BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042919
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 160/363 (44%), Gaps = 33/363 (9%)
Query: 56 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
L LD+S N L G S +S T +K+L++SSNQ G + + +KSL+YLSL +N F
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 279
Query: 116 GLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQ 174
G L LS + F G N LP LL+
Sbjct: 280 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
Query: 175 LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNK 234
L+ +DLS N+ G P L + L TL L +N+ SG LP+
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNL------------- 385
Query: 235 FSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQXXX 294
CQ P N + L GF G+IP ++S L SL LS N SG +P
Sbjct: 386 --CQNPKNTLQEL------YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 295 XXXXXXXXXXXDNHLQGEVVFPNS----TNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350
N L+GE+ P L L L+ N +G+I GLS T+L + L
Sbjct: 438 LSKLRDLKLWL-NMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGA 409
SNN L G+IP W G L L L +S N G++P+ + SL L ++ N FNG+IP A
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Query: 410 LRR 412
+ +
Sbjct: 555 MFK 557
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 178/415 (42%), Gaps = 54/415 (13%)
Query: 56 LVELDLSKNNLYGHLS--PCLSNLTHIKVLDLSSNQL------TGNLQSVIANIKSLEYL 107
L LDLS+N+L G ++ L + + +K L++SSN L +G L+ + SLE L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-----LNSLEVL 153
Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
L N+ G + + ++ L+ S KI + + L+ L++ + +
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTG 212
Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
L L+ +D+S NKL G F S + T+L L + +N G P L
Sbjct: 213 IPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQY 270
Query: 228 LDISHNKFSCQLP----------------GN--MGKILP------XXXXXXXXXXGFEGR 263
L ++ NKF+ ++P GN G + P F G
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 264 IP-SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLC 322
+P ++ +M+ L+ LDLS N FSGELP N+ G ++ NLC
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----PNLC 386
Query: 323 W--------LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI 374
LYL NN F+GKI LS + L+ L LS N L G IP G+LS L+ L +
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 375 SENQLCGSVPSS-FNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
N L G +P + +L L + N G IP L +L + L +N +G
Sbjct: 447 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 501
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 167/373 (44%), Gaps = 42/373 (11%)
Query: 56 LVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
L+ LDLS NN G + P C + ++ L L +N TG + ++N L L L N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 114 FEGLFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLQALPSILL 172
G +SL + SKL+ KL ++++ E +E + + L+ + + + +PS L
Sbjct: 427 LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLS 484
Query: 173 QQLDLRFIDLSHNKLQGIFPSWL--LQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLR 227
+L +I LS+N+L G P W+ L+N L L L NNS SGN +P+ D L+
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGN--IPAELGDCRSLIW 539
Query: 228 LDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRL-----ESLDLSSN 282
LD++ N F+ +P M K G+I ++ KR + + +
Sbjct: 540 LDLNTNLFNGTIPAAMFKQ--------------SGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 283 NFSGELPRQXXXXXXXXXXXXXXDNHLQGEV-------VFPNSTNLCWLYLNNNHFSGKI 335
L Q ++ V F N+ ++ +L ++ N SG I
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 336 QDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN-LSSLRR 394
+ L L+L +N + G IP G+L GL LD+S N+L G +P + + L+ L
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 395 LYMHMNAFNGSIP 407
+ + N +G IP
Sbjct: 706 IDLSNNNLSGPIP 718
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 58/276 (21%)
Query: 42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
LT + +G+ NL + LS N L G + + L ++ +L LS+N +GN+ + + +
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQV-FKLSNSLVKIETE-------------EFP 147
+SL +L L+ N F G K K+ F V I+ + EF
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 594
Query: 148 GLPEYQLKALNLRN-CSLQA------LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNT 200
G+ QL L+ RN C++ + + F+D+S+N L G P +
Sbjct: 595 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI----G 650
Query: 201 KLDTLYLLN---NSLSGNFQLPSSKHDLLR---LDISHNKFSCQLPGNMGKILPXXXXXX 254
+ L++LN N +SG +P DL LD+S NK
Sbjct: 651 SMPYLFILNLGHNDISG--SIPDEVGDLRGLNILDLSSNK-------------------- 688
Query: 255 XXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
+GRIP +MS + L +DLS+NN SG +P
Sbjct: 689 -----LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP-----GNMGKILPXXXXXXXXXXGF 260
+L N+ ++G+ L LD+S N S + G+ + F
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL--KFLNVSSNTLDF 137
Query: 261 EGRIPSSMSEMKRLESLDLSSNNFSGE--LPRQXXXXXXXXXXXXXXDNHLQGEVVFPNS 318
G++ + ++ LE LDLS+N+ SG + N + G+V
Sbjct: 138 PGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 196
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
NL +L +++N+FS I L ++L LD+S N L G + L+ L+IS NQ
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 379 LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDNEFSG 428
G +P L SL+ L + N F G IP L + +LT LDL N F G
Sbjct: 256 FVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 160/363 (44%), Gaps = 33/363 (9%)
Query: 56 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
L LD+S N L G S +S T +K+L++SSNQ G + + +KSL+YLSL +N F
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFT 282
Query: 116 GLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQ 174
G L LS + F G N LP LL+
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
Query: 175 LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNK 234
L+ +DLS N+ G P L + L TL L +N+ SG LP+
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-LPNL------------- 388
Query: 235 FSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQXXX 294
CQ P N + L GF G+IP ++S L SL LS N SG +P
Sbjct: 389 --CQNPKNTLQEL------YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 295 XXXXXXXXXXXDNHLQGEVVFPNS----TNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350
N L+GE+ P L L L+ N +G+I GLS T+L + L
Sbjct: 441 LSKLRDLKLWL-NMLEGEI--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGA 409
SNN L G+IP W G L L L +S N G++P+ + SL L ++ N FNG+IP A
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 410 LRR 412
+ +
Sbjct: 558 MFK 560
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 117/415 (28%), Positives = 178/415 (42%), Gaps = 54/415 (13%)
Query: 56 LVELDLSKNNLYGHLS--PCLSNLTHIKVLDLSSNQL------TGNLQSVIANIKSLEYL 107
L LDLS+N+L G ++ L + + +K L++SSN L +G L+ + SLE L
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-----LNSLEVL 156
Query: 108 SLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQAL 167
L N+ G + + ++ L+ S KI + + L+ L++ + +
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKI-SGDVDVSRCVNLEFLDVSSNNFSTG 215
Query: 168 PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLR 227
L L+ +D+S NKL G F S + T+L L + +N G P L
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIP-PLPLKSLQY 273
Query: 228 LDISHNKFSCQLP----------------GN--MGKILP------XXXXXXXXXXGFEGR 263
L ++ NKF+ ++P GN G + P F G
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 264 IP-SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLC 322
+P ++ +M+ L+ LDLS N FSGELP N+ G ++ NLC
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL----PNLC 389
Query: 323 W--------LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI 374
LYL NN F+GKI LS + L+ L LS N L G IP G+LS L+ L +
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 375 SENQLCGSVPSS-FNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
N L G +P + +L L + N G IP L +L + L +N +G
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 167/373 (44%), Gaps = 42/373 (11%)
Query: 56 LVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
L+ LDLS NN G + P C + ++ L L +N TG + ++N L L L N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 114 FEGLFSFNSLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLQALPSILL 172
G +SL + SKL+ KL ++++ E +E + + L+ + + + +PS L
Sbjct: 430 LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLS 487
Query: 173 QQLDLRFIDLSHNKLQGIFPSWL--LQNNTKLDTLYLLNNSLSGNFQLPSSKHD---LLR 227
+L +I LS+N+L G P W+ L+N L L L NNS SGN +P+ D L+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGN--IPAELGDCRSLIW 542
Query: 228 LDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRL-----ESLDLSSN 282
LD++ N F+ +P M K G+I ++ KR + + +
Sbjct: 543 LDLNTNLFNGTIPAAMFKQ--------------SGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 283 NFSGELPRQXXXXXXXXXXXXXXDNHLQGEV-------VFPNSTNLCWLYLNNNHFSGKI 335
L Q ++ V F N+ ++ +L ++ N SG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 336 QDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN-LSSLRR 394
+ L L+L +N + G IP G+L GL LD+S N+L G +P + + L+ L
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 395 LYMHMNAFNGSIP 407
+ + N +G IP
Sbjct: 709 IDLSNNNLSGPIP 721
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 58/276 (21%)
Query: 42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101
LT + +G+ NL + LS N L G + + L ++ +L LS+N +GN+ + + +
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQV-FKLSNSLVKIETE-------------EFP 147
+SL +L L+ N F G K K+ F V I+ + EF
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 148 GLPEYQLKALNLRN-CSLQA------LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNT 200
G+ QL L+ RN C++ + + F+D+S+N L G P +
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI----G 653
Query: 201 KLDTLYLLN---NSLSGNFQLPSSKHDLLR---LDISHNKFSCQLPGNMGKILPXXXXXX 254
+ L++LN N +SG +P DL LD+S NK
Sbjct: 654 SMPYLFILNLGHNDISG--SIPDEVGDLRGLNILDLSSNK-------------------- 691
Query: 255 XXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290
+GRIP +MS + L +DLS+NN SG +P
Sbjct: 692 -----LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP-----GNMGKILPXXXXXXXXXXGF 260
+L N+ ++G+ L LD+S N S + G+ + F
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL--KFLNVSSNTLDF 140
Query: 261 EGRIPSSMSEMKRLESLDLSSNNFSGE--LPRQXXXXXXXXXXXXXXDNHLQGEVVFPNS 318
G++ + ++ LE LDLS+N+ SG + N + G+V
Sbjct: 141 PGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
NL +L +++N+FS I L ++L LD+S N L G + L+ L+IS NQ
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 379 LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDNEFSG 428
G +P L SL+ L + N F G IP L + +LT LDL N F G
Sbjct: 259 FVGPIP-PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 112/250 (44%), Gaps = 19/250 (7%)
Query: 151 EYQLKALNLRNCSLQ---ALPSILLQQLDLRFIDLSH-NKLQGIFPSWLLQNNTKLDTLY 206
Y++ L+L +L +PS L L F+ + N L G P + + T+L LY
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLY 107
Query: 207 LLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIP 265
+ + ++SG S L+ LD S+N S LP ++ LP G IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIP 166
Query: 266 SSMSEMKRL-ESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGE--VVFPNSTNLC 322
S +L S+ +S N +G++P N L+G+ V+F + N
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR--NMLEGDASVLFGSDKNTQ 224
Query: 323 WLYLNNNHFS---GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379
++L N + GK+ GLSK +L LDL NN +YG +P L L L++S N L
Sbjct: 225 KIHLAKNSLAFDLGKV--GLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 380 CGSVPSSFNL 389
CG +P NL
Sbjct: 281 CGEIPQGGNL 290
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378
T L +LY+ + + SG I D LS+ +L+ LD S N L G +PP +L L + N+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 379 LCGSVPSSFNLSSLRRLYMHM----NAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
+ G++P S+ S +L+ M N G IP +L+L +DL N G
Sbjct: 161 ISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-ANLNLAFVDLSRNMLEG 211
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 97/242 (40%), Gaps = 51/242 (21%)
Query: 49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLS 108
I +L L L ++ N+ G + LS + + LD S N L+G L I+++ +L ++
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 109 LDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP 168
D N G +S + SKL ++ + L
Sbjct: 156 FDGNRISGAIP-DSYGSFSKL------------------------FTSMTISRNRLTGKI 190
Query: 169 SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
L+L F+DLS N L+G S L ++ ++L NSL+ + +L L
Sbjct: 191 PPTFANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 229 DISHNKFSCQLPGNMGKILPXXXXXXXXXXGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288
D+ +N+ G +P ++++K L SL++S NN GE+
Sbjct: 250 DLRNNR-------------------------IYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 289 PR 290
P+
Sbjct: 285 PQ 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 15/176 (8%)
Query: 261 EGRIPSSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTN 320
G IP +S++K L +LD S N SG LP N + G + P+S
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAI--PDSYG 170
Query: 321 -----LCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDIS 375
+ ++ N +GKI + +L +DLS NML G FG+ Q + ++
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 376 ENQLC---GSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
+N L G V S NL+ L + N G++P L + L L++ N G
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLD---LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 266 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 323
S++ E+ L L L+ N LP +N LQ + VF TNL +
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
L L +N + K T+L ELDLS N L F L+ L+ L + +NQL SV
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSV 196
Query: 384 PSSF--NLSSLRRLYMHMNAFNGSIPG 408
P L+SL+ +++H N ++ + PG
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%)
Query: 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
+L NL ELDLS N L LT +K L L NQL V + SL+Y+ L D
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214
Query: 112 NNFE 115
N ++
Sbjct: 215 NPWD 218
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 48 TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYL 107
+ + EL NL L L+ N L + LT++K L L NQL V + +L YL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 108 SLDDNNFEGLFS--FNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
+L N + L F+ L N ++L + N L + F L QLK L L L+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLS--YNQLQSLPEGVFDKL--TQLKDLRLYQNQLK 194
Query: 166 ALPSILLQQL-DLRFIDLSHNKLQGIFP 192
++P + +L L++I L N P
Sbjct: 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 23/149 (15%)
Query: 75 SNLTHIKVLDLSSNQLTGNLQSVIAN---IKSLE---------YLSLDDNNFEGLFSFNS 122
+NL V D + ++ +IAN IKS++ YL+L N + +
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKE 83
Query: 123 LKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFID 181
L N + L N L + F L LK L L LQ+LP + +L +L +++
Sbjct: 84 LTNLTYL--ILTGNQLQSLPNGVFDKLTN--LKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 182 LSHNKLQ----GIFPSWLLQNNTKLDTLY 206
L+HN+LQ G+F L N T+LD Y
Sbjct: 140 LAHNQLQSLPKGVFDK--LTNLTELDLSY 166
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 100/220 (45%), Gaps = 23/220 (10%)
Query: 29 SVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN 88
SV+ S +K +P + +T +LDL N L S LT +++L L+ N
Sbjct: 20 SVDCSSKKLTAIPSNIPADTK--------KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 89 QLTGNLQSVIANIKSLEYLSLDDNNFEGL--FSFNSLKNHSKLQVFKLSNSLVKIETEEF 146
+L + +K+LE L + DN + L F+ L N ++L++ + N L + F
Sbjct: 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR--NQLKSLPPRVF 129
Query: 147 PGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTL 205
L +L L+L LQ+LP + +L L+ + L +N+L+ + P T+L TL
Sbjct: 130 DSL--TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTL 186
Query: 206 YLLNNSLSGNFQLPSSKHDLLR----LDISHNKFSCQLPG 241
L NN L ++P D L L + N + C G
Sbjct: 187 KLDNNQLK---RVPEGAFDSLEKLKMLQLQENPWDCTCNG 223
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373
VF + T L +L L N + K TSL EL L NN L F L+ L+ L
Sbjct: 128 VFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187
Query: 374 ISENQLCGSVPSSFN-LSSLRRLYMHMNAFNGSIPGAL 410
+ NQL +F+ L L+ L + N ++ + G +
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII 225
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 36/183 (19%)
Query: 40 VPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIA 99
+PL VF TG L NL +LD+S+N + L +L ++K L++ N L +
Sbjct: 95 IPLGVF--TG---LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149
Query: 100 NIKSLEYLSLDDNNFEGL------------------FSFNSLKNHSKLQVFKLSNSLVKI 141
+ SLE L+L+ N + + N+++++S ++++L +
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK----VL 205
Query: 142 ETEEFPGLPEYQ--------LKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQGIFP 192
E +P L L +L++ +C+L A+P + ++ L LRF++LS+N + I
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 193 SWL 195
S L
Sbjct: 266 SML 268
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Query: 55 NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNF 114
+L EL+L++N + +NL +++ L L SN+L V + +L L + +N
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 115 EGL--FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
L + F L N L+V N LV I F GL L+ L L C+L ++P+ L
Sbjct: 117 VILLDYMFQDLYNLKSLEVG--DNDLVYISHRAFSGL--NSLEQLTLEKCNLTSIPTEAL 172
Query: 173 QQLD-LRFIDLSHNKLQGI 190
L L + L H + I
Sbjct: 173 SHLHGLIVLRLRHLNINAI 191
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 41 PLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN 100
P++ + + EL L E+ L L L +++VL++S NQLT +SV +
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318
Query: 101 IKSLEYLSLDDN 112
+ +LE L LD N
Sbjct: 319 VGNLETLILDSN 330
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 30/212 (14%)
Query: 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
L++L L LS+N++ + L ++ L+L N+LT + L+ L L +
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 112 NNFEGL--FSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS 169
N E + ++FN + + +L + +L L I F GL L+ LNL C+L+ +P+
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKR-LSYISEGAFEGLS--NLRYLNLAMCNLREIPN 202
Query: 170 ILLQQLDLRFIDLSHNKLQGIFPS-----------WLLQNNTK---------LDTLYLLN 209
L + L +DLS N L I P W++Q+ + L +L +N
Sbjct: 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 210 NSLSGNFQLP----SSKHDLLRLDISHNKFSC 237
+ + LP + H L R+ + HN ++C
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 266 SSMSEMKRLESLDLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQG--EVVFPNSTNLCW 323
S++ E+ L L L+ N LP +N LQ + VF TNL +
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
LYL +N + K T+L LDL NN L F L+ L+ L +++NQL SV
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL-KSV 196
Query: 384 PSSF--NLSSLRRLYMHMNAFN 403
P L+SL +++ N ++
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWD 218
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 309 LQGEVVFPNSTNLCWLYLNNNHFSGKIQD--GLSKATSLLELDLSNNMLYGQIPPWFGNL 366
+QG PN + +L L N K+ D L + T+L L L+ N L F L
Sbjct: 56 VQGIQYLPN---VRYLALGGN----KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 367 SGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
+ L+ L + ENQL S+P L++L LY++ N G + +LT LDL +N
Sbjct: 109 TNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 425 EF 426
+
Sbjct: 168 QL 169
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
+L NL L L N L LT++ LDL +NQL + V + L+ LSL+D
Sbjct: 131 KLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLND 190
Query: 112 NNFEGL 117
N + +
Sbjct: 191 NQLKSV 196
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%)
Query: 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
+L NL LDL N L LT +K L L+ NQL V + SL ++ L +
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
Query: 112 NNFE 115
N ++
Sbjct: 215 NPWD 218
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 64 NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSL 123
N + G L +L H LDLS N L+ S + SL+YL+L N ++ L +
Sbjct: 63 NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 124 KNHSKLQVFKLSN--SLVKIETEEFPGLP---EYQLKALNLRNCSLQALPSI 170
N + LQ ++ N + +I +F GL E ++KAL+LRN Q+L SI
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN- 377
NL L L ++ + D SL LDLS+N L WFG LS L++L++ N
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 378 -QLCGSV---PSSFNLSSLR 393
Q G P+ NL +LR
Sbjct: 110 YQTLGVTSLFPNLTNLQTLR 129
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 64 NNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSL 123
N + G L +L H LDLS N L+ S + SL+YL+L N ++ L +
Sbjct: 89 NTIEGDAFYSLGSLEH---LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 124 KNHSKLQVFKLSN--SLVKIETEEFPGLP---EYQLKALNLRNCSLQALPSI 170
N + LQ ++ N + +I +F GL E ++KAL+LRN Q+L SI
Sbjct: 146 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 197
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN- 377
NL L L ++ + D SL LDLS+N L WFG LS L++L++ N
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Query: 378 -QLCGSV---PSSFNLSSLR 393
Q G P+ NL +LR
Sbjct: 136 YQTLGVTSLFPNLTNLQTLR 155
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 109/235 (46%), Gaps = 36/235 (15%)
Query: 24 SITYLSVEDSCRKTNGVPLTVFVNTGICE-LKNLVELDLSKNNLYGHLSPC----LSNLT 78
S+T+LS++ + ++ + + TG E L+NL ELDLS +++ S C L NL+
Sbjct: 326 SLTHLSIKGNTKR-------LELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLS 376
Query: 79 HIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSL 138
H++ L+LS N+ LE L L + + + +N L+V LS+SL
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 139 VKIETEE-FPGLPEYQLKALNL-----------RNCSLQALPSILLQQLDLRFIDLSHNK 186
+ I +E+ F GLP L+ LNL + SLQ L L+ L L F DLS
Sbjct: 437 LDISSEQLFDGLP--ALQHLNLQGNHFPKGNIQKTNSLQTLGR--LEILVLSFCDLSSID 492
Query: 187 LQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPG 241
Q F S + N+ L L ++S+ L + L+++ N S LP
Sbjct: 493 -QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG-----IYLNLASNHISIILPS 541
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 85/212 (40%), Gaps = 31/212 (14%)
Query: 47 NTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEY 106
NT C L ELDL+ +L L L L+ +K L LS+N+ Q +N SL +
Sbjct: 272 NTFHC-FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329
Query: 107 LSLDDN------------NFEGLFSFN--------------SLKNHSKLQVFKLS-NSLV 139
LS+ N N E L + L+N S LQ LS N +
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389
Query: 140 KIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNN 199
++TE F P+ +L L ++ S L+ ++LSH+ L I L
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGL 448
Query: 200 TKLDTLYLLNNSL-SGNFQLPSSKHDLLRLDI 230
L L L N GN Q +S L RL+I
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 337 DGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRR 394
D ++ +L LDLS L P F +LS LQ L+++ NQL SVP L+SL++
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQK 522
Query: 395 LYMHMNAFNGSIP 407
+++H N ++ S P
Sbjct: 523 IWLHTNPWDCSCP 535
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 91
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 92 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 146 SNLTNLEHLDLSSNKIQSIY 165
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 52 ELKNLVELDLSKNNLYGHLSPCLSN-LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLD 110
EL+NL LDLS+ L LSP N L+ ++VL+++SNQL + + SL+ + L
Sbjct: 468 ELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 111 DN 112
N
Sbjct: 527 TN 528
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 324 LYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGS 382
L LN+N DGL + L++L+L N L G P F S +Q L + EN++
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 383 VPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
F L L+ L ++ N + +PG+ SLT L+L N F
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
L L N +G + A+ + EL L N + F L L+ L++ +NQ+ +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 384 PSSF-NLSSLRRLYMHMNAFN 403
P SF +L+SL L + N FN
Sbjct: 119 PGSFEHLNSLTSLNLASNPFN 139
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 50/184 (27%)
Query: 61 LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSF 120
+S + L+G L H+ L+L NQLTG ++ N FEG
Sbjct: 44 ISSDGLFGRLP-------HLVKLELKRNQLTG----------------IEPNAFEGA--- 77
Query: 121 NSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LR 178
S +Q +L N + +I + F GL +QLK LNL + + + + L+ L
Sbjct: 78 ------SHIQELQLGENKIKEISNKMFLGL--HQLKTLNLYDNQISCVMPGSFEHLNSLT 129
Query: 179 FIDLSHNKLQ-----GIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233
++L+ N F WL + + N + PS D+ D+ H+
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSL---------NGGAARCGAPSKVRDVQIKDLPHS 180
Query: 234 KFSC 237
+F C
Sbjct: 181 EFKC 184
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 148/404 (36%), Gaps = 101/404 (25%)
Query: 54 KNLVELDLSKNNLYGHLS----PCLSNLTH--IKVLDLSSN----QLTGNLQSVIANIKS 103
K L L+ N+LY +S C++ + +++LD+S N +TGN + I+ ++
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 104 LEYL----------------SLDDNNFEGL---------------FSFNS--LKNHSKLQ 130
+ D N F GL FS NS + L+
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 131 VFKLS-NSLVKIETEEFPGLPEYQLKALN------LRNCSLQALPSILLQQLDLRFIDLS 183
V L+ N + KI E F GL Q+ L+ L + + LP + +IDL
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV-------AYIDLQ 346
Query: 184 HNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNM 243
N + I + KL TL L +N+L+ +PS DI L GN
Sbjct: 347 KNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP------DIF-------LSGNK 392
Query: 244 GKILPXXXXXXXXXXGFEGR-----IPSSMSEMKRLESLDLSSNNFSGELPRQXXXXXXX 298
LP E R I + + L+ L L+ N FS Q
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452
Query: 299 XXXXXXXDNHLQGEVVFPNSTNLCW-----------LYLNNNHFSGKIQDGLSKATSLLE 347
+N LQ T LCW LYLN+N+ + S T+L
Sbjct: 453 LEQLFLGENMLQ----LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508
Query: 348 LDLSNNML----YGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387
L L++N L + +P + L+ LDIS NQL P F
Sbjct: 509 LSLNSNRLTVLSHNDLP------ANLEILDISRNQLLAPNPDVF 546
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 53 LKNLVELDLSKNNLYG-HLSPCLSNLTHIKVLDLSSNQL 90
LK L LDLSKN + +L P L +K +D SSNQ+
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 29/192 (15%)
Query: 219 PSSKHDLLRLDISHNKFSCQLPGNMGKILPXXXXXXXXXXGFE-GRIPSSMSEMKRLESL 277
PS L LD S+N + + N G + E +I ++MK L+ L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379
Query: 278 DLSSNNFSGELPRQXXXXXXXXXXXXXXDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD 337
D+S N+ S + + G+ + S L L +++N + I
Sbjct: 380 DISQNSVSYDEKK--------------------GDCSWTKS--LLSLNMSSNILTDTIFR 417
Query: 338 GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRL 395
L + LDL +N + IP L LQ L+++ NQL SVP L+SL+++
Sbjct: 418 CLPPRIKV--LDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKI 473
Query: 396 YMHMNAFNGSIP 407
++H N ++ S P
Sbjct: 474 WLHTNPWDCSCP 485
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 43/223 (19%)
Query: 24 SITYLSVEDSCRKTNGVPLTVFVNTGICE-LKNLVELDLSKNNLYGHLSPC----LSNLT 78
S+T+L + + +K + + G E L NL LDLS N++ S C L NL+
Sbjct: 323 SLTHLYIRGNVKK-------LHLGVGCLEKLGNLQTLDLSHNDIEA--SDCCSLQLKNLS 373
Query: 79 HIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSL 138
H++ L+LS N+ G LQS + K +L++ L+ +
Sbjct: 374 HLQTLNLSHNEPLG-LQS------------------------QAFKECPQLELLDLAFTR 408
Query: 139 VKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLD-LRFIDLSHNKLQG--IFPSWL 195
+ I + P + L+ LNL C L LL L LR ++L N Q I + L
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNL 468
Query: 196 LQNNTKLDTLYLLNNS-LSGNFQLPSSKHDLLRLDISHNKFSC 237
LQ L+ L L + LS + Q S + +D+SHN +C
Sbjct: 469 LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC 511
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373
VF T+L LYL N +K TSL L+LS N L F L+ L+ L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 374 ISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
++ NQL S+P L+ L+ L ++ N G R SL + L DN +
Sbjct: 107 LNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 11 KPQELWHKFFQK-GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGH 69
K Q L + F K S+TYL++ S + +P VF +L L EL L+ N L
Sbjct: 63 KLQSLPNGVFNKLTSLTYLNL--STNQLQSLPNGVFD-----KLTQLKELALNTNQLQSL 115
Query: 70 LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFE 115
LT +K L L NQL V + SL+Y+ L DN ++
Sbjct: 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 66/255 (25%)
Query: 35 RKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN------ 88
R+ VP ++ VNT L+L +N++ + +L H+++L LS N
Sbjct: 24 RELAEVPASIPVNTRY--------LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIE 75
Query: 89 -------------QLTGNLQSVIANIKSLEYLS------LDDNNFEGL--FSFNSLKNHS 127
+L N + + ++ EYLS L +N E + ++FN + +
Sbjct: 76 VGAFNGLPSLNTLELFDNRLTTVPT-QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 128 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKL 187
+L + +L L I F GL L+ LNL C+L+ +P+ L + L ++LS N+L
Sbjct: 135 RLDLGELKR-LEYISEAAFEGL--VNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRL 190
Query: 188 QGIFPSWLLQNNTKLDTLYLL-------------------------NNSLSGNFQLPSSK 222
I P Q T L L+L+ NN +S L +
Sbjct: 191 DLIRPG-SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249
Query: 223 HDLLRLDISHNKFSC 237
H L R+ ++HN + C
Sbjct: 250 HRLERVHLNHNPWHC 264
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFL 372
VF + NL +L +++ H + +SL L ++ N +P F L L FL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 373 DISENQLCGSVPSSFN-LSSLRRLYMHMNAF 402
D+S+ QL P++FN LSSL+ L M N F
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 52 ELKNLVELDLSKNNL--YGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSL 109
+L +L LDLS+N L G S T +K LDLS N + + S ++ LE+L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403
Query: 110 DDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEE-FPGLPEYQLKALNLRNCSLQA-- 166
+N + + F+ + L +S++ ++ F GL L+ L + S Q
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS--LEVLKMAGNSFQENF 461
Query: 167 LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
LP I + +L F+DLS +L+ + P+ L +L +LN S + F L + + L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAF----NSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEYLSLDD 111
L+NL+ LD+S + + + L+ ++VL ++ N N L + +++L +L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 112 NNFEGL--FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL------RNC 162
E L +FNSL S LQV +S N+ ++T + L Q+ +L +
Sbjct: 480 CQLEQLSPTAFNSL---SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 163 SLQALPSILLQQLDLRFIDLSHN 185
LQ PS L F++L+ N
Sbjct: 537 ELQHFPS------SLAFLNLTQN 553
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 91
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 92 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 146 SNLTNLEHLDLSSNKIQSIY 165
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFL 372
VF + NL +L +++ H + +SL L ++ N +P F L L FL
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 373 DISENQLCGSVPSSFN-LSSLRRLYMHMNAF 402
D+S+ QL P++FN LSSL+ L M N F
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 115
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 116 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 169
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 170 SNLTNLEHLDLSSNKIQSIY 189
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 66/255 (25%)
Query: 35 RKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN------ 88
R+ VP ++ VNT L+L +N++ + +L H+++L LS N
Sbjct: 24 RELAEVPASIPVNTRY--------LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIE 75
Query: 89 -------------QLTGNLQSVIANIKSLEYLS------LDDNNFEGL--FSFNSLKNHS 127
+L N + + ++ EYLS L +N E + ++FN + +
Sbjct: 76 VGAFNGLPSLNTLELFDNRLTTVPT-QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLR 134
Query: 128 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKL 187
+L + +L L I F GL L+ LNL C+L+ +P+ L + L ++LS N+L
Sbjct: 135 RLDLGELKR-LEYISEAAFEGL--VNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRL 190
Query: 188 QGIFPSWLLQNNTKLDTLYLL-------------------------NNSLSGNFQLPSSK 222
I P Q T L L+L+ NN +S L +
Sbjct: 191 DLIRPG-SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL 249
Query: 223 HDLLRLDISHNKFSC 237
H L R+ ++HN + C
Sbjct: 250 HRLERVHLNHNPWHC 264
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFL 372
VF + NL +L +++ H + +SL L ++ N +P F L L FL
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 373 DISENQLCGSVPSSFN-LSSLRRLYMHMNAF 402
D+S+ QL P++FN LSSL+ L M N F
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 19/209 (9%)
Query: 23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNL--YGHLSPCLSNLTHI 80
S T L +E + K +P VF +L L +L LS N L G S T +
Sbjct: 28 SSATRLELESN--KLQSLPHGVFD-----KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80
Query: 81 KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK 140
K LDLS N + + S ++ LE+L +N + + F+ + L +S++ +
Sbjct: 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139
Query: 141 IETEE-FPGLPEYQLKALNLRNCSLQA--LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQ 197
+ F GL L+ L + S Q LP I + +L F+DLS +L+ + P+
Sbjct: 140 VAFNGIFNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-- 195
Query: 198 NNTKLDTLYLLNNSLSGNFQLPSSKHDLL 226
L +L +LN S + F L + + L
Sbjct: 196 --NSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Query: 53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGN-LQSVIANIKSLEYLSLDD 111
L+NL+ LD+S + + + L+ ++VL ++ N N L + +++L +L L
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 112 NNFEGL--FSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNL------RNC 162
E L +FNSL S LQV +S N+ ++T + L Q+ +L +
Sbjct: 185 CQLEQLSPTAFNSL---SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 163 SLQALPSILLQQLDLRFIDLSHN 185
LQ PS L F++L+ N
Sbjct: 242 ELQHFPS------SLAFLNLTQN 258
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 309 LQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG 368
L+ +F L + +NN + + A+ + E+ L++N L F L
Sbjct: 47 LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106
Query: 369 LQFLDISENQL-CGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
L+ L + N++ C S LSS+R L ++ N PGA SL+ L+L N F
Sbjct: 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
LYL+ N F+ + LS L +DLSNN + F N++ L L +S N+L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 384 PSSFN-LSSLRRLYMHMNAFNGSIPGAL 410
P +F+ L SLR L +H N + GA
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAF 122
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
K+L +DLS N + + SN+T + L LS N+L +KSL LSL N+
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 114 F----EGLFSFNSLKNHSKLQV 131
EG +FN L S L +
Sbjct: 114 ISVVPEG--AFNDLSALSHLAI 133
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-----------NLQ--- 95
+ L NL +LDL+ NN +L+P LS LT + L L +NQ++ NL+
Sbjct: 235 LASLTNLTDLDLA-NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 96 ------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLV 139
S I+N+K+L YL+L NN + +SL +KLQ SN+ V
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFSNNKV 339
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 48 TGICELKNLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
T I LKNL +L L NN ++P L+NLT++ L L +NQ+T + N+ +L
Sbjct: 76 TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
L L N + + + L + LQ S++ V T+ P L+ L++ + +
Sbjct: 133 RLELSSNTISDISALSGL---TSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNKVS 186
Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
+ S+L + +L + ++N++ I P +L N LD L L N L L +S +L
Sbjct: 187 DI-SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 241
Query: 226 LRLDISHNKFSCQLP 240
LD+++N+ S P
Sbjct: 242 TDLDLANNQISNLAP 256
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 39/212 (18%)
Query: 48 TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG--------NLQSVIA 99
+ + L +L +L S N + L P L+NLT ++ LD+SSN+++ NL+S+IA
Sbjct: 145 SALSGLTSLQQLSFSSNQVT-DLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 100 N------------IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK--IETEE 145
+ +L+ LSL+ N + + + SL N + L L+N+ +
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD---LANNQISNLAPLSG 259
Query: 146 FPGLPEYQLKALNLRNCS-LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDT 204
L E +L A + N S L L + L ++L+ N+L+ I P L+N T L T
Sbjct: 260 LTKLTELKLGANQISNISPLAGLTA-------LTNLELNENQLEDISPISNLKNLTYL-T 311
Query: 205 LYLLNNSLSGNFQLPSSKHDLLRLDISHNKFS 236
LY N S + SS L RL S+NK S
Sbjct: 312 LYFNNIS---DISPVSSLTKLQRLFFSNNKVS 340
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 37 TNGVPLTVFVN--TGICELKNLV---ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT 91
TN LT+F N T I LKNL L+LS N + LS LT ++ L SSNQ+T
Sbjct: 107 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVT 164
Query: 92 GNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKL 129
+L+ +AN+ +LE L + N + L N L
Sbjct: 165 -DLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESL 200
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-----------NLQ--- 95
+ L NL +LDL+ NN +L+P LS LT + L L +NQ++ NL+
Sbjct: 234 LASLTNLTDLDLA-NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 96 ------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLV 139
S I+N+K+L YL+L NN + +SL +KLQ SN+ V
Sbjct: 292 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFSNNKV 338
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 48 TGICELKNLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
T I LKNL +L L NN ++P L+NLT++ L L +NQ+T + N+ +L
Sbjct: 76 TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
L L N + + + L + LQ N + ++ P L+ L++ + +
Sbjct: 133 RLELSSNTISDISALSGL---TSLQQLNFGNQVTDLK----PLANLTTLERLDISSNKVS 185
Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
+ S+L + +L + ++N++ I P +L N LD L L N L L +S +L
Sbjct: 186 DI-SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 240
Query: 226 LRLDISHNKFSCQLP 240
LD+++N+ S P
Sbjct: 241 TDLDLANNQISNLAP 255
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 112/248 (45%), Gaps = 63/248 (25%)
Query: 37 TNGVPLTVFVN--TGICELKNLV---ELDLSKNNL----------------YGH----LS 71
TN LT+F N T I LKNL L+LS N + +G+ L
Sbjct: 107 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLK 166
Query: 72 PCLSNLTHIKVLDLSSNQLTG--------NLQSVIAN------------IKSLEYLSLDD 111
P L+NLT ++ LD+SSN+++ NL+S+IA + +L+ LSL+
Sbjct: 167 P-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 225
Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVK--IETEEFPGLPEYQLKALNLRNCS-LQALP 168
N + + + SL N + L L+N+ + L E +L A + N S L L
Sbjct: 226 NQLKDIGTLASLTNLTDLD---LANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 282
Query: 169 SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRL 228
+ L ++L+ N+L+ I P L+N T L TLY N S + SS L RL
Sbjct: 283 A-------LTNLELNENQLEDISPISNLKNLTYL-TLYFNNIS---DISPVSSLTKLQRL 331
Query: 229 DISHNKFS 236
S+NK S
Sbjct: 332 FFSNNKVS 339
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 48 TGICELKNLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
T I LKNL +L L NN ++P L+NLT++ L L +NQ+T + N+ +L
Sbjct: 80 TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLN 136
Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
L L N + + + L + LQ N + ++ P L+ L++ + +
Sbjct: 137 RLELSSNTISDISALSGL---TSLQQLSFGNQVTDLK----PLANLTTLERLDISSNKVS 189
Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
+ S+L + +L + ++N++ I P +L N LD L L N L L +S +L
Sbjct: 190 DI-SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 244
Query: 226 LRLDISHNKFSCQLP 240
LD+++N+ S P
Sbjct: 245 TDLDLANNQISNLAP 259
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-----------NLQ--- 95
+ L NL +LDL+ NN +L+P LS LT + L L +NQ++ NL+
Sbjct: 238 LASLTNLTDLDLA-NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 295
Query: 96 ------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLV 139
S I+N+K+L YL+L NN + +SL +KLQ +N+ V
Sbjct: 296 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFANNKV 342
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 39/211 (18%)
Query: 50 ICELKNLVELD-LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG--------NLQSVIAN 100
I L L L LS N L P L+NLT ++ LD+SSN+++ NL+S+IA
Sbjct: 148 ISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 206
Query: 101 ------------IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK--IETEEF 146
+ +L+ LSL+ N + + + SL N + L L+N+ +
Sbjct: 207 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD---LANNQISNLAPLSGL 263
Query: 147 PGLPEYQLKALNLRNCS-LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTL 205
L E +L A + N S L L + L ++L+ N+L+ I P L+N T L TL
Sbjct: 264 TKLTELKLGANQISNISPLAGLTA-------LTNLELNENQLEDISPISNLKNLTYL-TL 315
Query: 206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFS 236
Y N S + SS L RL ++NK S
Sbjct: 316 YFNNIS---DISPVSSLTKLQRLFFANNKVS 343
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 312 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQF 371
+ F T L WL L+ N T L L L+NN L F +L+ L
Sbjct: 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 372 LDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
L + NQL S+PS L+ L+ L ++ N GA + +L L L N+
Sbjct: 112 LYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 58 ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG- 116
+LDL L LT + L+L NQL V ++ L L L +N
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 117 -LFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL 175
L F+ L KL + N L + + F L +LK L L LQ++P+ +L
Sbjct: 99 PLGVFDHLTQLDKL--YLGGNQLKSLPSGVFDRLT--KLKELRLNTNQLQSIPAGAFDKL 154
Query: 176 -DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
+L+ + LS N+LQ + P KL T+ L N
Sbjct: 155 TNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGN 189
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 48 TGICELKNLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
T I LKNL +L L NN ++P L+NLT++ L L +NQ+T + N+ +L
Sbjct: 81 TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLN 137
Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
L L N + + + L + LQ N + ++ P L+ L++ + +
Sbjct: 138 RLELSSNTISDISALSGL---TSLQQLSFGNQVTDLK----PLANLTTLERLDISSNKVS 190
Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
+ S+L + +L + ++N++ I P +L N LD L L N L L +S +L
Sbjct: 191 DI-SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 245
Query: 226 LRLDISHNKFSCQLP 240
LD+++N+ S P
Sbjct: 246 TDLDLANNQISNLAP 260
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 25/101 (24%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-----------NLQ--- 95
+ L NL +LDL+ NN +L+P LS LT + L L +NQ++ NL+
Sbjct: 239 LASLTNLTDLDLA-NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296
Query: 96 ------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ 130
S I+N+K+L YL+L NN + +SL +KLQ
Sbjct: 297 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQ 334
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 96/211 (45%), Gaps = 39/211 (18%)
Query: 50 ICELKNLVELD-LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG--------NLQSVIAN 100
I L L L LS N L P L+NLT ++ LD+SSN+++ NL+S+IA
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207
Query: 101 ------------IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK--IETEEF 146
+ +L+ LSL+ N + + + SL N + L L+N+ +
Sbjct: 208 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD---LANNQISNLAPLSGL 264
Query: 147 PGLPEYQLKALNLRNCS-LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTL 205
L E +L A + N S L L + L ++L+ N+L+ I P L+N T L TL
Sbjct: 265 TKLTELKLGANQISNISPLAGLTA-------LTNLELNENQLEDISPISNLKNLTYL-TL 316
Query: 206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFS 236
Y N S + SS L RL +NK S
Sbjct: 317 YFNNIS---DISPVSSLTKLQRLFFYNNKVS 344
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 312 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQF 371
+ F T L WL L+ N T L L L+NN L F +L+ L
Sbjct: 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 372 LDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
L + NQL S+PS L+ L+ L ++ N GA + +L L L N+
Sbjct: 112 LYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 8/156 (5%)
Query: 58 ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEG- 116
+LDL L LT + L+L NQL V ++ L L L +N
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 117 -LFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL 175
L F+ L KL + N L + + F L +LK L L LQ++P+ +L
Sbjct: 99 PLGVFDHLTQLDKL--YLGGNQLKSLPSGVFDRLT--KLKELRLNTNQLQSIPAGAFDKL 154
Query: 176 -DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210
+L+ + LS N+LQ + P KL T+ L N
Sbjct: 155 TNLQTLSLSTNQLQSV-PHGAFDRLGKLQTITLFGN 189
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 8/112 (7%)
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKA-TSLLELDLSNNMLYGQIPPW-FGNLSGLQFLDISE 376
TN LYL++N + K++ G+ + +L EL L +N L G +P F +L+ L LD+
Sbjct: 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97
Query: 377 NQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426
NQL +PS+ L L+ L+M N +P + R LT L L N+
Sbjct: 98 NQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 78/205 (38%), Gaps = 38/205 (18%)
Query: 19 FFQKGSITYLSVE--DSCRKTNGVPLTVFVNTGI-----CELKNLVELDLSKNNLYGHLS 71
F I+Y+ SCR + L GI L L +LDLS N +
Sbjct: 37 FLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 72 PC-LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF--SFNSLKNHSK 128
P L H+ L L L + + +L+YL L DNN + L +F L N +
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 129 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQ 188
L + P +PE+ + L+ +L +LL Q N +
Sbjct: 157 L----------FLHGNRIPSVPEHAFRGLH-------SLDRLLLHQ----------NHVA 189
Query: 189 GIFPSWLLQNNTKLDTLYLLNNSLS 213
+ P ++ +L TLYL N+LS
Sbjct: 190 RVHPH-AFRDLGRLMTLYLFANNLS 213
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN-QLCGS 382
++L+ N S +L L L +N L G F L+ L+ LD+S+N QL
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 383 VPSSFN-LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDN 424
P++F L L L++ PG R +L L L+DN
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 26/139 (18%)
Query: 315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP------------- 361
F + NL L+L++N +G + T L +LDLS+N + P
Sbjct: 51 FQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 362 ------------WFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPG 408
F L+ LQ+L + +N L ++F +L +L L++H N
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 409 ALRRSLSLTVLDLRDNEFS 427
A R SL L L N +
Sbjct: 171 AFRGLHSLDRLLLHQNHVA 189
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 92
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 93 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 147 SNLTNLEHLDLSSNKIQSIY 166
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 48 TGICELKNLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
T I LKNL +L L NN ++P L+NLT++ L L +NQ+T + N+ +L
Sbjct: 76 TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
L L N + + + L + LQ N + ++ P L+ L++ + +
Sbjct: 133 RLELSSNTISDISALSGL---TSLQQLNFGNQVTDLK----PLANLTTLERLDISSNKVS 185
Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
+ S+L + +L + ++N++ I P +L N LD L L N L L +S +L
Sbjct: 186 DI-SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 240
Query: 226 LRLDISHNKFSCQLP 240
LD+++N+ S P
Sbjct: 241 TDLDLANNQISNLAP 255
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 25/101 (24%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-----------NLQ--- 95
+ L NL +LDL+ NN +L+P LS LT + L L +NQ++ NL+
Sbjct: 234 LASLTNLTDLDLA-NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 291
Query: 96 ------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ 130
S I+N+K+L YL+L NN + +SL +KLQ
Sbjct: 292 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQ 329
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 93
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 94 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 148 SNLTNLEHLDLSSNKIQSIY 167
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 48 TGICELKNLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
T I LKNL +L L NN ++P L+NLT++ L L +NQ+T + N+ +L
Sbjct: 76 TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
L L N + + + L + LQ S++ V T+ P L+ L++ + +
Sbjct: 133 RLELSSNTISDISALSGL---TSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNKVS 186
Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
+ S+L + +L + ++N++ I P +L N LD L L N L L +S +L
Sbjct: 187 DI-SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 241
Query: 226 LRLDISHNKFSCQLP 240
LD+++N+ S P
Sbjct: 242 TDLDLANNQISNLAP 256
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 25/101 (24%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-----------NLQ--- 95
+ L NL +LDL+ NN +L+P LS LT + L L +NQ++ NL+
Sbjct: 235 LASLTNLTDLDLA-NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 96 ------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ 130
S I+N+K+L YL+L NN + +SL +KLQ
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQ 330
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 37 TNGVPLTVFVN--TGICELKNLV---ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT 91
TN LT+F N T I LKNL L+LS N + LS LT ++ L SSNQ+T
Sbjct: 107 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVT 164
Query: 92 GNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKL 129
+L+ +AN+ +LE L + N + L N L
Sbjct: 165 -DLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESL 200
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 39/212 (18%)
Query: 48 TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG--------NLQSVIA 99
+ + L +L +L S N + L P L+NLT ++ LD+SSN+++ NL+S+IA
Sbjct: 145 SALSGLTSLQQLSFSSNQVT-DLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIA 202
Query: 100 N------------IKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK--IETEE 145
+ +L+ LSL+ N + + + SL N + L L+N+ +
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD---LANNQISNLAPLSG 259
Query: 146 FPGLPEYQLKALNLRNCS-LQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDT 204
L E +L A + N S L L + L ++L+ N+L+ I P L+N T L T
Sbjct: 260 LTKLTELKLGANQISNISPLAGLTA-------LTNLELNENQLEDISPISNLKNLTYL-T 311
Query: 205 LYLLNNSLSGNFQLPSSKHDLLRLDISHNKFS 236
LY N S + SS L RL +NK S
Sbjct: 312 LYFNNIS---DISPVSSLTKLQRLFFYNNKVS 340
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 16/195 (8%)
Query: 48 TGICELKNLVELD--LSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLE 105
T I LKNL +L L NN ++P L+NLT++ L L +NQ+T + N+ +L
Sbjct: 76 TDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDPLKNLTNLN 132
Query: 106 YLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQ 165
L L N + + + L + LQ S++ V T+ P L+ L++ + +
Sbjct: 133 RLELSSNTISDISALSGL---TSLQQLNFSSNQV---TDLKPLANLTTLERLDISSNKVS 186
Query: 166 ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDL 225
+ S+L + +L + ++N++ I P +L N LD L L N L L +S +L
Sbjct: 187 DI-SVLAKLTNLESLIATNNQISDITPLGILTN---LDELSLNGNQLKDIGTL-ASLTNL 241
Query: 226 LRLDISHNKFSCQLP 240
LD+++N+ S P
Sbjct: 242 TDLDLANNQISNLAP 256
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 25/101 (24%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-----------NLQ--- 95
+ L NL +LDL+ NN +L+P LS LT + L L +NQ++ NL+
Sbjct: 235 LASLTNLTDLDLA-NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 292
Query: 96 ------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ 130
S I+N+K+L YL+L NN + +SL +KLQ
Sbjct: 293 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---TKLQ 330
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 37 TNGVPLTVFVN--TGICELKNLV---ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT 91
TN LT+F N T I LKNL L+LS N + LS LT ++ L+ SSNQ+T
Sbjct: 107 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVT 164
Query: 92 GNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKL 129
+L+ +AN+ +LE L + N + L N L
Sbjct: 165 -DLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESL 200
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 91
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 92 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 146 SNLTNLEHLDLSSNKIQSIY 165
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 92
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 93 ALGAFSGLSSLQ------KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 146
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 147 SNLTNLEHLDLSSNKIQSIY 166
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 126 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 34 CRKTNGVPLTVFVNTGICEL-----KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSN 88
C +N V G+ E+ N L+L +NN+ + +L H++VL L N
Sbjct: 50 CSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 89 -------------------QLTGNLQSVIANIKSLEYLS------LDDNNFEGL--FSFN 121
+L N +VI + + EYLS L +N E + ++FN
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIESIPSYAFN 168
Query: 122 SLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFID 181
+ + +L + +L L I F GL + LK LNL C+++ +P+ L + L ++
Sbjct: 169 RVPSLMRLDLGELK-KLEYISEGAFEGL--FNLKYLNLGMCNIKDMPN-LTPLVGLEELE 224
Query: 182 LSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHD----LLRLDISHNKFS 236
+S N I P + L L+++N+ +S + + D L+ L+++HN S
Sbjct: 225 MSGNHFPEIRPG-SFHGLSSLKKLWVMNSQVS---LIERNAFDGLASLVELNLAHNNLS 279
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-N 136
H+ +DLS N + ++ + ++ L++L ++ + N+ + S L + KL N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQA--LPSILLQQL-DLRFIDLSHNKLQGIFPS 193
+++ET F GL L+ L L C+L L + L L + L N ++ I P+
Sbjct: 90 QFLQLETGAFNGLA--NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 194 WLLQNNTKLDTLYLLNNSLSG-------NFQLPSSKH-DLLRL 228
N + L L N + NFQ KH LLRL
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---GKHFTLLRL 187
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112
L +L++L+LS+N L S NL ++VLDLS N + + +L+ L+LD N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 113 NFEGL 117
+ +
Sbjct: 382 QLKSV 386
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS-N 136
H+ +DLS N + ++ + ++ L++L ++ + N+ + S L + KL N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 137 SLVKIETEEFPGLPEYQLKALNLRNCSLQA--LPSILLQQL-DLRFIDLSHNKLQGIFPS 193
+++ET F GL L+ L L C+L L + L L + L N ++ I P+
Sbjct: 90 QFLQLETGAFNGLA--NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147
Query: 194 WLLQNNTKLDTLYLLNNSLSG-------NFQLPSSKH-DLLRL 228
N + L L N + NFQ KH LLRL
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ---GKHFTLLRL 187
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 14/140 (10%)
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N L S + ++VLDLS ++ ++ L L L N + L
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL- 93
Query: 119 SFNSLKNHSKLQVFKLSNSLVKIET-----EEFPGLPEYQLKALNLRNCSLQA--LPSIL 171
+ + S LQ LV +ET E FP LK LN+ + +Q+ LP
Sbjct: 94 ALGAFSGLSSLQ------KLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 147
Query: 172 LQQLDLRFIDLSHNKLQGIF 191
+L +DLS NK+Q I+
Sbjct: 148 SNLTNLEHLDLSSNKIQSIY 167
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 344 SLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQL 379
+L EL++++N++ ++P +F NL+ L+ LD+S N++
Sbjct: 127 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 57/133 (42%), Gaps = 30/133 (22%)
Query: 48 TGICELKNLV---ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT--------GNLQ- 95
T + LKNL EL+LS N L ++ L IK LDL+S Q+T NLQ
Sbjct: 82 TDLTPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 139
Query: 96 -----------SVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL-SNSLVKIET 143
S +A + +L+YLS+ +N L L N SKL + N + I
Sbjct: 140 LYLDLNQITNISPLAGLTNLQYLSIGNNQVNDL---TPLANLSKLTTLRADDNKISDISP 196
Query: 144 -EEFPGLPEYQLK 155
P L E LK
Sbjct: 197 LASLPNLIEVHLK 209
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 48 TGICELKNLV---ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSL 104
T + LKNL EL+LS N L ++S ++ L IK LDL+S Q+T + +A + +L
Sbjct: 76 TDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD--VTPLAGLSNL 131
Query: 105 EYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLV 139
+ L LD N + L N LQ + N+ V
Sbjct: 132 QVLYLDLNQITNISPLAGLTN---LQYLSIGNAQV 163
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 315 FPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373
P +T + LYL +N + K++ G+ + T L LDL NN L F L+ L L
Sbjct: 36 IPTTTQV--LYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 92
Query: 374 ISENQLCGSVPSSF--NLSSLRRLYMHMNAFN 403
+++NQL S+P NL SL +++ N ++
Sbjct: 93 LNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWD 123
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 77 LTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGL--FSFNSLKN 125
LT + LDL +NQLT V + L LSL+DN + + +F++LK+
Sbjct: 61 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKS 111
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 315 FPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373
P +T + LYL +N + K++ G+ + T L LDL NN L F L+ L L
Sbjct: 28 IPTTTQV--LYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84
Query: 374 ISENQLCGSVPSSF--NLSSLRRLYMHMNAFN 403
+++NQL S+P NL SL +++ N ++
Sbjct: 85 LNDNQL-KSIPRGAFDNLKSLTHIWLLNNPWD 115
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 315 FPNSTNLCWLYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373
P +T + LYL +N + K++ G+ + T L LDL NN L F L+ L L
Sbjct: 28 IPTTTQV--LYLYDNRIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84
Query: 374 ISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSI 406
+++NQL S+P NL SL +++ N ++ +
Sbjct: 85 LNDNQL-KSIPRGAFDNLRSLTHIWLLNNPWDCAC 118
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI 374
NL L L +N + +D S SL LDLS N L WF LS L FL++
Sbjct: 50 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 105
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 67/170 (39%), Gaps = 36/170 (21%)
Query: 55 NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT----------GNL---------- 94
NL +LDLS NNL+ + S L ++ L L N + NL
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFT 308
Query: 95 -QSV------------IANIKSLEYLSLDDNNFEGLFS--FNSLKNHSKLQVFKLSNSLV 139
QSV +K LEYL++DDNN S F L + L + K SL
Sbjct: 309 KQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQ 368
Query: 140 KIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQL-DLRFIDLSHNKLQ 188
+ E F L L LNL + + + L LR +DL N+++
Sbjct: 369 TLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIE 418
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 19 FFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSP-CLSNL 77
F G++T+L + + + + VP F L +L L L +N + H+ P +L
Sbjct: 148 FRDLGNLTHLFLHGN--RISSVPERAFRG-----LHSLDRLLLHQNRV-AHVHPHAFRDL 199
Query: 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
+ L L +N L+ +A +++L+YL L+DN + + + + LQ F+ S+S
Sbjct: 200 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW--VCDCRARPLWAWLQKFRGSSS 257
Query: 138 LVKIE-TEEFPGLPEYQLKALNLRNCSL 164
V + G +L A +L+ C++
Sbjct: 258 EVPCSLPQRLAGRDLKRLAANDLQGCAV 285
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
++L+ N S +L L L +N+L F L+ L+ LD+S+N SV
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 384 -PSSFN-LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
P++F+ L L L++ PG R +L L L+DN
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 142
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI 374
NL L L +N + +D S SL LDLS N L WF LS L FL++
Sbjct: 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 47/201 (23%)
Query: 12 PQELWHKFFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICE-------------LKNLVE 58
P LW + G I LS E+S +N L+ N GIC+ + +
Sbjct: 2 PHTLWMVWVL-GVIISLSKEES---SNQASLSCDRN-GICKGSSGSLNSIPSGLTEAVKS 56
Query: 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118
LDLS N + + L +++ L L+SN + + +++ SLE+L L N L
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 119 SF-----------------------NSLKNH-SKLQVFKLSN--SLVKIETEEFPGLP-- 150
S SL +H +KLQ+ ++ N + KI+ ++F GL
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176
Query: 151 -EYQLKALNLRNCSLQALPSI 170
E ++ A +L++ ++L SI
Sbjct: 177 EELEIDASDLQSYEPKSLKSI 197
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 39/214 (18%)
Query: 50 ICELKNLVELDLSKNNLYGHLSPCLSN---------LTHIKVLDLSSNQLTGNLQSVIAN 100
IC N+ LDLS+N +L+ C SN LT + L+ +N+LT + ++
Sbjct: 70 ICTSNNITTLDLSQNTNLTYLA-CDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQ 125
Query: 101 IKSLEYLSLDDNNFEGL-FSFNS----LKNHSKLQVFKLS----NSLVKIETE--EFPGL 149
L YL+ N + S N+ L H ++ KL L ++ + L
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185
Query: 150 PEYQLKALNLRNCSLQALPSILL-QQLDLRFIDLSHNKLQGIFPSWLLQNN--------- 199
Q K LN NC + + L Q + L F+D S NKL I + L Q
Sbjct: 186 DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPL 245
Query: 200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233
T+LD ++LS L + DLL +D++HN
Sbjct: 246 TELDV-----STLSKLTTLHCIQTDLLEIDLTHN 274
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 19 FFQKGSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSP-CLSNL 77
F G++T+L + + + + VP F L +L L L +N + H+ P +L
Sbjct: 149 FRDLGNLTHLFLHGN--RISSVPERAFRG-----LHSLDRLLLHQNRV-AHVHPHAFRDL 200
Query: 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
+ L L +N L+ +A +++L+YL L+DN + + + + LQ F+ S+S
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW--VCDCRARPLWAWLQKFRGSSS 258
Query: 138 LVKIE-TEEFPGLPEYQLKALNLRNCS 163
V + G +L A +L+ C+
Sbjct: 259 EVPCSLPQRLAGRDLKRLAANDLQGCA 285
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 324 LYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383
++L+ N S +L L L +N+L F L+ L+ LD+S+N SV
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 384 -PSSFN-LSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428
P++F+ L L L++ PG R +L L L+DN
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N+ +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLT 161
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
K+ L LS+N LY L T + L+L +LT LQ V + L L L N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQ-VDGTLPVLGTLDLSHNQ 88
Query: 114 FEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
+ L + L V +S N L + GL E L+ L L+ L+ LP LL
Sbjct: 89 LQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTLPPGLL 144
Query: 173 QQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
L + L++N+L + P+ LL LDTL L NSL
Sbjct: 145 TPTPKLEKLSLANNQLTEL-PAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N+ +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLT 161
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNN 113
K+ L LS+N LY L T + L+L +LT LQ V + L L L N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELT-KLQ-VDGTLPVLGTLDLSHNQ 88
Query: 114 FEGLFSFNSLKNHSKLQVFKLS-NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILL 172
+ L + L V +S N L + GL E L+ L L+ L+ LP LL
Sbjct: 89 LQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELYLKGNELKTLPPGLL 144
Query: 173 QQL-DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212
L + L++N+L + P+ LL LDTL L NSL
Sbjct: 145 TPTPKLEKLSLANNQLTEL-PAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N+ +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N+ +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N+ +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLT 161
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 309 LQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG 368
L+ E TNL L L++NH + + +L LDLS+N L+ F +L
Sbjct: 54 LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113
Query: 369 LQFLDISENQLCGSVPSSF-NLSSLRRLYMHMN 400
L+ L + N + ++F +++ L++LY+ N
Sbjct: 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 35/174 (20%)
Query: 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111
L NL L LS N+L S + +++ LDLSSN L + + +++++LE L L +
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121
Query: 112 NNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSIL 171
N+ + N+ ++ ++LQ LS + + P +K N LP ++
Sbjct: 122 NHI-VVVDRNAFEDMAQLQKLYLSQN-------QISRFPVELIKDGN-------KLPKLM 166
Query: 172 LQQLDLRFIDLSHNKLQGI-------FPSWLLQNNTKLDTLYLLNNSLSGNFQL 218
L +DLS NKL+ + P+W+ + LYL NN L + +L
Sbjct: 167 L-------LDLSSNKLKKLPLTDLQKLPAWV------KNGLYLHNNPLECDCKL 207
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 149 LPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQG----IFPSWLLQNNTKLDT 204
L + QL+ NL S + L S+L + D + + LS+N L I L + +L++
Sbjct: 140 LEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLES 199
Query: 205 LYLLNNSLSGN-----FQLPSSKHDLLRLDISHNKFSCQLPGNMG 244
L L N ++ + +SK L LD+S NK GN G
Sbjct: 200 LKLENCGITAANCKDLCDVVASKASLQELDLSSNKL-----GNAG 239
>pdb|1XMX|A Chain A, Crystal Structure Of Protein Vc1899 From Vibrio Cholerae
Length = 385
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 345
VV PNS LCWLY N+ + ++QD ++ A L
Sbjct: 117 VVEPNSDCLCWLYPEGNNDT-QVQDRITIADYL 148
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 127 SKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNK 186
S LQ+F +S ++ K + L L L SL LP+ + +LR +DLSHN+
Sbjct: 232 SNLQIFNISANIFKYDF----------LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR 281
Query: 187 LQGI 190
L +
Sbjct: 282 LTSL 285
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 83 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 139
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N +
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 348 LDLSNNMLYGQIPPWFG-NLSGLQFLDISENQLCGSVP--SSFNLSSLRRLYMHMNAFNG 404
LDLS+N L Q P G L L LD+S N+L S+P + L L+ LY+ N
Sbjct: 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT 138
Query: 405 SIPGALRRSLSLTVLDLRDNEFS 427
PG L + L L L +N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT 161
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 324 LYLNNNHFSGKIQDGL-SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGS 382
L+LNNN + K++ G+ +L +L ++N L F L+ L LD+++N L S
Sbjct: 38 LWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KS 95
Query: 383 VPSSF--NLSSLRRLYMHMNAFN 403
+P NL SL +Y++ N ++
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPWD 118
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
T++ +LDLS N L A + LEY L+ NN + LFS +SL ++ L S
Sbjct: 258 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRS 316
Query: 138 LVK--IETEEFPGLPEYQ------LKALNLRNCSLQALPSILLQQL-DLRFIDLS 183
K I P + ++ L+ LN+ + + + S + L +L+++ LS
Sbjct: 317 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 371
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
T++ +LDLS N L A + LEY L+ NN + LFS +SL ++ L S
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRS 306
Query: 138 LVK--IETEEFPGLPEYQ------LKALNLRNCSLQALPSILLQQL-DLRFIDLS 183
K I P + ++ L+ LN+ + + + S + L +L+++ LS
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNS 137
T++ +LDLS N L A + LEY L+ NN + LFS +SL ++ L S
Sbjct: 253 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRS 311
Query: 138 LVK--IETEEFPGLPEYQ------LKALNLRNCSLQALPSILLQQL-DLRFIDLS 183
K I P + ++ L+ LN+ + + + S + L +L+++ LS
Sbjct: 312 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,655,352
Number of Sequences: 62578
Number of extensions: 449449
Number of successful extensions: 1707
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 461
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)