Query 042916
Match_columns 189
No_of_seqs 148 out of 849
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.2E-42 2.5E-47 283.3 15.5 117 3-120 2-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 9.3E-32 2E-36 197.3 1.9 81 32-112 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.5 1.7E-06 3.6E-11 66.7 10.6 88 19-119 26-119 (119)
4 PF00127 Copper-bind: Copper b 98.1 5.9E-06 1.3E-10 61.3 6.1 75 43-119 17-99 (99)
5 TIGR02656 cyanin_plasto plasto 97.9 4.6E-05 1E-09 56.6 7.4 88 24-119 3-99 (99)
6 TIGR03102 halo_cynanin halocya 97.8 0.00014 3E-09 56.3 8.9 87 20-119 22-115 (115)
7 TIGR02375 pseudoazurin pseudoa 97.6 0.00033 7.2E-09 54.3 8.2 74 43-121 15-89 (116)
8 COG3794 PetE Plastocyanin [Ene 97.6 0.00041 9E-09 54.8 8.6 81 26-120 43-128 (128)
9 KOG3858 Ephrin, ligand for Eph 96.9 0.026 5.6E-07 48.8 12.9 77 46-123 46-164 (233)
10 TIGR02657 amicyanin amicyanin. 96.6 0.015 3.2E-07 41.7 7.6 70 43-119 11-83 (83)
11 TIGR03095 rusti_cyanin rusticy 96.2 0.023 4.9E-07 45.6 7.4 33 87-119 116-148 (148)
12 PF00812 Ephrin: Ephrin; Inte 96.0 0.0033 7.1E-08 50.6 1.5 75 45-119 24-144 (145)
13 PF06525 SoxE: Sulfocyanin (So 95.7 0.05 1.1E-06 45.9 7.6 77 46-122 89-189 (196)
14 TIGR03096 nitroso_cyanin nitro 94.1 0.1 2.2E-06 41.7 4.9 64 37-108 55-122 (135)
15 TIGR03094 sulfo_cyanin sulfocy 93.6 0.069 1.5E-06 44.9 3.2 29 93-121 159-187 (195)
16 COG4454 Uncharacterized copper 93.4 0.13 2.9E-06 42.0 4.4 78 42-119 62-157 (158)
17 PF13473 Cupredoxin_1: Cupredo 90.5 0.43 9.3E-06 35.2 4.0 64 43-118 35-104 (104)
18 PRK02888 nitrous-oxide reducta 82.9 2.9 6.4E-05 41.1 6.0 73 44-120 556-634 (635)
19 COG1622 CyoA Heme/copper-type 80.3 5.5 0.00012 34.7 6.3 91 26-123 118-215 (247)
20 PF07732 Cu-oxidase_3: Multico 75.8 2.4 5.1E-05 32.4 2.4 78 44-121 27-116 (117)
21 PF00116 COX2: Cytochrome C ox 75.6 4.7 0.0001 31.0 4.1 66 43-118 46-119 (120)
22 TIGR02695 azurin azurin. Azuri 72.4 6.5 0.00014 31.1 4.1 33 84-117 86-124 (125)
23 PLN02604 oxidoreductase 71.7 29 0.00062 33.5 9.2 86 32-121 46-145 (566)
24 TIGR02376 Cu_nitrite_red nitri 70.0 13 0.00029 32.9 6.1 73 44-121 60-147 (311)
25 cd06555 ASCH_PF0470_like ASC-1 69.1 4.3 9.3E-05 31.2 2.4 23 44-66 29-53 (109)
26 PLN02354 copper ion binding / 65.3 61 0.0013 31.3 9.9 73 45-121 60-147 (552)
27 TIGR01480 copper_res_A copper- 65.0 22 0.00048 34.6 6.9 83 32-118 488-586 (587)
28 TIGR02866 CoxB cytochrome c ox 64.6 24 0.00051 29.3 6.2 85 23-121 93-193 (201)
29 PF02839 CBM_5_12: Carbohydrat 64.5 3.4 7.3E-05 25.5 0.9 19 38-56 1-19 (41)
30 PF10377 ATG11: Autophagy-rela 63.8 11 0.00024 29.5 3.9 18 45-62 41-58 (129)
31 PRK09723 putative fimbrial-lik 61.5 75 0.0016 30.0 9.5 13 19-31 25-37 (421)
32 MTH00047 COX2 cytochrome c oxi 60.4 12 0.00027 31.3 3.8 32 89-122 159-193 (194)
33 PRK10378 inactive ferrous ion 59.5 63 0.0014 30.0 8.5 27 89-120 91-117 (375)
34 PF10731 Anophelin: Thrombin i 57.7 8.6 0.00019 26.9 2.0 33 1-33 1-34 (65)
35 PF05283 MGC-24: Multi-glycosy 57.7 96 0.0021 26.1 8.6 22 93-114 71-92 (186)
36 PF12961 DUF3850: Domain of Un 57.2 6.6 0.00014 28.2 1.4 14 43-56 25-38 (72)
37 TIGR03388 ascorbase L-ascorbat 54.7 27 0.0006 33.3 5.6 78 44-121 33-122 (541)
38 PLN02835 oxidoreductase 53.6 1.6E+02 0.0034 28.4 10.5 78 44-121 61-149 (539)
39 PF07172 GRP: Glycine rich pro 52.8 8.6 0.00019 28.8 1.5 23 1-23 1-27 (95)
40 PRK09838 periplasmic copper-bi 52.8 60 0.0013 25.1 6.2 23 38-60 80-102 (115)
41 PRK11528 hypothetical protein; 51.3 20 0.00044 31.3 3.8 58 1-62 1-67 (254)
42 PF06291 Lambda_Bor: Bor prote 50.7 23 0.0005 26.7 3.5 27 1-29 1-27 (97)
43 PF09451 ATG27: Autophagy-rela 44.9 15 0.00033 31.9 2.0 28 16-43 218-245 (268)
44 PF07731 Cu-oxidase_2: Multico 44.6 30 0.00064 26.0 3.4 78 43-120 34-136 (138)
45 PF08139 LPAM_1: Prokaryotic m 44.2 20 0.00044 20.7 1.8 18 1-18 6-23 (25)
46 PLN00044 multi-copper oxidase- 42.8 60 0.0013 31.8 5.9 74 45-122 62-150 (596)
47 PF14326 DUF4384: Domain of un 41.5 30 0.00065 24.5 2.8 21 46-66 2-24 (83)
48 MTH00140 COX2 cytochrome c oxi 40.9 34 0.00075 29.1 3.6 31 89-121 183-216 (228)
49 PF02402 Lysis_col: Lysis prot 39.6 13 0.00028 24.4 0.6 22 1-22 1-22 (46)
50 COG3889 Predicted solute bindi 38.2 53 0.0011 33.5 4.7 9 140-148 826-834 (872)
51 PF01708 Gemini_mov: Geminivir 37.3 85 0.0018 23.6 4.7 30 157-186 27-56 (91)
52 PRK10808 outer membrane protei 36.8 29 0.00063 30.9 2.6 34 1-34 1-38 (351)
53 PF05382 Amidase_5: Bacterioph 36.4 96 0.0021 24.9 5.3 34 45-78 74-113 (145)
54 PTZ00047 cytochrome c oxidase 34.9 53 0.0011 27.1 3.6 30 89-120 116-148 (162)
55 COG4459 NapE Periplasmic nitra 34.5 28 0.00061 24.1 1.6 9 180-188 43-51 (62)
56 MTH00154 COX2 cytochrome c oxi 34.1 53 0.0011 28.0 3.6 30 89-120 183-215 (227)
57 PRK12701 flgH flagellar basal 34.1 71 0.0015 27.6 4.4 19 40-58 62-80 (230)
58 PF02362 B3: B3 DNA binding do 32.9 43 0.00092 23.7 2.5 17 43-59 70-86 (100)
59 MTH00168 COX2 cytochrome c oxi 32.8 57 0.0012 27.7 3.6 31 89-121 183-216 (225)
60 TIGR01433 CyoA cytochrome o ub 32.6 56 0.0012 27.9 3.5 31 89-121 182-215 (226)
61 PLN02168 copper ion binding / 31.8 1.4E+02 0.0031 28.8 6.5 79 44-122 58-147 (545)
62 MTH00139 COX2 cytochrome c oxi 31.5 58 0.0013 27.6 3.5 31 89-121 183-216 (226)
63 MTH00117 COX2 cytochrome c oxi 31.0 68 0.0015 27.3 3.8 31 89-121 183-216 (227)
64 PRK12407 flgH flagellar basal 30.2 77 0.0017 27.2 4.0 19 40-58 58-76 (221)
65 PF02553 CbiN: Cobalt transpor 30.1 41 0.00089 24.2 2.0 10 35-44 46-55 (74)
66 MTH00098 COX2 cytochrome c oxi 29.9 67 0.0014 27.5 3.6 31 89-121 183-216 (227)
67 MTH00129 COX2 cytochrome c oxi 29.8 59 0.0013 27.8 3.2 31 89-121 183-216 (230)
68 smart00495 ChtBD3 Chitin-bindi 29.8 40 0.00087 20.6 1.7 18 38-55 1-18 (41)
69 PRK13861 type IV secretion sys 29.7 1.3E+02 0.0028 26.8 5.5 22 1-22 1-22 (292)
70 PF00686 CBM_20: Starch bindin 29.5 47 0.001 23.8 2.3 39 21-59 16-68 (96)
71 MTH00038 COX2 cytochrome c oxi 29.3 74 0.0016 27.1 3.8 31 89-121 183-216 (229)
72 KOG2315 Predicted translation 29.2 1.1E+02 0.0025 29.8 5.3 65 39-103 207-278 (566)
73 KOG3416 Predicted nucleic acid 28.8 56 0.0012 26.1 2.7 31 23-56 40-71 (134)
74 PLN00044 multi-copper oxidase- 28.6 2.7E+02 0.0059 27.4 7.9 39 84-122 497-537 (596)
75 TIGR02228 sigpep_I_arch signal 28.1 1.3E+02 0.0029 24.2 4.9 16 45-60 59-74 (158)
76 PLN02191 L-ascorbate oxidase 27.9 1.4E+02 0.0031 28.9 5.8 77 44-120 55-143 (574)
77 TIGR01480 copper_res_A copper- 27.8 1.5E+02 0.0033 28.9 6.0 77 44-121 77-163 (587)
78 MTH00023 COX2 cytochrome c oxi 27.6 76 0.0016 27.3 3.5 31 89-121 194-227 (240)
79 TIGR01432 QOXA cytochrome aa3 27.1 81 0.0018 26.5 3.6 31 89-121 173-206 (217)
80 KOG1546 Metacaspase involved i 27.0 36 0.00077 31.3 1.4 14 46-59 134-147 (362)
81 PLN02792 oxidoreductase 26.7 1.8E+02 0.0038 28.1 6.2 77 46-122 50-137 (536)
82 PF11604 CusF_Ec: Copper bindi 26.5 35 0.00075 23.7 1.0 23 38-60 34-56 (70)
83 PF11132 SplA: Transcriptional 26.2 53 0.0012 23.8 1.9 27 45-71 4-32 (75)
84 PRK10861 signal peptidase I; P 25.3 2.1E+02 0.0045 26.0 6.1 18 43-60 122-139 (324)
85 PLN02991 oxidoreductase 25.2 6.3E+02 0.014 24.4 10.6 123 2-127 10-154 (543)
86 TIGR02594 conserved hypothetic 25.0 55 0.0012 25.5 2.0 20 46-65 73-92 (129)
87 PF07437 YfaZ: YfaZ precursor; 24.7 72 0.0016 26.4 2.8 26 1-26 1-26 (180)
88 MTH00008 COX2 cytochrome c oxi 24.7 88 0.0019 26.7 3.4 31 89-121 183-216 (228)
89 cd05808 CBM20_alpha_amylase Al 24.5 65 0.0014 22.8 2.2 37 22-58 16-62 (95)
90 TIGR02973 nitrate_rd_NapE peri 24.4 86 0.0019 20.3 2.5 11 179-189 26-36 (42)
91 TIGR02972 TMAO_torE trimethyla 24.3 84 0.0018 20.8 2.5 11 179-189 31-41 (47)
92 PRK12696 flgH flagellar basal 23.8 1.1E+02 0.0025 26.4 4.0 17 41-57 60-76 (236)
93 COG1188 Ribosome-associated he 23.4 80 0.0017 24.0 2.6 23 43-65 45-67 (100)
94 TIGR03389 laccase laccase, pla 23.4 2.2E+02 0.0049 27.1 6.2 76 46-122 37-124 (539)
95 KOG3342 Signal peptidase I [In 22.9 35 0.00077 28.3 0.6 16 45-60 76-91 (180)
96 PF12791 RsgI_N: Anti-sigma fa 22.8 2.2E+02 0.0047 18.4 4.4 36 85-121 4-39 (56)
97 COG3627 PhnJ Uncharacterized e 22.8 51 0.0011 28.8 1.5 25 88-112 257-281 (291)
98 PF12988 DUF3872: Domain of un 22.6 1.6E+02 0.0035 23.7 4.3 82 30-121 23-122 (137)
99 MTH00076 COX2 cytochrome c oxi 22.3 1E+02 0.0022 26.3 3.4 30 89-120 183-215 (228)
100 cd05810 CBM20_alpha_MTH Glucan 22.2 60 0.0013 23.7 1.7 37 22-58 17-63 (97)
101 PF04225 OapA: Opacity-associa 21.4 1E+02 0.0022 22.3 2.7 20 45-64 41-60 (85)
102 MTH00051 COX2 cytochrome c oxi 21.4 1E+02 0.0022 26.5 3.1 31 89-121 187-220 (234)
103 PF05257 CHAP: CHAP domain; I 21.3 51 0.0011 24.6 1.1 26 32-57 46-73 (124)
104 PHA03387 gp37 spherodin-like p 21.2 5.8E+02 0.013 22.6 7.9 45 26-73 123-178 (267)
105 PF11149 DUF2924: Protein of u 21.2 79 0.0017 25.3 2.2 29 43-71 77-105 (136)
106 MTH00027 COX2 cytochrome c oxi 21.0 1.2E+02 0.0027 26.5 3.6 31 89-121 217-250 (262)
107 COG1430 Uncharacterized conser 20.9 53 0.0011 25.9 1.2 20 40-59 104-123 (126)
108 PF06796 NapE: Periplasmic nit 20.9 1E+02 0.0023 21.1 2.5 11 179-189 39-49 (56)
109 PF09792 But2: Ubiquitin 3 bin 20.4 1.3E+02 0.0027 24.0 3.3 31 89-122 100-130 (143)
110 cd05829 Sortase_E Sortase E (S 20.3 1.5E+02 0.0033 23.1 3.7 23 45-67 71-94 (144)
111 TIGR02052 MerP mercuric transp 20.3 88 0.0019 20.5 2.1 17 1-17 1-18 (92)
112 PF06462 Hyd_WA: Propeller; I 20.3 1.9E+02 0.0041 17.0 3.3 25 89-113 3-27 (32)
113 PF11777 DUF3316: Protein of u 20.1 86 0.0019 23.7 2.2 19 1-19 1-19 (114)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=283.34 Aligned_cols=117 Identities=29% Similarity=0.599 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHhhhhcceeEEEecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCCC-ceEEeCcccCCCCCCCCCcc
Q 042916 3 KLLLLHLLAVLSIALTSHAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSASN-SVTEVTKQNFDTCNISNPLK 81 (189)
Q Consensus 3 ~~~~~~l~~~~~~~~~~~a~~y~VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~~-sV~~V~k~~y~~C~~~~pi~ 81 (189)
++|++.+++++++...+++++|+|||+.||+.+.||++|+++|+|++||+|+|+|++++ +|+||+|++|++|+.++++.
T Consensus 2 ~~~~l~~~~~~~~~~~~~a~~~~VGd~~GW~~~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~ 81 (167)
T PLN03148 2 AHLLLFCFFALFSASATTATDHIVGANKGWNPGINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAG 81 (167)
T ss_pred cCHHHHHHHHHHhhhhccceEEEeCCCCCcCCCCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcc
Confidence 34444444444556678899999999999998889999999999999999999999875 59999999999999999999
Q ss_pred ccccCCeEEEccCCcceEEEeCCCCCCCCCCeEEEEecC
Q 042916 82 TYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 82 ~~~~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 120 (189)
.+++|++.|+|+++|+|||||+ .+||++||||+|+|.+
T Consensus 82 ~~tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 82 NWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred eecCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 9999999999999999999999 6999999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=9.3e-32 Score=197.27 Aligned_cols=81 Identities=49% Similarity=0.957 Sum_probs=67.6
Q ss_pred CccCC---CCCCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCCCccccccCCeEEEccCCcceEEEeCCCCC
Q 042916 32 WDISS---NLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLY 107 (189)
Q Consensus 32 W~~~~---~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G~~YFic~v~~H 107 (189)
|+++. +|++||++++|+|||+|+|+|+++ |+|+||+|++|++|+.++++..+.+|++.|+|+++|++||||++++|
T Consensus 1 W~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~H 80 (85)
T PF02298_consen 1 WTIPTNASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPGH 80 (85)
T ss_dssp SSSSSSTTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STTT
T ss_pred CccCCCccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCCc
Confidence 88876 899999999999999999999998 55999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 042916 108 CFGGM 112 (189)
Q Consensus 108 C~~Gm 112 (189)
|+.||
T Consensus 81 C~~Gq 85 (85)
T PF02298_consen 81 CQKGQ 85 (85)
T ss_dssp TTTT-
T ss_pred ccccC
Confidence 99998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.50 E-value=1.7e-06 Score=66.66 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=55.8
Q ss_pred cceeEEE--ecCCCCC-ccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCcccCCCCCCCCCccccccC-CeEEEc
Q 042916 19 SHAAQYF--VGDTSGW-DISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQNFDTCNISNPLKTYSNG-NTTVTL 92 (189)
Q Consensus 19 ~~a~~y~--VGd~~GW-~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~y~~C~~~~pi~~~~~G-~~~v~L 92 (189)
+.+++|+ +|.++|+ .+. .+..++++||+|.|..... |++.- +. .+....++ .....| ...+++
T Consensus 26 a~a~~~~V~~~~~~~~~~F~------P~~i~v~~Gd~V~~~N~~~~~H~v~~-~~--~~~~~~~~--~~~~pg~t~~~tF 94 (119)
T PRK02710 26 ASAETVEVKMGSDAGMLAFE------PSTLTIKAGDTVKWVNNKLAPHNAVF-DG--AKELSHKD--LAFAPGESWEETF 94 (119)
T ss_pred cccceEEEEEccCCCeeEEe------CCEEEEcCCCEEEEEECCCCCceEEe-cC--Cccccccc--cccCCCCEEEEEe
Confidence 3455554 5655444 333 3567999999999986542 55532 11 11111111 123344 347899
Q ss_pred cCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+++|.|-|+|. .|=+.|||-.|.|.
T Consensus 95 ~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 95 SEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred cCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 99999999999 79889999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.14 E-value=5.9e-06 Score=61.31 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCCceEeCCEEEEEecC--CCceEEeCcc--cCCCCCCCCC---ccccccCCe-EEEccCCcceEEEeCCCCCCCCCCeE
Q 042916 43 DDKVFKVGDVLVFSYSA--SNSVTEVTKQ--NFDTCNISNP---LKTYSNGNT-TVTLSAPGDRYFVSGNRLYCFGGMKL 114 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~--~~sV~~V~k~--~y~~C~~~~p---i~~~~~G~~-~v~L~~~G~~YFic~v~~HC~~GmKl 114 (189)
+..++++||+|.|.... .|+|...... .-..++.... ......|.+ .++++++|.|.|+|. + |...||+-
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 45789999999999954 3557665421 0111221111 112334544 788899999999999 8 99999999
Q ss_pred EEEec
Q 042916 115 HVHVP 119 (189)
Q Consensus 115 ~I~V~ 119 (189)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.93 E-value=4.6e-05 Score=56.62 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=54.1
Q ss_pred EEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCcc----c-CCCCCCCCCccccccCCe-EEEccC
Q 042916 24 YFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQ----N-FDTCNISNPLKTYSNGNT-TVTLSA 94 (189)
Q Consensus 24 y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~----~-y~~C~~~~pi~~~~~G~~-~v~L~~ 94 (189)
..||.+ .+-.+.+ +..++++||+|.|+.+.. |+|...+.. . ........-......|.+ .++++.
T Consensus 3 v~~g~~~g~~~F~P------~~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 3 VKMGADKGALVFEP------AKISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred EEEecCCCceeEeC------CEEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC
Confidence 445643 3355544 467999999999996542 445432211 0 000111000112234443 788999
Q ss_pred CcceEEEeCCCCCCCCCCeEEEEec
Q 042916 95 PGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 95 ~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+|.|-|+|. +|++.||+-.|.|.
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999999 89999999999984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.84 E-value=0.00014 Score=56.35 Aligned_cols=87 Identities=20% Similarity=0.254 Sum_probs=58.4
Q ss_pred ceeEEEecC--CC-CCccCCCCCCCCCCCceEeCCEEEEEecCC---CceEEeCcccCCCCCCCCCccccccC-CeEEEc
Q 042916 20 HAAQYFVGD--TS-GWDISSNLDTWPDDKVFKVGDVLVFSYSAS---NSVTEVTKQNFDTCNISNPLKTYSNG-NTTVTL 92 (189)
Q Consensus 20 ~a~~y~VGd--~~-GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~---~sV~~V~k~~y~~C~~~~pi~~~~~G-~~~v~L 92 (189)
...+..||. +. +..+.+ +..++++||+|.|+++.. |+|.-.....|+. .. .....| ...++|
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~-~~~~~G~t~s~Tf 90 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE-RVSEEGTTYEHTF 90 (115)
T ss_pred ceEEEEecccCCCCceeEeC------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc-cccCCCCEEEEEe
Confidence 345667872 22 355544 457999999999999752 4565333334441 11 122334 458999
Q ss_pred cCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+++|.|-|+|. -|=..|||-.|.|.
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 99999999999 58667999999984
No 7
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.64 E-value=0.00033 Score=54.26 Aligned_cols=74 Identities=18% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCCceEeCCEEEEEecC-CCceEEeCcccCCCCCCCCCccccccCCeEEEccCCcceEEEeCCCCCCCCCCeEEEEecCC
Q 042916 43 DDKVFKVGDVLVFSYSA-SNSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~-~~sV~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 121 (189)
+..++++||+|.|.+.. +|+|..+.....+. .+....-.+....++++++|.|-|.|. .|=..||+-.|.|...
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 45789999999999976 45565432211110 111111113334789999999999999 7999999999999864
No 8
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.62 E-value=0.00041 Score=54.81 Aligned_cols=81 Identities=22% Similarity=0.199 Sum_probs=56.0
Q ss_pred ecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCcccCCCCCCCCCccccccC---CeEEEccCCcceEE
Q 042916 26 VGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQNFDTCNISNPLKTYSNG---NTTVTLSAPGDRYF 100 (189)
Q Consensus 26 VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~y~~C~~~~pi~~~~~G---~~~v~L~~~G~~YF 100 (189)
+++...-.+.+ +..++++||++.|.+... |+|.-+...+ . .....+..+ ..+.+++++|.|.|
T Consensus 43 ~~~~~~~vF~P------A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~-~g~~~~~~~~~~s~~~Tfe~~G~Y~Y 110 (128)
T COG3794 43 GVDIGAMVFEP------AEVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----P-EGSGTLKAGINESFTHTFETPGEYTY 110 (128)
T ss_pred eccCcceeEcC------cEEEECCCCEEEEEECCCCCceEEEeCCCC-----c-ccccccccCCCcceEEEecccceEEE
Confidence 33334455554 568999999999999875 5577654331 1 111222222 23788999999999
Q ss_pred EeCCCCCCCCCCeEEEEecC
Q 042916 101 VSGNRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 101 ic~v~~HC~~GmKl~I~V~~ 120 (189)
+|.- |=..|||-.|.|.+
T Consensus 111 ~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 111 YCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred Eecc--CCCCCcEEEEEeCC
Confidence 9994 88899999999963
No 9
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=96.95 E-value=0.026 Score=48.81 Aligned_cols=77 Identities=23% Similarity=0.451 Sum_probs=47.4
Q ss_pred ceEeCCEEEEEecC---C------Cc-eEEeCcccCCCCCC-CCCcccc--ccC--Ce--------------EEEccCCc
Q 042916 46 VFKVGDVLVFSYSA---S------NS-VTEVTKQNFDTCNI-SNPLKTY--SNG--NT--------------TVTLSAPG 96 (189)
Q Consensus 46 tF~vGD~L~F~y~~---~------~s-V~~V~k~~y~~C~~-~~pi~~~--~~G--~~--------------~v~L~~~G 96 (189)
-.++||.|-+--.. + +. +++|++++|+.|+. +.+...+ +.- +. -+.+ +||
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~pG 124 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QPG 124 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccc-cCC
Confidence 45779999886532 1 24 67999999999996 3433222 111 11 1122 267
Q ss_pred -ceEEEeC-----------CCCCCCC-CCeEEEEecCCCC
Q 042916 97 -DRYFVSG-----------NRLYCFG-GMKLHVHVPADEV 123 (189)
Q Consensus 97 -~~YFic~-----------v~~HC~~-GmKl~I~V~~~~~ 123 (189)
+|||||+ .++-|.. .||+.+.|.....
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 6899985 2345554 5999999976543
No 10
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.60 E-value=0.015 Score=41.74 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=45.6
Q ss_pred CCCceEeCCEEEEEecCC--CceEEeCcccCCCCCCCCCccccccCC-eEEEccCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 43 DDKVFKVGDVLVFSYSAS--NSVTEVTKQNFDTCNISNPLKTYSNGN-TTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~--~sV~~V~k~~y~~C~~~~pi~~~~~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+..++++||+|.|+.+.. |+|.-.+..+ ..=+..++ ....|. ..++++++|.|-|.|.... .||-.|.|.
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~-~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVL-GEAALKGP--MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCC-cccccccc--ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 446889999999998754 5576443221 11001111 123343 4789999999999999743 599998874
No 11
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.22 E-value=0.023 Score=45.63 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=29.0
Q ss_pred CeEEEccCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 87 NTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 87 ~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
.-+++++++|.|||.|.+++|=+.||+-.|.|.
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 347778899999999999999999999988874
No 12
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.99 E-value=0.0033 Score=50.65 Aligned_cols=75 Identities=24% Similarity=0.542 Sum_probs=45.5
Q ss_pred CceEeCCEEEEEecC---C--------Cc-eEEeCcccCCCCCCC-CCcccc--c-----cCCeEEEc--c---------
Q 042916 45 KVFKVGDVLVFSYSA---S--------NS-VTEVTKQNFDTCNIS-NPLKTY--S-----NGNTTVTL--S--------- 93 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~---~--------~s-V~~V~k~~y~~C~~~-~pi~~~--~-----~G~~~v~L--~--------- 93 (189)
..+++||.|.+--.. . .. +++|++++|+.|+.. ++...+ + .|..+|++ .
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 467889999997643 2 12 778999999999963 332222 1 23444443 1
Q ss_pred --CCc-ceEEEeCC-----------CCCCCC-CCeEEEEec
Q 042916 94 --APG-DRYFVSGN-----------RLYCFG-GMKLHVHVP 119 (189)
Q Consensus 94 --~~G-~~YFic~v-----------~~HC~~-GmKl~I~V~ 119 (189)
++| +||||++- +|-|.. .|||.+.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 267 69999852 233765 699999884
No 13
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.72 E-value=0.05 Score=45.94 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=47.8
Q ss_pred ceEeCCEEEEEecCC----CceEEe-CcccCCCCCCC---CCcccc-------------ccCCeE--EE-ccCCcceEEE
Q 042916 46 VFKVGDVLVFSYSAS----NSVTEV-TKQNFDTCNIS---NPLKTY-------------SNGNTT--VT-LSAPGDRYFV 101 (189)
Q Consensus 46 tF~vGD~L~F~y~~~----~sV~~V-~k~~y~~C~~~---~pi~~~-------------~~G~~~--v~-L~~~G~~YFi 101 (189)
-+-.|-++.|+|.+. |++..| +...+..+..- +.+..+ ..|... +. -..+|.||++
T Consensus 89 ~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~Ywlv 168 (196)
T PF06525_consen 89 YVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLV 168 (196)
T ss_pred EEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEE
Confidence 345688999999763 445444 33333344221 222110 123332 11 1358999999
Q ss_pred eCCCCCCCCCCeEEEEecCCC
Q 042916 102 SGNRLYCFGGMKLHVHVPADE 122 (189)
Q Consensus 102 c~v~~HC~~GmKl~I~V~~~~ 122 (189)
|+++||=+.||-..+.|.+.-
T Consensus 169 C~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 169 CGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred ccCCChhhcCCEEEEEEecCc
Confidence 999999999999999997653
No 14
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=94.10 E-value=0.1 Score=41.69 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=38.3
Q ss_pred CCCCCCCCCceEeCCEEEEEecCCCce-EEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCCCCCC
Q 042916 37 NLDTWPDDKVFKVGDVLVFSYSASNSV-TEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGNRLYC 108 (189)
Q Consensus 37 ~Y~~Wa~~~tF~vGD~L~F~y~~~~sV-~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v~~HC 108 (189)
+|.-=.+..+++.||.+.+.+.+...+ ..+.-.+|+ . ......|.+ +++.+++|.|.|.|+. ||
T Consensus 55 n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---i---s~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 55 NVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYG---I---SEVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred eeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCC---c---ceEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 333334567889999999888654322 112112232 1 122334444 5777999999999996 55
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.57 E-value=0.069 Score=44.86 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=26.3
Q ss_pred cCCcceEEEeCCCCCCCCCCeEEEEecCC
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 121 (189)
.++|.||++|+++||-+.||=..+.|.+.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 47899999999999999999999988764
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.37 E-value=0.13 Score=42.02 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=49.4
Q ss_pred CCCCceEeCCEEEEEecCC-CceEEe--Cccc-----CCCC----CC--CCCc-cccccC---CeEEEccCCcceEEEeC
Q 042916 42 PDDKVFKVGDVLVFSYSAS-NSVTEV--TKQN-----FDTC----NI--SNPL-KTYSNG---NTTVTLSAPGDRYFVSG 103 (189)
Q Consensus 42 a~~~tF~vGD~L~F~y~~~-~sV~~V--~k~~-----y~~C----~~--~~pi-~~~~~G---~~~v~L~~~G~~YFic~ 103 (189)
.+...++-|-+++|.-.+. +-+.+. .+++ +..= +. .++. .....| .-.+.++++|.|=|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 3557888999999887664 212221 1111 1110 10 1111 122333 34788899999999999
Q ss_pred CCCCCCCCCeEEEEec
Q 042916 104 NRLYCFGGMKLHVHVP 119 (189)
Q Consensus 104 v~~HC~~GmKl~I~V~ 119 (189)
+++|-+.||.-.|+|.
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999995
No 17
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=90.50 E-value=0.43 Score=35.21 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=29.7
Q ss_pred CCCceEeCCEEEEEecCC---CceEEeCcccCCCCCCCCCccccccCCe-EEEc--cCCcceEEEeCCCCCCCCCCeEEE
Q 042916 43 DDKVFKVGDVLVFSYSAS---NSVTEVTKQNFDTCNISNPLKTYSNGNT-TVTL--SAPGDRYFVSGNRLYCFGGMKLHV 116 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~---~sV~~V~k~~y~~C~~~~pi~~~~~G~~-~v~L--~~~G~~YFic~v~~HC~~GmKl~I 116 (189)
+..+++.|+.+.+.+.+. .|-+++.+- +.......|.+ ++++ .++|.|=|+|++..+ ||-.|
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDL--------GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCC--------ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 467899999555555442 232333331 11123344443 4555 999999999997663 55555
Q ss_pred Ee
Q 042916 117 HV 118 (189)
Q Consensus 117 ~V 118 (189)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 43
No 18
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.89 E-value=2.9 Score=41.06 Aligned_cols=73 Identities=19% Similarity=0.163 Sum_probs=42.0
Q ss_pred CCceEeCCEEEEEecCCCceEEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCC---CCCCCCCCeEEEE
Q 042916 44 DKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGN---RLYCFGGMKLHVH 117 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~~sV~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v---~~HC~~GmKl~I~ 117 (189)
..+++.||.+.|..++-+.+.-|... |. +..-+.......|.+ .|+.++||.|+++|+. .+| .+|+-.|.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHG-F~-Ip~~nI~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H--~~M~G~~i 631 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHG-FA-IPNYGVNMEVAPQATASVTFTADKPGVYWYYCTWFCHALH--MEMRGRML 631 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccc-ee-ecccCccEEEcCCceEEEEEEcCCCEEEEEECCcccccCc--ccceEEEE
Confidence 46788999999998773111101000 00 000111112234433 6778999999999997 244 37988888
Q ss_pred ecC
Q 042916 118 VPA 120 (189)
Q Consensus 118 V~~ 120 (189)
|+.
T Consensus 632 Vep 634 (635)
T PRK02888 632 VEP 634 (635)
T ss_pred EEe
Confidence 864
No 19
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=80.27 E-value=5.5 Score=34.69 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=54.1
Q ss_pred ecCCCCCccC-CCCCCCCCC-CceEeCCEEEEEecCCC--ceEEeCcccCCCCCCCCCccccccCCeEEEccCCcceEEE
Q 042916 26 VGDTSGWDIS-SNLDTWPDD-KVFKVGDVLVFSYSASN--SVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFV 101 (189)
Q Consensus 26 VGd~~GW~~~-~~Y~~Wa~~-~tF~vGD~L~F~y~~~~--sV~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G~~YFi 101 (189)
+|-.-.|.+. ++|.-+..+ ..+.+|..+.|+-++.+ |=+.+.+-..+.=...+ ..-...++.+++|.|+.+
T Consensus 118 ~~~qw~W~f~Yp~~~~~t~n~l~lPv~~~V~f~ltS~DViHsF~IP~l~~k~d~iPG-----~~~~~~~~~~~~G~Y~g~ 192 (247)
T COG1622 118 TAYQWKWLFIYPDYGIATVNELVLPVGRPVRFKLTSADVIHSFWIPQLGGKIDAIPG-----MTTELWLTANKPGTYRGI 192 (247)
T ss_pred EEEEEEEEEEccCcCccccceEEEeCCCeEEEEEEechhceeEEecCCCceeeecCC-----ceEEEEEecCCCeEEEEE
Confidence 3333346552 334444444 68899999999998763 32233222111100111 111236788999999999
Q ss_pred eCCCCCCCCC---CeEEEEecCCCC
Q 042916 102 SGNRLYCFGG---MKLHVHVPADEV 123 (189)
Q Consensus 102 c~v~~HC~~G---mKl~I~V~~~~~ 123 (189)
|.+ .|..| |++.|.|.+...
T Consensus 193 Cae--~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 193 CAE--YCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred cHh--hcCCCcccceEEEEEEcHHH
Confidence 985 56554 999999988653
No 20
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=75.81 E-value=2.4 Score=32.40 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=46.7
Q ss_pred CCceEeCCEEEEEecCC--C--ceEE--e--Ccc-cCCC--CCCCCCccccccCCeEEEccC-CcceEEEeCCCCCCCCC
Q 042916 44 DKVFKVGDVLVFSYSAS--N--SVTE--V--TKQ-NFDT--CNISNPLKTYSNGNTTVTLSA-PGDRYFVSGNRLYCFGG 111 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~--~--sV~~--V--~k~-~y~~--C~~~~pi~~~~~G~~~v~L~~-~G~~YFic~v~~HC~~G 111 (189)
..+++.||.|..++.+. + ++.. + ... ..|. .....++..-.+-...|++++ +|.+||-|-..+|=..|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~G 106 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMG 106 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTT
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCc
Confidence 36889999999999763 2 2321 1 111 1111 111122222122223778888 99999999988854489
Q ss_pred CeEEEEecCC
Q 042916 112 MKLHVHVPAD 121 (189)
Q Consensus 112 mKl~I~V~~~ 121 (189)
|--.+.|...
T Consensus 107 L~G~~iV~~~ 116 (117)
T PF07732_consen 107 LYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEE-T
T ss_pred CEEEEEEcCC
Confidence 9988888753
No 21
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=75.62 E-value=4.7 Score=30.99 Aligned_cols=66 Identities=23% Similarity=0.336 Sum_probs=40.3
Q ss_pred CCCceEeCCEEEEEecCCC--ceEEeCcccCCCCCCCCCccccccCC---eEEEccCCcceEEEeCCCCCCCCC---CeE
Q 042916 43 DDKVFKVGDVLVFSYSASN--SVTEVTKQNFDTCNISNPLKTYSNGN---TTVTLSAPGDRYFVSGNRLYCFGG---MKL 114 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~--sV~~V~k~~y~~C~~~~pi~~~~~G~---~~v~L~~~G~~YFic~v~~HC~~G---mKl 114 (189)
....+..|+.+.|+-++.+ |=+-+.+-..+ ...-.|. ..++.++||.|++.|.. .|..| |+.
T Consensus 46 ~~l~lp~g~~v~~~ltS~DViHsf~ip~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~ 115 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDVIHSFWIPELGIK--------MDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPG 115 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS-EEEEETTCTEE--------EEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EE
T ss_pred ceecccccceEeEEEEcCCccccccccccCcc--------cccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeE
Confidence 3356688999999998753 31222221110 1112343 36778999999999996 77776 888
Q ss_pred EEEe
Q 042916 115 HVHV 118 (189)
Q Consensus 115 ~I~V 118 (189)
.|.|
T Consensus 116 ~v~V 119 (120)
T PF00116_consen 116 KVIV 119 (120)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8776
No 22
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=72.40 E-value=6.5 Score=31.09 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=23.4
Q ss_pred ccCC-eEEEcc----CCc-ceEEEeCCCCCCCCCCeEEEE
Q 042916 84 SNGN-TTVTLS----APG-DRYFVSGNRLYCFGGMKLHVH 117 (189)
Q Consensus 84 ~~G~-~~v~L~----~~G-~~YFic~v~~HC~~GmKl~I~ 117 (189)
..|. ++|+++ ++| .|=|+|++|||=. .||-.+.
T Consensus 86 ggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 86 GGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 3443 456665 467 4999999999975 6887654
No 23
>PLN02604 oxidoreductase
Probab=71.65 E-value=29 Score=33.48 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=52.4
Q ss_pred CccCCCCCCCCCCCceEeCCEEEEEecCC---C-c-eE--EeC--ccc-CCCCCCCCCc-cccccCCe---EEEccCCcc
Q 042916 32 WDISSNLDTWPDDKVFKVGDVLVFSYSAS---N-S-VT--EVT--KQN-FDTCNISNPL-KTYSNGNT---TVTLSAPGD 97 (189)
Q Consensus 32 W~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~---~-s-V~--~V~--k~~-y~~C~~~~pi-~~~~~G~~---~v~L~~~G~ 97 (189)
|.++-.+ .....+++.||.++++..+. + + +. -+. ... +|. ..+.. .....|.+ .|+++++|+
T Consensus 46 ~~~Ng~~--pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt 121 (566)
T PLN02604 46 ITINGRS--PGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGT 121 (566)
T ss_pred EEECCcc--CCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEE
Confidence 5554323 22457899999999988653 1 1 22 111 111 111 00000 01233433 778899999
Q ss_pred eEEEeCCCCCCCCCCeEEEEecCC
Q 042916 98 RYFVSGNRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 98 ~YFic~v~~HC~~GmKl~I~V~~~ 121 (189)
+||=|-...|-..||.-.|.|...
T Consensus 122 ~wyH~H~~~q~~~Gl~G~liV~~~ 145 (566)
T PLN02604 122 YLYHAHYGMQREAGLYGSIRVSLP 145 (566)
T ss_pred EEEeeCcHHHHhCCCeEEEEEEec
Confidence 999999999999999999999754
No 24
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=69.99 E-value=13 Score=32.94 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=47.2
Q ss_pred CCceEeCCEEEEEecCC-----Cc-eEE--eCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCC----CCCC
Q 042916 44 DKVFKVGDVLVFSYSAS-----NS-VTE--VTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGN----RLYC 108 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~-----~s-V~~--V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v----~~HC 108 (189)
..+++.||.++.++.+. .| +.. .+.. +..........|.+ .|+++.+|+|||-|.. ..|=
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~-----dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~ 134 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGA-----LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHV 134 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCcc-----CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHh
Confidence 36889999999888654 12 221 1110 01111122344543 7788999999999985 4587
Q ss_pred CCCCeEEEEecCC
Q 042916 109 FGGMKLHVHVPAD 121 (189)
Q Consensus 109 ~~GmKl~I~V~~~ 121 (189)
..||.-.+.|...
T Consensus 135 ~~Gl~G~liV~~~ 147 (311)
T TIGR02376 135 VSGMNGAIMVLPR 147 (311)
T ss_pred hcCcceEEEeecc
Confidence 8899999999864
No 25
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=69.13 E-value=4.3 Score=31.22 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=15.7
Q ss_pred CCceEeCCEEEEEecC-CCc-eEEe
Q 042916 44 DKVFKVGDVLVFSYSA-SNS-VTEV 66 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~-~~s-V~~V 66 (189)
.++|++||.|+|+--. +.. +++|
T Consensus 29 r~~ikvGD~I~f~~~~~~~~l~v~V 53 (109)
T cd06555 29 RQQIKVGDKILFNDLDTGQQLLVKV 53 (109)
T ss_pred hhcCCCCCEEEEEEcCCCcEEEEEE
Confidence 3689999999996543 443 3444
No 26
>PLN02354 copper ion binding / oxidoreductase
Probab=65.28 E-value=61 Score=31.32 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=48.3
Q ss_pred CceEeCCEEEEEecCC-------C-c-eEEeCcccCC-----CCCCCCCccccccCCeEEEc-cCCcceEEEeCCCCCCC
Q 042916 45 KVFKVGDVLVFSYSAS-------N-S-VTEVTKQNFD-----TCNISNPLKTYSNGNTTVTL-SAPGDRYFVSGNRLYCF 109 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~-------~-s-V~~V~k~~y~-----~C~~~~pi~~~~~G~~~v~L-~~~G~~YFic~v~~HC~ 109 (189)
.+++.||+|+.+..+. | | +.+......| .| ||.-..+=...|++ +++|+|||=+-...+-.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCccceec
Confidence 6889999999888653 2 3 5443222122 24 33221222236776 57899999998888888
Q ss_pred CCCeEEEEecCC
Q 042916 110 GGMKLHVHVPAD 121 (189)
Q Consensus 110 ~GmKl~I~V~~~ 121 (189)
.|+.-.|.|...
T Consensus 136 ~Gl~G~lII~~~ 147 (552)
T PLN02354 136 AGGFGGLRVNSR 147 (552)
T ss_pred CCccceEEEcCC
Confidence 899999999754
No 27
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=64.96 E-value=22 Score=34.64 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=53.2
Q ss_pred CccCCC-CCCCCCCCceEeCCEEEEEecCC----C----c--eEEeCccc--CCCCCCCCCccccccCCe---EEEccCC
Q 042916 32 WDISSN-LDTWPDDKVFKVGDVLVFSYSAS----N----S--VTEVTKQN--FDTCNISNPLKTYSNGNT---TVTLSAP 95 (189)
Q Consensus 32 W~~~~~-Y~~Wa~~~tF~vGD~L~F~y~~~----~----s--V~~V~k~~--y~~C~~~~pi~~~~~G~~---~v~L~~~ 95 (189)
|.++-. |.. ....+++.||.+++.+.+. | | .++|...+ |.. ..+.+ ....|.+ .|..+.|
T Consensus 488 wtiNG~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv-~V~Pg~t~~~~f~ad~p 563 (587)
T TIGR01480 488 WSFDGEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTV-DVPPGGKRSFRVTADAL 563 (587)
T ss_pred EEECCccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCce-eeCCCCEEEEEEECCCC
Confidence 888632 332 2357899999999999764 2 2 34442221 110 00111 1223332 6778999
Q ss_pred cceEEEeCCCCCCCCCCeEEEEe
Q 042916 96 GDRYFVSGNRLYCFGGMKLHVHV 118 (189)
Q Consensus 96 G~~YFic~v~~HC~~GmKl~I~V 118 (189)
|.++|=|-+..|=+.||--.|.|
T Consensus 564 G~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 564 GRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred eEEEEcCCCHHHHhCcCcEEEEe
Confidence 99999999999999999888776
No 28
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=64.58 E-value=24 Score=29.26 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=49.6
Q ss_pred EEEecCCCCCccCCCCCCC------CCCCceEeCCEEEEEecCC---CceEEeCcccCCCCCCCCCccc-cccCC---eE
Q 042916 23 QYFVGDTSGWDISSNLDTW------PDDKVFKVGDVLVFSYSAS---NSVTEVTKQNFDTCNISNPLKT-YSNGN---TT 89 (189)
Q Consensus 23 ~y~VGd~~GW~~~~~Y~~W------a~~~tF~vGD~L~F~y~~~---~sV~~V~k~~y~~C~~~~pi~~-~~~G~---~~ 89 (189)
..++|..=.|.+ .|.+. .+...+.+|+.++|+-++. |+-. +..- .++. --.|. ..
T Consensus 93 i~v~~~qw~W~f--~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~Hsf~-ip~~---------~~k~da~PG~~~~~~ 160 (201)
T TIGR02866 93 VKVEGHQWYWSF--DYPESRRGFTTVNELVVPAGTPVRLQVTSKDVIHSFW-VPEL---------GGKIDAIPGQYNALW 160 (201)
T ss_pred EEEEEEEeEEEE--EcCCcCCCccccCEEEEEcCCEEEEEEEeCchhhccc-cccc---------CceEEecCCcEEEEE
Confidence 344555445665 34333 1234678889999988764 2211 1100 0111 11233 25
Q ss_pred EEccCCcceEEEeCC---CCCCCCCCeEEEEecCC
Q 042916 90 VTLSAPGDRYFVSGN---RLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 90 v~L~~~G~~YFic~v---~~HC~~GmKl~I~V~~~ 121 (189)
++.+++|.|++.|++ .+| ..|+..|.|.+.
T Consensus 161 ~~~~~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~ 193 (201)
T TIGR02866 161 FNADEPGVYYGYCAELCGAGH--SLMLFKVVVVER 193 (201)
T ss_pred EEeCCCEEEEEEehhhCCcCc--cCCeEEEEEECH
Confidence 678999999999997 344 559999998753
No 29
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=64.52 E-value=3.4 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.615 Sum_probs=11.4
Q ss_pred CCCCCCCCceEeCCEEEEE
Q 042916 38 LDTWPDDKVFKVGDVLVFS 56 (189)
Q Consensus 38 Y~~Wa~~~tF~vGD~L~F~ 56 (189)
|..|..+++...||.+.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5679999999999999863
No 30
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=63.78 E-value=11 Score=29.54 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=15.9
Q ss_pred CceEeCCEEEEEecCCCc
Q 042916 45 KVFKVGDVLVFSYSASNS 62 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~~s 62 (189)
++|++||.+.|-++..++
T Consensus 41 ~~f~~GDlvLflpt~~~~ 58 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHN 58 (129)
T ss_pred ecCCCCCEEEEEecCCCC
Confidence 589999999999998765
No 31
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=61.47 E-value=75 Score=29.99 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=9.3
Q ss_pred cceeEEEecCCCC
Q 042916 19 SHAAQYFVGDTSG 31 (189)
Q Consensus 19 ~~a~~y~VGd~~G 31 (189)
.....|+||+..|
T Consensus 25 ~~~~~~~vg~~~~ 37 (421)
T PRK09723 25 DDNVSYIVGNYYG 37 (421)
T ss_pred cCceEEEEccccc
Confidence 4467899998644
No 32
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=60.44 E-value=12 Score=31.29 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=25.7
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPADE 122 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~~ 122 (189)
.++.+++|.|+..|.. .|..| |++.|.|.+..
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 5667999999999985 66664 99999997653
No 33
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=59.52 E-value=63 Score=29.97 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEccCCcceEEEeCCCCCCCCCCeEEEEecC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 120 (189)
.++| +||+|-|+|+. | ..||-.|+|..
T Consensus 91 ~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg 117 (375)
T PRK10378 91 TANL-QPGEYDMTCGL--L--TNPKGKLIVKG 117 (375)
T ss_pred EEec-CCceEEeecCc--C--CCCCceEEEeC
Confidence 5566 69999999976 5 33577788864
No 34
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=57.74 E-value=8.6 Score=26.90 Aligned_cols=33 Identities=33% Similarity=0.567 Sum_probs=20.0
Q ss_pred ChhH-HHHHHHHHHHhhhhcceeEEEecCCCCCc
Q 042916 1 MAKL-LLLHLLAVLSIALTSHAAQYFVGDTSGWD 33 (189)
Q Consensus 1 M~~~-~~~~l~~~~~~~~~~~a~~y~VGd~~GW~ 33 (189)
||.+ ++++|+.+.+.+..-+|-+|.-|+.-..+
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP~YD 34 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEPSYD 34 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCCCcC
Confidence 6654 45555544444455667799999864443
No 35
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=57.66 E-value=96 Score=26.07 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=16.3
Q ss_pred cCCcceEEEeCCCCCCCCCCeE
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKL 114 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl 114 (189)
+..+-.|.-|.-.+||-.--.+
T Consensus 71 n~s~C~W~~C~~~~~Cv~~stV 92 (186)
T PF05283_consen 71 NNSTCVWMECKGESYCVNNSTV 92 (186)
T ss_pred ccCceEeeecCCCCcccCCccc
Confidence 3457789999988999975443
No 36
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=57.22 E-value=6.6 Score=28.20 Aligned_cols=14 Identities=50% Similarity=1.004 Sum_probs=11.7
Q ss_pred CCCceEeCCEEEEE
Q 042916 43 DDKVFKVGDVLVFS 56 (189)
Q Consensus 43 ~~~tF~vGD~L~F~ 56 (189)
+++.|+|||.|+++
T Consensus 25 NDRdf~VGD~L~L~ 38 (72)
T PF12961_consen 25 NDRDFQVGDILVLR 38 (72)
T ss_pred cCCCCCCCCEEEEE
Confidence 36789999999874
No 37
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=54.66 E-value=27 Score=33.32 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=48.9
Q ss_pred CCceEeCCEEEEEecCC---C-c-eE--Ee--CcccC-CC--CCCCCCccccccCCeEEEccCCcceEEEeCCCCCCCCC
Q 042916 44 DKVFKVGDVLVFSYSAS---N-S-VT--EV--TKQNF-DT--CNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGG 111 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~---~-s-V~--~V--~k~~y-~~--C~~~~pi~~~~~G~~~v~L~~~G~~YFic~v~~HC~~G 111 (189)
..+++.||.|+++..+. + + +. -+ ....| |. .-+.-++.-..+-...|+++.+|++||=|-...|-..|
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~G 112 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAG 112 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhcc
Confidence 46899999999988653 1 1 21 11 11111 11 00111221111122378889999999999999999999
Q ss_pred CeEEEEecCC
Q 042916 112 MKLHVHVPAD 121 (189)
Q Consensus 112 mKl~I~V~~~ 121 (189)
|.-.|.|...
T Consensus 113 l~G~liV~~~ 122 (541)
T TIGR03388 113 LYGSLIVDVP 122 (541)
T ss_pred ceEEEEEecC
Confidence 9999999864
No 38
>PLN02835 oxidoreductase
Probab=53.56 E-value=1.6e+02 Score=28.39 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=48.5
Q ss_pred CCceEeCCEEEEEecCC-------C-c-eEEeCcccCCC-CCCCCCccccccCCeEEEc-cCCcceEEEeCCCCCCCCCC
Q 042916 44 DKVFKVGDVLVFSYSAS-------N-S-VTEVTKQNFDT-CNISNPLKTYSNGNTTVTL-SAPGDRYFVSGNRLYCFGGM 112 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~-------~-s-V~~V~k~~y~~-C~~~~pi~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 112 (189)
..+++.||+|+.+..+. | | +.+......|. ..+.-||.-..+=...|++ +++|+|||=|-...|-..|+
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 37899999999988664 1 3 44432222222 1111133222222236766 57999999998888888899
Q ss_pred eEEEEecCC
Q 042916 113 KLHVHVPAD 121 (189)
Q Consensus 113 Kl~I~V~~~ 121 (189)
.-.+.|...
T Consensus 141 ~G~lIV~~~ 149 (539)
T PLN02835 141 FGAINVYER 149 (539)
T ss_pred cceeEEeCC
Confidence 988888643
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=52.84 E-value=8.6 Score=28.78 Aligned_cols=23 Identities=39% Similarity=0.366 Sum_probs=10.3
Q ss_pred ChhHH--HHHHHH--HHHhhhhcceeE
Q 042916 1 MAKLL--LLHLLA--VLSIALTSHAAQ 23 (189)
Q Consensus 1 M~~~~--~~~l~~--~~~~~~~~~a~~ 23 (189)
|+++. |+.|++ +|++++.++|++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHH
Confidence 77652 333332 234444555543
No 40
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=52.75 E-value=60 Score=25.07 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=16.7
Q ss_pred CCCCCCCCceEeCCEEEEEecCC
Q 042916 38 LDTWPDDKVFKVGDVLVFSYSAS 60 (189)
Q Consensus 38 Y~~Wa~~~tF~vGD~L~F~y~~~ 60 (189)
......-..+++||.|.|++...
T Consensus 80 v~~~~~l~~lk~G~~V~F~~~~~ 102 (115)
T PRK09838 80 ITPQTKMSEIKTGDKVAFNFVQQ 102 (115)
T ss_pred CCChhhhccCCCCCEEEEEEEEc
Confidence 33444446799999999999753
No 41
>PRK11528 hypothetical protein; Provisional
Probab=51.28 E-value=20 Score=31.27 Aligned_cols=58 Identities=28% Similarity=0.228 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHhhhhcceeEEEecCCCCCc-cCCCCCCCCCCCceEeC--------CEEEEEecCCCc
Q 042916 1 MAKLLLLHLLAVLSIALTSHAAQYFVGDTSGWD-ISSNLDTWPDDKVFKVG--------DVLVFSYSASNS 62 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~a~~y~VGd~~GW~-~~~~Y~~Wa~~~tF~vG--------D~L~F~y~~~~s 62 (189)
|.|.++.++++..+++...++.++. .+|. +..+|-.|.+....+.+ +.|+|++-.++.
T Consensus 1 ~~k~llal~l~a~~~~~~~a~Ad~~----~~w~dis~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~~~~ 67 (254)
T PRK11528 1 MRKSLLALTLLATLTIPALAQAEYK----GGFANISLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGAGFS 67 (254)
T ss_pred CchHHHHHHHHHHHhccchhhhhhh----ccccceeehhhhhhccccccccccCCcCCCcEEEEEccccCC
Confidence 6665555544432222222233332 3575 56778888887555432 278888877654
No 42
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=50.70 E-value=23 Score=26.70 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHHHhhhhcceeEEEecCC
Q 042916 1 MAKLLLLHLLAVLSIALTSHAAQYFVGDT 29 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~a~~y~VGd~ 29 (189)
|.|+++.+.+.+ +++.|+..++.||+.
T Consensus 1 mKk~ll~~~lal--lLtgCatqt~~~~~~ 27 (97)
T PF06291_consen 1 MKKLLLAAALAL--LLTGCATQTFTVGNQ 27 (97)
T ss_pred CcHHHHHHHHHH--HHcccceeEEEeCCC
Confidence 777776665543 336788888889863
No 43
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=44.93 E-value=15 Score=31.88 Aligned_cols=28 Identities=14% Similarity=0.329 Sum_probs=22.1
Q ss_pred hhhcceeEEEecCCCCCccCCCCCCCCC
Q 042916 16 ALTSHAAQYFVGDTSGWDISSNLDTWPD 43 (189)
Q Consensus 16 ~~~~~a~~y~VGd~~GW~~~~~Y~~Wa~ 43 (189)
...-+...|.+++..||.+-++++-|.+
T Consensus 218 ~i~g~~~n~~~~g~~g~e~iP~~dfw~~ 245 (268)
T PF09451_consen 218 LIFGSWYNYNRYGARGFELIPHFDFWRS 245 (268)
T ss_pred hhhhhheeeccCCCCCceecccHhHHHh
Confidence 3455667899999999998888877765
No 44
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=44.58 E-value=30 Score=26.01 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=47.9
Q ss_pred CCCceEeCCEEEEEecCC----C----c-----eEEeCcccCC-------CCC---CCCCccccccCCe--EEEccCCcc
Q 042916 43 DDKVFKVGDVLVFSYSAS----N----S-----VTEVTKQNFD-------TCN---ISNPLKTYSNGNT--TVTLSAPGD 97 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~----~----s-----V~~V~k~~y~-------~C~---~~~pi~~~~~G~~--~v~L~~~G~ 97 (189)
.....+.||.+++...+. | | |+......+. .|. ..+.+.....|.. .+..+.+|.
T Consensus 34 ~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~ 113 (138)
T PF07731_consen 34 PVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGP 113 (138)
T ss_dssp SEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEE
T ss_pred ceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceE
Confidence 346789999998887642 2 1 2222222221 121 1222222233433 556789999
Q ss_pred eEEEeCCCCCCCCCCeEEEEecC
Q 042916 98 RYFVSGNRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 98 ~YFic~v~~HC~~GmKl~I~V~~ 120 (189)
+.|=|-+-.|=..||-..+.|..
T Consensus 114 w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 114 WLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999863
No 45
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=44.22 E-value=20 Score=20.66 Aligned_cols=18 Identities=39% Similarity=0.473 Sum_probs=9.6
Q ss_pred ChhHHHHHHHHHHHhhhh
Q 042916 1 MAKLLLLHLLAVLSIALT 18 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~ 18 (189)
|.|.+++.+++++.++++
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345555556555555444
No 46
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=42.81 E-value=60 Score=31.82 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=49.2
Q ss_pred CceEeCCEEEEEecCC-------C-c-eEEeCcc-----cCCCCCCCCCccccccCCeEEEc-cCCcceEEEeCCCCCCC
Q 042916 45 KVFKVGDVLVFSYSAS-------N-S-VTEVTKQ-----NFDTCNISNPLKTYSNGNTTVTL-SAPGDRYFVSGNRLYCF 109 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~-------~-s-V~~V~k~-----~y~~C~~~~pi~~~~~G~~~v~L-~~~G~~YFic~v~~HC~ 109 (189)
.+++.||+|+.+..+. | | +.+.... .+..| ||.--.+=...|++ ++.|++||=+-...+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 6889999999987653 2 3 4443211 12234 33222222347777 58999999998888888
Q ss_pred CCCeEEEEecCCC
Q 042916 110 GGMKLHVHVPADE 122 (189)
Q Consensus 110 ~GmKl~I~V~~~~ 122 (189)
.|+.-.|.|....
T Consensus 138 ~Gl~GalII~~~~ 150 (596)
T PLN00044 138 AGGYGAITINNRD 150 (596)
T ss_pred CcCeeEEEEcCcc
Confidence 8999999997643
No 47
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=41.47 E-value=30 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=16.2
Q ss_pred ceEeCCEEEEEecCCC--ceEEe
Q 042916 46 VFKVGDVLVFSYSASN--SVTEV 66 (189)
Q Consensus 46 tF~vGD~L~F~y~~~~--sV~~V 66 (189)
+|++||.|.|.+..+. +|+.+
T Consensus 2 ~~~~Ge~v~~~~~~~~~~Yl~l~ 24 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRDGYLYLF 24 (83)
T ss_pred cccCCCEEEEEEEeCCCeEEEEE
Confidence 6899999999998764 35544
No 48
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.94 E-value=34 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.1
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.++.+++|.||..|.. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5677999999999986 67665 9999988753
No 49
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=39.56 E-value=13 Score=24.40 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHHhhhhccee
Q 042916 1 MAKLLLLHLLAVLSIALTSHAA 22 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~a~ 22 (189)
|.|++...++++.++..+|.+.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN 22 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQAN 22 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhc
Confidence 7777655555554444566654
No 50
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=38.17 E-value=53 Score=33.49 Aligned_cols=9 Identities=33% Similarity=0.453 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 042916 140 PLPVQPSSK 148 (189)
Q Consensus 140 ~~p~~ps~~ 148 (189)
++|+++|+.
T Consensus 826 tsptQts~~ 834 (872)
T COG3889 826 TSPTQTSTS 834 (872)
T ss_pred CCCcccccc
Confidence 335555444
No 51
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=37.27 E-value=85 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=16.9
Q ss_pred CCCCCCcccccchhHHHHHHHHHHHHHHHh
Q 042916 157 PTSSGISSYGRSNSVVVAFVSFMASYLLWM 186 (189)
Q Consensus 157 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (189)
|.+++..++-..-.+++.|++....+++|.
T Consensus 27 p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~ 56 (91)
T PF01708_consen 27 PSSSGLPWSRVVEVAIFTLVAVGCLYLAYT 56 (91)
T ss_pred CCCCCCcceeEeeeeehHHHHHHHHHHHHH
Confidence 456666666443334455666566666664
No 52
>PRK10808 outer membrane protein A; Reviewed
Probab=36.79 E-value=29 Score=30.91 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHhhhhcce----eEEEecCCCCCcc
Q 042916 1 MAKLLLLHLLAVLSIALTSHA----AQYFVGDTSGWDI 34 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~a----~~y~VGd~~GW~~ 34 (189)
|.|+++..+++++++...+.+ ..|.||+..||..
T Consensus 1 Mkk~~~~~~~~~~~~s~~a~a~~~~~g~YvG~~~G~~~ 38 (351)
T PRK10808 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGGKLGWSQ 38 (351)
T ss_pred CcchhhHHHHHHHHHHhhhhhcccCCcEEEecccccee
Confidence 778654433333222222222 1488999988874
No 53
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=36.42 E-value=96 Score=24.92 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=24.3
Q ss_pred CceEeCCEEEEEecC------CCceEEeCcccCCCCCCCC
Q 042916 45 KVFKVGDVLVFSYSA------SNSVTEVTKQNFDTCNISN 78 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~------~~sV~~V~k~~y~~C~~~~ 78 (189)
...+-||++++.-.. +|..+.+++..+-+|+-..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 468999999986642 2334556888888998743
No 54
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=34.94 E-value=53 Score=27.08 Aligned_cols=30 Identities=17% Similarity=0.095 Sum_probs=23.2
Q ss_pred EEEccCCcceEEEeCCCCCCCC---CCeEEEEecC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFG---GMKLHVHVPA 120 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~ 120 (189)
.+..+++|.||..|.. -|.. .|.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4567899999999985 5554 4998888765
No 55
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=34.52 E-value=28 Score=24.14 Aligned_cols=9 Identities=33% Similarity=1.080 Sum_probs=7.2
Q ss_pred HHHHHHhhh
Q 042916 180 ASYLLWMVQ 188 (189)
Q Consensus 180 ~~~~~~~~~ 188 (189)
+-+..||.|
T Consensus 43 yGFiVWM~Q 51 (62)
T COG4459 43 YGFIVWMFQ 51 (62)
T ss_pred hhHHHHHHH
Confidence 467789998
No 56
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.15 E-value=53 Score=28.04 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=24.0
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPA 120 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 120 (189)
.++.+++|.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5677999999999985 56554 998888865
No 57
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=34.13 E-value=71 Score=27.58 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=13.9
Q ss_pred CCCCCCceEeCCEEEEEec
Q 042916 40 TWPDDKVFKVGDVLVFSYS 58 (189)
Q Consensus 40 ~Wa~~~tF~vGD~L~F~y~ 58 (189)
-..+.+-.+|||.|.-.-.
T Consensus 62 Lf~D~rA~~VGDiiTV~i~ 80 (230)
T PRK12701 62 LFETPRARHPGDILTVYLI 80 (230)
T ss_pred cccccccccCCCEEEEEEE
Confidence 4456788899999976553
No 58
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=32.94 E-value=43 Score=23.69 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=11.1
Q ss_pred CCCceEeCCEEEEEecC
Q 042916 43 DDKVFKVGDVLVFSYSA 59 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~ 59 (189)
..+.+++||.++|++..
T Consensus 70 ~~n~L~~GD~~~F~~~~ 86 (100)
T PF02362_consen 70 RDNGLKEGDVCVFELIG 86 (100)
T ss_dssp HHCT--TT-EEEEEE-S
T ss_pred HHcCCCCCCEEEEEEec
Confidence 45789999999999976
No 59
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.80 E-value=57 Score=27.74 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=24.5
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.+..+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677999999999985 56655 9988888753
No 60
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=32.55 E-value=56 Score=27.91 Aligned_cols=31 Identities=26% Similarity=0.292 Sum_probs=24.9
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.++.+++|.|+-.|.+ .|..| |++.|.|.+.
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5778999999999985 56654 9999988753
No 61
>PLN02168 copper ion binding / pectinesterase
Probab=31.81 E-value=1.4e+02 Score=28.80 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=49.3
Q ss_pred CCceEeCCEEEEEecCC--C------c-eEEeCcccCCC-CCCCCCccccccCCeEEEc-cCCcceEEEeCCCCCCCCCC
Q 042916 44 DKVFKVGDVLVFSYSAS--N------S-VTEVTKQNFDT-CNISNPLKTYSNGNTTVTL-SAPGDRYFVSGNRLYCFGGM 112 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~--~------s-V~~V~k~~y~~-C~~~~pi~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~Gm 112 (189)
..+++.||+|+.+..+. + | +.+......|. ..+.-||.-..+=...|++ +++|++||=+-...+=..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 37899999999999763 1 3 43332211222 1111234322222347787 47999999987777767799
Q ss_pred eEEEEecCCC
Q 042916 113 KLHVHVPADE 122 (189)
Q Consensus 113 Kl~I~V~~~~ 122 (189)
.-.+.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999997643
No 62
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.51 E-value=58 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=24.5
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.++.+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5677999999999985 56654 9998888653
No 63
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.04 E-value=68 Score=27.33 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=24.4
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.+..+++|.||-.|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVPL 216 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcCH
Confidence 5677999999999986 56554 9999888653
No 64
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=30.16 E-value=77 Score=27.23 Aligned_cols=19 Identities=26% Similarity=0.587 Sum_probs=14.0
Q ss_pred CCCCCCceEeCCEEEEEec
Q 042916 40 TWPDDKVFKVGDVLVFSYS 58 (189)
Q Consensus 40 ~Wa~~~tF~vGD~L~F~y~ 58 (189)
-..+.+-.+|||.|.-.-.
T Consensus 58 Lf~D~rA~~VGDiiTV~i~ 76 (221)
T PRK12407 58 LLQDRRAYRVGDILTVILD 76 (221)
T ss_pred ccccccccCCCCEEEEEEE
Confidence 4456788899999976654
No 65
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=30.10 E-value=41 Score=24.25 Aligned_cols=10 Identities=10% Similarity=0.611 Sum_probs=8.3
Q ss_pred CCCCCCCCCC
Q 042916 35 SSNLDTWPDD 44 (189)
Q Consensus 35 ~~~Y~~Wa~~ 44 (189)
.+||..|.+.
T Consensus 46 ~p~Y~PWf~p 55 (74)
T PF02553_consen 46 DPDYEPWFEP 55 (74)
T ss_pred CCCCCccccc
Confidence 5789999886
No 66
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.85 E-value=67 Score=27.46 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=24.0
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.+..+++|.||..|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeCH
Confidence 5677999999999986 56554 8888887653
No 67
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.83 E-value=59 Score=27.80 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=23.9
Q ss_pred EEEccCCcceEEEeCCCCCCCC---CCeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFG---GMKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 121 (189)
.+..+++|.||..|+. -|.. .|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEECH
Confidence 5667999999999986 5554 48988888653
No 68
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=29.83 E-value=40 Score=20.56 Aligned_cols=18 Identities=28% Similarity=0.776 Sum_probs=14.0
Q ss_pred CCCCCCCCceEeCCEEEE
Q 042916 38 LDTWPDDKVFKVGDVLVF 55 (189)
Q Consensus 38 Y~~Wa~~~tF~vGD~L~F 55 (189)
|..|..++.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888887788998875
No 69
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=29.75 E-value=1.3e+02 Score=26.80 Aligned_cols=22 Identities=36% Similarity=0.387 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHHhhhhccee
Q 042916 1 MAKLLLLHLLAVLSIALTSHAA 22 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~a~ 22 (189)
|++.|+..|+++++++..+.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~a~A~ 22 (292)
T PRK13861 1 MIKKLFLTLACLLFAAIGALAE 22 (292)
T ss_pred ChhHHHHHHHHHHHhccchhHh
Confidence 6777766666655444444444
No 70
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=29.51 E-value=47 Score=23.83 Aligned_cols=39 Identities=23% Similarity=0.561 Sum_probs=30.6
Q ss_pred eeEEEecCCC---CCccC-----------CCCCCCCCCCceEeCCEEEEEecC
Q 042916 21 AAQYFVGDTS---GWDIS-----------SNLDTWPDDKVFKVGDVLVFSYSA 59 (189)
Q Consensus 21 a~~y~VGd~~---GW~~~-----------~~Y~~Wa~~~tF~vGD~L~F~y~~ 59 (189)
...|+||+.. .|+.. .+|..|.....+..|..+.|||--
T Consensus 16 e~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 16 ESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 3578899963 59862 157999999999999999999953
No 71
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.26 E-value=74 Score=27.13 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=24.4
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.+..+++|.||..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5677999999999985 56655 9998888653
No 72
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=29.16 E-value=1.1e+02 Score=29.81 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=44.1
Q ss_pred CCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCC----Ccccc-ccCCe-EEEccCCcceEEEeC
Q 042916 39 DTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISN----PLKTY-SNGNT-TVTLSAPGDRYFVSG 103 (189)
Q Consensus 39 ~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~----pi~~~-~~G~~-~v~L~~~G~~YFic~ 103 (189)
..=.+.++|.--|.+.|+|+.. ..++.+...+.|.-|.+- .+..+ .+|++ .|+|.+.|+.|=++=
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW 278 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE
Confidence 3345679999999999999974 557776667766655432 11111 34665 789998888776653
No 73
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=28.80 E-value=56 Score=26.11 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=17.7
Q ss_pred EEEecCCCCCccCCCCCCCC-CCCceEeCCEEEEE
Q 042916 23 QYFVGDTSGWDISSNLDTWP-DDKVFKVGDVLVFS 56 (189)
Q Consensus 23 ~y~VGd~~GW~~~~~Y~~Wa-~~~tF~vGD~L~F~ 56 (189)
..+|||+.|=. +..-|- ....|+.||.|.|.
T Consensus 40 ~~kVaD~TgsI---~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 40 SCKVADETGSI---NISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEecccceE---EEEEecCcCcccCCccEEEec
Confidence 44788876611 111121 34688888888764
No 74
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=28.64 E-value=2.7e+02 Score=27.35 Aligned_cols=39 Identities=21% Similarity=0.110 Sum_probs=30.8
Q ss_pred ccCCe--EEEccCCcceEEEeCCCCCCCCCCeEEEEecCCC
Q 042916 84 SNGNT--TVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADE 122 (189)
Q Consensus 84 ~~G~~--~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 122 (189)
.+|-. .|..|.||..+|=|-+..|=-.||.+.+.|.+..
T Consensus 497 ~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~ 537 (596)
T PLN00044 497 PGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPE 537 (596)
T ss_pred CCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCC
Confidence 45555 5677999999998988788667999999988654
No 75
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=28.05 E-value=1.3e+02 Score=24.15 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=12.3
Q ss_pred CceEeCCEEEEEecCC
Q 042916 45 KVFKVGDVLVFSYSAS 60 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~ 60 (189)
..++.||.++|+...+
T Consensus 59 ~~~~~GDIVvf~~~~~ 74 (158)
T TIGR02228 59 NDIQVGDVITYKSPGF 74 (158)
T ss_pred CCCCCCCEEEEEECCC
Confidence 4678888888887664
No 76
>PLN02191 L-ascorbate oxidase
Probab=27.95 E-value=1.4e+02 Score=28.91 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=47.7
Q ss_pred CCceEeCCEEEEEecCC---C------c-eEEeCcccCCC-CC-CCCCccccccCCeEEEccCCcceEEEeCCCCCCCCC
Q 042916 44 DKVFKVGDVLVFSYSAS---N------S-VTEVTKQNFDT-CN-ISNPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGG 111 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~---~------s-V~~V~k~~y~~-C~-~~~pi~~~~~G~~~v~L~~~G~~YFic~v~~HC~~G 111 (189)
..+++.||.|+.+..+. + | +.+.....+|. -. +.-+|.-..+=...|+++++|+|||=|-...+-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 36889999999888653 1 2 32211111121 00 001222111122378889999999999998888999
Q ss_pred CeEEEEecC
Q 042916 112 MKLHVHVPA 120 (189)
Q Consensus 112 mKl~I~V~~ 120 (189)
+.-.+.|..
T Consensus 135 l~G~liV~~ 143 (574)
T PLN02191 135 LYGSLIVDV 143 (574)
T ss_pred CEEEEEEcc
Confidence 999999964
No 77
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=27.79 E-value=1.5e+02 Score=28.94 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=46.5
Q ss_pred CCceEeCCEEEEEecCCC----ceE----EeCcccCCC-CCCC-CCccccccCCeEEEccCCcceEEEeCCCCCCCCCCe
Q 042916 44 DKVFKVGDVLVFSYSASN----SVT----EVTKQNFDT-CNIS-NPLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMK 113 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~~----sV~----~V~k~~y~~-C~~~-~pi~~~~~G~~~v~L~~~G~~YFic~v~~HC~~GmK 113 (189)
..+++.||.|+.++.+.- ++. .+.. ..|. ...+ .+|.-..+-...|++..+|+|||=|-...+=+.|+.
T Consensus 77 ~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~-~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~ 155 (587)
T TIGR01480 77 LLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF-QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY 155 (587)
T ss_pred eEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc-cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccce
Confidence 468999999999997641 121 1211 1111 1111 122111112237788999999999987777778999
Q ss_pred EEEEecCC
Q 042916 114 LHVHVPAD 121 (189)
Q Consensus 114 l~I~V~~~ 121 (189)
-.|.|...
T Consensus 156 G~lIV~~~ 163 (587)
T TIGR01480 156 GPLIIDPA 163 (587)
T ss_pred EEEEECCC
Confidence 88888643
No 78
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=27.64 E-value=76 Score=27.32 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=24.8
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.++.+++|.||..|.. .|..| |++.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5677999999999985 66665 9988888753
No 79
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=27.07 E-value=81 Score=26.50 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=25.5
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.++.+++|.||-.|+. -|..| |++.|.|.+.
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 6778999999999985 67665 9999998754
No 80
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=36 Score=31.34 Aligned_cols=14 Identities=50% Similarity=0.748 Sum_probs=12.0
Q ss_pred ceEeCCEEEEEecC
Q 042916 46 VFKVGDVLVFSYSA 59 (189)
Q Consensus 46 tF~vGD~L~F~y~~ 59 (189)
..+.||+|+|.|+.
T Consensus 134 ~aq~gD~LvfHYSG 147 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSG 147 (362)
T ss_pred cCCCCCEEEEEecC
Confidence 35789999999986
No 81
>PLN02792 oxidoreductase
Probab=26.72 E-value=1.8e+02 Score=28.08 Aligned_cols=77 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred ceEeCCEEEEEecCC-------C-c-eEEeCcccCCC-CCCCCCccccccCCeEEEc-cCCcceEEEeCCCCCCCCCCeE
Q 042916 46 VFKVGDVLVFSYSAS-------N-S-VTEVTKQNFDT-CNISNPLKTYSNGNTTVTL-SAPGDRYFVSGNRLYCFGGMKL 114 (189)
Q Consensus 46 tF~vGD~L~F~y~~~-------~-s-V~~V~k~~y~~-C~~~~pi~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~GmKl 114 (189)
+++.||+|+.+..+. | | +.+......|. --+.-||.-..+=...|++ +++|+|||=+-...+-..|+.-
T Consensus 50 ~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G 129 (536)
T PLN02792 50 RSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYG 129 (536)
T ss_pred EEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhccccc
Q ss_pred EEEecCCC
Q 042916 115 HVHVPADE 122 (189)
Q Consensus 115 ~I~V~~~~ 122 (189)
.+.|....
T Consensus 130 ~liI~~~~ 137 (536)
T PLN02792 130 SLRIYSLP 137 (536)
T ss_pred ceEEeCCc
No 82
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=26.51 E-value=35 Score=23.73 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=14.8
Q ss_pred CCCCCCCCceEeCCEEEEEecCC
Q 042916 38 LDTWPDDKVFKVGDVLVFSYSAS 60 (189)
Q Consensus 38 Y~~Wa~~~tF~vGD~L~F~y~~~ 60 (189)
+..-..-..+++||.|.|.+...
T Consensus 34 v~~~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 34 VADPVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp --TTSEESS-STT-EEEEEEEEE
T ss_pred cCChhhhhcCCCCCEEEEEEEEC
Confidence 34444557899999999999864
No 83
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=26.17 E-value=53 Score=23.76 Aligned_cols=27 Identities=19% Similarity=0.506 Sum_probs=21.5
Q ss_pred CceEeCCEEEEEecCCC--ceEEeCcccC
Q 042916 45 KVFKVGDVLVFSYSASN--SVTEVTKQNF 71 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~~--sV~~V~k~~y 71 (189)
+++++||++.--|.+-| +|..+.+.+.
T Consensus 4 ~~~~~GD~VyViYrNPHt~~VanIqeAei 32 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPHTQDVANIQEAEI 32 (75)
T ss_pred cccCCCCEEEEEEcCCCCccccccchhhe
Confidence 78999999999998876 4877766654
No 84
>PRK10861 signal peptidase I; Provisional
Probab=25.35 E-value=2.1e+02 Score=25.98 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=13.7
Q ss_pred CCCceEeCCEEEEEecCC
Q 042916 43 DDKVFKVGDVLVFSYSAS 60 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~ 60 (189)
.....+-||.++|++...
T Consensus 122 ~~~~p~RGDIVVF~~P~~ 139 (324)
T PRK10861 122 ETGHPKRGDIVVFKYPED 139 (324)
T ss_pred ccCCCCCCCEEEEecCCC
Confidence 335678899999999653
No 85
>PLN02991 oxidoreductase
Probab=25.19 E-value=6.3e+02 Score=24.45 Aligned_cols=123 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhcc-----eeEEEecCCCC-----CccCCCCCCCCCCCceEeCCEEEEEecCC-------C-c-
Q 042916 2 AKLLLLHLLAVLSIALTSH-----AAQYFVGDTSG-----WDISSNLDTWPDDKVFKVGDVLVFSYSAS-------N-S- 62 (189)
Q Consensus 2 ~~~~~~~l~~~~~~~~~~~-----a~~y~VGd~~G-----W~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-------~-s- 62 (189)
|-+|++++++..+.+.... -.++.....+| |.++-.|. --..+++.||.|+.+..+. | |
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~P--GP~I~~~~GD~v~V~V~N~L~~~ttiHWHG 87 (543)
T PLN02991 10 AMILGLLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFP--GPDIISVTNDNLIINVFNHLDEPFLISWSG 87 (543)
T ss_pred HHHHHHHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCC--CCcEEEECCCEEEEEecCCCCCCccEEECC
Q ss_pred eEEeCcccCCC--CCCCCCccccccCCeEEEc-cCCcceEEEeCCCCCCCCCCeEEEEecCCCCCCCC
Q 042916 63 VTEVTKQNFDT--CNISNPLKTYSNGNTTVTL-SAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPI 127 (189)
Q Consensus 63 V~~V~k~~y~~--C~~~~pi~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~p~ 127 (189)
+.+......|. = +.-||.-..+=...|++ +++|+|||=+-...+-..|..-.+.|......+.+
T Consensus 88 i~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p 154 (543)
T PLN02991 88 IRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVP 154 (543)
T ss_pred cccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcc
No 86
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=24.97 E-value=55 Score=25.52 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=15.8
Q ss_pred ceEeCCEEEEEecCCCceEE
Q 042916 46 VFKVGDVLVFSYSASNSVTE 65 (189)
Q Consensus 46 tF~vGD~L~F~y~~~~sV~~ 65 (189)
.-++||.|+|+.....||-.
T Consensus 73 ~p~~GDiv~f~~~~~~HVGi 92 (129)
T TIGR02594 73 KPAYGCIAVKRRGGGGHVGF 92 (129)
T ss_pred CCCccEEEEEECCCCCEEEE
Confidence 46899999999877667644
No 87
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=24.72 E-value=72 Score=26.36 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHHHHhhhhcceeEEEe
Q 042916 1 MAKLLLLHLLAVLSIALTSHAAQYFV 26 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~a~~y~V 26 (189)
|+|+++.+++.+++++..+.|.++-+
T Consensus 1 m~k~~~a~~~~l~~~s~~a~A~~~~~ 26 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASANAISLSL 26 (180)
T ss_pred CchHHHHHHHHHHHHhhhhheeecce
Confidence 88888777766666666667765543
No 88
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.66 E-value=88 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.1
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.+..+++|.||..|+. -|..| |.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 5677999999999985 56554 8888887653
No 89
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=24.47 E-value=65 Score=22.75 Aligned_cols=37 Identities=19% Similarity=0.574 Sum_probs=27.5
Q ss_pred eEEEecCC---CCCccC-------CCCCCCCCCCceEeCCEEEEEec
Q 042916 22 AQYFVGDT---SGWDIS-------SNLDTWPDDKVFKVGDVLVFSYS 58 (189)
Q Consensus 22 ~~y~VGd~---~GW~~~-------~~Y~~Wa~~~tF~vGD~L~F~y~ 58 (189)
..|++|+. ..|+.. .++..|.....+..|+.+.|||-
T Consensus 16 ~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 16 NVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred EEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 45788874 368742 35678888788888999999995
No 90
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=24.37 E-value=86 Score=20.29 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=8.2
Q ss_pred HHHHHHHhhhC
Q 042916 179 MASYLLWMVQA 189 (189)
Q Consensus 179 ~~~~~~~~~~~ 189 (189)
.+-+..||.|.
T Consensus 26 ~YGF~vWm~Q~ 36 (42)
T TIGR02973 26 GYGFAVWMYQI 36 (42)
T ss_pred HHHHHHHHHHH
Confidence 45678899983
No 91
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=24.30 E-value=84 Score=20.81 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.2
Q ss_pred HHHHHHHhhhC
Q 042916 179 MASYLLWMVQA 189 (189)
Q Consensus 179 ~~~~~~~~~~~ 189 (189)
.+-+.+||.|.
T Consensus 31 ~YGF~vWm~Q~ 41 (47)
T TIGR02972 31 GYGFIIWMIQA 41 (47)
T ss_pred HHHHHHHHHHH
Confidence 45678899983
No 92
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=23.84 E-value=1.1e+02 Score=26.39 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=12.4
Q ss_pred CCCCCceEeCCEEEEEe
Q 042916 41 WPDDKVFKVGDVLVFSY 57 (189)
Q Consensus 41 Wa~~~tF~vGD~L~F~y 57 (189)
.+..+-.+|||.|.-.-
T Consensus 60 f~D~RA~~VGDivTV~i 76 (236)
T PRK12696 60 FADSRARRVGDIVLVKI 76 (236)
T ss_pred ccccccccCCCEEEEEE
Confidence 34567889999997554
No 93
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=23.43 E-value=80 Score=24.05 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=17.8
Q ss_pred CCCceEeCCEEEEEecCCCceEE
Q 042916 43 DDKVFKVGDVLVFSYSASNSVTE 65 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~sV~~ 65 (189)
.++.+++||.|.+.|....-.++
T Consensus 45 pS~~VK~GD~l~i~~~~~~~~v~ 67 (100)
T COG1188 45 PSKEVKVGDILTIRFGNKEFTVK 67 (100)
T ss_pred cccccCCCCEEEEEeCCcEEEEE
Confidence 45789999999999987644333
No 94
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=23.42 E-value=2.2e+02 Score=27.12 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred ceEeCCEEEEEecCC-------C-c-eEEeCcccCCC--CCCCCCccccccCCeEEEc-cCCcceEEEeCCCCCCCCCCe
Q 042916 46 VFKVGDVLVFSYSAS-------N-S-VTEVTKQNFDT--CNISNPLKTYSNGNTTVTL-SAPGDRYFVSGNRLYCFGGMK 113 (189)
Q Consensus 46 tF~vGD~L~F~y~~~-------~-s-V~~V~k~~y~~--C~~~~pi~~~~~G~~~v~L-~~~G~~YFic~v~~HC~~GmK 113 (189)
+++.||+|+.+..+. | | +.+......|. .-+.-+|.-..+-...|++ +.+|+|||=|-. .+...|+.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI-SWLRATVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc-hhhhccce
Q ss_pred EEEEecCCC
Q 042916 114 LHVHVPADE 122 (189)
Q Consensus 114 l~I~V~~~~ 122 (189)
-.|.|....
T Consensus 116 G~lIV~~~~ 124 (539)
T TIGR03389 116 GAIVILPKP 124 (539)
T ss_pred EEEEEcCCC
No 95
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.89 E-value=35 Score=28.26 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.5
Q ss_pred CceEeCCEEEEEecCC
Q 042916 45 KVFKVGDVLVFSYSAS 60 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~ 60 (189)
..+++||.++|+....
T Consensus 76 ~p~~vGdivVf~vegR 91 (180)
T KOG3342|consen 76 DPIRVGDIVVFKVEGR 91 (180)
T ss_pred CcceeccEEEEEECCc
Confidence 3589999999999854
No 96
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=22.80 E-value=2.2e+02 Score=18.40 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=27.1
Q ss_pred cCCeEEEccCCcceEEEeCCCCCCCCCCeEEEEecCC
Q 042916 85 NGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 85 ~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 121 (189)
.++..+-||..|.+.=|=--++ |+-||++.+.....
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~-~~vG~eI~~~~~~~ 39 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPG-MEVGQEIEFDEKDI 39 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCC-CcccCEEEEechhh
Confidence 4567788888887766655555 99999999987553
No 97
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=22.75 E-value=51 Score=28.76 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.0
Q ss_pred eEEEccCCcceEEEeCCCCCCCCCC
Q 042916 88 TTVTLSAPGDRYFVSGNRLYCFGGM 112 (189)
Q Consensus 88 ~~v~L~~~G~~YFic~v~~HC~~Gm 112 (189)
+.|.++.-|-+-|+|+..+||++-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 4677788899999999999998753
No 98
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=22.55 E-value=1.6e+02 Score=23.66 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=37.3
Q ss_pred CCCccCCC----CCCCCCCCceEeCCEEEEEecCCCceEEeCcccCCCC---------CCCCCccccccC-----CeEEE
Q 042916 30 SGWDISSN----LDTWPDDKVFKVGDVLVFSYSASNSVTEVTKQNFDTC---------NISNPLKTYSNG-----NTTVT 91 (189)
Q Consensus 30 ~GW~~~~~----Y~~Wa~~~tF~vGD~L~F~y~~~~sV~~V~k~~y~~C---------~~~~pi~~~~~G-----~~~v~ 91 (189)
+.-++..+ ...|.=.|.+..|.+++-+..= +.+.+|+.= +..+ ...+.+| |+..+
T Consensus 23 deLDIQQ~YpF~v~tmPVpk~I~~GeTvEIR~~l------~reG~y~~t~Y~iRYFQ~dGkG-~L~~~~g~~~~pND~Y~ 95 (137)
T PF12988_consen 23 DELDIQQAYPFTVETMPVPKKIKKGETVEIRCEL------KREGNYADTRYTIRYFQPDGKG-TLRMDDGTVLLPNDRYP 95 (137)
T ss_dssp TTS------SEEEEE----SS--TTEEEEEEEEE------EESS--SS---EEEEE-SSS-E-EEEETTS-EE-TTSEEE
T ss_pred CccceeecCCcEEEEeccccccCCCCEEEEEEEE------ecCceecccEEEEEEEeecCCE-EEEecCCcEecccccee
Confidence 34555433 4678888999999999876631 112222211 1111 1223444 56778
Q ss_pred ccCCcceEEEeCCCCCCCCCCeEEEEecCC
Q 042916 92 LSAPGDRYFVSGNRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 92 L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 121 (189)
|++--.+-|+.+ ||..-|.+.|-|...
T Consensus 96 L~~~~FRLYYTS---~s~~~q~idv~veDn 122 (137)
T PF12988_consen 96 LEKEVFRLYYTS---RSDDQQTIDVYVEDN 122 (137)
T ss_dssp -S-SEEEEEEEE----SSS-EEEEEEEEET
T ss_pred cCcCEEEEEEec---CCCCCceeEEEEEeC
Confidence 887665555544 788889999988764
No 99
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.34 E-value=1e+02 Score=26.29 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=23.6
Q ss_pred EEEccCCcceEEEeCCCCCCCC---CCeEEEEecC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFG---GMKLHVHVPA 120 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~ 120 (189)
.+..+++|.+|..|+. -|.. .|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 5677999999999986 5554 4998888765
No 100
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=22.21 E-value=60 Score=23.72 Aligned_cols=37 Identities=16% Similarity=0.447 Sum_probs=28.0
Q ss_pred eEEEecCCC---CCccC-------CCCCCCCCCCceEeCCEEEEEec
Q 042916 22 AQYFVGDTS---GWDIS-------SNLDTWPDDKVFKVGDVLVFSYS 58 (189)
Q Consensus 22 ~~y~VGd~~---GW~~~-------~~Y~~Wa~~~tF~vGD~L~F~y~ 58 (189)
..|++|+.. .|+.. .+|..|.....+..|..|.|||-
T Consensus 17 ~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 17 SVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred eEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 457888853 58742 35777988888889999999994
No 101
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.38 E-value=1e+02 Score=22.30 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=11.7
Q ss_pred CceEeCCEEEEEecCCCceE
Q 042916 45 KVFKVGDVLVFSYSASNSVT 64 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~~sV~ 64 (189)
.++++||.|.|..+....+.
T Consensus 41 ~~L~pGq~l~f~~d~~g~L~ 60 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDEDGQLT 60 (85)
T ss_dssp GG--TT-EEEEEE-TTS-EE
T ss_pred hhCCCCCEEEEEECCCCCEE
Confidence 47999999999998754443
No 102
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.36 E-value=1e+02 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=24.3
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~~ 121 (189)
.+..+++|.||..|.. -|..| |.+.|.|.+.
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 5678999999999986 56554 8888888653
No 103
>PF05257 CHAP: CHAP domain; InterPro: IPR007921 The CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain is a region between 110 and 140 amino acids that is found in proteins from bacteria, bacteriophages, archaea and eukaryotes of the Trypanosomidae family. Many of these proteins are uncharacterised, but it has been proposed that they may function mainly in peptidoglycan hydrolysis. The CHAP domain is found in a wide range of protein architectures; it is commonly associated with bacterial type SH3 domains and with several families of amidase domains. It has been suggested that CHAP domain containing proteins utilise a catalytic cysteine residue in a nucleophilic-attack mechanism [, ]. The CHAP domain contains two invariant residues, a cysteine and a histidine. These residues form part of the putative active site of CHAP domain containing proteins. Secondary structure predictions show that the CHAP domain belongs to the alpha + beta structural class, with the N-terminal half largely containing predicted alpha helices and the C-terminal half principally composed of predicted beta strands [, ]. Some proteins known to contain a CHAP domain are listed below: Bacterial and trypanosomal glutathionylspermidine amidases. A variety of bacterial autolysins. A Nocardia aerocolonigenes putative esterase. Streptococcus pneumoniae choline-binding protein D. Methanosarcina mazei protein MM2478, a putative chloride channel. Several phage-encoded peptidoglycan hydrolases. Cysteine peptidases belonging to MEROPS peptidase family C51 (D-alanyl-glycyl endopeptidase, clan CA). ; PDB: 2LRJ_A 2VPM_B 2VOB_B 2VPS_A 2K3A_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B ....
Probab=21.29 E-value=51 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=14.8
Q ss_pred CccCCCCCCC--CCCCceEeCCEEEEEe
Q 042916 32 WDISSNLDTW--PDDKVFKVGDVLVFSY 57 (189)
Q Consensus 32 W~~~~~Y~~W--a~~~tF~vGD~L~F~y 57 (189)
|........| ....+-++||.++|+.
T Consensus 46 ~~~~~~~~~~~~~~~~~P~~Gdivv~~~ 73 (124)
T PF05257_consen 46 WASSAGAQGYQNSTGSTPQPGDIVVWDS 73 (124)
T ss_dssp CHHCCCHCCEETEECS---TTEEEEEEE
T ss_pred HHHHHHhcccccccCcccccceEEEecc
Confidence 4433333444 6678899999999964
No 104
>PHA03387 gp37 spherodin-like protein; Provisional
Probab=21.16 E-value=5.8e+02 Score=22.64 Aligned_cols=45 Identities=29% Similarity=0.465 Sum_probs=28.4
Q ss_pred ecCCCCCccCCCCCCCCCCCceE-----eCCEEEEEecC--CCc--eEE--eCcccCCC
Q 042916 26 VGDTSGWDISSNLDTWPDDKVFK-----VGDVLVFSYSA--SNS--VTE--VTKQNFDT 73 (189)
Q Consensus 26 VGd~~GW~~~~~Y~~Wa~~~tF~-----vGD~L~F~y~~--~~s--V~~--V~k~~y~~ 73 (189)
-||..|-+.+. .+|.... +. .+..+.|+|.. -|+ =.| |+|.+||.
T Consensus 123 fgdksGLD~p~--~~W~~T~-i~~~~~~~~g~~tf~~~~TA~H~psyfe~YITK~gwdp 178 (267)
T PHA03387 123 FGDKSGMDEPF--PNWRPDT-LYKNKYQSGHQTNLHFCPTAVHEPSYFEVFVTKPEYDY 178 (267)
T ss_pred ccccccccCCC--CCCccee-ecccccCCCCceEEEEeeecccCCCeEEEEECCCCCCC
Confidence 35566777764 6787753 33 35556777654 463 344 59999997
No 105
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=21.16 E-value=79 Score=25.33 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCCceEeCCEEEEEecCCCceEEeCcccC
Q 042916 43 DDKVFKVGDVLVFSYSASNSVTEVTKQNF 71 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~sV~~V~k~~y 71 (189)
....+.+|-.|+-.|....|.+.|.++.|
T Consensus 77 ~~~~~~pGt~LvREw~G~~h~V~V~~dGf 105 (136)
T PF11149_consen 77 DDRRPAPGTRLVREWNGREHEVTVLEDGF 105 (136)
T ss_pred cccCCCCCcEEEEEECCEEEEEEEeCCCE
Confidence 45789999999999998877555544444
No 106
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.02 E-value=1.2e+02 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=24.4
Q ss_pred EEEccCCcceEEEeCCCCCCCC---CCeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFG---GMKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~---GmKl~I~V~~~ 121 (189)
.+..+++|.||-.|.. .|.. .|.+.|.|.+.
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVSL 250 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEECH
Confidence 5678999999999985 5555 49999988653
No 107
>COG1430 Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=53 Score=25.90 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.9
Q ss_pred CCCCCCceEeCCEEEEEecC
Q 042916 40 TWPDDKVFKVGDVLVFSYSA 59 (189)
Q Consensus 40 ~Wa~~~tF~vGD~L~F~y~~ 59 (189)
.|++..+++|||.|.|..-.
T Consensus 104 G~~~~~~i~vGd~v~~~~~~ 123 (126)
T COG1430 104 GWAARLGIKVGDRVEFRPLG 123 (126)
T ss_pred CchhhcCCccCCEEEecccC
Confidence 48899999999999987643
No 108
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=20.91 E-value=1e+02 Score=21.06 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.0
Q ss_pred HHHHHHHhhhC
Q 042916 179 MASYLLWMVQA 189 (189)
Q Consensus 179 ~~~~~~~~~~~ 189 (189)
.+-+..||.|.
T Consensus 39 ~YGF~VWm~Q~ 49 (56)
T PF06796_consen 39 GYGFIVWMYQI 49 (56)
T ss_pred HHHHHHHHHHH
Confidence 35677899984
No 109
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=20.40 E-value=1.3e+02 Score=23.99 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=25.3
Q ss_pred EEEccCCcceEEEeCCCCCCCCCCeEEEEecCCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPADE 122 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~~ 122 (189)
.+++.. |..|-|.. ..|..||++...+...+
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g 130 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAG 130 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecC
Confidence 467665 99999986 69999999999887653
No 110
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=20.33 E-value=1.5e+02 Score=23.15 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.1
Q ss_pred CceEeCCEEEEEecCCC-ceEEeC
Q 042916 45 KVFKVGDVLVFSYSASN-SVTEVT 67 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~~-sV~~V~ 67 (189)
..+++||.|..+...++ ..++|+
T Consensus 71 ~~l~~GD~I~v~~~~g~~~~Y~V~ 94 (144)
T cd05829 71 GDLRKGDKVEVTRADGQTATFRVD 94 (144)
T ss_pred hcCCCCCEEEEEECCCCEEEEEEe
Confidence 57899999999996554 356653
No 111
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=20.31 E-value=88 Score=20.53 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=8.2
Q ss_pred ChhHHHHH-HHHHHHhhh
Q 042916 1 MAKLLLLH-LLAVLSIAL 17 (189)
Q Consensus 1 M~~~~~~~-l~~~~~~~~ 17 (189)
|.|++.++ |+++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (92)
T TIGR02052 1 MKKLATLLALFVLTSLPA 18 (92)
T ss_pred ChhHHHHHHHHHHhcchh
Confidence 67776333 333334433
No 112
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=20.27 E-value=1.9e+02 Score=17.03 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.4
Q ss_pred EEEccCCcceEEEeCCCCCCCCCCe
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGGMK 113 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~GmK 113 (189)
...+++.|.-||=.++...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4556778999999999999998864
No 113
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.12 E-value=86 Score=23.67 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHHhhhhc
Q 042916 1 MAKLLLLHLLAVLSIALTS 19 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~ 19 (189)
|.|++++++++++.+.+.+
T Consensus 1 MKk~~ll~~~ll~s~~a~A 19 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAFA 19 (114)
T ss_pred CchHHHHHHHHHHHHHHhh
Confidence 7888877766655443333
Done!