BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042918
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 155 LWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTE 214
LW +RPD+ + + F + + RG + PQ K L+HPSI FL HCGWN TTE
Sbjct: 328 LWIIRPDLVIGGSV-IFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTE 386
Query: 215 GVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKIL 274
+ G+ LCWP+FA+Q + +IC ++G + T + + KL I K +
Sbjct: 387 SICAGVPMLCWPFFADQPTDCRFICNEWEIGMEID-TNVKREELAKLINEVIAGDKGKKM 445
Query: 275 KHVPWNSRKRS 285
K +K++
Sbjct: 446 KQKAMELKKKA 456
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 7 ELIEEINRQED-EKISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFI 65
EL+ +N + ++C+++D M + + AAEE ++ Y + S+ + LLN +M F
Sbjct: 105 ELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACS---LLN-VMHFR 160
Query: 66 SLFISG 71
S G
Sbjct: 161 SFVERG 166
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 149 SRNRFNLWAVR-PDMTDNSN--DDAYQ--------KGFQDGVGTRGQMVGC-TPQQKFLS 196
S RF LW +R P NS+ D Q GF + RG ++ PQ + L+
Sbjct: 296 SEQRF-LWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLA 354
Query: 197 HPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLN 234
HPS FL HCGWN T E V +G+ + WP +AEQ +N
Sbjct: 355 HPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 173 KGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQF 232
+GF + G +V PQ + L+H ++ F+ HCGWN E V+ G+ +C P+F +Q
Sbjct: 317 EGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQR 376
Query: 233 LNESYICAIRKVGQR 247
LN + + ++G R
Sbjct: 377 LNGRMVEDVLEIGVR 391
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 155 LWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTE 214
+W+ R D + KGF + T+G++V PQ + L H S+ FL H GWN E
Sbjct: 306 IWSFRGD-----PKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLE 360
Query: 215 GVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNK---TKMGSSQGKKLTTRWIKCSVM 271
+ G+ + P+F +Q LN ++ ++G + TK + +LT K +M
Sbjct: 361 CIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIM 420
Query: 272 K 272
+
Sbjct: 421 R 421
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 182 RGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLN 234
+G + G PQ + L+H +I F+ HCGWN E + G+ L WP +AEQ LN
Sbjct: 333 KGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLN 385
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 182 RGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLN 234
+G + G PQ + L+H +I F+ HCGWN E + G+ L WP +AEQ LN
Sbjct: 333 KGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLN 385
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 177 DGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNES 236
D +G ++ PQ L HP F+ H G N E + +G+ + P FA+Q N +
Sbjct: 64 DTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIA 123
Query: 237 YICA 240
+ A
Sbjct: 124 HXKA 127
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 189 TPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAI 241
PQ L+ S F+ H G T E +SN + + P AEQ +N I +
Sbjct: 313 VPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
>pdb|2B3W|A Chain A, Nmr Structure Of The E.Coli Protein Ybia, Northeast
Structural Genomics Target Et24
Length = 168
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 224 CWP----YF-AEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRW--IKCSVMK 272
WP YF A++FL+E Y IR+V +MG + K L W +K VM+
Sbjct: 43 TWPTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRDRSKPLRKNWESVKEQVMR 98
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 168 DDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPY 227
DD YQ + G GT G + PQ L A R NPT +F C Y
Sbjct: 336 DDDYQLPYVVGNGTEGCLPAFPPQVFTLPQYGYATLNRDNTENPTERS-----SFFCLEY 390
Query: 228 FAEQFL 233
F + L
Sbjct: 391 FPSKML 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,011,554
Number of Sequences: 62578
Number of extensions: 294144
Number of successful extensions: 534
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 13
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)