Query 042916
Match_columns 189
No_of_seqs 148 out of 849
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 19:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 1.8E-42 6.2E-47 273.7 3.1 104 20-123 2-111 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.5E-40 5.1E-45 253.1 4.2 103 20-122 1-106 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 1.3E-39 4.3E-44 250.5 5.0 102 22-123 2-108 (116)
4 2cbp_A Cucumber basic protein; 100.0 5.1E-38 1.7E-42 234.1 7.0 95 22-119 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 5.7E-34 2E-38 210.4 8.2 90 22-119 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 4.5E-11 1.5E-15 92.0 8.4 94 20-119 15-139 (140)
7 2cal_A Rusticyanin; iron respi 99.0 2.8E-10 9.4E-15 90.1 6.4 75 44-119 62-154 (154)
8 1bxv_A Plastocyanin; copper pr 99.0 4.8E-10 1.6E-14 79.3 5.7 84 23-119 4-91 (91)
9 2aan_A Auracyanin A; cupredoxi 98.8 5.3E-08 1.8E-12 74.6 10.5 92 21-119 18-139 (139)
10 1iuz_A Plastocyanin; electron 98.7 2E-08 6.9E-13 72.6 5.4 89 23-119 3-98 (98)
11 1pmy_A Pseudoazurin; electron 98.6 7.7E-08 2.6E-12 73.5 7.6 82 27-121 11-95 (123)
12 1kdj_A Plastocyanin; electron 98.6 1.1E-07 3.7E-12 68.7 7.2 88 24-119 3-102 (102)
13 1paz_A Pseudoazurin precursor; 98.6 9.4E-08 3.2E-12 73.0 7.0 81 27-120 11-94 (123)
14 2gim_A Plastocyanin; beta shee 98.6 2.3E-07 8E-12 67.2 8.6 87 23-119 5-105 (106)
15 1plc_A Plastocyanin; electron 98.6 2E-07 6.9E-12 67.0 7.6 88 24-119 3-99 (99)
16 3tu6_A Pseudoazurin (blue copp 98.5 1.2E-07 4.2E-12 73.0 5.8 82 27-121 12-97 (127)
17 1b3i_A PETE protein, protein ( 98.5 2.9E-07 1E-11 65.8 7.5 86 24-119 5-97 (97)
18 2plt_A Plastocyanin; electron 98.5 8.6E-08 2.9E-12 68.6 4.5 89 23-119 3-98 (98)
19 3erx_A Pseudoazurin; copper pr 98.5 1.4E-07 4.9E-12 72.2 5.8 78 31-121 15-95 (123)
20 1byp_A Protein (plastocyanin); 98.4 6.2E-07 2.1E-11 64.3 7.2 88 24-119 3-99 (99)
21 3ef4_A Pseudoazurin, blue copp 98.4 6.1E-07 2.1E-11 69.0 6.5 81 27-120 10-95 (124)
22 1pcs_A Plastocyanin; electron 98.3 1.4E-06 4.7E-11 62.3 6.6 89 23-119 4-98 (98)
23 4hci_A Cupredoxin 1; structura 98.1 4.4E-06 1.5E-10 60.4 4.9 67 43-119 28-100 (100)
24 3c75_A Amicyanin; copper prote 97.9 3.2E-05 1.1E-09 59.1 7.2 66 43-119 60-132 (132)
25 3ay2_A Lipid modified azurin p 97.8 4.2E-05 1.4E-09 61.5 6.9 91 22-119 43-166 (167)
26 1cuo_A Protein (azurin ISO-2); 97.7 0.00026 8.9E-09 54.3 10.0 90 23-119 4-128 (129)
27 3cvb_A Plastocyanin; cupredoxi 97.7 0.0001 3.6E-09 52.7 6.9 87 23-119 4-104 (105)
28 1iko_P Ephrin-B2; greek KEY, g 97.7 1E-05 3.4E-10 66.0 1.5 78 46-123 25-143 (178)
29 1id2_A Amicyanin; beta barrel, 97.5 0.00018 6.2E-09 52.6 6.5 81 21-119 19-106 (106)
30 2ov0_A Amicyanin; beta-sandwic 97.5 0.00016 5.4E-09 52.7 6.0 82 20-119 17-105 (105)
31 2ux6_A Pseudoazurin; type-1 co 97.5 0.00013 4.4E-09 55.3 5.6 79 27-120 11-92 (122)
32 2x11_B Ephrin-A5; receptor-sig 97.5 0.00027 9.3E-09 57.5 7.2 75 45-122 52-164 (177)
33 3czu_B Ephrin-A1; ATP-binding, 97.4 0.0004 1.4E-08 56.7 6.9 101 16-123 24-163 (182)
34 1nwp_A Azurin; electron transp 97.3 0.00073 2.5E-08 51.8 7.8 90 23-119 4-128 (128)
35 2iaa_C Azurin; quinoprotein, t 97.3 0.0011 3.9E-08 50.6 8.8 35 84-119 87-127 (128)
36 2ccw_A Azurin II, AZN-2; elect 97.3 0.0011 3.8E-08 50.7 8.2 35 84-119 88-128 (129)
37 3d12_B Ephrin-B3; beta propell 96.9 0.0009 3.1E-08 52.6 4.5 75 45-119 22-140 (141)
38 2vsm_B Ephrin-B2; developmenta 96.8 0.00075 2.6E-08 52.9 3.6 75 46-120 24-139 (140)
39 1shx_A Ephrin-A5; ephrin signa 96.8 0.0034 1.2E-07 49.1 6.8 74 45-121 23-134 (138)
40 1iby_A Nitrosocyanin; RED copp 96.7 0.0038 1.3E-07 45.3 6.3 67 43-119 38-111 (112)
41 2cua_A Protein (CUA); CUA cent 96.4 0.015 5E-07 44.7 8.1 67 43-119 60-134 (135)
42 2wo3_B Ephrin-A2; transferase- 96.0 0.016 5.4E-07 46.2 6.7 74 45-121 32-144 (157)
43 3s8f_B Cytochrome C oxidase su 93.0 0.32 1.1E-05 38.8 7.3 70 43-120 93-168 (168)
44 1fwx_A Nitrous oxide reductase 92.0 0.29 9.8E-06 46.2 6.8 68 43-121 513-593 (595)
45 2dv6_A Nitrite reductase; elec 91.8 0.16 5.4E-06 45.0 4.6 73 43-122 55-134 (447)
46 3fsa_A Azurin; copper, cupredo 91.5 1.7 5.7E-05 33.1 9.5 33 83-119 87-125 (125)
47 3hei_B Ephrin-A1; EPH receptor 90.8 0.25 8.5E-06 38.2 4.2 75 45-119 22-131 (132)
48 3sbq_A Nitrous-oxide reductase 88.1 1.2 4.1E-05 42.4 7.4 67 43-120 558-637 (638)
49 3l6w_A Hemocyanin 1; cupredoxi 74.7 2.6 8.9E-05 38.9 4.1 74 44-119 412-491 (491)
50 1oe1_A Dissimilatory copper-co 70.5 3.6 0.00012 34.9 3.8 34 89-122 286-320 (336)
51 1mzy_A Copper-containing nitri 68.4 6.3 0.00021 33.3 4.9 75 44-121 65-153 (333)
52 1oe1_A Dissimilatory copper-co 59.5 12 0.0004 31.6 5.0 76 44-122 66-154 (336)
53 3hb3_B Cytochrome C oxidase su 58.8 21 0.00071 30.7 6.4 67 45-122 191-266 (298)
54 3iuw_A Activating signal coint 58.3 4 0.00014 29.0 1.5 15 45-59 36-51 (83)
55 3cg8_A Laccase; oxidoreductase 55.9 13 0.00045 31.8 4.7 35 93-127 279-313 (343)
56 1mzy_A Copper-containing nitri 54.1 11 0.00038 31.7 3.9 33 89-121 286-319 (333)
57 1cyx_A CYOA; electron transpor 50.8 14 0.00047 30.3 3.8 64 45-119 43-115 (205)
58 1kbv_A ANIA, major outer membr 50.5 15 0.00052 31.0 4.2 83 32-121 61-157 (327)
59 1yel_A AT1G16640; CESG, protei 49.2 9.6 0.00033 27.0 2.3 19 43-61 74-92 (104)
60 2bw4_A Copper-containing nitri 48.9 20 0.00069 30.2 4.7 76 44-122 72-160 (340)
61 3gdc_A Multicopper oxidase; be 48.3 25 0.00085 29.1 5.1 89 31-122 56-156 (288)
62 2zoo_A Probable nitrite reduct 48.3 11 0.00037 33.0 3.0 84 32-122 51-148 (442)
63 3gdc_A Multicopper oxidase; be 47.4 6.6 0.00022 32.7 1.4 32 89-120 257-288 (288)
64 2gsm_B Cytochrome C oxidase su 45.6 16 0.00055 30.6 3.5 30 89-120 214-246 (262)
65 4i1k_A B3 domain-containing tr 45.1 13 0.00044 28.5 2.6 19 43-61 113-131 (146)
66 2qcp_X Cation efflux system pr 44.9 8.8 0.0003 26.5 1.5 17 44-60 51-67 (80)
67 2vb2_X Copper protein, cation 44.9 8.8 0.0003 27.1 1.5 22 39-60 54-75 (88)
68 1v54_B Cytochrome C oxidase po 44.6 15 0.00051 30.2 3.1 30 89-120 183-215 (227)
69 1sdd_A Coagulation factor V; c 43.3 3.1 0.00011 35.1 -1.3 76 44-121 216-301 (306)
70 2z0t_A Putative uncharacterize 41.0 9.3 0.00032 28.2 1.2 12 44-55 31-42 (109)
71 3kw8_A Laccase, putative coppe 37.2 19 0.00064 29.7 2.6 35 89-123 231-268 (276)
72 1fft_B Ubiquinol oxidase; elec 35.2 20 0.0007 30.9 2.6 86 23-121 129-228 (315)
73 2l55_A SILB,silver efflux prot 34.9 23 0.00079 24.5 2.4 22 39-60 40-61 (82)
74 3nb3_A Outer membrane protein 34.8 4.8 0.00016 33.7 -1.5 33 1-33 1-37 (346)
75 1kbv_A ANIA, major outer membr 30.6 23 0.00077 29.9 2.1 33 89-121 275-308 (327)
76 2zwn_A Two-domain type laccase 30.4 55 0.0019 27.7 4.5 78 46-123 38-129 (339)
77 2bw4_A Copper-containing nitri 29.0 42 0.0014 28.2 3.5 33 89-121 292-325 (340)
78 2cp6_A Restin; microtubule bin 28.5 1.8E+02 0.0062 23.0 6.9 13 43-55 35-47 (172)
79 1xne_A Hypothetical protein PF 28.4 15 0.0005 27.3 0.4 12 45-56 33-44 (113)
80 3t9w_A Small laccase, multi-co 27.2 25 0.00084 29.5 1.7 31 93-123 260-290 (299)
81 2zoo_A Probable nitrite reduct 26.8 37 0.0013 29.5 2.9 34 89-122 265-299 (442)
82 1sdd_B Coagulation factor V; c 24.1 34 0.0012 31.6 2.2 33 89-121 296-328 (647)
83 2l8d_A Lamin-B receptor; DNA b 23.6 66 0.0022 21.8 3.0 44 44-92 7-53 (66)
84 2hzs_I RNA polymerase II media 23.3 1.1 3.9E-05 24.9 -4.8 17 44-60 4-20 (27)
85 3g5w_A Multicopper oxidase typ 23.0 78 0.0027 26.5 4.1 34 89-122 239-278 (318)
86 2z0b_A GDE5, KIAA1434, putativ 22.9 22 0.00075 26.5 0.5 38 21-58 23-74 (131)
87 3tas_A Small laccase, multi-co 22.8 87 0.003 26.1 4.3 34 93-126 244-277 (313)
88 4he6_A Peptidase family U32; u 21.5 52 0.0018 22.5 2.2 20 43-62 26-45 (89)
89 2dig_A Lamin-B receptor; tudor 20.5 90 0.0031 21.2 3.2 46 44-93 10-57 (68)
90 1zpu_A Iron transport multicop 20.5 1.5E+02 0.0051 26.8 5.7 76 44-122 35-126 (534)
91 1aoz_A Ascorbate oxidase; oxid 20.3 1.7E+02 0.0057 26.4 6.0 76 44-122 35-125 (552)
92 4dny_A Metalloprotease STCE; m 20.0 17 0.0006 27.6 -0.6 13 49-61 77-89 (126)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.8e-42 Score=273.66 Aligned_cols=104 Identities=33% Similarity=0.616 Sum_probs=98.2
Q ss_pred ceeEEEecCCCCCccC---CCCCCCCCCCceEeCCEEEEEecCC-CceEEe-CcccCCCCCCCCCccccccCCeEEEc-c
Q 042916 20 HAAQYFVGDTSGWDIS---SNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEV-TKQNFDTCNISNPLKTYSNGNTTVTL-S 93 (189)
Q Consensus 20 ~a~~y~VGd~~GW~~~---~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V-~k~~y~~C~~~~pi~~~~~G~~~v~L-~ 93 (189)
+|++|+|||+.||+++ .||++|+++++|+|||+|+|+|.++ |+|+|| +|++|+.|+.++++..+++|++.|+| +
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~ 81 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD 81 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence 5789999999999998 7899999999999999999999976 459999 99999999999999999999999999 9
Q ss_pred CCcceEEEeCCCCCCCCCCeEEEEecCCCC
Q 042916 94 APGDRYFVSGNRLYCFGGMKLHVHVPADEV 123 (189)
Q Consensus 94 ~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 123 (189)
++|++||||++++||++||||+|+|....+
T Consensus 82 ~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 82 ELGMHYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp SSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred CCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence 999999999999999999999999987755
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.5e-40 Score=253.11 Aligned_cols=103 Identities=32% Similarity=0.668 Sum_probs=96.7
Q ss_pred ceeEEEecCCCCCccC--CCCCCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCCCccccccCCeEEEccCCc
Q 042916 20 HAAQYFVGDTSGWDIS--SNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPG 96 (189)
Q Consensus 20 ~a~~y~VGd~~GW~~~--~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G 96 (189)
+|++|+|||+.||+++ .||++|+++++|+|||+|+|+|.++ |+|+||++++|+.|+.++|+..+++|++.|+|+++|
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G 80 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG 80 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence 4689999999999998 7999999999999999999999987 559999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCCCCeEEEEecCCC
Q 042916 97 DRYFVSGNRLYCFGGMKLHVHVPADE 122 (189)
Q Consensus 97 ~~YFic~v~~HC~~GmKl~I~V~~~~ 122 (189)
++||||++++||++||||+|+|.+..
T Consensus 81 ~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 81 TFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp EEEEECCSTTTTTTTCEEEEEECC--
T ss_pred CEEEECCCCCcccCCCEEEEEEcCCC
Confidence 99999999999999999999997543
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=1.3e-39 Score=250.49 Aligned_cols=102 Identities=31% Similarity=0.564 Sum_probs=93.7
Q ss_pred eEEEecCCCCCccC---CCCCCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCCCccccccCCeEEEccCCcc
Q 042916 22 AQYFVGDTSGWDIS---SNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGD 97 (189)
Q Consensus 22 ~~y~VGd~~GW~~~---~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G~ 97 (189)
++|+|||+.||+++ .||+.|+++++|+|||+|+|+|.++ |+|+||+|++|++|+.++++..+++|++.|+|+++|+
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~ 81 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGP 81 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEE
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCC
Confidence 57999999999985 5799999999999999999999986 5599999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCCCCeEEE-EecCCCC
Q 042916 98 RYFVSGNRLYCFGGMKLHV-HVPADEV 123 (189)
Q Consensus 98 ~YFic~v~~HC~~GmKl~I-~V~~~~~ 123 (189)
+||||++++||++||||+| +|.+.++
T Consensus 82 ~yFic~~~~HC~~Gmkl~In~V~~~~~ 108 (116)
T 1x9u_A 82 QYYICTVGDHCRVGQKLSINVVGAGGA 108 (116)
T ss_dssp EEEECCSTTTTTTTCEEEEEEECC---
T ss_pred EEEECCCCCccccCCEEEEEEECCCCC
Confidence 9999999999999999999 8876543
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=5.1e-38 Score=234.08 Aligned_cols=95 Identities=37% Similarity=0.781 Sum_probs=90.4
Q ss_pred eEEEecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCCCccccccCCeEEEccCCcceEE
Q 042916 22 AQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYF 100 (189)
Q Consensus 22 ~~y~VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G~~YF 100 (189)
++|+|||+.||++ +|++|+++++|++||+|+|+|.++ |+|+||++++|+.|+.++|+..+++|++.|+| ++|++||
T Consensus 1 ~~~~VG~~~GW~~--~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~yF 77 (96)
T 2cbp_A 1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSYF 77 (96)
T ss_dssp CEEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEEEE
T ss_pred CEEEECCcCCCcc--ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCEEE
Confidence 4799999999997 699999999999999999999986 55999999999999999999999999999999 8999999
Q ss_pred EeCCCCCCCCCCeEEEEec
Q 042916 101 VSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 101 ic~v~~HC~~GmKl~I~V~ 119 (189)
||++++||++||||+|+|+
T Consensus 78 ic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 78 ICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp ECCSTTTGGGTCEEEEEEC
T ss_pred EcCCCCccccCCEEEEEEC
Confidence 9999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=5.7e-34 Score=210.42 Aligned_cols=90 Identities=32% Similarity=0.660 Sum_probs=84.6
Q ss_pred eEEEecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCCCccccccCCeEEEccCCcceEE
Q 042916 22 AQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPLKTYSNGNTTVTLSAPGDRYF 100 (189)
Q Consensus 22 ~~y~VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~pi~~~~~G~~~v~L~~~G~~YF 100 (189)
++|+| ||+++ +.|+++++|++||+|+|+|.++ |+|+||++++|+.|+.++|+..+++|++.|+|+ +|++||
T Consensus 1 ~~y~V----gW~~~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~yF 72 (91)
T 1f56_A 1 AVYNI----GWSFN---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYF 72 (91)
T ss_dssp CEEEE----ECSSS---CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEEEE
T ss_pred CEEEE----eCCCC---CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCeEE
Confidence 47999 79987 8999999999999999999986 559999999999999999999999999999996 899999
Q ss_pred EeCCCCCCCCCCeEEEEec
Q 042916 101 VSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 101 ic~v~~HC~~GmKl~I~V~ 119 (189)
||++++||++||||+|+|.
T Consensus 73 ic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 73 ICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp ECCSTTTTTTTCEEEEEEC
T ss_pred EcCCCCccccCCEEEEEEC
Confidence 9999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.20 E-value=4.5e-11 Score=91.96 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=63.0
Q ss_pred ceeEEEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecC------CCceEEeCcc-cCCC--------------C---
Q 042916 20 HAAQYFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSA------SNSVTEVTKQ-NFDT--------------C--- 74 (189)
Q Consensus 20 ~a~~y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~------~~sV~~V~k~-~y~~--------------C--- 74 (189)
..+++.|+-. .+|.+.+ +..+++.||+++|.|.+ .|.+...... ++.. .
T Consensus 15 ~~~~v~V~~~~~~~~F~P------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
T 1qhq_A 15 PAQTVEVRAAPDALAFAQ------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP 88 (140)
T ss_dssp CSEEEEEEBCSSSSSBSC------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT
T ss_pred CCEEEEEEEeCCCceEeC------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc
Confidence 4467777653 3588765 46789999999999976 2446655321 1111 0
Q ss_pred CCCC------CccccccCCeEEEccCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 75 NISN------PLKTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 75 ~~~~------pi~~~~~G~~~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+..+ .+....++...|+++++|.|||+|++++||+.|||..|+|.
T Consensus 89 ~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 89 DTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred ccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 0001 11112233457888999999999999999999999999995
No 7
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.04 E-value=2.8e-10 Score=90.12 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=57.0
Q ss_pred CCceEeCCEEEEEecCC-----CceEEe-CcccCCCCCCCCCcc-------ccccCC---e--EEEccCCcceEEEeCCC
Q 042916 44 DKVFKVGDVLVFSYSAS-----NSVTEV-TKQNFDTCNISNPLK-------TYSNGN---T--TVTLSAPGDRYFVSGNR 105 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~-----~sV~~V-~k~~y~~C~~~~pi~-------~~~~G~---~--~v~L~~~G~~YFic~v~ 105 (189)
..++++||+|+|++.+. |.+..+ ....|+.|.....+. ....|. . .|++ ++|.|||+|.++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 46889999999999762 447776 445788887654432 123343 3 5678 999999999999
Q ss_pred CCCCCCCeEEEEec
Q 042916 106 LYCFGGMKLHVHVP 119 (189)
Q Consensus 106 ~HC~~GmKl~I~V~ 119 (189)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.00 E-value=4.8e-10 Score=79.25 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=58.7
Q ss_pred EEEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecC-C-CceEEeCcccCCCCCCCCCccccccC-CeEEEccCCcce
Q 042916 23 QYFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSA-S-NSVTEVTKQNFDTCNISNPLKTYSNG-NTTVTLSAPGDR 98 (189)
Q Consensus 23 ~y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~-~sV~~V~k~~y~~C~~~~pi~~~~~G-~~~v~L~~~G~~ 98 (189)
+..+|++ .+|.+.+ +..++++||+|.|++.. . |+|.......+. ........| ...+++++||.|
T Consensus 4 ~v~~~~~~~~~~f~P------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-----~~~~~~~~g~~~~~~f~~~G~y 72 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-----HKDLAFSPGETFEATFSEPGTY 72 (91)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC-----EEEEECSTTCEEEEECCSCEEE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC-----cccceeCCCCEEEEEeCCCEEE
Confidence 3456664 4577754 45789999999999875 3 447654433221 011123444 457889999999
Q ss_pred EEEeCCCCCCCCCCeEEEEec
Q 042916 99 YFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 99 YFic~v~~HC~~GmKl~I~V~ 119 (189)
+|+|. .||..||+..|.|.
T Consensus 73 ~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 73 TYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp EEECT--TTGGGTCEEEEEEC
T ss_pred EEEeC--CCccCCCEEEEEEC
Confidence 99999 89999999999984
No 9
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.77 E-value=5.3e-08 Score=74.62 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=61.4
Q ss_pred eeEEEecC-CCCCccCCCCCCCCCCCceEeCCEEEEEecCC-----CceEEeCcc------------------cCCCCCC
Q 042916 21 AAQYFVGD-TSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS-----NSVTEVTKQ------------------NFDTCNI 76 (189)
Q Consensus 21 a~~y~VGd-~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-----~sV~~V~k~------------------~y~~C~~ 76 (189)
..+..||. ..++.+.+ +..+++.||++.|.+.+. |.+...... +|..|..
T Consensus 18 ~~~V~v~~~~~~~~F~p------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 91 (139)
T 2aan_A 18 PVTIEIGSKGEELAFDK------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADK 91 (139)
T ss_dssp CEEEEEEBCTTSSSBSC------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCC
T ss_pred CEEEEEEecCCccEEcC------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCccc
Confidence 34566642 23566654 457899999999988652 446655422 5666653
Q ss_pred CCCc---cccccCCe---EEEccCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 77 SNPL---KTYSNGNT---TVTLSAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 77 ~~pi---~~~~~G~~---~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
.+.+ .....|.+ .|++++||+|+|+|.+++||+ ||+-.|.|.
T Consensus 92 ~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 92 SNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 3321 12344543 445558999999999999999 999999884
No 10
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.69 E-value=2e-08 Score=72.58 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=58.2
Q ss_pred EEEecC-CCCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCc---ccCCCCCCCCCccccccCCe-EEEccCC
Q 042916 23 QYFVGD-TSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTK---QNFDTCNISNPLKTYSNGNT-TVTLSAP 95 (189)
Q Consensus 23 ~y~VGd-~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k---~~y~~C~~~~pi~~~~~G~~-~v~L~~~ 95 (189)
+..+|+ +.++.+.+ +..++++||+|.|.+... |+|...+. +.++.+...........|.+ .++++++
T Consensus 3 ~V~m~~~~~~~~F~P------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~ 76 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVP------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTP 76 (98)
T ss_dssp EEEESCTTSCCSEES------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSC
T ss_pred EEEEecCCCCcEEeC------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCC
Confidence 344554 44677755 467899999999998763 44654431 12222211100012344544 7899999
Q ss_pred cceEEEeCCCCCCCCCCeEEEEec
Q 042916 96 GDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 96 G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
|.|+|+|.. ||+.||+..|.|.
T Consensus 77 G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 77 GVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EEEEEECTT--TGGGTCEEEEEEC
T ss_pred EEEEEEchh--hccCCCEEEEEEC
Confidence 999999995 9999999999984
No 11
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.64 E-value=7.7e-08 Score=73.49 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=56.3
Q ss_pred cCCCCCccCCCCCCCCCCCceEeCCEEEEEecC-CCceEEeCcccCCCCCCCCCc-cccccCC-eEEEccCCcceEEEeC
Q 042916 27 GDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSA-SNSVTEVTKQNFDTCNISNPL-KTYSNGN-TTVTLSAPGDRYFVSG 103 (189)
Q Consensus 27 Gd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~~sV~~V~k~~y~~C~~~~pi-~~~~~G~-~~v~L~~~G~~YFic~ 103 (189)
|++.++.+.+ +..++++||+|.|.+.+ +|+|.... .|...+.. .....|. ..++++++|.|.|+|.
T Consensus 11 g~~g~~~F~P------~~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~ 79 (123)
T 1pmy_A 11 GPGGMMVFDP------ALVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA 79 (123)
T ss_dssp ETTEEEEEES------SEEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS
T ss_pred cCCCCceEeC------CEEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC
Confidence 5444566654 45789999999999976 46676532 22222111 1112343 4789999999999998
Q ss_pred CCCCCCCCCeEEEEecCC
Q 042916 104 NRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 104 v~~HC~~GmKl~I~V~~~ 121 (189)
.||..||+..|+|.+.
T Consensus 80 --~H~~~gM~G~I~V~~~ 95 (123)
T 1pmy_A 80 --PHYMMGMVALVVVGDK 95 (123)
T ss_dssp --TTTTTTCEEEEEESSC
T ss_pred --CccccCCEEEEEEcCC
Confidence 5999999999999753
No 12
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.60 E-value=1.1e-07 Score=68.66 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=57.7
Q ss_pred EEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCcccCC----CCCCCCC----ccccccC-CeEEE
Q 042916 24 YFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQNFD----TCNISNP----LKTYSNG-NTTVT 91 (189)
Q Consensus 24 y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~y~----~C~~~~p----i~~~~~G-~~~v~ 91 (189)
..||++ .++.+.+ +..++++||++.|.+... |+|.....+.++ .|..... ......| ...++
T Consensus 3 V~~g~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~t 76 (102)
T 1kdj_A 3 VEVGDEVGNFKFYP------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAK 76 (102)
T ss_dssp EEESCTTCCCCEES------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEEC
T ss_pred EEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEEE
Confidence 456663 4566654 457899999999997663 556554333221 1111011 1123344 34788
Q ss_pred ccCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 92 LSAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 92 L~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
++++|.|.|+|. .||+.||+..|.|.
T Consensus 77 f~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 77 VSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp CCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred eCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 999999999999 89999999999984
No 13
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.59 E-value=9.4e-08 Score=72.99 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=55.7
Q ss_pred cCCCCCccCCCCCCCCCCCceEeCCEEEEEecC-CCceEEeCcccCCCCCCCCCc-cccccCC-eEEEccCCcceEEEeC
Q 042916 27 GDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSA-SNSVTEVTKQNFDTCNISNPL-KTYSNGN-TTVTLSAPGDRYFVSG 103 (189)
Q Consensus 27 Gd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~~sV~~V~k~~y~~C~~~~pi-~~~~~G~-~~v~L~~~G~~YFic~ 103 (189)
|++.++.+.+ +..++++||+|.|.+.+ +|+|... +.|...+.. .....|. ..++++++|.|.|+|.
T Consensus 11 g~~g~~~F~P------~~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~ 79 (123)
T 1paz_A 11 GAEGAMVFEP------AYIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT 79 (123)
T ss_dssp ETTEEEEEES------SEEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT
T ss_pred cCCCCceEeC------CEEEECCCCEEEEEECCCCeEEEEe-----cccCCCCccceecCCCCEEEEEeCCCEEEEEEeC
Confidence 5544566654 45789999999999976 4666542 122221110 0112333 4789999999999998
Q ss_pred CCCCCCCCCeEEEEecC
Q 042916 104 NRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 104 v~~HC~~GmKl~I~V~~ 120 (189)
.||..||+..|+|.+
T Consensus 80 --~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 80 --PHYAMGMIALIAVGD 94 (123)
T ss_dssp --TTGGGTCEEEEEESS
T ss_pred --CcccCCCEEEEEEcC
Confidence 599999999999975
No 14
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.58 E-value=2.3e-07 Score=67.19 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=56.9
Q ss_pred EEEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCcccCC-----C--CCCCCCccccccCC-eEEE
Q 042916 23 QYFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQNFD-----T--CNISNPLKTYSNGN-TTVT 91 (189)
Q Consensus 23 ~y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~y~-----~--C~~~~pi~~~~~G~-~~v~ 91 (189)
+..||.+ .++.+.+ +..++++||+|.|.+... |.|........+ . +.. +. .....|. ..++
T Consensus 5 ~V~~~~~~~~~~F~P------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~~-~~~~pG~~~~~~ 76 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-KQ-LLMSPGQSTSTT 76 (106)
T ss_dssp EEEESCTTCCSSEES------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-CS-CCCSTTCEEEEE
T ss_pred EEEEEecCCcceEcC------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-cc-eeeCCCCEEEEE
Confidence 3456643 5677754 457899999999997652 446543221100 0 001 11 1223443 4788
Q ss_pred c---cCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 92 L---SAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 92 L---~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+ +++|.|+|+|. .||+.||+..|.|.
T Consensus 77 f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 77 FPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 8 89999999999 89999999999996
No 15
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.56 E-value=2e-07 Score=66.99 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=57.4
Q ss_pred EEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCcc---cCCCCCCC--CCccccccCC-eEEEccC
Q 042916 24 YFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQ---NFDTCNIS--NPLKTYSNGN-TTVTLSA 94 (189)
Q Consensus 24 y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~---~y~~C~~~--~pi~~~~~G~-~~v~L~~ 94 (189)
..+|++ .+..+.+ +..++++||+|.|++... |+|...+.. ..+.+... ........|. ..+++++
T Consensus 3 v~m~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~tf~~ 76 (99)
T 1plc_A 3 VLLGADDGSLAFVP------SEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSN 76 (99)
T ss_dssp EEESCTTCCSCEES------SEEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEEEECCS
T ss_pred EEEecCCCcceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEEEEECC
Confidence 456653 4566654 457899999999988764 446554321 12222100 0001233444 4789999
Q ss_pred CcceEEEeCCCCCCCCCCeEEEEec
Q 042916 95 PGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 95 ~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+|.|.|+|. .||+.||+..|.|.
T Consensus 77 ~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 77 KGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp CEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CceEEEEcC--CCcccCCEEEEEEC
Confidence 999999999 89999999999984
No 16
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.52 E-value=1.2e-07 Score=72.99 Aligned_cols=82 Identities=16% Similarity=0.035 Sum_probs=56.9
Q ss_pred cCCC-CCccCCCCCCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCCCc-cccccC-CeEEEccCCcceEEEe
Q 042916 27 GDTS-GWDISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPL-KTYSNG-NTTVTLSAPGDRYFVS 102 (189)
Q Consensus 27 Gd~~-GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~pi-~~~~~G-~~~v~L~~~G~~YFic 102 (189)
|++. +..+.+ +..++++||+|.|.+.+. |+|...+. +...+.. .....| ...++++++|.|+|+|
T Consensus 12 g~~g~~~~F~P------~~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C 80 (127)
T 3tu6_A 12 AADGRVMAFEP------AVIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQC 80 (127)
T ss_dssp CTTSCEEEEES------SEEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEEC
T ss_pred CCCCcccEEeC------CEEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEe
Confidence 5543 466654 467899999999999864 66765322 1111110 011223 3489999999999999
Q ss_pred CCCCCCCCCCeEEEEecCC
Q 042916 103 GNRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 103 ~v~~HC~~GmKl~I~V~~~ 121 (189)
. .||..||+-.|.|.+.
T Consensus 81 ~--~H~~~GM~G~I~V~~~ 97 (127)
T 3tu6_A 81 A--PHVGMGMIGAIVVGEP 97 (127)
T ss_dssp T--TTGGGTCEEEEEESSC
T ss_pred C--CCCcCCcEEEEEECcC
Confidence 9 6999999999999864
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.52 E-value=2.9e-07 Score=65.77 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=56.1
Q ss_pred EEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCccc---CCCCCCCCCccccccC-CeEEEccCCc
Q 042916 24 YFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQN---FDTCNISNPLKTYSNG-NTTVTLSAPG 96 (189)
Q Consensus 24 y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~---y~~C~~~~pi~~~~~G-~~~v~L~~~G 96 (189)
..+|++ .++.+.+ +..++++||+|.|.+... |++....... .+.+.... .....| ...++++++|
T Consensus 5 V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~tf~~~G 76 (97)
T 1b3i_A 5 IKMGTDKYAPLYEP------KALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTK--LAIAPGSFYSVTLGTPG 76 (97)
T ss_dssp EEEEETTTEEEEES------SEEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCC--CCCSCSCCEEEECCSCS
T ss_pred EEEeccCCccEEeC------CEEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccc--eecCCCCEEEEEeCCCe
Confidence 345543 4566654 457899999999998763 5565432211 00111111 122333 4578999999
Q ss_pred ceEEEeCCCCCCCCCCeEEEEec
Q 042916 97 DRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 97 ~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
.|.|+|. .||+.||+..|.|.
T Consensus 77 ~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 77 TYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp EEEEECS--STTTTTCEEEEEEC
T ss_pred EEEEEcc--ChhhcCCEEEEEEC
Confidence 9999999 89999999999984
No 18
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.51 E-value=8.6e-08 Score=68.60 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=57.2
Q ss_pred EEEecC-CCCCccCCCCCCCCCCCceEeCCEEEEEecCC-Cc-eEEeCc---ccCCCCCCCCCccccccCCe-EEEccCC
Q 042916 23 QYFVGD-TSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS-NS-VTEVTK---QNFDTCNISNPLKTYSNGNT-TVTLSAP 95 (189)
Q Consensus 23 ~y~VGd-~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-~s-V~~V~k---~~y~~C~~~~pi~~~~~G~~-~v~L~~~ 95 (189)
+..+|+ +.++.+.+ +..++++||+|.|++... .| +..... +.++.+...........|.+ .++++++
T Consensus 3 ~V~m~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~ 76 (98)
T 2plt_A 3 TVKLGADSGALEFVP------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAA 76 (98)
T ss_dssp EEEESCTTCCSSEES------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSC
T ss_pred EEEEecCCCCceEeC------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCC
Confidence 445664 34577654 357899999999988764 34 554321 11221110000112344544 7889999
Q ss_pred cceEEEeCCCCCCCCCCeEEEEec
Q 042916 96 GDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 96 G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
|.|.|+|. .||+.||+..|.|.
T Consensus 77 G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 77 GEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EEEEEECG--GGGGGTCEEEEEEC
T ss_pred eEEEEEcC--CccccCCeEEEEEC
Confidence 99999999 79999999999984
No 19
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.50 E-value=1.4e-07 Score=72.16 Aligned_cols=78 Identities=18% Similarity=0.027 Sum_probs=54.8
Q ss_pred CCccCCCCCCCCCCCceEeCCEEEEEecC-CCceEEeCcccCCCCCCCCCc-cccccC-CeEEEccCCcceEEEeCCCCC
Q 042916 31 GWDISSNLDTWPDDKVFKVGDVLVFSYSA-SNSVTEVTKQNFDTCNISNPL-KTYSNG-NTTVTLSAPGDRYFVSGNRLY 107 (189)
Q Consensus 31 GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~~sV~~V~k~~y~~C~~~~pi-~~~~~G-~~~v~L~~~G~~YFic~v~~H 107 (189)
...+.+ +..++++||+|.|.+.+ +|+|...+. |...+.. .....| ...++++++|.|+|+|. .|
T Consensus 15 ~~~F~P------~~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H 81 (123)
T 3erx_A 15 AMVFEP------AFVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PH 81 (123)
T ss_dssp EEEEES------SEEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GG
T ss_pred cEeEeC------CEEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CC
Confidence 366654 46789999999999986 466754321 2222111 011223 34889999999999999 79
Q ss_pred CCCCCeEEEEecCC
Q 042916 108 CFGGMKLHVHVPAD 121 (189)
Q Consensus 108 C~~GmKl~I~V~~~ 121 (189)
|..||+-.|.|.+.
T Consensus 82 ~~~GM~G~I~V~~~ 95 (123)
T 3erx_A 82 FGMGMVGLVQVGDA 95 (123)
T ss_dssp TTTTCEEEEEESSS
T ss_pred CcCCcEEEEEECCC
Confidence 99999999999863
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.42 E-value=6.2e-07 Score=64.28 Aligned_cols=88 Identities=23% Similarity=0.247 Sum_probs=57.3
Q ss_pred EEecC-CCCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCc---ccCCCCCCC--CCccccccCC-eEEEccC
Q 042916 24 YFVGD-TSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTK---QNFDTCNIS--NPLKTYSNGN-TTVTLSA 94 (189)
Q Consensus 24 y~VGd-~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k---~~y~~C~~~--~pi~~~~~G~-~~v~L~~ 94 (189)
..||+ ..+..+.+ +..++++||+|.|++... |+|...+. +.++.+... ........|. ..+++++
T Consensus 3 V~~~~~~~~~~F~P------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~~ 76 (99)
T 1byp_A 3 VLLGSSDGGLAFVP------SDLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTE 76 (99)
T ss_dssp EEESCTTSCCSEES------SEEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEECS
T ss_pred EEEecCCCcceEeC------CEEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeCC
Confidence 34554 44566654 356899999999988764 44654432 112222110 0001233454 4788999
Q ss_pred CcceEEEeCCCCCCCCCCeEEEEec
Q 042916 95 PGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 95 ~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+|.|.|+|. .||+.||+..|.|.
T Consensus 77 ~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 77 KGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp CEEEEEECG--GGTTTTCEEEEEEC
T ss_pred CcEEEEEcC--CccccCCEEEEEEC
Confidence 999999999 89999999999984
No 21
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.38 E-value=6.1e-07 Score=68.97 Aligned_cols=81 Identities=14% Similarity=0.043 Sum_probs=57.4
Q ss_pred cCCCC--CccCCCCCCCCCCCceEeCCEEEEEecCC-CceEEeCcccCCCCCCCCCc-cccccCC-eEEEccCCcceEEE
Q 042916 27 GDTSG--WDISSNLDTWPDDKVFKVGDVLVFSYSAS-NSVTEVTKQNFDTCNISNPL-KTYSNGN-TTVTLSAPGDRYFV 101 (189)
Q Consensus 27 Gd~~G--W~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-~sV~~V~k~~y~~C~~~~pi-~~~~~G~-~~v~L~~~G~~YFi 101 (189)
+|.+| +.+.+ +..++++||+|.|.+++. |+|...+. +...+.. .....|. ..++++++|.|.|+
T Consensus 10 ~g~~G~~~~F~P------~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~ 78 (124)
T 3ef4_A 10 KDDAGNTMVFQP------GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLK 78 (124)
T ss_dssp ECTTSCEEEEES------SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEE
T ss_pred cCCCCceeEEeC------CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEE
Confidence 34455 88765 467999999999999864 66765321 2222211 1112333 48899999999999
Q ss_pred eCCCCCCCCCCeEEEEecC
Q 042916 102 SGNRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 102 c~v~~HC~~GmKl~I~V~~ 120 (189)
|. .||..||+-.|.|.+
T Consensus 79 C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 79 CA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp CT--TTGGGTCEEEEEESS
T ss_pred cC--CCCcCCCEEEEEECC
Confidence 98 799999999999986
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.30 E-value=1.4e-06 Score=62.32 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=55.6
Q ss_pred EEEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCccc--CCCCCCCCCccccccCC-eEEEccCCc
Q 042916 23 QYFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQN--FDTCNISNPLKTYSNGN-TTVTLSAPG 96 (189)
Q Consensus 23 ~y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~--y~~C~~~~pi~~~~~G~-~~v~L~~~G 96 (189)
+..+|.+ .++.+.+ +..++++||++.|.+... |++...+... -+..+..........|. ..++++++|
T Consensus 4 ~V~~~~~~~~~~F~P------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G 77 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPG 77 (98)
T ss_dssp EEEESCTTSCSSEES------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred EEEEecCCCccEEeC------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCe
Confidence 3455543 4576654 357899999999997653 3455432110 00000000011223443 478889999
Q ss_pred ceEEEeCCCCCCCCCCeEEEEec
Q 042916 97 DRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 97 ~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
.|.|+|. .||..||+-.|.|.
T Consensus 78 ~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 78 TYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp EEEEECG--GGTTTTCEEEEEEC
T ss_pred EEEEEcC--CccccCCeEEEEEC
Confidence 9999999 79999999999984
No 23
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.05 E-value=4.4e-06 Score=60.36 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=46.2
Q ss_pred CCCceEeCCEEEEEecCCC---ceEEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCCCCCCCCCCeEEE
Q 042916 43 DDKVFKVGDVLVFSYSASN---SVTEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGNRLYCFGGMKLHV 116 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~---sV~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v~~HC~~GmKl~I 116 (189)
+..++++||++.|.+.+.. |-+.+.+...+ .....|.. .++.+++|.|.|+|. .||..||+-.|
T Consensus 28 ~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i 97 (100)
T 4hci_A 28 NVITIPINESTTLLLKNKGKSEHTFTIKKLGID--------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV 97 (100)
T ss_dssp SEEEECTTSCEEEEEEECSSSCEEEEEGGGTEE--------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred CEEEECCCCEEEEEEEcCCCceEEEEEecCCcc--------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence 4579999999999986532 42333222111 12233432 567789999999997 69999999999
Q ss_pred Eec
Q 042916 117 HVP 119 (189)
Q Consensus 117 ~V~ 119 (189)
.|+
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
No 24
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.89 E-value=3.2e-05 Score=59.12 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=45.4
Q ss_pred CCCceEeCCEEEEEecCC--CceEEeCccc----CCCCCCCCCccccccCC-eEEEccCCcceEEEeCCCCCCCCCCeEE
Q 042916 43 DDKVFKVGDVLVFSYSAS--NSVTEVTKQN----FDTCNISNPLKTYSNGN-TTVTLSAPGDRYFVSGNRLYCFGGMKLH 115 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~--~sV~~V~k~~----y~~C~~~~pi~~~~~G~-~~v~L~~~G~~YFic~v~~HC~~GmKl~ 115 (189)
+..++++||+|.|..... |+|...+... |+. .....|. ..++++++|.|.|+|.. |. ||+-.
T Consensus 60 ~~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~ 128 (132)
T 3c75_A 60 PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGK 128 (132)
T ss_dssp SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred CEEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEE
Confidence 457899999999997653 4465433221 110 1123343 37888999999999996 76 99999
Q ss_pred EEec
Q 042916 116 VHVP 119 (189)
Q Consensus 116 I~V~ 119 (189)
|.|.
T Consensus 129 I~V~ 132 (132)
T 3c75_A 129 VIVE 132 (132)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9884
No 25
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.80 E-value=4.2e-05 Score=61.51 Aligned_cols=91 Identities=14% Similarity=0.128 Sum_probs=55.8
Q ss_pred eEEEecCCCCCccCCCCCCCCCCCce-EeCCEEEEEecCC---------CceEEeCccc---------------CCCCCC
Q 042916 22 AQYFVGDTSGWDISSNLDTWPDDKVF-KVGDVLVFSYSAS---------NSVTEVTKQN---------------FDTCNI 76 (189)
Q Consensus 22 ~~y~VGd~~GW~~~~~Y~~Wa~~~tF-~vGD~L~F~y~~~---------~sV~~V~k~~---------------y~~C~~ 76 (189)
.+..|+.++++.+.+ +..++ +.||.+.|.+.+. |.++..+..+ |..=+.
T Consensus 43 ~~V~I~~~d~m~F~P------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d 116 (167)
T 3ay2_A 43 CAATVESNDNMQFNT------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDD 116 (167)
T ss_dssp CEEEEEECTTSCBSC------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTC
T ss_pred eEEEEEeCCCceEec------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccc
Confidence 466676666777754 34556 6699877766432 4454433322 211011
Q ss_pred CCCc---cccccCCe-EEEcc----CCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 77 SNPL---KTYSNGNT-TVTLS----APGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 77 ~~pi---~~~~~G~~-~v~L~----~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
.+.+ .....|.+ .++++ ++|.|.|+|.+++|=+ |||-.|.|.
T Consensus 117 ~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 117 ARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp TTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 1111 12344544 55554 8999999999999988 999999986
No 26
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.73 E-value=0.00026 Score=54.30 Aligned_cols=90 Identities=9% Similarity=0.025 Sum_probs=54.6
Q ss_pred EEEecCCCCCccCCCCCCCCCCCceEeC-CEEEEEecC-C--------CceEEeCcc----------------cCCCCCC
Q 042916 23 QYFVGDTSGWDISSNLDTWPDDKVFKVG-DVLVFSYSA-S--------NSVTEVTKQ----------------NFDTCNI 76 (189)
Q Consensus 23 ~y~VGd~~GW~~~~~Y~~Wa~~~tF~vG-D~L~F~y~~-~--------~sV~~V~k~----------------~y~~C~~ 76 (189)
+..|+..+...+.+ +..+++.| |.+.|.+.+ + |.++..+.. +|..=+-
T Consensus 4 ~v~i~~~d~m~F~p------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~ 77 (129)
T 1cuo_A 4 ETTVTSGDTMTYST------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGD 77 (129)
T ss_dssp EEEEEECSSSCCSC------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTC
T ss_pred EEEEEeCCCceEcc------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccccc
Confidence 33444445566654 45688999 977777754 2 445444332 2211011
Q ss_pred CCCc---cccccCCe---EEEcc---CCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 77 SNPL---KTYSNGNT---TVTLS---APGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 77 ~~pi---~~~~~G~~---~v~L~---~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
.+.+ .....|.+ +|+++ ++|+|+|+|.+++|=+ |||-.|.|.
T Consensus 78 ~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 78 KRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp TTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 1111 12345543 44444 8999999999999998 899999985
No 27
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.69 E-value=0.0001 Score=52.67 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=53.8
Q ss_pred EEEecCC-CCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCcccCCCCCC-------CCCccccccCCe-EEE
Q 042916 23 QYFVGDT-SGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQNFDTCNI-------SNPLKTYSNGNT-TVT 91 (189)
Q Consensus 23 ~y~VGd~-~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~y~~C~~-------~~pi~~~~~G~~-~v~ 91 (189)
+..||.+ .+..+.+ ...+++.||+|+|..... |.|..-.. .+ .+.. .........|.+ .++
T Consensus 4 ~V~~~~~~~~~~f~p------~~i~v~~Gd~V~~~N~~~~~H~v~~~~~-~~-~~~~g~~~~~~~~~~~~i~pG~~~~~~ 75 (105)
T 3cvb_A 4 TVKMGADSGLFQFEP------ANVTVHPGDTVKWVNNKLPPHNILFDDK-QV-PGASKELADKLSHSQLMFSPGESYEIT 75 (105)
T ss_dssp EEEESCTTCCSCEES------SEEEECTTEEEEEEECSSCCEEEEECTT-SS-GGGCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEeecCCccEEeC------CEEEEcCCCEEEEEECCCCCCeEEEeCC-CC-CcccccccccccccccccCCCCeEEEE
Confidence 3456643 4566654 356899999999986542 33543211 11 1100 000012233433 666
Q ss_pred c---cCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 92 L---SAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 92 L---~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+ +++|+|+|.|. .|+..||+-.|.|.
T Consensus 76 f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 76 FSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp ECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 7 79999999999 79999999999986
No 28
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.68 E-value=1e-05 Score=66.01 Aligned_cols=78 Identities=24% Similarity=0.332 Sum_probs=51.9
Q ss_pred ceEeCCEEEEEecC---------CCc-eEEeCcccCCCCCCCC-C--cccccc--CCeEEEcc-------------CCc-
Q 042916 46 VFKVGDVLVFSYSA---------SNS-VTEVTKQNFDTCNISN-P--LKTYSN--GNTTVTLS-------------APG- 96 (189)
Q Consensus 46 tF~vGD~L~F~y~~---------~~s-V~~V~k~~y~~C~~~~-p--i~~~~~--G~~~v~L~-------------~~G- 96 (189)
..++||.|.+--.. ++. |++|++++|+.|+... + +...+. +...|++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34669999886432 124 7899999999998863 2 222232 23333331 367
Q ss_pred ceEEEeCCC-----------CCCCC-CCeEEEEecCCCC
Q 042916 97 DRYFVSGNR-----------LYCFG-GMKLHVHVPADEV 123 (189)
Q Consensus 97 ~~YFic~v~-----------~HC~~-GmKl~I~V~~~~~ 123 (189)
+|||||+-. |+|.. +|||.|.|.....
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~ 143 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS 143 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence 799999753 78987 8999999976644
No 29
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.54 E-value=0.00018 Score=52.60 Aligned_cols=81 Identities=15% Similarity=0.143 Sum_probs=51.9
Q ss_pred eeEEEecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCccc----CCCCCCCCCccccccCC-eEEEcc
Q 042916 21 AAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQN----FDTCNISNPLKTYSNGN-TTVTLS 93 (189)
Q Consensus 21 a~~y~VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~----y~~C~~~~pi~~~~~G~-~~v~L~ 93 (189)
+.++.|.- .++.+.+ +..++++||+|.|..... |+|...+... |++ .....|. ..++++
T Consensus 19 ~~~~~V~~-~~~~F~P------~~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~ 84 (106)
T 1id2_A 19 ADAVVVGI-EKMKYLT------PEVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFN 84 (106)
T ss_dssp TTCEEEEE-ETTEESS------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEEC
T ss_pred CccEEEEE-EecEEeC------CEEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeC
Confidence 34554432 2355544 457899999999997653 4465432210 110 1123343 378889
Q ss_pred CCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 94 APGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 94 ~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
++|.|.|+|.. |. ||+-.|.|.
T Consensus 85 ~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 85 EAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp SCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCEEEEEEeCC--CC--CCEEEEEEC
Confidence 99999999997 86 999999884
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.53 E-value=0.00016 Score=52.67 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=53.0
Q ss_pred ceeEEEecCCCCCccCCCCCCCCCCCceEeCCEEEEEecCC--CceEEeCccc----CCCCCCCCCccccccCC-eEEEc
Q 042916 20 HAAQYFVGDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSAS--NSVTEVTKQN----FDTCNISNPLKTYSNGN-TTVTL 92 (189)
Q Consensus 20 ~a~~y~VGd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~--~sV~~V~k~~----y~~C~~~~pi~~~~~G~-~~v~L 92 (189)
.+.+|.|-- .+|.+.+ ...++++||+|.|..... |+|...+..+ |+.. ....|. ..+++
T Consensus 17 ~a~~~~V~~-~~~~F~P------~~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf 82 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYET------PELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTF 82 (105)
T ss_dssp CTTCEEEEE-ETTEESS------SEEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEE
T ss_pred CCcCEEEEE-eecEEcC------CEEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEe
Confidence 345555532 3466654 457899999999987654 4465432211 2211 123343 36788
Q ss_pred cCCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
+++|.|+|.|.. |- ||+-.|.|.
T Consensus 83 ~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 83 TEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp CSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred CCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 999999999997 54 999999884
No 31
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.52 E-value=0.00013 Score=55.29 Aligned_cols=79 Identities=19% Similarity=0.123 Sum_probs=52.0
Q ss_pred cCCCCCccCCCCCCCCCCCceEeCCEEEEEecC-CCceEEeCcccCCCCCCCCCc-cccccC-CeEEEccCCcceEEEeC
Q 042916 27 GDTSGWDISSNLDTWPDDKVFKVGDVLVFSYSA-SNSVTEVTKQNFDTCNISNPL-KTYSNG-NTTVTLSAPGDRYFVSG 103 (189)
Q Consensus 27 Gd~~GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~-~~sV~~V~k~~y~~C~~~~pi-~~~~~G-~~~v~L~~~G~~YFic~ 103 (189)
|++.+..+.+ ...++++||+|.|.+.. .|+|..... +-..+.. .....| ...++++++|.|.|+|.
T Consensus 11 g~~g~~~F~P------~~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~ 79 (122)
T 2ux6_A 11 GKDGAMVFEP------ASLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCT 79 (122)
T ss_dssp ETTEEEEEES------SEEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEET
T ss_pred CCCCCceEeC------CEEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeC
Confidence 5443455544 35788999999999876 466655321 1111110 011223 34788999999999999
Q ss_pred CCCCCCCCCeEEEEecC
Q 042916 104 NRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 104 v~~HC~~GmKl~I~V~~ 120 (189)
. |+. |+-.|.|.+
T Consensus 80 ~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 80 P--HPF--MVGVVQVGD 92 (122)
T ss_dssp T--EEE--EEEEEEESS
T ss_pred C--Ccc--CEEEEEEeC
Confidence 7 887 999999975
No 32
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.47 E-value=0.00027 Score=57.49 Aligned_cols=75 Identities=23% Similarity=0.406 Sum_probs=48.8
Q ss_pred CceEeCCEEEEE---ecC-------CCc-eEEeCcccCCCCCCCCCc-ccc--c-----cCCeEEEc-------------
Q 042916 45 KVFKVGDVLVFS---YSA-------SNS-VTEVTKQNFDTCNISNPL-KTY--S-----NGNTTVTL------------- 92 (189)
Q Consensus 45 ~tF~vGD~L~F~---y~~-------~~s-V~~V~k~~y~~C~~~~pi-~~~--~-----~G~~~v~L------------- 92 (189)
..+++||.|-+- |.. ++. +++|++++|++|+..... ..+ + .|..+|++
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 568899999875 332 123 779999999999886532 112 1 13444332
Q ss_pred cCCc-ceEEEeCC-----CCCCCCCCeEEEEecCCC
Q 042916 93 SAPG-DRYFVSGN-----RLYCFGGMKLHVHVPADE 122 (189)
Q Consensus 93 ~~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~~ 122 (189)
=+|| +||||++- ++-| |||.|.|...+
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~ 164 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 164 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCC
Confidence 1367 69999752 2346 99999997654
No 33
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=97.36 E-value=0.0004 Score=56.73 Aligned_cols=101 Identities=15% Similarity=0.264 Sum_probs=55.7
Q ss_pred hhhcceeEEEecCCCCCccC-CCCCCCCCCCceEeCCEEEEEe---cC--------CCc-eEEeCcccCCCCCCCC-Ccc
Q 042916 16 ALTSHAAQYFVGDTSGWDIS-SNLDTWPDDKVFKVGDVLVFSY---SA--------SNS-VTEVTKQNFDTCNISN-PLK 81 (189)
Q Consensus 16 ~~~~~a~~y~VGd~~GW~~~-~~Y~~Wa~~~tF~vGD~L~F~y---~~--------~~s-V~~V~k~~y~~C~~~~-pi~ 81 (189)
+..+++..+.|= |... +-+..=--...+++||.|-+-- .. +.. +++|++++|++|+... +..
T Consensus 24 ~~~~sa~rh~Vy----WNSsNp~F~~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~ 99 (182)
T 3czu_B 24 GAMDAADRHTVF----WNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQV 99 (182)
T ss_dssp -----CCEEEEE----CSTTCGGGTTSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGE
T ss_pred hhhhhccccceE----EcCCCccccCCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcE
Confidence 334556666664 8753 1111001235678999998753 22 123 6799999999998764 222
Q ss_pred cc--c-----cCCeEEEc--c-----------CCc-ceEEEeC----CCCCCCCCCeEEEEecCCCC
Q 042916 82 TY--S-----NGNTTVTL--S-----------APG-DRYFVSG----NRLYCFGGMKLHVHVPADEV 123 (189)
Q Consensus 82 ~~--~-----~G~~~v~L--~-----------~~G-~~YFic~----v~~HC~~GmKl~I~V~~~~~ 123 (189)
.+ + .|..+|++ . ++| +||||+. .++.| |||.|.|.....
T Consensus 100 ~~~C~~P~~~~~p~kftikFQ~FSP~p~GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~ 163 (182)
T 3czu_B 100 RWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT 163 (182)
T ss_dssp EEEECCTTCTTSCCEEEEECCSCCSCTTSCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred EEEeCCCCCCCCCcEEEEEEEEcCCCCCCeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence 21 1 12333322 1 367 6999985 34666 999999986544
No 34
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.34 E-value=0.00073 Score=51.76 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=52.7
Q ss_pred EEEecCCCCCccCCCCCCCCCCCce-EeCCEEEEEecCC---------CceEEeCcc----------------cCCCCCC
Q 042916 23 QYFVGDTSGWDISSNLDTWPDDKVF-KVGDVLVFSYSAS---------NSVTEVTKQ----------------NFDTCNI 76 (189)
Q Consensus 23 ~y~VGd~~GW~~~~~Y~~Wa~~~tF-~vGD~L~F~y~~~---------~sV~~V~k~----------------~y~~C~~ 76 (189)
+..|+..+++.+.+ +..++ +.||++.|.+.+. |.++..+.+ +|..=+.
T Consensus 4 ~v~v~~~d~m~F~p------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~ 77 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGD 77 (128)
T ss_dssp EEEEEECTTSCBSC------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTC
T ss_pred EEEEEeCCCccEec------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccccccc
Confidence 34455555677765 34566 6799887777542 445443322 1211011
Q ss_pred CCCc---cccccCCe-EEEc--c--CCcc-eEEEeCCCCCCCCCCeEEEEec
Q 042916 77 SNPL---KTYSNGNT-TVTL--S--APGD-RYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 77 ~~pi---~~~~~G~~-~v~L--~--~~G~-~YFic~v~~HC~~GmKl~I~V~ 119 (189)
.+.+ .....|.+ .+++ . ++|. |.|+|.+++|=+ |||-.|.|.
T Consensus 78 ~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 78 ARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp TTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred chhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 1111 12345543 4554 3 5776 999999999998 999999884
No 35
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.32 E-value=0.0011 Score=50.64 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=27.6
Q ss_pred ccCCe-EEEcc----CCc-ceEEEeCCCCCCCCCCeEEEEec
Q 042916 84 SNGNT-TVTLS----APG-DRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 84 ~~G~~-~v~L~----~~G-~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
..|.+ .++++ ++| +|.|+|.+++|=+ |||-.|.|.
T Consensus 87 ~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 87 GGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred CCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 45544 45544 788 5999999999998 999999986
No 36
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.27 E-value=0.0011 Score=50.73 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=26.9
Q ss_pred ccCCe-EEEc--c--CCcc-eEEEeCCCCCCCCCCeEEEEec
Q 042916 84 SNGNT-TVTL--S--APGD-RYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 84 ~~G~~-~v~L--~--~~G~-~YFic~v~~HC~~GmKl~I~V~ 119 (189)
..|.+ .+++ + ++|. |.|+|.+++|=+ |||-.|.|.
T Consensus 88 ~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 88 GGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp CTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred CCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 45543 4444 4 6765 999999999988 999999985
No 37
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.89 E-value=0.0009 Score=52.57 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=49.1
Q ss_pred CceEeCCEEEEEe---cC---------CCc-eEEeCcccCCCCCCC-CCcccc--c--cCCeEEEc-------------c
Q 042916 45 KVFKVGDVLVFSY---SA---------SNS-VTEVTKQNFDTCNIS-NPLKTY--S--NGNTTVTL-------------S 93 (189)
Q Consensus 45 ~tF~vGD~L~F~y---~~---------~~s-V~~V~k~~y~~C~~~-~pi~~~--~--~G~~~v~L-------------~ 93 (189)
..+++||.|-+-- .. ++. +++|++++|++|+.. ++...+ + .+..+|++ =
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 3678899998764 32 123 789999999999886 332222 1 23332221 1
Q ss_pred CCc-ceEEEeCC-----------CCCCCC-CCeEEEEec
Q 042916 94 APG-DRYFVSGN-----------RLYCFG-GMKLHVHVP 119 (189)
Q Consensus 94 ~~G-~~YFic~v-----------~~HC~~-GmKl~I~V~ 119 (189)
+|| +||||++- +|-|.. .|||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 367 69999863 457886 899999996
No 38
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=96.83 E-value=0.00075 Score=52.91 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=49.3
Q ss_pred ceEeCCEEEEEecCC---------Cc-eEEeCcccCCCCCCCC-Ccccc--c--cCCeEEEcc-------------CCc-
Q 042916 46 VFKVGDVLVFSYSAS---------NS-VTEVTKQNFDTCNISN-PLKTY--S--NGNTTVTLS-------------APG- 96 (189)
Q Consensus 46 tF~vGD~L~F~y~~~---------~s-V~~V~k~~y~~C~~~~-pi~~~--~--~G~~~v~L~-------------~~G- 96 (189)
..++||.|.+--... +. +++|++++|++|+... +...+ + .+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 346799998865321 23 7899999999998863 22211 1 233333322 467
Q ss_pred ceEEEeCC-----------CCCCCC-CCeEEEEecC
Q 042916 97 DRYFVSGN-----------RLYCFG-GMKLHVHVPA 120 (189)
Q Consensus 97 ~~YFic~v-----------~~HC~~-GmKl~I~V~~ 120 (189)
+||||++- +|-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 69999863 357886 7999999964
No 39
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.76 E-value=0.0034 Score=49.13 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=47.9
Q ss_pred CceEeCCEEEEEe---cC-------CCc-eEEeCcccCCCCCCCCCc-ccc--c-----cCCeEEEc--c----------
Q 042916 45 KVFKVGDVLVFSY---SA-------SNS-VTEVTKQNFDTCNISNPL-KTY--S-----NGNTTVTL--S---------- 93 (189)
Q Consensus 45 ~tF~vGD~L~F~y---~~-------~~s-V~~V~k~~y~~C~~~~pi-~~~--~-----~G~~~v~L--~---------- 93 (189)
..+++||.|-+-- .. ++. +++|++++|++|+..... ..+ + .|..+|++ .
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 5678899997753 32 123 779999999999876532 222 1 13444332 1
Q ss_pred -CCc-ceEEEeCC-----CCCCCCCCeEEEEecCC
Q 042916 94 -APG-DRYFVSGN-----RLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 94 -~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~ 121 (189)
++| +||||++- ++-| |||.|.|...
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~ 134 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPT 134 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEcc
Confidence 267 69999752 3446 9999999754
No 40
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.69 E-value=0.0038 Score=45.34 Aligned_cols=67 Identities=15% Similarity=0.071 Sum_probs=43.5
Q ss_pred CCCceEeCCEEEEEecCCC---ceEEeCcccCCCCCCCCCccccccCCe-EE--EccCCcceEEEeCCCCCCCC-CCeEE
Q 042916 43 DDKVFKVGDVLVFSYSASN---SVTEVTKQNFDTCNISNPLKTYSNGNT-TV--TLSAPGDRYFVSGNRLYCFG-GMKLH 115 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~---sV~~V~k~~y~~C~~~~pi~~~~~G~~-~v--~L~~~G~~YFic~v~~HC~~-GmKl~ 115 (189)
...+++.||.+.|.+.+.. |=+.+.... .......|.+ .+ +.+++|.|+|.|.. ||.. +|+..
T Consensus 38 ~~i~v~~G~~V~~~~~n~d~~~H~~~i~~~~--------~~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 38 ETLVVKKGDAVKVVVENKSPISEGFSIDAFG--------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp CEEEEETTCEEEEEEEECSSSCEEEEEGGGT--------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred CEEEEeCCCEEEEEEEECCCCeEEEEEcCCC--------ceeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 4578999999999886542 322232221 1112334543 44 44999999999997 6743 39999
Q ss_pred EEec
Q 042916 116 VHVP 119 (189)
Q Consensus 116 I~V~ 119 (189)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9885
No 41
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.38 E-value=0.015 Score=44.69 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=45.1
Q ss_pred CCCceEeCCEEEEEecCCC--ceEEeCcccCCCCCCCCCccccccCC---eEEEccCCcceEEEeCC---CCCCCCCCeE
Q 042916 43 DDKVFKVGDVLVFSYSASN--SVTEVTKQNFDTCNISNPLKTYSNGN---TTVTLSAPGDRYFVSGN---RLYCFGGMKL 114 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~--sV~~V~k~~y~~C~~~~pi~~~~~G~---~~v~L~~~G~~YFic~v---~~HC~~GmKl 114 (189)
+..++.+||.+.|..++.+ |=+.+.....+ .....|. ..++++++|.|+|.|.. .+| .+|+.
T Consensus 60 ~~l~Vp~G~~V~~~vts~DV~Hsf~ip~~~~k--------~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M~g 129 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPDVIHGFHVEGTNIN--------VEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMFG 129 (135)
T ss_dssp SSEEEETTSEEEEEEEBSSSCEEEEETTSSCE--------EEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCEE
T ss_pred CEEEEcCCCEEEEEEEeCCccceEEecCCCce--------eEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCCEE
Confidence 4678999999999997652 31222221111 1123343 37889999999999986 345 68999
Q ss_pred EEEec
Q 042916 115 HVHVP 119 (189)
Q Consensus 115 ~I~V~ 119 (189)
.|.|.
T Consensus 130 ~v~V~ 134 (135)
T 2cua_A 130 TIVVK 134 (135)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.99 E-value=0.016 Score=46.21 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=46.3
Q ss_pred CceEeCCEEEEEecC-----------CCc-eEEeCcccCCCCCCCCCc-ccc--c-----cCCeEEE--cc---------
Q 042916 45 KVFKVGDVLVFSYSA-----------SNS-VTEVTKQNFDTCNISNPL-KTY--S-----NGNTTVT--LS--------- 93 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~-----------~~s-V~~V~k~~y~~C~~~~pi-~~~--~-----~G~~~v~--L~--------- 93 (189)
..+++||.|-+--.. ++. +++|++++|++|+....- ..+ + .|..+|+ +.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 457889999886422 123 679999999999886532 122 1 1333332 21
Q ss_pred --CCc-ceEEEeCC-----CCCCCCCCeEEEEecCC
Q 042916 94 --APG-DRYFVSGN-----RLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 94 --~~G-~~YFic~v-----~~HC~~GmKl~I~V~~~ 121 (189)
+|| +||||++- ++-| |||.|.|...
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~ 144 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPT 144 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcC
Confidence 367 69999963 3456 5888888654
No 43
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=92.98 E-value=0.32 Score=38.78 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=43.4
Q ss_pred CCCceEeCCEEEEEecCCC--ceEEeCcccCCCCCCCCCccccccCC---eEEEccCCcceEEEeCC-CCCCCCCCeEEE
Q 042916 43 DDKVFKVGDVLVFSYSASN--SVTEVTKQNFDTCNISNPLKTYSNGN---TTVTLSAPGDRYFVSGN-RLYCFGGMKLHV 116 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~--sV~~V~k~~y~~C~~~~pi~~~~~G~---~~v~L~~~G~~YFic~v-~~HC~~GmKl~I 116 (189)
+...+.+|+.+.|..++.+ |=+.+..-.. ......|. ..++.+++|.||+.|.. -|+--.+|+..|
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP~lgi--------k~da~PG~~n~~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~V 164 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVEGTNI--------NVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGHQNMFGTI 164 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEETTSSC--------EEEECTTBCEEEEEECCSCEEEEEECCSCCSTTGGGCEEEE
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEECCCCe--------EEEecCCceeEEEEEeCCCEEEEEECCcCCCCCcCCCEEEE
Confidence 4567888888888887652 2112221111 11112343 36788999999999995 233335699999
Q ss_pred EecC
Q 042916 117 HVPA 120 (189)
Q Consensus 117 ~V~~ 120 (189)
.|.+
T Consensus 165 ~V~e 168 (168)
T 3s8f_B 165 VVKE 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9863
No 44
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=92.01 E-value=0.29 Score=46.20 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=45.1
Q ss_pred CCCceEeCCEEEEEecCC-------CceEEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCC---CCCCC
Q 042916 43 DDKVFKVGDVLVFSYSAS-------NSVTEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGN---RLYCF 109 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~-------~sV~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v---~~HC~ 109 (189)
...+++.||.+.|..++. |++. +.....+ .....|.+ .|+++++|.|||.|.. ..|
T Consensus 513 p~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~-ip~~gv~--------~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H-- 581 (595)
T 1fwx_A 513 ESFTVKEGDEVTVIVTNLDEIDDLTHGFT-MGNYGVA--------MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH-- 581 (595)
T ss_dssp SEEEEETTCEEEEEEEECCCSTTCCEEEE-ETTTTEE--------EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred CEEEEECCCEEEEEEEeCCCCCCceeeEE-ecCCCcc--------eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence 346789999999998762 2232 2221111 12234433 6788999999999984 356
Q ss_pred CCCeEEEEecCC
Q 042916 110 GGMKLHVHVPAD 121 (189)
Q Consensus 110 ~GmKl~I~V~~~ 121 (189)
.||+..|.|.+.
T Consensus 582 ~gM~G~IiV~p~ 593 (595)
T 1fwx_A 582 MEMRGRMLVEPK 593 (595)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCEEEEEEEcC
Confidence 499999999754
No 45
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=91.84 E-value=0.16 Score=44.95 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=49.8
Q ss_pred CCCceEeCCEEEEEecCC----CceEEeCcccCCCCCCCCCccccccCC---eEEEccCCcceEEEeCCCCCCCCCCeEE
Q 042916 43 DDKVFKVGDVLVFSYSAS----NSVTEVTKQNFDTCNISNPLKTYSNGN---TTVTLSAPGDRYFVSGNRLYCFGGMKLH 115 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~----~sV~~V~k~~y~~C~~~~pi~~~~~G~---~~v~L~~~G~~YFic~v~~HC~~GmKl~ 115 (189)
...+++.||+|+|++.+. |.+..-.......|- ...|. ..|+++++|+++|.|.+.+|=..||+..
T Consensus 55 p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~-------i~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 55 PTLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIV-------NGKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CCEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCB-------CSTTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred CeEEEcCCCEEEEEEEcCCCCceEEEEccCCccccee-------cCCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 457899999999998653 223321111112232 22333 3567789999999999989988899999
Q ss_pred EEecCCC
Q 042916 116 VHVPADE 122 (189)
Q Consensus 116 I~V~~~~ 122 (189)
|.|....
T Consensus 128 i~V~~~~ 134 (447)
T 2dv6_A 128 IQVLPGN 134 (447)
T ss_dssp EEEESSC
T ss_pred EEEeCCc
Confidence 9997654
No 46
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=91.53 E-value=1.7 Score=33.09 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=23.3
Q ss_pred cccCCe-EEEcc-----CCcceEEEeCCCCCCCCCCeEEEEec
Q 042916 83 YSNGNT-TVTLS-----APGDRYFVSGNRLYCFGGMKLHVHVP 119 (189)
Q Consensus 83 ~~~G~~-~v~L~-----~~G~~YFic~v~~HC~~GmKl~I~V~ 119 (189)
...|.+ .++++ ++|.|-|+|+ +|= |||-.|.|.
T Consensus 87 l~pGes~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 87 IGSGEKDSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp BCTTCEEEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred eCCCcEEEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 345554 44444 6799999999 886 999999873
No 47
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=90.80 E-value=0.25 Score=38.21 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=44.6
Q ss_pred CceEeCCEEEEEecC-----------CCc-eEEeCcccCCCCCCCC-Ccccc--c-----cCCeEEEc--c---------
Q 042916 45 KVFKVGDVLVFSYSA-----------SNS-VTEVTKQNFDTCNISN-PLKTY--S-----NGNTTVTL--S--------- 93 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~-----------~~s-V~~V~k~~y~~C~~~~-pi~~~--~-----~G~~~v~L--~--------- 93 (189)
..+++||.|-+--.. ++. ++.|++++|++|+... +...+ + .|..+|++ .
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 567889999775422 123 6799999999999765 22222 1 23343332 1
Q ss_pred --CCc-ceEEEeCCCCCCCC-CCeEEEEec
Q 042916 94 --APG-DRYFVSGNRLYCFG-GMKLHVHVP 119 (189)
Q Consensus 94 --~~G-~~YFic~v~~HC~~-GmKl~I~V~ 119 (189)
++| .|||||+-..|=.. =.||.|.|.
T Consensus 102 EF~pG~~YY~ISt~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKPIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEESSCCCCSCCEEEEEEC
T ss_pred eecCCCcEEEEEccCCCCCCcceEEEEEEE
Confidence 367 68999862211111 178888774
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.06 E-value=1.2 Score=42.37 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=44.3
Q ss_pred CCCceEeCCEEEEEecCC-------CceEEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCCCCCCCC--
Q 042916 43 DDKVFKVGDVLVFSYSAS-------NSVTEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGNRLYCFG-- 110 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~-------~sV~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v~~HC~~-- 110 (189)
+..++.+||.+.|..++. |+.. +.. +. .......|.+ .|+.++||.|||.|.. +|-.
T Consensus 558 ~eI~VP~GdtVrfiLTN~D~veDViHSF~-IPs--lG------IK~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~H 626 (638)
T 3sbq_A 558 QEFTVKQGDEVTVTITNIDQIEDVSHGFV-VVN--HG------VSMEISPQQTSSITFVADKPGLHWYYCSW--FCHALH 626 (638)
T ss_dssp CEEEEETTCEEEEEEEECCCSTTCCEEEE-ETT--TT------EEEEECTTCEEEEEEECCSCEEEEEECCS--CCSTTC
T ss_pred CEEEEecCceeEEEEecCCcCCCceeeeE-ecC--CC------ceeeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCc
Confidence 457899999999988762 2222 211 11 1112234543 6788999999999997 5554
Q ss_pred -CCeEEEEecC
Q 042916 111 -GMKLHVHVPA 120 (189)
Q Consensus 111 -GmKl~I~V~~ 120 (189)
+|+..|.|..
T Consensus 627 s~M~G~ViVEP 637 (638)
T 3sbq_A 627 MEMVGRMMVEP 637 (638)
T ss_dssp TTCEEEEEEEC
T ss_pred ccceEEEEEec
Confidence 4999999964
No 49
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=74.69 E-value=2.6 Score=38.94 Aligned_cols=74 Identities=18% Similarity=0.355 Sum_probs=47.2
Q ss_pred CCceEeCCEEEEEecCC--Cc-eEEe-CcccCCCCCCCCCc-cccccCCeEEEccCCcceEEEeCCCCCCCCCC-eEEEE
Q 042916 44 DKVFKVGDVLVFSYSAS--NS-VTEV-TKQNFDTCNISNPL-KTYSNGNTTVTLSAPGDRYFVSGNRLYCFGGM-KLHVH 117 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~--~s-V~~V-~k~~y~~C~~~~pi-~~~~~G~~~v~L~~~G~~YFic~v~~HC~~Gm-Kl~I~ 117 (189)
+.-++-|-.|+|.=-.+ .. ++.+ +-.....|....-. ..|.=| .+.--++|.|||..+...-|+.|- |++|+
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFSFHAFELG--KMYSVESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCccCccccc--ceEecCCCceEecCChHHHHhCCceeEEEE
Confidence 34567788888854332 22 3332 55666778775422 111111 222234899999999999999997 99999
Q ss_pred ec
Q 042916 118 VP 119 (189)
Q Consensus 118 V~ 119 (189)
|+
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 84
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=70.45 E-value=3.6 Score=34.88 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=29.8
Q ss_pred EEEccCCcceEEEeCCCCCC-CCCCeEEEEecCCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYC-FGGMKLHVHVPADE 122 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~ 122 (189)
.|+.+++|.|+|.|....|+ ..||.-.++|....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 67788999999999988898 89999999997643
No 51
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=68.37 E-value=6.3 Score=33.34 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=47.3
Q ss_pred CCceEeCCEEEEEecCC----C-c-eEEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCCCC-----CCC
Q 042916 44 DKVFKVGDVLVFSYSAS----N-S-VTEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGNRL-----YCF 109 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~----~-s-V~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v~~-----HC~ 109 (189)
..+++.||.|++++.+. | | +..-.....+.- .+......|.+ .|+++++|++||-|-..+ |=.
T Consensus 65 ~i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 65 LMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred cEEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 36789999999998664 2 3 432111111100 01112344443 677789999999998764 666
Q ss_pred CCCeEEEEecCC
Q 042916 110 GGMKLHVHVPAD 121 (189)
Q Consensus 110 ~GmKl~I~V~~~ 121 (189)
.||.-.+.|...
T Consensus 142 ~Gl~G~~iV~~~ 153 (333)
T 1mzy_A 142 SGMAGCIMVLPR 153 (333)
T ss_dssp TTCEEEEEEECT
T ss_pred CCCEEEEEEccC
Confidence 899999888754
No 52
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=59.45 E-value=12 Score=31.61 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=46.7
Q ss_pred CCceEeCCEEEEEecCC----C-c-eEEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCCCC----CCCC
Q 042916 44 DKVFKVGDVLVFSYSAS----N-S-VTEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGNRL----YCFG 110 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~----~-s-V~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v~~----HC~~ 110 (189)
..+++.||.|++++.+. | | +..-.....+ -.+++.....|.+ .|+++++|++||-|...+ |=..
T Consensus 66 ~i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 66 TLVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp CEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred eEEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 46889999999988663 2 3 3321110000 0011112344443 677789999999998754 4567
Q ss_pred CCeEEEEecCCC
Q 042916 111 GMKLHVHVPADE 122 (189)
Q Consensus 111 GmKl~I~V~~~~ 122 (189)
||.-.+.|....
T Consensus 143 Gl~G~liV~~~~ 154 (336)
T 1oe1_A 143 GMSGTLMVLPRD 154 (336)
T ss_dssp TCEEEEEEECTT
T ss_pred CCeEEEEEecCc
Confidence 999999887543
No 53
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=58.77 E-value=21 Score=30.68 Aligned_cols=67 Identities=16% Similarity=0.175 Sum_probs=41.2
Q ss_pred CceEeCCEEEEEecCCC--ceEEeCcccCCCCCCCCCccc-cccCC---eEEEccCCcceEEEeCCCCCCCC---CCeEE
Q 042916 45 KVFKVGDVLVFSYSASN--SVTEVTKQNFDTCNISNPLKT-YSNGN---TTVTLSAPGDRYFVSGNRLYCFG---GMKLH 115 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~~--sV~~V~k~~y~~C~~~~pi~~-~~~G~---~~v~L~~~G~~YFic~v~~HC~~---GmKl~ 115 (189)
..+.+|+.++|.-++.+ |=.-|.+-. ++. --.|. ..+..++||.||..|.+ -|.. .|++.
T Consensus 191 lvlP~g~~V~~~ltS~DViHsf~iP~lg---------~k~daiPG~~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~ 259 (298)
T 3hb3_B 191 VVVPVGKKVLVQVTATDVIHAWTIPAFA---------VKQDAVPGRIAQLWFSVDQEGVYFGQCSE--LCGINHAYMPIV 259 (298)
T ss_dssp EEEESSSEEEEEEEESSSCEEEEEGGGT---------EEEEECTTCCEEEEEECSSSEEEEECCCS--CCSTTTTSCCEE
T ss_pred EEEEcCCEEEEEEEeCCccceeeEcccC---------ceEEecCCceEEEEEEeCCCEEEEEEccc--ccCcCccCCeeE
Confidence 35567788888877642 211221111 111 11333 36788999999999985 5554 59999
Q ss_pred EEecCCC
Q 042916 116 VHVPADE 122 (189)
Q Consensus 116 I~V~~~~ 122 (189)
|.|.+..
T Consensus 260 v~vvs~~ 266 (298)
T 3hb3_B 260 VKAVSQE 266 (298)
T ss_dssp EEEECHH
T ss_pred EEEEcHH
Confidence 9998754
No 54
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=58.35 E-value=4 Score=28.97 Aligned_cols=15 Identities=40% Similarity=0.937 Sum_probs=11.9
Q ss_pred CceEeCCEEEEE-ecC
Q 042916 45 KVFKVGDVLVFS-YSA 59 (189)
Q Consensus 45 ~tF~vGD~L~F~-y~~ 59 (189)
+.|++||.|+|+ |.+
T Consensus 36 r~~~vGD~l~l~E~~~ 51 (83)
T 3iuw_A 36 RNFQVGDILILEEYMN 51 (83)
T ss_dssp SCCCTTCEEEEEEEET
T ss_pred cCCCCCCEEEEEEccC
Confidence 459999999995 643
No 55
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=55.93 E-value=13 Score=31.84 Aligned_cols=35 Identities=14% Similarity=-0.023 Sum_probs=29.5
Q ss_pred cCCcceEEEeCCCCCCCCCCeEEEEecCCCCCCCC
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASPI 127 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~p~ 127 (189)
+.||.++|-|-+..|=..||...+.|.......|.
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~~P~ 313 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPG 313 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCSC
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCCCCCC
Confidence 57999999999999999999999999876554443
No 56
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=54.09 E-value=11 Score=31.73 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.5
Q ss_pred EEEccCCcceEEEeCCCCCC-CCCCeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYC-FGGMKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~ 121 (189)
.|..+++|.++|.|-...|+ ..||.-.++|...
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~ 319 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGE 319 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCC
Confidence 67788999999999999999 9999999999754
No 57
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=50.80 E-value=14 Score=30.28 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=39.8
Q ss_pred CceEeCCEEEEEecCCC--ceEEeCcccCCCCCCCCCcccc-ccCC---eEEEccCCcceEEEeCCCCCCCC---CCeEE
Q 042916 45 KVFKVGDVLVFSYSASN--SVTEVTKQNFDTCNISNPLKTY-SNGN---TTVTLSAPGDRYFVSGNRLYCFG---GMKLH 115 (189)
Q Consensus 45 ~tF~vGD~L~F~y~~~~--sV~~V~k~~y~~C~~~~pi~~~-~~G~---~~v~L~~~G~~YFic~v~~HC~~---GmKl~ 115 (189)
..+.+|+.+.|.-++.+ |=+.|..-. ++.. -.|. ..+..+++|.||..|.. -|.. .|++.
T Consensus 43 l~lP~g~~V~~~lTS~DViHSF~IP~lg---------vK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~ 111 (205)
T 1cyx_A 43 IAFPANTPVYFKVTSNSVMHSFFIPRLG---------SQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMKFK 111 (205)
T ss_dssp EEEETTSCEEEEEEESSSCEEEEEGGGT---------EEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCCEE
T ss_pred EEEeCCCEEEEEEecCCceeeEEecccC---------cEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhceEE
Confidence 45677888888887642 212221110 1111 1232 25778999999999985 5655 49999
Q ss_pred EEec
Q 042916 116 VHVP 119 (189)
Q Consensus 116 I~V~ 119 (189)
|.|.
T Consensus 112 v~vv 115 (205)
T 1cyx_A 112 AIAT 115 (205)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 58
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=50.50 E-value=15 Score=31.03 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=48.8
Q ss_pred CccCCCCCCCCCCCceEeCCEEEEEecCC------CceEE--eCcccCCCCCCCCCccccccCCe---EEEccCCcceEE
Q 042916 32 WDISSNLDTWPDDKVFKVGDVLVFSYSAS------NSVTE--VTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYF 100 (189)
Q Consensus 32 W~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~------~sV~~--V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YF 100 (189)
|.++-.|. ....+++.||++++++.+. |++.. +...+-. .. ......|.+ .|+.+++|++||
T Consensus 61 ~~~ng~~p--gP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG~----~~-~~~i~PG~~~~y~f~~~~~Gt~wy 133 (327)
T 1kbv_A 61 WTFDGDVP--GRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGG----AA-ATFTAPGRTSTFSFKALQPGLYIY 133 (327)
T ss_dssp EEETTBSS--CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGGG----TT-TTCBCTTEEEEEEEECCSCEEEEE
T ss_pred EEECCccC--CCeEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCCC----Cc-ceeecCCCEEEEEEECCCCeEEEE
Confidence 66653332 2346889999999988653 21221 1111100 00 011334433 667789999999
Q ss_pred EeCCC---CCCCCCCeEEEEecCC
Q 042916 101 VSGNR---LYCFGGMKLHVHVPAD 121 (189)
Q Consensus 101 ic~v~---~HC~~GmKl~I~V~~~ 121 (189)
-|... .|=..||.-.|.|...
T Consensus 134 H~h~~~~~~~~~~Gl~G~~iV~~~ 157 (327)
T 1kbv_A 134 HCAVAPVGMHIANGMYGLILVEPK 157 (327)
T ss_dssp ECCCSSHHHHHHTTCEEEEEEECT
T ss_pred EeCCCChhhhhhcceEEEEEEecC
Confidence 99752 3556799999999764
No 59
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=49.19 E-value=9.6 Score=27.02 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.9
Q ss_pred CCCceEeCCEEEEEecCCC
Q 042916 43 DDKVFKVGDVLVFSYSASN 61 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~ 61 (189)
..+.+++||.|+|+|....
T Consensus 74 ~~~~L~~GD~lvF~~~~~~ 92 (104)
T 1yel_A 74 KDNNLEDGKYLQFIYDRDR 92 (104)
T ss_dssp HHHTCCTTCEEEEEECSSS
T ss_pred HHcCCCCCCEEEEEEcCCC
Confidence 4578999999999998754
No 60
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=48.86 E-value=20 Score=30.15 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=46.8
Q ss_pred CCceEeCCEEEEEecCC----C-c-eEEeCcccCCCCCCCCCccccccCCe---EEEccCCcceEEEeCCCC----CCCC
Q 042916 44 DKVFKVGDVLVFSYSAS----N-S-VTEVTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFVSGNRL----YCFG 110 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~----~-s-V~~V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFic~v~~----HC~~ 110 (189)
..+++.||.|++++.+. | | +..-.....+ + ..+......|.+ .|+++++|++||-|...+ |=..
T Consensus 72 ~i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 72 LMVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred cEEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 36789999999998763 2 3 3321111000 0 011112334433 677789999999998764 5568
Q ss_pred CCeEEEEecCCC
Q 042916 111 GMKLHVHVPADE 122 (189)
Q Consensus 111 GmKl~I~V~~~~ 122 (189)
||.-.+.|....
T Consensus 149 Gl~G~~iV~~~~ 160 (340)
T 2bw4_A 149 GMNGAIMVLPRD 160 (340)
T ss_dssp TCEEEEEEECTB
T ss_pred cCEEEEEEccCc
Confidence 999888887543
No 61
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=48.35 E-value=25 Score=29.11 Aligned_cols=89 Identities=13% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCccCCCCCCCCCCCceEeCCEEEEEecCC----CceEE--eCcccCCCCCCCCCccccccCCe---EEEccCCcceEEE
Q 042916 31 GWDISSNLDTWPDDKVFKVGDVLVFSYSAS----NSVTE--VTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYFV 101 (189)
Q Consensus 31 GW~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~----~sV~~--V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YFi 101 (189)
-|.++..+. ....+++.||.|+.++.+. +++.. +.....|.=.... ......|.+ .|+.+++|++||-
T Consensus 56 ~~~~ng~~p--gP~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~~-~~~i~PG~~~~y~f~~~~~Gt~~yH 132 (288)
T 3gdc_A 56 GWSYNGRIP--GPTLWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIG-AGSIAPGQSFTYEFDATPFGTHLYH 132 (288)
T ss_dssp EEEETTBSS--CCEEEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTST-TCSBCTTCEEEEEEECCSCEEEEEE
T ss_pred EEEECCccC--CCcEEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCCCcc-ceeECCCCEEEEEEEcCCCccEEEE
Confidence 366653221 1347889999999998663 21221 1111111100000 011233433 6778899999999
Q ss_pred eCCC---CCCCCCCeEEEEecCCC
Q 042916 102 SGNR---LYCFGGMKLHVHVPADE 122 (189)
Q Consensus 102 c~v~---~HC~~GmKl~I~V~~~~ 122 (189)
|-.. .|=..||.-.+.|....
T Consensus 133 ~H~~~~~~~~~~Gl~G~liV~~~~ 156 (288)
T 3gdc_A 133 CHQSPLAPHIAKGLYGGFIVEPKE 156 (288)
T ss_dssp CCCSSHHHHHHTTCEEEEEEECSS
T ss_pred ecCcchHHHHhCcCeEEEEEeCCc
Confidence 9875 35568999888887654
No 62
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=48.31 E-value=11 Score=33.05 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=48.6
Q ss_pred CccCCCCCCCCCCCceEeCCEEEEEecCC-----Cc-eEE--eCcccCCCCCCCCCccccccCCe---EEEccCCcceEE
Q 042916 32 WDISSNLDTWPDDKVFKVGDVLVFSYSAS-----NS-VTE--VTKQNFDTCNISNPLKTYSNGNT---TVTLSAPGDRYF 100 (189)
Q Consensus 32 W~~~~~Y~~Wa~~~tF~vGD~L~F~y~~~-----~s-V~~--V~k~~y~~C~~~~pi~~~~~G~~---~v~L~~~G~~YF 100 (189)
|.++-.+. ....+++.||+|++++.+. .| +.. +... |. .........|.+ .|+.+++|++||
T Consensus 51 ~~~ng~~p--gp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~--dG---~~~~~~i~pg~~~~y~f~~~~~Gt~~y 123 (442)
T 2zoo_A 51 WSFGETVP--GSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGP--GG---GAESSFTAPGHTSTFNFKALNPGLYIY 123 (442)
T ss_dssp EEETTBSS--CCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCSG--GG---GGGGCCBCTTCEEEEEEECCSCEEEEE
T ss_pred EEECCcCC--CCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCC--CC---CCccEEECCCCEEEEEEEcCCCeEEEE
Confidence 66653221 2346889999999988653 12 321 1111 10 000011233433 677789999999
Q ss_pred EeC---CCCCCCCCCeEEEEecCCC
Q 042916 101 VSG---NRLYCFGGMKLHVHVPADE 122 (189)
Q Consensus 101 ic~---v~~HC~~GmKl~I~V~~~~ 122 (189)
-|- ...|=..||.-.+.|....
T Consensus 124 H~H~~~~~~~~~~Gl~G~~iv~~~~ 148 (442)
T 2zoo_A 124 HCATAPVGMHIANGMYGLILVEPKE 148 (442)
T ss_dssp ECCCSSHHHHHHTTCEEEEEEECTT
T ss_pred ecCCCChHHHHhCccEEEEEEeCCC
Confidence 994 3456668999988887543
No 63
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=47.42 E-value=6.6 Score=32.73 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=28.5
Q ss_pred EEEccCCcceEEEeCCCCCCCCCCeEEEEecC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPA 120 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~ 120 (189)
.+..+.||.+.|.|-+..|=+.||.-.+.|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 56668999999999999999999999999863
No 64
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=45.58 E-value=16 Score=30.64 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=25.1
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPA 120 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 120 (189)
.+..+++|.||..|+. -|..| |++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 6788999999999985 67665 999988865
No 65
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=45.08 E-value=13 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.9
Q ss_pred CCCceEeCCEEEEEecCCC
Q 042916 43 DDKVFKVGDVLVFSYSASN 61 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~ 61 (189)
.++.+++||.++|++....
T Consensus 113 ~dn~L~~GD~cvFeli~~~ 131 (146)
T 4i1k_A 113 LENNLGEGDVCVFELLRTR 131 (146)
T ss_dssp HHTTCCTTCEEEEEECSSS
T ss_pred HHcCCCCCCEEEEEEecCC
Confidence 4578999999999998753
No 66
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=44.95 E-value=8.8 Score=26.52 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.5
Q ss_pred CCceEeCCEEEEEecCC
Q 042916 44 DKVFKVGDVLVFSYSAS 60 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~ 60 (189)
-..+++||.|.|.+...
T Consensus 51 l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp ECCCCTTCEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEe
Confidence 46799999999999764
No 67
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=44.87 E-value=8.8 Score=27.05 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=16.8
Q ss_pred CCCCCCCceEeCCEEEEEecCC
Q 042916 39 DTWPDDKVFKVGDVLVFSYSAS 60 (189)
Q Consensus 39 ~~Wa~~~tF~vGD~L~F~y~~~ 60 (189)
...+.-..+++||.|.|.+...
T Consensus 54 ~~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 54 TPQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp CTTCEECCCCTTCEEEEEEEEE
T ss_pred CChhhhhcCCCCCEEEEEEEEe
Confidence 3344457899999999999764
No 68
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=44.58 E-value=15 Score=30.20 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=24.9
Q ss_pred EEEccCCcceEEEeCCCCCCCCC---CeEEEEecC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGG---MKLHVHVPA 120 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~G---mKl~I~V~~ 120 (189)
.+..++||.||..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 6778999999999985 67765 999888865
No 69
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=43.33 E-value=3.1 Score=35.08 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=32.4
Q ss_pred CCceEeCCEEEEEecCC--C---ceEEeCcccCCCCC--CCCCccccccCC---eEEEccCCcceEEEeCCCCCCCCCCe
Q 042916 44 DKVFKVGDVLVFSYSAS--N---SVTEVTKQNFDTCN--ISNPLKTYSNGN---TTVTLSAPGDRYFVSGNRLYCFGGMK 113 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~--~---sV~~V~k~~y~~C~--~~~pi~~~~~G~---~~v~L~~~G~~YFic~v~~HC~~GmK 113 (189)
..+++.||+++|..-+. . |.+-+....|+. + ..+.+. ...|. -.|..+++|.++|.|-+..|-..||.
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-dG~~~dtv~-l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM~ 293 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-NHHKISAIT-LVSATSTTANMTVSPEGRWTIASLIPRHFQAGMQ 293 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEE-TTEECSCCC-EETTCCBC--------CCCCCBCCSTTTGGGTCB
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee-CCEEcceEE-ECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCCe
Confidence 46778899999887542 1 211122211211 0 011111 12232 25677889999999999999999999
Q ss_pred EEEEecCC
Q 042916 114 LHVHVPAD 121 (189)
Q Consensus 114 l~I~V~~~ 121 (189)
..+.|...
T Consensus 294 ~~~~V~~~ 301 (306)
T 1sdd_A 294 AYIDIKNC 301 (306)
T ss_dssp CCC-----
T ss_pred EEEEEecC
Confidence 99988753
No 70
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=40.96 E-value=9.3 Score=28.23 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=10.5
Q ss_pred CCceEeCCEEEE
Q 042916 44 DKVFKVGDVLVF 55 (189)
Q Consensus 44 ~~tF~vGD~L~F 55 (189)
.+.+++||.|+|
T Consensus 31 ~~~ikvGD~I~f 42 (109)
T 2z0t_A 31 RRQIKPGDIIIF 42 (109)
T ss_dssp GGGCCTTCEEEE
T ss_pred hhcCCCCCEEEE
Confidence 357899999999
No 71
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=37.24 E-value=19 Score=29.69 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=29.5
Q ss_pred EEEcc---CCcceEEEeCCCCCCCCCCeEEEEecCCCC
Q 042916 89 TVTLS---APGDRYFVSGNRLYCFGGMKLHVHVPADEV 123 (189)
Q Consensus 89 ~v~L~---~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 123 (189)
.+..+ .||.++|-|-+..|=..||...+.|.....
T Consensus 231 ~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 231 QIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp EEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred EEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 44555 599999999999999999999999987654
No 72
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=35.19 E-value=20 Score=30.94 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=51.1
Q ss_pred EEEecCCCCCccCCCCCCC----CCCCceEeCCEEEEEecCCC--ceEEeCcccCCCCCCCCCccc-cccCC---eEEEc
Q 042916 23 QYFVGDTSGWDISSNLDTW----PDDKVFKVGDVLVFSYSASN--SVTEVTKQNFDTCNISNPLKT-YSNGN---TTVTL 92 (189)
Q Consensus 23 ~y~VGd~~GW~~~~~Y~~W----a~~~tF~vGD~L~F~y~~~~--sV~~V~k~~y~~C~~~~pi~~-~~~G~---~~v~L 92 (189)
..++|-.=.|.+ .|.+- .+...+.+|..++|.-++.+ |=+.|..-. ++. --.|. ..+..
T Consensus 129 IkVig~QW~W~f--~Ypd~~i~t~n~l~lP~g~~V~~~lTS~DViHsf~IP~lg---------~k~DaiPGr~n~~~~~~ 197 (315)
T 1fft_B 129 IEVVSMDWKWFF--IYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLG---------SQIYAMAGMQTRLHLIA 197 (315)
T ss_dssp EEEECCTTSCEE--ECTTTCCEEESBCCCCSSSEEEEEECBSSSCEEEEEGGGT---------EEEEECBTSCEEEEEEC
T ss_pred EEEeeeeccEEE--ecCCCcccccceEEEeCCCEEEEEEEeCCccceeeecccC---------cEEeecCCcceeeEEec
Confidence 445565445554 23221 12356788999999988753 322232111 111 11233 26788
Q ss_pred cCCcceEEEeCCCCCCCC---CCeEEEEec-CC
Q 042916 93 SAPGDRYFVSGNRLYCFG---GMKLHVHVP-AD 121 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~---GmKl~I~V~-~~ 121 (189)
+++|.||..|.. .|.. .|++.|.|. +.
T Consensus 198 ~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~~ 228 (315)
T 1fft_B 198 NEPGTYDGISAS--YSGPGFSGMKFKAIATPDR 228 (315)
T ss_dssp CSCBCCEEBCCS--CCSTTTTTCCEECCBCSST
T ss_pred CCCeEEEEeccc--cchhhHHhccceEEEecCH
Confidence 999999999985 6665 499999888 54
No 73
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=34.90 E-value=23 Score=24.53 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=17.0
Q ss_pred CCCCCCCceEeCCEEEEEecCC
Q 042916 39 DTWPDDKVFKVGDVLVFSYSAS 60 (189)
Q Consensus 39 ~~Wa~~~tF~vGD~L~F~y~~~ 60 (189)
..-+.-..+++||.|.|.+...
T Consensus 40 ~~~~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 40 PPAGLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp CTTCCCSSCSTTCEEEEEEEEE
T ss_pred CChhHhhcCCCCCEEEEEEEEC
Confidence 3444557899999999999763
No 74
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=34.79 E-value=4.8 Score=33.71 Aligned_cols=33 Identities=24% Similarity=0.499 Sum_probs=7.2
Q ss_pred ChhHHHHHHHHHHHhhhhcce----eEEEecCCCCCc
Q 042916 1 MAKLLLLHLLAVLSIALTSHA----AQYFVGDTSGWD 33 (189)
Q Consensus 1 M~~~~~~~l~~~~~~~~~~~a----~~y~VGd~~GW~ 33 (189)
|.|+++.++++++++...+.+ ..+.||...||.
T Consensus 1 MKk~ll~~a~~~~~~~~~A~Aa~~~~~~yvg~~~G~~ 37 (346)
T 3nb3_A 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWS 37 (346)
T ss_dssp ---------------------CCCTTEEEEEEEEEEE
T ss_pred CchhHHHHHHHHHHhhhhhhhccccCCceEEEeeeee
Confidence 778765544443322222222 347777665654
No 75
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=30.55 E-value=23 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.3
Q ss_pred EEEccCCcceEEEeCCCCCC-CCCCeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYC-FGGMKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~ 121 (189)
.|..+++|.++|.|....|| ..||.-.+.|...
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~ 308 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGA 308 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCC
Confidence 56778899999999999998 7899988888754
No 76
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=30.37 E-value=55 Score=27.66 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred ceEeCCEEEEEecCC-------C-c-eEEeCc--ccCCCCCCCCCccccccCCeEEEccCCcceEEEeCCCC--CCC-CC
Q 042916 46 VFKVGDVLVFSYSAS-------N-S-VTEVTK--QNFDTCNISNPLKTYSNGNTTVTLSAPGDRYFVSGNRL--YCF-GG 111 (189)
Q Consensus 46 tF~vGD~L~F~y~~~-------~-s-V~~V~k--~~y~~C~~~~pi~~~~~G~~~v~L~~~G~~YFic~v~~--HC~-~G 111 (189)
+++.||+++++..+. | | +.+... .|--.=....++..-..=...|+++++|+|||-|-... |=. .|
T Consensus 38 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~~~~G 117 (339)
T 2zwn_A 38 HVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHVGVRG 117 (339)
T ss_dssp EEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHTTTSC
T ss_pred EEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccCccCCCCeEEEEEECCCCEEEEEEecCCchhhhhcCC
Q ss_pred CeEEEEecCCCC
Q 042916 112 MKLHVHVPADEV 123 (189)
Q Consensus 112 mKl~I~V~~~~~ 123 (189)
|.-.+.|.....
T Consensus 118 l~G~liV~p~~~ 129 (339)
T 2zwn_A 118 MWGPLIVDPKQP 129 (339)
T ss_dssp CEEEEEEECSSC
T ss_pred ceEeEEecCCCc
No 77
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=29.04 E-value=42 Score=28.16 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.2
Q ss_pred EEEccCCcceEEEeCCCC-CCCCCCeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRL-YCFGGMKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~-HC~~GmKl~I~V~~~ 121 (189)
.|..+++|.++|.|.... |=..||.-.+.|...
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~ 325 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGE 325 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCC
Confidence 577789999999999863 657899999999764
No 78
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=28.52 E-value=1.8e+02 Score=23.02 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.4
Q ss_pred CCCceEeCCEEEE
Q 042916 43 DDKVFKVGDVLVF 55 (189)
Q Consensus 43 ~~~tF~vGD~L~F 55 (189)
....++|||.+..
T Consensus 35 ~~~~l~VG~RV~V 47 (172)
T 2cp6_A 35 GERELKIGDRVLV 47 (172)
T ss_dssp CSSCCCSSCEEEE
T ss_pred CCccCccCCEEEE
Confidence 3467999999987
No 79
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=28.38 E-value=15 Score=27.30 Aligned_cols=12 Identities=42% Similarity=0.719 Sum_probs=10.4
Q ss_pred CceEeCCEEEEE
Q 042916 45 KVFKVGDVLVFS 56 (189)
Q Consensus 45 ~tF~vGD~L~F~ 56 (189)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 568999999994
No 80
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=27.23 E-value=25 Score=29.45 Aligned_cols=31 Identities=16% Similarity=0.015 Sum_probs=27.6
Q ss_pred cCCcceEEEeCCCCCCCCCCeEEEEecCCCC
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKLHVHVPADEV 123 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~ 123 (189)
+.||.+.|-|-+..|=++||...+.|...+.
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCC
Confidence 4689999999999999999999999987654
No 81
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=26.80 E-value=37 Score=29.55 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=29.0
Q ss_pred EEEccCCcceEEEeCCCCCC-CCCCeEEEEecCCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYC-FGGMKLHVHVPADE 122 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC-~~GmKl~I~V~~~~ 122 (189)
.|..+++|.|+|.|....|+ ..||...+.|....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCC
Confidence 57788999999999988887 78998888887654
No 82
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=24.14 E-value=34 Score=31.62 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=29.2
Q ss_pred EEEccCCcceEEEeCCCCCCCCCCeEEEEecCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCFGGMKLHVHVPAD 121 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~~GmKl~I~V~~~ 121 (189)
.|..++||.+.|-|-+..|-..||...+.|...
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~~ 328 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVDR 328 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEECT
T ss_pred EEEeccceEeecccCcccccccccccceeeecc
Confidence 567788999999999999999999999999643
No 83
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=23.57 E-value=66 Score=21.79 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=25.7
Q ss_pred CCceEeCCEEEEEecCCCc-eEEeCcccCCCCCCCCCcc--ccccCCeEEEc
Q 042916 44 DKVFKVGDVLVFSYSASNS-VTEVTKQNFDTCNISNPLK--TYSNGNTTVTL 92 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~~s-V~~V~k~~y~~C~~~~pi~--~~~~G~~~v~L 92 (189)
..+|++||++.=+| +|.+ -+++.-.+++ ..+++. .|++|. ..+|
T Consensus 7 ~~~~~vgd~VmaRW-~Gd~~yYparI~Si~---s~~~~Y~V~fKdgT-~e~L 53 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-PGSVLYYEVQVTSYD---DASHLYTVKYKDGT-ELAL 53 (66)
T ss_dssp SSSSCSSCEEEEEC-TTSSCEEEEEEEEEE---TTTTEEEEEETTSC-EEEE
T ss_pred ceEeecCCEEEEEc-CCCccceEEEEEEec---cCCceEEEEecCCC-EEee
Confidence 46899999999999 5443 4443323333 455543 456743 3344
No 84
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=23.33 E-value=1.1 Score=24.94 Aligned_cols=17 Identities=41% Similarity=0.772 Sum_probs=13.5
Q ss_pred CCceEeCCEEEEEecCC
Q 042916 44 DKVFKVGDVLVFSYSAS 60 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~ 60 (189)
++.|.|.|.|.|.|+.+
T Consensus 4 skpfnvddvlkftftge 20 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGE 20 (27)
T ss_dssp --CCCHHHHHHHHHHCC
T ss_pred CCCcChhheEEEEeccc
Confidence 47899999999999875
No 85
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=23.04 E-value=78 Score=26.54 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=28.4
Q ss_pred EEEccCCcceEEEeCCCCCCC------CCCeEEEEecCCC
Q 042916 89 TVTLSAPGDRYFVSGNRLYCF------GGMKLHVHVPADE 122 (189)
Q Consensus 89 ~v~L~~~G~~YFic~v~~HC~------~GmKl~I~V~~~~ 122 (189)
.|..+.||.+.|-|-+..|-. .||...|.+....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 567789999999999999998 5788888887654
No 86
>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}
Probab=22.92 E-value=22 Score=26.48 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=29.6
Q ss_pred eeEEEecCC---CCCccC-------C----CCCCCCCCCceEeCCEEEEEec
Q 042916 21 AAQYFVGDT---SGWDIS-------S----NLDTWPDDKVFKVGDVLVFSYS 58 (189)
Q Consensus 21 a~~y~VGd~---~GW~~~-------~----~Y~~Wa~~~tF~vGD~L~F~y~ 58 (189)
...|+||+. ..|+.. . +|..|.....+..|..+.|||-
T Consensus 23 e~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyv 74 (131)
T 2z0b_A 23 EVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYF 74 (131)
T ss_dssp CEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEE
T ss_pred CEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEE
Confidence 367899984 469852 2 6788988888888989999994
No 87
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=22.79 E-value=87 Score=26.10 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=28.8
Q ss_pred cCCcceEEEeCCCCCCCCCCeEEEEecCCCCCCC
Q 042916 93 SAPGDRYFVSGNRLYCFGGMKLHVHVPADEVASP 126 (189)
Q Consensus 93 ~~~G~~YFic~v~~HC~~GmKl~I~V~~~~~~~p 126 (189)
+.||.+.|-|-+..|=.+||.-.+.|.......|
T Consensus 244 ~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~~p 277 (313)
T 3tas_A 244 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 277 (313)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTCCCT
T ss_pred CCCEeEEEEeCChHHHHCCCeEEEEEECCCCCCC
Confidence 4589999999999999999999999987765333
No 88
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=21.54 E-value=52 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=15.7
Q ss_pred CCCceEeCCEEEEEecCCCc
Q 042916 43 DDKVFKVGDVLVFSYSASNS 62 (189)
Q Consensus 43 ~~~tF~vGD~L~F~y~~~~s 62 (189)
.+++|.+||.|+|--..+.+
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~ 45 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIEN 45 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCC
T ss_pred EcCCcCCCCEEEEEcCCCCc
Confidence 36789999999987666644
No 89
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.52 E-value=90 Score=21.20 Aligned_cols=46 Identities=26% Similarity=0.373 Sum_probs=26.6
Q ss_pred CCceEeCCEEEEEecCCCceEEeCcccCCCCCCCCCcc--ccccCCeEEEcc
Q 042916 44 DKVFKVGDVLVFSYSASNSVTEVTKQNFDTCNISNPLK--TYSNGNTTVTLS 93 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~~sV~~V~k~~y~~C~~~~pi~--~~~~G~~~v~L~ 93 (189)
..+|++||++.=+|.....-+++.-..++ ..+++. .|++| +..+|.
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSit---s~~~~Y~VkfKdg-T~e~L~ 57 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHD---STSQLYTVKYKDG-TELELK 57 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEE---TTTTEEEEECTTS-CEEEEE
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEec---cCCceEEEEecCC-CEEEec
Confidence 46899999999999933324443323333 455543 45664 334443
No 90
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=20.49 E-value=1.5e+02 Score=26.79 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=47.9
Q ss_pred CCceEeCCEEEEEecCC---C--ceEE--e--Ccc-cCCC-CCC-CCCccccccCCe---EEEcc-CCcceEEEeCCCCC
Q 042916 44 DKVFKVGDVLVFSYSAS---N--SVTE--V--TKQ-NFDT-CNI-SNPLKTYSNGNT---TVTLS-APGDRYFVSGNRLY 107 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~---~--sV~~--V--~k~-~y~~-C~~-~~pi~~~~~G~~---~v~L~-~~G~~YFic~v~~H 107 (189)
..+++.||.|+.++.+. + +|.. + ... ..|. ... ..+| ..|.+ .|+++ ++|++||=|-...|
T Consensus 35 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq~pI---~PG~~~~Y~f~~~~~~GT~wYH~H~~~q 111 (534)
T 1zpu_A 35 DITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQCPI---APGSTMLYNFTVDYNVGTYWYHSHTDGQ 111 (534)
T ss_dssp CEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECSSCCEEEEEECCSSSG
T ss_pred cEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCccccCCc---CCCCeEEEEEEeCccceeEEEEEcCccc
Confidence 36889999999999763 1 1211 1 111 1111 000 0122 23333 67777 89999999998888
Q ss_pred CCCCCeEEEEecCCC
Q 042916 108 CFGGMKLHVHVPADE 122 (189)
Q Consensus 108 C~~GmKl~I~V~~~~ 122 (189)
=..|+.-.+.|....
T Consensus 112 ~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 112 YEDGMKGLFIIKDDS 126 (534)
T ss_dssp GGGTCEEEEEEECTT
T ss_pred ccCcceeeEEeCCCC
Confidence 888999999998653
No 91
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=20.26 E-value=1.7e+02 Score=26.40 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=48.2
Q ss_pred CCceEeCCEEEEEecCC---C--ceEE--e--Cccc-CCC-CCCC-CCccccccCCe---EEEccCCcceEEEeCCCCCC
Q 042916 44 DKVFKVGDVLVFSYSAS---N--SVTE--V--TKQN-FDT-CNIS-NPLKTYSNGNT---TVTLSAPGDRYFVSGNRLYC 108 (189)
Q Consensus 44 ~~tF~vGD~L~F~y~~~---~--sV~~--V--~k~~-y~~-C~~~-~pi~~~~~G~~---~v~L~~~G~~YFic~v~~HC 108 (189)
..+++.||+|+.++.+. + +|.. + .... .|. -..+ .+| ..|.+ .|+++++|++||=|-...|=
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~~I---~PG~s~tY~f~~~~~GT~wYHsH~~~q~ 111 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQCAI---NPGETFFYNFTVDNPGTFFYHGHLGMQR 111 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBCCB---CTTCEEEEEEECCSCEEEEEEECSTTTG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccCCc---CCCCeEEEEEECCCCEEEEEEECchhHH
Confidence 46889999999998653 1 1221 1 1111 111 0000 122 23433 67889999999999988888
Q ss_pred CCCCeEEEEecCCC
Q 042916 109 FGGMKLHVHVPADE 122 (189)
Q Consensus 109 ~~GmKl~I~V~~~~ 122 (189)
..|+.-.+.|....
T Consensus 112 ~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 112 SAGLYGSLIVDPPQ 125 (552)
T ss_dssp GGTCEEEEEEECCT
T ss_pred hccCeeeEEEeCCc
Confidence 88999999887653
No 92
>4dny_A Metalloprotease STCE; metzincin, bacterial zinc metalloprotease, O-linked glycoPro hydrolase; 1.61A {Escherichia coli}
Probab=20.01 E-value=17 Score=27.63 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=7.4
Q ss_pred eCCEEEEEecCCC
Q 042916 49 VGDVLVFSYSASN 61 (189)
Q Consensus 49 vGD~L~F~y~~~~ 61 (189)
-|+.+.|+=+++.
T Consensus 77 ~gK~V~~~S~AgY 89 (126)
T 4dny_A 77 EGKMVRFVSSAGY 89 (126)
T ss_dssp TTCEEEEEEECSS
T ss_pred CCCEEEEEEecCc
Confidence 4556666665554
Done!