Query 042918
Match_columns 285
No_of_seqs 179 out of 1445
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 19:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 7.1E-49 2.4E-53 367.1 12.8 260 3-272 101-415 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 3.4E-44 1.2E-48 338.8 17.5 273 2-278 94-439 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 2.3E-44 7.9E-49 340.2 13.6 265 2-273 100-441 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 1.9E-43 6.6E-48 331.7 13.0 259 4-272 97-413 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 1.6E-40 5.4E-45 312.5 13.2 256 2-269 100-423 (463)
6 2iya_A OLEI, oleandomycin glyc 99.9 2.5E-26 8.5E-31 212.7 17.2 242 18-277 108-395 (424)
7 1iir_A Glycosyltransferase GTF 99.9 1.5E-26 5.1E-31 213.9 7.3 249 6-276 81-373 (415)
8 1rrv_A Glycosyltransferase GTF 99.9 1.2E-25 4.2E-30 207.8 8.8 249 6-279 82-377 (416)
9 4amg_A Snogd; transferase, pol 99.9 1.1E-24 3.7E-29 199.5 14.7 96 155-266 272-367 (400)
10 2iyf_A OLED, oleandomycin glyc 99.9 1.1E-21 3.8E-26 181.5 16.6 243 18-276 103-372 (430)
11 3h4t_A Glycosyltransferase GTF 99.9 1.1E-21 3.9E-26 180.7 11.9 241 19-278 92-358 (404)
12 3rsc_A CALG2; TDP, enediyne, s 99.8 1.1E-20 3.8E-25 173.9 15.7 243 18-277 117-387 (415)
13 2p6p_A Glycosyl transferase; X 99.8 6.5E-21 2.2E-25 173.8 12.6 222 19-278 107-354 (384)
14 3ia7_A CALG4; glycosysltransfe 99.8 4.1E-20 1.4E-24 168.8 16.1 243 18-277 101-372 (402)
15 2yjn_A ERYCIII, glycosyltransf 99.8 2.9E-20 9.8E-25 173.0 14.0 92 181-278 319-410 (441)
16 4fzr_A SSFS6; structural genom 99.8 6.2E-19 2.1E-23 161.5 10.1 92 181-278 284-375 (398)
17 2o6l_A UDP-glucuronosyltransfe 99.8 1E-18 3.4E-23 141.8 8.5 93 182-278 69-161 (170)
18 3oti_A CALG3; calicheamicin, T 99.7 2.3E-17 7.8E-22 151.1 9.8 79 181-265 283-363 (398)
19 3tsa_A SPNG, NDP-rhamnosyltran 99.7 1.2E-16 4.2E-21 145.6 13.8 91 180-276 269-361 (391)
20 3otg_A CALG1; calicheamicin, T 99.7 1.1E-15 3.9E-20 139.9 15.3 91 180-276 291-381 (412)
21 3s2u_A UDP-N-acetylglucosamine 99.3 2.4E-11 8.2E-16 110.3 13.8 95 181-281 235-335 (365)
22 2jzc_A UDP-N-acetylglucosamine 98.8 8.7E-10 3E-14 93.1 3.0 73 184-267 117-195 (224)
23 1f0k_A MURG, UDP-N-acetylgluco 98.5 8.2E-08 2.8E-12 85.8 4.2 81 182-268 238-322 (364)
24 3hbm_A UDP-sugar hydrolase; PS 98.0 7.3E-06 2.5E-10 71.5 5.4 65 182-250 209-274 (282)
25 1vgv_A UDP-N-acetylglucosamine 96.8 0.0026 9E-08 56.6 7.5 89 181-283 263-355 (384)
26 2f9f_A First mannosyl transfer 96.4 0.0024 8.4E-08 50.8 3.9 82 181-273 78-164 (177)
27 3beo_A UDP-N-acetylglucosamine 95.9 0.018 6.2E-07 50.8 7.5 89 181-283 263-355 (375)
28 1v4v_A UDP-N-acetylglucosamine 95.8 0.0069 2.4E-07 53.8 4.3 77 182-272 256-335 (376)
29 2gek_A Phosphatidylinositol ma 95.2 0.013 4.6E-07 52.1 4.1 81 181-271 263-349 (406)
30 3c48_A Predicted glycosyltrans 94.8 0.02 6.9E-07 51.7 4.1 81 181-271 306-391 (438)
31 2iw1_A Lipopolysaccharide core 94.6 0.038 1.3E-06 48.5 5.3 81 182-271 254-337 (374)
32 3okp_A GDP-mannose-dependent a 94.2 0.049 1.7E-06 48.1 5.1 79 180-269 252-342 (394)
33 2xci_A KDO-transferase, 3-deox 94.2 0.018 6.3E-07 51.6 2.3 56 208-271 291-346 (374)
34 2bfw_A GLGA glycogen synthase; 93.9 0.061 2.1E-06 42.9 4.6 91 182-283 96-194 (200)
35 3dzc_A UDP-N-acetylglucosamine 93.5 0.12 4.1E-06 46.6 6.4 79 181-273 288-369 (396)
36 3ot5_A UDP-N-acetylglucosamine 93.4 0.086 3E-06 47.8 5.3 78 181-272 282-362 (403)
37 3fro_A GLGA glycogen synthase; 92.5 0.079 2.7E-06 47.5 3.6 76 184-270 314-394 (439)
38 2vsy_A XCC0866; transferase, g 92.4 0.22 7.4E-06 46.7 6.7 83 181-270 434-521 (568)
39 2x6q_A Trehalose-synthase TRET 91.9 0.13 4.3E-06 46.2 4.2 77 181-271 293-379 (416)
40 3rhz_A GTF3, nucleotide sugar 91.9 0.088 3E-06 46.7 3.1 87 182-282 215-314 (339)
41 4hwg_A UDP-N-acetylglucosamine 91.8 0.29 9.9E-06 44.1 6.4 77 182-272 264-343 (385)
42 2r60_A Glycosyl transferase, g 91.5 0.12 4.2E-06 47.6 3.8 79 181-269 335-422 (499)
43 2jjm_A Glycosyl transferase, g 91.2 0.074 2.5E-06 47.3 1.9 81 182-272 268-351 (394)
44 2x0d_A WSAF; GT4 family, trans 91.1 0.16 5.6E-06 46.0 4.1 84 182-276 296-384 (413)
45 3qhp_A Type 1 capsular polysac 89.5 0.19 6.7E-06 38.6 2.8 88 182-281 57-151 (166)
46 2iuy_A Avigt4, glycosyltransfe 89.5 0.25 8.5E-06 42.9 3.7 77 181-267 212-304 (342)
47 3oy2_A Glycosyltransferase B73 87.3 0.24 8.1E-06 44.2 2.1 42 185-226 258-304 (413)
48 4gyw_A UDP-N-acetylglucosamine 87.3 0.85 2.9E-05 44.6 6.2 50 181-232 580-633 (723)
49 3q3e_A HMW1C-like glycosyltran 85.6 0.39 1.3E-05 46.0 2.7 47 180-226 498-548 (631)
50 2hy7_A Glucuronosyltransferase 85.5 0.67 2.3E-05 41.7 4.2 77 181-273 265-354 (406)
51 1rzu_A Glycogen synthase 1; gl 83.4 0.6 2.1E-05 42.6 2.9 77 182-269 347-438 (485)
52 2qzs_A Glycogen synthase; glyc 82.5 0.68 2.3E-05 42.2 2.9 78 182-269 348-439 (485)
53 3s28_A Sucrose synthase 1; gly 81.4 0.77 2.6E-05 45.5 3.0 50 209-268 678-727 (816)
54 2lpm_A Two-component response 72.8 2.3 7.9E-05 31.5 2.8 40 5-47 42-86 (123)
55 3to5_A CHEY homolog; alpha(5)b 71.5 4.2 0.00014 30.5 4.1 41 7-50 48-97 (134)
56 2q5c_A NTRC family transcripti 70.0 7.3 0.00025 31.3 5.5 42 3-50 129-170 (196)
57 4hwg_A UDP-N-acetylglucosamine 64.9 8.3 0.00028 34.3 5.3 38 4-47 85-124 (385)
58 3gl9_A Response regulator; bet 64.1 10 0.00034 26.9 4.8 43 5-50 35-86 (122)
59 2pju_A Propionate catabolism o 62.0 10 0.00035 31.2 4.9 40 3-48 141-180 (225)
60 3t6k_A Response regulator rece 56.1 16 0.00056 26.3 4.8 42 6-50 38-88 (136)
61 3f6p_A Transcriptional regulat 53.4 22 0.00074 24.9 5.0 43 5-50 35-83 (120)
62 3m6m_D Sensory/regulatory prot 52.7 15 0.0005 26.9 4.0 41 6-49 48-99 (143)
63 3dzc_A UDP-N-acetylglucosamine 51.9 16 0.00054 32.4 4.8 29 19-47 111-142 (396)
64 3ot5_A UDP-N-acetylglucosamine 47.4 22 0.00074 31.7 5.0 29 19-47 114-145 (403)
65 3h1g_A Chemotaxis protein CHEY 43.9 41 0.0014 23.7 5.3 43 6-50 40-91 (129)
66 1dbw_A Transcriptional regulat 43.4 39 0.0013 23.5 5.1 42 6-50 37-85 (126)
67 3c3m_A Response regulator rece 41.7 36 0.0012 24.3 4.7 41 6-49 37-86 (138)
68 3nhm_A Response regulator; pro 40.5 42 0.0014 23.5 4.9 42 5-49 36-86 (133)
69 3a10_A Response regulator; pho 39.7 54 0.0019 22.2 5.3 41 6-49 35-82 (116)
70 3grc_A Sensor protein, kinase; 39.4 38 0.0013 24.1 4.5 42 5-49 39-89 (140)
71 2vqe_B 30S ribosomal protein S 38.7 25 0.00085 29.5 3.6 32 19-50 158-191 (256)
72 1tmy_A CHEY protein, TMY; chem 38.5 40 0.0014 23.1 4.4 42 6-50 37-85 (120)
73 4e7p_A Response regulator; DNA 38.2 40 0.0014 24.5 4.5 43 5-50 55-104 (150)
74 3nb0_A Glycogen [starch] synth 38.0 18 0.00062 35.1 2.9 41 187-227 499-550 (725)
75 3eod_A Protein HNR; response r 37.4 46 0.0016 23.3 4.6 43 5-50 40-89 (130)
76 2qxy_A Response regulator; reg 37.3 44 0.0015 23.8 4.6 42 5-50 37-85 (142)
77 3rqi_A Response regulator prot 37.2 32 0.0011 26.3 3.9 43 5-50 40-89 (184)
78 2qr3_A Two-component system re 36.9 42 0.0014 23.8 4.4 43 5-50 36-90 (140)
79 2qzj_A Two-component response 36.9 47 0.0016 23.7 4.6 42 6-50 38-85 (136)
80 3b2n_A Uncharacterized protein 36.7 40 0.0014 23.9 4.2 42 6-50 39-87 (133)
81 3hv2_A Response regulator/HD d 36.7 36 0.0012 24.8 4.1 43 5-50 47-96 (153)
82 3gi1_A LBP, laminin-binding pr 36.4 45 0.0015 28.2 5.0 43 3-48 215-259 (286)
83 1v4v_A UDP-N-acetylglucosamine 36.3 43 0.0015 28.7 5.0 29 19-47 91-122 (376)
84 3bbn_B Ribosomal protein S2; s 36.3 25 0.00085 29.0 3.2 31 19-49 157-189 (231)
85 1pq4_A Periplasmic binding pro 36.3 47 0.0016 28.1 5.1 46 3-51 224-271 (291)
86 2rjn_A Response regulator rece 36.2 40 0.0014 24.6 4.2 43 5-50 40-89 (154)
87 2a9o_A Response regulator; ess 35.7 49 0.0017 22.5 4.5 42 6-50 35-82 (120)
88 3crn_A Response regulator rece 35.3 57 0.002 22.9 4.9 42 6-50 37-85 (132)
89 1xhf_A DYE resistance, aerobic 34.8 62 0.0021 22.2 4.9 42 6-50 37-84 (123)
90 3cu5_A Two component transcrip 34.6 47 0.0016 23.8 4.4 40 6-48 39-85 (141)
91 1srr_A SPO0F, sporulation resp 33.8 44 0.0015 23.1 3.9 42 6-50 37-85 (124)
92 1f0k_A MURG, UDP-N-acetylgluco 33.8 62 0.0021 27.4 5.6 29 19-47 96-126 (364)
93 3qxc_A Dethiobiotin synthetase 33.5 43 0.0015 27.6 4.3 44 4-51 120-172 (242)
94 2pl1_A Transcriptional regulat 33.3 73 0.0025 21.7 5.1 42 6-50 34-82 (121)
95 1p6q_A CHEY2; chemotaxis, sign 33.1 54 0.0018 22.8 4.4 42 5-49 40-90 (129)
96 2rdm_A Response regulator rece 32.9 58 0.002 22.6 4.6 42 6-49 39-88 (132)
97 3p9x_A Phosphoribosylglycinami 32.6 67 0.0023 26.0 5.2 46 3-48 14-60 (211)
98 1zgz_A Torcad operon transcrip 32.6 60 0.0021 22.2 4.5 32 19-50 46-83 (122)
99 2r25_B Osmosensing histidine p 32.5 73 0.0025 22.4 5.1 32 19-50 52-91 (133)
100 2jk1_A HUPR, hydrogenase trans 32.4 57 0.002 23.1 4.5 41 6-49 34-81 (139)
101 3n0r_A Response regulator; sig 32.1 57 0.0019 27.4 4.9 41 6-49 195-242 (286)
102 3i42_A Response regulator rece 31.8 53 0.0018 22.8 4.1 42 5-49 36-86 (127)
103 1mb3_A Cell division response 31.8 47 0.0016 22.9 3.8 30 19-48 45-83 (124)
104 1jbe_A Chemotaxis protein CHEY 31.7 67 0.0023 22.2 4.7 42 6-50 39-89 (128)
105 3pdi_B Nitrogenase MOFE cofact 31.6 55 0.0019 29.8 5.1 34 4-46 366-399 (458)
106 3q9s_A DNA-binding response re 31.1 66 0.0023 26.0 5.1 43 5-50 70-118 (249)
107 1yio_A Response regulatory pro 31.0 51 0.0018 25.4 4.3 41 6-49 38-85 (208)
108 3lte_A Response regulator; str 30.8 69 0.0024 22.3 4.7 42 5-49 39-88 (132)
109 3cz5_A Two-component response 29.8 77 0.0026 22.9 4.9 43 5-50 40-89 (153)
110 2o1e_A YCDH; alpha-beta protei 28.9 56 0.0019 28.0 4.4 44 3-49 226-271 (312)
111 1vi6_A 30S ribosomal protein S 28.6 51 0.0017 26.7 3.8 31 19-49 115-147 (208)
112 3cx3_A Lipoprotein; zinc-bindi 28.6 51 0.0018 27.7 4.0 43 3-48 213-257 (284)
113 3hzh_A Chemotaxis response reg 28.5 58 0.002 23.9 4.0 44 5-49 70-120 (157)
114 3c97_A Signal transduction his 27.9 89 0.003 22.1 4.9 30 6-38 44-75 (140)
115 1kgs_A DRRD, DNA binding respo 27.7 75 0.0026 24.8 4.8 42 6-50 36-84 (225)
116 1zh2_A KDP operon transcriptio 27.5 65 0.0022 21.9 3.9 32 19-50 45-82 (121)
117 3h5i_A Response regulator/sens 27.5 1E+02 0.0036 21.7 5.2 42 5-48 38-86 (140)
118 2w36_A Endonuclease V; hypoxan 27.2 19 0.00065 29.6 0.9 39 5-47 93-138 (225)
119 3mm4_A Histidine kinase homolo 27.1 47 0.0016 26.0 3.4 32 19-50 119-161 (206)
120 1ys7_A Transcriptional regulat 27.0 71 0.0024 25.1 4.5 40 6-48 41-87 (233)
121 3n53_A Response regulator rece 26.8 49 0.0017 23.5 3.2 42 5-49 35-85 (140)
122 3bch_A 40S ribosomal protein S 26.6 56 0.0019 27.3 3.8 31 19-49 151-183 (253)
123 3tqr_A Phosphoribosylglycinami 26.6 89 0.003 25.3 5.0 46 3-48 17-62 (215)
124 3r0j_A Possible two component 26.4 64 0.0022 25.9 4.2 42 6-50 57-105 (250)
125 3eq2_A Probable two-component 26.3 56 0.0019 28.6 4.0 41 6-49 39-86 (394)
126 4ds3_A Phosphoribosylglycinami 26.1 81 0.0028 25.4 4.6 46 3-48 19-65 (209)
127 3sz8_A 2-dehydro-3-deoxyphosph 26.0 2.3E+02 0.0077 24.0 7.5 67 201-268 164-269 (285)
128 2b4a_A BH3024; flavodoxin-like 25.9 78 0.0027 22.3 4.2 39 6-47 49-95 (138)
129 3hh8_A Metal ABC transporter s 25.9 72 0.0025 27.0 4.5 39 3-44 219-259 (294)
130 2qv0_A Protein MRKE; structura 25.6 93 0.0032 22.0 4.6 32 5-39 44-77 (143)
131 2prs_A High-affinity zinc upta 25.6 62 0.0021 27.2 4.0 44 3-49 210-255 (284)
132 3j20_B 30S ribosomal protein S 25.6 57 0.002 26.2 3.5 31 19-49 111-143 (202)
133 1meo_A Phosophoribosylglycinam 25.0 1E+02 0.0034 24.8 5.0 45 4-48 13-58 (209)
134 3goc_A Endonuclease V; alpha-b 25.0 72 0.0025 26.3 4.1 40 4-47 96-142 (237)
135 1a04_A Nitrate/nitrite respons 25.0 66 0.0023 25.0 3.9 42 6-50 41-89 (215)
136 1byi_A Dethiobiotin synthase; 24.5 93 0.0032 24.4 4.8 43 4-50 97-148 (224)
137 3fgn_A Dethiobiotin synthetase 24.1 74 0.0025 26.3 4.2 42 5-50 116-167 (251)
138 3cg4_A Response regulator rece 23.9 77 0.0026 22.4 3.8 23 5-30 40-62 (142)
139 1mvo_A PHOP response regulator 23.7 90 0.0031 21.8 4.2 41 6-49 37-84 (136)
140 3c3w_A Two component transcrip 23.6 56 0.0019 25.8 3.2 41 6-49 37-84 (225)
141 1vgv_A UDP-N-acetylglucosamine 23.6 71 0.0024 27.3 4.1 29 19-47 86-117 (384)
142 2j48_A Two-component sensor ki 23.6 1E+02 0.0035 20.5 4.3 41 6-49 35-84 (119)
143 4dad_A Putative pilus assembly 23.6 70 0.0024 22.8 3.6 32 19-50 67-105 (146)
144 2qsj_A DNA-binding response re 23.5 65 0.0022 23.3 3.4 43 5-49 38-87 (154)
145 2oqr_A Sensory transduction pr 23.4 78 0.0027 24.8 4.1 42 6-50 38-85 (230)
146 2zkq_b 40S ribosomal protein S 23.4 63 0.0021 27.7 3.5 32 19-50 118-151 (295)
147 3u7q_A Nitrogenase molybdenum- 22.8 92 0.0031 28.6 4.9 25 19-46 417-441 (492)
148 3tl4_X Glutaminyl-tRNA synthet 22.5 28 0.00097 27.7 1.1 23 238-268 107-129 (187)
149 2iz6_A Molybdenum cofactor car 22.3 2.4E+02 0.0083 21.8 6.6 28 202-229 111-141 (176)
150 2qvg_A Two component response 22.2 1.1E+02 0.0037 21.5 4.4 32 19-50 59-99 (143)
151 1jkx_A GART;, phosphoribosylgl 22.0 1.3E+02 0.0043 24.2 5.0 44 4-47 13-57 (212)
152 4a1f_A DNAB helicase, replicat 21.7 80 0.0027 27.5 4.0 43 4-47 142-203 (338)
153 3u5c_A 40S ribosomal protein S 21.6 71 0.0024 26.6 3.4 32 19-50 117-150 (252)
154 3bre_A Probable two-component 21.0 84 0.0029 26.7 4.1 42 6-50 53-103 (358)
155 3of5_A Dethiobiotin synthetase 20.9 76 0.0026 25.7 3.5 32 19-50 110-150 (228)
156 3j21_Q PFEL19, 50S ribosomal p 20.8 21 0.00072 27.3 0.0 34 236-269 9-49 (150)
157 2jba_A Phosphate regulon trans 20.7 63 0.0022 22.3 2.7 32 19-50 46-86 (127)
158 2etv_A Iron(III) ABC transport 20.6 1E+02 0.0034 26.5 4.5 30 19-48 96-126 (346)
159 3ga2_A Endonuclease V; alpha-b 20.6 92 0.0032 25.9 3.9 40 4-47 98-144 (246)
160 2ayx_A Sensor kinase protein R 20.5 77 0.0026 25.7 3.5 42 6-50 163-211 (254)
161 3r8n_B 30S ribosomal protein S 20.4 59 0.002 26.5 2.7 32 19-50 149-182 (218)
162 2gwr_A DNA-binding response re 20.2 68 0.0023 25.5 3.1 31 19-49 49-85 (238)
163 4hn9_A Iron complex transport 20.1 1E+02 0.0034 26.3 4.3 31 19-49 116-146 (335)
164 3luf_A Two-component system re 20.1 1.3E+02 0.0045 24.4 4.9 42 6-49 158-208 (259)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=7.1e-49 Score=367.12 Aligned_cols=260 Identities=18% Similarity=0.266 Sum_probs=193.5
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhh-ccCCcccccccccc
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISL-FISGTAIKKHMIQL 81 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~ 81 (285)
..++++++++..+.+.++||||+|.+++|+.++|+++|||++.||+++++.+++++ |++.+... +.... ..+..+..
T Consensus 101 ~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 178 (454)
T 3hbf_A 101 ENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHV-YTDLIREKTGSKEV-HDVKSIDV 178 (454)
T ss_dssp HHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHH-THHHHHHTCCHHHH-TTSSCBCC
T ss_pred HHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHH-hhHHHHhhcCCCcc-cccccccc
Confidence 35667776653221147999999999999999999999999999999999998888 77665433 10000 00111122
Q ss_pred CCCCcc-------------------------cccccCcceEEEcccccCChhhh----hcCCCcccccccccccCCC--C
Q 042918 82 APTMAT-------------------------IHSTKLGEWMLCKSKYDLEPGAL----ALIPELLPLGQLLASNRLG--N 130 (285)
Q Consensus 82 ~pg~~~-------------------------~~~~~~~~~vlvns~~~le~~~~----~~~~~v~~VGpl~~~~~~~--~ 130 (285)
+||+|+ .+.+.+++++|+|||++||+++. +.++++++|||++.....+ .
T Consensus 179 iPg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~ 258 (454)
T 3hbf_A 179 LPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVS 258 (454)
T ss_dssp STTSCCBCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEECCCHHHHSCCSCCC
T ss_pred CCCCCCcChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcCCCEEEECCccccccccccc
Confidence 333322 12245688999999999999753 4468999999999743211 1
Q ss_pred CCC---CCCC----CCCceeeeeecC---ccce-------------EEEEEcCCCCCCCCccccccCccccccccceeee
Q 042918 131 SAG---FFWP----EDSTLFSTESYS---RNRF-------------NLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVG 187 (285)
Q Consensus 131 ~~~---~~~~----~~~~~~s~~~~~---~~q~-------------~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~ 187 (285)
+.. .+++ ...+|++++++. .+|+ .||+++++ ... .+|++|++|+++|++|++
T Consensus 259 ~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~----~~~-~lp~~~~~~~~~~~~vv~ 333 (454)
T 3hbf_A 259 DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKE-KLPKGFLERTKTKGKIVA 333 (454)
T ss_dssp CTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC----HHH-HSCTTHHHHTTTTEEEES
T ss_pred chHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc----chh-cCCHhHHhhcCCceEEEe
Confidence 111 1111 123566644433 2332 29999875 122 689999999999999999
Q ss_pred ecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHH
Q 042918 188 CTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIK 267 (285)
Q Consensus 188 w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~ 267 (285)
|+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.++.+ .+++++|+++|++
T Consensus 334 w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~---~~~~~~l~~av~~ 410 (454)
T 3hbf_A 334 WAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNG---VLTKESIKKALEL 410 (454)
T ss_dssp SCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGG---SCCHHHHHHHHHH
T ss_pred eCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCC---CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998867999999864 4999999999999
Q ss_pred HHHHH
Q 042918 268 CSVMK 272 (285)
Q Consensus 268 ~~~~~ 272 (285)
++.++
T Consensus 411 ll~~~ 415 (454)
T 3hbf_A 411 TMSSE 415 (454)
T ss_dssp HHSSH
T ss_pred HHCCC
Confidence 66544
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=3.4e-44 Score=338.84 Aligned_cols=273 Identities=20% Similarity=0.290 Sum_probs=195.1
Q ss_pred chHHHHHHHHhhhcCCCCc-cEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhhccCCccccccccc
Q 042918 2 RGKLEELIEEINRQEDEKI-SCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISLFISGTAIKKHMIQ 80 (285)
Q Consensus 2 ~~~~~~ll~~l~~~~~~~~-d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 80 (285)
.++++++++++... .++ ||||+|.++.|+..+|+++|||++.|+++++..+..++ |+|.+...+...+...+. ..
T Consensus 94 ~~~l~~ll~~~~~~--~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~ 169 (480)
T 2vch_A 94 NPELRKVFDSFVEG--GRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFL-HLPKLDETVSCEFRELTE-PL 169 (480)
T ss_dssp HHHHHHHHHHHHHT--TCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHH-HHHHHHHHCCSCGGGCSS-CB
T ss_pred hHHHHHHHHHhccC--CCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHH-HHHHHHhcCCCcccccCC-cc
Confidence 45788888876422 368 99999999999999999999999999999988887777 777554321100000000 00
Q ss_pred cCCCCcc------------------------cccccCcceEEEcccccCChhhhhc-------CCCcccccccccccCC-
Q 042918 81 LAPTMAT------------------------IHSTKLGEWMLCKSKYDLEPGALAL-------IPELLPLGQLLASNRL- 128 (285)
Q Consensus 81 ~~pg~~~------------------------~~~~~~~~~vlvns~~~le~~~~~~-------~~~v~~VGpl~~~~~~- 128 (285)
..||+++ ...+++++++++||+++||..+... .+++++|||++.....
T Consensus 170 ~~Pg~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~~~v~~vGpl~~~~~~~ 249 (480)
T 2vch_A 170 MLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQE 249 (480)
T ss_dssp CCTTCCCBCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTCCCEEECCCCCCCSCSC
T ss_pred cCCCCCCCChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCCCcEEEEeccccccccc
Confidence 1111111 1223466789999999999864432 3689999999875321
Q ss_pred -----CCCCCCCCC----CCCceeeeeecC---cc-------------ceEEEEEcCCCCC-----------CCCccccc
Q 042918 129 -----GNSAGFFWP----EDSTLFSTESYS---RN-------------RFNLWAVRPDMTD-----------NSNDDAYQ 172 (285)
Q Consensus 129 -----~~~~~~~~~----~~~~~~s~~~~~---~~-------------q~~lW~~~~~~~~-----------~~~~~~lp 172 (285)
+.+...+++ ...+|++++++. .+ +..||+++..... .+..+.+|
T Consensus 250 ~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp 329 (480)
T 2vch_A 250 AKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLP 329 (480)
T ss_dssp C-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSC
T ss_pred cCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcC
Confidence 111011111 223567755543 22 2239999875321 11112689
Q ss_pred cCccccccccceeee-ecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecC
Q 042918 173 KGFQDGVGTRGQMVG-CTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKT 251 (285)
Q Consensus 173 ~~f~~~~~~~~~v~~-w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~ 251 (285)
+||++|++++|+++. |+||.+||+|++|++|||||||||++||+++|||||+||+++||+.||+++++.+|+|+.+...
T Consensus 330 ~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~ 409 (480)
T 2vch_A 330 PGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG 409 (480)
T ss_dssp TTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCC
T ss_pred HHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecc
Confidence 999999999999885 9999999999999999999999999999999999999999999999999985458999999875
Q ss_pred CCCCccHHHHHHHHHHHHH---HHHhhccC
Q 042918 252 KMGSSQGKKLTTRWIKCSV---MKILKHVP 278 (285)
Q Consensus 252 ~~~~~~~~~l~~ai~~~~~---~~~~~~~~ 278 (285)
+++.+++++|+++|++++. .+++++.|
T Consensus 410 ~~~~~~~~~l~~av~~vl~~~~~~~~r~~a 439 (480)
T 2vch_A 410 DDGLVRREEVARVVKGLMEGEEGKGVRNKM 439 (480)
T ss_dssp TTSCCCHHHHHHHHHHHHTSTHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHHhcCcchHHHHHHH
Confidence 4456999999999999765 44555443
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=2.3e-44 Score=340.25 Aligned_cols=265 Identities=24% Similarity=0.462 Sum_probs=191.4
Q ss_pred chHHHHHHHHhhhc--CCCCccEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhhccCCcc-----c
Q 042918 2 RGKLEELIEEINRQ--EDEKISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISLFISGTA-----I 74 (285)
Q Consensus 2 ~~~~~~ll~~l~~~--~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-----~ 74 (285)
.++++++++++.++ + .+|||||+|.+++|+..+|+++|||++.|+++++.....+. ++|.+...++.... .
T Consensus 100 ~~~l~~ll~~l~~~~~~-~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~ 177 (482)
T 2pq6_A 100 LKPYCELLTRLNHSTNV-PPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVM-HFRSFVERGIIPFKDESYLT 177 (482)
T ss_dssp HHHHHHHHHHHHTCSSS-CCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHT-THHHHHHTTCSSCSSGGGGT
T ss_pred hHHHHHHHHHHhhhccC-CCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHH-HHHHHHhcCCCCCccccccc
Confidence 56788999988642 2 47999999999999999999999999999999988776665 55543332221000 0
Q ss_pred c---ccccccCCCCcc--------------------------cccccCcceEEEcccccCChhh----hhcCCCcccccc
Q 042918 75 K---KHMIQLAPTMAT--------------------------IHSTKLGEWMLCKSKYDLEPGA----LALIPELLPLGQ 121 (285)
Q Consensus 75 ~---~~~~~~~pg~~~--------------------------~~~~~~~~~vlvns~~~le~~~----~~~~~~v~~VGp 121 (285)
+ +..+..+|+++. .+.+.+++++|+||+++||+++ ++.++++++|||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~~~~~~~~~~~v~~VGP 257 (482)
T 2pq6_A 178 NGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGP 257 (482)
T ss_dssp SSGGGCBCCSSTTCCSCBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHHHHHTTCTTEEECCC
T ss_pred cccccCccccCCCCCCCchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHHHHHHHHhCCcEEEEcC
Confidence 0 111112232211 1123468899999999999874 444578999999
Q ss_pred cccc-cCC--------------CCCC--CCCCCC----CCceeeeeecCc---c-------------ceEEEEEcCCCCC
Q 042918 122 LLAS-NRL--------------GNSA--GFFWPE----DSTLFSTESYSR---N-------------RFNLWAVRPDMTD 164 (285)
Q Consensus 122 l~~~-~~~--------------~~~~--~~~~~~----~~~~~s~~~~~~---~-------------q~~lW~~~~~~~~ 164 (285)
++.. ... +.+. ..+++. ..+|++++++.. + +..||+++.+...
T Consensus 258 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 337 (482)
T 2pq6_A 258 LPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVI 337 (482)
T ss_dssp HHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGST
T ss_pred CcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccc
Confidence 9874 211 0110 011111 235666555432 2 2239999865221
Q ss_pred CCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcc
Q 042918 165 NSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKV 244 (285)
Q Consensus 165 ~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gv 244 (285)
+... .+|++|++++++|++|++|+||.++|+|+++++|||||||||++||+++|||||+||+++||+.||+++++.+|+
T Consensus 338 ~~~~-~l~~~~~~~~~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~ 416 (482)
T 2pq6_A 338 GGSV-IFSSEFTNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEI 416 (482)
T ss_dssp TTGG-GSCHHHHHHHTTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCC
T ss_pred cccc-cCcHhHHHhcCCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCE
Confidence 1112 488899989999999999999999999999999999999999999999999999999999999999999755899
Q ss_pred eEEeecCCCCCccHHHHHHHHHHHHHHHH
Q 042918 245 GQRFNKTKMGSSQGKKLTTRWIKCSVMKI 273 (285)
Q Consensus 245 G~~l~~~~~~~~~~~~l~~ai~~~~~~~~ 273 (285)
|+.++ .+ +++++|+++|++++.+++
T Consensus 417 g~~l~-~~---~~~~~l~~~i~~ll~~~~ 441 (482)
T 2pq6_A 417 GMEID-TN---VKREELAKLINEVIAGDK 441 (482)
T ss_dssp EEECC-SS---CCHHHHHHHHHHHHTSHH
T ss_pred EEEEC-CC---CCHHHHHHHHHHHHcCCc
Confidence 99998 33 899999999999765553
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=1.9e-43 Score=331.69 Aligned_cols=259 Identities=18% Similarity=0.316 Sum_probs=186.8
Q ss_pred HHHHHHHHhhhc-CCCCccEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhh-ccCCc-cccccccc
Q 042918 4 KLEELIEEINRQ-EDEKISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISL-FISGT-AIKKHMIQ 80 (285)
Q Consensus 4 ~~~~ll~~l~~~-~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~-~~~~~-~~~~~~~~ 80 (285)
.++++++++.++ + .+|||||+|.++.|+..+|+++|||++.|+++++..+..+. +.+.+... +.... ......+.
T Consensus 97 ~~~~~l~~l~~~~~-~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 174 (456)
T 2c1x_A 97 SFRQGMVMAVAETG-RPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHV-YIDEIREKIGVSGIQGREDELLN 174 (456)
T ss_dssp HHHHHHHHHHHHHT-CCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHH-THHHHHHHHCSSCCTTCTTCBCT
T ss_pred HHHHHHHHHHhccC-CCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHh-hhHHHHhccCCcccccccccccc
Confidence 466666654322 2 47999999999999999999999999999999988776665 55543221 11000 00001111
Q ss_pred cCCCCcc----------------------c----ccccCcceEEEcccccCChhh----hhcCCCcccccccccccC---
Q 042918 81 LAPTMAT----------------------I----HSTKLGEWMLCKSKYDLEPGA----LALIPELLPLGQLLASNR--- 127 (285)
Q Consensus 81 ~~pg~~~----------------------~----~~~~~~~~vlvns~~~le~~~----~~~~~~v~~VGpl~~~~~--- 127 (285)
.+||++. . +.+.+++++|+||+++||+++ ++..+++++|||++....
T Consensus 175 ~~pg~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~~~~~~vGpl~~~~~~~~ 254 (456)
T 2c1x_A 175 FIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPV 254 (456)
T ss_dssp TSTTCTTCBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHSSCEEECCCHHHHC----
T ss_pred cCCCCCcccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcCCCEEEecCcccCccccc
Confidence 2233221 0 122467899999999999974 445689999999987432
Q ss_pred CCCCC--CCCCC----CCCceeeeeecCc---c-------------ceEEEEEcCCCCCCCCccccccCcccccccccee
Q 042918 128 LGNSA--GFFWP----EDSTLFSTESYSR---N-------------RFNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQM 185 (285)
Q Consensus 128 ~~~~~--~~~~~----~~~~~~s~~~~~~---~-------------q~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v 185 (285)
.+.+. ..+++ ...+|++++++.. + +..||+++.+ ... .+|++|.+++++|++|
T Consensus 255 ~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~----~~~-~l~~~~~~~~~~~~~v 329 (456)
T 2c1x_A 255 VPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDK----ARV-HLPEGFLEKTRGYGMV 329 (456)
T ss_dssp -----CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGG----GGG-GSCTTHHHHHTTTEEE
T ss_pred ccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCc----chh-hCCHHHHhhcCCceEE
Confidence 11111 11111 2234566444321 2 2239999865 122 5889998888899999
Q ss_pred eeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHH
Q 042918 186 VGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRW 265 (285)
Q Consensus 186 ~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai 265 (285)
++|+||.++|+|+++++|||||||||++||+++|||||+||+++||+.||+++++.||+|+.+... .+++++|+++|
T Consensus 330 ~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~---~~~~~~l~~~i 406 (456)
T 2c1x_A 330 VPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGG---VFTKSGLMSCF 406 (456)
T ss_dssp ESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGG---SCCHHHHHHHH
T ss_pred ecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCC---CcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999867999999754 38999999999
Q ss_pred HHHHHHH
Q 042918 266 IKCSVMK 272 (285)
Q Consensus 266 ~~~~~~~ 272 (285)
++++.++
T Consensus 407 ~~ll~~~ 413 (456)
T 2c1x_A 407 DQILSQE 413 (456)
T ss_dssp HHHHHSH
T ss_pred HHHHCCC
Confidence 9976665
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=1.6e-40 Score=312.46 Aligned_cols=256 Identities=20% Similarity=0.290 Sum_probs=185.7
Q ss_pred chHHHHHHHHhhhcCCCCccEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhhccCCcccccc--cc
Q 042918 2 RGKLEELIEEINRQEDEKISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISLFISGTAIKKH--MI 79 (285)
Q Consensus 2 ~~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~ 79 (285)
..+++++++++. + .+|||||+|.++.|+..+|+++|||+++|+++++..+..++ |+|.+...+ .+..... ..
T Consensus 100 ~~~~~~ll~~~~--~-~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~ 173 (463)
T 2acv_A 100 IPHVKATIKTIL--S-NKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLML-SLKNRQIEE--VFDDSDRDHQL 173 (463)
T ss_dssp HHHHHHHHHHHC--C-TTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHH-HGGGSCTTC--CCCCSSGGGCE
T ss_pred hHHHHHHHHhcc--C-CCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHH-HHHhhcccC--CCCCccccCce
Confidence 457888888762 1 47999999999999999999999999999999988877776 665432110 0000000 01
Q ss_pred ccCCCC-ccc-----------------------ccccCcceEEEcccccCChhhhhc-------CCCcccccccccccC-
Q 042918 80 QLAPTM-ATI-----------------------HSTKLGEWMLCKSKYDLEPGALAL-------IPELLPLGQLLASNR- 127 (285)
Q Consensus 80 ~~~pg~-~~~-----------------------~~~~~~~~vlvns~~~le~~~~~~-------~~~v~~VGpl~~~~~- 127 (285)
..+||+ +++ ..+++++++++|||++||++..+. .+++++|||++....
T Consensus 174 ~~~pg~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~~p~~~v~~vGpl~~~~~~ 253 (463)
T 2acv_A 174 LNIPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQ 253 (463)
T ss_dssp ECCTTCSSCEEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHCTTSCCEEECCCCCCSSCC
T ss_pred eECCCCCCCCChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhccccCCcEEEeCCCcccccc
Confidence 123444 221 113467789999999999875432 568999999986431
Q ss_pred CC-C-------CCCCCCC----CCCceeeeeecC----ccc-------------eEEEEEcCCCCCCCCccccccCcccc
Q 042918 128 LG-N-------SAGFFWP----EDSTLFSTESYS----RNR-------------FNLWAVRPDMTDNSNDDAYQKGFQDG 178 (285)
Q Consensus 128 ~~-~-------~~~~~~~----~~~~~~s~~~~~----~~q-------------~~lW~~~~~~~~~~~~~~lp~~f~~~ 178 (285)
.. . +...+++ ....|++++++. .+| ..||+++.+ .. .+|++|.++
T Consensus 254 ~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-----~~-~l~~~~~~~ 327 (463)
T 2acv_A 254 PNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE-----KK-VFPEGFLEW 327 (463)
T ss_dssp CBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC-----GG-GSCTTHHHH
T ss_pred cccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC-----cc-cCChhHHHh
Confidence 10 1 0011111 123566655543 222 239999863 12 578899888
Q ss_pred c--cccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEe-ecCCCC-
Q 042918 179 V--GTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRF-NKTKMG- 254 (285)
Q Consensus 179 ~--~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l-~~~~~~- 254 (285)
+ ++++++++|+||.++|+||++++|||||||||++||+++|||||+||+++||+.||+++++.+|+|+.+ ...+++
T Consensus 328 ~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~ 407 (463)
T 2acv_A 328 MELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 407 (463)
T ss_dssp HHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTC
T ss_pred hccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCC
Confidence 8 889999999999999999999999999999999999999999999999999999999964448999999 321123
Q ss_pred -CccHHHHHHHHHHHH
Q 042918 255 -SSQGKKLTTRWIKCS 269 (285)
Q Consensus 255 -~~~~~~l~~ai~~~~ 269 (285)
.+++++|+++|++++
T Consensus 408 ~~~~~~~l~~ai~~ll 423 (463)
T 2acv_A 408 DVVAAEEIEKGLKDLM 423 (463)
T ss_dssp CCCCHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHH
Confidence 599999999999954
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.94 E-value=2.5e-26 Score=212.67 Aligned_cols=242 Identities=13% Similarity=0.040 Sum_probs=154.0
Q ss_pred CCccEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHh---hhhhHHH----------hhcc-CCc----cc-----
Q 042918 18 EKISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLL---NQLMKFI----------SLFI-SGT----AI----- 74 (285)
Q Consensus 18 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~---~~~p~~~----------~~~~-~~~----~~----- 74 (285)
.+|||||+|.++.|+..+|+++|||++.+++.++....... .+.+.+. ..+. ..+ +.
T Consensus 108 ~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (424)
T 2iya_A 108 DRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPAGTGDAEEGAEAEDGLVRFF 187 (424)
T ss_dssp SCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCCC---------------------HHHHHHHH
T ss_pred cCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccccccccccccccccccccccchhhhccchhHHHHH
Confidence 36999999998899999999999999999876642111100 0000000 0000 000 00
Q ss_pred -cccccccCCCCc-ccccc-cCcceEEEcccccCChhhhhcCCCcccccccccccCCCCCCCCCCC----CCCceeeeee
Q 042918 75 -KKHMIQLAPTMA-TIHST-KLGEWMLCKSKYDLEPGALALIPELLPLGQLLASNRLGNSAGFFWP----EDSTLFSTES 147 (285)
Q Consensus 75 -~~~~~~~~pg~~-~~~~~-~~~~~vlvns~~~le~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~----~~~~~~s~~~ 147 (285)
.......-.|++ ....+ ...+.+|+|++++++++..+..+++++|||+....... ..+.. ....++++++
T Consensus 188 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~vGp~~~~~~~~---~~~~~~~~~~~~v~v~~Gs 264 (424)
T 2iya_A 188 TRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTFVGPTYGDRSHQ---GTWEGPGDGRPVLLIALGS 264 (424)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTGGGCCTTEEECCCCCCCCGGG---CCCCCCCSSCCEEEEECCS
T ss_pred HHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCccCCCCCEEEeCCCCCCcccC---CCCCccCCCCCEEEEEcCC
Confidence 000000001222 11111 25678999999999986455667899999986432100 01111 1224455444
Q ss_pred cCc---------------cc-eEEEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchh
Q 042918 148 YSR---------------NR-FNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNP 211 (285)
Q Consensus 148 ~~~---------------~q-~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS 211 (285)
... .. ..+|.+..... .. .+ +..++++.+.+|+||.++|+|.++ |||||||||
T Consensus 265 ~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~---~~-~~-----~~~~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t 333 (424)
T 2iya_A 265 AFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVD---PA-DL-----GEVPPNVEVHQWVPQLDILTKASA--FITHAGMGS 333 (424)
T ss_dssp SSCCCHHHHHHHHHHHTTCSSEEEEECCTTSC---GG-GG-----CSCCTTEEEESSCCHHHHHTTCSE--EEECCCHHH
T ss_pred CCcchHHHHHHHHHHHhcCCcEEEEEECCcCC---hH-Hh-----ccCCCCeEEecCCCHHHHHhhCCE--EEECCchhH
Confidence 321 11 12566654311 11 11 112345688899999999999886 999999999
Q ss_pred HHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhcc
Q 042918 212 TTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKHV 277 (285)
Q Consensus 212 ~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~~ 277 (285)
++||+++|||+|++|.+.||+.||+++++ +|+|+.+..++ ++.++|.++|++++.++.+++.
T Consensus 334 ~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~ 395 (424)
T 2iya_A 334 TMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGRHIPRDQ---VTAEKLREAVLAVASDPGVAER 395 (424)
T ss_dssp HHHHHHTTCCEEECCCSHHHHHHHHHHHH-TTSEEECCGGG---CCHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHcCCCEEEecCccchHHHHHHHHH-CCCEEEcCcCC---CCHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999987 79999998654 8999999999997666655543
No 7
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.93 E-value=1.5e-26 Score=213.95 Aligned_cols=249 Identities=13% Similarity=0.079 Sum_probs=153.4
Q ss_pred HHHHHHhhhcCCCCccEEEeCC-cchh--HHHHHHHcCCceEEEecchHHHHHHH---------------hhhhhH-HHh
Q 042918 6 EELIEEINRQEDEKISCVIADG-AMGW--AMVAAEEMKIRRAAYLACSSWTTGLL---------------LNQLMK-FIS 66 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~-~~~~--~~~~A~~lgiP~i~~~~~~~~~~~~~---------------~~~~p~-~~~ 66 (285)
.++++++.... .+|||||+|. +..| +..+|+++|||++.++++++.....+ .+.... +..
T Consensus 81 ~~~~~~l~~~~-~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~~ 159 (415)
T 1iir_A 81 ATQFDEIPAAA-EGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQWERNN 159 (415)
T ss_dssp HHHHHHHHHHT-TTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCCSSSCCCC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCCcccCCccCCccccchHHHHHHHHHHHH
Confidence 34455544211 4799999997 6778 99999999999999987663211000 000000 000
Q ss_pred hcc-CCccccccccc--c-CCCCcccccc-cCcceEEEcccccCCh-hhhhcCCCcccccccccccC--CCCCCCCCCC-
Q 042918 67 LFI-SGTAIKKHMIQ--L-APTMATIHST-KLGEWMLCKSKYDLEP-GALALIPELLPLGQLLASNR--LGNSAGFFWP- 137 (285)
Q Consensus 67 ~~~-~~~~~~~~~~~--~-~pg~~~~~~~-~~~~~vlvns~~~le~-~~~~~~~~v~~VGpl~~~~~--~~~~~~~~~~- 137 (285)
... ..+....+.+. + .+..+.+... .+. .+++|++++||+ + .+.. ++++|||++.... .+.+...+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~-~~~~-~~~~vG~~~~~~~~~~~~~~~~~l~~ 236 (415)
T 1iir_A 160 QSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTD-HPWVAADPVLAPLQ-PTDL-DAVQTGAWILPDERPLSPELAAFLDA 236 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCS-SCEECSCTTTSCCC-CCSS-CCEECCCCCCCCCCCCCHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHcCCCCCCccccccCCC-CEEEeeChhhcCCC-cccC-CeEeeCCCccCcccCCCHHHHHHHhh
Confidence 000 00000000000 0 1111112222 234 799999999997 4 3333 8999999987532 1111111111
Q ss_pred -CCCceeeeeecC-cc--------------ceEEEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccc
Q 042918 138 -EDSTLFSTESYS-RN--------------RFNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIA 201 (285)
Q Consensus 138 -~~~~~~s~~~~~-~~--------------q~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~ 201 (285)
+...+++++++. .. +..+|+.+..... .. .+ ++++.+.+|+||.++| +++.
T Consensus 237 ~~~~v~v~~Gs~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~--~~-~~--------~~~v~~~~~~~~~~~l--~~~d 303 (415)
T 1iir_A 237 GPPPVYLGFGSLGAPADAVRVAIDAIRAHGRRVILSRGWADLV--LP-DD--------GADCFAIGEVNHQVLF--GRVA 303 (415)
T ss_dssp SSCCEEEECC---CCHHHHHHHHHHHHHTTCCEEECTTCTTCC--CS-SC--------GGGEEECSSCCHHHHG--GGSS
T ss_pred CCCeEEEeCCCCCCcHHHHHHHHHHHHHCCCeEEEEeCCCccc--cc-CC--------CCCEEEeCcCChHHHH--hhCC
Confidence 233566655552 21 1227776654210 11 22 3345788999999999 6777
Q ss_pred eEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhc
Q 042918 202 CFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKH 276 (285)
Q Consensus 202 ~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~ 276 (285)
+||||||+||++||+++|||+|++|+++||+.||+++++ +|+|+.++.++ ++.++|.++|++. .++.+++
T Consensus 304 ~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~~~~~~---~~~~~l~~~i~~l-~~~~~~~ 373 (415)
T 1iir_A 304 AVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAE-LGVGVAHDGPI---PTFDSLSAALATA-LTPETHA 373 (415)
T ss_dssp EEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH-HTSEEECSSSS---CCHHHHHHHHHHH-TSHHHHH
T ss_pred EEEeCCChhHHHHHHHcCCCEEECCCCCccHHHHHHHHH-CCCcccCCcCC---CCHHHHHHHHHHH-cCHHHHH
Confidence 799999999999999999999999999999999999977 79999998654 8999999999986 5555544
No 8
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.92 E-value=1.2e-25 Score=207.76 Aligned_cols=249 Identities=12% Similarity=0.046 Sum_probs=155.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCC-cchh--HHHHHHHcCCceEEEecchHHHHHHHhhhhh---------H-----H----
Q 042918 6 EELIEEINRQEDEKISCVIADG-AMGW--AMVAAEEMKIRRAAYLACSSWTTGLLLNQLM---------K-----F---- 64 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~-~~~~--~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p---------~-----~---- 64 (285)
.++++.+.... .+||+||+|. +..| +..+|+.+|||++.++++++.... . ++| . +
T Consensus 82 ~~~~~~l~~~~-~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~-~~p~~~~~~~~~~r~~n~~~~~~ 157 (416)
T 1rrv_A 82 EMQFDAVPGAA-EGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS--P-HLPPAYDEPTTPGVTDIRVLWEE 157 (416)
T ss_dssp HHHHHHHHHHT-TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC--S-SSCCCBCSCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--c-ccCCCCCCCCCchHHHHHHHHHH
Confidence 44555554211 4799999996 4567 899999999999998876522110 0 110 0 0
Q ss_pred Hhhcc-CCccccccccc--c-CCCCccccc-ccCcceEEEcccccCChhhhhcCCCcccccccccccC--CCCCCCCCCC
Q 042918 65 ISLFI-SGTAIKKHMIQ--L-APTMATIHS-TKLGEWMLCKSKYDLEPGALALIPELLPLGQLLASNR--LGNSAGFFWP 137 (285)
Q Consensus 65 ~~~~~-~~~~~~~~~~~--~-~pg~~~~~~-~~~~~~vlvns~~~le~~~~~~~~~v~~VGpl~~~~~--~~~~~~~~~~ 137 (285)
..... ..+....+.+. + .+..+.... ..+. .+++|++++|+++ .+.. ++++|||++.... .+.+...+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~-~~~~-~~~~vG~~~~~~~~~~~~~~~~~l~ 234 (416)
T 1rrv_A 158 RAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGE-RPLLAADPVLAPL-QPDV-DAVQTGAWLLSDERPLPPELEAFLA 234 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCS-SCEECSCTTTSCC-CSSC-CCEECCCCCCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCC-CeEEccCccccCC-CCCC-CeeeECCCccCccCCCCHHHHHHHh
Confidence 00000 00000000000 0 111111222 2344 8999999999975 3333 8999999987532 1111111111
Q ss_pred --CCCceeeeeecCc-----------------cceEEEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccC
Q 042918 138 --EDSTLFSTESYSR-----------------NRFNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHP 198 (285)
Q Consensus 138 --~~~~~~s~~~~~~-----------------~q~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~ 198 (285)
....+++++++.. ....+|+.+..... .. .+| ++..+++|+||.++| +
T Consensus 235 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~--~~-~~~--------~~v~~~~~~~~~~ll--~ 301 (416)
T 1rrv_A 235 AGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTELV--LP-DDR--------DDCFAIDEVNFQALF--R 301 (416)
T ss_dssp SSSCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTCC--CS-CCC--------TTEEEESSCCHHHHG--G
T ss_pred cCCCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCcccc--cc-CCC--------CCEEEeccCChHHHh--c
Confidence 1234555444421 11237887754211 11 233 345788999999999 6
Q ss_pred ccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhccC
Q 042918 199 SIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKHVP 278 (285)
Q Consensus 199 ~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~~~ 278 (285)
++.+||||||+||++||+++|||+|++|+++||+.||+++++ +|+|+.+..++ ++.++|.++|++. .++.+++.+
T Consensus 302 ~~d~~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~~~~~~---~~~~~l~~~i~~l-~~~~~~~~~ 376 (416)
T 1rrv_A 302 RVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAA-LGIGVAHDGPT---PTFESLSAALTTV-LAPETRARA 376 (416)
T ss_dssp GSSEEEECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHH-HTSEEECSSSC---CCHHHHHHHHHHH-TSHHHHHHH
T ss_pred cCCEEEecCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHH-CCCccCCCCCC---CCHHHHHHHHHHh-hCHHHHHHH
Confidence 677799999999999999999999999999999999999987 79999998654 8899999999987 555555544
Q ss_pred c
Q 042918 279 W 279 (285)
Q Consensus 279 ~ 279 (285)
+
T Consensus 377 ~ 377 (416)
T 1rrv_A 377 E 377 (416)
T ss_dssp H
T ss_pred H
Confidence 3
No 9
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.92 E-value=1.1e-24 Score=199.51 Aligned_cols=96 Identities=10% Similarity=0.032 Sum_probs=75.2
Q ss_pred EEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhh
Q 042918 155 LWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLN 234 (285)
Q Consensus 155 lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~n 234 (285)
+|...+.... ... .+|+| +++.+|+||.++|+|.++ |||||||||++||+++|||+|++|+++||+.|
T Consensus 272 v~~~~~~~~~-~~~-~~~~~--------v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~n 339 (400)
T 4amg_A 272 VLTLGGGDLA-LLG-ELPAN--------VRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTN 339 (400)
T ss_dssp EEECCTTCCC-CCC-CCCTT--------EEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC---CHHH
T ss_pred EEEecCcccc-ccc-cCCCC--------EEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCcccHHHH
Confidence 7777654211 112 45555 488899999999998765 99999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEeecCCCCCccHHHHHHHHH
Q 042918 235 ESYICAIRKVGQRFNKTKMGSSQGKKLTTRWI 266 (285)
Q Consensus 235 a~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~ 266 (285)
|+++++ .|+|+.++..+ ++++.|++.+.
T Consensus 340 a~~v~~-~G~g~~l~~~~---~~~~al~~lL~ 367 (400)
T 4amg_A 340 RDVLTG-LGIGFDAEAGS---LGAEQCRRLLD 367 (400)
T ss_dssp HHHHHH-HTSEEECCTTT---CSHHHHHHHHH
T ss_pred HHHHHH-CCCEEEcCCCC---chHHHHHHHHc
Confidence 999988 79999998764 77776665554
No 10
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.87 E-value=1.1e-21 Score=181.49 Aligned_cols=243 Identities=12% Similarity=0.023 Sum_probs=145.7
Q ss_pred CCccEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHh-hhhh---HHHh-hccCCccccc-cccccCCCCc-cccc
Q 042918 18 EKISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLL-NQLM---KFIS-LFISGTAIKK-HMIQLAPTMA-TIHS 90 (285)
Q Consensus 18 ~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~-~~~p---~~~~-~~~~~~~~~~-~~~~~~pg~~-~~~~ 90 (285)
.+||+||+|.+..|+..+|+.+|||++.+++....+..+.. ...+ .... .+...+.... ..... .|++ ....
T Consensus 103 ~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~ 181 (430)
T 2iyf_A 103 DIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAWLKE-NGITEHPDT 181 (430)
T ss_dssp SCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHSHHHHHHHHHHHHHHHH-TTCCSCHHH
T ss_pred cCCCEEEECCccHHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccchHHHHHHHHHHHHHHH-hCCCCCHHH
Confidence 37999999988789999999999999998865431100000 0000 0000 0000000000 00000 1222 1111
Q ss_pred c-cCcceEEEcccccCChhhhhcCCC-cccccccccccCCCCCCCCCCCCC-CceeeeeecC---------------c-c
Q 042918 91 T-KLGEWMLCKSKYDLEPGALALIPE-LLPLGQLLASNRLGNSAGFFWPED-STLFSTESYS---------------R-N 151 (285)
Q Consensus 91 ~-~~~~~vlvns~~~le~~~~~~~~~-v~~VGpl~~~~~~~~~~~~~~~~~-~~~~s~~~~~---------------~-~ 151 (285)
. ..++.+++|+.+++++...+..++ +++|||.........+......++ ..+++++++. . +
T Consensus 182 ~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~vG~~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~ 261 (430)
T 2iyf_A 182 FASHPPRSLVLIPKALQPHADRVDEDVYTFVGACQGDRAEEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLP 261 (430)
T ss_dssp HHHCCSSEEECSCGGGSTTGGGSCTTTEEECCCCC-----CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCT
T ss_pred HhcCCCcEEEeCcHHhCCCcccCCCccEEEeCCcCCCCCCCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCC
Confidence 1 246789999999999753344557 999998654321000000000011 1233322222 1 1
Q ss_pred ceE-EEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEecccccc
Q 042918 152 RFN-LWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAE 230 (285)
Q Consensus 152 q~~-lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~D 230 (285)
... +|.+..... .. .+ +...+++.+.+|+||.++|+|.++ ||+|||+|+++||+++|+|+|++|..+|
T Consensus 262 ~~~~~~~~G~~~~---~~-~l-----~~~~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~ 330 (430)
T 2iyf_A 262 GWHLVLQIGRKVT---PA-EL-----GELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVD 330 (430)
T ss_dssp TEEEEEECC---C---GG-GG-----CSCCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHH
T ss_pred CeEEEEEeCCCCC---hH-Hh-----ccCCCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccc
Confidence 222 576654311 11 11 122345678899999999999886 9999999999999999999999999999
Q ss_pred chhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhc
Q 042918 231 QFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKH 276 (285)
Q Consensus 231 Q~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~ 276 (285)
|+.|++++++ .|+|+.+..++ ++.++|.++|++.+.++.+++
T Consensus 331 q~~~a~~~~~-~g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~ 372 (430)
T 2iyf_A 331 QFGNADMLQG-LGVARKLATEE---ATADLLRETALALVDDPEVAR 372 (430)
T ss_dssp HHHHHHHHHH-TTSEEECCCC----CCHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHH-cCCEEEcCCCC---CCHHHHHHHHHHHHcCHHHHH
Confidence 9999999987 79999988654 789999999998765555443
No 11
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.86 E-value=1.1e-21 Score=180.73 Aligned_cols=241 Identities=12% Similarity=0.019 Sum_probs=146.1
Q ss_pred CccEEEeCCcchhH---HHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhhcc-CCccccccccccCCCCcccccc---
Q 042918 19 KISCVIADGAMGWA---MVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISLFI-SGTAIKKHMIQLAPTMATIHST--- 91 (285)
Q Consensus 19 ~~d~vI~D~~~~~~---~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~pg~~~~~~~--- 91 (285)
++|+||+|..++++ ..+|+++|||++.+..+.................... ..+....+....--|+++...+
T Consensus 92 ~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~ 171 (404)
T 3h4t_A 92 GCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDY 171 (404)
T ss_dssp TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHH
T ss_pred CCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcchhhc
Confidence 59999999665544 7889999999998776543110000000000000000 0000000000000123222111
Q ss_pred cCcceEEEcccccCChhhhhcCCCcccccccccccC--CCCCCCCCCC--CCCceeeeeecC-c--------------cc
Q 042918 92 KLGEWMLCKSKYDLEPGALALIPELLPLGQLLASNR--LGNSAGFFWP--EDSTLFSTESYS-R--------------NR 152 (285)
Q Consensus 92 ~~~~~vlvns~~~le~~~~~~~~~v~~VGpl~~~~~--~~~~~~~~~~--~~~~~~s~~~~~-~--------------~q 152 (285)
...+..++++.+.+.+. .+..++++++|+++.+.. ++.++..++. ...++++++++. . +.
T Consensus 172 ~~~~~~l~~~~~~l~p~-~~~~~~~~~~G~~~~~~~~~~~~~l~~~l~~~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~~~ 250 (404)
T 3h4t_A 172 GYTDQPWLAADPVLSPL-RPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSPPVYVGFGSGPAPAEAARVAIEAVRAQGR 250 (404)
T ss_dssp HHCSSCEECSCTTTSCC-CTTCCSCCBCCCCCCCCCCCCCHHHHHHHHTSSCCEEECCTTSCCCTTHHHHHHHHHHHTTC
T ss_pred cccCCeEEeeCcceeCC-CCCCCCeEEeCccccCCCCCCCHHHHHHHhcCCCeEEEECCCCCCcHHHHHHHHHHHHhCCC
Confidence 12344577888888764 455668999998876431 1111111111 223455544443 1 12
Q ss_pred eEEEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccch
Q 042918 153 FNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQF 232 (285)
Q Consensus 153 ~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~ 232 (285)
..+|+.+.... ... .+ .+|..+.+|+||.++|.+ ..+||||||+||+.||+++|||+|++|+++||+
T Consensus 251 ~vv~~~g~~~~--~~~-~~--------~~~v~~~~~~~~~~ll~~--~d~~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~ 317 (404)
T 3h4t_A 251 RVVLSSGWAGL--GRI-DE--------GDDCLVVGEVNHQVLFGR--VAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQP 317 (404)
T ss_dssp CEEEECTTTTC--CCS-SC--------CTTEEEESSCCHHHHGGG--SSEEEECCCHHHHHHHHHHTCCEEECCCSTTHH
T ss_pred EEEEEeCCccc--ccc-cC--------CCCEEEecCCCHHHHHhh--CcEEEECCcHHHHHHHHHcCCCEEEcCCcccHH
Confidence 23887765411 011 12 345688899999999965 556999999999999999999999999999999
Q ss_pred hhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhccC
Q 042918 233 LNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKHVP 278 (285)
Q Consensus 233 ~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~~~ 278 (285)
.||+++++ .|+|+.+..++ ++.++|.++|++++. +.+++.+
T Consensus 318 ~na~~~~~-~G~g~~l~~~~---~~~~~l~~ai~~ll~-~~~~~~~ 358 (404)
T 3h4t_A 318 YYAGRVAD-LGVGVAHDGPT---PTVESLSAALATALT-PGIRARA 358 (404)
T ss_dssp HHHHHHHH-HTSEEECSSSS---CCHHHHHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHH-CCCEeccCcCC---CCHHHHHHHHHHHhC-HHHHHHH
Confidence 99999988 79999998654 799999999998765 5555443
No 12
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.85 E-value=1.1e-20 Score=173.87 Aligned_cols=243 Identities=10% Similarity=-0.020 Sum_probs=147.9
Q ss_pred CCccEEEeC-CcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhhccCCcc-------ccccccccCCCCccc-
Q 042918 18 EKISCVIAD-GAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISLFISGTA-------IKKHMIQLAPTMATI- 88 (285)
Q Consensus 18 ~~~d~vI~D-~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------~~~~~~~~~pg~~~~- 88 (285)
.+||+||+| .+..++..+|+++|||++.+.+...... .+. ..+..........+ .+......--|++..
T Consensus 117 ~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~ 194 (415)
T 3rsc_A 117 DVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNE-HYS-FSQDMVTLAGTIDPLDLPVFRDTLRDLLAEHGLSRSV 194 (415)
T ss_dssp SCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCS-SCC-HHHHHHHHHTCCCGGGCHHHHHHHHHHHHHTTCCCCH
T ss_pred cCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccC-ccc-cccccccccccCChhhHHHHHHHHHHHHHHcCCCCCh
Confidence 379999999 7778999999999999998875432110 000 00000000000000 000000000122211
Q ss_pred -ccccC-cceEEEcccccCChhhhhcCCCcccccccccccCCCCCCCCCCC-CCCceeeeeecCc---------------
Q 042918 89 -HSTKL-GEWMLCKSKYDLEPGALALIPELLPLGQLLASNRLGNSAGFFWP-EDSTLFSTESYSR--------------- 150 (285)
Q Consensus 89 -~~~~~-~~~vlvns~~~le~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~-~~~~~~s~~~~~~--------------- 150 (285)
..... .+..++.+.+.++........++.++||+........+...... ...+++++++...
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~ 274 (415)
T 3rsc_A 195 VDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPCFDDRRFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDG 274 (415)
T ss_dssp HHHHTCCCSEEEESSCTTTSTTGGGCCTTEEECCCCCCCCGGGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTT
T ss_pred hhhhcCCCCeEEEEcCcccCCCcccCCCceEEeCCCCCCcccCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhc
Confidence 11122 26788888888887533445679999998754211100000001 1223444333221
Q ss_pred -cceEEEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccc
Q 042918 151 -NRFNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFA 229 (285)
Q Consensus 151 -~q~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~ 229 (285)
+...+|.+.+.... . .+ +...+|..+.+|+||.++|++.++ ||||||+|+++||+++|+|+|++|...
T Consensus 275 ~~~~~v~~~g~~~~~---~-~l-----~~~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~ 343 (415)
T 3rsc_A 275 QPWHVVMTLGGQVDP---A-AL-----GDLPPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSF 343 (415)
T ss_dssp SSCEEEEECTTTSCG---G-GG-----CCCCTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSG
T ss_pred CCcEEEEEeCCCCCh---H-Hh-----cCCCCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcc
Confidence 11226666543111 1 11 112345678899999999999776 999999999999999999999999999
Q ss_pred cchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhcc
Q 042918 230 EQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKHV 277 (285)
Q Consensus 230 DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~~ 277 (285)
||+.||+++++ .|+|+.+..++ ++.++|.++|++++.++.+++.
T Consensus 344 ~q~~~a~~l~~-~g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~ 387 (415)
T 3rsc_A 344 DVQPMARRVDQ-LGLGAVLPGEK---ADGDTLLAAVGAVAADPALLAR 387 (415)
T ss_dssp GGHHHHHHHHH-HTCEEECCGGG---CCHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHH-cCCEEEcccCC---CCHHHHHHHHHHHHcCHHHHHH
Confidence 99999999988 69999998754 8899999999987665555443
No 13
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.84 E-value=6.5e-21 Score=173.79 Aligned_cols=222 Identities=9% Similarity=0.001 Sum_probs=138.3
Q ss_pred CccEEEeCCcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhhccCCccccccccccCCCCcccccccCcceEE
Q 042918 19 KISCVIADGAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISLFISGTAIKKHMIQLAPTMATIHSTKLGEWML 98 (285)
Q Consensus 19 ~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~vl 98 (285)
+||+||+|.+..++..+|+.+|||++.++...... . .......... ...... -|++.. ..++.++
T Consensus 107 ~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~----~-~~~~~~~~~~------~~~~~~-~g~~~~---~~~~~~l 171 (384)
T 2p6p_A 107 RPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDA----D-GIHPGADAEL------RPELSE-LGLERL---PAPDLFI 171 (384)
T ss_dssp CCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCC----T-TTHHHHHHHT------HHHHHH-TTCSSC---CCCSEEE
T ss_pred CCcEEEECcchhhHHHHHHhcCCCEEEeccCCccc----c-hhhHHHHHHH------HHHHHH-cCCCCC---CCCCeEE
Confidence 69999999888899999999999999876432100 0 0000000000 000000 012111 1267899
Q ss_pred EcccccCChhhhhcC-CCcccccccccccCCCCCCCCCC---CC-CCceeeeeecCcc---------------------c
Q 042918 99 CKSKYDLEPGALALI-PELLPLGQLLASNRLGNSAGFFW---PE-DSTLFSTESYSRN---------------------R 152 (285)
Q Consensus 99 vns~~~le~~~~~~~-~~v~~VGpl~~~~~~~~~~~~~~---~~-~~~~~s~~~~~~~---------------------q 152 (285)
+|+.+.++++ .+.. .++.+++. ... .+...++ .+ ...+++++++... .
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~ 245 (384)
T 2p6p_A 172 DICPPSLRPA-NAAPARMMRHVAT-SRQ----CPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDV 245 (384)
T ss_dssp ECSCGGGSCT-TSCCCEECCCCCC-CCC----CBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTC
T ss_pred EECCHHHCCC-CCCCCCceEecCC-CCC----CCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCc
Confidence 9999988874 3332 24555531 111 1111111 11 1234444443321 1
Q ss_pred eEEEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccch
Q 042918 153 FNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQF 232 (285)
Q Consensus 153 ~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~ 232 (285)
..+|+.+.+ ... .+ +..++++.+ +|+||.++|++ +.+||||||+||++||+++|+|+|++|.++||+
T Consensus 246 ~~~~~~g~~----~~~-~l-----~~~~~~v~~-~~~~~~~~l~~--~d~~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq~ 312 (384)
T 2p6p_A 246 ELIVAAPDT----VAE-AL-----RAEVPQARV-GWTPLDVVAPT--CDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLE 312 (384)
T ss_dssp EEEEECCHH----HHH-HH-----HHHCTTSEE-ECCCHHHHGGG--CSEEEECSCTTHHHHHHHTTCCEEECCCSHHHH
T ss_pred EEEEEeCCC----CHH-hh-----CCCCCceEE-cCCCHHHHHhh--CCEEEeCCcHHHHHHHHHhCCCEEEccCcccch
Confidence 126766532 001 11 112345688 99999999965 556999999999999999999999999999999
Q ss_pred hhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhccC
Q 042918 233 LNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKHVP 278 (285)
Q Consensus 233 ~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~~~ 278 (285)
.||+++++ .|+|+.+..++ ++.++|.++|++.+.++.+++.+
T Consensus 313 ~~a~~~~~-~g~g~~~~~~~---~~~~~l~~~i~~ll~~~~~~~~~ 354 (384)
T 2p6p_A 313 APARRVAD-YGAAIALLPGE---DSTEAIADSCQELQAKDTYARRA 354 (384)
T ss_dssp HHHHHHHH-HTSEEECCTTC---CCHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHH-CCCeEecCcCC---CCHHHHHHHHHHHHcCHHHHHHH
Confidence 99999987 79999988653 78999999999876666655433
No 14
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.84 E-value=4.1e-20 Score=168.76 Aligned_cols=243 Identities=9% Similarity=-0.047 Sum_probs=146.8
Q ss_pred CCccEEEeC-CcchhHHHHHHHcCCceEEEecchHHHHHHHhhhhhHHHhhccCCcc-------ccccccccCCCCccc-
Q 042918 18 EKISCVIAD-GAMGWAMVAAEEMKIRRAAYLACSSWTTGLLLNQLMKFISLFISGTA-------IKKHMIQLAPTMATI- 88 (285)
Q Consensus 18 ~~~d~vI~D-~~~~~~~~~A~~lgiP~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------~~~~~~~~~pg~~~~- 88 (285)
.+||+||+| .+..++..+|+++|||++.+.+....+. .+. ..+.+........+ ........--|++..
T Consensus 101 ~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 178 (402)
T 3ia7_A 101 NPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANE-HYS-LFKELWKSNGQRHPADVEAVHSVLVDLLGKYGVDTPV 178 (402)
T ss_dssp CCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBT-TBC-HHHHHHHHHTCCCGGGSHHHHHHHHHHHHTTTCCSCH
T ss_pred cCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCc-ccc-ccccccccccccChhhHHHHHHHHHHHHHHcCCCCCh
Confidence 479999999 7788999999999999998874432110 000 00000000000000 000000001122211
Q ss_pred cc-ccCc-ceEEEcccccCChhhhhcCCCcccccccccccCCCCCCCCCCC-CCCceeeeeecCcc--------------
Q 042918 89 HS-TKLG-EWMLCKSKYDLEPGALALIPELLPLGQLLASNRLGNSAGFFWP-EDSTLFSTESYSRN-------------- 151 (285)
Q Consensus 89 ~~-~~~~-~~vlvns~~~le~~~~~~~~~v~~VGpl~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~-------------- 151 (285)
.. .... +..++.+..+++........++.+|||+........+...... ...+++++++....
T Consensus 179 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~ 258 (402)
T 3ia7_A 179 KEYWDEIEGLTIVFLPKSFQPFAETFDERFAFVGPTLTGRDGQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFAD 258 (402)
T ss_dssp HHHHTCCCSCEEESSCGGGSTTGGGCCTTEEECCCCCCC----CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTT
T ss_pred hhhhcCCCCeEEEEcChHhCCccccCCCCeEEeCCCCCCcccCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhc
Confidence 11 1222 6677888888887533345679999998754211100000001 12234443333221
Q ss_pred --ceEEEEEcCCCCCCCCccccccCccccccccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccc-c
Q 042918 152 --RFNLWAVRPDMTDNSNDDAYQKGFQDGVGTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPY-F 228 (285)
Q Consensus 152 --q~~lW~~~~~~~~~~~~~~lp~~f~~~~~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~-~ 228 (285)
...+|...+.... . .+ ++..+|..+.+|+||.++|+|.++ ||||||+|+++||+++|+|+|++|. .
T Consensus 259 ~~~~~~~~~g~~~~~---~-~~-----~~~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~ 327 (402)
T 3ia7_A 259 TPWHVVMAIGGFLDP---A-VL-----GPLPPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFA 327 (402)
T ss_dssp SSCEEEEECCTTSCG---G-GG-----CSCCTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGC
T ss_pred CCcEEEEEeCCcCCh---h-hh-----CCCCCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCc
Confidence 1125555543110 1 11 122345688899999999999776 9999999999999999999999999 9
Q ss_pred ccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHHHHhhcc
Q 042918 229 AEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVMKILKHV 277 (285)
Q Consensus 229 ~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~~~~~~~ 277 (285)
.||+.|++++++ .|+|+.+..++ ++.++|.+++++.+.++.+++.
T Consensus 328 ~~q~~~a~~~~~-~g~g~~~~~~~---~~~~~l~~~~~~ll~~~~~~~~ 372 (402)
T 3ia7_A 328 TEAAPSAERVIE-LGLGSVLRPDQ---LEPASIREAVERLAADSAVRER 372 (402)
T ss_dssp GGGHHHHHHHHH-TTSEEECCGGG---CSHHHHHHHHHHHHHCHHHHHH
T ss_pred ccHHHHHHHHHH-cCCEEEccCCC---CCHHHHHHHHHHHHcCHHHHHH
Confidence 999999999988 69999998754 7899999999987766655443
No 15
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.83 E-value=2.9e-20 Score=173.01 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=79.7
Q ss_pred ccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHH
Q 042918 181 TRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKK 260 (285)
Q Consensus 181 ~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~ 260 (285)
+++.+.+|+||.++|+ +..+||||||+||++||+++|||+|++|++.||+.||+++++ .|+|+.+..++ ++.++
T Consensus 319 ~~v~~~~~~~~~~ll~--~ad~~V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~-~g~g~~~~~~~---~~~~~ 392 (441)
T 2yjn_A 319 DNVRTVGFVPMHALLP--TCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQE-FGAGIALPVPE---LTPDQ 392 (441)
T ss_dssp SSEEECCSCCHHHHGG--GCSEEEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH-HTSEEECCTTT---CCHHH
T ss_pred CCEEEecCCCHHHHHh--hCCEEEECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHH-cCCEEEccccc---CCHHH
Confidence 4567889999999994 556699999999999999999999999999999999999988 79999998654 88999
Q ss_pred HHHHHHHHHHHHHhhccC
Q 042918 261 LTTRWIKCSVMKILKHVP 278 (285)
Q Consensus 261 l~~ai~~~~~~~~~~~~~ 278 (285)
|.++|++.+.++.+++.+
T Consensus 393 l~~~i~~ll~~~~~~~~~ 410 (441)
T 2yjn_A 393 LRESVKRVLDDPAHRAGA 410 (441)
T ss_dssp HHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHH
Confidence 999999876666655433
No 16
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.77 E-value=6.2e-19 Score=161.52 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=75.0
Q ss_pred ccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHH
Q 042918 181 TRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKK 260 (285)
Q Consensus 181 ~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~ 260 (285)
+|..+.+|+||.++|+|.++ ||||||.||++||+++|+|+|++|.+.||+.|+.++++ .|+|+.+..++ ++.++
T Consensus 284 ~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~-~g~g~~~~~~~---~~~~~ 357 (398)
T 4fzr_A 284 EGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHA-AGAGVEVPWEQ---AGVES 357 (398)
T ss_dssp TTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHH-TTSEEECC----------C
T ss_pred CcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHH-cCCEEecCccc---CCHHH
Confidence 45588899999999999665 99999999999999999999999999999999999988 69999998754 78899
Q ss_pred HHHHHHHHHHHHHhhccC
Q 042918 261 LTTRWIKCSVMKILKHVP 278 (285)
Q Consensus 261 l~~ai~~~~~~~~~~~~~ 278 (285)
|.++|++.+.++.+++.+
T Consensus 358 l~~ai~~ll~~~~~~~~~ 375 (398)
T 4fzr_A 358 VLAACARIRDDSSYVGNA 375 (398)
T ss_dssp HHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHH
Confidence 999998876665555443
No 17
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=141.83 Aligned_cols=93 Identities=23% Similarity=0.284 Sum_probs=83.4
Q ss_pred cceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHH
Q 042918 182 RGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKL 261 (285)
Q Consensus 182 ~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l 261 (285)
++.+.+|+||.++|.|++..+||||||+||++||+++|+|+|++|.+.||+.||+++++ .|+|+.+..++ ++.++|
T Consensus 69 ~v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~-~g~g~~~~~~~---~~~~~l 144 (170)
T 2o6l_A 69 NTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKA-RGAAVRVDFNT---MSSTDL 144 (170)
T ss_dssp TEEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHT-TTSEEECCTTT---CCHHHH
T ss_pred cEEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHH-cCCeEEecccc---CCHHHH
Confidence 45788999999999999999999999999999999999999999999999999999987 79999998654 889999
Q ss_pred HHHHHHHHHHHHhhccC
Q 042918 262 TTRWIKCSVMKILKHVP 278 (285)
Q Consensus 262 ~~ai~~~~~~~~~~~~~ 278 (285)
.++|++.+.++.+++-+
T Consensus 145 ~~~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 145 LNALKRVINDPSYKENV 161 (170)
T ss_dssp HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHH
Confidence 99999976666665544
No 18
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.71 E-value=2.3e-17 Score=151.13 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=69.2
Q ss_pred ccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhH--HHHHHHhcceEEeecCCCCCccH
Q 042918 181 TRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNE--SYICAIRKVGQRFNKTKMGSSQG 258 (285)
Q Consensus 181 ~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na--~~~~~~~gvG~~l~~~~~~~~~~ 258 (285)
+|..+.+|+||.++|+|.++ ||||||+||++||+++|+|+|++|+++||+.|+ .++++ .|+|+.+..++ .+.
T Consensus 283 ~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~-~g~g~~~~~~~---~~~ 356 (398)
T 3oti_A 283 RNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSR-RGIGLVSTSDK---VDA 356 (398)
T ss_dssp TTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHH-HTSEEECCGGG---CCH
T ss_pred CcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHH-CCCEEeeCCCC---CCH
Confidence 45688899999999999665 999999999999999999999999999999999 99987 79999998654 677
Q ss_pred HHHHHHH
Q 042918 259 KKLTTRW 265 (285)
Q Consensus 259 ~~l~~ai 265 (285)
+.+.+.+
T Consensus 357 ~~l~~ll 363 (398)
T 3oti_A 357 DLLRRLI 363 (398)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777333
No 19
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.70 E-value=1.2e-16 Score=145.60 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=77.6
Q ss_pred cccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeec--CCCCCcc
Q 042918 180 GTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNK--TKMGSSQ 257 (285)
Q Consensus 180 ~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~--~~~~~~~ 257 (285)
.++..+.+|+|+.++|++ ..+||||||.||++||+++|+|+|++|.+.||+.|+.++++ .|+|+.+.. ++ .+
T Consensus 269 ~~~v~~~~~~~~~~ll~~--ad~~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~-~g~g~~~~~~~~~---~~ 342 (391)
T 3tsa_A 269 PDNARIAESVPLNLFLRT--CELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAA-AGAGICLPDEQAQ---SD 342 (391)
T ss_dssp CTTEEECCSCCGGGTGGG--CSEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHH-TTSEEECCSHHHH---TC
T ss_pred CCCEEEeccCCHHHHHhh--CCEEEeCCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHH-cCCEEecCccccc---CC
Confidence 345677899999999955 55599999999999999999999999999999999999988 699999986 43 68
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 042918 258 GKKLTTRWIKCSVMKILKH 276 (285)
Q Consensus 258 ~~~l~~ai~~~~~~~~~~~ 276 (285)
.++|.+++.+.+.+..+++
T Consensus 343 ~~~l~~ai~~ll~~~~~~~ 361 (391)
T 3tsa_A 343 HEQFTDSIATVLGDTGFAA 361 (391)
T ss_dssp HHHHHHHHHHHHTCTHHHH
T ss_pred HHHHHHHHHHHHcCHHHHH
Confidence 9999999998665555443
No 20
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.66 E-value=1.1e-15 Score=139.90 Aligned_cols=91 Identities=14% Similarity=0.257 Sum_probs=80.0
Q ss_pred cccceeeeecChhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHH
Q 042918 180 GTRGQMVGCTPQQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGK 259 (285)
Q Consensus 180 ~~~~~v~~w~PQ~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~ 259 (285)
.++..+.+|+|+.++|++.++ ||+|||+|+++||+++|+|+|+.|..+||..|+..+++ .|+|+.+..++ ++.+
T Consensus 291 ~~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~-~g~g~~~~~~~---~~~~ 364 (412)
T 3otg_A 291 PANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQ-AGAGDHLLPDN---ISPD 364 (412)
T ss_dssp CTTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHH-HTSEEECCGGG---CCHH
T ss_pred CCcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCEEecCCchhHHHHHHHHHH-cCCEEecCccc---CCHH
Confidence 345677899999999999776 99999999999999999999999999999999999988 69999998754 7899
Q ss_pred HHHHHHHHHHHHHHhhc
Q 042918 260 KLTTRWIKCSVMKILKH 276 (285)
Q Consensus 260 ~l~~ai~~~~~~~~~~~ 276 (285)
+|.++|.+.+.++.+++
T Consensus 365 ~l~~ai~~ll~~~~~~~ 381 (412)
T 3otg_A 365 SVSGAAKRLLAEESYRA 381 (412)
T ss_dssp HHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhCHHHHH
Confidence 99999998766655544
No 21
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.30 E-value=2.4e-11 Score=110.25 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=76.0
Q ss_pred ccceeeeecChh-hhcccCccceEEecCCchhHHHhHhcCceeEecccc----ccchhhHHHHHHHhcceEEeecCCCCC
Q 042918 181 TRGQMVGCTPQQ-KFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYF----AEQFLNESYICAIRKVGQRFNKTKMGS 255 (285)
Q Consensus 181 ~~~~v~~w~PQ~-~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~----~DQ~~na~~~~~~~gvG~~l~~~~~~~ 255 (285)
.+..+.+|+++. ++|+..++ +|||+|.+|+.|++++|+|+|.+|+- .+|..||+.+++ .|+|+.+..++
T Consensus 235 ~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~-~G~a~~l~~~~--- 308 (365)
T 3s2u_A 235 VEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVR-SGAGRLLPQKS--- 308 (365)
T ss_dssp CCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHT-TTSEEECCTTT---
T ss_pred cccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHH-CCCEEEeecCC---
Confidence 355777999885 68888887 99999999999999999999999873 589999999998 69999998765
Q ss_pred ccHHHHHHHHHHHHHHH-HhhccCccc
Q 042918 256 SQGKKLTTRWIKCSVMK-ILKHVPWNS 281 (285)
Q Consensus 256 ~~~~~l~~ai~~~~~~~-~~~~~~~~~ 281 (285)
++.++|.++|.+.+.++ .+++.+.++
T Consensus 309 ~~~~~L~~~i~~ll~d~~~~~~m~~~a 335 (365)
T 3s2u_A 309 TGAAELAAQLSEVLMHPETLRSMADQA 335 (365)
T ss_dssp CCHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 89999999999865443 234434333
No 22
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=98.85 E-value=8.7e-10 Score=93.07 Aligned_cols=73 Identities=4% Similarity=-0.107 Sum_probs=59.9
Q ss_pred eeeeecChh-hhcc-cCccceEEecCCchhHHHhHhcCceeEecccc----ccchhhHHHHHHHhcceEEeecCCCCCcc
Q 042918 184 QMVGCTPQQ-KFLS-HPSIACFLRHCGWNPTTEGVSNGLAFLCWPYF----AEQFLNESYICAIRKVGQRFNKTKMGSSQ 257 (285)
Q Consensus 184 ~v~~w~PQ~-~iL~-h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~----~DQ~~na~~~~~~~gvG~~l~~~~~~~~~ 257 (285)
.+.+|.++. ++|+ ..++ +|||||.||+.|++++|+|+|.+|.- .+|..||+++++ .|+|+.+ +
T Consensus 117 ~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~-~G~~~~~--------~ 185 (224)
T 2jzc_A 117 IGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVE-LGYVWSC--------A 185 (224)
T ss_dssp EECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHH-HSCCCEE--------C
T ss_pred EEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHH-CCCEEEc--------C
Confidence 344787876 7887 7776 99999999999999999999999984 369999999988 6998765 2
Q ss_pred HHHHHHHHHH
Q 042918 258 GKKLTTRWIK 267 (285)
Q Consensus 258 ~~~l~~ai~~ 267 (285)
.++|.++|++
T Consensus 186 ~~~L~~~i~~ 195 (224)
T 2jzc_A 186 PTETGLIAGL 195 (224)
T ss_dssp SCTTTHHHHH
T ss_pred HHHHHHHHHH
Confidence 4556667766
No 23
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=98.46 E-value=8.2e-08 Score=85.81 Aligned_cols=81 Identities=10% Similarity=0.113 Sum_probs=68.5
Q ss_pred cceeeeecCh-hhhcccCccceEEecCCchhHHHhHhcCceeEecccc---ccchhhHHHHHHHhcceEEeecCCCCCcc
Q 042918 182 RGQMVGCTPQ-QKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYF---AEQFLNESYICAIRKVGQRFNKTKMGSSQ 257 (285)
Q Consensus 182 ~~~v~~w~PQ-~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~---~DQ~~na~~~~~~~gvG~~l~~~~~~~~~ 257 (285)
++.+.+|+++ .++|+..++ ||+++|.++++||+++|+|+|+.|.. .||..|++.+.+ .|.|..+..++ .+
T Consensus 238 ~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~-~g~g~~~~~~d---~~ 311 (364)
T 1f0k_A 238 QHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEK-AGAAKIIEQPQ---LS 311 (364)
T ss_dssp TSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHH-TTSEEECCGGG---CC
T ss_pred ceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHh-CCcEEEecccc---CC
Confidence 4566788854 668887776 99999999999999999999999998 799999999987 59999887643 66
Q ss_pred HHHHHHHHHHH
Q 042918 258 GKKLTTRWIKC 268 (285)
Q Consensus 258 ~~~l~~ai~~~ 268 (285)
.+++.++|.+.
T Consensus 312 ~~~la~~i~~l 322 (364)
T 1f0k_A 312 VDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhc
Confidence 89999999864
No 24
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.96 E-value=7.3e-06 Score=71.46 Aligned_cols=65 Identities=6% Similarity=0.068 Sum_probs=57.3
Q ss_pred cceeeeecChhh-hcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeec
Q 042918 182 RGQMVGCTPQQK-FLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNK 250 (285)
Q Consensus 182 ~~~v~~w~PQ~~-iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~ 250 (285)
+..+..++++.. +++..++ .||+|| +++.|+++.|+|++.+|...+|..||+.+++ .|+++.+..
T Consensus 209 ~v~v~~~~~~m~~~m~~aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~-~G~~~~~~~ 274 (282)
T 3hbm_A 209 NIRLFIDHENIAKLMNESNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAK-KGYEVEYKY 274 (282)
T ss_dssp SEEEEESCSCHHHHHHTEEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHH-TTCEEECGG
T ss_pred CEEEEeCHHHHHHHHHHCCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHH-CCCEEEcch
Confidence 456778888874 7777666 999999 8999999999999999999999999999998 699999875
No 25
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=96.80 E-value=0.0026 Score=56.63 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=61.6
Q ss_pred ccceeeeecCh---hhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCcc
Q 042918 181 TRGQMVGCTPQ---QKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQ 257 (285)
Q Consensus 181 ~~~~v~~w~PQ---~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~ 257 (285)
+++.+.+|+++ .++++..++ ||+.+|.. ++||+++|+|+|+.|..++.. .+.+ .|.|+.+.. +
T Consensus 263 ~~v~~~g~~~~~~~~~~~~~ad~--~v~~Sg~~-~lEA~a~G~PvI~~~~~~~~~----e~v~-~g~g~lv~~------d 328 (384)
T 1vgv_A 263 KNVILIDPQEYLPFVWLMNHAWL--ILTDSGGI-QEEAPSLGKPVLVMRDTTERP----EAVT-AGTVRLVGT------D 328 (384)
T ss_dssp TTEEEECCCCHHHHHHHHHHCSE--EEESSSTG-GGTGGGGTCCEEEESSCCSCH----HHHH-HTSEEEECS------S
T ss_pred CCEEEeCCCCHHHHHHHHHhCcE--EEECCcch-HHHHHHcCCCEEEccCCCCcc----hhhh-CCceEEeCC------C
Confidence 35566566664 456888777 88887654 889999999999998754433 2345 388888863 5
Q ss_pred HHHHHHHHHHHHHHH-HhhccCccccc
Q 042918 258 GKKLTTRWIKCSVMK-ILKHVPWNSRK 283 (285)
Q Consensus 258 ~~~l~~ai~~~~~~~-~~~~~~~~~~~ 283 (285)
.+++.++|.+.+.++ ..++...++++
T Consensus 329 ~~~la~~i~~ll~d~~~~~~~~~~~~~ 355 (384)
T 1vgv_A 329 KQRIVEEVTRLLKDENEYQAMSRAHNP 355 (384)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHhChHHHhhhhhccCC
Confidence 789999998865544 34455555543
No 26
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=96.38 E-value=0.0024 Score=50.78 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=57.6
Q ss_pred ccceeeeecCh---hhhcccCccceEEe-cCCc-hhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCC
Q 042918 181 TRGQMVGCTPQ---QKFLSHPSIACFLR-HCGW-NPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGS 255 (285)
Q Consensus 181 ~~~~v~~w~PQ---~~iL~h~~v~~fit-HgG~-nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~ 255 (285)
+++.+.+|+|+ .++++..++..+-+ +-|+ ++++||+++|+|+|+... ..+...+.+ -+.|..+ .
T Consensus 78 ~~v~~~g~~~~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~-~~~g~~~-~----- 146 (177)
T 2f9f_A 78 DNVKFLGSVSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVIN-EKTGYLV-N----- 146 (177)
T ss_dssp TTEEEEESCCHHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCCB-TTTEEEE-C-----
T ss_pred CcEEEeCCCCHHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhcC-CCccEEe-C-----
Confidence 35677799998 56788888744322 3444 589999999999999753 445555544 3578877 3
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 042918 256 SQGKKLTTRWIKCSVMKI 273 (285)
Q Consensus 256 ~~~~~l~~ai~~~~~~~~ 273 (285)
-+.+++.++|.+...+..
T Consensus 147 ~d~~~l~~~i~~l~~~~~ 164 (177)
T 2f9f_A 147 ADVNEIIDAMKKVSKNPD 164 (177)
T ss_dssp SCHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHhCHH
Confidence 358999999998655544
No 27
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=95.90 E-value=0.018 Score=50.83 Aligned_cols=89 Identities=11% Similarity=-0.002 Sum_probs=59.7
Q ss_pred ccceeeeecChh---hhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCcc
Q 042918 181 TRGQMVGCTPQQ---KFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQ 257 (285)
Q Consensus 181 ~~~~v~~w~PQ~---~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~ 257 (285)
+++.+.+++++. ++|++.++ ||+..| +.++||+++|+|+|+.+..+.. .. +.+ .|.|+.+.. +
T Consensus 263 ~~v~~~g~~~~~~~~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~---~e-~v~-~g~g~~v~~------d 328 (375)
T 3beo_A 263 GRIHLIEPLDVIDFHNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER---PE-GIE-AGTLKLAGT------D 328 (375)
T ss_dssp TTEEEECCCCHHHHHHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC---HH-HHH-TTSEEECCS------C
T ss_pred CCEEEeCCCCHHHHHHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC---ce-eec-CCceEEcCC------C
Confidence 355665777654 56777776 888774 3488999999999998544443 22 334 378887752 4
Q ss_pred HHHHHHHHHHHHHHH-HhhccCccccc
Q 042918 258 GKKLTTRWIKCSVMK-ILKHVPWNSRK 283 (285)
Q Consensus 258 ~~~l~~ai~~~~~~~-~~~~~~~~~~~ 283 (285)
.+++.++|.+.+.++ ..++...++++
T Consensus 329 ~~~la~~i~~ll~~~~~~~~~~~~~~~ 355 (375)
T 3beo_A 329 EETIFSLADELLSDKEAHDKMSKASNP 355 (375)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHhChHhHhhhhhcCCC
Confidence 789999998865544 34555555544
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=95.79 E-value=0.0069 Score=53.81 Aligned_cols=77 Identities=6% Similarity=-0.030 Sum_probs=54.7
Q ss_pred cceeeeecCh---hhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccH
Q 042918 182 RGQMVGCTPQ---QKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQG 258 (285)
Q Consensus 182 ~~~v~~w~PQ---~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~ 258 (285)
++.+.++++. .++|+..++ ||+++| +.++||+++|+|+|+.+..+++.. +.+ .|.|+.+. .+.
T Consensus 256 ~v~~~g~~g~~~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~----~~~-~g~g~lv~------~d~ 321 (376)
T 1v4v_A 256 NFVLLDPLEYGSMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPE----GLK-AGILKLAG------TDP 321 (376)
T ss_dssp TEEEECCCCHHHHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHH----HHH-HTSEEECC------SCH
T ss_pred CEEEECCCCHHHHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchh----hhc-CCceEECC------CCH
Confidence 5566655554 478877776 888884 335699999999999877676655 234 48888774 257
Q ss_pred HHHHHHHHHHHHHH
Q 042918 259 KKLTTRWIKCSVMK 272 (285)
Q Consensus 259 ~~l~~ai~~~~~~~ 272 (285)
+++.+++.+.+.++
T Consensus 322 ~~la~~i~~ll~d~ 335 (376)
T 1v4v_A 322 EGVYRVVKGLLENP 335 (376)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCh
Confidence 88999988865443
No 29
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=95.22 E-value=0.013 Score=52.15 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=57.0
Q ss_pred ccceeeeecChh---hhcccCccceEEe--cCCc-hhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCC
Q 042918 181 TRGQMVGCTPQQ---KFLSHPSIACFLR--HCGW-NPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMG 254 (285)
Q Consensus 181 ~~~~v~~w~PQ~---~iL~h~~v~~fit--HgG~-nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~ 254 (285)
+++.+.+|+|+. ++++..++..+-+ +-|+ ++++||+++|+|+|+.+. ......+.+ -+.|..+..+
T Consensus 263 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~-~~~g~~~~~~--- 334 (406)
T 2gek_A 263 GHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAFRRVLAD-GDAGRLVPVD--- 334 (406)
T ss_dssp GGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHHHHHHTT-TTSSEECCTT---
T ss_pred CcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecC----CcHHHHhcC-CCceEEeCCC---
Confidence 455667999975 6788888854443 4454 589999999999999765 445555654 3678877653
Q ss_pred CccHHHHHHHHHHHHHH
Q 042918 255 SSQGKKLTTRWIKCSVM 271 (285)
Q Consensus 255 ~~~~~~l~~ai~~~~~~ 271 (285)
+.+++.++|.+.+.+
T Consensus 335 --d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 335 --DADGMAAALIGILED 349 (406)
T ss_dssp --CHHHHHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHcC
Confidence 478888888875443
No 30
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=94.81 E-value=0.02 Score=51.73 Aligned_cols=81 Identities=7% Similarity=-0.068 Sum_probs=54.4
Q ss_pred ccceeeeecChh---hhcccCccceEEec--CCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCC
Q 042918 181 TRGQMVGCTPQQ---KFLSHPSIACFLRH--CGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGS 255 (285)
Q Consensus 181 ~~~~v~~w~PQ~---~iL~h~~v~~fitH--gG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~ 255 (285)
+++.+.+|+|+. ++|+..++..+-+. +.-++++||+++|+|+|+-+. ......+.+ -+.|+.++..
T Consensus 306 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~-~~~g~~~~~~---- 376 (438)
T 3c48_A 306 KRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARV----GGLPIAVAE-GETGLLVDGH---- 376 (438)
T ss_dssp TTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESC----TTHHHHSCB-TTTEEEESSC----
T ss_pred CcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCC----CChhHHhhC-CCcEEECCCC----
Confidence 455677999874 46777777333222 224689999999999999753 344455544 3578877753
Q ss_pred ccHHHHHHHHHHHHHH
Q 042918 256 SQGKKLTTRWIKCSVM 271 (285)
Q Consensus 256 ~~~~~l~~ai~~~~~~ 271 (285)
+.+++.++|.+.+.+
T Consensus 377 -d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 377 -SPHAWADALATLLDD 391 (438)
T ss_dssp -CHHHHHHHHHHHHHC
T ss_pred -CHHHHHHHHHHHHcC
Confidence 478888888875443
No 31
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=94.59 E-value=0.038 Score=48.54 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=53.7
Q ss_pred cceeeeecCh-hhhcccCccceEEe--cCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccH
Q 042918 182 RGQMVGCTPQ-QKFLSHPSIACFLR--HCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQG 258 (285)
Q Consensus 182 ~~~v~~w~PQ-~~iL~h~~v~~fit--HgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~ 258 (285)
++.+.++..+ .++++..++..+-+ .+.-++++||+++|+|+|+.+. ..+...+.+ -+.|..+... -+.
T Consensus 254 ~v~~~g~~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~~----~~~ 324 (374)
T 2iw1_A 254 NVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYIAD-ANCGTVIAEP----FSQ 324 (374)
T ss_dssp GEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHHHH-HTCEEEECSS----CCH
T ss_pred cEEECCCcccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhhcc-CCceEEeCCC----CCH
Confidence 4455565433 34666666632222 3556889999999999999765 345566766 4889988732 257
Q ss_pred HHHHHHHHHHHHH
Q 042918 259 KKLTTRWIKCSVM 271 (285)
Q Consensus 259 ~~l~~ai~~~~~~ 271 (285)
+++.++|.+.+.+
T Consensus 325 ~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 325 EQLNEVLRKALTQ 337 (374)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 8898888876443
No 32
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=94.22 E-value=0.049 Score=48.14 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=53.5
Q ss_pred cccceeeeecChhh---hcccCccceEEe---------cCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEE
Q 042918 180 GTRGQMVGCTPQQK---FLSHPSIACFLR---------HCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQR 247 (285)
Q Consensus 180 ~~~~~v~~w~PQ~~---iL~h~~v~~fit---------HgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~ 247 (285)
.+++.+.+|+|+.+ +++..++..+-+ -|.-++++||+++|+|+|+-+.- .....+.+ |.|..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~i~~--~~g~~ 325 (394)
T 3okp_A 252 SQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSG----GAPETVTP--ATGLV 325 (394)
T ss_dssp GGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSST----TGGGGCCT--TTEEE
T ss_pred cCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCC----ChHHHHhc--CCceE
Confidence 35567779998776 567777744433 34457899999999999997653 23333332 47777
Q ss_pred eecCCCCCccHHHHHHHHHHHH
Q 042918 248 FNKTKMGSSQGKKLTTRWIKCS 269 (285)
Q Consensus 248 l~~~~~~~~~~~~l~~ai~~~~ 269 (285)
+... +.+++.++|.+..
T Consensus 326 ~~~~-----d~~~l~~~i~~l~ 342 (394)
T 3okp_A 326 VEGS-----DVDKLSELLIELL 342 (394)
T ss_dssp CCTT-----CHHHHHHHHHHHH
T ss_pred eCCC-----CHHHHHHHHHHHH
Confidence 7753 4788888887753
No 33
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=94.19 E-value=0.018 Score=51.61 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=40.8
Q ss_pred CchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHHHHH
Q 042918 208 GWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKCSVM 271 (285)
Q Consensus 208 G~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~~~~ 271 (285)
|.++++||+++|+|+|+-|-.++.......+.+ -|.++... +.+++.++|.+.+.+
T Consensus 291 gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~-~G~l~~~~-------d~~~La~ai~~ll~d 346 (374)
T 2xci_A 291 GGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEK-EGAGFEVK-------NETELVTKLTELLSV 346 (374)
T ss_dssp CCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHH-TTCEEECC-------SHHHHHHHHHHHHHS
T ss_pred CCcCHHHHHHhCCCEEECCCccChHHHHHHHHH-CCCEEEeC-------CHHHHHHHHHHHHhH
Confidence 347899999999999987776666666655544 37666653 368899999885543
No 34
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=93.86 E-value=0.061 Score=42.90 Aligned_cols=91 Identities=10% Similarity=-0.026 Sum_probs=59.1
Q ss_pred ccee-eeecChh---hhcccCccceEEec-CC-chhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCC
Q 042918 182 RGQM-VGCTPQQ---KFLSHPSIACFLRH-CG-WNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGS 255 (285)
Q Consensus 182 ~~~v-~~w~PQ~---~iL~h~~v~~fitH-gG-~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~ 255 (285)
+..+ .+|+|+. ++++..++..+-+. -| -++++||+++|+|+|+... ......+ + .+.|..+...
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~~-~-~~~g~~~~~~---- 165 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDII-T-NETGILVKAG---- 165 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESC----HHHHHHC-C-TTTCEEECTT----
T ss_pred CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCC----CChHHHc-C-CCceEEecCC----
Confidence 5667 7888854 46677776433332 23 3688999999999998753 3344444 4 4678887753
Q ss_pred ccHHHHHHHHHHHHH-H-HHhhccCccccc
Q 042918 256 SQGKKLTTRWIKCSV-M-KILKHVPWNSRK 283 (285)
Q Consensus 256 ~~~~~l~~ai~~~~~-~-~~~~~~~~~~~~ 283 (285)
+.+++.++|.+.+. + +.+++...++++
T Consensus 166 -~~~~l~~~i~~l~~~~~~~~~~~~~~a~~ 194 (200)
T 2bfw_A 166 -DPGELANAILKALELSRSDLSKFRENCKK 194 (200)
T ss_dssp -CHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 58899999988654 3 334555555443
No 35
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=93.49 E-value=0.12 Score=46.62 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=53.7
Q ss_pred ccceeeeecC---hhhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCcc
Q 042918 181 TRGQMVGCTP---QQKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQ 257 (285)
Q Consensus 181 ~~~~v~~w~P---Q~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~ 257 (285)
++..+.++++ -..++++.++ ||+-.| +.+.||.++|+|+|+..-.++++ . +++ .|.++.+.. +
T Consensus 288 ~~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~---e-~v~-~G~~~lv~~------d 353 (396)
T 3dzc_A 288 SNIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRETTERP---E-AVA-AGTVKLVGT------N 353 (396)
T ss_dssp TTEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCSSCSCH---H-HHH-HTSEEECTT------C
T ss_pred CCEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccCCCcch---H-HHH-cCceEEcCC------C
Confidence 3456656554 3456777776 898888 55579999999999975555543 2 334 487765542 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 042918 258 GKKLTTRWIKCSVMKI 273 (285)
Q Consensus 258 ~~~l~~ai~~~~~~~~ 273 (285)
.++|.+++.+.+.++.
T Consensus 354 ~~~l~~ai~~ll~d~~ 369 (396)
T 3dzc_A 354 QQQICDALSLLLTDPQ 369 (396)
T ss_dssp HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCHH
Confidence 8899999988655443
No 36
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=93.44 E-value=0.086 Score=47.76 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=54.4
Q ss_pred ccceeeeecChh---hhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCcc
Q 042918 181 TRGQMVGCTPQQ---KFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQ 257 (285)
Q Consensus 181 ~~~~v~~w~PQ~---~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~ 257 (285)
++..+.+++++. .++++.++ +||-.|. .+.||.++|+|+|+.|-.++++. +++ .|.|+.+.. +
T Consensus 282 ~~v~l~~~l~~~~~~~l~~~ad~--vv~~SGg-~~~EA~a~g~PvV~~~~~~~~~e----~v~-~g~~~lv~~------d 347 (403)
T 3ot5_A 282 ERIHLIEPLDAIDFHNFLRKSYL--VFTDSGG-VQEEAPGMGVPVLVLRDTTERPE----GIE-AGTLKLIGT------N 347 (403)
T ss_dssp TTEEEECCCCHHHHHHHHHHEEE--EEECCHH-HHHHGGGTTCCEEECCSSCSCHH----HHH-HTSEEECCS------C
T ss_pred CCEEEeCCCCHHHHHHHHHhcCE--EEECCcc-HHHHHHHhCCCEEEecCCCcchh----hee-CCcEEEcCC------C
Confidence 355677877643 46666665 8887752 22699999999999976676654 234 488877762 5
Q ss_pred HHHHHHHHHHHHHHH
Q 042918 258 GKKLTTRWIKCSVMK 272 (285)
Q Consensus 258 ~~~l~~ai~~~~~~~ 272 (285)
.++|.+++.+.+.++
T Consensus 348 ~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 348 KENLIKEALDLLDNK 362 (403)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHcCH
Confidence 888998888765444
No 37
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=92.49 E-value=0.079 Score=47.47 Aligned_cols=76 Identities=8% Similarity=-0.073 Sum_probs=51.9
Q ss_pred eeeeecChhh---hcccCccceEEec-CC-chhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccH
Q 042918 184 QMVGCTPQQK---FLSHPSIACFLRH-CG-WNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQG 258 (285)
Q Consensus 184 ~v~~w~PQ~~---iL~h~~v~~fitH-gG-~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~ 258 (285)
...+|+|+.+ +++..++..+-++ -| -++++||+++|+|+|+-.. ......+.+ |.|..+... +.
T Consensus 314 ~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~~~--~~g~~~~~~-----d~ 382 (439)
T 3fro_A 314 VITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDIITN--ETGILVKAG-----DP 382 (439)
T ss_dssp EECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHCCT--TTCEEECTT-----CH
T ss_pred EEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeEEc--CceEEeCCC-----CH
Confidence 3458899865 5677777443332 23 3789999999999999643 334444432 688888764 47
Q ss_pred HHHHHHHHHHHH
Q 042918 259 KKLTTRWIKCSV 270 (285)
Q Consensus 259 ~~l~~ai~~~~~ 270 (285)
+++.++|.+.+.
T Consensus 383 ~~la~~i~~ll~ 394 (439)
T 3fro_A 383 GELANAILKALE 394 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887554
No 38
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.43 E-value=0.22 Score=46.67 Aligned_cols=83 Identities=8% Similarity=-0.026 Sum_probs=49.3
Q ss_pred ccceeeeecChhh---hcccCccceEEec-CCchhHHHhHhcCceeEeccccccchhh-HHHHHHHhcceEEeecCCCCC
Q 042918 181 TRGQMVGCTPQQK---FLSHPSIACFLRH-CGWNPTTEGVSNGLAFLCWPYFAEQFLN-ESYICAIRKVGQRFNKTKMGS 255 (285)
Q Consensus 181 ~~~~v~~w~PQ~~---iL~h~~v~~fitH-gG~nS~~Ea~~~GvP~v~~P~~~DQ~~n-a~~~~~~~gvG~~l~~~~~~~ 255 (285)
+++.+.+|+|+.+ +++..++-++=++ |+-++++||+++|+|+|+.|-..=.... +..+.+ .|+...+..
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~-~g~~e~v~~----- 507 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHH-LGLDEMNVA----- 507 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHH-HTCGGGBCS-----
T ss_pred hHEEeeCCCCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHH-CCChhhhcC-----
Confidence 4566779998654 4677776332232 5567899999999999997632111111 233333 355443432
Q ss_pred ccHHHHHHHHHHHHH
Q 042918 256 SQGKKLTTRWIKCSV 270 (285)
Q Consensus 256 ~~~~~l~~ai~~~~~ 270 (285)
+.+++.+++.+...
T Consensus 508 -~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 508 -DDAAFVAKAVALAS 521 (568)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhc
Confidence 56777777776543
No 39
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=91.94 E-value=0.13 Score=46.16 Aligned_cols=77 Identities=9% Similarity=-0.057 Sum_probs=50.1
Q ss_pred ccceeeeecC---hh---hhcccCccceEEecC----CchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeec
Q 042918 181 TRGQMVGCTP---QQ---KFLSHPSIACFLRHC----GWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNK 250 (285)
Q Consensus 181 ~~~~v~~w~P---Q~---~iL~h~~v~~fitHg----G~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~ 250 (285)
+++.+.+|++ +. ++++..++ ||.-. .-++++||+++|+|+|+-+. ..+...+.+ -+.|..++
T Consensus 293 ~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~~-~~~g~l~~- 364 (416)
T 2x6q_A 293 YDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIVD-GETGFLVR- 364 (416)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCCB-TTTEEEES-
T ss_pred CcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhheec-CCCeEEEC-
Confidence 4556668765 22 35666666 44322 34689999999999999764 334445544 35777775
Q ss_pred CCCCCccHHHHHHHHHHHHHH
Q 042918 251 TKMGSSQGKKLTTRWIKCSVM 271 (285)
Q Consensus 251 ~~~~~~~~~~l~~ai~~~~~~ 271 (285)
+.+++.++|.+.+.+
T Consensus 365 ------d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 365 ------DANEAVEVVLYLLKH 379 (416)
T ss_dssp ------SHHHHHHHHHHHHHC
T ss_pred ------CHHHHHHHHHHHHhC
Confidence 367888888775443
No 40
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=91.92 E-value=0.088 Score=46.67 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=56.5
Q ss_pred cceeeeecChhhhcc---cCccceEEecCC----------chhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEe
Q 042918 182 RGQMVGCTPQQKFLS---HPSIACFLRHCG----------WNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRF 248 (285)
Q Consensus 182 ~~~v~~w~PQ~~iL~---h~~v~~fitHgG----------~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l 248 (285)
|+...+|+|+.++.. ..+.+... .-| -+-+.|++++|+|+|+.+ ...++..+.+ .++|+.+
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~-~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~~-~~~G~~~ 288 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVW-MDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIEN-NGLGWIV 288 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECC-CCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHHH-HTCEEEE
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEE-CCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHHh-CCeEEEe
Confidence 457779999988653 33444333 222 234789999999999865 4567778877 5999988
Q ss_pred ecCCCCCccHHHHHHHHHHHHHHHHhhccCcccc
Q 042918 249 NKTKMGSSQGKKLTTRWIKCSVMKILKHVPWNSR 282 (285)
Q Consensus 249 ~~~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~~ 282 (285)
+. .+++.+++.+. ..+.+++...|++
T Consensus 289 ~~-------~~e~~~~i~~l-~~~~~~~m~~na~ 314 (339)
T 3rhz_A 289 KD-------VEEAIMKVKNV-NEDEYIELVKNVR 314 (339)
T ss_dssp SS-------HHHHHHHHHHC-CHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 62 46666666653 2344555544443
No 41
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=91.79 E-value=0.29 Score=44.05 Aligned_cols=77 Identities=10% Similarity=-0.107 Sum_probs=52.7
Q ss_pred cceeeeecCh---hhhcccCccceEEecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccH
Q 042918 182 RGQMVGCTPQ---QKFLSHPSIACFLRHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQG 258 (285)
Q Consensus 182 ~~~v~~w~PQ---~~iL~h~~v~~fitHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~ 258 (285)
+..+.+.++. ..++++..+ +||-.|.. +.||.+.|+|+|..+-..+.+. .++ .|.++.+. .+.
T Consensus 264 ~v~l~~~lg~~~~~~l~~~adl--vvt~SGgv-~~EA~alG~Pvv~~~~~ter~e----~v~-~G~~~lv~------~d~ 329 (385)
T 4hwg_A 264 KIRFLPAFSFTDYVKLQMNAFC--ILSDSGTI-TEEASILNLPALNIREAHERPE----GMD-AGTLIMSG------FKA 329 (385)
T ss_dssp GEEECCCCCHHHHHHHHHHCSE--EEECCTTH-HHHHHHTTCCEEECSSSCSCTH----HHH-HTCCEECC------SSH
T ss_pred CEEEEcCCCHHHHHHHHHhCcE--EEECCccH-HHHHHHcCCCEEEcCCCccchh----hhh-cCceEEcC------CCH
Confidence 4455444443 457777776 88887764 6899999999999986554222 234 48777665 358
Q ss_pred HHHHHHHHHHHHHH
Q 042918 259 KKLTTRWIKCSVMK 272 (285)
Q Consensus 259 ~~l~~ai~~~~~~~ 272 (285)
++|.+++.+.+.++
T Consensus 330 ~~i~~ai~~ll~d~ 343 (385)
T 4hwg_A 330 ERVLQAVKTITEEH 343 (385)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCh
Confidence 89999998865443
No 42
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=91.53 E-value=0.12 Score=47.59 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=51.5
Q ss_pred ccceeeeecChhh---hcccC----ccceEEec-CC-chhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecC
Q 042918 181 TRGQMVGCTPQQK---FLSHP----SIACFLRH-CG-WNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKT 251 (285)
Q Consensus 181 ~~~~v~~w~PQ~~---iL~h~----~v~~fitH-gG-~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~ 251 (285)
+++.+.+|+|+.+ +++.. ++-.+-++ -| -++++||+++|+|+|+-.. ......+.+ -+.|..++..
T Consensus 335 ~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~~-~~~g~l~~~~ 409 (499)
T 2r60_A 335 GKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILDG-GKYGVLVDPE 409 (499)
T ss_dssp TTEEEEECCSHHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTGG-GTSSEEECTT
T ss_pred ceEEECCCCCHHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhcC-CceEEEeCCC
Confidence 4556679998764 55666 55332222 23 3689999999999999753 334444544 3478888753
Q ss_pred CCCCccHHHHHHHHHHHH
Q 042918 252 KMGSSQGKKLTTRWIKCS 269 (285)
Q Consensus 252 ~~~~~~~~~l~~ai~~~~ 269 (285)
+.+++.++|.+.+
T Consensus 410 -----d~~~la~~i~~ll 422 (499)
T 2r60_A 410 -----DPEDIARGLLKAF 422 (499)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHH
Confidence 4778888887653
No 43
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=91.21 E-value=0.074 Score=47.31 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=49.5
Q ss_pred cceeeeecCh-hhhcccCccceEE--ecCCchhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccH
Q 042918 182 RGQMVGCTPQ-QKFLSHPSIACFL--RHCGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQG 258 (285)
Q Consensus 182 ~~~v~~w~PQ-~~iL~h~~v~~fi--tHgG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~ 258 (285)
++.+.++..+ .++|+..++..+- ..+.-++++||+++|+|+|+.+.- .....+.+ -+.|..++.. +.
T Consensus 268 ~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~----~~~e~v~~-~~~g~~~~~~-----d~ 337 (394)
T 2jjm_A 268 RVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVG----GIPEVIQH-GDTGYLCEVG-----DT 337 (394)
T ss_dssp GBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCT----TSTTTCCB-TTTEEEECTT-----CH
T ss_pred eEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCC----ChHHHhhc-CCceEEeCCC-----CH
Confidence 3344454332 3466666663222 344557899999999999998753 22233333 3578777753 47
Q ss_pred HHHHHHHHHHHHHH
Q 042918 259 KKLTTRWIKCSVMK 272 (285)
Q Consensus 259 ~~l~~ai~~~~~~~ 272 (285)
+++.++|.+.+.++
T Consensus 338 ~~la~~i~~l~~~~ 351 (394)
T 2jjm_A 338 TGVADQAIQLLKDE 351 (394)
T ss_dssp HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHcCH
Confidence 88888888754433
No 44
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=91.13 E-value=0.16 Score=46.02 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=52.9
Q ss_pred cceeeeecChhh---hcccCccceEEec-CCc-hhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCc
Q 042918 182 RGQMVGCTPQQK---FLSHPSIACFLRH-CGW-NPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSS 256 (285)
Q Consensus 182 ~~~v~~w~PQ~~---iL~h~~v~~fitH-gG~-nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~ 256 (285)
++...+++|+.+ +++..++-.+-+. =|. +.++||+++|+|+|+ -..+ ....+.+ -..|+.+...
T Consensus 296 ~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v~~-~~~G~lv~~~----- 364 (413)
T 2x0d_A 296 HLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLSNW-HSNIVSLEQL----- 364 (413)
T ss_dssp EEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGGGT-BTTEEEESSC-----
T ss_pred cEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhhhc-CCCEEEeCCC-----
Confidence 455668888765 5667777444333 133 578999999999998 3222 1123433 2468877754
Q ss_pred cHHHHHHHHHHHHHHHHhhc
Q 042918 257 QGKKLTTRWIKCSVMKILKH 276 (285)
Q Consensus 257 ~~~~l~~ai~~~~~~~~~~~ 276 (285)
+.+++.++|.+.+.++.+.+
T Consensus 365 d~~~la~ai~~ll~~~~~~~ 384 (413)
T 2x0d_A 365 NPENIAETLVELCMSFNNRD 384 (413)
T ss_dssp SHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHcCHHHHH
Confidence 58899999998766555443
No 45
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=89.52 E-value=0.19 Score=38.59 Aligned_cols=88 Identities=10% Similarity=0.133 Sum_probs=48.6
Q ss_pred cceeeeecChhh---hcccCccceEEe--cCCchhHHHhHhcCc-eeEeccccccchhhHHHHHHHhcceEEeecCCCCC
Q 042918 182 RGQMVGCTPQQK---FLSHPSIACFLR--HCGWNPTTEGVSNGL-AFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGS 255 (285)
Q Consensus 182 ~~~v~~w~PQ~~---iL~h~~v~~fit--HgG~nS~~Ea~~~Gv-P~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~ 255 (285)
+..+ +|+|+.+ +++..++..+-+ -+.-++++||+++|. |+|+-.-.+ .....+.+ -+. .+..
T Consensus 57 ~v~~-g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~---~~~~~~~~-~~~--~~~~----- 124 (166)
T 3qhp_A 57 KAEF-GFVNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLS---ATRQFALD-ERS--LFEP----- 124 (166)
T ss_dssp EEEC-CCCCHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTC---GGGGGCSS-GGG--EECT-----
T ss_pred eEEE-eecCHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCC---chhhhccC-Cce--EEcC-----
Confidence 3455 8888754 567777643333 233469999999995 999932111 11112222 122 3332
Q ss_pred ccHHHHHHHHHHHHHHHH-hhccCccc
Q 042918 256 SQGKKLTTRWIKCSVMKI-LKHVPWNS 281 (285)
Q Consensus 256 ~~~~~l~~ai~~~~~~~~-~~~~~~~~ 281 (285)
-+.+++.++|.+...+.. +++...++
T Consensus 125 ~~~~~l~~~i~~l~~~~~~~~~~~~~~ 151 (166)
T 3qhp_A 125 NNAKDLSAKIDWWLENKLERERMQNEY 151 (166)
T ss_dssp TCHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 257888888887544332 33444333
No 46
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=89.51 E-value=0.25 Score=42.89 Aligned_cols=77 Identities=8% Similarity=-0.011 Sum_probs=48.9
Q ss_pred ccceeeeecChh---hhcccCccceEEec-----------CCc-hhHHHhHhcCceeEeccccccchhhHHHHHHH-hcc
Q 042918 181 TRGQMVGCTPQQ---KFLSHPSIACFLRH-----------CGW-NPTTEGVSNGLAFLCWPYFAEQFLNESYICAI-RKV 244 (285)
Q Consensus 181 ~~~~v~~w~PQ~---~iL~h~~v~~fitH-----------gG~-nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~-~gv 244 (285)
+++.+.+|+|+. ++++..++-.+-+. -|+ ++++||+++|+|+|+-.. ..+...+.+. -+.
T Consensus 212 ~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~~~~~~~~ 287 (342)
T 2iuy_A 212 STVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIVPSVGEVV 287 (342)
T ss_dssp TTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHGGGGEEEC
T ss_pred CCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHhcccCCCc
Confidence 456677999976 67888887444443 233 789999999999999875 2344444320 134
Q ss_pred eEEeecCCCCCccHHHHHHHHHH
Q 042918 245 GQRFNKTKMGSSQGKKLTTRWIK 267 (285)
Q Consensus 245 G~~l~~~~~~~~~~~~l~~ai~~ 267 (285)
|+.++. +.+++.++|.+
T Consensus 288 g~~~~~------d~~~l~~~i~~ 304 (342)
T 2iuy_A 288 GYGTDF------APDEARRTLAG 304 (342)
T ss_dssp CSSSCC------CHHHHHHHHHT
T ss_pred eEEcCC------CHHHHHHHHHH
Confidence 554442 35666666654
No 47
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=87.29 E-value=0.24 Score=44.21 Aligned_cols=42 Identities=7% Similarity=-0.062 Sum_probs=28.9
Q ss_pred eeeecChhh---hcccCccceEEec--CCchhHHHhHhcCceeEecc
Q 042918 185 MVGCTPQQK---FLSHPSIACFLRH--CGWNPTTEGVSNGLAFLCWP 226 (285)
Q Consensus 185 v~~w~PQ~~---iL~h~~v~~fitH--gG~nS~~Ea~~~GvP~v~~P 226 (285)
+.+|+|+.+ +++..++-.+-+. |.-++++||+++|+|+|+-.
T Consensus 258 ~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~ 304 (413)
T 3oy2_A 258 NRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLIISA 304 (413)
T ss_dssp ECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEEEC
T ss_pred ccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEEcC
Confidence 348888555 4666676443333 22368999999999999864
No 48
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=87.28 E-value=0.85 Score=44.57 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=37.6
Q ss_pred ccceeeeecChhhhcc-cCccceEEe---cCCchhHHHhHhcCceeEeccccccch
Q 042918 181 TRGQMVGCTPQQKFLS-HPSIACFLR---HCGWNPTTEGVSNGLAFLCWPYFAEQF 232 (285)
Q Consensus 181 ~~~~v~~w~PQ~~iL~-h~~v~~fit---HgG~nS~~Ea~~~GvP~v~~P~~~DQ~ 232 (285)
+|..+.+.+|..+-|+ +..+..|+- .+|.+++.||+++|||+|++| ++++
T Consensus 580 ~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~--g~~~ 633 (723)
T 4gyw_A 580 NRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMP--GETL 633 (723)
T ss_dssp GGEEEEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCC--CSSG
T ss_pred CeEEECCCCCHHHHHHHhCCCeEEeCCCCcCCHHHHHHHHHcCCCEEEcc--CCCc
Confidence 4556668888777553 344455765 889999999999999999998 5543
No 49
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=85.61 E-value=0.39 Score=46.00 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=33.7
Q ss_pred cccceeeeecChhhhc---ccCccceEE-ecCCchhHHHhHhcCceeEecc
Q 042918 180 GTRGQMVGCTPQQKFL---SHPSIACFL-RHCGWNPTTEGVSNGLAFLCWP 226 (285)
Q Consensus 180 ~~~~~v~~w~PQ~~iL---~h~~v~~fi-tHgG~nS~~Ea~~~GvP~v~~P 226 (285)
.++..+.+.+|+.+.| ...++-+.= ..+|.++++||+++|||+|+.+
T Consensus 498 ~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~ 548 (631)
T 3q3e_A 498 GDSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKT 548 (631)
T ss_dssp GGGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEEC
T ss_pred CccEEEcCCCCHHHHHHHHhcCcEEEeCCcccCChHHHHHHHcCCCEEecc
Confidence 3455666888877655 555552221 2377899999999999999986
No 50
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=85.48 E-value=0.67 Score=41.66 Aligned_cols=77 Identities=6% Similarity=0.009 Sum_probs=52.5
Q ss_pred ccceeeeecChhh---hcccCccceEEec-CCc-hhHHHhH-------hcCceeEeccccccchhhHHHHHHHhcceEE-
Q 042918 181 TRGQMVGCTPQQK---FLSHPSIACFLRH-CGW-NPTTEGV-------SNGLAFLCWPYFAEQFLNESYICAIRKVGQR- 247 (285)
Q Consensus 181 ~~~~v~~w~PQ~~---iL~h~~v~~fitH-gG~-nS~~Ea~-------~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~- 247 (285)
+++...+++|+.+ +++..++.++-++ -|+ ++++||+ ++|+|+|+-.. +.+ -..|..
T Consensus 265 ~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~-~~~G~l~ 333 (406)
T 2hy7_A 265 DNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVG-PYKSRFG 333 (406)
T ss_dssp TTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTC-SCSSEEE
T ss_pred CCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------ccc-CcceEEE
Confidence 3456779998754 5677777443332 344 6789999 99999999765 433 245776
Q ss_pred eecCCCCCccHHHHHHHHHHHHHHHH
Q 042918 248 FNKTKMGSSQGKKLTTRWIKCSVMKI 273 (285)
Q Consensus 248 l~~~~~~~~~~~~l~~ai~~~~~~~~ 273 (285)
+..+ +.+++.++|.+.+.++.
T Consensus 334 v~~~-----d~~~la~ai~~ll~~~~ 354 (406)
T 2hy7_A 334 YTPG-----NADSVIAAITQALEAPR 354 (406)
T ss_dssp ECTT-----CHHHHHHHHHHHHHCCC
T ss_pred eCCC-----CHHHHHHHHHHHHhCcc
Confidence 6654 58899999988655443
No 51
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=83.40 E-value=0.6 Score=42.60 Aligned_cols=77 Identities=8% Similarity=-0.094 Sum_probs=48.8
Q ss_pred cce-eeeecChh---hhcccCccceEEec--CCchhHHHhHhcCceeEeccccccchhhHHHHHHHh---------cceE
Q 042918 182 RGQ-MVGCTPQQ---KFLSHPSIACFLRH--CGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIR---------KVGQ 246 (285)
Q Consensus 182 ~~~-v~~w~PQ~---~iL~h~~v~~fitH--gG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~---------gvG~ 246 (285)
++. ..++ ++. ++++..++-.+-+. +.-++++||+++|+|+|+-.. ......+.+ - +.|.
T Consensus 347 ~v~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v~~-~~~~~~~~~~~~G~ 420 (485)
T 1rzu_A 347 RVGVAIGY-NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTVID-ANHAALASKAATGV 420 (485)
T ss_dssp TEEEEESC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCCB-CCHHHHHTTCCCBE
T ss_pred cEEEecCC-CHHHHHHHHhcCCEEEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhheecc-cccccccccCCcce
Confidence 444 3466 433 46777776333232 334689999999999999754 333444432 2 4788
Q ss_pred EeecCCCCCccHHHHHHHHHHHH
Q 042918 247 RFNKTKMGSSQGKKLTTRWIKCS 269 (285)
Q Consensus 247 ~l~~~~~~~~~~~~l~~ai~~~~ 269 (285)
.+... +.+++.++|.+.+
T Consensus 421 l~~~~-----d~~~la~~i~~ll 438 (485)
T 1rzu_A 421 QFSPV-----TLDGLKQAIRRTV 438 (485)
T ss_dssp EESSC-----SHHHHHHHHHHHH
T ss_pred EeCCC-----CHHHHHHHHHHHH
Confidence 77653 5788888888754
No 52
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=82.55 E-value=0.68 Score=42.24 Aligned_cols=78 Identities=9% Similarity=-0.019 Sum_probs=49.0
Q ss_pred cce-eeeecCh--hhhcccCccceEEec--CCchhHHHhHhcCceeEeccccccchhhHHHHHHHh---------cceEE
Q 042918 182 RGQ-MVGCTPQ--QKFLSHPSIACFLRH--CGWNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIR---------KVGQR 247 (285)
Q Consensus 182 ~~~-v~~w~PQ--~~iL~h~~v~~fitH--gG~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~---------gvG~~ 247 (285)
+.. ..++..+ .++++..++-.+-+. +.-++++||+++|+|+|+-.. ..+...+.+ - +.|..
T Consensus 348 ~v~~~~g~~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v~~-~~~~~~~~~~~~G~l 422 (485)
T 2qzs_A 348 QVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTVSD-CSLENLADGVASGFV 422 (485)
T ss_dssp TEEEEESCCHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCCB-CCHHHHHTTCCCBEE
T ss_pred cEEEeCCCCHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCC----CCccceecc-CccccccccccceEE
Confidence 443 4467322 256777777333332 334688999999999999754 333344432 2 47888
Q ss_pred eecCCCCCccHHHHHHHHHHHH
Q 042918 248 FNKTKMGSSQGKKLTTRWIKCS 269 (285)
Q Consensus 248 l~~~~~~~~~~~~l~~ai~~~~ 269 (285)
+... +.+++.++|.+.+
T Consensus 423 ~~~~-----d~~~la~~i~~ll 439 (485)
T 2qzs_A 423 FEDS-----NAWSLLRAIRRAF 439 (485)
T ss_dssp ECSS-----SHHHHHHHHHHHH
T ss_pred ECCC-----CHHHHHHHHHHHH
Confidence 7753 5788888888754
No 53
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=81.41 E-value=0.77 Score=45.51 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=36.0
Q ss_pred chhHHHhHhcCceeEeccccccchhhHHHHHHHhcceEEeecCCCCCccHHHHHHHHHHH
Q 042918 209 WNPTTEGVSNGLAFLCWPYFAEQFLNESYICAIRKVGQRFNKTKMGSSQGKKLTTRWIKC 268 (285)
Q Consensus 209 ~nS~~Ea~~~GvP~v~~P~~~DQ~~na~~~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~ 268 (285)
-++++||+++|+|+|+- |.......+.+ -+.|+.++.. +.+++.++|.+.
T Consensus 678 glvllEAMA~G~PVIas----d~GG~~EiV~d-g~~Gllv~p~-----D~e~LA~aI~~l 727 (816)
T 3s28_A 678 GLTVVEAMTCGLPTFAT----CKGGPAEIIVH-GKSGFHIDPY-----HGDQAADTLADF 727 (816)
T ss_dssp CHHHHHHHHTTCCEEEE----SSBTHHHHCCB-TTTBEEECTT-----SHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCEEEe----CCCChHHHHcc-CCcEEEeCCC-----CHHHHHHHHHHH
Confidence 36899999999999995 44445555544 3578888764 477888887653
No 54
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=72.77 E-value=2.3 Score=31.52 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH---cCCceEEEe
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEE---MKIRRAAYL 47 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~---lgiP~i~~~ 47 (285)
-++.++.+.+ .+||+||.|..++ -+..+++. .++|.+.++
T Consensus 42 g~eAl~~~~~---~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 42 MQEALDIARK---GQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHHHHH---CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHHHHHh---CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 3455665554 3799999998876 45555554 478877544
No 55
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=71.49 E-value=4.2 Score=30.49 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=28.8
Q ss_pred HHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 7 ELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 7 ~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
+.++.+.. .+||+||.|..+| -+..+++++ ++|.+.++..+
T Consensus 48 ~al~~~~~---~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 48 TALPMLKK---GDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHHH---HCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHHh---CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 34444443 2699999999887 577777765 58888877654
No 56
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=70.04 E-value=7.3 Score=31.26 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcchhHHHHHHHcCCceEEEecch
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMGWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~~ 50 (285)
+..++.+++++++| +++||-|.. +..+|+++|+|.+.+.+..
T Consensus 129 ~e~~~~i~~l~~~G---~~vvVG~~~---~~~~A~~~Gl~~vli~sg~ 170 (196)
T 2q5c_A 129 DEITTLISKVKTEN---IKIVVSGKT---VTDEAIKQGLYGETINSGE 170 (196)
T ss_dssp GGHHHHHHHHHHTT---CCEEEECHH---HHHHHHHTTCEEEECCCCH
T ss_pred HHHHHHHHHHHHCC---CeEEECCHH---HHHHHHHcCCcEEEEecCH
Confidence 56788999998865 999999854 6888999999999876643
No 57
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=64.90 E-value=8.3 Score=34.33 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhcCCCCccEEEe--CCcchhHHHHHHHcCCceEEEe
Q 042918 4 KLEELIEEINRQEDEKISCVIA--DGAMGWAMVAAEEMKIRRAAYL 47 (285)
Q Consensus 4 ~~~~ll~~l~~~~~~~~d~vI~--D~~~~~~~~~A~~lgiP~i~~~ 47 (285)
.+++++++. +||+|++ |....++...|+++|||.+.+.
T Consensus 85 ~l~~~l~~~------kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~e 124 (385)
T 4hwg_A 85 KVDEVLEKE------KPDAVLFYGDTNSCLSAIAAKRRKIPIFHME 124 (385)
T ss_dssp HHHHHHHHH------CCSEEEEESCSGGGGGHHHHHHTTCCEEEES
T ss_pred HHHHHHHhc------CCcEEEEECCchHHHHHHHHHHhCCCEEEEe
Confidence 345555554 6998765 4445555778999999987654
No 58
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=64.11 E-value=10 Score=26.91 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=28.7
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
.++.++.+.. .+||+||.|..++ -+..+.+++ ++|.+.++...
T Consensus 35 ~~~al~~l~~---~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 35 GQIALEKLSE---FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHHHHTT---BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHHHHh---cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 3455555543 3699999998775 466666654 57888777544
No 59
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=62.02 E-value=10 Score=31.25 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=33.4
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcchhHHHHHHHcCCceEEEec
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMGWAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 48 (285)
+..++.+++++++| +++||-|.. +..+|+++|+|.+.+.+
T Consensus 141 ee~~~~i~~l~~~G---~~vVVG~~~---~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 141 EDARGQINELKANG---TEAVVGAGL---ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHHHHHHHHHTT---CCEEEESHH---HHHHHHHTTSEEEESSC
T ss_pred HHHHHHHHHHHHCC---CCEEECCHH---HHHHHHHcCCcEEEECC
Confidence 46788899998865 999999854 68889999999998774
No 60
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=56.09 E-value=16 Score=26.27 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=27.2
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
+++++.+.. .+||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 38 ~~al~~~~~---~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 38 EEALQQIYK---NLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHHHH---SCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 455555544 3699999998765 355555443 57888776544
No 61
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=53.36 E-value=22 Score=24.87 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH----cCCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEE----MKIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~----lgiP~i~~~~~~ 50 (285)
.+++++.+.. .+||+||.|..++ -+..+.+. .++|.+.++...
T Consensus 35 ~~~al~~~~~---~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 35 GNEAVEMVEE---LQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHHHHHHHT---TCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHHHHHHHhh---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 3455555543 3699999998765 45555544 368888776543
No 62
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=52.67 E-value=15 Score=26.90 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=26.8
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc---------CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM---------KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l---------giP~i~~~~~ 49 (285)
+++++.+.. .+||+||.|..++ -+..+++.+ .+|.++++..
T Consensus 48 ~~al~~~~~---~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 48 EQVLDAMAE---EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHHHHH---SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 455555544 3699999998765 456665554 2788877654
No 63
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=51.94 E-value=16 Score=32.44 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=20.2
Q ss_pred CccEEEe--CCcchh-HHHHHHHcCCceEEEe
Q 042918 19 KISCVIA--DGAMGW-AMVAAEEMKIRRAAYL 47 (285)
Q Consensus 19 ~~d~vI~--D~~~~~-~~~~A~~lgiP~i~~~ 47 (285)
+||+|++ |....+ +...|+.+|||.+.+.
T Consensus 111 kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ 142 (396)
T 3dzc_A 111 QPDVVLVHGDTATTFAASLAAYYQQIPVGHVE 142 (396)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHTTTCCEEEET
T ss_pred CCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 6998866 434433 3567889999987653
No 64
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=47.42 E-value=22 Score=31.68 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=20.3
Q ss_pred CccEEEe--CCcchh-HHHHHHHcCCceEEEe
Q 042918 19 KISCVIA--DGAMGW-AMVAAEEMKIRRAAYL 47 (285)
Q Consensus 19 ~~d~vI~--D~~~~~-~~~~A~~lgiP~i~~~ 47 (285)
+||+|++ |....+ +..+|+.+|||.+.+.
T Consensus 114 kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ 145 (403)
T 3ot5_A 114 NPDIVLVHGDTTTSFAAGLATFYQQKMLGHVE 145 (403)
T ss_dssp CCSEEEEETTCHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 6998865 333333 4678899999987654
No 65
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=43.90 E-value=41 Score=23.66 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
.+.++.+... .+||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 40 ~~a~~~~~~~--~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 40 VEAWEKLDAN--ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp HHHHHHHHHC--TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred HHHHHHHHhC--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 3444444332 2699999998775 455555543 47888776543
No 66
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=43.36 E-value=39 Score=23.53 Aligned_cols=42 Identities=10% Similarity=0.066 Sum_probs=26.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.++++.+.. .+||++|.|..++ -+..+.+.+ ++|.++++...
T Consensus 37 ~~~~~~~~~---~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 37 EAFLAFAPD---VRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp HHHHHHGGG---CCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred HHHHHHHhc---CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 455555543 3699999997764 345554443 57888776543
No 67
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=41.68 E-value=36 Score=24.31 Aligned_cols=41 Identities=24% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~ 49 (285)
.+.++.+.. .+||+||.|..++ -+..+.+.+ .+|.++++..
T Consensus 37 ~~al~~l~~---~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 37 EECLEALNA---TPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHHH---SCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 444554443 3699999997764 355554443 5788777654
No 68
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=40.53 E-value=42 Score=23.54 Aligned_cols=42 Identities=10% Similarity=-0.065 Sum_probs=25.5
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH-------cCCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEE-------MKIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~-------lgiP~i~~~~~ 49 (285)
..++++.+.+ .+||+||.|..++ -+..+.+. -++|.++++..
T Consensus 36 ~~~a~~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 36 GASGLQQALA---HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHHHH---SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 3455555554 3699999997654 34444332 16788777654
No 69
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=39.69 E-value=54 Score=22.22 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
.+.++.+.. .+||++|.|..++ .+..+.+.+ ++|.+.++..
T Consensus 35 ~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 35 EEALKKFFS---GNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHH---SCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhc---CCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 445555443 3699999997664 344444433 4777776543
No 70
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.41 E-value=38 Score=24.13 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=25.6
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~ 49 (285)
.+++++.+.. .+||+||.|..++ -+..+.+.+ ++|.++++..
T Consensus 39 ~~~a~~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 39 AAQALEQVAR---RPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHH---SCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHHh---CCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecC
Confidence 3455555544 3699999997654 344444432 5677766543
No 71
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=38.72 E-value=25 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=25.4
Q ss_pred CccEE-EeCCcc-hhHHHHHHHcCCceEEEecch
Q 042918 19 KISCV-IADGAM-GWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~v-I~D~~~-~~~~~~A~~lgiP~i~~~~~~ 50 (285)
.||+| |+|..- ..+..-|.++|||+|.+.-+.
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn 191 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADTD 191 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTT
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 58865 788754 578889999999999987543
No 72
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=38.54 E-value=40 Score=23.12 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
++.++.+.. .+||+||.|..++ .+..+++.+ ++|.+.++...
T Consensus 37 ~~a~~~~~~---~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 37 REAVEKYKE---LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHHHHHHHH---HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHHHHHHh---cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 444554443 2599999998765 355555443 57887776543
No 73
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=38.18 E-value=40 Score=24.46 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.+++++.+.. .+||+||.|..++ .+..+++.+ ++|.++++...
T Consensus 55 ~~~al~~l~~---~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 55 GQEAIQLLEK---ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHHHTT---SCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHhhc---cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 4566666654 3699999997653 345554433 57877776543
No 74
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=38.00 E-value=18 Score=35.06 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=28.9
Q ss_pred eecChhh---------hcccCccceEEe-cCCc-hhHHHhHhcCceeEeccc
Q 042918 187 GCTPQQK---------FLSHPSIACFLR-HCGW-NPTTEGVSNGLAFLCWPY 227 (285)
Q Consensus 187 ~w~PQ~~---------iL~h~~v~~fit-HgG~-nS~~Ea~~~GvP~v~~P~ 227 (285)
.|++..+ +++...+-.|=+ +=|+ .+.+||+++|+|+|+--.
T Consensus 499 ~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~ 550 (725)
T 3nb0_A 499 EFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNV 550 (725)
T ss_dssp SCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETT
T ss_pred cccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCC
Confidence 7888754 566666644433 2233 689999999999998654
No 75
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=37.37 E-value=46 Score=23.27 Aligned_cols=43 Identities=16% Similarity=0.028 Sum_probs=24.8
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.+++++.+.+ .+||+||.|..++ -+..+.+.+ ++|.++++...
T Consensus 40 ~~~a~~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 40 GVDALELLGG---FTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHHHHTT---CCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHHHHhc---CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 3455665543 3699999997654 233443332 57888776544
No 76
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=37.31 E-value=44 Score=23.83 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
..++++.+.. .+||+||.|. ++ .+..+.+.+ ++|.++++...
T Consensus 37 ~~~a~~~l~~---~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 37 EQEAFTFLRR---EKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHHHHHHTT---SCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHHHhc---cCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 3455666544 3699999998 64 344444433 58888776543
No 77
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=37.22 E-value=32 Score=26.32 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.+++++.+.. .+||+||.|..++ -+..+++.+ ++|.++++...
T Consensus 40 ~~~al~~~~~---~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 40 KDEALKLAGA---EKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHHHHHHTT---SCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHHhh---CCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 3455565543 3699999998765 344444433 57888776544
No 78
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=36.89 E-value=42 Score=23.76 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=26.1
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch-------hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG-------WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~-------~~~~~A~~l-----giP~i~~~~~~ 50 (285)
..++++.+.. .+||+||.|..++ .+..+.+.+ ++|.++++...
T Consensus 36 ~~~a~~~l~~---~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 36 PVSLSTVLRE---ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYA 90 (140)
T ss_dssp HHHHHHHHHH---SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGG
T ss_pred HHHHHHHHHc---CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCC
Confidence 3455555544 3699999997654 334443332 68888776543
No 79
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=36.85 E-value=47 Score=23.67 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=26.7
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l----giP~i~~~~~~ 50 (285)
.++++.+.. .+||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 38 ~~al~~~~~---~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 38 EEAIGKIFS---NKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHHHHH---CCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 445555543 3699999998765 355555544 57888776543
No 80
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=36.75 E-value=40 Score=23.88 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.++++.+.. .+||+||.|..++ -+..+.+.+ ++|.++++...
T Consensus 39 ~~al~~~~~---~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 39 LDAMKLIEE---YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHHHHHH---HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHhh---cCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCC
Confidence 445554443 2599999998764 345554443 57887776543
No 81
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=36.73 E-value=36 Score=24.82 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=26.6
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
..++++.+.. .+||+||.|..++ .+..+.+.+ ++|.++++...
T Consensus 47 ~~~a~~~l~~---~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 47 ATQALQLLAS---REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHHHHH---SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHHHHHc---CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 3455665554 3699999997654 344444433 57877766543
No 82
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=36.42 E-value=45 Score=28.22 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHcCCceEEEec
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i~~~~ 48 (285)
..+.++++.++.. ++.||+++..+. .+..+|++.|++.+.+.+
T Consensus 215 ~~l~~l~~~ik~~---~v~~if~e~~~~~~~~~~la~~~g~~v~~l~p 259 (286)
T 3gi1_A 215 RQLKEIQDFVKEY---NVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSP 259 (286)
T ss_dssp HHHHHHHHHHHHT---TCCEEEECTTSCTHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHHHc---CCCEEEEeCCCChHHHHHHHHHhCCeEEEecc
Confidence 4677888887763 699999997654 678899999999987654
No 83
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=36.35 E-value=43 Score=28.71 Aligned_cols=29 Identities=17% Similarity=-0.027 Sum_probs=20.4
Q ss_pred CccEEEe--CCcchh-HHHHHHHcCCceEEEe
Q 042918 19 KISCVIA--DGAMGW-AMVAAEEMKIRRAAYL 47 (285)
Q Consensus 19 ~~d~vI~--D~~~~~-~~~~A~~lgiP~i~~~ 47 (285)
+||+|++ +....+ +..+|+.+|||.+.+.
T Consensus 91 ~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~ 122 (376)
T 1v4v_A 91 GADYVLVHGDTLTTFAVAWAAFLEGIPVGHVE 122 (376)
T ss_dssp TCSEEEEESSCHHHHHHHHHHHHTTCCEEEET
T ss_pred CCCEEEEeCChHHHHHHHHHHHHhCCCEEEEe
Confidence 6999988 333333 4567889999987643
No 84
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=36.33 E-value=25 Score=29.04 Aligned_cols=31 Identities=16% Similarity=0.039 Sum_probs=24.7
Q ss_pred CccEE-EeCCcc-hhHHHHHHHcCCceEEEecc
Q 042918 19 KISCV-IADGAM-GWAMVAAEEMKIRRAAYLAC 49 (285)
Q Consensus 19 ~~d~v-I~D~~~-~~~~~~A~~lgiP~i~~~~~ 49 (285)
.||+| |+|..- .-+..-|.++|||+|++.-+
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDT 189 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDT 189 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecC
Confidence 48875 678754 57888899999999998744
No 85
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=36.31 E-value=47 Score=28.12 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHcCCceEEEecchH
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEMKIRRAAYLACSS 51 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i~~~~~~~ 51 (285)
..+.++++.++.. ++.||+++..+. .+..+|++.|++.+.+.+.+.
T Consensus 224 ~~l~~l~~~ik~~---~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~l~~ 271 (291)
T 1pq4_A 224 QELKQLIDTAKEN---NLTMVFGETQFSTKSSEAIAAEIGAGVELLDPLAA 271 (291)
T ss_dssp HHHHHHHHHHHTT---TCCEEEEETTSCCHHHHHHHHHHTCEEEEECTTCS
T ss_pred HHHHHHHHHHHHc---CCCEEEEeCCCChHHHHHHHHHcCCeEEEEcCchh
Confidence 4677888887753 699999997664 688899999999988766543
No 86
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=36.16 E-value=40 Score=24.55 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=26.7
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
..++++.+.. .+||+||.|..++ -+..+.+.+ ++|.++++...
T Consensus 40 ~~~a~~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 40 PLDALEALKG---TSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp HHHHHHHHTT---SCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGG
T ss_pred HHHHHHHHhc---CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCC
Confidence 3455665544 3699999997654 344444433 67888776544
No 87
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=35.70 E-value=49 Score=22.54 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH----cCCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEE----MKIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~----lgiP~i~~~~~~ 50 (285)
.+.++.+.. .+||++|.|..++ .+..+++. -.+|.+.++...
T Consensus 35 ~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 35 REALEQFEA---EQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHHHHHH---HCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred HHHHHHHHh---CCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 344444433 2599999997664 34444443 368888776544
No 88
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=35.30 E-value=57 Score=22.93 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.++++.+.. .+||+||.|..++ -+..+.+.+ ++|.++++...
T Consensus 37 ~~al~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 37 GEGLAKIEN---EFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHHHHHH---SCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred HHHHHHHhc---CCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccc
Confidence 445555543 3699999997664 344444433 57887776543
No 89
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=34.82 E-value=62 Score=22.21 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=25.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l----giP~i~~~~~~ 50 (285)
.+.++.+.. .+||++|.|..++ -+..+++.+ ++|.+.++...
T Consensus 37 ~~a~~~~~~---~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 37 AEMHQILSE---YDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHHHHHHH---SCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HHHHHHHhc---CCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 344544443 3699999997664 344444443 67777766543
No 90
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=34.61 E-value=47 Score=23.83 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=24.4
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEec
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLA 48 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~ 48 (285)
.++++.+.. .+||+||.|..++ .+..+++.+ ++|.++++.
T Consensus 39 ~~al~~~~~---~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~ 85 (141)
T 3cu5_A 39 INAIQIALK---HPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSG 85 (141)
T ss_dssp HHHHHHHTT---SCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECC
T ss_pred HHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeC
Confidence 455555543 3699999997664 355554443 467776654
No 91
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=33.79 E-value=44 Score=23.15 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=25.5
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.++++.+.. .+||++|.|..++ .+..+++.+ ++|.++++...
T Consensus 37 ~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 37 LQALDIVTK---ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHHHHHH---HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHhc---cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 344444433 2599999997664 344554443 57887776543
No 92
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=33.79 E-value=62 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.111 Sum_probs=21.8
Q ss_pred CccEEEeCCcc--hhHHHHHHHcCCceEEEe
Q 042918 19 KISCVIADGAM--GWAMVAAEEMKIRRAAYL 47 (285)
Q Consensus 19 ~~d~vI~D~~~--~~~~~~A~~lgiP~i~~~ 47 (285)
+||+|+++... ..+..+++.+|+|+++..
T Consensus 96 ~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 126 (364)
T 1f0k_A 96 KPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 126 (364)
T ss_dssp CCSEEEECSSTTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEeCCcCchHHHHHHHHcCCCEEEEe
Confidence 69999998643 345667888999998644
No 93
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=33.52 E-value=43 Score=27.61 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhcCCCCccEEEeCCcc---------hhHHHHHHHcCCceEEEecchH
Q 042918 4 KLEELIEEINRQEDEKISCVIADGAM---------GWAMVAAEEMKIRRAAYLACSS 51 (285)
Q Consensus 4 ~~~~ll~~l~~~~~~~~d~vI~D~~~---------~~~~~~A~~lgiP~i~~~~~~~ 51 (285)
.+.+.++++.+ ++|++|+|... ....++|+.++.|.+.......
T Consensus 120 ~I~~~~~~l~~----~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~l 172 (242)
T 3qxc_A 120 NLTQRLHNFTK----TYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNL 172 (242)
T ss_dssp HHHHHHHHGGG----TCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCST
T ss_pred HHHHHHHHHHh----cCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCC
Confidence 45555566543 59999999632 2457899999999988776543
No 94
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=33.33 E-value=73 Score=21.68 Aligned_cols=42 Identities=12% Similarity=-0.035 Sum_probs=25.5
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
+++++.+.. .+||++|.|..++ -+..+.+.+ .+|.++++...
T Consensus 34 ~~a~~~~~~---~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 34 KEADYYLNE---HIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHHHHHH---SCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHHHHHhc---cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 344554443 3699999997664 344444433 57888776543
No 95
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=33.11 E-value=54 Score=22.77 Aligned_cols=42 Identities=17% Similarity=-0.002 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~ 49 (285)
.+++++.+.. .+||+||.|..++ -+..+++.+ ++|.++++..
T Consensus 40 ~~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 40 GEQGMKIMAQ---NPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHHHHHHT---SCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHHHHHHc---CCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 3455555543 3699999997764 455666554 3566665543
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=32.93 E-value=58 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=24.3
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch---hHHHHHHHc-----CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG---WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~---~~~~~A~~l-----giP~i~~~~~ 49 (285)
.++++.+... .+||+||.|..++ .+..+++.+ ++|.++++..
T Consensus 39 ~~a~~~l~~~--~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 39 AKAIEMLKSG--AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHHHHHHHTT--CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESS
T ss_pred HHHHHHHHcC--CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4455555432 1599999996553 244444433 5788776654
No 97
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=32.64 E-value=67 Score=25.96 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=33.1
Q ss_pred hHHHHHHHHhhhcC-CCCccEEEeCCcchhHHHHHHHcCCceEEEec
Q 042918 3 GKLEELIEEINRQE-DEKISCVIADGAMGWAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 3 ~~~~~ll~~l~~~~-~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 48 (285)
..|+++++...+.. +..+.+||+|---......|+++|||+..+.+
T Consensus 14 snl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~ 60 (211)
T 3p9x_A 14 TNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDP 60 (211)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCG
T ss_pred hHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeCh
Confidence 46888888765321 02467899996555678899999999987654
No 98
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=32.61 E-value=60 Score=22.22 Aligned_cols=32 Identities=6% Similarity=0.084 Sum_probs=21.5
Q ss_pred CccEEEeCCcch--hHHHHHHHc----CCceEEEecch
Q 042918 19 KISCVIADGAMG--WAMVAAEEM----KIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l----giP~i~~~~~~ 50 (285)
+||++|.|..++ -+..+++.+ .+|.++++...
T Consensus 46 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 46 SVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 699999997664 355555554 57777766543
No 99
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=32.47 E-value=73 Score=22.45 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=20.9
Q ss_pred CccEEEeCCcch--hHHHHHHHc------CCceEEEecch
Q 042918 19 KISCVIADGAMG--WAMVAAEEM------KIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l------giP~i~~~~~~ 50 (285)
+||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 52 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCC
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCC
Confidence 599999998775 344444332 46777766543
No 100
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=32.35 E-value=57 Score=23.13 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=25.3
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
.++++.+.. .+||+||.|..++ .+..+.+.+ .+|.++++..
T Consensus 34 ~~a~~~~~~---~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (139)
T 2jk1_A 34 EAAIAILEE---EWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGY 81 (139)
T ss_dssp HHHHHHHHH---SCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHhc---CCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCC
Confidence 445555544 3699999998764 345554443 4677776654
No 101
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=32.05 E-value=57 Score=27.38 Aligned_cols=41 Identities=22% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch-h--HHHHHH----HcCCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG-W--AMVAAE----EMKIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~-~--~~~~A~----~lgiP~i~~~~~ 49 (285)
++.++.+.. .+||+||.|..++ . +..+++ .-++|.|+++..
T Consensus 195 ~eAl~~~~~---~~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 195 GEALEAVTR---RTPGLVLADIQLADGSSGIDAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp HHHHHHHHH---CCCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHh---CCCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEEEEeCC
Confidence 455565554 3699999998887 2 333322 228999887764
No 102
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=31.82 E-value=53 Score=22.80 Aligned_cols=42 Identities=7% Similarity=0.043 Sum_probs=25.1
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH-------cCCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEE-------MKIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~-------lgiP~i~~~~~ 49 (285)
.+++++.+.+ .+||+||.|..++ -+..+++. -++|.++++..
T Consensus 36 ~~~a~~~l~~---~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 36 GTDALHAMST---RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHHHHH---SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 3455555544 3699999997653 34444433 34677766643
No 103
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.76 E-value=47 Score=22.88 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=19.4
Q ss_pred CccEEEeCCcch--hHHHHHHHc-------CCceEEEec
Q 042918 19 KISCVIADGAMG--WAMVAAEEM-------KIRRAAYLA 48 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~ 48 (285)
+||++|.|..++ -+..+++.+ .+|.+.++.
T Consensus 45 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 45 KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEEC
Confidence 599999998764 345554433 567776654
No 104
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=31.71 E-value=67 Score=22.20 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
.++++.+.. .+||++|.|..++ -+..+.+.+ .+|.++++...
T Consensus 39 ~~a~~~~~~---~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~ 89 (128)
T 1jbe_A 39 VDALNKLQA---GGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEA 89 (128)
T ss_dssp HHHHHHHTT---CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSC
T ss_pred HHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCc
Confidence 455555543 3699999998764 455555544 46777766543
No 105
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=31.61 E-value=55 Score=29.76 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhcCCCCccEEEeCCcchhHHHHHHHcCCceEEE
Q 042918 4 KLEELIEEINRQEDEKISCVIADGAMGWAMVAAEEMKIRRAAY 46 (285)
Q Consensus 4 ~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~ 46 (285)
++++++++. ++|++|.... ...+|+++|||++-+
T Consensus 366 ~le~~i~~~------~pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARAG------QAQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHH------TCSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred HHHHHHHhc------CCCEEEEChh---HHHHHHHcCCCEEEe
Confidence 355555554 6999999854 678999999998854
No 106
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=31.10 E-value=66 Score=26.01 Aligned_cols=43 Identities=5% Similarity=-0.054 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l----giP~i~~~~~~ 50 (285)
..++++.+.. .+||+||.|..++ -+..+++.+ .+|.++++...
T Consensus 70 ~~~al~~~~~---~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 70 AMNGLIKARE---DHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHHH---SCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHHHhc---CCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 3455555544 3699999998775 455555544 57888776544
No 107
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=31.03 E-value=51 Score=25.44 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=25.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
.++++.+.. .+||+||.|..++ .+..+++.+ ++|.++++..
T Consensus 38 ~~al~~~~~---~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 38 STFLEHRRP---EQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HHHHHHCCT---TSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHhhhc---cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 444554433 3699999998765 455555443 5788876653
No 108
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=30.81 E-value=69 Score=22.27 Aligned_cols=42 Identities=5% Similarity=-0.110 Sum_probs=24.4
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc------CCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM------KIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l------giP~i~~~~~ 49 (285)
..++++.+.. .+||+||.|..++ -+..+.+.+ ..|.+++.+.
T Consensus 39 ~~~a~~~l~~---~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 39 GFDAGIKLST---FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHHHHHHHH---TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred HHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 3455555544 3699999998764 355555443 2455555543
No 109
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=29.81 E-value=77 Score=22.87 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=26.5
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
..++++.+.. .+||+||.|..++ -+..+.+.+ ++|.++++...
T Consensus 40 ~~~a~~~l~~---~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 40 AGEAYRLYRE---TTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHHHHHHT---TCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHHhc---CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 4455665544 3699999997654 344444332 57888776543
No 110
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=28.89 E-value=56 Score=28.00 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHcCCceEEEecc
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEMKIRRAAYLAC 49 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i~~~~~ 49 (285)
..+.++++.++.. ++.||+++..+. .+..+|++.|++.+.+.+.
T Consensus 226 ~~l~~l~~~ik~~---~v~~If~e~~~~~~~~~~ia~e~g~~v~~l~~l 271 (312)
T 2o1e_A 226 ASLAKLKTYAKEH---NVKVIYFEEIASSKVADTLASEIGAKTEVLNTL 271 (312)
T ss_dssp HHHHHHHHHTTSS---CCCEEECSSCCCHHHHHHHHHHTCCEEECCCCT
T ss_pred HHHHHHHHHHHHc---CCCEEEEeCCCChHHHHHHHHHhCCcEEEeccc
Confidence 4678888888653 699999997764 6888999999998876543
No 111
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=28.63 E-value=51 Score=26.69 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=24.8
Q ss_pred CccE-EEeCCcc-hhHHHHHHHcCCceEEEecc
Q 042918 19 KISC-VIADGAM-GWAMVAAEEMKIRRAAYLAC 49 (285)
Q Consensus 19 ~~d~-vI~D~~~-~~~~~~A~~lgiP~i~~~~~ 49 (285)
.||+ +|+|.-- ..+..-|.++|||+|.++-+
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDT 147 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDS 147 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECT
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCC
Confidence 4786 5788754 57888999999999998754
No 112
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=28.58 E-value=51 Score=27.74 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=34.2
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHcCCceEEEec
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i~~~~ 48 (285)
..+.++++.++.. ++.||+++..+. .+..+|++.|++.+.+.+
T Consensus 213 ~~l~~l~~~ik~~---~v~~if~e~~~~~~~~~~ia~~~g~~v~~l~~ 257 (284)
T 3cx3_A 213 RQLTEIQEFVKTY---KVKTIFTESNASSKVAETLVKSTGVGLKTLNP 257 (284)
T ss_dssp HHHHHHHHHHHHT---TCCCEEECSSSCCHHHHHHHSSSSCCEEECCC
T ss_pred HHHHHHHHHHHHc---CCCEEEEeCCCCcHHHHHHHHHcCCeEEEecC
Confidence 4677888887763 599999997664 688899999999987654
No 113
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.50 E-value=58 Score=23.86 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=25.9
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
..++++.+.+.. .+||+||.|..++ -+..+.+.+ ++|.++++..
T Consensus 70 ~~~al~~l~~~~-~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 70 GEEAVIKYKNHY-PNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHHHHG-GGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHHhcC-CCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEecc
Confidence 345555554321 1589999997654 344444433 5788777654
No 114
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=27.92 E-value=89 Score=22.07 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=17.1
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEE 38 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~ 38 (285)
+++++.+.. .+||+||.|..++ .+..+++.
T Consensus 44 ~~al~~l~~---~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 44 LQALQAYQN---RQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHHHHHHH---SCCSEEEECTTCCSSCHHHHHHH
T ss_pred HHHHHHHhc---CCCCEEEEeCCCCCCcHHHHHHH
Confidence 444554443 2589999987654 34444443
No 115
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=27.74 E-value=75 Score=24.76 Aligned_cols=42 Identities=21% Similarity=0.017 Sum_probs=25.8
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.++++.+.. .+||+||.|..++ .+..+++.+ ++|.++++...
T Consensus 36 ~~a~~~~~~---~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 36 EEGMYMALN---EPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp HHHHHHHHH---SCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred HHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 444554443 3699999997664 344444433 67888776544
No 116
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=27.52 E-value=65 Score=21.91 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=21.8
Q ss_pred CccEEEeCCcch--hHHHHHHHc----CCceEEEecch
Q 042918 19 KISCVIADGAMG--WAMVAAEEM----KIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l----giP~i~~~~~~ 50 (285)
+||++|.|..++ .+..+++.+ .+|.+.++...
T Consensus 45 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 45 KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 599999998764 355555544 57777776544
No 117
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=27.47 E-value=1e+02 Score=21.73 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=24.8
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch---hHHHHHHH----cCCceEEEec
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG---WAMVAAEE----MKIRRAAYLA 48 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~---~~~~~A~~----lgiP~i~~~~ 48 (285)
..++++.+.+. .+||+||.|..++ .+..+++. -++|.++++.
T Consensus 38 ~~~a~~~l~~~--~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~ 86 (140)
T 3h5i_A 38 GEAAVEKVSGG--WYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTA 86 (140)
T ss_dssp HHHHHHHHHTT--CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEES
T ss_pred hHHHHHHHhcC--CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEEC
Confidence 34555555432 2699999997653 34444433 3678777664
No 118
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=27.16 E-value=19 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=23.9
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcc---hhHHHHHHHc----CCceEEEe
Q 042918 5 LEELIEEINRQEDEKISCVIADGAM---GWAMVAAEEM----KIRRAAYL 47 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~---~~~~~~A~~l----giP~i~~~ 47 (285)
+.++++++. .+||++++|..- +-...+|.++ ++|+|...
T Consensus 93 ~l~al~~L~----~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVA 138 (225)
T 2w36_A 93 FLKAWEKLR----TKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVA 138 (225)
T ss_dssp HHHHHTTCC----SCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHhcC----CCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEE
Confidence 334455554 369999999653 2244444444 78888754
No 119
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=27.08 E-value=47 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=21.9
Q ss_pred CccEEEeCCcch--hHHHHHHH---------cCCceEEEecch
Q 042918 19 KISCVIADGAMG--WAMVAAEE---------MKIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~---------lgiP~i~~~~~~ 50 (285)
+||+||.|..++ -+..+++. ..+|.++++...
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 699999998765 34444433 457888877643
No 120
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=26.98 E-value=71 Score=25.07 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEec
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLA 48 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~ 48 (285)
.++++.+.. .+||+||.|..++ .+..+++.+ ++|.++++.
T Consensus 41 ~~a~~~~~~---~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 41 AEALRSATE---NRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp HHHHHHHHH---SCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 444554443 3589999997664 344444433 577776654
No 121
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=26.76 E-value=49 Score=23.50 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=22.6
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH-------cCCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEE-------MKIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~-------lgiP~i~~~~~ 49 (285)
..++++.+.+. +||+||.|..++ -+..+++. -++|.++++..
T Consensus 35 ~~~a~~~~~~~---~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 35 EKEALEQIDHH---HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHH---CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHHhcC---CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 34555555442 599999997654 23333332 35777766543
No 122
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=26.64 E-value=56 Score=27.29 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=24.9
Q ss_pred CccEE-EeCCcc-hhHHHHHHHcCCceEEEecc
Q 042918 19 KISCV-IADGAM-GWAMVAAEEMKIRRAAYLAC 49 (285)
Q Consensus 19 ~~d~v-I~D~~~-~~~~~~A~~lgiP~i~~~~~ 49 (285)
.||+| |+|... ..+..-|.++|||+|.++-+
T Consensus 151 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDT 183 (253)
T 3bch_A 151 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNT 183 (253)
T ss_dssp SCSEEEESCTTTTHHHHHHHHHTTCCEEEEECT
T ss_pred CCCEEEEECCCccchHHHHHHHhCCCEEEEEcC
Confidence 58865 678755 57888999999999998754
No 123
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=26.63 E-value=89 Score=25.28 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=32.3
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcchhHHHHHHHcCCceEEEec
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMGWAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 48 (285)
..++++++...+.-+..+.+||+|.--..+...|+++|||+..+..
T Consensus 17 snl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~ 62 (215)
T 3tqr_A 17 TNLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIPTHIIPH 62 (215)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 4678888876532002467889986555677889999999987643
No 124
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=26.35 E-value=64 Score=25.94 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=26.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
+++++.+.. .+||+||.|..++ -+..+++.+ ++|.++++...
T Consensus 57 ~~al~~~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 57 AQALDRARE---TRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp HHHHHHHHH---HCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECST
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 445555543 2699999998765 355555443 57888776544
No 125
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=26.27 E-value=56 Score=28.56 Aligned_cols=41 Identities=12% Similarity=0.025 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
++.++.+.. .+||+||.|..++ -+..+++++ .+|.|+++..
T Consensus 39 ~~al~~~~~---~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~lt~~ 86 (394)
T 3eq2_A 39 LQGLQIFES---EQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVLSGA 86 (394)
T ss_dssp HHHHHHHHH---SCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---
T ss_pred HHHHHHHhh---CCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEEEcC
Confidence 455555544 3699999998876 355665554 5888876654
No 126
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=26.08 E-value=81 Score=25.40 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=31.8
Q ss_pred hHHHHHHHHhhhcC-CCCccEEEeCCcchhHHHHHHHcCCceEEEec
Q 042918 3 GKLEELIEEINRQE-DEKISCVIADGAMGWAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 3 ~~~~~ll~~l~~~~-~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 48 (285)
..++.+++.+.+.. +..+.+||+|.--..+...|+++|||+..+..
T Consensus 19 snl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~~ 65 (209)
T 4ds3_A 19 SNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFKR 65 (209)
T ss_dssp HHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeCc
Confidence 46788888875421 01356789985444567899999999987643
No 127
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=25.99 E-value=2.3e+02 Score=24.01 Aligned_cols=67 Identities=10% Similarity=-0.047 Sum_probs=40.8
Q ss_pred ceEEecCCch----h---------HHHhHhcCceeEeccccccc----------------hhhHHHHHHHhcc-eEEeec
Q 042918 201 ACFLRHCGWN----P---------TTEGVSNGLAFLCWPYFAEQ----------------FLNESYICAIRKV-GQRFNK 250 (285)
Q Consensus 201 ~~fitHgG~n----S---------~~Ea~~~GvP~v~~P~~~DQ----------------~~na~~~~~~~gv-G~~l~~ 250 (285)
...++|||.. . ++....+|+|++..|-+.=| +.-++..+. +|+ |+.+.+
T Consensus 164 ~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA-~GA~gl~IE~ 242 (285)
T 3sz8_A 164 RVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIA-VGIAGLFLEA 242 (285)
T ss_dssp CEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHH-HCCSEEEEEE
T ss_pred cEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHH-hCCCEEEEEe
Confidence 3478888752 1 33444558999998888733 334555555 687 555543
Q ss_pred --C-------CCCCccHHHHHHHHHHH
Q 042918 251 --T-------KMGSSQGKKLTTRWIKC 268 (285)
Q Consensus 251 --~-------~~~~~~~~~l~~ai~~~ 268 (285)
+ ..-.++.+++++-+++.
T Consensus 243 H~~pd~al~D~~~sl~p~el~~lv~~i 269 (285)
T 3sz8_A 243 HPDPDRARCDGPSALPLHQLEGLLSQM 269 (285)
T ss_dssp ESCGGGCSCSSCCCEEGGGHHHHHHHH
T ss_pred ccChhccCCchhhccCHHHHHHHHHHH
Confidence 1 11247778888777764
No 128
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=25.90 E-value=78 Score=22.30 Aligned_cols=39 Identities=3% Similarity=-0.011 Sum_probs=23.9
Q ss_pred HHHHHHhhh-cCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEe
Q 042918 6 EELIEEINR-QEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYL 47 (285)
Q Consensus 6 ~~ll~~l~~-~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~ 47 (285)
.++++.+.. . +||++|.|..++ .+..+.+.+ ++|.++++
T Consensus 49 ~~al~~l~~~~---~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 49 SAFFQHRSQLS---TCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHTGGGGG---SCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHhCC---CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 344544433 2 589999997664 455555554 46777665
No 129
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=25.90 E-value=72 Score=27.03 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=31.7
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHcCCceE
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEMKIRRA 44 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i 44 (285)
..+.++++.++.. ++.||+++..+. .+..+|++.|++.+
T Consensus 219 ~~l~~l~~~ik~~---~v~~if~e~~~~~~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 219 DQISSLIEKLKVI---KPSALFVESSVDRRPMETVSKDSGIPIY 259 (294)
T ss_dssp HHHHHHHHHHHHS---CCSCEEEETTSCSHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHc---CCCEEEEeCCCCcHHHHHHHHHhCCcEE
Confidence 4677888887763 599999997664 67899999999998
No 130
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=25.63 E-value=93 Score=21.97 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=20.6
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM 39 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l 39 (285)
..++++.+.. .+||+||.|..++ .+..+++.+
T Consensus 44 ~~~al~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 44 GLDVLKFLQH---NKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHHHHHH---CCCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCEEEEecCCCCCCHHHHHHHH
Confidence 3455555544 3699999997664 456666665
No 131
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=25.57 E-value=62 Score=27.21 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHcCCceEEEecc
Q 042918 3 GKLEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEMKIRRAAYLAC 49 (285)
Q Consensus 3 ~~~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~lgiP~i~~~~~ 49 (285)
..+.++++.++.. ++.||+++..+. .+..+|++.|++.+.+.+.
T Consensus 210 ~~l~~l~~~ik~~---~v~~if~e~~~~~~~~~~ia~~~g~~v~~ld~l 255 (284)
T 2prs_A 210 QRLHEIRTQLVEQ---KATCVFAEPQFRPAVVESVARGTSVRMGTLDPL 255 (284)
T ss_dssp HHHHHHHHHHHHT---TCCEEEECTTSCSHHHHHHTTTSCCEEEECCTT
T ss_pred HHHHHHHHHHHHc---CCCEEEEeCCCChHHHHHHHHHcCCeEEEeccC
Confidence 4677888877763 699999997663 6888999999998876443
No 132
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.56 E-value=57 Score=26.24 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=24.7
Q ss_pred CccE-EEeCCcc-hhHHHHHHHcCCceEEEecc
Q 042918 19 KISC-VIADGAM-GWAMVAAEEMKIRRAAYLAC 49 (285)
Q Consensus 19 ~~d~-vI~D~~~-~~~~~~A~~lgiP~i~~~~~ 49 (285)
.||+ +|+|.-. ..+..-|.++|||++.++-+
T Consensus 111 ~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DT 143 (202)
T 3j20_B 111 EPDVLIVTDPRADHQAMREAVEIGIPIVALVDT 143 (202)
T ss_dssp CCSEEEESCTTTSHHHHHHHHHHTCCEEEEECT
T ss_pred CCCeEEEeCCccchHHHHHHHHcCCCEEEEEcC
Confidence 4776 5788755 57888899999999998844
No 133
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=25.05 E-value=1e+02 Score=24.79 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhcC-CCCccEEEeCCcchhHHHHHHHcCCceEEEec
Q 042918 4 KLEELIEEINRQE-DEKISCVIADGAMGWAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 4 ~~~~ll~~l~~~~-~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~ 48 (285)
.++.|++...+.. +..+-+||++.--..+...|+++|||+..+.+
T Consensus 13 ~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~gIp~~~~~~ 58 (209)
T 1meo_A 13 NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINH 58 (209)
T ss_dssp THHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTTCCEEECCG
T ss_pred HHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcCCCEEEECc
Confidence 5778887764321 12456789987666788889999999987654
No 134
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=25.01 E-value=72 Score=26.35 Aligned_cols=40 Identities=8% Similarity=0.005 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhcCCCCccEEEeCCc---chh----HHHHHHHcCCceEEEe
Q 042918 4 KLEELIEEINRQEDEKISCVIADGA---MGW----AMVAAEEMKIRRAAYL 47 (285)
Q Consensus 4 ~~~~ll~~l~~~~~~~~d~vI~D~~---~~~----~~~~A~~lgiP~i~~~ 47 (285)
.+-++++++. .+||++++|.. .+- +.-+.-.+++|+|...
T Consensus 96 ~ll~al~~L~----~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 142 (237)
T 3goc_A 96 TVLAALDALP----CPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVA 142 (237)
T ss_dssp HHHHHHHTSS----SCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHhcC----CCCCEEEEeCceeecCCCcchhheeeeecCCCEEeee
Confidence 3456666665 36999999964 232 3333444567777754
No 135
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=24.96 E-value=66 Score=24.96 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=25.8
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
.++++.+.. .+||+||.|..++ .+..+++.+ .+|.++++...
T Consensus 41 ~~al~~~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~ 89 (215)
T 1a04_A 41 EQGIELAES---LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSN 89 (215)
T ss_dssp HHHHHHHHH---HCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCC
T ss_pred HHHHHHHHh---cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCC
Confidence 445554443 2599999998765 355555443 56777766543
No 136
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=24.48 E-value=93 Score=24.38 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhcCCCCccEEEeCCcc---------hhHHHHHHHcCCceEEEecch
Q 042918 4 KLEELIEEINRQEDEKISCVIADGAM---------GWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 4 ~~~~ll~~l~~~~~~~~d~vI~D~~~---------~~~~~~A~~lgiP~i~~~~~~ 50 (285)
.++++++++.. .+|+||+|.-- ....+++..++.|.+......
T Consensus 97 ~l~~~l~~l~~----~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~ 148 (224)
T 1byi_A 97 VMSAGLRALEQ----QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK 148 (224)
T ss_dssp HHHHHHHHHHT----TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS
T ss_pred HHHHHHHHHHH----hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC
Confidence 46677777753 59999999651 235788888888877665443
No 137
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=24.13 E-value=74 Score=26.30 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcc----------hhHHHHHHHcCCceEEEecch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAM----------GWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~----------~~~~~~A~~lgiP~i~~~~~~ 50 (285)
+.+.++++. .++|++|+|... ....++|+.++.|.+......
T Consensus 116 i~~~~~~l~----~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~ 167 (251)
T 3fgn_A 116 IVRLIADLD----RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTAD 167 (251)
T ss_dssp HHHHHHTTC----CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSS
T ss_pred HHHHHHHHH----hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCC
Confidence 444444443 369999999632 245789999999999877654
No 138
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.89 E-value=77 Score=22.37 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=14.3
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG 30 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~ 30 (285)
.+++++.+.. .+||+||.|..++
T Consensus 40 ~~~a~~~l~~---~~~dlii~d~~l~ 62 (142)
T 3cg4_A 40 GGQCIDLLKK---GFSGVVLLDIMMP 62 (142)
T ss_dssp HHHHHHHHHT---CCCEEEEEESCCS
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCC
Confidence 3455555543 3589999986553
No 139
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=23.70 E-value=90 Score=21.76 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=23.5
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
.++++.+.. .+||+||.|..++ -+..+++.+ .+|.++++..
T Consensus 37 ~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 37 EEALKKAET---EKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHHHHH---HCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHhh---cCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 344444433 2589999997654 344444433 5677766543
No 140
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=23.63 E-value=56 Score=25.85 Aligned_cols=41 Identities=7% Similarity=0.141 Sum_probs=25.6
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
.++++.+... +||+||.|..++ .+..+++.+ ++|.++++..
T Consensus 37 ~~al~~l~~~---~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 37 AEAMARVPAA---RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSY 84 (225)
T ss_dssp HHHHHHHHHH---CCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGS
T ss_pred HHHHHHHhhc---CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECC
Confidence 4455555432 599999998765 355554443 5777776544
No 141
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=23.60 E-value=71 Score=27.27 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=19.4
Q ss_pred CccEEEeCC--cchh-HHHHHHHcCCceEEEe
Q 042918 19 KISCVIADG--AMGW-AMVAAEEMKIRRAAYL 47 (285)
Q Consensus 19 ~~d~vI~D~--~~~~-~~~~A~~lgiP~i~~~ 47 (285)
+||+|++-. ...+ +..+|+.+|+|++...
T Consensus 86 ~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~ 117 (384)
T 1vgv_A 86 KPDVVLVHGDTTTTLATSLAAFYQRIPVGHVE 117 (384)
T ss_dssp CCSEEEEETTCHHHHHHHHHHHTTTCCEEEES
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEe
Confidence 699988732 3333 4456788899988654
No 142
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.60 E-value=1e+02 Score=20.47 Aligned_cols=41 Identities=2% Similarity=0.011 Sum_probs=23.5
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH-------cCCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEE-------MKIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~-------lgiP~i~~~~~ 49 (285)
+++++.+... +||++|.|..++ .+..+.+. -++|.++++..
T Consensus 35 ~~~~~~l~~~---~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 35 STALDQLDLL---QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHH---CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHhc---CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 4444444432 589999997553 23333332 35788776654
No 143
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=23.57 E-value=70 Score=22.82 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=21.2
Q ss_pred CccEEEeCCcch--hHHHHHHHc-----CCceEEEecch
Q 042918 19 KISCVIADGAMG--WAMVAAEEM-----KIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~~ 50 (285)
+||+||.|..++ -+..+++.+ ++|.++++...
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 599999998764 344444433 57887776543
No 144
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=23.50 E-value=65 Score=23.29 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=21.4
Q ss_pred HHHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-----CCceEEEecc
Q 042918 5 LEELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-----KIRRAAYLAC 49 (285)
Q Consensus 5 ~~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-----giP~i~~~~~ 49 (285)
..++++.+... .+||+||.|..++ .+..+.+.+ ++|.++++..
T Consensus 38 ~~~a~~~l~~~--~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 38 VSDALAFLEAD--NTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHHTT--CCCSEEEECC------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHHhcc--CCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 34555555431 2599999997654 233333332 5777766543
No 145
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=23.41 E-value=78 Score=24.80 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=26.1
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH----cCCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEE----MKIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~----lgiP~i~~~~~~ 50 (285)
.++++.+.. .+||+||.|..++ -+..+++. -++|.++++...
T Consensus 38 ~~al~~~~~---~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~ 85 (230)
T 2oqr_A 38 PAALAEFDR---AGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARD 85 (230)
T ss_dssp HHHHHHHHH---HCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCH
T ss_pred HHHHHHHhc---cCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCC
Confidence 444554443 2599999997664 34444443 368888776654
No 146
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.40 E-value=63 Score=27.65 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=25.2
Q ss_pred CccEE-EeCCcc-hhHHHHHHHcCCceEEEecch
Q 042918 19 KISCV-IADGAM-GWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~v-I~D~~~-~~~~~~A~~lgiP~i~~~~~~ 50 (285)
.||+| |+|... .-+..-|.++|||+|.++-+.
T Consensus 118 ~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn 151 (295)
T 2zkq_b 118 EPRLLVVTDPRADHQPLTEASYVNLPTIALCNTD 151 (295)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTT
T ss_pred CCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCC
Confidence 57865 678755 578888999999999987543
No 147
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=22.84 E-value=92 Score=28.61 Aligned_cols=25 Identities=12% Similarity=-0.101 Sum_probs=20.7
Q ss_pred CccEEEeCCcchhHHHHHHHcCCceEEE
Q 042918 19 KISCVIADGAMGWAMVAAEEMKIRRAAY 46 (285)
Q Consensus 19 ~~d~vI~D~~~~~~~~~A~~lgiP~i~~ 46 (285)
+||++|.. .....+|+++|||++-+
T Consensus 417 ~pDL~ig~---~~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 417 KPDLIGSG---IKEKFIFQKMGIPFREM 441 (492)
T ss_dssp CCSEEEEC---HHHHHHHHHTTCCEEES
T ss_pred CCcEEEeC---cchhHHHHHcCCCEEec
Confidence 69999996 45678999999999853
No 148
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=22.54 E-value=28 Score=27.69 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=16.3
Q ss_pred HHHHhcceEEeecCCCCCccHHHHHHHHHHH
Q 042918 238 ICAIRKVGQRFNKTKMGSSQGKKLTTRWIKC 268 (285)
Q Consensus 238 ~~~~~gvG~~l~~~~~~~~~~~~l~~ai~~~ 268 (285)
.++..|||+. +|+|+|+++|.+.
T Consensus 107 Fe~~cGVGV~--------VT~EqI~~~V~~~ 129 (187)
T 3tl4_X 107 MNENSGVGIE--------ITEDQVRNYVMQY 129 (187)
T ss_dssp HHHTTTTTCC--------CCHHHHHHHHHHH
T ss_pred HHHHCCCCeE--------eCHHHHHHHHHHH
Confidence 3344688875 5588888888874
No 149
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=22.29 E-value=2.4e+02 Score=21.80 Aligned_cols=28 Identities=4% Similarity=-0.155 Sum_probs=20.6
Q ss_pred eEEecCCchhHH---HhHhcCceeEeccccc
Q 042918 202 CFLRHCGWNPTT---EGVSNGLAFLCWPYFA 229 (285)
Q Consensus 202 ~fitHgG~nS~~---Ea~~~GvP~v~~P~~~ 229 (285)
..+--||.+++. |++.+++|++.+|.+.
T Consensus 111 ~IvlpGg~GTL~E~~~al~~~kpV~~l~~~~ 141 (176)
T 2iz6_A 111 LVAVGMGPGTAAEVALALKAKKPVVLLGTQP 141 (176)
T ss_dssp EEEESCCHHHHHHHHHHHHTTCCEEEESCCH
T ss_pred EEEecCCccHHHHHHHHHHhCCcEEEEcCcc
Confidence 345567777655 5567999999999843
No 150
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.15 E-value=1.1e+02 Score=21.53 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=21.2
Q ss_pred CccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 19 KISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
+||+||.|..++ .+..+.+.+ ++|.++++...
T Consensus 59 ~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 59 HPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp CCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 699999997664 455555543 46777766543
No 151
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=22.03 E-value=1.3e+02 Score=24.20 Aligned_cols=44 Identities=14% Similarity=0.305 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcC-CCCccEEEeCCcchhHHHHHHHcCCceEEEe
Q 042918 4 KLEELIEEINRQE-DEKISCVIADGAMGWAMVAAEEMKIRRAAYL 47 (285)
Q Consensus 4 ~~~~ll~~l~~~~-~~~~d~vI~D~~~~~~~~~A~~lgiP~i~~~ 47 (285)
.++.+++.+.+.. +..+.+||++.--..+...|+++|||+..+.
T Consensus 13 nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 13 NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLI 57 (212)
T ss_dssp HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcCCcEEEeC
Confidence 5788888775431 1235678998655667888999999998754
No 152
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.70 E-value=80 Score=27.47 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcCCCCccEEEeCCcch--h-----------------HHHHHHHcCCceEEEe
Q 042918 4 KLEELIEEINRQEDEKISCVIADGAMG--W-----------------AMVAAEEMKIRRAAYL 47 (285)
Q Consensus 4 ~~~~ll~~l~~~~~~~~d~vI~D~~~~--~-----------------~~~~A~~lgiP~i~~~ 47 (285)
.++..++++..+. ..+++||+|.+.. . ...+|++++||+++++
T Consensus 142 ~i~~~ir~l~~~~-gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~ls 203 (338)
T 4a1f_A 142 QIRLQLRKLKSQH-KELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALV 203 (338)
T ss_dssp HHHHHHHHHHHHC-TTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHhc-CCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4555666665542 1489999995431 1 2456888899988865
No 153
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=21.59 E-value=71 Score=26.64 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=25.0
Q ss_pred CccE-EEeCCcc-hhHHHHHHHcCCceEEEecch
Q 042918 19 KISC-VIADGAM-GWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~-vI~D~~~-~~~~~~A~~lgiP~i~~~~~~ 50 (285)
.||+ ||+|.-. ..+..-|.++|||+|.++-+.
T Consensus 117 ~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn 150 (252)
T 3u5c_A 117 EPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLD 150 (252)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTT
T ss_pred CCceEEEeCCccchHHHHHHHHcCCCEEEEEcCC
Confidence 4786 5788765 578888999999999988543
No 154
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=21.05 E-value=84 Score=26.71 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=27.2
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
.+.++.+.. .+||+||.|..++ -+..+.+.+ .+|.++++...
T Consensus 53 ~~al~~~~~---~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~ 103 (358)
T 3bre_A 53 QQAVAVANQ---IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKE 103 (358)
T ss_dssp HHHHHHHHH---HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSC
T ss_pred HHHHHHHHh---CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCC
Confidence 344554443 2599999998775 456666554 47888776544
No 155
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=20.90 E-value=76 Score=25.68 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=24.9
Q ss_pred CccEEEeCCcc---------hhHHHHHHHcCCceEEEecch
Q 042918 19 KISCVIADGAM---------GWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~---------~~~~~~A~~lgiP~i~~~~~~ 50 (285)
.+|++|+|.-. ....++|+.++.|.+......
T Consensus 110 ~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~ 150 (228)
T 3of5_A 110 DLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIK 150 (228)
T ss_dssp SCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECS
T ss_pred cCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCC
Confidence 69999999532 146899999999998876554
No 156
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.76 E-value=21 Score=27.31 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=22.5
Q ss_pred HHHHHHhcce---EEeecCC----CCCccHHHHHHHHHHHH
Q 042918 236 SYICAIRKVG---QRFNKTK----MGSSQGKKLTTRWIKCS 269 (285)
Q Consensus 236 ~~~~~~~gvG---~~l~~~~----~~~~~~~~l~~ai~~~~ 269 (285)
+++.+.+++| |.+++++ ..-.|+++|.+.|++.+
T Consensus 9 RLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~ 49 (150)
T 3j21_Q 9 RIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGV 49 (150)
T ss_dssp HHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTS
T ss_pred HHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCC
Confidence 3455567887 5778765 23477888888777643
No 157
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=20.66 E-value=63 Score=22.25 Aligned_cols=32 Identities=6% Similarity=-0.064 Sum_probs=20.8
Q ss_pred CccEEEeCCcch--hHHHHHHHc-------CCceEEEecch
Q 042918 19 KISCVIADGAMG--WAMVAAEEM-------KIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~~ 50 (285)
+||++|.|..++ .+..+.+.+ ++|.++++...
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (127)
T 2jba_A 46 WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARG 86 (127)
T ss_dssp CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETT
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCC
Confidence 699999998764 344554443 56777766543
No 158
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=20.63 E-value=1e+02 Score=26.51 Aligned_cols=30 Identities=13% Similarity=-0.139 Sum_probs=21.2
Q ss_pred CccEEEeCCcch-hHHHHHHHcCCceEEEec
Q 042918 19 KISCVIADGAMG-WAMVAAEEMKIRRAAYLA 48 (285)
Q Consensus 19 ~~d~vI~D~~~~-~~~~~A~~lgiP~i~~~~ 48 (285)
+||+||...... -...+.+.+|||++.+..
T Consensus 96 ~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 96 QPDVVFITYVDRXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp CCSEEEEESCCHHHHHHHHHHHTSCEEEECC
T ss_pred CCCEEEEeCCccchHHHHHHhcCCcEEEEec
Confidence 599999865432 334556788999998753
No 159
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=20.62 E-value=92 Score=25.85 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=24.2
Q ss_pred HHHHHHHHhhhcCCCCccEEEeCCc---chhHHHHH----HHcCCceEEEe
Q 042918 4 KLEELIEEINRQEDEKISCVIADGA---MGWAMVAA----EEMKIRRAAYL 47 (285)
Q Consensus 4 ~~~~ll~~l~~~~~~~~d~vI~D~~---~~~~~~~A----~~lgiP~i~~~ 47 (285)
.+-++++++. .+||++++|.. .+-...+| -.+++|+|...
T Consensus 98 ~ll~al~~L~----~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 144 (246)
T 3ga2_A 98 LIIEAAKKLE----TEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIA 144 (246)
T ss_dssp HHHHHHHHCS----SCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHhcC----CCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeee
Confidence 4556777775 36999999964 23233333 34466777643
No 160
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=20.47 E-value=77 Score=25.72 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=25.4
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHH-----cCCceEEEecch
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEE-----MKIRRAAYLACS 50 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~-----lgiP~i~~~~~~ 50 (285)
++.++.+.. .+||+||.|..++ -+..+++. -.+|.++++...
T Consensus 163 ~eal~~l~~---~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~ 211 (254)
T 2ayx_A 163 VDALNVLSK---NHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANA 211 (254)
T ss_dssp HHHHHHHHH---SCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESST
T ss_pred HHHHHHHHh---CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence 344454443 3699999997664 23444333 268888876543
No 161
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=20.37 E-value=59 Score=26.48 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=25.5
Q ss_pred CccE-EEeCCcc-hhHHHHHHHcCCceEEEecch
Q 042918 19 KISC-VIADGAM-GWAMVAAEEMKIRRAAYLACS 50 (285)
Q Consensus 19 ~~d~-vI~D~~~-~~~~~~A~~lgiP~i~~~~~~ 50 (285)
.||+ +|+|.-- ..+..-|.++|||+|.++-+.
T Consensus 149 ~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn 182 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAIKEANNLGIPVFAIVDTN 182 (218)
T ss_dssp CCCSCEEEETGGGHHHHHHHHHHTCCCEEECCSS
T ss_pred CCCeEEecCcccccHHHHHHHHhCCCEEEEEeCc
Confidence 4885 6889765 578888999999999987543
No 162
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=20.23 E-value=68 Score=25.49 Aligned_cols=31 Identities=10% Similarity=-0.001 Sum_probs=20.7
Q ss_pred CccEEEeCCcch--hHHHHHHHc----CCceEEEecc
Q 042918 19 KISCVIADGAMG--WAMVAAEEM----KIRRAAYLAC 49 (285)
Q Consensus 19 ~~d~vI~D~~~~--~~~~~A~~l----giP~i~~~~~ 49 (285)
+||+||.|..++ .+..+++.+ ++|.++++..
T Consensus 49 ~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 49 RPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 599999997664 344554443 6888876643
No 163
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=20.08 E-value=1e+02 Score=26.31 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=21.4
Q ss_pred CccEEEeCCcchhHHHHHHHcCCceEEEecc
Q 042918 19 KISCVIADGAMGWAMVAAEEMKIRRAAYLAC 49 (285)
Q Consensus 19 ~~d~vI~D~~~~~~~~~A~~lgiP~i~~~~~ 49 (285)
+||+||......-...--+++|||++.+...
T Consensus 116 ~PDLIi~~~~~~~~~~~L~~~gipvv~~~~~ 146 (335)
T 4hn9_A 116 TPDVVFLPMKLKKTADTLESLGIKAVVVNPE 146 (335)
T ss_dssp CCSEEEEEGGGHHHHHHHHHTTCCEEEECCC
T ss_pred CCCEEEEeCcchhHHHHHHHcCCCEEEEcCC
Confidence 6999998754333344446779999987644
No 164
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=20.06 E-value=1.3e+02 Score=24.42 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCCCccEEEeCCcch--hHHHHHHHc-------CCceEEEecc
Q 042918 6 EELIEEINRQEDEKISCVIADGAMG--WAMVAAEEM-------KIRRAAYLAC 49 (285)
Q Consensus 6 ~~ll~~l~~~~~~~~d~vI~D~~~~--~~~~~A~~l-------giP~i~~~~~ 49 (285)
++.++.+... .+||+||.|..++ -+..+++++ .+|.++++..
T Consensus 158 ~eal~~l~~~--~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~ 208 (259)
T 3luf_A 158 REALATLEQH--PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVS 208 (259)
T ss_dssp HHHHHHHHHC--TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECS
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEcc
Confidence 4455555432 2489999998876 455665543 3677766543
Done!