-10 Score=110.79 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=77.8
Q ss_pred EecCCCC-cccccCcccccCCCCCCeeecCC-CcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915 406 SIDLKGF-EISGTLPESIGNLTALKHLRLGG-NKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482 (501)
Q Consensus 406 ~L~Ls~n-~l~g~~p~~~~~L~~L~~L~Ls~-N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 482 (501)
.++++++ +|+ .+|. +..+++|+.|+|++ |+|++.++ .|.+|++|+.|+|++|+|++..|..|++|++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 898 5788 99999999999996 99999887 489999999999999999999999999999999999999
Q ss_pred CcCcccCCccCC
Q 042915 483 NNLDGQIPDGLW 494 (501)
Q Consensus 483 N~l~g~lP~~~~ 494 (501)
|+|+ .+|..++
T Consensus 90 N~l~-~~~~~~~ 100 (347)
T 2ifg_A 90 NALE-SLSWKTV 100 (347)
T ss_dssp SCCS-CCCSTTT
T ss_pred Cccc-eeCHHHc
Confidence 9999 6777654
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=4.6e-10 Score=104.12 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=53.6
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+ .+..+++|+.|+|++|++.+.+| .+..+++|+.|+
T Consensus 87 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLN 165 (197)
T ss_dssp CTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEE
T ss_pred CCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEE
Confidence 4556666666666665556666666666666666666665444 35666666666666666222444 466666666666
Q ss_pred ccCCcCcccCC
Q 042915 480 LQNNNLDGQIP 490 (501)
Q Consensus 480 Ls~N~l~g~lP 490 (501)
+++|+++ .+|
T Consensus 166 l~~n~i~-~~~ 175 (197)
T 4ezg_A 166 IQFDGVH-DYR 175 (197)
T ss_dssp CTTBCCC-CCT
T ss_pred CCCCCCc-ChH
Confidence 6666666 344
No 69
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=5.9e-10 Score=101.49 Aligned_cols=94 Identities=26% Similarity=0.337 Sum_probs=78.6
Q ss_pred CeeEEEecCCCCcccccCcccccCCC-CCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLT-ALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~-~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
+.+|+.|++++|+++. +|. +..+. +|+.|+|++|++++. +.+..+++|+.|+|++|++++..|..++.+++|+.|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 4578999999999994 555 55555 999999999999987 7899999999999999999965445568999999999
Q ss_pred ccCCcCcccCCc--cCC-CCCC
Q 042915 480 LQNNNLDGQIPD--GLW-KPGL 498 (501)
Q Consensus 480 Ls~N~l~g~lP~--~~~-~~~L 498 (501)
|++|+|+ .+|. .+. +++|
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSL 115 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTC
T ss_pred CCCCcCC-cchhhHhhhcCCCC
Confidence 9999997 7887 555 5544
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.97 E-value=7.1e-10 Score=109.77 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=83.2
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCC-CCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWG-QIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPIL 475 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~-~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L 475 (501)
...+++|+.|++++|.+.+..+..+.++++|+.|+|++|++++ .+| .+..+++|+.|+|++|++++..|..+..+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 3456788999999999998888889999999999999999987 344 57889999999999999998888899999999
Q ss_pred CEEEccCCcCcccCCccCC-CCCC
Q 042915 476 REIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 476 ~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
+.|+|++|++++..+..+. +++|
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTC
T ss_pred CEEECCCCccCccChhhccCcccC
Confidence 9999999999843333444 4444
No 71
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=6.8e-10 Score=120.09 Aligned_cols=93 Identities=29% Similarity=0.410 Sum_probs=82.3
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccC
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQN 482 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~ 482 (501)
.|+.|+|++|+|++ +|. ++.|++|+.|+|++|+|+..++.++.+++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 47789999999996 676 999999999999999999555579999999999999999996 77 899999999999999
Q ss_pred CcCcccC-CccCC-CCCCc
Q 042915 483 NNLDGQI-PDGLW-KPGLN 499 (501)
Q Consensus 483 N~l~g~l-P~~~~-~~~L~ 499 (501)
|+|++.. |..+. +++|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCC
T ss_pred CCCCCCCCcHHHhcCCCCC
Confidence 9999654 88887 66654
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.95 E-value=7e-10 Score=125.56 Aligned_cols=88 Identities=22% Similarity=0.241 Sum_probs=45.7
Q ss_pred CCeeEEEecCCCCcccccC-cccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccc--cCCCCCC
Q 042915 400 KHTRVVSIDLKGFEISGTL-PESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQT--LSQLPIL 475 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~-p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~--~~~l~~L 475 (501)
++++|+.|+|++|.+.+.+ |..|.+|++|++|+|++|++++..| .|.++++|+.|+|++|.+.+.+|.. ++.+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 3444455555555333333 4445555555555555555555544 3455555555555555555544443 5555555
Q ss_pred CEEEccCCcCcc
Q 042915 476 REIFLQNNNLDG 487 (501)
Q Consensus 476 ~~L~Ls~N~l~g 487 (501)
++|+|++|.+++
T Consensus 126 ~~L~Ls~N~l~~ 137 (844)
T 3j0a_A 126 TRLDLSKNQIRS 137 (844)
T ss_dssp CEEEEESCCCCC
T ss_pred CEEECCCCcccc
Confidence 555555555553
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=113.36 Aligned_cols=101 Identities=25% Similarity=0.345 Sum_probs=75.5
Q ss_pred CcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCc
Q 042915 390 SWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQ 460 (501)
Q Consensus 390 ~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~ 460 (501)
.+..+.|...++ .+++.|+|++|++++..+..|.++++|+.|+|++|++++..+ .|.++++|+.|+|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 356677765332 356778888888887777788888888888888888877766 47778888888888888
Q ss_pred CCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915 461 FEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 461 l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
+++..+..|..+++|++|+|++|+|+ .+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~ 153 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPS 153 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCC-EECT
T ss_pred CCeeCHhHhhccccCceeeCCCCccc-ccCH
Confidence 88555557788888888888888887 4554
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.95 E-value=1.8e-09 Score=115.82 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=86.2
Q ss_pred Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCc-cCc
Q 042915 390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEG-WIP 466 (501)
Q Consensus 390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g-~~P 466 (501)
...++... ..++++|+.|+|++|.+++..|..|.++++|++|++++|++++..+ .++++++|++|+|++|.+.+ .+|
T Consensus 63 ~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp 142 (570)
T 2z63_A 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence 34555432 4567889999999999988888889999999999999999987766 58899999999999999986 578
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 467 QTLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
..++++++|++|++++|++++..|..+.
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 170 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLR 170 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGGH
T ss_pred hhhcccCCCCEEeCcCCccceecHHHcc
Confidence 9999999999999999999855455554
No 75
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.94 E-value=1.7e-09 Score=117.17 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=64.2
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
..++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+ .++++++|++|+|++|++.+..+..+..+++|+
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence 3456677777777777776667777777777777777777776544 467777777777777777753323344477777
Q ss_pred EEEccCCcCcccCCccCC
Q 042915 477 EIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~~~~ 494 (501)
.|+|++|++++..|..+.
T Consensus 157 ~L~L~~n~l~~~~~~~~~ 174 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMS 174 (606)
T ss_dssp EEECCSSCCCEECHHHHH
T ss_pred EEEcccCcccccChhhhh
Confidence 777777777744444443
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.94 E-value=1.8e-09 Score=117.30 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=88.4
Q ss_pred Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915 390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
...++.. ....+++|+.|+|++|.+++..|..|+++++|++|+|++|.+++.++. |+.+++|+.|+|++|.+.+..|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 3455543 456788999999999999998888899999999999999999987776 69999999999999999988888
Q ss_pred ccCCCCCCCEEEccCCcCcccCCc
Q 042915 468 TLSQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
.|+.+++|+.|+|++|.|++ +|.
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~-~~~ 188 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTH-VDL 188 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSB-CCG
T ss_pred hhhcCCcCcEEECcCCCCCC-cCh
Confidence 99999999999999999984 553
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.94 E-value=1.3e-09 Score=117.52 Aligned_cols=94 Identities=23% Similarity=0.219 Sum_probs=62.1
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
++++.|+|++|++++..+..|.++++|++|+|++|++++..|+ |.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 4567777777777766666777777777777777777766553 677777777777777776 55554 6677777777
Q ss_pred cCCcCcc-cCCccCC-CCCC
Q 042915 481 QNNNLDG-QIPDGLW-KPGL 498 (501)
Q Consensus 481 s~N~l~g-~lP~~~~-~~~L 498 (501)
++|++++ .+|..+. +++|
T Consensus 129 s~N~l~~l~~p~~~~~l~~L 148 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKL 148 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTC
T ss_pred CCCCccccCchHhhcccCcc
Confidence 7777763 2334554 4444
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=7e-10 Score=118.03 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCc-cCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG-WIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~~L 478 (501)
.+++|+.|+|++|++++..|..|.++++|++|+|++|+++. +|.. .+++|++|+|++|++++ .+|..++.+++|++|
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 120 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc-ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence 34455555555555555555555555555555555555553 2222 45555555555555554 345555555555555
Q ss_pred EccCCcCc
Q 042915 479 FLQNNNLD 486 (501)
Q Consensus 479 ~Ls~N~l~ 486 (501)
+|++|+++
T Consensus 121 ~L~~n~l~ 128 (520)
T 2z7x_B 121 GLSTTHLE 128 (520)
T ss_dssp EEEESSCC
T ss_pred EecCcccc
Confidence 55555554
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.93 E-value=2.2e-09 Score=109.97 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=87.2
Q ss_pred Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915 390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
...++.. ....+++|+.|+|++|++++..|..+.++++|++|+|++|+++..++. +..+++|+.|+|++|++.+..|.
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh
Confidence 3444543 356778999999999999988888899999999999999999977766 58999999999999999988888
Q ss_pred ccCCCCCCCEEEccCCcCcccCC
Q 042915 468 TLSQLPILREIFLQNNNLDGQIP 490 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g~lP 490 (501)
.++.+++|+.|+|++|+++ .++
T Consensus 160 ~~~~l~~L~~L~l~~n~l~-~~~ 181 (390)
T 3o6n_A 160 TFQATTSLQNLQLSSNRLT-HVD 181 (390)
T ss_dssp TTSSCTTCCEEECCSSCCS-BCC
T ss_pred hccCCCCCCEEECCCCcCC-ccc
Confidence 8999999999999999998 455
No 80
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.7e-10 Score=130.45 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=86.6
Q ss_pred CCcceeeecCCCCeeEEEecCCCCcccc-----------------cCccccc--CCCCCCeeecCCCcCCCCCc-CCCCC
Q 042915 389 NSWTGVTCNKSKHTRVVSIDLKGFEISG-----------------TLPESIG--NLTALKHLRLGGNKLWGQIP-EMKTL 448 (501)
Q Consensus 389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g-----------------~~p~~~~--~L~~L~~L~Ls~N~l~~~~p-~~~~l 448 (501)
+.+.+++....++++|+.|+|++|+|+| .+|+.++ +|++|+.|+|++|++.+.+| .++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4566677667778889999999999988 3888877 89999999999999888888 47888
Q ss_pred CCCCEEEccCCc-CCc-cCccccCCCC-------CCCEEEccCCcCcccCCc--cCC-CCCC
Q 042915 449 TALETLHLENNQ-FEG-WIPQTLSQLP-------ILREIFLQNNNLDGQIPD--GLW-KPGL 498 (501)
Q Consensus 449 ~~L~~L~Ls~N~-l~g-~~P~~~~~l~-------~L~~L~Ls~N~l~g~lP~--~~~-~~~L 498 (501)
++|+.|+|++|+ ++| .+|..++.++ +|+.|+|++|.|+ .+|. .+. +++|
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL 575 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence 889999999887 887 7777655544 8888888888888 7887 665 5544
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.93 E-value=2.3e-09 Score=107.52 Aligned_cols=99 Identities=23% Similarity=0.316 Sum_probs=71.6
Q ss_pred CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCC
Q 042915 389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENN 459 (501)
Q Consensus 389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N 459 (501)
|.|..+.|.... .++++.|+|++|++++..|..+.++++|++|+|++|++++..| .+.++++|+.|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 567778776432 2367888888888887777788888888888888888887766 4788888888888888
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCcccCCc
Q 042915 460 QFEGWIPQTLSQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
++. .+|..+. ++|++|++++|+++ .+|.
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~ 140 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIR-KVPK 140 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCC-CCCS
T ss_pred cCC-ccCcccc--ccCCEEECCCCccC-ccCH
Confidence 777 5555443 56666666666666 3443
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.93 E-value=2.5e-10 Score=113.78 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=68.7
Q ss_pred CCCeeEEEecCCCCcccccCcccccCC-----CCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCcc--Ccccc-
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNL-----TALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGW--IPQTL- 469 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~--~P~~~- 469 (501)
..+++|+.|+|++|++++. |..+..+ ++|++|+|++|++++.++ .++.+++|+.|+|++|++.+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4567888888888888866 7777776 888888888888888775 478888888888888887765 34444
Q ss_pred -CCCCCCCEEEccCCcCc
Q 042915 470 -SQLPILREIFLQNNNLD 486 (501)
Q Consensus 470 -~~l~~L~~L~Ls~N~l~ 486 (501)
+.+++|++|+|++|+|+
T Consensus 197 ~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TTSCTTCCEEECTTSCCC
T ss_pred hccCCCCCEEECCCCcCc
Confidence 78888888888888887
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.92 E-value=1.5e-09 Score=119.39 Aligned_cols=93 Identities=24% Similarity=0.212 Sum_probs=75.1
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
++++|+.|+|++|++++..+..|.++++|++|+|++|++++.+| .++++++|++|+|++|.+++..|..++.+++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 45678888888888886555678888888888888888887776 47888888888888888888888888888888888
Q ss_pred EccCCcCcccCCcc
Q 042915 479 FLQNNNLDGQIPDG 492 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~ 492 (501)
+|++|.+++..|..
T Consensus 151 ~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 151 LLSNNKIQALKSEE 164 (680)
T ss_dssp ECCSSCCCCBCHHH
T ss_pred EccCCcccccCHHH
Confidence 88888888544443
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.91 E-value=1.2e-09 Score=116.88 Aligned_cols=101 Identities=23% Similarity=0.202 Sum_probs=76.7
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCC-C-cCCCCCCCCCEEEccCCcCCccCc-cccCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQ-I-PEMKTLTALETLHLENNQFEGWIP-QTLSQLPI 474 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~-~-p~~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~ 474 (501)
...+++|+.|+|++|++++..|..++++++|++|+|++|++++. . +.++++++|+.|+|++|.+.+.+| ..+..+++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 45667888888888888877777788888888888888888753 3 357888888888888888544555 57888888
Q ss_pred CCEEEccCCcCcccCCccCC-CCCC
Q 042915 475 LREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 475 L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
|++|+|++|.+++.+|..+. +++|
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEE
T ss_pred cCeeeccCCcccccChhhhhccccC
Confidence 88888888888877777776 4433
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.91 E-value=1.4e-09 Score=115.36 Aligned_cols=96 Identities=26% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCeeEEEecCCCCcccccCccccc-CCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIG-NLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. +....+++|+.|+|++|.+++ +|..+..+++|+.|
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 456788888888888877777665 678888888888887766 444457788888888888875 44447777888888
Q ss_pred EccCCcCcccCCccCC-CCCC
Q 042915 479 FLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~~~-~~~L 498 (501)
+|++|.|+ .+|..+. ++.|
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~L 239 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQNL 239 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTTC
T ss_pred EecCCcCc-ccchhhccCCCC
Confidence 88888887 4777665 4443
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.90 E-value=2.9e-09 Score=106.58 Aligned_cols=95 Identities=25% Similarity=0.344 Sum_probs=70.4
Q ss_pred CCcceeeecCCC--------CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCC
Q 042915 389 NSWTGVTCNKSK--------HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENN 459 (501)
Q Consensus 389 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N 459 (501)
|.|+.+.|.... .++++.|+|++|++++..+..|.++++|++|+|++|++++..| .+..+++|+.|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 568888886432 2367889999999987777788889999999999999988866 4788888888888888
Q ss_pred cCCccCccccCCCCCCCEEEccCCcCc
Q 042915 460 QFEGWIPQTLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 460 ~l~g~~P~~~~~l~~L~~L~Ls~N~l~ 486 (501)
+++ .+|..+. ++|+.|++++|+++
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~ 134 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEIT 134 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCC
T ss_pred cCC-ccChhhc--ccccEEECCCCccc
Confidence 877 5555433 45555555555555
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.90 E-value=2e-09 Score=118.32 Aligned_cols=100 Identities=24% Similarity=0.188 Sum_probs=78.2
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
.++++|+.|+|++|.+++..|..+.++++|++|+|++|++++.++. |+++++|++|+|++|++.+..|..|+.+++|++
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence 3456778888888888877777788888888888888888876663 788888888888888888766678888888888
Q ss_pred EEccCCcCcccCCccCC-CCCC
Q 042915 478 IFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
|+|++|.+++..|..+. +++|
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTC
T ss_pred EECCCCcccccCchhhcccccC
Confidence 88888888866666665 5544
No 88
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.90 E-value=1.9e-09 Score=109.11 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=85.0
Q ss_pred Ccceeee-cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCEEEccCC-cCCccC
Q 042915 390 SWTGVTC-NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALETLHLENN-QFEGWI 465 (501)
Q Consensus 390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~L~Ls~N-~l~g~~ 465 (501)
...++.. ....+++|+.|+|++|++++..+..+.++++|++|+|++|++++..+ .+..+++|+.|+|++| .+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 3444443 24567788999999999986555558889999999999999987665 4788999999999998 466566
Q ss_pred ccccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 466 PQTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 466 P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
|..++.+++|+.|++++|.+++..|..+. +++|
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 77888899999999999999877677776 5444
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.89 E-value=2.1e-09 Score=107.33 Aligned_cols=91 Identities=26% Similarity=0.263 Sum_probs=51.0
Q ss_pred CeeEEEecCCCCcccccCcccc-cCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESI-GNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~-~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|++++. +....+++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEEE
Confidence 4456666666666665544444 3456666666666666544 333345666666666666653 333455566666666
Q ss_pred ccCCcCcccCCccCC
Q 042915 480 LQNNNLDGQIPDGLW 494 (501)
Q Consensus 480 Ls~N~l~g~lP~~~~ 494 (501)
|++|+|+ .+|..+.
T Consensus 221 L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 221 LRNNKLV-LIEKALR 234 (317)
T ss_dssp CTTSCCC-EECTTCC
T ss_pred CcCCccc-chhhHhh
Confidence 6666665 4555544
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.88 E-value=1.1e-09 Score=101.69 Aligned_cols=96 Identities=21% Similarity=0.308 Sum_probs=80.5
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
..+++|+.|++++|.++ .++.+..+++|++|++++|++++..+ .+..+++|+.|+|++|++++..|..++.+++|++
T Consensus 63 ~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 34568999999999775 33478999999999999999998544 6899999999999999999888999999999999
Q ss_pred EEccCCc-CcccCCccCC-CCCC
Q 042915 478 IFLQNNN-LDGQIPDGLW-KPGL 498 (501)
Q Consensus 478 L~Ls~N~-l~g~lP~~~~-~~~L 498 (501)
|+|++|+ ++ .+| .+. +++|
T Consensus 141 L~L~~n~~i~-~~~-~l~~l~~L 161 (197)
T 4ezg_A 141 IDLSYNGAIT-DIM-PLKTLPEL 161 (197)
T ss_dssp EECCSCTBCC-CCG-GGGGCSSC
T ss_pred EEccCCCCcc-ccH-hhcCCCCC
Confidence 9999998 65 777 344 5544
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=3.9e-09 Score=114.71 Aligned_cols=94 Identities=19% Similarity=0.156 Sum_probs=74.5
Q ss_pred Ccceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCcc
Q 042915 390 SWTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 390 ~w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
...++... .+.+++|+.|+|++|.|++..+..|.++++|+.|+|++|.+++.+|. +..+++|+.|+|++|.+.+..
T Consensus 110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--
Confidence 34444433 36778999999999999966666679999999999999999998884 899999999999999998643
Q ss_pred ccCCCCCCCEEEccCCcCc
Q 042915 468 TLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~ 486 (501)
++.+++|+.|++++|.++
T Consensus 188 -~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 188 -LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp -GGGCTTCSEEECCSSCCS
T ss_pred -hhhhhhhhhhhcccCccc
Confidence 445566777777666665
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.88 E-value=4.4e-09 Score=110.16 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCcc-ccCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQ-TLSQLPIL 475 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~-~~~~l~~L 475 (501)
..++++|+.|+|++|+|++..+..|.++++|++|+|++|+++...+ .+.++++|+.|+|++|+..+.+|. .|..+++|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 4456777888888888876666667778888888888888876665 367788888888887443334443 57788888
Q ss_pred CEEEccCCcCcccCCc
Q 042915 476 REIFLQNNNLDGQIPD 491 (501)
Q Consensus 476 ~~L~Ls~N~l~g~lP~ 491 (501)
+.|+|++|+|+ .+|.
T Consensus 199 ~~L~L~~n~l~-~~~~ 213 (452)
T 3zyi_A 199 KYLNLGMCNIK-DMPN 213 (452)
T ss_dssp CEEECTTSCCS-SCCC
T ss_pred CEEECCCCccc-cccc
Confidence 88888888888 5664
No 93
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.87 E-value=4.9e-09 Score=109.46 Aligned_cols=93 Identities=20% Similarity=0.231 Sum_probs=66.5
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCc-cccCCCCCC
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIP-QTLSQLPIL 475 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~L 475 (501)
..++++|+.|+|++|+|++..+..|..+++|+.|+|++|+++...+ .+..+++|+.|+|++|+..+.++ ..|.++++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 3456677777777777776656667777777788887777776665 36777778888887744333444 367788888
Q ss_pred CEEEccCCcCcccCCc
Q 042915 476 REIFLQNNNLDGQIPD 491 (501)
Q Consensus 476 ~~L~Ls~N~l~g~lP~ 491 (501)
+.|+|++|+|+ .+|.
T Consensus 188 ~~L~L~~n~l~-~~~~ 202 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIPN 202 (440)
T ss_dssp CEEECTTSCCS-SCCC
T ss_pred CeecCCCCcCc-cccc
Confidence 88888888887 6774
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.87 E-value=1.6e-09 Score=109.85 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=87.9
Q ss_pred CCCcceeeecCCCC--------eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc--CCCCCCCCCE-EEc
Q 042915 388 ENSWTGVTCNKSKH--------TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP--EMKTLTALET-LHL 456 (501)
Q Consensus 388 ~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p--~~~~l~~L~~-L~L 456 (501)
.|.+..|.|...++ .++++|+|++|+|+...+..|.+|++|++|+|++|++.+.+| .|.++++|+. +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 36788899975433 368999999999997666789999999999999999987766 3789988875 667
Q ss_pred cCCcCCccCccccCCCCCCCEEEccCCcCcccCCccC
Q 042915 457 ENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGL 493 (501)
Q Consensus 457 s~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~ 493 (501)
+.|++.+..|..|..+++|+.|++++|+|+ .+|...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~ 123 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVH 123 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCT
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchh
Confidence 789999888889999999999999999998 566543
No 95
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.87 E-value=5.7e-09 Score=106.92 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=74.2
Q ss_pred cceeeec-CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCCccCccc
Q 042915 391 WTGVTCN-KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFEGWIPQT 468 (501)
Q Consensus 391 w~gv~c~-~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~ 468 (501)
..++... ...+++|+.|+|++|+++...+..+.++++|++|++++|++++..+. +..+++|+.|+|++|++++. .
T Consensus 105 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~ 181 (390)
T 3o6n_A 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---D 181 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---C
T ss_pred CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---c
Confidence 4444332 45678999999999999955555579999999999999999988775 89999999999999999854 2
Q ss_pred cCCCCCCCEEEccCCcCc
Q 042915 469 LSQLPILREIFLQNNNLD 486 (501)
Q Consensus 469 ~~~l~~L~~L~Ls~N~l~ 486 (501)
++.+++|+.|++++|.++
T Consensus 182 ~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp GGGCTTCSEEECCSSCCS
T ss_pred cccccccceeeccccccc
Confidence 455677777777777776
No 96
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.85 E-value=3.3e-09 Score=113.82 Aligned_cols=93 Identities=23% Similarity=0.369 Sum_probs=63.0
Q ss_pred CCCeeEEEecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 399 SKHTRVVSIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
..+++|+.|+|++|.+. +.+|..+..+++|+.|+|++|++++..| .+..+++|+.|+|++|++++..|..+..+++|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 34556677777777765 4566667777777777777777776655 366677777777777777766666667777777
Q ss_pred EEEccCCcCcccCCc
Q 042915 477 EIFLQNNNLDGQIPD 491 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~ 491 (501)
.|++++|++++..|.
T Consensus 522 ~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 522 KIWLHTNPWDCSCPR 536 (570)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEecCCcccCCCcc
Confidence 777777777666553
No 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.85 E-value=4.6e-09 Score=105.12 Aligned_cols=88 Identities=25% Similarity=0.373 Sum_probs=54.3
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+ .+..+++|+.|+|++|+++ .+|..+..+++|+.|+|
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 355566666666665556666666666666666666665555 3566666666666666666 55666666666666666
Q ss_pred cCCcCcccCCc
Q 042915 481 QNNNLDGQIPD 491 (501)
Q Consensus 481 s~N~l~g~lP~ 491 (501)
++|+|+ .+|.
T Consensus 271 ~~N~i~-~~~~ 280 (330)
T 1xku_A 271 HNNNIS-AIGS 280 (330)
T ss_dssp CSSCCC-CCCT
T ss_pred CCCcCC-ccCh
Confidence 666666 3443
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.84 E-value=2.5e-09 Score=101.98 Aligned_cols=102 Identities=15% Similarity=0.210 Sum_probs=83.1
Q ss_pred cceeee-cCCCCeeEEEecCCC-CcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCC---EEEccCC-cCCcc
Q 042915 391 WTGVTC-NKSKHTRVVSIDLKG-FEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALE---TLHLENN-QFEGW 464 (501)
Q Consensus 391 w~gv~c-~~~~l~~l~~L~Ls~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~---~L~Ls~N-~l~g~ 464 (501)
...+.. ....+++|+.|+|++ |++++..+..|.++++|+.|++++|++++ +|.+..+++|+ .|+|++| ++++.
T Consensus 68 l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp CCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred cceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhc
Confidence 344443 234567889999998 99987777888999999999999999987 55588888888 9999999 88866
Q ss_pred CccccCCCCCCC-EEEccCCcCcccCCccCC
Q 042915 465 IPQTLSQLPILR-EIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 465 ~P~~~~~l~~L~-~L~Ls~N~l~g~lP~~~~ 494 (501)
.+..|..+++|+ .|+|++|+++ .+|...+
T Consensus 147 ~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~ 176 (239)
T 2xwt_C 147 PVNAFQGLCNETLTLKLYNNGFT-SVQGYAF 176 (239)
T ss_dssp CTTTTTTTBSSEEEEECCSCCCC-EECTTTT
T ss_pred CcccccchhcceeEEEcCCCCCc-ccCHhhc
Confidence 666789999999 9999999998 7887655
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.82 E-value=3.4e-09 Score=112.47 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=88.3
Q ss_pred CCcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCC-CCCCCCEEEccCCcCCccCc
Q 042915 389 NSWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMK-TLTALETLHLENNQFEGWIP 466 (501)
Q Consensus 389 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~-~l~~L~~L~Ls~N~l~g~~P 466 (501)
|.+.++.|. .+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+| .+. .+++|+.|+|++|.+++. |
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 356677775 35789999999999999989999999999999999999999877 454 899999999999999965 3
Q ss_pred cccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 467 QTLSQLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 467 ~~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
. +..+++|+.|+|++|.|++ +|+.+. ++.|
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L 216 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGV 216 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTC
T ss_pred c-cccCCCCCEEECCCCCCCC-CCHhHcCCCCc
Confidence 3 4468999999999999995 776665 5544
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=6.7e-09 Score=102.55 Aligned_cols=86 Identities=24% Similarity=0.300 Sum_probs=59.8
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
.+++|+.|+|++|++++. +.+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+++ +|. +..+++|+.|+
T Consensus 132 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~ 206 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLE 206 (291)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEE
T ss_pred CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEE
Confidence 455677777777777654 457777777777777777776555 7777777777777777763 443 67777777777
Q ss_pred ccCCcCcccCCc
Q 042915 480 LQNNNLDGQIPD 491 (501)
Q Consensus 480 Ls~N~l~g~lP~ 491 (501)
|++|+++ ..|.
T Consensus 207 l~~n~i~-~~~~ 217 (291)
T 1h6t_A 207 LFSQECL-NKPI 217 (291)
T ss_dssp EEEEEEE-CCCE
T ss_pred CcCCccc-CCcc
Confidence 7777776 3443
No 101
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.79 E-value=6.7e-09 Score=111.82 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=63.7
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCc-cCccccCCCCCCCE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEG-WIPQTLSQLPILRE 477 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g-~~P~~~~~l~~L~~ 477 (501)
..+++|+.|+|++|++++..|..|.++++|++|+|++|+++..++. .+++|+.|+|++|++++ .+|..++++++|++
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF 150 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence 4556777788888887777777777778888888888877744333 67778888888887775 34567777777888
Q ss_pred EEccCCcCcc
Q 042915 478 IFLQNNNLDG 487 (501)
Q Consensus 478 L~Ls~N~l~g 487 (501)
|+|++|++++
T Consensus 151 L~L~~n~l~~ 160 (562)
T 3a79_B 151 LGLSAAKFRQ 160 (562)
T ss_dssp EEEECSBCCT
T ss_pred EecCCCcccc
Confidence 8877777763
No 102
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.79 E-value=5.8e-09 Score=118.00 Aligned_cols=94 Identities=23% Similarity=0.224 Sum_probs=58.7
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-C--CCCCCCCCEEEccCCcCCccCc-cccCCCCCC
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-E--MKTLTALETLHLENNQFEGWIP-QTLSQLPIL 475 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~--~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~L 475 (501)
++++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++.++ . +.++++|+.|+|++|.+.+..| ..|+++++|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 44566666666666666666666666666666666666666443 2 5666666666666666665443 356666666
Q ss_pred CEEEccCCcCcccCCccC
Q 042915 476 REIFLQNNNLDGQIPDGL 493 (501)
Q Consensus 476 ~~L~Ls~N~l~g~lP~~~ 493 (501)
++|+|++|.+++..|..+
T Consensus 151 ~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CEEEEESSCCCCCCSGGG
T ss_pred CEEECCCCcCCeeCHHHc
Confidence 666666666665444443
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.79 E-value=1.9e-09 Score=107.16 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=61.1
Q ss_pred CCeeEEEecCCCCcccccCcc----cccCCCCCCeeecCCCcCCCCCc-CCCCC---CCCCEEEccCCcCCccCccccCC
Q 042915 400 KHTRVVSIDLKGFEISGTLPE----SIGNLTALKHLRLGGNKLWGQIP-EMKTL---TALETLHLENNQFEGWIPQTLSQ 471 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~----~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l---~~L~~L~Ls~N~l~g~~P~~~~~ 471 (501)
.+++|+.|+|++|+++. ++. .+..+++|++|+|++|++++..| .+..+ ++|+.|+|++|+++ .+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 45677777888877752 222 24677888888888888887754 44444 68888888888887 6677664
Q ss_pred CCCCCEEEccCCcCcccCCc
Q 042915 472 LPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 472 l~~L~~L~Ls~N~l~g~lP~ 491 (501)
++|+.|+|++|+|++ +|.
T Consensus 272 -~~L~~L~Ls~N~l~~-~~~ 289 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNR-APQ 289 (310)
T ss_dssp -SCCSCEECCSCCCCS-CCC
T ss_pred -CCCCEEECCCCcCCC-Cch
Confidence 678888888888874 443
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.78 E-value=2e-08 Score=100.54 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=39.7
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
+++|+.|+|++|++++..|..+.++++|++|+|++|+++..++.+. ++|+.|+|++|++.+..+..+..+++|+.|++
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 3445555555555554445555555555555555555543322222 44455555555544333334444444555555
Q ss_pred cCCcC
Q 042915 481 QNNNL 485 (501)
Q Consensus 481 s~N~l 485 (501)
++|.+
T Consensus 155 ~~n~l 159 (332)
T 2ft3_A 155 GGNPL 159 (332)
T ss_dssp CSCCC
T ss_pred CCCcc
Confidence 44444
No 105
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.78 E-value=1.1e-08 Score=101.69 Aligned_cols=88 Identities=23% Similarity=0.352 Sum_probs=73.6
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
...+++|+.|+|++|++++ ++. +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++ ++. +..+++|+.
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred hcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence 4457789999999999986 343 8899999999999999987654 8889999999999999985 444 889999999
Q ss_pred EEccCCcCcccCCc
Q 042915 478 IFLQNNNLDGQIPD 491 (501)
Q Consensus 478 L~Ls~N~l~g~lP~ 491 (501)
|+|++|+++ .+|.
T Consensus 178 L~l~~n~l~-~~~~ 190 (308)
T 1h6u_A 178 LKADDNKIS-DISP 190 (308)
T ss_dssp EECCSSCCC-CCGG
T ss_pred EECCCCccC-cChh
Confidence 999999998 5664
No 106
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.77 E-value=5.2e-09 Score=111.29 Aligned_cols=97 Identities=18% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCeeEEEecCCCCcccc--cCcccccCCCCCCeeecCCCcCCCCCc-C-CCCCCCCCEEEccCCcCCccCccccCCCCC
Q 042915 399 SKHTRVVSIDLKGFEISG--TLPESIGNLTALKHLRLGGNKLWGQIP-E-MKTLTALETLHLENNQFEGWIPQTLSQLPI 474 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~ 474 (501)
..+++|+.|+|++|++++ .+|..+..+++|+.|++++|++++.+| . +..+++|+.|+|++|++++.+|..+. ++
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 445677777777777775 455667777777777777777777444 2 57777777888887777777766654 67
Q ss_pred CCEEEccCCcCcccCCccCC-CCCC
Q 042915 475 LREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 475 L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
|+.|+|++|+|+ .+|..++ +++|
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L 446 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEAL 446 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred CCEEECCCCccc-ccchhhhcCCCC
Confidence 888888888887 7887665 4444
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=1.1e-08 Score=100.93 Aligned_cols=95 Identities=29% Similarity=0.444 Sum_probs=79.9
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
...+++|+.|+|++|++++. +.+..+++|+.|++++|++++. +.+..+++|+.|+|++|++++..| +..+++|+.
T Consensus 108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 45678899999999999864 4688999999999999999876 778999999999999999996544 899999999
Q ss_pred EEccCCcCcccCCccCC-CCCCc
Q 042915 478 IFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
|+|++|+|+ .+|. +. +++|+
T Consensus 183 L~L~~N~i~-~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 183 LYLSKNHIS-DLRA-LAGLKNLD 203 (291)
T ss_dssp EECCSSCCC-BCGG-GTTCTTCS
T ss_pred EECCCCcCC-CChh-hccCCCCC
Confidence 999999998 5765 44 55543
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.76 E-value=1.1e-08 Score=101.78 Aligned_cols=88 Identities=24% Similarity=0.302 Sum_probs=60.8
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
.+++|+.|+|++|++++. +. +..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++.. .+..+++|+.|+
T Consensus 149 ~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~ 223 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVT 223 (308)
T ss_dssp GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEE
T ss_pred CCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEE
Confidence 456677777777777743 33 7777777777777777775443 677777777777777777443 267777777777
Q ss_pred ccCCcCcccCCccC
Q 042915 480 LQNNNLDGQIPDGL 493 (501)
Q Consensus 480 Ls~N~l~g~lP~~~ 493 (501)
|++|+++ ..|..+
T Consensus 224 l~~N~i~-~~~~~~ 236 (308)
T 1h6u_A 224 LTNQTIT-NQPVFY 236 (308)
T ss_dssp EEEEEEE-CCCEEC
T ss_pred ccCCeee-cCCeee
Confidence 7777776 455433
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.75 E-value=1.5e-08 Score=98.61 Aligned_cols=93 Identities=23% Similarity=0.291 Sum_probs=65.6
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
...+++|+.|+|++|++++ +|.. .. ++|+.|+|++|++++. +.+..+++|+.|+|++|++++ +| .++.+++|+.
T Consensus 81 l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~ 154 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEV 154 (263)
T ss_dssp GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCE
T ss_pred hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCE
Confidence 4456777788888887774 3332 22 7788888888887763 567788888888888888875 44 5778888888
Q ss_pred EEccCCcCcccCCccCC-CCCC
Q 042915 478 IFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
|+|++|++++ + ..+. +++|
T Consensus 155 L~L~~N~i~~-~-~~l~~l~~L 174 (263)
T 1xeu_A 155 LDLHGNEITN-T-GGLTRLKKV 174 (263)
T ss_dssp EECTTSCCCB-C-TTSTTCCCC
T ss_pred EECCCCcCcc-h-HHhccCCCC
Confidence 8888888884 4 3444 4444
No 110
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.74 E-value=3.9e-09 Score=105.10 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=83.6
Q ss_pred Ccceeee-cCCCCeeEEEecCCCCccccc--Ccccc--cCCCCCCeeecCCCcCCCCC--c-C-CCCCCCCCEEEccCCc
Q 042915 390 SWTGVTC-NKSKHTRVVSIDLKGFEISGT--LPESI--GNLTALKHLRLGGNKLWGQI--P-E-MKTLTALETLHLENNQ 460 (501)
Q Consensus 390 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~--~p~~~--~~L~~L~~L~Ls~N~l~~~~--p-~-~~~l~~L~~L~Ls~N~ 460 (501)
...++.+ ....+++|+.|+|++|++.+. ++..+ .++++|++|+|++|++++.. + . +..+++|+.|+|++|+
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 3444553 345678999999999998765 34444 89999999999999998532 2 2 3688999999999999
Q ss_pred CCccCc-cccCCCCCCCEEEccCCcCcccCCccCC
Q 042915 461 FEGWIP-QTLSQLPILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 461 l~g~~P-~~~~~l~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
+++..| ..+..+++|+.|+|++|+|+ .+|..+.
T Consensus 240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 240 LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 998775 45677899999999999999 8998776
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.74 E-value=7.6e-09 Score=102.79 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=69.2
Q ss_pred CCCeeEEEecCCCCcccccCc----ccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCcc--Cc--ccc
Q 042915 399 SKHTRVVSIDLKGFEISGTLP----ESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGW--IP--QTL 469 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p----~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~--~P--~~~ 469 (501)
..+++|+.|+|++|.+.+..+ ..+..+++|++|+|++|++.+.++ .++.+++|++|+|++|++.+. ++ ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 456788888888888886554 334578888888888888887776 478888888888888887652 22 234
Q ss_pred CCCCCCCEEEccCCcCcccCCc
Q 042915 470 SQLPILREIFLQNNNLDGQIPD 491 (501)
Q Consensus 470 ~~l~~L~~L~Ls~N~l~g~lP~ 491 (501)
+.+++|++|+|++|+++ .+|.
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~ 214 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTG 214 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHH
T ss_pred hcCCCCCEEECCCCCCC-chHH
Confidence 67888888888888887 4443
No 112
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.73 E-value=1.1e-08 Score=102.15 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=85.6
Q ss_pred CcceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcC-C-CCCCCCCEEEccCCcCCccCcc
Q 042915 390 SWTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPE-M-KTLTALETLHLENNQFEGWIPQ 467 (501)
Q Consensus 390 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~-~~l~~L~~L~Ls~N~l~g~~P~ 467 (501)
...++.+.. +++|+.|++++|++++..+..+..+++|+.|+|++|++++..+. + ..+++|+.|+|++|++++. |.
T Consensus 110 ~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~ 186 (317)
T 3o53_A 110 NISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (317)
T ss_dssp CCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred ccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc
Confidence 445555542 56899999999999988888999999999999999999987664 5 5799999999999999854 43
Q ss_pred ccCCCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 468 TLSQLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
...+++|+.|+|++|+|+ .+|..+. +++|
T Consensus 187 -~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L 216 (317)
T 3o53_A 187 -QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216 (317)
T ss_dssp -CCCCTTCCEEECCSSCCC-EECGGGGGGTTC
T ss_pred -ccccccCCEEECCCCcCC-cchhhhcccCcc
Confidence 445899999999999999 5777765 5544
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.73 E-value=9.9e-09 Score=103.15 Aligned_cols=90 Identities=24% Similarity=0.384 Sum_probs=74.0
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
...+++|+.|++++|.+++. +.+..+++|+.|++++|++++. +.+..+++|+.|+|++|++.+..|..++.+++|+.
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 34567888899999988753 4588889999999999988865 66788899999999999998888888888999999
Q ss_pred EEccCCcCcccCC
Q 042915 478 IFLQNNNLDGQIP 490 (501)
Q Consensus 478 L~Ls~N~l~g~lP 490 (501)
|+|++|++++..|
T Consensus 316 L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 316 LFLSQNHITDIRP 328 (347)
T ss_dssp EECCSSSCCCCGG
T ss_pred EEccCCccccccC
Confidence 9999999985434
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.72 E-value=2.5e-08 Score=96.98 Aligned_cols=85 Identities=25% Similarity=0.218 Sum_probs=75.0
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
.+|+.|+|++|++++. + .+..+++|+.|+|++|++++. +.+..+++|+.|+|++|++++. ..+..+++|+.|+|+
T Consensus 106 ~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEE
T ss_pred CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCC
Confidence 6899999999999863 4 589999999999999999875 5788999999999999999965 678999999999999
Q ss_pred CCcCcccCCcc
Q 042915 482 NNNLDGQIPDG 492 (501)
Q Consensus 482 ~N~l~g~lP~~ 492 (501)
+|+++ ..|..
T Consensus 181 ~N~~~-~~~~~ 190 (263)
T 1xeu_A 181 GQKCV-NEPVK 190 (263)
T ss_dssp EEEEE-CCCEE
T ss_pred CCccc-CCccc
Confidence 99998 45644
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.72 E-value=2e-08 Score=109.34 Aligned_cols=86 Identities=24% Similarity=0.312 Sum_probs=67.3
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
..+++|+.|+|++|.|++. ..+..|++|+.|+|++|++.+.+| +..+++|+.|+|++|+|++ +| .+..+++|+.|
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L 202 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVL 202 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEE
T ss_pred cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEE
Confidence 3456788888888888754 567888888888888888887766 7888888888888888875 33 57888888888
Q ss_pred EccCCcCcccCC
Q 042915 479 FLQNNNLDGQIP 490 (501)
Q Consensus 479 ~Ls~N~l~g~lP 490 (501)
+|++|++++ .|
T Consensus 203 ~L~~N~l~~-~p 213 (605)
T 1m9s_A 203 ELFSQECLN-KP 213 (605)
T ss_dssp ECCSEEEEC-CC
T ss_pred EccCCcCcC-Cc
Confidence 888888873 44
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.69 E-value=2e-08 Score=109.45 Aligned_cols=95 Identities=29% Similarity=0.456 Sum_probs=80.8
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
...+++|+.|+|++|.|.+ + +.+..|++|+.|+|++|++++. +.+..|++|+.|+|++|++.+..| +..+++|+.
T Consensus 105 l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 4567889999999999986 3 4589999999999999999976 778999999999999999997666 999999999
Q ss_pred EEccCCcCcccCCccCC-CCCCc
Q 042915 478 IFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 478 L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
|+|++|+|+ .+|. +. +++|+
T Consensus 180 L~Ls~N~i~-~l~~-l~~l~~L~ 200 (605)
T 1m9s_A 180 LYLSKNHIS-DLRA-LAGLKNLD 200 (605)
T ss_dssp EECCSSCCC-BCGG-GTTCTTCS
T ss_pred EECcCCCCC-CChH-HccCCCCC
Confidence 999999999 4653 44 55543
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.61 E-value=4.9e-08 Score=102.61 Aligned_cols=88 Identities=24% Similarity=0.295 Sum_probs=71.2
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
..+++|+.|+|++|++++..| +..+++|+.|++++|++++. +.+..+++|+.|+|++|++++..| +..+++|+.|
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 345678888888888886655 77888888888888888875 667888899999999999887766 7888899999
Q ss_pred EccCCcCcccCCcc
Q 042915 479 FLQNNNLDGQIPDG 492 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~ 492 (501)
++++|++++ +|..
T Consensus 381 ~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 381 GLNDQAWTN-APVN 393 (466)
T ss_dssp ECCCEEEEC-CCBC
T ss_pred eccCCcccC-Cchh
Confidence 999998884 5544
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.57 E-value=2.8e-08 Score=107.29 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=72.0
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCC-------CEEEccCCcCCccCccccCCC
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTAL-------ETLHLENNQFEGWIPQTLSQL 472 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L-------~~L~Ls~N~l~g~~P~~~~~l 472 (501)
.+++|+.|+|++|+|++ +|. +. ++|+.|+|++|+|+..++ +.. +| +.|+|++|+|+ .+|..+..+
T Consensus 158 ~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 158 LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 35689999999999996 676 66 899999999999995544 543 66 99999999999 689988889
Q ss_pred CCCCEEEccCCcCcccCCccCC
Q 042915 473 PILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 473 ~~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
++|+.|+|++|+|++.+|..+.
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHHHH
Confidence 9999999999999988887654
No 119
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.56 E-value=4.5e-08 Score=98.30 Aligned_cols=95 Identities=29% Similarity=0.436 Sum_probs=79.2
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
..+++|+.|++++|++++..+ +..+++|+.|++++|++++. +.+..+++|+.|+|++|++++ + ..+..+++|+.|
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L 292 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSL 292 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEE
Confidence 345689999999999985444 89999999999999999864 678899999999999999985 4 458899999999
Q ss_pred EccCCcCcccCCccCC-CCCC
Q 042915 479 FLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~~~-~~~L 498 (501)
+|++|++++..|..+. +++|
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTC
T ss_pred ECcCCcCCCcChhHhhccccC
Confidence 9999999876666555 5544
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.55 E-value=1e-07 Score=102.88 Aligned_cols=88 Identities=20% Similarity=0.207 Sum_probs=71.9
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCC----
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPIL---- 475 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L---- 475 (501)
.+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|++.++ +. ++|+.|+|++|+|+ .+|. +.. +|
T Consensus 138 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 138 LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE 206 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence 35689999999999996 665 67899999999999998444 65 89999999999999 7887 654 77
Q ss_pred ---CEEEccCCcCcccCCccCC-CCCCc
Q 042915 476 ---REIFLQNNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 476 ---~~L~Ls~N~l~g~lP~~~~-~~~L~ 499 (501)
+.|+|++|+|+ .||..++ +++|+
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTC 233 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTE
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCC
Confidence 99999999999 7999877 65553
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.55 E-value=6.4e-08 Score=101.66 Aligned_cols=87 Identities=24% Similarity=0.324 Sum_probs=76.6
Q ss_pred CCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 399 SKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
..+++|+.|+|++|++.+..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++. ..+..+++|+.|
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence 456789999999999986544 8899999999999999998776 78999999999999999864 478999999999
Q ss_pred EccCCcCcccCC
Q 042915 479 FLQNNNLDGQIP 490 (501)
Q Consensus 479 ~Ls~N~l~g~lP 490 (501)
++++|++++..|
T Consensus 359 ~l~~n~l~~~~~ 370 (466)
T 1o6v_A 359 SAGHNQISDLTP 370 (466)
T ss_dssp ECCSSCCCBCGG
T ss_pred eCCCCccCccch
Confidence 999999997655
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.52 E-value=1.7e-07 Score=98.63 Aligned_cols=84 Identities=25% Similarity=0.253 Sum_probs=69.4
Q ss_pred CCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCE
Q 042915 398 KSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILRE 477 (501)
Q Consensus 398 ~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~ 477 (501)
...+++|+.|+|++|++++. | ++.+++|++|++++|++++. + ++.+++|+.|+|++|++++ +| ++.+++|++
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 34567888899999998864 3 88889999999999998875 3 8888999999999999986 44 888899999
Q ss_pred EEccCCcCcccCC
Q 042915 478 IFLQNNNLDGQIP 490 (501)
Q Consensus 478 L~Ls~N~l~g~lP 490 (501)
|++++|+|++ +|
T Consensus 132 L~l~~N~l~~-l~ 143 (457)
T 3bz5_A 132 LNCARNTLTE-ID 143 (457)
T ss_dssp EECTTSCCSC-CC
T ss_pred EECCCCccce-ec
Confidence 9999999985 55
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.51 E-value=2.1e-07 Score=97.84 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=36.8
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
+++|+.|++++|++++ +| +..+++|+.|++++|++++. +++.+++|+.|+|++|++++ +| ++.+++|+.|++
T Consensus 169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDC 240 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEEC
T ss_pred CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEe
Confidence 3444455555555443 22 44444455555555554443 24444455555555555543 33 444444555555
Q ss_pred cCCcCc
Q 042915 481 QNNNLD 486 (501)
Q Consensus 481 s~N~l~ 486 (501)
++|+|+
T Consensus 241 ~~N~l~ 246 (457)
T 3bz5_A 241 SVNPLT 246 (457)
T ss_dssp CSSCCS
T ss_pred eCCcCC
Confidence 555544
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.46 E-value=4.1e-07 Score=95.54 Aligned_cols=83 Identities=30% Similarity=0.449 Sum_probs=63.4
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
.+|+.|++++|++++ +| .++++++|+.|++++|++++. |.+ .++|+.|++++|++. .+|. ++.+++|+.|+++
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~--~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL--PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC--cCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence 478899999999986 56 589999999999999998863 332 247778888888777 6664 7777788888888
Q ss_pred CCcCcccCCcc
Q 042915 482 NNNLDGQIPDG 492 (501)
Q Consensus 482 ~N~l~g~lP~~ 492 (501)
+|+++ .+|..
T Consensus 246 ~N~l~-~l~~~ 255 (454)
T 1jl5_A 246 NNLLK-TLPDL 255 (454)
T ss_dssp SSCCS-SCCSC
T ss_pred CCcCC-ccccc
Confidence 88777 46653
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.45 E-value=1e-09 Score=101.82 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=52.7
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCc-cccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIP-QTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P-~~~~~l~~L~~L~ 479 (501)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++ +|.+..+++|+.|+|++|++++..+ ..+..+++|++|+
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 345556666666655 445555555566666666666654 2345556666666676666663221 3566777777777
Q ss_pred ccCCcCcccCCc
Q 042915 480 LQNNNLDGQIPD 491 (501)
Q Consensus 480 Ls~N~l~g~lP~ 491 (501)
+++|++++.+|.
T Consensus 147 l~~N~l~~~~~~ 158 (198)
T 1ds9_A 147 LAGNPLYNDYKE 158 (198)
T ss_dssp ECSCHHHHHHHT
T ss_pred ecCCcccccccc
Confidence 777777655443
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.42 E-value=1.5e-08 Score=101.35 Aligned_cols=82 Identities=15% Similarity=0.325 Sum_probs=35.3
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCC-cCCCC-CcC-CCCCCCCCEEEccCC-cCCcc-CccccCCCC-CC
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGN-KLWGQ-IPE-MKTLTALETLHLENN-QFEGW-IPQTLSQLP-IL 475 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N-~l~~~-~p~-~~~l~~L~~L~Ls~N-~l~g~-~P~~~~~l~-~L 475 (501)
++|+.|+|++|.+++..+..+..+++|++|+|++| .+++. ++. +..+++|+.|+|++| .+++. ++..+..++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 34444444444444444444444444444444444 33321 222 334444444444444 44432 333344444 44
Q ss_pred CEEEccCC
Q 042915 476 REIFLQNN 483 (501)
Q Consensus 476 ~~L~Ls~N 483 (501)
++|+|++|
T Consensus 198 ~~L~l~~~ 205 (336)
T 2ast_B 198 TQLNLSGY 205 (336)
T ss_dssp CEEECCSC
T ss_pred CEEEeCCC
Confidence 44444444
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.41 E-value=4.4e-09 Score=97.53 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=79.0
Q ss_pred cCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCC
Q 042915 397 NKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILR 476 (501)
Q Consensus 397 ~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~ 476 (501)
....+++|+.|+|++|++++ +| .+.++++|+.|+|++|+++..++.+..+++|+.|+|++|++++ +| .++.+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 33456789999999999996 67 8999999999999999998544345677999999999999995 56 688899999
Q ss_pred EEEccCCcCcccCCc--cCC-CCCC
Q 042915 477 EIFLQNNNLDGQIPD--GLW-KPGL 498 (501)
Q Consensus 477 ~L~Ls~N~l~g~lP~--~~~-~~~L 498 (501)
.|+|++|+++ .+|. .+. +++|
T Consensus 119 ~L~l~~N~i~-~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 119 VLYMSNNKIT-NWGEIDKLAALDKL 142 (198)
T ss_dssp EEEESEEECC-CHHHHHHHTTTTTC
T ss_pred EEECCCCcCC-chhHHHHHhcCCCC
Confidence 9999999998 4553 444 4444
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.40 E-value=5.1e-07 Score=94.78 Aligned_cols=96 Identities=25% Similarity=0.396 Sum_probs=60.5
Q ss_pred cceeeecCCCCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccC
Q 042915 391 WTGVTCNKSKHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLS 470 (501)
Q Consensus 391 w~gv~c~~~~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~ 470 (501)
..+++ ....+++|+.|++++|++++ +|..+ .+|++|++++|++++ +|+++++++|+.|++++|++++ +|...
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 33444 34556667777777777764 44432 467777777777766 4567777777777777777764 44422
Q ss_pred CCCCCCEEEccCCcCcccCCccCC-CCCC
Q 042915 471 QLPILREIFLQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 471 ~l~~L~~L~Ls~N~l~g~lP~~~~-~~~L 498 (501)
++|+.|++++|.++ .+|. +. +++|
T Consensus 215 --~~L~~L~l~~n~l~-~lp~-~~~l~~L 239 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELPE-LQNLPFL 239 (454)
T ss_dssp --TTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred --CcccEEECcCCcCC-cccc-cCCCCCC
Confidence 46777777777777 6774 44 4443
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.39 E-value=1.8e-07 Score=102.11 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=70.7
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+..++ .+++|+.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 578899999999985 55 456889999999999986444 6788999999999999 789999999999999999
Q ss_pred CCcCcccCCccC
Q 042915 482 NNNLDGQIPDGL 493 (501)
Q Consensus 482 ~N~l~g~lP~~~ 493 (501)
+|+|++.+|..+
T Consensus 293 ~N~l~~~~~~~l 304 (622)
T 3g06_A 293 GNPLSERTLQAL 304 (622)
T ss_dssp SCCCCHHHHHHH
T ss_pred CCCCCCcCHHHH
Confidence 999987766543
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.35 E-value=7.7e-07 Score=97.11 Aligned_cols=86 Identities=20% Similarity=0.258 Sum_probs=65.6
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCcCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEcc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIPEMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQ 481 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls 481 (501)
++|+.|++++|.++ .+|. .+++|+.|+|++|++++.+ ..+++|+.|+|++|+|+ .+|. .+++|+.|+|+
T Consensus 201 ~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 201 SELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp TTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred chhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 35566666666665 3333 2377899999999998744 55688999999999998 6776 67899999999
Q ss_pred CCcCcccCCccCC-CCCCc
Q 042915 482 NNNLDGQIPDGLW-KPGLN 499 (501)
Q Consensus 482 ~N~l~g~lP~~~~-~~~L~ 499 (501)
+|+|+ .||..+. +++|+
T Consensus 270 ~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTC
T ss_pred CCCCC-cCCHHHhhccccC
Confidence 99999 8998877 66553
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.24 E-value=1.1e-07 Score=97.09 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=77.5
Q ss_pred CCeeEEEecCCCCccc--c---cCcccccCCCCCCeeecCCCcCC----CCCc-CCCCCCCCCEEEccCCcCCcc----C
Q 042915 400 KHTRVVSIDLKGFEIS--G---TLPESIGNLTALKHLRLGGNKLW----GQIP-EMKTLTALETLHLENNQFEGW----I 465 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~--g---~~p~~~~~L~~L~~L~Ls~N~l~----~~~p-~~~~l~~L~~L~Ls~N~l~g~----~ 465 (501)
.+++|+.|+|++|++. | ..+..+..+++|+.|+|++|.++ +.+| .+..+++|+.|+|++|.+.+. +
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 3458899999999997 3 45557889999999999999995 4455 478899999999999999865 5
Q ss_pred cccc--CCCCCCCEEEccCCcCcc----cCCccC
Q 042915 466 PQTL--SQLPILREIFLQNNNLDG----QIPDGL 493 (501)
Q Consensus 466 P~~~--~~l~~L~~L~Ls~N~l~g----~lP~~~ 493 (501)
|..+ +.+++|+.|+|++|.|++ .+|..+
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 6776 448999999999999996 488766
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.24 E-value=4.8e-08 Score=97.54 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=82.8
Q ss_pred CCCeeEEEecCCCC-cccc-cCcccccCCCCCCeeecCCC-cCCCC-CcC-CCCCC-CCCEEEccCC--cCC-ccCcccc
Q 042915 399 SKHTRVVSIDLKGF-EISG-TLPESIGNLTALKHLRLGGN-KLWGQ-IPE-MKTLT-ALETLHLENN--QFE-GWIPQTL 469 (501)
Q Consensus 399 ~~l~~l~~L~Ls~n-~l~g-~~p~~~~~L~~L~~L~Ls~N-~l~~~-~p~-~~~l~-~L~~L~Ls~N--~l~-g~~P~~~ 469 (501)
..+++|+.|+|++| .+++ .++..+.++++|+.|++++| .+++. ++. +..++ +|+.|+|++| .++ +.+|..+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 45789999999999 6876 36777899999999999999 88864 443 68889 9999999999 555 5678888
Q ss_pred CCCCCCCEEEccCCc-CcccCCccCC-CCCCc
Q 042915 470 SQLPILREIFLQNNN-LDGQIPDGLW-KPGLN 499 (501)
Q Consensus 470 ~~l~~L~~L~Ls~N~-l~g~lP~~~~-~~~L~ 499 (501)
..+++|+.|+|++|. +++..+..+. +++|+
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 899999999999999 7766777666 55543
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.23 E-value=1.2e-07 Score=96.80 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=78.4
Q ss_pred CCeeEEEecCCCCccc----ccCcccccCCCCCCeeecCCCcCCCC----Cc-CC--CCCCCCCEEEccCCcCCc----c
Q 042915 400 KHTRVVSIDLKGFEIS----GTLPESIGNLTALKHLRLGGNKLWGQ----IP-EM--KTLTALETLHLENNQFEG----W 464 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~----g~~p~~~~~L~~L~~L~Ls~N~l~~~----~p-~~--~~l~~L~~L~Ls~N~l~g----~ 464 (501)
.+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++. ++ .+ +.+++|+.|+|++|.+.+ .
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 4568999999999996 67888999999999999999999875 33 34 559999999999999997 4
Q ss_pred Ccccc-CCCCCCCEEEccCCcCcccCC
Q 042915 465 IPQTL-SQLPILREIFLQNNNLDGQIP 490 (501)
Q Consensus 465 ~P~~~-~~l~~L~~L~Ls~N~l~g~lP 490 (501)
+|..+ .++++|+.|+|++|++++..|
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88887 668999999999999996543
No 134
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=3.6e-07 Score=89.03 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=41.1
Q ss_pred CeeEEEecCCCCcccc--cCcccccCCCCCCeeecCCCcCCCCCcCCCCCC--CCCEEEccCCcCCccCcc-------cc
Q 042915 401 HTRVVSIDLKGFEISG--TLPESIGNLTALKHLRLGGNKLWGQIPEMKTLT--ALETLHLENNQFEGWIPQ-------TL 469 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~~~~p~~~~l~--~L~~L~Ls~N~l~g~~P~-------~~ 469 (501)
+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. .++..+. +|+.|+|++|.+.+.+|. .+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 3455666666666655 3344455566666666666666554 2222222 566666666666554442 24
Q ss_pred CCCCCCCEEE
Q 042915 470 SQLPILREIF 479 (501)
Q Consensus 470 ~~l~~L~~L~ 479 (501)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 4555555553
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.13 E-value=2.5e-07 Score=93.94 Aligned_cols=87 Identities=20% Similarity=0.271 Sum_probs=67.6
Q ss_pred Ce-eEEEecCCCCcccccCcccccCC-----CCCCeeecCCCcCCCCCcC-----CCCC-CCCCEEEccCCcCCccCccc
Q 042915 401 HT-RVVSIDLKGFEISGTLPESIGNL-----TALKHLRLGGNKLWGQIPE-----MKTL-TALETLHLENNQFEGWIPQT 468 (501)
Q Consensus 401 l~-~l~~L~Ls~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~~~~p~-----~~~l-~~L~~L~Ls~N~l~g~~P~~ 468 (501)
++ +|+.|+|++|++.+..+..+..+ ++|+.|+|++|++++..+. +..+ ++|+.|+|++|++++..+..
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 44 78899999999887777767665 8899999999998877664 3445 78999999999988666554
Q ss_pred c----CC-CCCCCEEEccCCcCcc
Q 042915 469 L----SQ-LPILREIFLQNNNLDG 487 (501)
Q Consensus 469 ~----~~-l~~L~~L~Ls~N~l~g 487 (501)
+ .. .++|++|+|++|.|+.
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHhCCCceeEEEccCCcCCH
Confidence 3 33 3689999999998884
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=8.4e-07 Score=86.41 Aligned_cols=83 Identities=27% Similarity=0.366 Sum_probs=62.9
Q ss_pred ecCCCCccc---ccCcccccCCCCCCeeecCCCcCCCC--CcC-CCCCCCCCEEEccCCcCCccCccccCCCC--CCCEE
Q 042915 407 IDLKGFEIS---GTLPESIGNLTALKHLRLGGNKLWGQ--IPE-MKTLTALETLHLENNQFEGWIPQTLSQLP--ILREI 478 (501)
Q Consensus 407 L~Ls~n~l~---g~~p~~~~~L~~L~~L~Ls~N~l~~~--~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~--~L~~L 478 (501)
++++.|... +.++....++++|+.|+|++|+|++. +|. +..+++|+.|+|++|+|++. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 566677433 22233335789999999999999984 344 47899999999999999964 3344444 99999
Q ss_pred EccCCcCcccCCc
Q 042915 479 FLQNNNLDGQIPD 491 (501)
Q Consensus 479 ~Ls~N~l~g~lP~ 491 (501)
+|++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999987773
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.04 E-value=5.3e-06 Score=82.83 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=80.6
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCC-EEEccCCcCCccCccccCCCCCCCEEE
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALE-TLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~-~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
.+|+.|+|++|+++...+..|.++++|+.|+|++| ++.+.+ .|.++.+|+ .|+|.+ .++..-+.+|.+|++|+.|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 57889999999999777788999999999999998 765555 489999999 999998 77756678999999999999
Q ss_pred ccCCcCcccCCccCC--CCCCc
Q 042915 480 LQNNNLDGQIPDGLW--KPGLN 499 (501)
Q Consensus 480 Ls~N~l~g~lP~~~~--~~~L~ 499 (501)
+++|+++ .|+...+ .++|+
T Consensus 304 l~~n~i~-~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 304 ATGDKIT-TLGDELFGNGVPSK 324 (329)
T ss_dssp ECSSCCC-EECTTTTCTTCCCC
T ss_pred eCCCccC-ccchhhhcCCcchh
Confidence 9999999 7877544 55554
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.00 E-value=8.1e-07 Score=90.09 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=74.2
Q ss_pred CeeEEEecCCCCcccccCc----ccccCCC-CCCeeecCCCcCCCCCc-CCCCC-----CCCCEEEccCCcCCccCcccc
Q 042915 401 HTRVVSIDLKGFEISGTLP----ESIGNLT-ALKHLRLGGNKLWGQIP-EMKTL-----TALETLHLENNQFEGWIPQTL 469 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p----~~~~~L~-~L~~L~Ls~N~l~~~~p-~~~~l-----~~L~~L~Ls~N~l~g~~P~~~ 469 (501)
..+|+.|+|++|.+++..+ ..+..++ +|+.|+|++|++++..+ .+..+ ++|+.|+|++|++++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3459999999999997766 7788898 99999999999998766 34443 999999999999997777654
Q ss_pred C----CC-CCCCEEEccCCcCcccCC
Q 042915 470 S----QL-PILREIFLQNNNLDGQIP 490 (501)
Q Consensus 470 ~----~l-~~L~~L~Ls~N~l~g~lP 490 (501)
. .+ ++|+.|+|++|+|++..+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHH
Confidence 4 44 899999999999985433
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.98 E-value=5.8e-06 Score=83.38 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=59.0
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCC-CcCCCCCcC-CCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGG-NKLWGQIPE-MKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~-N~l~~~~p~-~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
..++.|+|++|+|+. ++.......+|+.|++++ |.++.++++ |.++++|+.|+|++|+|+ .+|.. .+.+|+.|.
T Consensus 154 ~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~ 229 (350)
T 4ay9_X 154 FESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLR 229 (350)
T ss_dssp SSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEE
T ss_pred hhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhh
Confidence 357889999999984 555555667889999875 556555444 688999999999999998 45542 245566666
Q ss_pred ccCC-cCcccCCc
Q 042915 480 LQNN-NLDGQIPD 491 (501)
Q Consensus 480 Ls~N-~l~g~lP~ 491 (501)
+.++ .++ .+|.
T Consensus 230 ~l~~~~l~-~lP~ 241 (350)
T 4ay9_X 230 ARSTYNLK-KLPT 241 (350)
T ss_dssp CTTCTTCC-CCCC
T ss_pred hccCCCcC-cCCC
Confidence 5443 444 7884
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.94 E-value=6.8e-07 Score=93.07 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=70.2
Q ss_pred eeEEEecCCCCccccc----CcccccCCCCCCeeecCCCcCCCCCc-CC----C-CCCCCCEEEccCCcCCc----cCcc
Q 042915 402 TRVVSIDLKGFEISGT----LPESIGNLTALKHLRLGGNKLWGQIP-EM----K-TLTALETLHLENNQFEG----WIPQ 467 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~----~-~l~~L~~L~Ls~N~l~g----~~P~ 467 (501)
++|+.|+|++|.+++. ++..+..+++|+.|+|++|++++..+ .+ . ..++|+.|+|++|++++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 4788899999988865 56667788999999999998876533 22 2 26789999999999986 7888
Q ss_pred ccCCCCCCCEEEccCCcCccc
Q 042915 468 TLSQLPILREIFLQNNNLDGQ 488 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~l~g~ 488 (501)
.+..+++|++|+|++|++++.
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHH
T ss_pred HHHhCCCccEEECCCCCCCHH
Confidence 888899999999999998753
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.73 E-value=1.1e-06 Score=91.57 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=63.0
Q ss_pred CeeEEEecCCCCcccccCcccccC-----CCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCccCccccC
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGN-----LTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEGWIPQTLS 470 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~-----L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~ 470 (501)
+++|+.|+|++|.+....+..+.. .++|+.|+|++|.+++.. + .+..+++|+.|+|++|.+.+..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 456777888888776443333322 257888888888877542 2 246678888888888888765444443
Q ss_pred C-----CCCCCEEEccCCcCcc----cCCccCC
Q 042915 471 Q-----LPILREIFLQNNNLDG----QIPDGLW 494 (501)
Q Consensus 471 ~-----l~~L~~L~Ls~N~l~g----~lP~~~~ 494 (501)
. .++|+.|+|++|++++ .+|..+.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 395 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHH
Confidence 2 6788888888888875 5665544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.63 E-value=6.3e-06 Score=84.19 Aligned_cols=86 Identities=19% Similarity=0.242 Sum_probs=65.4
Q ss_pred eeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCc----cCccc
Q 042915 402 TRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEG----WIPQT 468 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g----~~P~~ 468 (501)
++|+.|+|++|.|+. .++..+..+++|++|+|++|.++..- . .+...++|+.|+|++|.++. .++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 578899999999864 34555677888999999999986431 2 25667789999999999874 24445
Q ss_pred cCCCCCCCEEEccCCcCcc
Q 042915 469 LSQLPILREIFLQNNNLDG 487 (501)
Q Consensus 469 ~~~l~~L~~L~Ls~N~l~g 487 (501)
+...++|+.|+|++|.|+.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 5567889999999998863
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.47 E-value=1.7e-05 Score=80.92 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=65.7
Q ss_pred CeeEEEecCCCCcccccCcccc-----cCCCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCc----cCc
Q 042915 401 HTRVVSIDLKGFEISGTLPESI-----GNLTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEG----WIP 466 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~-----~~L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g----~~P 466 (501)
+.+|+.|+|++|.|+..-...+ ...++|+.|+|++|.++..- + .+..+++|+.|+|++|.+.. .++
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 3478999999999874433333 34678999999999986421 1 24678899999999999874 235
Q ss_pred cccCCCCCCCEEEccCCcCcc
Q 042915 467 QTLSQLPILREIFLQNNNLDG 487 (501)
Q Consensus 467 ~~~~~l~~L~~L~Ls~N~l~g 487 (501)
..+...++|+.|+|++|.|+.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCH
T ss_pred HHHhcCCCcCeEECCCCCCCH
Confidence 667778899999999999873
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.00026 Score=70.44 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=39.2
Q ss_pred CCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCC-EEEccCCcCcccCCc
Q 042915 425 LTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILR-EIFLQNNNLDGQIPD 491 (501)
Q Consensus 425 L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~-~L~Ls~N~l~g~lP~ 491 (501)
+++|+.|+|++|+++.+.+ .|.++++|+.|+|++| +...-+.+|.++.+|+ .|+|.+ .++ .|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~ 290 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEF 290 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEch
Confidence 4566666666666665444 3666666777777666 5544445666666676 666666 555 4554
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=3.5e-05 Score=70.47 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=63.0
Q ss_pred CeeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCC-----CcCCCCCCCCCEEEc--cCCcCCcc----C
Q 042915 401 HTRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQ-----IPEMKTLTALETLHL--ENNQFEGW----I 465 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~-----~p~~~~l~~L~~L~L--s~N~l~g~----~ 465 (501)
.++|++|+|++|.|.. .+...+...+.|++|+|++|.|... ...+...+.|+.|+| ++|.+... +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 4578889999998863 2445566678899999999988753 123566788999999 78888743 3
Q ss_pred ccccCCCCCCCEEEccCCcCc
Q 042915 466 PQTLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 466 P~~~~~l~~L~~L~Ls~N~l~ 486 (501)
.+.+...++|+.|+|++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 345556688999999988874
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.31 E-value=2.2e-05 Score=84.37 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=66.4
Q ss_pred CeeEEEecCCCCc--ccccCccccc-CCCCCCeeecCCCcCCCC-CcC-CCCCCCCCEEEccCCcCCcc-CccccCCCCC
Q 042915 401 HTRVVSIDLKGFE--ISGTLPESIG-NLTALKHLRLGGNKLWGQ-IPE-MKTLTALETLHLENNQFEGW-IPQTLSQLPI 474 (501)
Q Consensus 401 l~~l~~L~Ls~n~--l~g~~p~~~~-~L~~L~~L~Ls~N~l~~~-~p~-~~~l~~L~~L~Ls~N~l~g~-~P~~~~~l~~ 474 (501)
+++|+.|+|+.|. +++.....+. .+++|+.|++++|++++. ++. +..+++|+.|+|++|.+++. ++..+..+++
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 5678888887543 5554444443 488999999999998763 444 47889999999999998754 4445567899
Q ss_pred CCEEEccCCcCccc
Q 042915 475 LREIFLQNNNLDGQ 488 (501)
Q Consensus 475 L~~L~Ls~N~l~g~ 488 (501)
|+.|+|++|+++..
T Consensus 515 L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 515 LRYLWVQGYRASMT 528 (592)
T ss_dssp CCEEEEESCBCCTT
T ss_pred cCeeECcCCcCCHH
Confidence 99999999998743
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.25 E-value=3.7e-05 Score=70.32 Aligned_cols=85 Identities=20% Similarity=0.297 Sum_probs=66.4
Q ss_pred eeEEEecCCCC-cccc----cCcccccCCCCCCeeecCCCcCCCCC----c-CCCCCCCCCEEEccCCcCCcc----Ccc
Q 042915 402 TRVVSIDLKGF-EISG----TLPESIGNLTALKHLRLGGNKLWGQI----P-EMKTLTALETLHLENNQFEGW----IPQ 467 (501)
Q Consensus 402 ~~l~~L~Ls~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~----p-~~~~l~~L~~L~Ls~N~l~g~----~P~ 467 (501)
++|++|+|++| .|.. .+...+...++|++|+|++|++...- . .+...+.|+.|+|++|.+... +.+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 57889999999 8863 24556777889999999999986421 1 245568899999999999753 456
Q ss_pred ccCCCCCCCEEEc--cCCcCc
Q 042915 468 TLSQLPILREIFL--QNNNLD 486 (501)
Q Consensus 468 ~~~~l~~L~~L~L--s~N~l~ 486 (501)
.+...++|++|+| ++|.|.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCC
T ss_pred HHHhCCCceEEEecCCCCCCC
Confidence 7778889999999 889886
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.97 E-value=0.00014 Score=65.92 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=63.1
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCc-CCCC-CcCCCCC----CCCCEEEccCCc-CCccCccccCCCCC
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNK-LWGQ-IPEMKTL----TALETLHLENNQ-FEGWIPQTLSQLPI 474 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~~~-~p~~~~l----~~L~~L~Ls~N~-l~g~~P~~~~~l~~ 474 (501)
.+|++|+|+++.++..--..+.++++|+.|+|++|. ++.. +..+..+ ++|+.|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999875434557899999999999996 5432 2234554 479999999985 76433345778999
Q ss_pred CCEEEccCCc
Q 042915 475 LREIFLQNNN 484 (501)
Q Consensus 475 L~~L~Ls~N~ 484 (501)
|+.|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999875
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.72 E-value=0.00037 Score=74.68 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=48.4
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcCC---CCC-cCCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLW---GQI-PEMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~---~~~-p~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
+|+.|+|++|.+.+ ++..+.++++|+.|++++.... +.. ..+..+++|+.|+++++.. +.+|..+..+++|++|
T Consensus 221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKL 298 (592)
T ss_dssp TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEE
T ss_pred CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEE
Confidence 44444555444443 3344444455555555432111 011 1245666777777776533 3677778888899999
Q ss_pred EccCCcCcccC
Q 042915 479 FLQNNNLDGQI 489 (501)
Q Consensus 479 ~Ls~N~l~g~l 489 (501)
+|++|.+++..
T Consensus 299 ~Ls~~~l~~~~ 309 (592)
T 3ogk_B 299 DLLYALLETED 309 (592)
T ss_dssp EETTCCCCHHH
T ss_pred ecCCCcCCHHH
Confidence 99999876433
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.63 E-value=0.00014 Score=77.98 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=60.9
Q ss_pred CeeEEEecCCCCcccccCcccccC-CCCCCeeecCCCcCCCCCc-CC-CCCCCCCEEEccCCcCCccCcc-ccCCCCCCC
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGN-LTALKHLRLGGNKLWGQIP-EM-KTLTALETLHLENNQFEGWIPQ-TLSQLPILR 476 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~-L~~L~~L~Ls~N~l~~~~p-~~-~~l~~L~~L~Ls~N~l~g~~P~-~~~~l~~L~ 476 (501)
+++|+.|+|++ .++......+.. +++|+.|+|++|.+++... .+ ..+++|+.|+|++|.+++..+. .+..+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 45788888876 666554455554 7889999999888865433 33 5688899999999988644333 344578899
Q ss_pred EEEccCCcCc
Q 042915 477 EIFLQNNNLD 486 (501)
Q Consensus 477 ~L~Ls~N~l~ 486 (501)
.|+|++|+++
T Consensus 510 ~L~l~~~~~~ 519 (594)
T 2p1m_B 510 SLWMSSCSVS 519 (594)
T ss_dssp EEEEESSCCB
T ss_pred EEeeeCCCCC
Confidence 9999988875
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.52 E-value=0.0045 Score=53.03 Aligned_cols=55 Identities=29% Similarity=0.411 Sum_probs=41.5
Q ss_pred EecCCCCccc-ccCcccccCCCCCCeeecCCCcCCCCCcC-CCCCCCCCEEEccCCcCC
Q 042915 406 SIDLKGFEIS-GTLPESIGNLTALKHLRLGGNKLWGQIPE-MKTLTALETLHLENNQFE 462 (501)
Q Consensus 406 ~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~~~~p~-~~~l~~L~~L~Ls~N~l~ 462 (501)
.++-++++|+ ..+|..+. ++|+.|+|++|+|+.+.+. |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777775 34554332 3689999999999877774 688999999999999774
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.42 E-value=0.00032 Score=75.13 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=57.7
Q ss_pred CeeEEEecCCCC-ccccc-CcccccCCCCCCeeecCCCcCCCCCc----CC-CCCCCCCEEEccCCc--CCc-cCccccC
Q 042915 401 HTRVVSIDLKGF-EISGT-LPESIGNLTALKHLRLGGNKLWGQIP----EM-KTLTALETLHLENNQ--FEG-WIPQTLS 470 (501)
Q Consensus 401 l~~l~~L~Ls~n-~l~g~-~p~~~~~L~~L~~L~Ls~N~l~~~~p----~~-~~l~~L~~L~Ls~N~--l~g-~~P~~~~ 470 (501)
+++|+.|+|++| .++.. ++..+.++++|++|+|++|.+++..+ .+ ..+++|+.|+|++|. +.. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 457888899888 45432 44555678899999999998776443 22 467889999999886 221 1222234
Q ss_pred CCCCCCEEEccCC
Q 042915 471 QLPILREIFLQNN 483 (501)
Q Consensus 471 ~l~~L~~L~Ls~N 483 (501)
.+++|+.|+|++|
T Consensus 209 ~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 209 RCPNLKSLKLNRA 221 (594)
T ss_dssp HCTTCCEEECCTT
T ss_pred hCCCCcEEecCCC
Confidence 5689999999988
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.21 E-value=0.0073 Score=61.97 Aligned_cols=91 Identities=9% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCeeEEEecCCCCccc-----ccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCC
Q 042915 400 KHTRVVSIDLKGFEIS-----GTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLP 473 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~ 473 (501)
++.+|+.|.+.+|.+. ..-+..|.++++|+.++|.+ .++.+.. .|.++++|+.|.|..| ++..-+.+|.++
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~- 345 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT- 345 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-
Confidence 3456777777776654 35567788899999999984 4665444 4788899999999655 664556688888
Q ss_pred CCCEEEccCCcCcccCCccCC
Q 042915 474 ILREIFLQNNNLDGQIPDGLW 494 (501)
Q Consensus 474 ~L~~L~Ls~N~l~g~lP~~~~ 494 (501)
+|+.|.+++|.+. .++...+
T Consensus 346 ~L~~l~l~~n~~~-~l~~~~F 365 (401)
T 4fdw_A 346 GIKEVKVEGTTPP-QVFEKVW 365 (401)
T ss_dssp CCCEEEECCSSCC-BCCCSSC
T ss_pred CCCEEEEcCCCCc-ccccccc
Confidence 8999999998887 5665433
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.81 E-value=0.0014 Score=66.51 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=25.9
Q ss_pred CCCCCeeecCCCcCCCCCc-C---CCCCCCCCEEEccCCcCCcc----CccccCCCCCCCEEEccCCcCc
Q 042915 425 LTALKHLRLGGNKLWGQIP-E---MKTLTALETLHLENNQFEGW----IPQTLSQLPILREIFLQNNNLD 486 (501)
Q Consensus 425 L~~L~~L~Ls~N~l~~~~p-~---~~~l~~L~~L~Ls~N~l~g~----~P~~~~~l~~L~~L~Ls~N~l~ 486 (501)
+++|+.|+|.+|.+....+ . ...+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4445555555444432111 0 12344455555555544431 2222233444555555555443
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.79 E-value=0.014 Score=49.95 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=21.1
Q ss_pred eEEEecCCCCcccccCcccccCCCCCCeeecCCCcC
Q 042915 403 RVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKL 438 (501)
Q Consensus 403 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l 438 (501)
+++.|+|++|+|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455666666666644445555566666666666654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.50 E-value=0.0024 Score=64.77 Aligned_cols=87 Identities=16% Similarity=0.199 Sum_probs=60.3
Q ss_pred CeeEEEecCCCCcccccCccccc--CCCCCCeeecCC--CcCCCC--C----cCC--CCCCCCCEEEccCCcCCccCccc
Q 042915 401 HTRVVSIDLKGFEISGTLPESIG--NLTALKHLRLGG--NKLWGQ--I----PEM--KTLTALETLHLENNQFEGWIPQT 468 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~--~L~~L~~L~Ls~--N~l~~~--~----p~~--~~l~~L~~L~Ls~N~l~g~~P~~ 468 (501)
+++|+.|+|..+.+....-..+. .+++|+.|+|+. |...+. + +.+ ..+++|+.|+|++|.+....+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45788888888887643333343 789999999864 222221 1 122 35799999999999987544433
Q ss_pred c---CCCCCCCEEEccCCcCcc
Q 042915 469 L---SQLPILREIFLQNNNLDG 487 (501)
Q Consensus 469 ~---~~l~~L~~L~Ls~N~l~g 487 (501)
+ ..+++|+.|+|+.|.|..
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBH
T ss_pred HHhCccCCCCCEEECCCCCCCh
Confidence 3 357899999999999875
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.12 E-value=0.04 Score=56.38 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=53.5
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEE
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREI 478 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L 478 (501)
++.+|+.|+|++|+++......|. ..+|+.+.|..+ ++.+.. .|.++++|+.++|..| ++..-..+|.+ .+|+.+
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 455677777777777644444444 467777777644 443333 3677777777777764 44333445555 677777
Q ss_pred EccCCcCcccCCccCC
Q 042915 479 FLQNNNLDGQIPDGLW 494 (501)
Q Consensus 479 ~Ls~N~l~g~lP~~~~ 494 (501)
.| .|.++ .|+...+
T Consensus 254 ~l-p~~i~-~I~~~aF 267 (401)
T 4fdw_A 254 KL-PNGVT-NIASRAF 267 (401)
T ss_dssp EE-ETTCC-EECTTTT
T ss_pred Ee-CCCcc-EEChhHh
Confidence 77 44555 5655433
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.29 E-value=0.011 Score=54.43 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=43.1
Q ss_pred eeEEEecCCCCcccc----cCcccccCCCCCCeeecCCCcCCCCCc-----CCCCCCCCCEEEccCCc---CCc----cC
Q 042915 402 TRVVSIDLKGFEISG----TLPESIGNLTALKHLRLGGNKLWGQIP-----EMKTLTALETLHLENNQ---FEG----WI 465 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-----~~~~l~~L~~L~Ls~N~---l~g----~~ 465 (501)
+.|+.|+|++|+|.. .+...+..=+.|+.|+|++|.|...-- .+..-+.|+.|+|++|. +.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 456666777766652 223334444566777777776653211 13334456677766542 221 12
Q ss_pred ccccCCCCCCCEEEccCCcC
Q 042915 466 PQTLSQLPILREIFLQNNNL 485 (501)
Q Consensus 466 P~~~~~l~~L~~L~Ls~N~l 485 (501)
-+.+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 23344445666666665543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=92.80 E-value=0.032 Score=50.34 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=45.9
Q ss_pred CCCCeeecCCCcCCCC-CcCCCCCCCCCEEEccCCc-CCccCccccCCC----CCCCEEEccCCc-Cc
Q 042915 426 TALKHLRLGGNKLWGQ-IPEMKTLTALETLHLENNQ-FEGWIPQTLSQL----PILREIFLQNNN-LD 486 (501)
Q Consensus 426 ~~L~~L~Ls~N~l~~~-~p~~~~l~~L~~L~Ls~N~-l~g~~P~~~~~l----~~L~~L~Ls~N~-l~ 486 (501)
-.|+.|||+++.++.. +..+.++++|+.|+|++|. ++..--..+..+ ++|++|+|+++. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 4799999999997643 3457899999999999996 654323345554 379999999975 54
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.18 E-value=0.3 Score=48.78 Aligned_cols=87 Identities=9% Similarity=0.074 Sum_probs=60.9
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
..+++.+.+..+ ++..-...|.++++|+.+.+.++.++.+.+ .|.++.+|+.+.|..+ ++..-..+|.++.+|+.+.
T Consensus 262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence 345666666543 544445678888999999998888876555 4788999999999755 5534455788889998888
Q ss_pred ccCCcCcccCCc
Q 042915 480 LQNNNLDGQIPD 491 (501)
Q Consensus 480 Ls~N~l~g~lP~ 491 (501)
+..+ ++ .|..
T Consensus 340 ip~~-v~-~I~~ 349 (379)
T 4h09_A 340 YPKS-IT-LIES 349 (379)
T ss_dssp CCTT-CC-EECT
T ss_pred ECCc-cC-EEch
Confidence 8654 44 4443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.69 E-value=0.17 Score=51.09 Aligned_cols=93 Identities=12% Similarity=0.057 Sum_probs=65.0
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
..+|+.+.+..+ ++..-...|.++++|+.++|..+ ++.+-. .|.++.+|+.+.|..| ++..-..+|.++.+|+.+.
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 346667777654 55455667889999999999754 554433 4889999999999877 6644456899999999999
Q ss_pred ccCCcCcccCCccCC-CCCC
Q 042915 480 LQNNNLDGQIPDGLW-KPGL 498 (501)
Q Consensus 480 Ls~N~l~g~lP~~~~-~~~L 498 (501)
+..+ ++ .+...|. .++|
T Consensus 373 lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 373 LPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp EEGG-GG-GGGGGBCTTCEE
T ss_pred ECCC-CE-EhhheecCCCCC
Confidence 9754 33 3444444 4444
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.35 E-value=0.39 Score=48.45 Aligned_cols=81 Identities=11% Similarity=0.128 Sum_probs=54.4
Q ss_pred eeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEc
Q 042915 402 TRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFL 480 (501)
Q Consensus 402 ~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~L 480 (501)
..|+.+.+. +.++..-...|.++.+|+.++|..+ ++.+-. .|.++.+|+.+.|..+ ++..-..+|.++++|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 455666664 3455455566788888888888754 443333 3788888888888654 55334557888888888888
Q ss_pred cCCcC
Q 042915 481 QNNNL 485 (501)
Q Consensus 481 s~N~l 485 (501)
.+|..
T Consensus 365 ~~~~~ 369 (394)
T 4gt6_A 365 SGSRS 369 (394)
T ss_dssp SSCHH
T ss_pred CCcee
Confidence 87654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.12 E-value=0.29 Score=48.88 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=45.6
Q ss_pred CCeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCC
Q 042915 400 KHTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLP 473 (501)
Q Consensus 400 ~l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~ 473 (501)
.+.+|+.+.+.++.++..-...|.++.+|+.+.|..+ ++.+-. .|.++.+|+.+.|..+ ++..-..+|.++.
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 3456777777777777555667788888888888654 443333 3777788887777544 4422334555543
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.01 E-value=0.58 Score=47.10 Aligned_cols=93 Identities=12% Similarity=0.211 Sum_probs=66.6
Q ss_pred CeeEEEecCCCCcccccCcccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEE
Q 042915 401 HTRVVSIDLKGFEISGTLPESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIF 479 (501)
Q Consensus 401 l~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~ 479 (501)
...|+.+.+..+... .-...|.+++.|+.+.+. +.++.... .|.++.+|+.++|..+ ++..-..+|.++.+|+.+.
T Consensus 264 c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 264 CAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp CSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 346667777655443 455678899999999996 44554444 4899999999999865 5534456899999999999
Q ss_pred ccCCcCcccCCccCC--CCCC
Q 042915 480 LQNNNLDGQIPDGLW--KPGL 498 (501)
Q Consensus 480 Ls~N~l~g~lP~~~~--~~~L 498 (501)
|..+ ++ .|....+ ..+|
T Consensus 341 ip~s-v~-~I~~~aF~~C~~L 359 (394)
T 4gt6_A 341 IPSS-VT-KIPESAFSNCTAL 359 (394)
T ss_dssp ECTT-CC-BCCGGGGTTCTTC
T ss_pred ECcc-cC-EEhHhHhhCCCCC
Confidence 9755 66 6776433 4554
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.43 E-value=0.061 Score=49.41 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=60.3
Q ss_pred eeEEEecCCCC-cccc----cCcccccCCCCCCeeecCCCcCCCCCc-C----CCCCCCCCEEEccCCcCCc----cCcc
Q 042915 402 TRVVSIDLKGF-EISG----TLPESIGNLTALKHLRLGGNKLWGQIP-E----MKTLTALETLHLENNQFEG----WIPQ 467 (501)
Q Consensus 402 ~~l~~L~Ls~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~~~~p-~----~~~l~~L~~L~Ls~N~l~g----~~P~ 467 (501)
+.|++|+|++| +|.. .+-+.+..-+.|+.|+|++|++...-- . +..=+.|+.|+|+.|.|.. .+-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 36788999986 7642 244556777899999999999963211 1 3445789999999999974 2334
Q ss_pred ccCCCCCCCEEEccCCc
Q 042915 468 TLSQLPILREIFLQNNN 484 (501)
Q Consensus 468 ~~~~l~~L~~L~Ls~N~ 484 (501)
.+..-+.|++|+|++|.
T Consensus 121 aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQR 137 (197)
T ss_dssp HTTTTCCCSEEECCCCS
T ss_pred HHhhCCceeEEECCCCc
Confidence 56666789999998653
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.08 E-value=1.9 Score=43.22 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=56.1
Q ss_pred cccccCCCCCCeeecCCCcCCCCCc-CCCCCCCCCEEEccCCcCCccCccccCCCCCCCEEEccCCcCcccCCccCC--C
Q 042915 419 PESIGNLTALKHLRLGGNKLWGQIP-EMKTLTALETLHLENNQFEGWIPQTLSQLPILREIFLQNNNLDGQIPDGLW--K 495 (501)
Q Consensus 419 p~~~~~L~~L~~L~Ls~N~l~~~~p-~~~~l~~L~~L~Ls~N~l~g~~P~~~~~l~~L~~L~Ls~N~l~g~lP~~~~--~ 495 (501)
...|..+.+|+.+.+..+ ++.+-. .|.++.+|+.++|..+ ++..-..+|.++.+|+.+.+..| ++ .|+...+ .
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C 365 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGC 365 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTC
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCC
Confidence 345778899999999765 554433 4889999999999754 66444668999999999999877 66 6765433 4
Q ss_pred CCC
Q 042915 496 PGL 498 (501)
Q Consensus 496 ~~L 498 (501)
.+|
T Consensus 366 ~~L 368 (394)
T 4fs7_A 366 INL 368 (394)
T ss_dssp TTC
T ss_pred CCC
Confidence 444
No 167
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=57.36 E-value=87 Score=26.40 Aligned_cols=92 Identities=10% Similarity=0.159 Sum_probs=55.6
Q ss_pred CCceeEEeeccCCCeEEEEEEeeccCCCCCCCCCceEEEEcCeEEEEEEccccccCCcceEEE--EEEEecCCceEEEEe
Q 042915 81 ARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYE--VVVAAVGNSLSVCLA 158 (501)
Q Consensus 81 ~~~~cY~~~~~~~~~ylvR~~F~~~~yd~~~~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E--~i~~~~~~~l~vcf~ 158 (501)
+..-.|++.+.+.|.|.|++.+.-+..+ + -..+|++++.....+.+.... +...+.+ +-+....+.=.|.|.
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~~--~--r~~~l~VNG~~~~~v~~p~Tg--~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGTS--A--RRATVVVNDSQIKTLDFPTNS--NWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSSS--C--CCEEEEETTEEEEEECCCCCS--CTTSCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCCC--C--eEEEEEECCeEeeEEEecCCC--CCCeeEEEEEEEEECCCceEEEEE
Confidence 3445777777788999887777533321 2 258999998766666664321 1111333 333445555566666
Q ss_pred ecCCCCCCceeeeEEeeecCC
Q 042915 159 RNNDTTSHPFISAIELSKLDD 179 (501)
Q Consensus 159 ~~~~~~~~pFIn~iEl~~l~~ 179 (501)
..+.. +.|-|..|+|.+.+.
T Consensus 112 ~~~~~-g~~niD~i~v~~~~~ 131 (145)
T 2w3j_A 112 AETAD-GLANIDSIRVTGNGI 131 (145)
T ss_dssp ECSTT-CCCEEEEEEECSTTE
T ss_pred EecCc-CCEEEEEEEEEcCCC
Confidence 54321 379999999976543
No 168
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=53.70 E-value=1.6e+02 Score=28.91 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=48.3
Q ss_pred EEeecc-CCCeEEEEEEeeccCCCCCCCCCceEEEEcCeEEEEEEccccccCCcceEEEEEEEecCCceEEEEeecCCCC
Q 042915 86 YVFNVT-QGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLARNNDTT 164 (501)
Q Consensus 86 Y~~~~~-~~~~ylvR~~F~~~~yd~~~~~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~~~~ 164 (501)
++|.+. +.|.|.|.+.+--+ +.=.|...+.+ .+. . ..+....+++.+++.++.+.+.+...-.+
T Consensus 78 ~~f~v~~~~g~Y~v~v~~g~~--------~~~~v~~e~~~--~~~-~---~~g~~~~~~~~v~~~~g~~~l~~~~~~~g- 142 (375)
T 2o14_A 78 NTFNVDLPNGLYEVKVTLGNT--------ARASVAAEGVF--QVI-N---MTGDGAEDTFQIPVTDGQLNLLVTEGKAG- 142 (375)
T ss_dssp CCEEEECCSEEEEEEEEESSC--------SEEEEEETTEE--EEE-E---EESTTCEEEEEEEECSSEEEEEEEESSTT-
T ss_pred eEEEEEcCCCceEEEEEecCC--------cceEEEEcceE--EEE-e---cCCCcEEEEEEEEeeCCeEEEeeeeccCC-
Confidence 445442 57899888887433 13334444431 122 1 11234567788888899999987743222
Q ss_pred CCceeeeEEeeecCC
Q 042915 165 SHPFISAIELSKLDD 179 (501)
Q Consensus 165 ~~pFIn~iEl~~l~~ 179 (501)
..+++++||+.+.+.
T Consensus 143 ~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 143 TAFTLSALKIKKLSD 157 (375)
T ss_dssp SCCEEEEEEEEEEES
T ss_pred CCcccceEEEeccCC
Confidence 258999999998654
No 169
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=49.07 E-value=1.2e+02 Score=25.38 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=55.0
Q ss_pred CCceeEEeeccCCCeEEEEEEeeccCCCCCCCCCceEEEEcCeE-EEEEEccccccCCcceEEEEEEEecCCceEEEEee
Q 042915 81 ARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTK-WSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCLAR 159 (501)
Q Consensus 81 ~~~~cY~~~~~~~~~ylvR~~F~~~~yd~~~~~~~F~v~~~~~~-~~~v~~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~ 159 (501)
+..-.|++.+.+.|.|-|++.+.-+... + -..+|++++.. -..+.+.....-........-+....+.=.|.|..
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~~--~--~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~ 114 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTTA--N--RPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA 114 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSSS--C--CCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCCC--C--eEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence 4456788888788999888877654321 2 25899998865 24566533211011112222344555556666664
Q ss_pred cCCCCCCceeeeEEeeecC
Q 042915 160 NNDTTSHPFISAIELSKLD 178 (501)
Q Consensus 160 ~~~~~~~pFIn~iEl~~l~ 178 (501)
.+. .+.|-|..|+|.+.+
T Consensus 115 ~~~-~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 115 IAS-DGGPNVDYLKVFSAN 132 (144)
T ss_dssp CST-TCCCEEEEEEEEECT
T ss_pred eCC-CCCEEEeEEEEEeCC
Confidence 322 126999999998754
No 170
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=42.71 E-value=1.6e+02 Score=25.14 Aligned_cols=92 Identities=10% Similarity=-0.014 Sum_probs=50.6
Q ss_pred eEE-eeccCCCeEEEEEEeeccCCC-----CCCC-CCceEEEEcCeEEEEEEccccccCCcceEEEEEEEecCCceEEEE
Q 042915 85 CYV-FNVTQGDKYLVRTTYYYGGFD-----GGTQ-PPVFDQIIGGTKWSIVDTAEDFANGLSSYYEVVVAAVGNSLSVCL 157 (501)
Q Consensus 85 cY~-~~~~~~~~ylvR~~F~~~~yd-----~~~~-~~~F~v~~~~~~~~~v~~~~~~~~~~~~~~E~i~~~~~~~l~vcf 157 (501)
.++ +.+.+.|.|.|++.|.-+... +.+. .-..+|++++..-..+.+.....-+..-...+.+....+.=.|.|
T Consensus 50 tf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp~Tg~W~~~~~~tv~V~L~aG~NtI~~ 129 (156)
T 2wz8_A 50 QFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFFNTRGWNTYRTDIIDVYLNAGNNTIRF 129 (156)
T ss_dssp EEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEECCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred EEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeCCCCCCCcceEEEEEEEECCCceEEEE
Confidence 444 556678999988888655321 0011 124889997654334555322110111122334455666777888
Q ss_pred eec-CCCCCCceeeeEEeeec
Q 042915 158 ARN-NDTTSHPFISAIELSKL 177 (501)
Q Consensus 158 ~~~-~~~~~~pFIn~iEl~~l 177 (501)
... ..+ ..|-|-.|+|.++
T Consensus 130 ~~~~~~~-~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 130 YNGTSGS-YAPNIDKIAIAAL 149 (156)
T ss_dssp ECCSTTC-BCCEEEEEEEEC-
T ss_pred EecCCCC-CCcEEEEEEEecc
Confidence 865 222 2588888888654
No 171
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=30.72 E-value=2.3e+02 Score=23.44 Aligned_cols=88 Identities=15% Similarity=0.176 Sum_probs=51.2
Q ss_pred CCceeEEeeccCCCeEEEEEEeeccCCCCCCCCCceEEEEcCeEE--EEEEccccccCCcceEE--EEEEEecCCceEEE
Q 042915 81 ARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKW--SIVDTAEDFANGLSSYY--EVVVAAVGNSLSVC 156 (501)
Q Consensus 81 ~~~~cY~~~~~~~~~ylvR~~F~~~~yd~~~~~~~F~v~~~~~~~--~~v~~~~~~~~~~~~~~--E~i~~~~~~~l~vc 156 (501)
+..-.|++.+.+.|.|.|++.+.-+.- .+ -..+|++++..- ..+.+.... +...+. +.-+....+.=.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~~--~~--r~~~l~VNG~~~g~~~v~~p~Tg--~W~~w~t~~~~v~L~aG~ntI~ 111 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGGT--AN--RNGSLVINGGSNGNYTVSLPTTG--AWTTWQTATIDVDLVQGNNIVQ 111 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS--SC--CCEEEEETTTTTCEEEECCCCCS--STTCCEEEEEEEEECSEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC--CC--ceEEEEECCEEcceeEEEecCCC--CCCccEEEEEEEEECCCceEEE
Confidence 334567777777899988877754432 12 258888876543 456553321 111223 33334455555666
Q ss_pred EeecC-CCCCCceeeeEEeee
Q 042915 157 LARNN-DTTSHPFISAIELSK 176 (501)
Q Consensus 157 f~~~~-~~~~~pFIn~iEl~~ 176 (501)
|.... .+ .|-|..|+|.+
T Consensus 112 l~~~~~~g--~~niD~i~v~~ 130 (139)
T 2w87_A 112 LSATTAEG--LPNIDSLSVVG 130 (139)
T ss_dssp EEESSTTC--CCEEEEEEEES
T ss_pred EEEcCCCC--CEEEEEEEEec
Confidence 66543 33 79999999875
No 172
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=28.66 E-value=2.3e+02 Score=22.78 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=49.6
Q ss_pred CCceeEEeeccCCCeEEEEEEeeccCCCCCCCCCceEEEEcCeEEE-EEEccccccCCcceEEE--EEEEecCCceEEEE
Q 042915 81 ARKYCYVFNVTQGDKYLVRTTYYYGGFDGGTQPPVFDQIIGGTKWS-IVDTAEDFANGLSSYYE--VVVAAVGNSLSVCL 157 (501)
Q Consensus 81 ~~~~cY~~~~~~~~~ylvR~~F~~~~yd~~~~~~~F~v~~~~~~~~-~v~~~~~~~~~~~~~~E--~i~~~~~~~l~vcf 157 (501)
+..-.|++.+.+.|.|-|++.+.-+.. .. ..++|++++.... .+.+.... +...+.+ +.+....+.=.|.|
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~rya~~~~--~~--~~~~l~VnG~~~~~~v~~p~tg--~W~~w~~~~~~v~L~aG~ntI~l 111 (127)
T 2vzp_A 38 GSSVEWTVTVPSAGTYDVVVRYANGTT--TS--RPLDFSVNGSISASGVAFGSTG--TWPAWTTKTVRVTLAAGVNKIKA 111 (127)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS--SC--CCEEEEETTEEEEEEECCCCCS--STTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEEcCCCCEEEEEEEEEcCCC--CC--eEEEEEECCEEeeeEEEecCCC--CCCceEEEEEEEEECCCceEEEE
Confidence 455688888888899998888865532 12 3589999886543 35553221 1112233 33344555555666
Q ss_pred eecC-CCCCCceeeeEEe
Q 042915 158 ARNN-DTTSHPFISAIEL 174 (501)
Q Consensus 158 ~~~~-~~~~~pFIn~iEl 174 (501)
.... .+ .|-|..|+|
T Consensus 112 ~~~~~~~--~~niD~i~v 127 (127)
T 2vzp_A 112 VATTANG--GPNVDKITL 127 (127)
T ss_dssp EECSTTC--CCEEEEEEC
T ss_pred EEeCCCC--CeEEEEEEC
Confidence 5432 23 577777764
No 173
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=25.44 E-value=38 Score=28.72 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=28.7
Q ss_pred EEecCCCCCCCccEEEEEEeeecCCCCCCCceEEEEEECCccc
Q 042915 260 QIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTF 302 (501)
Q Consensus 260 ~ltw~~~~~~~~~y~v~lhF~e~~~~~~~~~R~F~I~in~~~~ 302 (501)
-++|...++..-.|-+.+.++.- ....|.++|+|||...
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang----~~~~r~~~l~VNG~~~ 78 (145)
T 2w3j_A 40 SIVWSLSAASAKTYTAQIRFGNG----GTSARRATVVVNDSQI 78 (145)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC----SSSCCCEEEEETTEEE
T ss_pred EEEEEEECCCCeEEEEEEEEECC----CCCCeEEEEEECCeEe
Confidence 35666666677889999999841 1235999999999764
No 174
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=23.71 E-value=56 Score=28.13 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=29.2
Q ss_pred EEecC-CCCCCCccEEEEEEeeecCCC------CCCCceEEEEEECCcc
Q 042915 260 QIQWP-PGPLPNSRYYIALYFQENRAP------SPESWRVFNVSVNGNT 301 (501)
Q Consensus 260 ~ltw~-~~~~~~~~y~v~lhF~e~~~~------~~~~~R~F~I~in~~~ 301 (501)
.++|. ..++..-.|.|.++|+.-... .....|...|+|||..
T Consensus 48 ~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~ 96 (156)
T 2wz8_A 48 YLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGP 96 (156)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCC
T ss_pred EEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCce
Confidence 35665 556667899999999873210 0113699999999976
No 175
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=21.59 E-value=49 Score=27.01 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=29.1
Q ss_pred EEecCCCCCCCccEEEEEEeeecCCCCCCCceEEEEEECCccc
Q 042915 260 QIQWPPGPLPNSRYYIALYFQENRAPSPESWRVFNVSVNGNTF 302 (501)
Q Consensus 260 ~ltw~~~~~~~~~y~v~lhF~e~~~~~~~~~R~F~I~in~~~~ 302 (501)
-++|...++..-.|-+.++++--. ...|.++|+|||...
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~----~~~~~~~l~VnG~~~ 78 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT----TTSRPLDFSVNGSIS 78 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC----CCCeEEEEEECCEEe
Confidence 366666666678899999998632 235889999999764
Done!