BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042916
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 22 AQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPL 80
A Y VG + GW N ++WP K F+ GD+L+F+Y+ S ++V V + F TCN
Sbjct: 1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA 58
Query: 81 KTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVH 117
K Y++G + L G YF+ +C GMK+ V+
Sbjct: 59 KVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 26 VGDTSGWD--ISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPLKT 82
VGD++GW + + W F VGD L+F+Y+ ++V +V ++ F +CN S+P +
Sbjct: 7 VGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAAS 66
Query: 83 YSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHV 118
Y++G ++ L PG YF+ G +C G K+ + V
Sbjct: 67 YTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 24 YFVGDTSGWDISSN---LDTWPDDKVFKVGDVLVFSYSA-SNSVTEV-TKQNFDTCNISN 78
+ VGD +GW + S+ W K F+VGD L F++ A +++V E+ TKQ+FD CN N
Sbjct: 6 HIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVN 65
Query: 79 PLKTYSNGNTTVT-LSAPGDRYFVSGNRLYCFGGMKLHVHVPA 120
+ + L G YFV +C G KL ++V A
Sbjct: 66 SDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVA 108
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 40 TWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDR 98
TW K F+VGD L F ++A + V VTK FD C NP+ + + L+ G +
Sbjct: 23 TWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQ 82
Query: 99 YFVSGNRLYCFGGMKLHVHV 118
Y++ +C G KL ++V
Sbjct: 83 YYICTVGDHCRVGQKLSINV 102
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 31 GWDISSNLDTWPDDKVFKVGDVLVFSY-SASNSVTEVTKQNFDTCNISNPLKTYSNGNTT 89
GW + N K F+ GDVLVF Y ++V V + + +C+ +TYS+G
Sbjct: 6 GWSFNVN---GARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDR 62
Query: 90 VTLSAPGDRYFVSGNRLYCFGGMKLHVHVP 119
+ L+ G YF+ +C GGMK+ ++
Sbjct: 63 IKLT-RGQNYFICSFPGHCGGGMKIAINAK 91
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 74 CNISNPLKTYSNGN----TTVTLSAPGDRYFVSGNR 105
N++ +++Y+ G ++ TL A GDR V+GNR
Sbjct: 141 VNLTYRIESYTTGGQIFISSTTLEAAGDRVHVNGNR 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,903,528
Number of Sequences: 62578
Number of extensions: 202332
Number of successful extensions: 288
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 7
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)