Query 042919
Match_columns 428
No_of_seqs 214 out of 2512
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 19:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8.6E-42 3E-46 343.8 27.5 91 338-428 627-718 (768)
2 3t6q_A CD180 antigen; protein- 100.0 2.2E-40 7.6E-45 326.4 36.8 394 24-428 34-514 (606)
3 3t6q_A CD180 antigen; protein- 100.0 7.9E-41 2.7E-45 329.5 31.7 395 23-428 57-561 (606)
4 3rgz_A Protein brassinosteroid 100.0 3.4E-41 1.2E-45 339.4 29.0 375 48-427 94-503 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-39 5.5E-44 320.2 30.7 380 42-428 68-559 (606)
6 4eco_A Uncharacterized protein 100.0 1.2E-39 4.1E-44 321.0 26.5 348 70-427 198-600 (636)
7 2z63_A TOLL-like receptor 4, v 100.0 2E-39 6.8E-44 317.4 26.6 391 24-428 29-532 (570)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-39 1.9E-43 316.4 29.4 386 23-427 32-534 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 7.1E-38 2.4E-42 304.9 33.2 386 23-428 26-511 (549)
10 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-37 8.2E-42 308.7 33.1 171 258-428 391-598 (680)
11 4ecn_A Leucine-rich repeat pro 100.0 1E-37 3.5E-42 312.4 30.0 346 70-427 440-840 (876)
12 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-36 9.4E-41 301.1 36.6 392 23-427 25-517 (680)
13 2z63_A TOLL-like receptor 4, v 100.0 4.8E-37 1.7E-41 300.5 29.1 368 54-428 28-508 (570)
14 4eco_A Uncharacterized protein 100.0 4.8E-37 1.6E-41 302.5 27.8 364 54-427 81-579 (636)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-37 6E-42 315.6 23.1 109 200-310 266-375 (844)
16 3v47_A TOLL-like receptor 5B a 100.0 7.8E-36 2.7E-40 283.7 29.5 357 54-428 30-409 (455)
17 1o6v_A Internalin A; bacterial 100.0 4.5E-35 1.5E-39 278.7 33.3 345 53-428 45-389 (466)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-35 7.2E-40 285.4 31.3 220 201-428 248-482 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 2.3E-36 8E-41 302.6 23.5 360 42-412 437-849 (876)
20 3j0a_A TOLL-like receptor 5; m 100.0 6.5E-36 2.2E-40 304.1 26.8 393 23-427 24-517 (844)
21 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-36 1.8E-40 291.8 22.9 367 54-428 26-487 (549)
22 3v47_A TOLL-like receptor 5B a 100.0 1.4E-34 4.7E-39 275.1 28.0 350 23-404 30-409 (455)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.1E-34 3.1E-38 276.2 30.0 361 54-428 52-511 (562)
24 2z7x_B TOLL-like receptor 1, v 100.0 6E-34 2E-38 275.3 28.5 361 54-428 21-458 (520)
25 1o6v_A Internalin A; bacterial 100.0 1E-32 3.6E-37 262.4 36.6 327 49-404 63-389 (466)
26 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-33 1.8E-37 275.6 33.8 162 266-427 414-580 (635)
27 4fmz_A Internalin; leucine ric 100.0 1.1E-32 3.8E-37 252.5 29.8 306 74-427 40-346 (347)
28 4fmz_A Internalin; leucine ric 100.0 4.8E-32 1.7E-36 248.2 31.6 307 50-403 40-346 (347)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.4E-32 2.9E-36 262.4 29.9 358 52-428 29-487 (562)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.7E-32 1.3E-36 256.6 26.1 299 49-381 37-353 (457)
31 3o6n_A APL1; leucine-rich repe 100.0 6.5E-32 2.2E-36 251.2 26.5 309 52-427 43-352 (390)
32 4g8a_A TOLL-like receptor 4; l 100.0 6.1E-31 2.1E-35 260.7 31.1 182 221-403 369-580 (635)
33 2id5_A Lingo-1, leucine rich r 100.0 2.7E-31 9.4E-36 253.8 27.1 314 81-403 14-333 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 2.9E-31 9.9E-36 253.6 26.3 298 54-381 32-334 (477)
35 1jl5_A Outer protein YOPM; leu 100.0 2.5E-31 8.6E-36 250.7 24.0 340 46-428 26-410 (454)
36 3oja_B Anopheles plasmodium-re 100.0 7.3E-31 2.5E-35 257.1 26.7 308 52-427 49-358 (597)
37 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-30 4.2E-35 246.2 24.9 339 56-428 20-388 (457)
38 1z7x_W Ribonuclease inhibitor; 100.0 7.4E-34 2.5E-38 270.6 0.2 370 54-426 3-439 (461)
39 1jl5_A Outer protein YOPM; leu 100.0 2.1E-30 7.3E-35 244.4 23.4 334 52-428 9-371 (454)
40 3o6n_A APL1; leucine-rich repe 100.0 5.1E-29 1.7E-33 231.7 26.1 297 42-382 57-354 (390)
41 1xku_A Decorin; proteoglycan, 100.0 1.8E-28 6.3E-33 222.6 28.0 264 153-425 53-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-28 7.8E-33 222.2 24.9 263 153-425 55-331 (332)
43 1z7x_W Ribonuclease inhibitor; 100.0 8.4E-32 2.9E-36 256.4 1.0 390 24-419 4-460 (461)
44 3ogk_B Coronatine-insensitive 100.0 1.6E-31 5.6E-36 262.5 1.8 374 52-428 110-527 (592)
45 3oja_B Anopheles plasmodium-re 100.0 3.9E-28 1.3E-32 237.8 25.3 295 42-381 63-359 (597)
46 1xku_A Decorin; proteoglycan, 100.0 4E-27 1.4E-31 213.8 27.9 242 55-332 32-276 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-27 8E-32 215.5 23.5 288 55-401 34-331 (332)
48 3ogk_B Coronatine-insensitive 100.0 1.4E-30 4.9E-35 255.8 0.1 412 9-427 14-501 (592)
49 1ogq_A PGIP-2, polygalacturona 99.9 9.6E-28 3.3E-32 215.7 14.2 244 153-401 51-302 (313)
50 1ogq_A PGIP-2, polygalacturona 99.9 6.2E-27 2.1E-31 210.4 17.3 248 175-428 50-306 (313)
51 2z66_A Variable lymphocyte rec 99.9 2.5E-26 8.4E-31 206.4 19.5 243 155-403 10-261 (306)
52 2p1m_B Transport inhibitor res 99.9 4.6E-30 1.6E-34 252.3 -5.4 374 51-427 102-519 (594)
53 2z80_A TOLL-like receptor 2, v 99.9 5.5E-26 1.9E-30 208.3 17.4 270 154-428 33-315 (353)
54 3zyi_A Leucine-rich repeat-con 99.9 4.3E-25 1.5E-29 209.1 22.7 244 156-403 58-303 (452)
55 3zyj_A Leucine-rich repeat-con 99.9 3.7E-25 1.3E-29 208.8 21.8 244 156-403 47-292 (440)
56 4fcg_A Uncharacterized protein 99.9 4.4E-25 1.5E-29 199.5 20.0 201 222-426 103-313 (328)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-25 5.6E-30 198.8 16.8 266 155-425 14-285 (285)
58 2z66_A Variable lymphocyte rec 99.9 2.6E-25 8.9E-30 199.7 18.0 261 153-414 29-298 (306)
59 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-23 4.2E-28 204.2 29.8 258 102-427 40-297 (622)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-24 5.6E-29 192.3 21.6 203 223-427 32-238 (285)
61 2z80_A TOLL-like receptor 2, v 99.9 1.1E-24 3.6E-29 199.7 19.3 278 52-383 29-317 (353)
62 3zyj_A Leucine-rich repeat-con 99.9 4.1E-24 1.4E-28 201.7 23.8 244 176-427 44-292 (440)
63 2p1m_B Transport inhibitor res 99.9 1.8E-27 6.2E-32 233.8 0.3 415 8-427 6-494 (594)
64 3zyi_A Leucine-rich repeat-con 99.9 4E-24 1.4E-28 202.4 23.2 244 176-427 55-303 (452)
65 4fcg_A Uncharacterized protein 99.9 6.6E-24 2.3E-28 191.8 19.1 230 154-403 83-314 (328)
66 1wwl_A Monocyte differentiatio 99.9 6.8E-25 2.3E-29 197.2 12.1 248 154-428 45-310 (312)
67 2o6q_A Variable lymphocyte rec 99.9 6.2E-23 2.1E-27 180.5 22.8 198 225-427 18-218 (270)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-22 7.3E-27 195.5 27.0 265 78-387 40-304 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-25 1.1E-29 199.8 6.0 236 153-401 35-273 (317)
70 2z62_A TOLL-like receptor 4, v 99.9 3E-23 1E-27 183.3 18.4 204 223-428 28-238 (276)
71 3o53_A Protein LRIM1, AGAP0063 99.9 4.6E-24 1.6E-28 192.2 11.1 243 48-306 28-271 (317)
72 1p9a_G Platelet glycoprotein I 99.9 6.7E-22 2.3E-26 175.3 19.8 175 248-426 31-207 (290)
73 3oja_A Leucine-rich immune mol 99.9 3.7E-23 1.3E-27 196.9 11.4 233 153-398 35-270 (487)
74 3oja_A Leucine-rich immune mol 99.9 5.9E-23 2E-27 195.5 11.5 243 165-422 20-270 (487)
75 2o6q_A Variable lymphocyte rec 99.9 1.1E-20 3.8E-25 166.1 22.4 200 176-403 17-218 (270)
76 2ast_B S-phase kinase-associat 99.9 7.3E-23 2.5E-27 186.3 8.6 252 154-412 49-315 (336)
77 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.2E-28 195.0 3.5 254 154-428 11-317 (386)
78 1h6u_A Internalin H; cell adhe 99.9 3.1E-21 1.1E-25 172.7 18.5 193 197-403 38-230 (308)
79 1wwl_A Monocyte differentiatio 99.9 8.1E-23 2.8E-27 183.6 7.4 249 50-356 39-309 (312)
80 3rfs_A Internalin B, repeat mo 99.9 8.1E-21 2.8E-25 167.1 19.8 195 221-428 39-236 (272)
81 3rfs_A Internalin B, repeat mo 99.9 3.6E-21 1.2E-25 169.3 16.9 184 222-415 62-247 (272)
82 2ast_B S-phase kinase-associat 99.9 2.1E-22 7.2E-27 183.3 8.4 239 8-283 9-258 (336)
83 3goz_A Leucine-rich repeat-con 99.9 2.5E-22 8.7E-27 184.3 8.8 248 157-404 3-298 (362)
84 3m19_A Variable lymphocyte rec 99.9 2.8E-20 9.5E-25 161.7 19.3 176 223-403 14-192 (251)
85 4glp_A Monocyte differentiatio 99.9 5.4E-21 1.8E-25 171.7 15.1 229 176-428 65-308 (310)
86 2z62_A TOLL-like receptor 4, v 99.9 1.8E-20 6.2E-25 165.4 17.5 219 157-380 12-237 (276)
87 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.9E-25 162.9 13.7 197 223-425 31-237 (239)
88 1p9a_G Platelet glycoprotein I 99.8 1.1E-19 3.7E-24 161.1 20.0 199 172-380 7-208 (290)
89 2ca6_A RAN GTPase-activating p 99.8 1.7E-21 5.8E-26 180.7 6.8 152 248-399 159-339 (386)
90 3m19_A Variable lymphocyte rec 99.8 3.2E-19 1.1E-23 155.0 19.3 179 200-382 14-194 (251)
91 4glp_A Monocyte differentiatio 99.8 2.4E-20 8.1E-25 167.4 12.4 223 153-403 65-307 (310)
92 1h6u_A Internalin H; cell adhe 99.8 1.6E-19 5.5E-24 161.6 17.7 210 158-384 25-234 (308)
93 3goz_A Leucine-rich repeat-con 99.8 3.3E-20 1.1E-24 170.2 11.5 59 59-117 3-66 (362)
94 2xwt_C Thyrotropin receptor; s 99.8 6.8E-20 2.3E-24 158.0 11.6 179 247-428 30-219 (239)
95 2o6s_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 148.4 15.6 179 226-415 10-190 (208)
96 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.7E-23 154.8 15.8 171 221-404 44-214 (291)
97 4ezg_A Putative uncharacterize 99.8 7.7E-19 2.6E-23 146.5 11.0 154 269-428 41-195 (197)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 5.9E-18 2E-22 143.5 14.6 150 251-403 14-166 (220)
99 2o6s_A Variable lymphocyte rec 99.8 4.8E-18 1.6E-22 143.1 13.5 167 251-428 10-179 (208)
100 1h6t_A Internalin B; cell adhe 99.8 9.2E-18 3.2E-22 148.8 15.4 189 180-384 29-217 (291)
101 1m9s_A Internalin B; cell inva 99.8 1.1E-17 3.8E-22 162.3 16.8 171 221-404 41-211 (605)
102 3cvr_A Invasion plasmid antige 99.8 3.7E-17 1.3E-21 156.9 19.0 187 200-412 59-252 (571)
103 2v9t_B SLIT homolog 2 protein 99.7 2.7E-17 9.1E-22 139.5 15.3 148 251-402 14-164 (220)
104 1m9s_A Internalin B; cell inva 99.7 3.3E-17 1.1E-21 159.0 16.0 195 177-387 23-217 (605)
105 3e6j_A Variable lymphocyte rec 99.7 8.3E-17 2.8E-21 137.4 16.2 149 250-403 21-172 (229)
106 4ay9_X Follicle-stimulating ho 99.7 1.3E-16 4.6E-21 145.4 16.8 199 154-356 11-215 (350)
107 4ay9_X Follicle-stimulating ho 99.7 1.4E-16 4.9E-21 145.2 16.4 238 58-305 13-254 (350)
108 2xot_A Amphoterin-induced prot 99.7 4.5E-17 1.5E-21 149.2 13.1 174 226-426 21-201 (361)
109 4fs7_A Uncharacterized protein 99.7 3.5E-16 1.2E-20 145.1 18.8 327 72-419 65-393 (394)
110 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.4E-22 143.7 10.0 170 221-405 17-187 (263)
111 3cvr_A Invasion plasmid antige 99.7 1.9E-16 6.6E-21 151.9 16.9 184 176-387 60-250 (571)
112 4ezg_A Putative uncharacterize 99.7 1.7E-16 5.9E-21 132.2 13.5 149 247-403 43-194 (197)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 3.7E-16 1.3E-20 132.4 15.2 154 225-383 13-169 (220)
114 2v9t_B SLIT homolog 2 protein 99.7 4.3E-16 1.5E-20 132.0 15.1 152 225-381 13-166 (220)
115 2xot_A Amphoterin-induced prot 99.7 1.6E-16 5.4E-21 145.5 13.2 175 203-380 21-202 (361)
116 1xeu_A Internalin C; cellular 99.7 3E-16 1E-20 136.8 12.1 171 200-384 19-189 (263)
117 3sb4_A Hypothetical leucine ri 99.7 3.1E-16 1.1E-20 141.7 12.4 196 222-421 100-328 (329)
118 3e6j_A Variable lymphocyte rec 99.7 2.3E-15 8E-20 128.4 16.9 154 224-383 20-175 (229)
119 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8.3E-20 124.5 13.5 109 320-428 30-140 (192)
120 4fs7_A Uncharacterized protein 99.6 1.6E-14 5.5E-19 133.9 20.2 333 41-395 58-393 (394)
121 4fdw_A Leucine rich hypothetic 99.6 3.6E-14 1.2E-18 130.9 21.2 267 126-424 112-380 (401)
122 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 119.0 14.6 109 319-427 28-137 (177)
123 4fdw_A Leucine rich hypothetic 99.6 5.7E-14 1.9E-18 129.6 20.4 236 154-426 115-357 (401)
124 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 122.4 8.3 131 272-403 24-160 (168)
125 4gt6_A Cell surface protein; l 99.6 3.6E-13 1.2E-17 124.8 23.1 335 41-425 50-389 (394)
126 1dce_A Protein (RAB geranylger 99.6 3.5E-17 1.2E-21 157.9 -4.5 196 220-421 346-567 (567)
127 3sb4_A Hypothetical leucine ri 99.6 6.9E-15 2.4E-19 132.9 10.6 259 53-326 48-328 (329)
128 2wfh_A SLIT homolog 2 protein 99.6 4.2E-14 1.4E-18 117.0 14.4 106 320-426 32-138 (193)
129 2ell_A Acidic leucine-rich nuc 99.6 1.4E-14 4.9E-19 117.3 10.3 128 297-426 24-159 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 7.2E-15 2.5E-19 116.5 8.0 125 297-423 17-149 (149)
131 1w8a_A SLIT protein; signaling 99.5 2.3E-14 7.9E-19 118.6 10.8 111 273-383 30-142 (192)
132 1a9n_A U2A', U2A'; complex (nu 99.5 8.2E-15 2.8E-19 119.6 6.8 133 268-403 15-153 (176)
133 1dce_A Protein (RAB geranylger 99.5 8.5E-17 2.9E-21 155.2 -6.2 175 247-428 348-547 (567)
134 2je0_A Acidic leucine-rich nuc 99.5 3.2E-14 1.1E-18 112.7 8.7 126 248-398 17-148 (149)
135 2wfh_A SLIT homolog 2 protein 99.5 3.3E-13 1.1E-17 111.6 12.7 126 251-381 13-140 (193)
136 4gt6_A Cell surface protein; l 99.5 8.4E-12 2.9E-16 115.6 23.3 309 42-376 75-387 (394)
137 2o6r_A Variable lymphocyte rec 99.5 6.6E-13 2.2E-17 108.4 13.3 128 250-381 9-138 (177)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-13 5E-18 112.1 8.7 128 295-425 17-151 (176)
139 3g39_A Variable lymphocyte rec 99.4 9.4E-13 3.2E-17 106.5 11.3 103 300-403 12-115 (170)
140 4b8c_D Glucose-repressible alc 99.4 6.2E-14 2.1E-18 139.5 4.7 120 264-387 216-336 (727)
141 4b8c_D Glucose-repressible alc 99.4 4.1E-13 1.4E-17 133.6 10.2 175 248-428 173-355 (727)
142 1ds9_A Outer arm dynein; leuci 99.4 1.5E-15 5.3E-20 126.5 -7.5 111 267-382 43-155 (198)
143 2r9u_A Variable lymphocyte rec 99.4 3.3E-12 1.1E-16 103.6 11.5 103 300-403 15-118 (174)
144 3un9_A NLR family member X1; l 99.4 1.3E-14 4.4E-19 132.6 -3.3 133 272-404 101-253 (372)
145 3un9_A NLR family member X1; l 99.4 3.5E-14 1.2E-18 129.8 -1.3 157 271-427 71-252 (372)
146 4h09_A Hypothetical leucine ri 99.3 1E-10 3.5E-15 107.7 21.2 136 247-387 216-352 (379)
147 4h09_A Hypothetical leucine ri 99.3 1.2E-10 4E-15 107.3 20.8 316 74-417 42-359 (379)
148 1ds9_A Outer arm dynein; leuci 99.3 4.6E-14 1.6E-18 117.5 -3.0 133 242-381 43-186 (198)
149 3g39_A Variable lymphocyte rec 99.3 4.6E-11 1.6E-15 96.5 11.6 106 274-383 11-118 (170)
150 2r9u_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 94.8 12.2 106 274-383 14-121 (174)
151 2ra8_A Uncharacterized protein 99.1 7.3E-11 2.5E-15 106.8 7.0 179 222-404 106-321 (362)
152 2ifg_A High affinity nerve gro 99.1 6.4E-10 2.2E-14 101.1 10.7 102 302-403 13-116 (347)
153 2ifg_A High affinity nerve gro 98.9 3.2E-09 1.1E-13 96.4 10.7 104 275-382 11-118 (347)
154 2ra8_A Uncharacterized protein 98.9 3E-09 1E-13 96.2 8.6 188 169-378 133-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.8 1.3E-09 4.4E-14 89.1 0.9 111 292-402 31-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 4.6E-09 1.6E-13 85.9 3.0 84 296-379 64-163 (185)
157 3e4g_A ATP synthase subunit S, 98.6 4.1E-09 1.4E-13 83.8 -0.1 84 319-402 61-151 (176)
158 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.2E-12 73.9 4.6 85 53-138 60-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 2.1E-07 7.3E-12 79.8 2.2 80 340-420 167-257 (267)
160 3rw6_A Nuclear RNA export fact 97.9 7E-06 2.4E-10 70.4 4.9 64 76-140 168-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 5E-06 1.7E-10 67.4 2.0 82 295-376 39-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.9E-05 6.5E-10 63.9 3.9 56 297-352 70-135 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0027 9.3E-08 47.8 6.7 56 346-403 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.011 3.6E-07 44.5 6.6 57 322-380 11-68 (130)
165 2lz0_A Uncharacterized protein 87.3 0.48 1.6E-05 33.4 3.3 45 66-111 8-52 (100)
166 2lz0_A Uncharacterized protein 81.2 1.6 5.3E-05 30.7 3.7 47 330-377 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.6e-42 Score=343.81 Aligned_cols=91 Identities=35% Similarity=0.569 Sum_probs=83.2
Q ss_pred hhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCC
Q 042919 338 GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSL 416 (428)
Q Consensus 338 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 416 (428)
.+..+++|+.|++++|.+++.+|..+++++.|+.|+|++|++++.+|..+ .+++|+.|++++|++++..|..++.+++|
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L 706 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 44556789999999999998999999999999999999999999999888 89999999999999999999999999999
Q ss_pred CEEECCCCccCC
Q 042919 417 TVLDLRDNEFSG 428 (428)
Q Consensus 417 ~~L~l~~~~~~~ 428 (428)
+.|++++|+++|
T Consensus 707 ~~L~ls~N~l~g 718 (768)
T 3rgz_A 707 TEIDLSNNNLSG 718 (768)
T ss_dssp SEEECCSSEEEE
T ss_pred CEEECcCCcccc
Confidence 999999999886
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-40 Score=326.36 Aligned_cols=394 Identities=21% Similarity=0.203 Sum_probs=253.1
Q ss_pred ceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCC
Q 042919 24 SITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS 103 (428)
Q Consensus 24 ~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 103 (428)
.++++.+... .++.+.+.+|+++++|++|++++|.+....|..|.++++|++|++++|.+....+..++++++
T Consensus 34 ~l~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 34 STECLEFSFN-------VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TCCEEECTTC-------CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred cCcEEEccCC-------ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 4566766652 255666788999999999999999998888888999999999999999998777888999999
Q ss_pred CcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc-ccCCCCCCCcCCccEEEcCCCCCccc-hhHhhhCCCcc--E
Q 042919 104 LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNCSLQAL-PSILLQQLDLR--F 179 (428)
Q Consensus 104 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~--~ 179 (428)
|++|++++|.+.++.+ ..++.+++|++|++++|.+.. ....+... ++|++|++++|.+..+ +..+..+++|+ .
T Consensus 107 L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~ 183 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGFPT--EKLKVLDFQNNAIHYLSKEDMSSLQQATNLS 183 (606)
T ss_dssp CCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCCCTTCCC--TTCCEEECCSSCCCEECHHHHHTTTTCCSEE
T ss_pred ccEeeccccCcccCCc-chhccCCcccEEECCCCcccccCcccccCC--cccCEEEcccCcccccChhhhhhhcccceeE
Confidence 9999999999887633 468899999999999988755 33444443 3599999999988766 56677788887 7
Q ss_pred EEccCCcCCCCCchh-----------------------------------------------------------------
Q 042919 180 IDLSHNKLQGIFPSW----------------------------------------------------------------- 194 (428)
Q Consensus 180 L~l~~~~~~~~~~~~----------------------------------------------------------------- 194 (428)
|++++|.+....+..
T Consensus 184 L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred EecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 777777654332211
Q ss_pred ---------hhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCC-
Q 042919 195 ---------LLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRI- 264 (428)
Q Consensus 195 ---------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 264 (428)
.+..+++|++|++++|.+...+.....+++|++|++++|.+.+..+..+.. +++|++|++++|.+....
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCC
T ss_pred CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccc
Confidence 124456666666666666655555556666667777666665333333333 566666666666554222
Q ss_pred CccccCCCCCCEEECcCcccCCCCc-hhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCccch-hhhh
Q 042919 265 PSSMSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQ-DGLS 340 (428)
Q Consensus 265 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-~~l~ 340 (428)
+..+..+++|++|++++|.+.+... ...+..+++|+.|++++|.+.... .+..+++|++|++++|.+.+..+ ..+.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 2335556666666666665542110 222445556666666655554332 24455556666665555543332 2255
Q ss_pred cCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCC---CCcc-ccccCceEEccCCcCCccCCcccccCCCC
Q 042919 341 KATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV---PSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSL 416 (428)
Q Consensus 341 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~---~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 416 (428)
.+++|+.|++++|.+++..+..+..+++|++|++++|++++.. +..+ .+++|+.|++++|.+.+..|..|+.+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 5566666666666665555555666666666666666655421 1222 55666666666666665556666666666
Q ss_pred CEEECCCCccCC
Q 042919 417 TVLDLRDNEFSG 428 (428)
Q Consensus 417 ~~L~l~~~~~~~ 428 (428)
+.|++++|+++|
T Consensus 503 ~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 503 NHVDLSHNRLTS 514 (606)
T ss_dssp CEEECCSSCCCG
T ss_pred CEEECCCCccCc
Confidence 666666666553
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-41 Score=329.55 Aligned_cols=395 Identities=24% Similarity=0.209 Sum_probs=242.7
Q ss_pred cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919 23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK 102 (428)
Q Consensus 23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 102 (428)
..++++.+.. | .+....|.+|+++++|++|++++|.+.+..|..|.++++|++|++++|.+....+..+.+++
T Consensus 57 ~~L~~L~Ls~-n------~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 57 INLTFLDLTR-C------QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTCSEEECTT-C------CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred ccceEEECCC-C------ccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 4566666655 2 24556667788888888888888887766677777888888888888877765566677777
Q ss_pred CCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccc--------------------------c-CCCCC-------
Q 042919 103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIE--------------------------T-EEFPG------- 148 (428)
Q Consensus 103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------------------------~-~~~~~------- 148 (428)
+|++|++++|.+.++..+. +..+++|++|++++|.+... . ..+..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 7777777777766543222 22255555555554433211 0 00000
Q ss_pred ------------------------------------------------------------------CCcCCccEEEcCCC
Q 042919 149 ------------------------------------------------------------------LPEYQLKALNLRNC 162 (428)
Q Consensus 149 ------------------------------------------------------------------~~~~~L~~L~l~~~ 162 (428)
...++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 00123444555555
Q ss_pred CCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc--ccCCCCCCCccEEecCCCccccCC-
Q 042919 163 SLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN--FQLPSSKHDLLRLDISHNKFSCQL- 239 (428)
Q Consensus 163 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~- 239 (428)
.+..+|..+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+... ......+++|++|++++|.+.+..
T Consensus 289 ~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred ccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccC
Confidence 44445444444555555555555544332222 23455555555555544321 112345566666666666654322
Q ss_pred -CchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC
Q 042919 240 -PGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP 316 (428)
Q Consensus 240 -~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~ 316 (428)
+..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+..... +.
T Consensus 368 ~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 368 CNLQLRN-LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp STTTTTT-CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred cchhccc-CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 223333 56666666666666555556666677777777777766544444445666777777777776665433 56
Q ss_pred CCCCcceeecccCccCcc---chhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919 317 NSTNLCWLYLNNNHFSGK---IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL 392 (428)
Q Consensus 317 ~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L 392 (428)
.+++|++|++++|.+.+. ....+..+++|+.|++++|.+++..|..+.++++|+.|++++|++++..+..+ .+++|
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 677777777777776542 22456677777777777777776667777777777777777777777666666 67777
Q ss_pred ceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 393 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
.|++++|++++..|..+..+++|+.|++++||+++
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 77777777776667777777788888888887654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-41 Score=339.45 Aligned_cols=375 Identities=31% Similarity=0.431 Sum_probs=223.1
Q ss_pred ccccCCCCCcEEeccCCcCCCCchH--hhhcCCCCCEEEccCCccCcchhhhh-ccCCCCcEEeCCCCccCCccccc--c
Q 042919 48 TGICELKNLVELDLSKNNLYGHLSP--CLSNLTHIKVLDLSSNQLTGNLQSVI-ANIKSLEYLSLDDNNFEGLFSFN--S 122 (428)
Q Consensus 48 ~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~--~ 122 (428)
+.++++++|++|++++|.+.+..|. .+.++++|++|++++|.+....+..+ .++++|++|++++|.+.+..+.. .
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 173 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVL 173 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhh
Confidence 6788888888888888888776776 78888888888888887765555443 67788888888888776553321 1
Q ss_pred ccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCC
Q 042919 123 LKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKL 202 (428)
Q Consensus 123 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 202 (428)
+.++++|++|++++|.+...... . ...+|++|++++|.+......+..+++|++|++++|.+....+..+ ..+++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~-~--~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L 249 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDV-S--RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI-STCTEL 249 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBC-T--TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT-TTCSSC
T ss_pred hccCCCCCEEECCCCcccccCCc-c--cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH-hcCCCC
Confidence 66777777877777766433222 2 2234777888777775433337777777888887777775555544 567777
Q ss_pred CEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCc
Q 042919 203 DTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282 (428)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (428)
++|++++|.+.+..... .+++|++|++++|.+.+.++..+...+++|++|++++|.+.+..+..+.++++|++|++++|
T Consensus 250 ~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp CEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 77777777765433222 55666666666666665555555543466666666666665555555666666666666666
Q ss_pred ccCCCCchhhhcCCCCCCEEeCCCcccccc-------------------------cc--cCC--CCCcceeecccCccCc
Q 042919 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGE-------------------------VV--FPN--STNLCWLYLNNNHFSG 333 (428)
Q Consensus 283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------------~~--~~~--~~~L~~L~l~~~~~~~ 333 (428)
.+.+.++...+..+++|+.|++++|.+.+. .. +.. +++|++|++++|.+++
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 655455544445555555555555544311 00 111 3445555555555544
Q ss_pred cchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccccc
Q 042919 334 KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRR 412 (428)
Q Consensus 334 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 412 (428)
..+..+.++++|+.|++++|.+++..|..+.++++|+.|++++|.+++..+..+ .+++|+.|++++|++.+..|..++.
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 444555555555555555555554445555555555555555554444444433 4444444444444444444444444
Q ss_pred CCCCCEEECCCCccC
Q 042919 413 SLSLTVLDLRDNEFS 427 (428)
Q Consensus 413 ~~~L~~L~l~~~~~~ 427 (428)
+++|+.|++++|+++
T Consensus 489 l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 489 CTNLNWISLSNNRLT 503 (768)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEEccCCccC
Confidence 444444444444443
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-39 Score=320.24 Aligned_cols=380 Identities=21% Similarity=0.187 Sum_probs=256.2
Q ss_pred eeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccc
Q 042919 42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFN 121 (428)
Q Consensus 42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 121 (428)
+..+.|.+|.++++|++|++++|.+....|..|.++++|++|++++|.+....+..++++++|++|++++|.+.+...+.
T Consensus 68 l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~ 147 (606)
T 3vq2_A 68 IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH
Confidence 44555666777777777777777777666777777777777777777776555556777777777777777776544356
Q ss_pred cccCCCCCcEEEccCCcccccc-CCCCC-------------------------CCcCCccEEEcCCCCCc----------
Q 042919 122 SLKNHSKLQVFKLSNSLVKIET-EEFPG-------------------------LPEYQLKALNLRNCSLQ---------- 165 (428)
Q Consensus 122 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~-------------------------~~~~~L~~L~l~~~~~~---------- 165 (428)
.++++++|++|++++|.+.... ..+.. ....+|+++++++|.+.
T Consensus 148 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 227 (606)
T 3vq2_A 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227 (606)
T ss_dssp GGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHT
T ss_pred hHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcc
Confidence 6777888888888776653221 11100 01113455555444321
Q ss_pred -------------------------------------------------cchhHhhhCCCccEEEccCCcCCCCCchhhh
Q 042919 166 -------------------------------------------------ALPSILLQQLDLRFIDLSHNKLQGIFPSWLL 196 (428)
Q Consensus 166 -------------------------------------------------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 196 (428)
.++. +..+++|+.|+++++.+... + .+
T Consensus 228 l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~--~l 303 (606)
T 3vq2_A 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E--DV 303 (606)
T ss_dssp TTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C--CC
T ss_pred ccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h--hc
Confidence 0011 22334455555555544322 2 12
Q ss_pred hcCCCCCEEEecCCccCCcc--------------------cCCCCCCCccEEecCCCccccC--CCchhhhcCCCCcEEE
Q 042919 197 QNNTKLDTLYLLNNSLSGNF--------------------QLPSSKHDLLRLDISHNKFSCQ--LPGNMGKILPELLSLN 254 (428)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~ 254 (428)
..+++|+.|++++|.+.... .....+++|+.|++++|.+.+. .+..+.. +++|++|+
T Consensus 304 ~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~ 382 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLD 382 (606)
T ss_dssp CTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEE
T ss_pred cccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeE
Confidence 34444455554444442221 1233566777777777766533 1344433 77888888
Q ss_pred ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccC
Q 042919 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFS 332 (428)
Q Consensus 255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~ 332 (428)
+++|.+.. .+..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+....+ +..+++|++|++++|.+.
T Consensus 383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 88887763 456777888888888888888755554557788888888888888776443 778888999999888887
Q ss_pred c-cchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccc
Q 042919 333 G-KIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL 410 (428)
Q Consensus 333 ~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 410 (428)
+ ..+..+..+++|+.|++++|.+++..|..+.++++|+.|++++|++++..+..+ .+++|+.|++++|+++ .+|..+
T Consensus 462 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~ 540 (606)
T 3vq2_A 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGIL 540 (606)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCG
T ss_pred CcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhH
Confidence 6 356778888889999999998887778888888899999999998887777777 7888999999999888 666668
Q ss_pred ccCC-CCCEEECCCCccCC
Q 042919 411 RRSL-SLTVLDLRDNEFSG 428 (428)
Q Consensus 411 ~~~~-~L~~L~l~~~~~~~ 428 (428)
..++ +|+.|++++||+++
T Consensus 541 ~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GGSCTTCCEEECCSCCCCC
T ss_pred hhhcccCcEEEccCCCccc
Confidence 8886 59999999988764
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-39 Score=321.01 Aligned_cols=348 Identities=20% Similarity=0.259 Sum_probs=282.6
Q ss_pred chHhhhcCCCCCEEEccCCccCcc-----------------hhhhhc--cCCCCcEEeCCCCccCCccccccccCCCCCc
Q 042919 70 LSPCLSNLTHIKVLDLSSNQLTGN-----------------LQSVIA--NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ 130 (428)
Q Consensus 70 ~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 130 (428)
+|..+.++++|++|++++|.+++. .|..+. ++++|++|++++|.+.+..+ ..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCC
Confidence 567788899999999999988864 788877 89999999999998776544 6788899999
Q ss_pred EEEccCCc-ccc--ccCCCCCC----CcCCccEEEcCCCCCccchh--HhhhCCCccEEEccCCcCCCCCchhhhhcCCC
Q 042919 131 VFKLSNSL-VKI--ETEEFPGL----PEYQLKALNLRNCSLQALPS--ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTK 201 (428)
Q Consensus 131 ~L~l~~~~-~~~--~~~~~~~~----~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 201 (428)
+|++++|. +.. .+..+..+ ..++|++|++++|.+..+|. .+..+++|+.|++++|.+...++ . +..+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence 99999886 542 23222221 11359999999999988888 88899999999999998875566 3 467889
Q ss_pred CCEEEecCCccCCcccCCCCCCC-ccEEecCCCccccCCCchhhhc-CCCCcEEEccCCCCCCCCCcccc-------CCC
Q 042919 202 LDTLYLLNNSLSGNFQLPSSKHD-LLRLDISHNKFSCQLPGNMGKI-LPELLSLNLSENGFEGRIPSSMS-------EMK 272 (428)
Q Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~-------~~~ 272 (428)
|+.|++++|.+...+.....+++ |+.|++++|.+. .++..+... +++|+.|++++|.+.+..|..+. .++
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 99999999988866566677888 999999999988 677655431 34899999999999887777777 788
Q ss_pred CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-------CCCCcceeecccCccCccchhhhh--c
Q 042919 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-------NSTNLCWLYLNNNHFSGKIQDGLS--K 341 (428)
Q Consensus 273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~ 341 (428)
+|++|++++|.+. .++...+..+++|+.|++++|.+..... +. .+++|++|++++|.++ ..+..+. .
T Consensus 434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 9999999999998 7888778889999999999999884333 22 2339999999999998 4555665 8
Q ss_pred CCCCcEEEccCCcccccCCcccCCCCCCcEEeC------CCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCC
Q 042919 342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDI------SENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSL 414 (428)
Q Consensus 342 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L------~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~ 414 (428)
+++|+.|++++|.+++ +|..+.++++|+.|++ ++|++.+..+..+ .+++|+.|++++|++. .+|..+. +
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 587 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--P 587 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--T
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--C
Confidence 9999999999999995 8889999999999999 5677787888777 8999999999999995 7787765 7
Q ss_pred CCCEEECCCCccC
Q 042919 415 SLTVLDLRDNEFS 427 (428)
Q Consensus 415 ~L~~L~l~~~~~~ 427 (428)
+|+.|++++|+++
T Consensus 588 ~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 588 NISVLDIKDNPNI 600 (636)
T ss_dssp TCCEEECCSCTTC
T ss_pred cCCEEECcCCCCc
Confidence 9999999999864
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=317.43 Aligned_cols=391 Identities=25% Similarity=0.298 Sum_probs=268.4
Q ss_pred ceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCC
Q 042919 24 SITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS 103 (428)
Q Consensus 24 ~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 103 (428)
.++++.+... .++.+.+.+|.++++|++|++++|.+.+..+..|.++++|++|+++++.+....+.+|.++++
T Consensus 29 ~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 29 STKNLDLSFN-------PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SCCEEECCSC-------CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccEEEccCC-------ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 4566666541 244445566777777777777777777666666777777777777777776555567777777
Q ss_pred CcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc--ccCCCCCCCcCCccEEEcCCCCCccc-hhHhhhCCCc---
Q 042919 104 LEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI--ETEEFPGLPEYQLKALNLRNCSLQAL-PSILLQQLDL--- 177 (428)
Q Consensus 104 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L--- 177 (428)
|++|++++|.+..+.. ..++.+++|++|++++|.+.. .+..+...+ +|++|++++|.+..+ +..+..+++|
T Consensus 102 L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~~ 178 (570)
T 2z63_A 102 LQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--NLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (570)
T ss_dssp CCEEECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT--TCCEEECTTSCCCEECGGGGHHHHTCTTC
T ss_pred cccccccccccccCCC-ccccccccccEEecCCCccceecChhhhcccC--CCCEEeCcCCccceecHHHccchhccchh
Confidence 7777777777666532 236677777777777766543 233444443 377777777766544 2334444444
Q ss_pred -cEEEccCCcCCCCCch---------------------------------------------------------------
Q 042919 178 -RFIDLSHNKLQGIFPS--------------------------------------------------------------- 193 (428)
Q Consensus 178 -~~L~l~~~~~~~~~~~--------------------------------------------------------------- 193 (428)
+.+++++|.+....+.
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 4555555443321111
Q ss_pred -----------------hhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhh------------
Q 042919 194 -----------------WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMG------------ 244 (428)
Q Consensus 194 -----------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------ 244 (428)
..+..+++|+.|+++++.+.........+ +|+.|++++|.+. .++....
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCB
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCc
Confidence 11233456666666666555443333333 5555555555443 2222100
Q ss_pred -------hcCCCCcEEEccCCCCCCCC--CccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--
Q 042919 245 -------KILPELLSLNLSENGFEGRI--PSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV-- 313 (428)
Q Consensus 245 -------~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-- 313 (428)
..+++|++|++++|.+.... +..+..+++|++|++++|.+. ..+.. +..+++|+.|++++|.+....
T Consensus 337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccch
Confidence 23567777777777665332 455667788888888888766 33333 667888888888888877653
Q ss_pred -ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc-ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccc
Q 042919 314 -VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY-GQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLS 390 (428)
Q Consensus 314 -~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~ 390 (428)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..+..+ .++
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 3778899999999999988778888899999999999999987 4678889999999999999999998878777 889
Q ss_pred cCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 391 SLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+|+.|++++|++++..+..+..+++|+.|++++|+++|
T Consensus 495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 99999999999997778889999999999999999886
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.5e-39 Score=316.40 Aligned_cols=386 Identities=21% Similarity=0.194 Sum_probs=271.1
Q ss_pred cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919 23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK 102 (428)
Q Consensus 23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 102 (428)
..++++.+... .+....+.+|.++++|++|++++|.+++..+..|.++++|++|++++|.+....|..+++++
T Consensus 32 ~~l~~L~Ls~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFN-------PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTS-------CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCC-------CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 45667776652 25566677899999999999999999877788899999999999999999877788899999
Q ss_pred CCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc--ccCCCCCCCcCCccEEEcCCCCCccch-hHhhhC-----
Q 042919 103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI--ETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQ----- 174 (428)
Q Consensus 103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~----- 174 (428)
+|++|++++|.+.+..+ ..++++++|++|++++|.+.. .+..+...+ +|++|++++|.+..++ ..+..+
T Consensus 105 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 105 SLENLVAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT--NLVHVDLSYNYIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TCCEEECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT--TCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred cCCEEEccCCccccccc-cccCCCCCCCEEeCCCCcccceechHhHhhcC--CCCEEEccCCcceecChhhhhhhhcccc
Confidence 99999999999887643 468999999999999988753 345555554 4888888888775442 222222
Q ss_pred ----------------------CCccEEEccCCcCCC-------------------------------------------
Q 042919 175 ----------------------LDLRFIDLSHNKLQG------------------------------------------- 189 (428)
Q Consensus 175 ----------------------~~L~~L~l~~~~~~~------------------------------------------- 189 (428)
.+|+.|++++|.+..
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 245555555554320
Q ss_pred ---------------CCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919 190 ---------------IFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN 254 (428)
Q Consensus 190 ---------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 254 (428)
..+. +..+++|+.|+++++.+.... ....+++|++|++++|.+ +.++. + .+++|++|+
T Consensus 262 ~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~ 334 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLT 334 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEE
T ss_pred cHhheeccccccccccccc--cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-ccccc-C--CCCccceee
Confidence 0011 245688999999999887655 666788999999999988 36663 2 366666666
Q ss_pred ccCCCCC----------------------CC--CCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919 255 LSENGFE----------------------GR--IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310 (428)
Q Consensus 255 l~~~~~~----------------------~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (428)
+++|... .. .+..+..+++|++|++++|.+. .++ ..+..+++|+.|++++|.+.
T Consensus 335 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp EESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEE
T ss_pred ccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccC
Confidence 6666332 11 1233344444444444444443 222 22445566666666666655
Q ss_pred ccc---ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc-cCCcccCCCCCCcEEeCCCCcCCcCCCCc
Q 042919 311 GEV---VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG-QIPPWFGNLSGLQFLDISENQLCGSVPSS 386 (428)
Q Consensus 311 ~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 386 (428)
... .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..++.+++|+.|++++|++++..+..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 492 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh
Confidence 442 35566777777777777766666677777778888888877775 35777778888888888888887776666
Q ss_pred c-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 387 F-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 387 ~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
+ .+++|++|++++|++.+..|..++.+++|+.|++++|+|+
T Consensus 493 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 6 7788888888888887777788888888888888888775
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.1e-38 Score=304.91 Aligned_cols=386 Identities=22% Similarity=0.233 Sum_probs=269.9
Q ss_pred cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919 23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK 102 (428)
Q Consensus 23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 102 (428)
..++++.+.. + .+....+.++.++++|++|++++|.+.+..+..|.++++|++|++++|.+....+..+++++
T Consensus 26 ~~L~~L~Ls~-n------~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSF-N------KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCS-S------CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcC-C------ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 4577777766 2 24455667888999999999999999877778899999999999999998877777789999
Q ss_pred CCcEEeCCCCccCCccccccccCCCCCcEEEccCCc-cc-cccCCCCCCCcCCccEEEcCCCCCcc-chhHhhhCCCccE
Q 042919 103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSL-VK-IETEEFPGLPEYQLKALNLRNCSLQA-LPSILLQQLDLRF 179 (428)
Q Consensus 103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~ 179 (428)
+|++|++++|.+.+...+..++.+++|++|+++++. .. .....+...+ +|++|++++|.+.. .|..+..+++|+.
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT--SLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC--EEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc--ccCeeeccCCcccccChhhhhccccCce
Confidence 999999999988865445678889999999998876 32 2233455544 48888888877744 4555665556666
Q ss_pred EEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc----cCC------------------------------------
Q 042919 180 IDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF----QLP------------------------------------ 219 (428)
Q Consensus 180 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~------------------------------------ 219 (428)
|+++++... ..+..++..+++|+.|++++|.+.+.. ...
T Consensus 177 L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 177 LTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred EecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 666555543 233333344555555555555443310 000
Q ss_pred ----------------------CC-----------------------------CCCccEEecCCCccccCCCchhhhcCC
Q 042919 220 ----------------------SS-----------------------------KHDLLRLDISHNKFSCQLPGNMGKILP 248 (428)
Q Consensus 220 ----------------------~~-----------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~ 248 (428)
.. .++|+.++++++.+. .++..++..++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCc
Confidence 11 123445555555544 45555544477
Q ss_pred CCcEEEccCCCCCCCCC---ccccCCCCCCEEECcCcccCCCCch--hhhcCCCCCCEEeCCCcccccccc-cCCCCCcc
Q 042919 249 ELLSLNLSENGFEGRIP---SSMSEMKRLESLDLSSNNFSGELPR--QFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLC 322 (428)
Q Consensus 249 ~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~ 322 (428)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+. .++. ..+..+++|+.|++++|.+..... +..+++|+
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~ 413 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence 77778877777764332 23566777888888877775 3332 346677788888888887765433 56677888
Q ss_pred eeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcC
Q 042919 323 WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAF 402 (428)
Q Consensus 323 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 402 (428)
+|++++|.++..... + .++|+.|++++|++++. ...+++|++|++++|+++. .+....+++|+.|++++|++
T Consensus 414 ~L~Ls~N~l~~l~~~-~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~-ip~~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 414 FLNLSSTGIRVVKTC-I--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQL 485 (549)
T ss_dssp EEECTTSCCSCCCTT-S--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSS-CCCGGGCTTCCEEECCSSCC
T ss_pred EEECCCCCcccccch-h--cCCceEEECCCCChhhh----cccCChhcEEECCCCccCc-CCCcccCccCCEEecCCCcc
Confidence 888888877643222 1 35788888888887743 2578999999999999984 44444789999999999999
Q ss_pred CccCCcccccCCCCCEEECCCCccCC
Q 042919 403 NGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 403 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
++..|..++.+++|+.|++++|+++|
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCcCHHHHhcCcccCEEEecCCCccC
Confidence 98888889999999999999999876
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-37 Score=308.69 Aligned_cols=171 Identities=26% Similarity=0.254 Sum_probs=103.4
Q ss_pred CCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc------------------------
Q 042919 258 NGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV------------------------ 313 (428)
Q Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------------------------ 313 (428)
|.+.+..+..+..+++|++|++++|.+.+.++...+.++++|+.|++++|.+....
T Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 33333334455566666666666666554444444555666666666665543211
Q ss_pred ----ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC--------CcccCCCCCCcEEeCCCCcCCc
Q 042919 314 ----VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI--------PPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 314 ----~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~--------~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++... +..+.++++|+.|++++|+++.
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~ 550 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC
T ss_pred cCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC
Confidence 1445556666666666666555555666666666666666665321 1125666677777777777665
Q ss_pred CCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 382 SVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 382 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
..+..+ .+++|+.|++++|+++...+..|..+++|+.|++++|+++|
T Consensus 551 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 554445 67777777777777775555666777777777777777764
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-37 Score=312.40 Aligned_cols=346 Identities=21% Similarity=0.251 Sum_probs=286.5
Q ss_pred chHhhhcCCCCCEEEccCCccCc-----------------chhhhhc--cCCCCcEEeCCCCccCCccccccccCCCCCc
Q 042919 70 LSPCLSNLTHIKVLDLSSNQLTG-----------------NLQSVIA--NIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQ 130 (428)
Q Consensus 70 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 130 (428)
+|..+.++++|+.|++++|.+.+ ..|..+. ++++|++|++++|.+.+..+ ..+.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCC
Confidence 67789999999999999999986 2777776 99999999999998877655 7899999999
Q ss_pred EEEccCCc-ccc--ccCCCC-----CCCcCCccEEEcCCCCCccchh--HhhhCCCccEEEccCCcCCCCCchhhhhcCC
Q 042919 131 VFKLSNSL-VKI--ETEEFP-----GLPEYQLKALNLRNCSLQALPS--ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNT 200 (428)
Q Consensus 131 ~L~l~~~~-~~~--~~~~~~-----~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 200 (428)
+|++++|. +.. .+..+. ....++|+.|++++|.+..+|. .+..+++|+.|++++|.+. .++ .+..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCC
Confidence 99999987 542 222111 1122359999999999999998 8999999999999999988 666 357899
Q ss_pred CCCEEEecCCccCCcccCCCCCCC-ccEEecCCCccccCCCchhhhcC--CCCcEEEccCCCCCCCCCc---ccc--CCC
Q 042919 201 KLDTLYLLNNSLSGNFQLPSSKHD-LLRLDISHNKFSCQLPGNMGKIL--PELLSLNLSENGFEGRIPS---SMS--EMK 272 (428)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~l~--~~~ 272 (428)
+|+.|++++|.+...+.....+++ |+.|++++|.+. .++..+.. . ++|+.|++++|.+.+..+. .+. .++
T Consensus 596 ~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 999999999999876666778888 999999999998 77765543 3 3499999999998765442 222 345
Q ss_pred CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-------CCCCcceeecccCccCccchhhhh--c
Q 042919 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-------NSTNLCWLYLNNNHFSGKIQDGLS--K 341 (428)
Q Consensus 273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-------~~~~L~~L~l~~~~~~~~~~~~l~--~ 341 (428)
+|++|++++|.+. .++...+..+++|+.|++++|.+..... +. ++++|++|++++|.++ ..+..+. .
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 8999999999998 7888888889999999999999885433 22 2349999999999998 4556665 8
Q ss_pred CCCCcEEEccCCcccccCCcccCCCCCCcEEeCCC------CcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCC
Q 042919 342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISE------NQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSL 414 (428)
Q Consensus 342 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~------~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~ 414 (428)
+++|+.|++++|.+++ +|..+.++++|+.|+|++ |.+.+..+..+ .+++|+.|++++|++ +.+|..+. +
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~ 827 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--P 827 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--S
T ss_pred CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--C
Confidence 9999999999999995 788899999999999976 77787888777 899999999999999 48887765 6
Q ss_pred CCCEEECCCCccC
Q 042919 415 SLTVLDLRDNEFS 427 (428)
Q Consensus 415 ~L~~L~l~~~~~~ 427 (428)
+|+.|++++|++.
T Consensus 828 ~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 828 QLYILDIADNPNI 840 (876)
T ss_dssp SSCEEECCSCTTC
T ss_pred CCCEEECCCCCCC
Confidence 9999999999874
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-36 Score=301.05 Aligned_cols=392 Identities=25% Similarity=0.277 Sum_probs=237.8
Q ss_pred cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCC
Q 042919 23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIK 102 (428)
Q Consensus 23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 102 (428)
..++++.+.. + .+..+.+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+.+|++++
T Consensus 25 ~~l~~L~Ls~-n------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTH-N------QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCS-S------CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCC-C------CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 4577777766 2 13344456788999999999999999888888899999999999999988865555788999
Q ss_pred CCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccc-cCCCCCCCcCCccEEEcCCCCCccchhH-h--hhCCCcc
Q 042919 103 SLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLQALPSI-L--LQQLDLR 178 (428)
Q Consensus 103 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~--~~~~~L~ 178 (428)
+|++|++++|.+.++ ++..++++++|++|++++|.+... +..+...+ +|++|++++|.+..++.. + ..+++|+
T Consensus 98 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 98 NLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE--NLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCSEEECCSSCCCCC-CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT--TCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCCEEECCCCccCcc-ChhHccccCCCCEEECCCCcccccCchhhcccc--cCCEEEccCCcccccCHHHhhcccccccc
Confidence 999999999988766 335688899999999998876443 33444444 499999999888766543 2 2446888
Q ss_pred EEEccCCcCCCCCchhhhhcC---------------------------CCCCEEEecCCccCCccc-CCCCC--CCccEE
Q 042919 179 FIDLSHNKLQGIFPSWLLQNN---------------------------TKLDTLYLLNNSLSGNFQ-LPSSK--HDLLRL 228 (428)
Q Consensus 179 ~L~l~~~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~-~~~~~--~~L~~L 228 (428)
.|++++|.+....+..+ ..+ ++|+.|+++++.+.+... ....+ ++|++|
T Consensus 175 ~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred EEECCCCcccccChhhh-hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 88888887775544332 122 445555555555443211 11222 236666
Q ss_pred ecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCcc---------------------------------ccCCCCCC
Q 042919 229 DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS---------------------------------MSEMKRLE 275 (428)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---------------------------------l~~~~~L~ 275 (428)
++++|.+.+..+..+.. +++|++|++++|.+.+..+.. +..+++|+
T Consensus 254 ~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp ECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred ECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 66666555333333332 556666666655554333333 44455566
Q ss_pred EEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc----ccC--CCCCcceeecccCccCccchhhhhcCCCCcEEE
Q 042919 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFP--NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELD 349 (428)
Q Consensus 276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 349 (428)
+|++++|.+. .++...+..+++|+.|++++|.+.... .+. ..++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 333 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 333 HLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp EEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 6666666555 233334455566666666554321100 000 012333333333444333344444445555555
Q ss_pred ccCCccc-------------------------ccCCcccCCCCCCcEEeCCCCcCC--cCCCCcc-ccccCceEEccCCc
Q 042919 350 LSNNMLY-------------------------GQIPPWFGNLSGLQFLDISENQLC--GSVPSSF-NLSSLRRLYMHMNA 401 (428)
Q Consensus 350 l~~~~i~-------------------------~~~~~~~~~~~~L~~L~L~~~~~~--~~~~~~~-~~~~L~~L~l~~~~ 401 (428)
+++|.++ +..+..+..+++|+.|++++|.+. +..+..+ .+++|+.|++++|.
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 5555444 333344444445555555554443 2334444 66778888888888
Q ss_pred CCccCCcccccCCCCCEEECCCCccC
Q 042919 402 FNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 402 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
++...+..|..+++|+.|++++|+++
T Consensus 492 l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 492 IANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCcCChhhhccccccCEEeCCCCCcc
Confidence 77666677778888888888888765
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=300.52 Aligned_cols=368 Identities=23% Similarity=0.218 Sum_probs=281.4
Q ss_pred CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK 133 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 133 (428)
+++++|+++++.+++..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+. ++..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCcccccccc
Confidence 5799999999999987788899999999999999999877778899999999999999998776 336789999999999
Q ss_pred ccCCccccccC-CCCCCCcCCccEEEcCCCCCcc--chhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCC----CEEE
Q 042919 134 LSNSLVKIETE-EFPGLPEYQLKALNLRNCSLQA--LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKL----DTLY 206 (428)
Q Consensus 134 l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~ 206 (428)
++++.+...+. .+..++ +|++|++++|.+.. +|..+..+++|++|++++|.+....+..+ ..+++| +.++
T Consensus 107 L~~n~l~~l~~~~~~~l~--~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 107 AVETNLASLENFPIGHLK--TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLD 183 (570)
T ss_dssp CTTSCCCCSTTCSCTTCT--TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEE
T ss_pred ccccccccCCCccccccc--cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhcc
Confidence 99998755433 455444 59999999999865 68999999999999999999886554443 455555 6777
Q ss_pred ecCCccCCcccC--------------------------------------------------------------------
Q 042919 207 LLNNSLSGNFQL-------------------------------------------------------------------- 218 (428)
Q Consensus 207 l~~~~~~~~~~~-------------------------------------------------------------------- 218 (428)
+++|.+......
T Consensus 184 l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred cCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 776655432111
Q ss_pred --------------CCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCcc-----------------
Q 042919 219 --------------PSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSS----------------- 267 (428)
Q Consensus 219 --------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------- 267 (428)
...+++|+.|+++++.+. .++..+.. + +|++|++++|.+.......
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence 123456666666666665 44444433 3 5666666665554211110
Q ss_pred --ccCCCCCCEEECcCcccCCCCc-hhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccch-hhhhcC
Q 042919 268 --MSEMKRLESLDLSSNNFSGELP-RQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQ-DGLSKA 342 (428)
Q Consensus 268 --l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~l~~~ 342 (428)
...+++|++|++++|.+.+... ...+..+++|+.|++++|.+..... +..+++|++|++++|.+.+..+ ..+.++
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence 0355667777777776652210 2335677888888888887765443 7788899999999888876544 467889
Q ss_pred CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC-cCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEE
Q 042919 343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC-GSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLD 420 (428)
Q Consensus 343 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 420 (428)
++|+.|++++|.+++..+..+.++++|+.|++++|.++ +..+..+ .+++|+.|++++|++++..|..+..+++|+.|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 99999999999998788888999999999999999987 4566666 889999999999999988899999999999999
Q ss_pred CCCCccCC
Q 042919 421 LRDNEFSG 428 (428)
Q Consensus 421 l~~~~~~~ 428 (428)
+++|+++|
T Consensus 501 l~~n~l~~ 508 (570)
T 2z63_A 501 MASNQLKS 508 (570)
T ss_dssp CCSSCCSC
T ss_pred CCCCcCCC
Confidence 99999875
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.8e-37 Score=302.52 Aligned_cols=364 Identities=22% Similarity=0.296 Sum_probs=297.7
Q ss_pred CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCc--------------------------------------------
Q 042919 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ-------------------------------------------- 89 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------------------------------------- 89 (428)
.+++.|+++++.+.+.+|..+.++++|++|++++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 467777777777777777777777778888777663
Q ss_pred ----------------------------------cCcchhhhhccCCCCcEEeCCCCccCCc----------------cc
Q 042919 90 ----------------------------------LTGNLQSVIANIKSLEYLSLDDNNFEGL----------------FS 119 (428)
Q Consensus 90 ----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------~~ 119 (428)
+++ +|..++++++|++|++++|.+.+. ..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 333 677899999999999999998872 02
Q ss_pred ccccc--CCCCCcEEEccCCcc-ccccCCCCCCCcCCccEEEcCCCC-Cc--cchhHhhhC------CCccEEEccCCcC
Q 042919 120 FNSLK--NHSKLQVFKLSNSLV-KIETEEFPGLPEYQLKALNLRNCS-LQ--ALPSILLQQ------LDLRFIDLSHNKL 187 (428)
Q Consensus 120 ~~~~~--~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~--~l~~~~~~~------~~L~~L~l~~~~~ 187 (428)
+..++ ++++|++|++++|.. ...+..+..++ +|++|++++|. +. .+|..+..+ ++|++|++++|.+
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP--EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS--SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCC--CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 46777 999999999999875 34455565555 49999999998 76 589988886 8999999999999
Q ss_pred CCCCch-hhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCC-CcEEEccCCCCCCCCC
Q 042919 188 QGIFPS-WLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPE-LLSLNLSENGFEGRIP 265 (428)
Q Consensus 188 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~ 265 (428)
. .++. ..+..+++|+.|++++|.+.+.......+++|++|++++|.+. .++..+.. +++ |++|++++|.+. ..|
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccc
Confidence 8 6665 2347899999999999999843336678899999999999998 77777666 778 999999999998 677
Q ss_pred ccccCCC--CCCEEECcCcccCCCCchhhhc-------CCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCcc
Q 042919 266 SSMSEMK--RLESLDLSSNNFSGELPRQFLS-------GCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGK 334 (428)
Q Consensus 266 ~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~ 334 (428)
..+...+ +|++|++++|.+.+..+.. +. .+++|+.|++++|.+..... +..+++|++|++++|.++..
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 7777654 8999999999988655543 33 56799999999999986554 56789999999999999854
Q ss_pred chhhhhcCC-------CCcEEEccCCcccccCCcccC--CCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEc------c
Q 042919 335 IQDGLSKAT-------SLLELDLSNNMLYGQIPPWFG--NLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYM------H 398 (428)
Q Consensus 335 ~~~~l~~~~-------~L~~L~l~~~~i~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l------~ 398 (428)
....+.... +|+.|++++|.++ .+|..+. .+++|+.|+|++|++++ .+..+ .+++|+.|++ +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 444444333 8999999999999 7888886 99999999999999997 55555 8999999999 5
Q ss_pred CCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 399 MNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 399 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
+|++.+..|..++.+++|+.|++++|+++
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 579 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDIR 579 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcCC
Confidence 67788889999999999999999999984
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=315.60 Aligned_cols=109 Identities=23% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCCCEEEecCCccCCc-ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEE
Q 042919 200 TKLDTLYLLNNSLSGN-FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD 278 (428)
Q Consensus 200 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 278 (428)
++|+.|++++|.+... ......+++|+.|++++|.+.+..+..+.. +++|++|++++|.+....+..+..+++|++|+
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 3455555555544432 122334555556666555555333333322 55566666666655544455555566666666
Q ss_pred CcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919 279 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310 (428)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (428)
+++|.+. .++...+..+++|+.|++++|.+.
T Consensus 345 L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 345 LQKNHIA-IIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCSCCCC-CCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCCC-ccChhhhcCCCCCCEEECCCCCCC
Confidence 6665554 333333445555555555555443
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.8e-36 Score=283.72 Aligned_cols=357 Identities=24% Similarity=0.268 Sum_probs=229.4
Q ss_pred CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCc-chhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEE
Q 042919 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTG-NLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVF 132 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 132 (428)
++|++|++++|.+.+..+..|.++++|++|+++++.+.. ..+..|..+++|++|++++|.+.+. .+..++++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEE
Confidence 679999999999887778888899999999999988763 3356788899999999999988765 33577888889999
Q ss_pred EccCCcccc---ccCCCCCCCcCCccEEEcCCCCCccc-hhH-hhhCCCccEEEccCCcCCCCCchhhhh-cCCCCCEEE
Q 042919 133 KLSNSLVKI---ETEEFPGLPEYQLKALNLRNCSLQAL-PSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQ-NNTKLDTLY 206 (428)
Q Consensus 133 ~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~ 206 (428)
++++|.+.. ....+...+ +|++|++++|.+..+ |.. +..+++|+.|++++|.+....+..+.. ...+++.++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLT--SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCT--TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEE
T ss_pred eCCCCCCCccccCcccccCcc--cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccc
Confidence 888887753 222244444 488888888888665 433 677888888888888877655544321 125677888
Q ss_pred ecCCccCCcccC---------CCCCCCccEEecCCCccccCCCchhhhc--CCCCcEEEccCCCCCCCCCccccCCCCCC
Q 042919 207 LLNNSLSGNFQL---------PSSKHDLLRLDISHNKFSCQLPGNMGKI--LPELLSLNLSENGFEGRIPSSMSEMKRLE 275 (428)
Q Consensus 207 l~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 275 (428)
++++.+...... ...+++|++|++++|.+.+..+..+... .++++.|++++|....... ....++.
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~-- 263 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF-GHTNFKD-- 263 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-TCCSSCC--
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-chhhhcc--
Confidence 888776653322 2244677777887777765555544432 2567777777765432110 0000000
Q ss_pred EEECcCcccCCCCchhhhc--CCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEcc
Q 042919 276 SLDLSSNNFSGELPRQFLS--GCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 351 (428)
Q Consensus 276 ~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 351 (428)
.....+. ..++|+.|++++|.+..... +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 264 ------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 264 ------------PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp ------------CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ------------CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 0000011 23456666666666554332 5556666666666666665555566666666666666
Q ss_pred CCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 352 ~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+|.+++..+..+.++++|+.|++++|++++..+..+ .+++|++|++++|+++...+..+..+++|+.|++++|+++|
T Consensus 332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 666665555666666666666666666665555555 56666666666666665444555666666666666666654
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-35 Score=278.74 Aligned_cols=345 Identities=24% Similarity=0.319 Sum_probs=177.0
Q ss_pred CCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEE
Q 042919 53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVF 132 (428)
Q Consensus 53 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 132 (428)
++++++|++.++.+... + .+..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEE
Confidence 44555555555555422 2 24455555555555555543222 4555555555555555544421 5555555555
Q ss_pred EccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCcc
Q 042919 133 KLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSL 212 (428)
Q Consensus 133 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 212 (428)
++++|.+...+. +...+ +|++|++++|.+..++. +..+++|+.|++++ .+....+ +..+++|+.|++++|.+
T Consensus 118 ~L~~n~l~~~~~-~~~l~--~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~~~~---~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLT--NLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTDLKP---LANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCCCGG-GTTCT--TCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCCCGG---GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCChH-HcCCC--CCCEEECCCCccCCChh-hccCCcccEeecCC-cccCchh---hccCCCCCEEECcCCcC
Confidence 555554433222 22222 35555555555544442 45555555555542 2221111 34555555555555555
Q ss_pred CCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhh
Q 042919 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF 292 (428)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 292 (428)
.... ....+++|++|++++|.+.+..+ +. .+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+ .+.
T Consensus 190 ~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~-- 260 (466)
T 1o6v_A 190 SDIS-VLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP-- 260 (466)
T ss_dssp CCCG-GGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--
T ss_pred CCCh-hhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh--
Confidence 4332 23445556666666555543222 22 255566666666655432 245555666666666665542 222
Q ss_pred hcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEE
Q 042919 293 LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL 372 (428)
Q Consensus 293 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 372 (428)
+..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 44556666666666655555445556666666666665554322 4555666666666666553332 4555666666
Q ss_pred eCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 373 DISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 373 ~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
++++|++++. +....+++|+.|++++|++.+..| +..+++|+.|++++|+++|
T Consensus 337 ~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6666655543 211155666666666666654444 5556666666666665543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=285.45 Aligned_cols=220 Identities=21% Similarity=0.209 Sum_probs=163.1
Q ss_pred CCCEEEecCCccCC-cccCC-----CCCCCccEEecCCCccccCCC-chhhhc--CCCCcEEEccCCCCCCCCCccccCC
Q 042919 201 KLDTLYLLNNSLSG-NFQLP-----SSKHDLLRLDISHNKFSCQLP-GNMGKI--LPELLSLNLSENGFEGRIPSSMSEM 271 (428)
Q Consensus 201 ~L~~L~l~~~~~~~-~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~ 271 (428)
+|+.|++++|.+.+ .+... ..+++|+.++++.+.+ .++ ..+... .++|+.|++++|.+.... ....+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l 323 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKI 323 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhC
Confidence 45555555554442 22222 4455566666665555 333 222221 156888888888775322 12688
Q ss_pred CCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc----ccCCCCCcceeecccCccCc-cchhhhhcCCCCc
Q 042919 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSG-KIQDGLSKATSLL 346 (428)
Q Consensus 272 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~ 346 (428)
++|++|++++|.+.+..+. .+..+++|+.|++++|.+.... .+..+++|++|++++|.+.+ .....+..+++|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 9999999999999854554 4678999999999999998632 27899999999999999987 4444578889999
Q ss_pred EEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCc-ccccCCCCCEEECCCCc
Q 042919 347 ELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPG-ALRRSLSLTVLDLRDNE 425 (428)
Q Consensus 347 ~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 425 (428)
+|++++|.+++..+..+. ++|+.|++++|+++........+++|+.|++++|+++ .+|. .+..+++|+.|++++|+
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 999999999877666654 7999999999999944443448999999999999999 4555 48999999999999999
Q ss_pred cCC
Q 042919 426 FSG 428 (428)
Q Consensus 426 ~~~ 428 (428)
++|
T Consensus 480 ~~c 482 (520)
T 2z7x_B 480 WDC 482 (520)
T ss_dssp BCC
T ss_pred Ccc
Confidence 975
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-36 Score=302.62 Aligned_cols=360 Identities=17% Similarity=0.151 Sum_probs=292.7
Q ss_pred eeeeecccccCCCCCcEEeccCCcCCCC-----------------chHhhh--cCCCCCEEEccCCccCcchhhhhccCC
Q 042919 42 LTVFVNTGICELKNLVELDLSKNNLYGH-----------------LSPCLS--NLTHIKVLDLSSNQLTGNLQSVIANIK 102 (428)
Q Consensus 42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~ 102 (428)
+.. +|..++++++|++|++++|.+++. +|..+. ++++|++|++++|.+.+..|..+.+++
T Consensus 437 L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 437 ITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred ccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 444 678899999999999999999972 777766 999999999999998888899999999
Q ss_pred CCcEEeCCCCc-cCC-cccccc-------ccCCCCCcEEEccCCccccccC--CCCCCCcCCccEEEcCCCCCccchhHh
Q 042919 103 SLEYLSLDDNN-FEG-LFSFNS-------LKNHSKLQVFKLSNSLVKIETE--EFPGLPEYQLKALNLRNCSLQALPSIL 171 (428)
Q Consensus 103 ~L~~L~l~~~~-~~~-~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l~~~~ 171 (428)
+|++|++++|+ +.+ .. +.. +..+++|++|++++|.+...+. .+..++ +|+.|++++|.+..+| .+
T Consensus 516 ~L~~L~Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~--~L~~L~Ls~N~l~~lp-~~ 591 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV--KLGLLDCVHNKVRHLE-AF 591 (876)
T ss_dssp SCCEEECTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCT--TCCEEECTTSCCCBCC-CC
T ss_pred CCCEEECcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCC--CCCEEECCCCCcccch-hh
Confidence 99999999998 665 22 233 3455699999999998875555 566655 4999999999999999 88
Q ss_pred hhCCCccEEEccCCcCCCCCchhhhhcCCC-CCEEEecCCccCCcccCCCCC--CCccEEecCCCccccCCCchh---hh
Q 042919 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTK-LDTLYLLNNSLSGNFQLPSSK--HDLLRLDISHNKFSCQLPGNM---GK 245 (428)
Q Consensus 172 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~---~~ 245 (428)
..+++|+.|++++|.+. .++..+ ..+++ |+.|++++|.+...+...... ++|+.|++++|.+.+.++... ..
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l-~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDF-CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTS-CEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred cCCCcceEEECcCCccc-cchHHH-hhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 89999999999999998 666554 57788 999999999988655444444 459999999999976544211 11
Q ss_pred -cCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCC-------CCCCEEeCCCcccccccc-cC
Q 042919 246 -ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC-------FSLSFLSLSDNHLQGEVV-FP 316 (428)
Q Consensus 246 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~-~~ 316 (428)
..++|+.|++++|.+.......+..+++|++|++++|.+. .++...+... ++|+.|++++|.+..... +.
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence 1458999999999998544444558999999999999988 7776655433 399999999999985544 44
Q ss_pred --CCCCcceeecccCccCccchhhhhcCCCCcEEEccC------CcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccc
Q 042919 317 --NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN------NMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFN 388 (428)
Q Consensus 317 --~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~------~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 388 (428)
.+++|+.|++++|.+.+ .+..+..+++|+.|++++ |.+.+.+|..+.++++|+.|+|++|++. ..|..+
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l- 825 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL- 825 (876)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCC-
T ss_pred hccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhh-
Confidence 89999999999999987 577788999999999976 6777789999999999999999999994 555554
Q ss_pred cccCceEEccCCcCCccCCccccc
Q 042919 389 LSSLRRLYMHMNAFNGSIPGALRR 412 (428)
Q Consensus 389 ~~~L~~L~l~~~~~~~~~~~~~~~ 412 (428)
.++|+.|++++|++....+..+..
T Consensus 826 ~~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 826 TPQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CSSSCEEECCSCTTCEEECGGGHH
T ss_pred cCCCCEEECCCCCCCccChHHccc
Confidence 379999999999998666655543
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=304.08 Aligned_cols=393 Identities=21% Similarity=0.180 Sum_probs=252.0
Q ss_pred cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCc-hHhhhcCCCCCEEEccCCccCcchhhhhccC
Q 042919 23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHL-SPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101 (428)
Q Consensus 23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 101 (428)
..++++.+... .++...+.+|.++++|++|++++|.....+ +..|.++++|++|++++|.+....|..|.++
T Consensus 24 ~~l~~LdLs~N-------~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 24 NTTERLLLSFN-------YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp TTCCEEEEESC-------CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCcCEEECCCC-------cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 34666666551 244555677788888888888887544333 6677888888888888888776667778888
Q ss_pred CCCcEEeCCCCccCCccc-cccccCCCCCcEEEccCCcccccc--CCCCCCCcCCccEEEcCCCCCcc-chhHhhhC--C
Q 042919 102 KSLEYLSLDDNNFEGLFS-FNSLKNHSKLQVFKLSNSLVKIET--EEFPGLPEYQLKALNLRNCSLQA-LPSILLQQ--L 175 (428)
Q Consensus 102 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~--~ 175 (428)
++|++|++++|.+.+..+ ...+..+++|++|++++|.+.... ..+..++ +|++|++++|.+.. .+..+..+ +
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~--~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN--SLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS--SCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC--CCCEEECCCCcCCeeCHHHcccccCC
Confidence 888888888887765322 224777888888888877764432 2344444 48888888877744 34445544 6
Q ss_pred CccEEEccCCcCCCCCchhhhhcCC------CCCEEEecCCccCCccc--------------------------------
Q 042919 176 DLRFIDLSHNKLQGIFPSWLLQNNT------KLDTLYLLNNSLSGNFQ-------------------------------- 217 (428)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~-------------------------------- 217 (428)
+|+.|++++|.+....+..+ ..+. .|+.|++++|.+.....
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred ccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 77777777777665444332 1222 37788887775432100
Q ss_pred -----CCC--CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919 218 -----LPS--SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290 (428)
Q Consensus 218 -----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 290 (428)
... ..++++.|++++|.+....+..+.. +++|+.|++++|.+....+..+..+++|++|++++|.+. .+..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~ 331 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYS 331 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCH
Confidence 000 1367888999888887544444443 889999999999888777788888999999999999887 4444
Q ss_pred hhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccc---------------------------------
Q 042919 291 QFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKI--------------------------------- 335 (428)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--------------------------------- 335 (428)
..+..+++|+.|++++|.+..... +..+++|++|++++|.++...
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccC
Confidence 457788999999999998876543 677888888888887765321
Q ss_pred -------hhhhhcCCCCcEEEccCCcccccCCc-ccCCCCCCcEEeCCCCcCCcC-----CCCcc-ccccCceEEccCCc
Q 042919 336 -------QDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISENQLCGS-----VPSSF-NLSSLRRLYMHMNA 401 (428)
Q Consensus 336 -------~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~L~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~ 401 (428)
...+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.++.. .+..+ .+++|+.|++++|.
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 11123556666666666666532211 223344444444444444311 11222 44556666666666
Q ss_pred CCccCCcccccCCCCCEEECCCCccC
Q 042919 402 FNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 402 ~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
+++..|..|..+++|+.|++++|.|+
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred ccccChhHccchhhhheeECCCCCCC
Confidence 65555555566666666666666554
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-36 Score=291.80 Aligned_cols=367 Identities=20% Similarity=0.240 Sum_probs=270.5
Q ss_pred CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK 133 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 133 (428)
++|++|++++|.+++..+..|.++++|++|++++|++....+.++..+++|++|++++|.+.+. ++..++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEE
Confidence 7899999999999987788899999999999999999977778899999999999999999876 335689999999999
Q ss_pred ccCCcccc--ccCCCCCCCcCCccEEEcCCCC-Cccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecC
Q 042919 134 LSNSLVKI--ETEEFPGLPEYQLKALNLRNCS-LQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN 209 (428)
Q Consensus 134 l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (428)
+++|.+.. .+..+...+ +|++|++++|. +..++ ..+..+++|++|++++|.+....+..+ ..+++|+.|+++.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~ 181 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLT--NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHL 181 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCT--TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEEC
T ss_pred CCCCcccccchhhhhhccC--CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh-hccccCceEeccc
Confidence 99998864 234455554 59999999998 57776 578889999999999999987666655 5789999999999
Q ss_pred CccCCcccCC-CCCCCccEEecCCCccccCC--Cchhhhc----------------------------CCCCcEEEccCC
Q 042919 210 NSLSGNFQLP-SSKHDLLRLDISHNKFSCQL--PGNMGKI----------------------------LPELLSLNLSEN 258 (428)
Q Consensus 210 ~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~----------------------------~~~L~~L~l~~~ 258 (428)
+......... ..+++|+.|++++|.+.+.. +..+... +++|+.+++.+|
T Consensus 182 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp SBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred CcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 8875433222 35789999999999886421 1111111 234444444444
Q ss_pred CCCCCC-----------------------------------CccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919 259 GFEGRI-----------------------------------PSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 303 (428)
Q Consensus 259 ~~~~~~-----------------------------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 303 (428)
.+.+.. +......++|+++++++|.+. .++..++..+++|+.|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEE
T ss_pred cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEE
Confidence 322100 000112345677777777765 66766666788888888
Q ss_pred CCCccccccc-----ccCCCCCcceeecccCccCccch--hhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCC
Q 042919 304 LSDNHLQGEV-----VFPNSTNLCWLYLNNNHFSGKIQ--DGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISE 376 (428)
Q Consensus 304 l~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~ 376 (428)
+++|.+.+.. .+..+++|++|++++|.+++... ..+..+++|++|++++|+++ .+|..+..+++|++|++++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCC
Confidence 8888877532 25677888888888888875432 45778888888888888887 6677777777777777777
Q ss_pred CcCCcCCCCc------------------cccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 377 NQLCGSVPSS------------------FNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 377 ~~~~~~~~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
|++++..... ..+++|++|++++|+++ .+|. ...+++|+.|++++|+++|
T Consensus 420 N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 420 TGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS 487 (549)
T ss_dssp SCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred CCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence 7765322211 14678888888888887 5565 4578888999998888875
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-34 Score=275.11 Aligned_cols=350 Identities=21% Similarity=0.255 Sum_probs=224.2
Q ss_pred cceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCC-chHhhhcCCCCCEEEccCCccCcchhhhhccC
Q 042919 23 GSITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGH-LSPCLSNLTHIKVLDLSSNQLTGNLQSVIANI 101 (428)
Q Consensus 23 ~~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 101 (428)
..++++.+... .+....+..++++++|++|++++|.+.+. .+..|.++++|++|++++|.+....+..+.++
T Consensus 30 ~~l~~L~Ls~n-------~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLN-------SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSS-------CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCC-------ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 45778877762 25566678899999999999999988744 46679999999999999999987778899999
Q ss_pred CCCcEEeCCCCccCCccc-cccccCCCCCcEEEccCCccccccC-C-CCCCCcCCccEEEcCCCCCccc-hhHhhhC--C
Q 042919 102 KSLEYLSLDDNNFEGLFS-FNSLKNHSKLQVFKLSNSLVKIETE-E-FPGLPEYQLKALNLRNCSLQAL-PSILLQQ--L 175 (428)
Q Consensus 102 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~--~ 175 (428)
++|++|++++|.+.+..+ ...+..+++|++|++++|.+..... . +...+ +|++|++++|.+..+ +..+..+ .
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~~ 180 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR--RFHVLDLTFNKVKSICEEDLLNFQGK 180 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT--TCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC--cccEEeCCCCcccccChhhhhccccc
Confidence 999999999999876322 2348899999999999998865433 2 44444 599999999998655 4455554 5
Q ss_pred CccEEEccCCcCCCCCchhh-------hhcCCCCCEEEecCCccCCccc----CCCCCCCccEEecCCCccccCCCc---
Q 042919 176 DLRFIDLSHNKLQGIFPSWL-------LQNNTKLDTLYLLNNSLSGNFQ----LPSSKHDLLRLDISHNKFSCQLPG--- 241 (428)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~--- 241 (428)
+|+.|+++++.+....+..+ ...+++|++|++++|.+.+... ......+++.++++++...+....
T Consensus 181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence 89999999999876543321 1245789999999998765211 112347899999998865422110
Q ss_pred -------hhhh-cCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc
Q 042919 242 -------NMGK-ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 313 (428)
Q Consensus 242 -------~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 313 (428)
.+.. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+. ..+...+..+++|+
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~------------- 326 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLL------------- 326 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC-------------
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCC-------------
Confidence 0000 0234555555555555444445555555555555555544 22222234444444
Q ss_pred ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL 392 (428)
Q Consensus 314 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L 392 (428)
+|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..+ .+++|
T Consensus 327 ---------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 327 ---------KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp ---------EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 45554444444444444445555555555555544444445555555555555555544443333 44555
Q ss_pred ceEEccCCcCCc
Q 042919 393 RRLYMHMNAFNG 404 (428)
Q Consensus 393 ~~L~l~~~~~~~ 404 (428)
+.|++++|++..
T Consensus 398 ~~L~l~~N~l~~ 409 (455)
T 3v47_A 398 QKIWLHTNPWDC 409 (455)
T ss_dssp CEEECCSSCBCC
T ss_pred cEEEccCCCccc
Confidence 555555555543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.1e-34 Score=276.20 Aligned_cols=361 Identities=22% Similarity=0.218 Sum_probs=256.6
Q ss_pred CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK 133 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 133 (428)
+++++|++++|.+.+..+..|.++++|++|++++|.++...+.+|..+++|++|++++|.+..+.. . .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--C--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS--C--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc--c--ccccCCEEE
Confidence 678888888888887777788888888888888888876667778888888888888888775522 2 778888888
Q ss_pred ccCCcccccc--CCCCCCCcCCccEEEcCCCCCccchhHhhhCCCc--cEEEccCCcC--CCCCchhhh-----------
Q 042919 134 LSNSLVKIET--EEFPGLPEYQLKALNLRNCSLQALPSILLQQLDL--RFIDLSHNKL--QGIFPSWLL----------- 196 (428)
Q Consensus 134 l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~----------- 196 (428)
+++|.+...+ ..+...+ +|++|++++|.+... .+..+++| +.|++++|.+ ....+..+.
T Consensus 128 Ls~N~l~~l~~p~~~~~l~--~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLT--KLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCT--TCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred CCCCCccccCchHhhcccC--cccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 8887775432 3455544 488888888877542 34445555 8888877766 333322221
Q ss_pred --------------hcCCCCCEEEecCCc----------------------------cCCc----ccCCCCCCCccEEec
Q 042919 197 --------------QNNTKLDTLYLLNNS----------------------------LSGN----FQLPSSKHDLLRLDI 230 (428)
Q Consensus 197 --------------~~~~~L~~L~l~~~~----------------------------~~~~----~~~~~~~~~L~~L~l 230 (428)
..+++|+.++++++. +... ........+|++|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 122334444444331 1000 000001126666677
Q ss_pred CCCccccCCCchhh----------------------------h--cCCCCcEEEccCCCCCCCCCccccCCCCCCEEECc
Q 042919 231 SHNKFSCQLPGNMG----------------------------K--ILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280 (428)
Q Consensus 231 ~~~~~~~~~~~~~~----------------------------~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (428)
++|.+.+.++..++ . ...++++|++++|.+.... ....+++|++|+++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFT 361 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECC
Confidence 66666554444331 0 0245888888888775321 12678999999999
Q ss_pred CcccCCCCchhhhcCCCCCCEEeCCCccccccc----ccCCCCCcceeecccCccCc-cchhhhhcCCCCcEEEccCCcc
Q 042919 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV----VFPNSTNLCWLYLNNNHFSG-KIQDGLSKATSLLELDLSNNML 355 (428)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i 355 (428)
+|.+.+..+ ..+..+++|+.|++++|.+.... .+..+++|++|++++|.+++ .....+..+++|+.|++++|.+
T Consensus 362 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 362 QNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp SSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 999985444 34678999999999999988643 27899999999999999987 4445678899999999999999
Q ss_pred cccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcc-cccCCCCCEEECCCCccCC
Q 042919 356 YGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGA-LRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 356 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 428 (428)
++..+..+. ++|+.|++++|+++........+++|+.|++++|+++ .+|.. +..+++|+.|++++|+++|
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred Ccchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 866665554 7999999999999855554558999999999999999 55554 8999999999999999876
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-34 Score=275.25 Aligned_cols=361 Identities=21% Similarity=0.201 Sum_probs=264.2
Q ss_pred CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK 133 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 133 (428)
++|++|++++|.+.+..+..|.++++|++|++++|+++...+..+.++++|++|++++|++..+.. . .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC--H--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC--C--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc--c--ccCCccEEe
Confidence 899999999999998888899999999999999999997778899999999999999999986522 2 899999999
Q ss_pred ccCCcccc--ccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCc--cEEEccCCcC--CCCCchhhh-----------
Q 042919 134 LSNSLVKI--ETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDL--RFIDLSHNKL--QGIFPSWLL----------- 196 (428)
Q Consensus 134 l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~----------- 196 (428)
+++|.+.. .+..+...+ +|++|++++|.+.. ..+..+++| +.|++++|.+ ....+..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~--~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMS--QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCT--TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred ccCCccccccchhhhccCC--cceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 99998864 235566555 49999999999865 456777778 9999999987 444333321
Q ss_pred --------------hcCCCCCEEEecCCc-------cCCcccCCCCCC---------------------------CccEE
Q 042919 197 --------------QNNTKLDTLYLLNNS-------LSGNFQLPSSKH---------------------------DLLRL 228 (428)
Q Consensus 197 --------------~~~~~L~~L~l~~~~-------~~~~~~~~~~~~---------------------------~L~~L 228 (428)
..+++|+.+++++|. +.+.......++ +|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 123444444444443 111111112223 45555
Q ss_pred ecCCCccccCCCchhh----hcCCCCcEEEccCCCCCCCCCccccCC---CCCCEEECcCcccCCCCchhhhcCCCCCCE
Q 042919 229 DISHNKFSCQLPGNMG----KILPELLSLNLSENGFEGRIPSSMSEM---KRLESLDLSSNNFSGELPRQFLSGCFSLSF 301 (428)
Q Consensus 229 ~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 301 (428)
++++|.+.+.++..++ ..+++|+.++++++.+ ......+..+ ++|++|++++|.+.. .+. ...+++|++
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~~--~~~l~~L~~ 328 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-MLC--PSKISPFLH 328 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-CCC--CSSCCCCCE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-ccc--hhhCCcccE
Confidence 5555554444444331 1244555555555544 1111222222 456677777666542 221 257899999
Q ss_pred EeCCCcccccc--cccCCCCCcceeecccCccCc--cchhhhhcCCCCcEEEccCCcccccCCc-ccCCCCCCcEEeCCC
Q 042919 302 LSLSDNHLQGE--VVFPNSTNLCWLYLNNNHFSG--KIQDGLSKATSLLELDLSNNMLYGQIPP-WFGNLSGLQFLDISE 376 (428)
Q Consensus 302 L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~L~~ 376 (428)
|++++|.+.+. ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++.+|. .+..+++|+.|++++
T Consensus 329 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp EECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 99999999873 347899999999999999986 3456788999999999999999864555 488899999999999
Q ss_pred CcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 377 NQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 377 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
|++++..+..+. ++|+.|++++|++. .+|..+..+++|+.|++++|+|++
T Consensus 409 N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 409 NILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp SCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc
Confidence 999876665543 79999999999999 888888899999999999999874
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-32 Score=262.41 Aligned_cols=327 Identities=28% Similarity=0.378 Sum_probs=274.1
Q ss_pred cccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCC
Q 042919 49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK 128 (428)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 128 (428)
.+..+++|++|++++|.+.+..+ +..+++|++|+++++.+....+ +.++++|++|++++|.+.+.. .+..+++
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~ 135 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID---PLKNLTN 135 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---GGTTCTT
T ss_pred chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh---HHcCCCC
Confidence 47789999999999999986655 8999999999999999885444 899999999999999988773 3899999
Q ss_pred CcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEec
Q 042919 129 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL 208 (428)
Q Consensus 129 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 208 (428)
|++|++++|.+...+ .+...+ +|+.+++. +.+..++. +..+++|+.|++++|.+.... . +..+++|+.|+++
T Consensus 136 L~~L~l~~n~l~~~~-~~~~l~--~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 136 LNRLELSSNTISDIS-ALSGLT--SLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDIS--V-LAKLTNLESLIAT 207 (466)
T ss_dssp CSEEEEEEEEECCCG-GGTTCT--TCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEECC
T ss_pred CCEEECCCCccCCCh-hhccCC--cccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCCh--h-hccCCCCCEEEec
Confidence 999999998876543 344444 59999996 45555544 788999999999999987542 2 4689999999999
Q ss_pred CCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCC
Q 042919 209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288 (428)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 288 (428)
+|.+..... ...+++|+.|++++|.+.+ + ..+. .+++|+.|++++|.+.+..+ +..+++|++|++++|.+. ..
T Consensus 208 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~ 280 (466)
T 1o6v_A 208 NNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NI 280 (466)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CC
T ss_pred CCccccccc-ccccCCCCEEECCCCCccc-c-hhhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cc
Confidence 999876544 5578899999999999873 3 2344 38999999999999985543 889999999999999987 34
Q ss_pred chhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCC
Q 042919 289 PRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG 368 (428)
Q Consensus 289 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 368 (428)
+. +..+++|+.|++++|.+.+...+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..++++++
T Consensus 281 ~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 281 SP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 43 67899999999999999988888999999999999999986654 77899999999999999854 57899999
Q ss_pred CcEEeCCCCcCCcCCCCccccccCceEEccCCcCCc
Q 042919 369 LQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNG 404 (428)
Q Consensus 369 L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 404 (428)
|+.|++++|++++..+ ...+++|+.|++++|++++
T Consensus 355 L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 9999999999987776 3388999999999999874
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.1e-33 Score=275.58 Aligned_cols=162 Identities=27% Similarity=0.327 Sum_probs=137.1
Q ss_pred ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccC-ccchhhhhcC
Q 042919 266 SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFS-GKIQDGLSKA 342 (428)
Q Consensus 266 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~-~~~~~~l~~~ 342 (428)
..+..+++|+.+++..+......+...+..+..++.++++.|.+..... +..++.++.|++++|... ...+..|..+
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 3455677778888877766545555567778899999998888775443 778899999999998754 3466778899
Q ss_pred CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccC-CCCCEEE
Q 042919 343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRS-LSLTVLD 420 (428)
Q Consensus 343 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~ 420 (428)
++|+.|++++|++++..|..|.++++|+.|+|++|++++..+..+ .+++|+.|++++|++++..|..+..+ ++|+.|+
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 999999999999998889999999999999999999998888777 88999999999999998899999888 6899999
Q ss_pred CCCCccC
Q 042919 421 LRDNEFS 427 (428)
Q Consensus 421 l~~~~~~ 427 (428)
+++||++
T Consensus 574 L~~Np~~ 580 (635)
T 4g8a_A 574 LTQNDFA 580 (635)
T ss_dssp CTTCCBC
T ss_pred eeCCCCc
Confidence 9999986
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-32 Score=252.47 Aligned_cols=306 Identities=23% Similarity=0.315 Sum_probs=212.7
Q ss_pred hhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCC
Q 042919 74 LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ 153 (428)
Q Consensus 74 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 153 (428)
+..+++|++|++.++.+.. .+ .+..+++|++|++++|.+.++.+ +..+++|++|++++|.+..
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~------------ 102 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD------------ 102 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC------------
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccC------------
Confidence 4567888999998888773 33 37788889999999888876622 6677777777766665433
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (428)
++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|...........+++|++|+++++
T Consensus 103 -------------~~-~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 103 -------------IS-ALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp -------------CG-GGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred -------------ch-HHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 22 23344444444444444443221 23444555555554433333333445555666666665
Q ss_pred ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc
Q 042919 234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 313 (428)
Q Consensus 234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 313 (428)
.+... +. +. .+++|++|++++|.+.+..+ +..+++|+++++++|.+.+ .+. +..+++|+.|++++|.+....
T Consensus 166 ~~~~~-~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 166 KVKDV-TP-IA-NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp CCCCC-GG-GG-GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CcCCc-hh-hc-cCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCCc
Confidence 55422 21 33 37788888888887764322 6778888888888887763 332 567888888888888888777
Q ss_pred ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccC
Q 042919 314 VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSL 392 (428)
Q Consensus 314 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L 392 (428)
.+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..+ .+++|
T Consensus 238 ~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 238 PLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred chhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 788888899999998888754 4678889999999999988743 457888999999999999887777666 78999
Q ss_pred ceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 393 RRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 393 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
+.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999986656 788999999999999986
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-32 Score=248.20 Aligned_cols=307 Identities=23% Similarity=0.291 Sum_probs=193.1
Q ss_pred ccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCC
Q 042919 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKL 129 (428)
Q Consensus 50 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 129 (428)
+..+++|++|+++++.+... + .+..+++|++|++++|.+....+ +..+++|++|++++|.+.++ ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~---~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI---SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC---GGGTTCTTC
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc---hHHcCCCcC
Confidence 45789999999999998854 3 38899999999999999885433 88999999999999988876 458888888
Q ss_pred cEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecC
Q 042919 130 QVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN 209 (428)
Q Consensus 130 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (428)
++|+++++.+...+. +...+ +|+++++++|........+..+++|+.|++++|.+....+ +..+++|+.|++++
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~--~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLT--KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNY 186 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCT--TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTT
T ss_pred CEEECcCCcccCchh-hccCC--ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccC
Confidence 888888776644333 33333 3666776666432223335666666666666666554332 34555566666555
Q ss_pred CccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCc
Q 042919 210 NSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELP 289 (428)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 289 (428)
|.+..... ... +++|+.+++++|.+.+..+ +..+++|++|++++|.+. ..+
T Consensus 187 n~l~~~~~-~~~-------------------------l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~ 237 (347)
T 4fmz_A 187 NQIEDISP-LAS-------------------------LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLS 237 (347)
T ss_dssp SCCCCCGG-GGG-------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG
T ss_pred Cccccccc-ccC-------------------------CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCc
Confidence 55443221 223 5555555555555543222 455556666666665554 222
Q ss_pred hhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCC
Q 042919 290 RQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGL 369 (428)
Q Consensus 290 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L 369 (428)
. +..+++|+.|++++|.+.....+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..++++++|
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred c--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 2 445566666666666555554456666666666666666543 345566666666666666665555666666667
Q ss_pred cEEeCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919 370 QFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN 403 (428)
Q Consensus 370 ~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 403 (428)
+.|++++|++++..+ ...+++|+.|++++|+++
T Consensus 314 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 777777766665444 225666777777766654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.4e-32 Score=262.36 Aligned_cols=358 Identities=22% Similarity=0.210 Sum_probs=266.8
Q ss_pred CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV 131 (428)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 131 (428)
.|...++++++++.++. +|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.++. +..+.++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCE
Confidence 45566999999999985 554443 89999999999999777789999999999999999988763 367899999999
Q ss_pred EEccCCccccccCCCCCCCcCCccEEEcCCCCCccch--hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCC--CEEEe
Q 042919 132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP--SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKL--DTLYL 207 (428)
Q Consensus 132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l 207 (428)
|++++|.+...+.. ...+|++|++++|.+..++ ..+..+++|+.|++++|.+.... +..+++| +.|++
T Consensus 105 L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L 176 (562)
T 3a79_B 105 LDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILL 176 (562)
T ss_dssp EECTTSCCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEE
T ss_pred EECCCCcCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEe
Confidence 99999988654444 3446999999999997764 78999999999999999987533 2345556 99999
Q ss_pred cCCcc--CCccc-C--------------------------CCCCCCccEEecCCCcc-----------------------
Q 042919 208 LNNSL--SGNFQ-L--------------------------PSSKHDLLRLDISHNKF----------------------- 235 (428)
Q Consensus 208 ~~~~~--~~~~~-~--------------------------~~~~~~L~~L~l~~~~~----------------------- 235 (428)
++|.+ ..... . ...+++|+.++++++..
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 99877 32110 0 11344556666655420
Q ss_pred -----ccC----CCchhhhcCCCCcEEEccCCCCCCCCCccc-----cCC--------------------------CCCC
Q 042919 236 -----SCQ----LPGNMGKILPELLSLNLSENGFEGRIPSSM-----SEM--------------------------KRLE 275 (428)
Q Consensus 236 -----~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~ 275 (428)
.+. .+... . .++|++|++++|.+.+..|..+ .++ ++|+
T Consensus 257 ~~~~l~~~~~~~~~~~~-~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFF-W-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHH-T-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhh-h-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 000 00000 1 2378888888887765555444 222 2355
Q ss_pred EEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCcc--chhhhhcCCCCcEEEcc
Q 042919 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGK--IQDGLSKATSLLELDLS 351 (428)
Q Consensus 276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~ 351 (428)
+|++++|.+.. .. ....+++|+.|++++|.+.+.. .+..+++|++|++++|.+++. .+..+..+++|+.|+++
T Consensus 335 ~L~l~~n~~~~-~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 335 MLSISDTPFIH-MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp EEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred EEEccCCCccc-cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 55555555431 11 1156889999999999998743 378899999999999998863 34568899999999999
Q ss_pred CCcccccCCc-ccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 352 NNMLYGQIPP-WFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 352 ~~~i~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+|.+++.+|. .+..+++|+.|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+|++
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence 9999874554 588899999999999999876655443 79999999999998 777777799999999999999874
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.7e-32 Score=256.64 Aligned_cols=299 Identities=21% Similarity=0.187 Sum_probs=232.5
Q ss_pred cccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCC
Q 042919 49 GICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSK 128 (428)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 128 (428)
+++++++|++|+++++.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+.++ .++.+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~----~~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL----DVTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC----CCTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee----ecCCCCc
Confidence 577899999999999999865 4 688999999999999998853 3 78899999999999998876 2889999
Q ss_pred CcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEec
Q 042919 129 LQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLL 208 (428)
Q Consensus 129 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 208 (428)
|++|++++|.+...+ +...+ +|++|++++|.+..++ +..+++|+.|++++|......+ +..+++|+.|+++
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~--~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls 178 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNP--LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCS 178 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCT--TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECC
T ss_pred CCEEECCCCcCCeec--CCCCC--cCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECC
Confidence 999999999876532 44443 5999999999998875 7788999999999996443442 4578999999999
Q ss_pred CCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCC
Q 042919 209 NNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGEL 288 (428)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 288 (428)
+|.+.... ...+++|+.|++++|.+.+. + +.. +++|+.|++++|.+.+ .| +..+++|++|++++|.+.+ .
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~--l~~-l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~ 248 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNNITKL-D--LNQ-NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-L 248 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSCCSCC-C--CTT-CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-C
T ss_pred CCccceec--cccCCCCCEEECcCCcCCee-c--ccc-CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-c
Confidence 99988753 67889999999999998743 2 333 7899999999999986 34 7889999999999999874 4
Q ss_pred chhhhcCCCCCCEEeC----------CCcccccccccCCCCCcceeecccCccCccchh--------hhhcCCCCcEEEc
Q 042919 289 PRQFLSGCFSLSFLSL----------SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQD--------GLSKATSLLELDL 350 (428)
Q Consensus 289 ~~~~~~~~~~L~~L~l----------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~l~~~~~L~~L~l 350 (428)
+. ..+++|+.|++ ++|......+...+++|+.|++++|...+..+. .+..+++|+.|++
T Consensus 249 ~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L 325 (457)
T 3bz5_A 249 DV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL 325 (457)
T ss_dssp CC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred CH---HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence 42 34555555544 444444444466778888888888865433221 2456677888888
Q ss_pred cCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
++|++++ ++ ++++++|+.|++++|++++
T Consensus 326 ~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 326 NNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 8888875 33 7778888888888888775
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.5e-32 Score=251.23 Aligned_cols=309 Identities=23% Similarity=0.235 Sum_probs=159.8
Q ss_pred CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV 131 (428)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 131 (428)
.++++++|+++++.+....+..+..+++|++|+++++.+....+..+..+++|++|++++|.+.++.+ ..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCE
Confidence 45777777777777775555566777777777777777775555677777777777777777665522 33455555444
Q ss_pred EEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCC
Q 042919 132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210 (428)
Q Consensus 132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (428)
|+++ +|.+..+|.. +..+++|++|++++|.+....+..+ ..+++|++|++++|
T Consensus 122 L~L~-------------------------~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 122 LVLE-------------------------RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN 175 (390)
T ss_dssp EECC-------------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSS
T ss_pred EECC-------------------------CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECCCC
Confidence 4444 4444444433 2455566666666665553333222 34555555555555
Q ss_pred ccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290 (428)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 290 (428)
.+... ....+++|+.++++++.+.. + ...++|++|++++|.+... +. ...++|++|++++|.+
T Consensus 176 ~l~~~--~~~~l~~L~~L~l~~n~l~~-~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l------ 238 (390)
T 3o6n_A 176 RLTHV--DLSLIPSLFHANVSYNLLST-L-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNL------ 238 (390)
T ss_dssp CCSBC--CGGGCTTCSEEECCSSCCSE-E-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCC------
T ss_pred cCCcc--ccccccccceeecccccccc-c-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCC------
Confidence 44332 12233344444444443321 0 0133455555555544422 11 1224455555555544
Q ss_pred hhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCc
Q 042919 291 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQ 370 (428)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 370 (428)
.+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ .++..+..+++|+
T Consensus 239 -------------------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~ 298 (390)
T 3o6n_A 239 -------------------TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLK 298 (390)
T ss_dssp -------------------CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCC
T ss_pred -------------------cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCC
Confidence 44333444455555555555554444445555555555555555554 2333344455555
Q ss_pred EEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 371 FLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 371 ~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
.|++++|++++..+....+++|+.|++++|++... + +..+++|+.|++++|+++
T Consensus 299 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred EEECCCCcceecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 55555555543222211455555555555555422 2 444555555555555543
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.1e-31 Score=260.67 Aligned_cols=182 Identities=24% Similarity=0.260 Sum_probs=143.1
Q ss_pred CCCCccEEecCCCccccC--CCchhhh----------------------cCCCCcEEEccCCCCCC-CCCccccCCCCCC
Q 042919 221 SKHDLLRLDISHNKFSCQ--LPGNMGK----------------------ILPELLSLNLSENGFEG-RIPSSMSEMKRLE 275 (428)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~--~~~~~~~----------------------~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~ 275 (428)
.+++|+.++++.+.+... .+..... .+++|+.+++..+.... .....+..+++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 567888888888765321 1111111 14455666665543332 2334577889999
Q ss_pred EEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc---cccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccC
Q 042919 276 SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE---VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSN 352 (428)
Q Consensus 276 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 352 (428)
.++++.|.+. ......+..++.++.|++++|.+... ..+..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 449 ~l~ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred cccccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 9999999987 44445577899999999999976543 2388899999999999999988889999999999999999
Q ss_pred CcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cc-ccCceEEccCCcCC
Q 042919 353 NMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NL-SSLRRLYMHMNAFN 403 (428)
Q Consensus 353 ~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~ 403 (428)
|++++..+..+.++++|+.|+|++|++++..+..+ .+ ++|+.|++++|++.
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99997888889999999999999999999888887 55 68999999999976
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=253.76 Aligned_cols=314 Identities=22% Similarity=0.250 Sum_probs=198.5
Q ss_pred CEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc-ccCCCCCCCcCCccEEEc
Q 042919 81 KVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNL 159 (428)
Q Consensus 81 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l 159 (428)
+.++..+..++ ..|..+ .++++.|++++|.+.++. +..+.++++|++|++++|.+.. .+..+..++. |++|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFN--LRTLGL 87 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT--CCEEEC
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceEC-HhHccCCCCCCEEECCCCccCEeChhhhhCCcc--CCEEEC
Confidence 56677766666 345433 368899999999887663 3577888888888888877644 3455655553 888888
Q ss_pred CCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCcccc
Q 042919 160 RNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSC 237 (428)
Q Consensus 160 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 237 (428)
++|.+..++.. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.... .....+++|++|++++|.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 165 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT- 165 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHc-cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-
Confidence 88888777653 5677788888888887775444433 56777888888777765432 23456667777777777665
Q ss_pred CCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--c
Q 042919 238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--F 315 (428)
Q Consensus 238 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~ 315 (428)
.++......+++|+.|++.+|.+....+..+..+++|++|++++|...+.++...+ ...+|+.|++++|.+..... +
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~ 244 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAV 244 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHH
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHh
Confidence 33433333366777777777766655555666677777777776665544444332 22356666666665554432 5
Q ss_pred CCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCce
Q 042919 316 PNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRR 394 (428)
Q Consensus 316 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~ 394 (428)
..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+.++++|+.|+|++|.+++..+..+ .+++|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 555666666666666555555555556666666666666655555556666666666666666655444444 5556666
Q ss_pred EEccCCcCC
Q 042919 395 LYMHMNAFN 403 (428)
Q Consensus 395 L~l~~~~~~ 403 (428)
|++++|++.
T Consensus 325 L~l~~N~l~ 333 (477)
T 2id5_A 325 LILDSNPLA 333 (477)
T ss_dssp EECCSSCEE
T ss_pred EEccCCCcc
Confidence 666666554
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=253.60 Aligned_cols=298 Identities=20% Similarity=0.174 Sum_probs=196.4
Q ss_pred CCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE
Q 042919 54 KNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK 133 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 133 (428)
+++++|+++++.++...+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+..+ +...+.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEE
Confidence 5788999998888877777888889999999998888876678888888999999998888766 334567888888888
Q ss_pred ccCCccccc-cCCCCCCCcCCccEEEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCc
Q 042919 134 LSNSLVKIE-TEEFPGLPEYQLKALNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNS 211 (428)
Q Consensus 134 l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 211 (428)
+++|.+... +..+...+ +|++|++++|.+..+ +..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.
T Consensus 111 Ls~n~i~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLY--NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCT--TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCC
T ss_pred CCCCccccCChhHccccc--cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCc
Confidence 887776433 33444444 477777777777555 345666777777777777776433 3333566777777777766
Q ss_pred cCCccc-CCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919 212 LSGNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290 (428)
Q Consensus 212 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 290 (428)
+..... .... +++|+.|++++|...+..+.......+|++|++++|.+. .++.
T Consensus 188 i~~~~~~~~~~-------------------------l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~ 241 (477)
T 2id5_A 188 INAIRDYSFKR-------------------------LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241 (477)
T ss_dssp CCEECTTCSCS-------------------------CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCH
T ss_pred CcEeChhhccc-------------------------CcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCH
Confidence 554221 2223 445555555554443333333333445666666666555 4554
Q ss_pred hhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCC
Q 042919 291 QFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSG 368 (428)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 368 (428)
..+..+++|+.|++++|.+..... +..+++|++|++++|.+.+..+..|..+++|+.|++++|.++...+..|..+++
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 445556666666666666554332 556666777777777666666666667777777777777776555556667777
Q ss_pred CcEEeCCCCcCCc
Q 042919 369 LQFLDISENQLCG 381 (428)
Q Consensus 369 L~~L~L~~~~~~~ 381 (428)
|+.|++++|++..
T Consensus 322 L~~L~l~~N~l~c 334 (477)
T 2id5_A 322 LETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEEccCCCccC
Confidence 7777777776653
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-31 Score=250.72 Aligned_cols=340 Identities=24% Similarity=0.244 Sum_probs=173.7
Q ss_pred ecccccCCCCCcEEeccCCcCCCCchHhhhcCCC-------------CCEEEccCCccCcchhhhhccCCCCcEEeCCCC
Q 042919 46 VNTGICELKNLVELDLSKNNLYGHLSPCLSNLTH-------------IKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDN 112 (428)
Q Consensus 46 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 112 (428)
+|++++++++|++|++++|.+.+..|..+.++++ +++|+++++.+++ .|. ..++|++|++++|
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n 101 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASCN 101 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSEEECCSS
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCEEEccCC
Confidence 3455667777777777766665555555555544 3666666666553 222 1355666666666
Q ss_pred ccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCc
Q 042919 113 NFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFP 192 (428)
Q Consensus 113 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 192 (428)
.+.++. . ..++|++|++++|.+...+. .+ .+|++|++++|.+..+| .+..+++|+.|++++|.+.. .+
T Consensus 102 ~l~~lp--~---~~~~L~~L~l~~n~l~~l~~----~~-~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 102 SLTELP--E---LPQSLKSLLVDNNNLKALSD----LP-PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp CCSSCC--C---CCTTCCEEECCSSCCSCCCS----CC-TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred cCCccc--c---ccCCCcEEECCCCccCcccC----CC-CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cC
Confidence 655531 1 12556666666554432211 11 23666666666555555 35555566666666655543 22
Q ss_pred hhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCC
Q 042919 193 SWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK 272 (428)
Q Consensus 193 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 272 (428)
. ...+|++|++++|.+.... ....+++|+.|++++|.+.+ ++.. .++|++|++++|.+. ..+ .+..++
T Consensus 170 ~----~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~ 237 (454)
T 1jl5_A 170 D----LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLP 237 (454)
T ss_dssp C----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCT
T ss_pred C----CcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCC
Confidence 1 1235555555555555432 34455555555555555442 2211 234555555555544 223 244555
Q ss_pred CCCEEECcCcccCCCCchhh----------------hcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccch
Q 042919 273 RLESLDLSSNNFSGELPRQF----------------LSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 336 (428)
Q Consensus 273 ~L~~L~l~~~~~~~~~~~~~----------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 336 (428)
+|++|++++|.+. .++... -..+++|+.|++++|.+.+...+ .++|++|++++|.+++.
T Consensus 238 ~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~i-- 312 (454)
T 1jl5_A 238 FLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSL-- 312 (454)
T ss_dssp TCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCCSEE--
T ss_pred CCCEEECCCCcCC-cccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCc--CCcCCEEECcCCcCCcc--
Confidence 5555555555444 222100 00124455555555544432211 24566666666655431
Q ss_pred hhhhcC-CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCc--cCCcccccC
Q 042919 337 DGLSKA-TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNG--SIPGALRRS 413 (428)
Q Consensus 337 ~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 413 (428)
... ++|+.|++++|++++ +|.. +++|+.|++++|++++.. . .+++|+.|++++|++.+ ..|..++.+
T Consensus 313 ---~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp-~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 313 ---CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVP-E--LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp ---CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ---cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccccc-c--hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 122 578888888888874 5543 478999999999888543 3 47899999999999987 678888777
Q ss_pred -------------CCCCEEECCCCccCC
Q 042919 414 -------------LSLTVLDLRDNEFSG 428 (428)
Q Consensus 414 -------------~~L~~L~l~~~~~~~ 428 (428)
++|+.|++++|+++|
T Consensus 383 ~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 383 RMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ECCC------------------------
T ss_pred hhcccccccccccCcCCEEECCCCcCCc
Confidence 789999999999875
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=7.3e-31 Score=257.08 Aligned_cols=308 Identities=23% Similarity=0.234 Sum_probs=157.2
Q ss_pred CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV 131 (428)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 131 (428)
.+++++.++++++.+...++..+..+++|++|+++++.+....+..|..+++|++|++++|.+.++. +..++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC-HHHHcCCCCCCE
Confidence 3466677777776666555555666777777777777666555556667777777777777665542 233444444444
Q ss_pred EEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCC
Q 042919 132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210 (428)
Q Consensus 132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (428)
|+ +++|.+..+|.. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|
T Consensus 128 L~-------------------------L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N 181 (597)
T 3oja_B 128 LV-------------------------LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSN 181 (597)
T ss_dssp EE-------------------------CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTS
T ss_pred EE-------------------------eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCC
Confidence 44 444444444433 2455566666666665554333322 34555555555555
Q ss_pred ccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290 (428)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 290 (428)
.+... ....+++|+.|++++|.+.+ + ..+++|+.|++++|.+..... . ..++|++|++++|.
T Consensus 182 ~l~~~--~~~~l~~L~~L~l~~n~l~~-l-----~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~------- 243 (597)
T 3oja_B 182 RLTHV--DLSLIPSLFHANVSYNLLST-L-----AIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNN------- 243 (597)
T ss_dssp CCSBC--CGGGCTTCSEEECCSSCCSE-E-----ECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSC-------
T ss_pred CCCCc--ChhhhhhhhhhhcccCcccc-c-----cCCchhheeeccCCccccccc-c--cCCCCCEEECCCCC-------
Confidence 44432 12233344444444443321 0 013345555555554432111 1 12344555555544
Q ss_pred hhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCc
Q 042919 291 QFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQ 370 (428)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 370 (428)
+.+...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 244 ------------------l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~ 304 (597)
T 3oja_B 244 ------------------LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLK 304 (597)
T ss_dssp ------------------CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCC
T ss_pred ------------------CCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCc
Confidence 4444344455555555555555554445555555555555555555552 344444455555
Q ss_pred EEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 371 FLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 371 ~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
.|+|++|.++.. +..+ .+++|+.|++++|++... + +..+++|+.|++++|+++
T Consensus 305 ~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 305 VLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred EEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 555555555522 2222 455555555555555422 2 444555555555555543
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=1.2e-30 Score=246.20 Aligned_cols=339 Identities=19% Similarity=0.178 Sum_probs=255.5
Q ss_pred CcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEcc
Q 042919 56 LVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLS 135 (428)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 135 (428)
++.............+..+.++++|++|+++++.+.+. + .+..+++|++|++++|.+.++ .++.+++|++|+++
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls 93 (457)
T 3bz5_A 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACD 93 (457)
T ss_dssp HHHHHHHHTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECC
T ss_pred HHHHHHHhcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECc
Confidence 33333334444444455688899999999999998853 4 689999999999999999886 28899999999999
Q ss_pred CCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc
Q 042919 136 NSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN 215 (428)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 215 (428)
+|.+...+ +...+ +|++|++++|.+..++ +..+++|+.|++++|.+... + +..+++|++|++++|...+.
T Consensus 94 ~N~l~~~~--~~~l~--~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 94 SNKLTNLD--VTPLT--KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp SSCCSCCC--CTTCT--TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCC
T ss_pred CCCCceee--cCCCC--cCCEEECCCCcCCeec--CCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCcccc
Confidence 99876542 44444 5999999999998886 78899999999999998864 2 46889999999999965443
Q ss_pred ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcC
Q 042919 216 FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSG 295 (428)
Q Consensus 216 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 295 (428)
. ....+++|+.|++++|.+.+ ++ +. .+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ ++ +..
T Consensus 164 ~-~~~~l~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~ 231 (457)
T 3bz5_A 164 L-DVTPQTQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTP 231 (457)
T ss_dssp C-CCTTCTTCCEEECCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTT
T ss_pred c-ccccCCcCCEEECCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccc
Confidence 3 45678999999999999974 44 33 388999999999999854 47889999999999999984 55 568
Q ss_pred CCCCCEEeCCCcccccccccCCCCCcceee----------cccCccCccchhhhhcCCCCcEEEccCCcccccCCc----
Q 042919 296 CFSLSFLSLSDNHLQGEVVFPNSTNLCWLY----------LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPP---- 361 (428)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~----------l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~---- 361 (428)
+++|+.|++++|.+.+.. ...+++|+.|+ +++|...+..+ +..+++|+.|++++|...+.+|.
T Consensus 232 l~~L~~L~l~~N~l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp CTTCSEEECCSSCCSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred cCCCCEEEeeCCcCCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCc
Confidence 899999999999988654 45555555554 44444333332 45678899999988865433332
Q ss_pred ----ccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCc------------ccccCCCCCEEECCCCc
Q 042919 362 ----WFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPG------------ALRRSLSLTVLDLRDNE 425 (428)
Q Consensus 362 ----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------~~~~~~~L~~L~l~~~~ 425 (428)
.+.++++|+.|++++|++++. + ...+++|+.|++++|++.+. +. +...+..|..+++++|.
T Consensus 309 L~~L~l~~~~~L~~L~L~~N~l~~l-~-l~~l~~L~~L~l~~N~l~~l-~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNTELTEL-D-VSHNTKLKSLSCVNAHIQDF-SSVGKIPALNNNFEAEGQTITMPKETLTNNS 385 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCCCSCC-C-CTTCTTCSEEECCSSCCCBC-TTGGGSSGGGTSEEEEEEEEECCCBCCBTTB
T ss_pred ceEechhhcccCCEEECCCCccccc-c-cccCCcCcEEECCCCCCCCc-cccccccccCCcEEecceeeecCccccccCc
Confidence 256678888888888888864 2 22788888999988888742 11 01123456777777777
Q ss_pred cCC
Q 042919 426 FSG 428 (428)
Q Consensus 426 ~~~ 428 (428)
++|
T Consensus 386 l~g 388 (457)
T 3bz5_A 386 LTI 388 (457)
T ss_dssp EEE
T ss_pred EEE
Confidence 766
No 38
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=7.4e-34 Score=270.61 Aligned_cols=370 Identities=22% Similarity=0.198 Sum_probs=250.0
Q ss_pred CCCcEEeccCCcCCCCchHh-hhcCCCCCEEEccCCccCc----chhhhhccCCCCcEEeCCCCccCCccccccccCCC-
Q 042919 54 KNLVELDLSKNNLYGHLSPC-LSNLTHIKVLDLSSNQLTG----NLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHS- 127 (428)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~- 127 (428)
++|++|+++++.++...... +..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+.........++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56888888888877544333 6778888888888888773 34566777888888888888776543322333344
Q ss_pred ---CCcEEEccCCcccc-----ccCCCCCCCcCCccEEEcCCCCCccc-hhHhh-----hCCCccEEEccCCcCCCCCch
Q 042919 128 ---KLQVFKLSNSLVKI-----ETEEFPGLPEYQLKALNLRNCSLQAL-PSILL-----QQLDLRFIDLSHNKLQGIFPS 193 (428)
Q Consensus 128 ---~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~-----~~~~L~~L~l~~~~~~~~~~~ 193 (428)
+|++|++++|.+.. .+..+...+ +|++|++++|.+... +..+. ..++|+.|++++|.+++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP--TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCT--TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCC--ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 68888888877653 233444444 489999998887432 22222 245799999999988765432
Q ss_pred h---hhhcCCCCCEEEecCCccCCccc-CC-----CCCCCccEEecCCCccccC----CCchhhhcCCCCcEEEccCCCC
Q 042919 194 W---LLQNNTKLDTLYLLNNSLSGNFQ-LP-----SSKHDLLRLDISHNKFSCQ----LPGNMGKILPELLSLNLSENGF 260 (428)
Q Consensus 194 ~---~~~~~~~L~~L~l~~~~~~~~~~-~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 260 (428)
. .+..+++|++|++++|.+..... .. ...++|++|++++|.++.. ++..+. .+++|++|++++|.+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBC
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcC
Confidence 2 23567899999999988654211 01 1345899999999988743 233333 378899999999887
Q ss_pred CCCC-----CccccCCCCCCEEECcCcccCCCC---chhhhcCCCCCCEEeCCCcccccccc-------cCCCCCcceee
Q 042919 261 EGRI-----PSSMSEMKRLESLDLSSNNFSGEL---PRQFLSGCFSLSFLSLSDNHLQGEVV-------FPNSTNLCWLY 325 (428)
Q Consensus 261 ~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~L~~L~ 325 (428)
.+.. +..+..+++|++|++++|.+++.. ....+..+++|+.|++++|.+.+... ....++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 6432 222335788999999999876321 12234568899999999988765432 23346899999
Q ss_pred cccCccCccc----hhhhhcCCCCcEEEccCCcccccCCcccCC-----CCCCcEEeCCCCcCCc----CCCCcc-cccc
Q 042919 326 LNNNHFSGKI----QDGLSKATSLLELDLSNNMLYGQIPPWFGN-----LSGLQFLDISENQLCG----SVPSSF-NLSS 391 (428)
Q Consensus 326 l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-----~~~L~~L~L~~~~~~~----~~~~~~-~~~~ 391 (428)
+++|.+++.. +..+..+++|++|++++|.+++..+..+.. .++|++|++++|++++ ..+..+ .+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 9999887653 445667789999999999887554433332 6789999999998875 344444 6789
Q ss_pred CceEEccCCcCCccCCcc----cc-cCCCCCEEECCCCcc
Q 042919 392 LRRLYMHMNAFNGSIPGA----LR-RSLSLTVLDLRDNEF 426 (428)
Q Consensus 392 L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~ 426 (428)
|++|++++|++....... +. ...+|+.|++.++.+
T Consensus 400 L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 999999999887432222 21 234688888777654
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.1e-30 Score=244.38 Aligned_cols=334 Identities=24% Similarity=0.254 Sum_probs=234.5
Q ss_pred CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCC-------------CcEEeCCCCccCCcc
Q 042919 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKS-------------LEYLSLDDNNFEGLF 118 (428)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~ 118 (428)
+..+|++|.++++.+ +.+|..+.++++|++|++++|.+.+..|..++.+++ +++|++++|.++++.
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 468999999999999 588999999999999999999888778888887775 599999999988762
Q ss_pred ccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhc
Q 042919 119 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQN 198 (428)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 198 (428)
. -.++|++|+++++.+...+... .+|++|++++|.+..++.. .++|++|++++|.+.. ++ . +..
T Consensus 88 ~-----~~~~L~~L~l~~n~l~~lp~~~-----~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp-~-~~~ 151 (454)
T 1jl5_A 88 E-----LPPHLESLVASCNSLTELPELP-----QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LP-E-LQN 151 (454)
T ss_dssp S-----CCTTCSEEECCSSCCSSCCCCC-----TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CC-C-CTT
T ss_pred C-----CcCCCCEEEccCCcCCcccccc-----CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-Cc-c-cCC
Confidence 2 2479999999998876543321 3699999999999877643 2699999999999885 55 3 578
Q ss_pred CCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEE
Q 042919 199 NTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD 278 (428)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 278 (428)
+++|++|++++|.+.... ...++|++|++++|.+.+ ++ .+.. +++|+.|++++|.+.+ .+.. .++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~-l~-~~~~-l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEE-LP-ELQN-LPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSS-CC-CCTT-CTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCc-Cc-cccC-CCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 999999999999988643 334699999999999984 55 4444 8999999999999874 3332 36899999
Q ss_pred CcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc-
Q 042919 279 LSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG- 357 (428)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~- 357 (428)
+++|.+. .++. +..+++|+.|++++|.+..... .+++|++|++++|.+.+. +. .+++|+.|++++|.+++
T Consensus 222 l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 222 AGNNILE-ELPE--LQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CCSSCCS-SCCC--CTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEE
T ss_pred CcCCcCC-cccc--cCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcc
Confidence 9999987 6764 6789999999999998876433 347788888888877642 21 13566666666666653
Q ss_pred -cCCcc-------------cCCC-CCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECC
Q 042919 358 -QIPPW-------------FGNL-SGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLR 422 (428)
Q Consensus 358 -~~~~~-------------~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 422 (428)
..|.. +..+ ++|+.|++++|++++. +. .+++|+.|++++|.++ .+|. .+++|+.|+++
T Consensus 293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~--~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PA--LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVE 365 (454)
T ss_dssp SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccc-cc--cCCcCCEEECCCCccc-cccc---hhhhccEEECC
Confidence 12211 1122 4788888888887753 32 2588999999999888 5665 47899999999
Q ss_pred CCccCC
Q 042919 423 DNEFSG 428 (428)
Q Consensus 423 ~~~~~~ 428 (428)
+|+++|
T Consensus 366 ~N~l~~ 371 (454)
T 1jl5_A 366 YNPLRE 371 (454)
T ss_dssp SSCCSS
T ss_pred CCCCCc
Confidence 999876
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.1e-29 Score=231.71 Aligned_cols=297 Identities=21% Similarity=0.184 Sum_probs=203.2
Q ss_pred eeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccc
Q 042919 42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFN 121 (428)
Q Consensus 42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 121 (428)
+..+.+..+.++++|++|+++++.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+..+ +..
T Consensus 57 l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~ 135 (390)
T 3o6n_A 57 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRG 135 (390)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTT
T ss_pred hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHH
Confidence 4444455578999999999999999977777899999999999999999977788899999999999999998866 223
Q ss_pred cccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCC
Q 042919 122 SLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTK 201 (428)
Q Consensus 122 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 201 (428)
.+..+++|++|++++|.+.... +..+..+++|+.|++++|.+.... ...+++
T Consensus 136 ~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~ 187 (390)
T 3o6n_A 136 IFHNTPKLTTLSMSNNNLERIE------------------------DDTFQATTSLQNLQLSSNRLTHVD----LSLIPS 187 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCBCC------------------------TTTTSSCTTCCEEECCSSCCSBCC----GGGCTT
T ss_pred HhcCCCCCcEEECCCCccCccC------------------------hhhccCCCCCCEEECCCCcCCccc----cccccc
Confidence 4577777777777766553221 122333444444444444444221 123455
Q ss_pred CCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcC
Q 042919 202 LDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSS 281 (428)
Q Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (428)
|+.++++++.+... ...++|++|+++++.+. .++... .++|+.|++++|.+.+. ..+..+++|++|++++
T Consensus 188 L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 188 LFHANVSYNLLSTL----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp CSEEECCSSCCSEE----ECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred cceeeccccccccc----CCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 55555555544322 12235666666666654 222222 46788888888877643 5677788888888888
Q ss_pred cccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCC
Q 042919 282 NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIP 360 (428)
Q Consensus 282 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 360 (428)
|.+. ......+..+++|+.|++++|.+..... ...+++|++|++++|.+.. .+..+..+++|+.|++++|.++.. +
T Consensus 258 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~ 334 (390)
T 3o6n_A 258 NELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K 334 (390)
T ss_dssp SCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred CcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C
Confidence 8776 3333446677788888888877765443 4567788888888887763 444566778888888888887633 3
Q ss_pred cccCCCCCCcEEeCCCCcCCcC
Q 042919 361 PWFGNLSGLQFLDISENQLCGS 382 (428)
Q Consensus 361 ~~~~~~~~L~~L~L~~~~~~~~ 382 (428)
+..+++|+.|++++|++...
T Consensus 335 --~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp --CCTTCCCSEEECCSSCEEHH
T ss_pred --chhhccCCEEEcCCCCccch
Confidence 66677888888888877653
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-28 Score=222.63 Aligned_cols=264 Identities=21% Similarity=0.265 Sum_probs=212.1
Q ss_pred CccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919 153 QLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS 231 (428)
Q Consensus 153 ~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 231 (428)
+++.|++++|.+..++. .+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+....... .++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKELPEKM--PKTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCCccChhh--cccccEEECC
Confidence 47777777777766654 56777888888888888776555544 57888888888888777543322 3789999999
Q ss_pred CCccccCCCchhhhcCCCCcEEEccCCCCCC--CCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccc
Q 042919 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEG--RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL 309 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 309 (428)
+|.+. ..+......+++|+.|++++|.+.. ..+..+..+++|++|++++|.+. .++... .++|+.|++++|.+
T Consensus 130 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l 204 (330)
T 1xku_A 130 ENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKI 204 (330)
T ss_dssp SSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCC
T ss_pred CCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcC
Confidence 99887 4444444458999999999998863 56677889999999999999987 555433 37999999999998
Q ss_pred cccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 310 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 310 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
.... .+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 8654 4889999999999999998877778999999999999999998 788889999999999999999998777666
Q ss_pred -------ccccCceEEccCCcCCc--cCCcccccCCCCCEEECCCCc
Q 042919 388 -------NLSSLRRLYMHMNAFNG--SIPGALRRSLSLTVLDLRDNE 425 (428)
Q Consensus 388 -------~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 425 (428)
..++++.|++++|++.. +.|..|..+++++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 24789999999999863 567889999999999999985
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.3e-28 Score=222.15 Aligned_cols=263 Identities=21% Similarity=0.254 Sum_probs=206.3
Q ss_pred CccEEEcCCCCCccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919 153 QLKALNLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS 231 (428)
Q Consensus 153 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 231 (428)
+++.|++++|.+..++ ..+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+........ ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF-SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS-TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh-hCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 3666777777666553 356677777777777777765444443 567777888887777765433322 788888888
Q ss_pred CCccccCCCchhhhcCCCCcEEEccCCCCCC--CCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccc
Q 042919 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEG--RIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL 309 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 309 (428)
+|.+. .++......+++|+.|++++|.+.. ..+..+..+ +|++|++++|.+. .++... .++|+.|++++|.+
T Consensus 132 ~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 132 DNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKI 205 (332)
T ss_dssp SSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCC
T ss_pred CCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcC
Confidence 88887 4555444458999999999998853 456667777 8999999999987 465543 37999999999998
Q ss_pred cccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 310 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 310 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
.... .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 8765 3889999999999999999888788999999999999999998 788889999999999999999998777665
Q ss_pred -c------cccCceEEccCCcCC--ccCCcccccCCCCCEEECCCCc
Q 042919 388 -N------LSSLRRLYMHMNAFN--GSIPGALRRSLSLTVLDLRDNE 425 (428)
Q Consensus 388 -~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 425 (428)
. .++|+.|++.+|++. ...|..|..+++|+.+++++|+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2 478999999999987 5778889999999999999985
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=8.4e-32 Score=256.40 Aligned_cols=390 Identities=21% Similarity=0.203 Sum_probs=285.1
Q ss_pred ceEEEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCC----CchHhhhcCCCCCEEEccCCccCcchhhhh-
Q 042919 24 SITYLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYG----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVI- 98 (428)
Q Consensus 24 ~~~~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~- 98 (428)
.++++.+.. ..+.+.+. ...+..+++|++|++++|.+.+ .++..+..+++|++|+++++.+....+..+
T Consensus 4 ~l~~L~Ls~--~~l~~~~~----~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 4 DIQSLDIQC--EELSDARW----AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEES--CCCCHHHH----HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred cceehhhhh--cccCchhH----HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 466777754 23333331 1235688999999999999874 345677888999999999998875444433
Q ss_pred ccCC----CCcEEeCCCCccCCcc---ccccccCCCCCcEEEccCCccccccC-CCC---CCCcCCccEEEcCCCCCcc-
Q 042919 99 ANIK----SLEYLSLDDNNFEGLF---SFNSLKNHSKLQVFKLSNSLVKIETE-EFP---GLPEYQLKALNLRNCSLQA- 166 (428)
Q Consensus 99 ~~l~----~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~---~~~~~~L~~L~l~~~~~~~- 166 (428)
..++ +|++|++++|.+.+.. .+..+..+++|++|++++|.+..... .+. ..+.++|++|++++|.+..
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 3455 7999999999887531 24578899999999999988743211 111 1112359999999998853
Q ss_pred ----chhHhhhCCCccEEEccCCcCCCCCchhhhh----cCCCCCEEEecCCccCCc-----ccCCCCCCCccEEecCCC
Q 042919 167 ----LPSILLQQLDLRFIDLSHNKLQGIFPSWLLQ----NNTKLDTLYLLNNSLSGN-----FQLPSSKHDLLRLDISHN 233 (428)
Q Consensus 167 ----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~ 233 (428)
++..+..+++|++|++++|.+.+.....+.. ..++|+.|++++|.+... ......+++|++|++++|
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 5677888899999999999987654444433 356999999999988752 233446789999999999
Q ss_pred ccccCCCchh----hhcCCCCcEEEccCCCCCCC----CCccccCCCCCCEEECcCcccCCCCchhh----hcCCCCCCE
Q 042919 234 KFSCQLPGNM----GKILPELLSLNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGELPRQF----LSGCFSLSF 301 (428)
Q Consensus 234 ~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~ 301 (428)
.+.+.....+ ...+++|++|++++|.++.. .+..+..+++|++|++++|.+.+...... ....++|+.
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 8864432222 22378999999999988753 45667779999999999998763322221 123369999
Q ss_pred EeCCCcccccccc------cCCCCCcceeecccCccCccchhhhhc-----CCCCcEEEccCCcccc----cCCcccCCC
Q 042919 302 LSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKIQDGLSK-----ATSLLELDLSNNMLYG----QIPPWFGNL 366 (428)
Q Consensus 302 L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~i~~----~~~~~~~~~ 366 (428)
|++++|.+..... +..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 9999999886532 567799999999999988765555543 6899999999999986 567788889
Q ss_pred CCCcEEeCCCCcCCcCCCCcc------ccccCceEEccCCcCCccCCccc----ccCCCCCEE
Q 042919 367 SGLQFLDISENQLCGSVPSSF------NLSSLRRLYMHMNAFNGSIPGAL----RRSLSLTVL 419 (428)
Q Consensus 367 ~~L~~L~L~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L 419 (428)
++|++|++++|++++.....+ ...+|+.|++.++.+....+..+ ...|+|+.+
T Consensus 398 ~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 398 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 999999999999886544443 23479999999998875444433 335666654
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.6e-31 Score=262.46 Aligned_cols=374 Identities=14% Similarity=0.099 Sum_probs=229.7
Q ss_pred CCCCCcEEeccCCcCCCCchHhhhc-CCC-CCEEEccCCc-cCc-chhhhhccCCCCcEEeCCCCccCCccc---ccccc
Q 042919 52 ELKNLVELDLSKNNLYGHLSPCLSN-LTH-IKVLDLSSNQ-LTG-NLQSVIANIKSLEYLSLDDNNFEGLFS---FNSLK 124 (428)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~ 124 (428)
++++|++|+++++.+++..+..+.. ++. |++|++.+|. +.. ..+.....+++|++|++++|.+.+... .....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6788888888888777655555555 344 8888888875 221 223344578888888888887655421 12456
Q ss_pred CCCCCcEEEccCCcccc-c----cCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCC---CCCchhhh
Q 042919 125 NHSKLQVFKLSNSLVKI-E----TEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQ---GIFPSWLL 196 (428)
Q Consensus 125 ~~~~L~~L~l~~~~~~~-~----~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~ 196 (428)
.+++|++|+++++.+.. . ...+... ++|++|++++|.+..++..+..+++|+.|++++.... .... ..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNC--RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY-MNL 266 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHC--TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS-SCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhC--CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH-HHh
Confidence 77888888888776641 1 1111122 3588888888888778888888888888888753221 0111 112
Q ss_pred hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 042919 197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276 (428)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 276 (428)
..+++|+.+.++++...........+++|++|++++|.+++.....+...+++|++|++.++......+.....+++|++
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 45667777777765444444445567778888888777543333233344777787777733211112233355677888
Q ss_pred EECcC----------c-ccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-CCCCcceeecc----cCccCcc----
Q 042919 277 LDLSS----------N-NFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-NSTNLCWLYLN----NNHFSGK---- 334 (428)
Q Consensus 277 L~l~~----------~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~----~~~~~~~---- 334 (428)
|++++ | .+++.........+++|+.|+++.+.+.+... +. .+++|++|+++ .+.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 88773 2 33322222234457778888776666654332 32 36778888875 3345432
Q ss_pred -chhhhhcCCCCcEEEccCCc--ccccCCccc-CCCCCCcEEeCCCCcCCcCCCCcc--ccccCceEEccCCcCCcc-CC
Q 042919 335 -IQDGLSKATSLLELDLSNNM--LYGQIPPWF-GNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGS-IP 407 (428)
Q Consensus 335 -~~~~l~~~~~L~~L~l~~~~--i~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~-~~ 407 (428)
....+..+++|+.|++++|. +++.....+ ..+++|+.|++++|++++.....+ .+++|+.|++++|+++.. .+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 22335567788888886543 443333333 236778888888887765333322 677888888888886533 34
Q ss_pred cccccCCCCCEEECCCCccCC
Q 042919 408 GALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 408 ~~~~~~~~L~~L~l~~~~~~~ 428 (428)
..+..+++|+.|++++|++++
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhcCccCeeECcCCcCCH
Confidence 444667888888888888764
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.9e-28 Score=237.78 Aligned_cols=295 Identities=21% Similarity=0.199 Sum_probs=196.8
Q ss_pred eeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccc
Q 042919 42 LTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFN 121 (428)
Q Consensus 42 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 121 (428)
+..+.+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+..+ +..
T Consensus 63 l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~ 141 (597)
T 3oja_B 63 MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRG 141 (597)
T ss_dssp ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTT
T ss_pred CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHH
Confidence 4455556678999999999999999988888999999999999999999987788889999999999999998866 334
Q ss_pred cccCCCCCcEEEccCCcccccc-CCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCC
Q 042919 122 SLKNHSKLQVFKLSNSLVKIET-EEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNT 200 (428)
Q Consensus 122 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 200 (428)
.++.+++|++|++++|.+.... ..+...+ +|++|++++|.+..++ +..+++|+.|++++|.+.
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~------------ 205 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATT--SLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS------------ 205 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCT--TCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCS------------
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCC--cCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccc------------
Confidence 4677888777777776653322 2233332 2555555555554443 233445555555544433
Q ss_pred CCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECc
Q 042919 201 KLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLS 280 (428)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (428)
.. ...++|+.|++++|.+. .++..+ .++|+.|++++|.+.+ +.++..+++|++|+++
T Consensus 206 -------------~l----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 206 -------------TL----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLS 262 (597)
T ss_dssp -------------EE----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECC
T ss_pred -------------cc----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECC
Confidence 21 12234555555555543 222211 3567777777776653 3556667777777777
Q ss_pred CcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC
Q 042919 281 SNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI 359 (428)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 359 (428)
+|.+.+ .+...+..+++|+.|++++|.+..... ...+++|+.|++++|.+. ..+..+..+++|+.|++++|.++..
T Consensus 263 ~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~- 339 (597)
T 3oja_B 263 YNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL- 339 (597)
T ss_dssp SSCCCE-EESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred CCccCC-CCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-
Confidence 777663 323335566777777777776665443 445777888888877776 3445566778888888888877633
Q ss_pred CcccCCCCCCcEEeCCCCcCCc
Q 042919 360 PPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 360 ~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
+ +..+++|+.|++++|++.+
T Consensus 340 ~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 340 K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp C--CCTTCCCSEEECCSSCEEH
T ss_pred C--hhhcCCCCEEEeeCCCCCC
Confidence 2 5667788888888887654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=4e-27 Score=213.82 Aligned_cols=242 Identities=22% Similarity=0.278 Sum_probs=139.4
Q ss_pred CCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEc
Q 042919 55 NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL 134 (428)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 134 (428)
+++.++++++.++. +|..+ .++++.|+++++.++...+..+..+++|++|++++|.+.++. +..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEEC
Confidence 68889998888773 44333 268899999999888766667888999999999998887663 356778888888888
Q ss_pred cCCccccccCCCCCCCcCCccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCC-CchhhhhcCCCCCEEEecCCcc
Q 042919 135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGI-FPSWLLQNNTKLDTLYLLNNSL 212 (428)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 212 (428)
+++.+...+..+. .+|++|++++|.+..++. .+..+++|+.|++++|.+... .....+..+++|+.|++++|.+
T Consensus 108 s~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCSBCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCCccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 8776654333322 247777777777755543 456666777777777665421 1111224455555555555544
Q ss_pred CCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhh
Q 042919 213 SGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF 292 (428)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 292 (428)
.. ++..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+...
T Consensus 184 ~~------------------------l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~ 235 (330)
T 1xku_A 184 TT------------------------IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGS 235 (330)
T ss_dssp CS------------------------CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTT
T ss_pred cc------------------------CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhh
Confidence 32 22211 245555555555555444445555555555555555544 222222
Q ss_pred hcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccC
Q 042919 293 LSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFS 332 (428)
Q Consensus 293 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 332 (428)
+..+++|+.|++++|.+..... +..+++|++|++++|.++
T Consensus 236 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp GGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred ccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 3344444444444444332211 333344444444444443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.3e-27 Score=215.45 Aligned_cols=288 Identities=18% Similarity=0.179 Sum_probs=165.6
Q ss_pred CCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEc
Q 042919 55 NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKL 134 (428)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 134 (428)
+++.++++++.++ .+|..+ .++|+.|+++++.+....+..+.++++|++|++++|.+.++. +..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEEC
Confidence 6889999988887 444433 368999999999888666778889999999999999887653 356777788777777
Q ss_pred cCCccccccCCCCCCCcCCccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccC
Q 042919 135 SNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLS 213 (428)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (428)
++|.+...+.... .+|++|++++|.+..++. .+..+++|+.|++++|.+....
T Consensus 110 ~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------- 163 (332)
T 2ft3_A 110 SKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---------------------- 163 (332)
T ss_dssp CSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG----------------------
T ss_pred CCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC----------------------
Confidence 7766543322221 235555555555544443 2444455555555555443100
Q ss_pred CcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhh
Q 042919 214 GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFL 293 (428)
Q Consensus 214 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 293 (428)
........+ +|+.|++++|.+. .++..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~ 237 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSL 237 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGG
T ss_pred CCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHh
Confidence 011111222 5666666666655 344333 256777777777776665566777777777777777765 3333334
Q ss_pred cCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCC------CC
Q 042919 294 SGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGN------LS 367 (428)
Q Consensus 294 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~------~~ 367 (428)
..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+++..+..+.. .+
T Consensus 238 ~~l~~L~~L~L~~N~l~~-----------------------lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLSR-----------------------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp GGCTTCCEEECCSSCCCB-----------------------CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred hCCCCCCEEECCCCcCee-----------------------cChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence 455555555555554442 2223444455555555555554333333332 24
Q ss_pred CCcEEeCCCCcCC--cCCCCcc-ccccCceEEccCCc
Q 042919 368 GLQFLDISENQLC--GSVPSSF-NLSSLRRLYMHMNA 401 (428)
Q Consensus 368 ~L~~L~L~~~~~~--~~~~~~~-~~~~L~~L~l~~~~ 401 (428)
.|+.|++++|++. +..+..+ .+++|+.+++++|+
T Consensus 295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4566666666554 3333334 55666666666553
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.4e-30 Score=255.78 Aligned_cols=412 Identities=14% Similarity=0.099 Sum_probs=287.6
Q ss_pred cccChHHHHHHhccc-ceE-EEeecchhcccCCcc------e------eeeecccccCCCCCcEEeccCCcCC-------
Q 042919 9 IKKPQELWHKFFQKG-SIT-YLSVEDSCRKTNGVP------L------TVFVNTGICELKNLVELDLSKNNLY------- 67 (428)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~-~l~~~~~c~~~~~~~------~------~~~~~~~~~~~~~L~~L~l~~~~~~------- 67 (428)
..+|+++|..+|..- ..+ .......|+.|.++. + ...++..+.++++|++|+++++...
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 468999988887543 221 123344566664321 1 1122334567899999999875321
Q ss_pred ----C----CchHhhhcCCCCCEEEccCCccCcchhhhhcc-CC-CCcEEeCCCCcc-CCccccccccCCCCCcEEEccC
Q 042919 68 ----G----HLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN-IK-SLEYLSLDDNNF-EGLFSFNSLKNHSKLQVFKLSN 136 (428)
Q Consensus 68 ----~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~ 136 (428)
+ .++.....+++|++|+++++.+....+..+.. ++ +|++|++++|.- ..........++++|++|++++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 1 12223348999999999999887655665655 44 499999999862 2111122345899999999999
Q ss_pred CccccccCC-----CCCCCcCCccEEEcCCCCCc-----cchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEE
Q 042919 137 SLVKIETEE-----FPGLPEYQLKALNLRNCSLQ-----ALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLY 206 (428)
Q Consensus 137 ~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 206 (428)
|.+...... .... ++|++|+++++.+. .++..+..+++|+.|++++|.+.. .+ ..+..+++|+.|.
T Consensus 174 ~~~~~~~~~~l~~~~~~~--~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~ 249 (592)
T 3ogk_B 174 SSFSEKDGKWLHELAQHN--TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFC 249 (592)
T ss_dssp CEEECCCSHHHHHHHHHC--CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEE
T ss_pred ccccCcchhHHHHHHhcC--CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhc
Confidence 976432211 1122 35999999999875 566677889999999999988774 33 4457899999999
Q ss_pred ecCCccC----CcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcC
Q 042919 207 LLNNSLS----GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSS 281 (428)
Q Consensus 207 l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~ 281 (428)
++..... ........+++|+.+.+++.... .++. +...+++|++|++++|.+.+... ..+..+++|++|++.
T Consensus 250 l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~- 326 (592)
T 3ogk_B 250 GGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR- 326 (592)
T ss_dssp ECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-
T ss_pred ccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-
Confidence 9864322 22334567789999999875332 3343 34448899999999998653322 346789999999999
Q ss_pred cccCCCCchhhhcCCCCCCEEeCCC-----------cccccccc---cCCCCCcceeecccCccCccchhhhhc-CCCCc
Q 042919 282 NNFSGELPRQFLSGCFSLSFLSLSD-----------NHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGLSK-ATSLL 346 (428)
Q Consensus 282 ~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~ 346 (428)
+.+.+.........+++|+.|++.+ +.+..... ...+++|++|++..+.+++.....+.. +++|+
T Consensus 327 ~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~ 406 (592)
T 3ogk_B 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLC 406 (592)
T ss_dssp GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCC
T ss_pred CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCc
Confidence 4443333344456789999999993 44443322 456899999999888888777777765 89999
Q ss_pred EEEcc----CCccccc-----CCcccCCCCCCcEEeCCCCc--CCcCCCCcc--ccccCceEEccCCcCCc-cCCccccc
Q 042919 347 ELDLS----NNMLYGQ-----IPPWFGNLSGLQFLDISENQ--LCGSVPSSF--NLSSLRRLYMHMNAFNG-SIPGALRR 412 (428)
Q Consensus 347 ~L~l~----~~~i~~~-----~~~~~~~~~~L~~L~L~~~~--~~~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~ 412 (428)
+|++. .+.+++. ++..+.++++|++|++++|. +++.....+ .+++|+.|++++|.+++ ..+..+..
T Consensus 407 ~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 407 DFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp EEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred EEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 99996 5567643 23346678999999998764 555544444 58999999999999875 34556688
Q ss_pred CCCCCEEECCCCccC
Q 042919 413 SLSLTVLDLRDNEFS 427 (428)
Q Consensus 413 ~~~L~~L~l~~~~~~ 427 (428)
+++|++|++++|+++
T Consensus 487 ~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFS 501 (592)
T ss_dssp CTTCCEEEEESCCCB
T ss_pred CcccCeeeccCCCCc
Confidence 999999999999976
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=9.6e-28 Score=215.72 Aligned_cols=244 Identities=30% Similarity=0.468 Sum_probs=157.7
Q ss_pred CccEEEcCCCCCc---cchhHhhhCCCccEEEccC-CcCCCCCchhhhhcCCCCCEEEecCCccCC-cccCCCCCCCccE
Q 042919 153 QLKALNLRNCSLQ---ALPSILLQQLDLRFIDLSH-NKLQGIFPSWLLQNNTKLDTLYLLNNSLSG-NFQLPSSKHDLLR 227 (428)
Q Consensus 153 ~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~ 227 (428)
+++.|+++++.+. .+|..+..+++|+.|++++ +.+....+..+ ..+++|++|++++|.+.+ .......+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 5999999999886 5888999999999999995 77776777665 578888888888888763 3334556677777
Q ss_pred EecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCC-CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCC
Q 042919 228 LDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMK-RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSD 306 (428)
Q Consensus 228 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 306 (428)
|++++|.+.+..+..+.. +++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+.. +..+. |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence 777777776556655554 67777777777776655666666666 6777777777665444433 33443 66666666
Q ss_pred cccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919 307 NHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP 384 (428)
Q Consensus 307 ~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 384 (428)
|.+....+ +..+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++..+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 66553322 45555666666666655533332 4455556666666655555555555555556666666655555444
Q ss_pred CccccccCceEEccCCc
Q 042919 385 SSFNLSSLRRLYMHMNA 401 (428)
Q Consensus 385 ~~~~~~~L~~L~l~~~~ 401 (428)
....+++|+.+++++|+
T Consensus 286 ~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CSTTGGGSCGGGTCSSS
T ss_pred CCccccccChHHhcCCC
Confidence 44445555555555555
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=6.2e-27 Score=210.45 Aligned_cols=248 Identities=25% Similarity=0.397 Sum_probs=205.1
Q ss_pred CCccEEEccCCcCCC--CCchhhhhcCCCCCEEEecC-CccCC-cccCCCCCCCccEEecCCCccccCCCchhhhcCCCC
Q 042919 175 LDLRFIDLSHNKLQG--IFPSWLLQNNTKLDTLYLLN-NSLSG-NFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL 250 (428)
Q Consensus 175 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 250 (428)
.+++.|+++++.+.. ..+..+ ..+++|++|++++ +.+.+ .+.....+++|++|++++|.+.+..+..+.. +++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCC
Confidence 478999999999886 566655 6899999999995 76654 3445568889999999999988777777766 8999
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCC-CCCEEeCCCcccccccc--cCCCCCcceeecc
Q 042919 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCF-SLSFLSLSDNHLQGEVV--FPNSTNLCWLYLN 327 (428)
Q Consensus 251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~ 327 (428)
++|++++|.+.+..+..+..+++|++|++++|.+.+.++.. +..++ .|+.|++++|.+....+ +..++ |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 99999999988778888999999999999999987666655 45665 89999999998874433 55555 9999999
Q ss_pred cCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccC
Q 042919 328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSI 406 (428)
Q Consensus 328 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 406 (428)
+|.+.+..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|++++..+..+ .+++|+.|++++|++++..
T Consensus 206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 9999888888888999999999999998855554 7888999999999999988888777 8899999999999998888
Q ss_pred CcccccCCCCCEEECCCCc-cCC
Q 042919 407 PGALRRSLSLTVLDLRDNE-FSG 428 (428)
Q Consensus 407 ~~~~~~~~~L~~L~l~~~~-~~~ 428 (428)
|.. +.+++|+.+++++|+ +.|
T Consensus 285 p~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCC-ccccccChHHhcCCCCccC
Confidence 876 788999999999997 443
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.5e-26 Score=206.36 Aligned_cols=243 Identities=25% Similarity=0.284 Sum_probs=120.0
Q ss_pred cEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc---ccCCCCCCCccEEecC
Q 042919 155 KALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN---FQLPSSKHDLLRLDIS 231 (428)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~ 231 (428)
+.++.+++++..+|..+. ++|++|++++|.+. ..+..++..+++|++|++++|.+... ......+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 345555555555655332 36666666666665 23333334556666666665554421 0111123444455554
Q ss_pred CCccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (428)
+|.+. .++..+.. +++|++|++++|.+....+ ..+..+++|++|++++|.+.+ .....+..+++|+.|++++|.+.
T Consensus 87 ~n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 87 FNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp SCSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCccc
Confidence 44443 22333322 5566666666665543322 345555666666666655542 22233444555555555555554
Q ss_pred c---ccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 311 G---EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 311 ~---~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
+ ...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 3 1124445555555555555554444445555555555555555544334444555555555555555554444444
Q ss_pred -cc-ccCceEEccCCcCC
Q 042919 388 -NL-SSLRRLYMHMNAFN 403 (428)
Q Consensus 388 -~~-~~L~~L~l~~~~~~ 403 (428)
.+ ++|+.|++++|++.
T Consensus 244 ~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCTTCCEEECTTCCEE
T ss_pred HhhhccCCEEEccCCCee
Confidence 33 25555555555554
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.6e-30 Score=252.28 Aligned_cols=374 Identities=16% Similarity=0.147 Sum_probs=208.4
Q ss_pred cCCCCCcEEeccCCcCCCCchHhhh-cCCCCCEEEccCC-ccCcc-hhhhhccCCCCcEEeCCCCccCCccc---ccccc
Q 042919 51 CELKNLVELDLSKNNLYGHLSPCLS-NLTHIKVLDLSSN-QLTGN-LQSVIANIKSLEYLSLDDNNFEGLFS---FNSLK 124 (428)
Q Consensus 51 ~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~ 124 (428)
..+++|++|+++++.+++..+..+. .+++|++|++.+| .+... .+..+.++++|++|++++|.+.+... .....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4678888888888887766565564 6888888888888 44432 34444578888888888887665422 12234
Q ss_pred CCCCCcEEEccCCccccccCCCCCC--CcCCccEEEcCCC-CCccchhHhhhCCCccEEEccCCcCCC------CCchhh
Q 042919 125 NHSKLQVFKLSNSLVKIETEEFPGL--PEYQLKALNLRNC-SLQALPSILLQQLDLRFIDLSHNKLQG------IFPSWL 195 (428)
Q Consensus 125 ~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~------~~~~~~ 195 (428)
.+++|++|+++++........+... ..++|++|++++| .+..++..+..+++|+.|+++.+.... ..+. .
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-A 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-H
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-H
Confidence 6778888888876511111111100 1235888888887 445577777888888888866543210 0111 1
Q ss_pred hhcCCCCCEE-EecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCC-CCccccCCCC
Q 042919 196 LQNNTKLDTL-YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR-IPSSMSEMKR 273 (428)
Q Consensus 196 ~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 273 (428)
+..+++|+.+ .+..............+++|++|++++|.+++.....+...+++|++|++.+| +.+. .......+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 2455666665 22222211111122245677777777776543333333334677777777766 2211 1112224667
Q ss_pred CCEEECcC---------cccCCCCchhhhcCCCCCCEEeCCCcccccccc--c-CCCCCcceeecc--c----CccCcc-
Q 042919 274 LESLDLSS---------NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--F-PNSTNLCWLYLN--N----NHFSGK- 334 (428)
Q Consensus 274 L~~L~l~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~--~----~~~~~~- 334 (428)
|++|++.+ +.+++.........+++|+.|.+.++.+.+... + ..+++|++|+++ + +.+++.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 77776633 222211112222346677777666665554332 2 246677777776 2 233311
Q ss_pred ----chhhhhcCCCCcEEEccCCcccccCCcccCC-CCCCcEEeCCCCcCCcCCCCcc--ccccCceEEccCCcCCccCC
Q 042919 335 ----IQDGLSKATSLLELDLSNNMLYGQIPPWFGN-LSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIP 407 (428)
Q Consensus 335 ----~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~ 407 (428)
....+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++.....+ .+++|+.|++++|+++....
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 112245567777777765 444333333433 6677777777777655444333 46777777777777643322
Q ss_pred -cccccCCCCCEEECCCCccC
Q 042919 408 -GALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 408 -~~~~~~~~L~~L~l~~~~~~ 427 (428)
..+..+++|+.|++++|+++
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhCCCCCEEeeeCCCCC
Confidence 23345677777777777653
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=208.25 Aligned_cols=270 Identities=23% Similarity=0.192 Sum_probs=195.6
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCC
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISH 232 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 232 (428)
....+.++++++.+|..+. ++|++|++++|.+....+.. +..+++|+.|++++|.+.... .....+++|++|++++
T Consensus 33 ~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHH-hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3345666666666665443 36777777777766433323 356777777777777766543 2355677888888888
Q ss_pred CccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc
Q 042919 233 NKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 311 (428)
Q Consensus 233 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 311 (428)
|.+. .++......+++|++|++++|.+..... ..+..+++|++|++++|...+.++...+..+++|+.|++++|.+..
T Consensus 110 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 8877 4555544448899999999998875444 4788899999999998853335555567788899999999988876
Q ss_pred cc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccC---CCCCCcEEeCCCCcCCcC----
Q 042919 312 EV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFG---NLSGLQFLDISENQLCGS---- 382 (428)
Q Consensus 312 ~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---~~~~L~~L~L~~~~~~~~---- 382 (428)
.. .+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+. ..+.++.++++++.+.+.
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 53 378889999999999988765555566789999999999998865443332 356788888888877653
Q ss_pred CCCcc-ccccCceEEccCCcCCccCCcc-cccCCCCCEEECCCCccCC
Q 042919 383 VPSSF-NLSSLRRLYMHMNAFNGSIPGA-LRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 383 ~~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 428 (428)
.+..+ .+++|+.|++++|+++ .+|.. |+.+++|+.|++++|+++|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 23333 6889999999999998 45544 6889999999999999876
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.3e-25 Score=209.09 Aligned_cols=244 Identities=22% Similarity=0.225 Sum_probs=161.3
Q ss_pred EEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCc
Q 042919 156 ALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNK 234 (428)
Q Consensus 156 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 234 (428)
.++..+.++..+|..+. ++++.|++++|.+....+..+ ..+++|+.|++++|.+.... .....+++|++|++++|.
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34444444444443222 355555555555553333322 45555555555555554432 233455666666666666
Q ss_pred cccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc
Q 042919 235 FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV 314 (428)
Q Consensus 235 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 314 (428)
+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|...+.++...+..+++|+.|++++|.+.....
T Consensus 135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 213 (452)
T 3zyi_A 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213 (452)
T ss_dssp CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC
T ss_pred CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc
Confidence 65 33433333467778888877777755556677778888888877554446666667777888888888887777666
Q ss_pred cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCc
Q 042919 315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLR 393 (428)
Q Consensus 315 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~ 393 (428)
+..+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+.++++|+.|+|++|++++..+..+ .+++|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 7777888888888888877777778888888888888888876777777888888888888888876666665 677888
Q ss_pred eEEccCCcCC
Q 042919 394 RLYMHMNAFN 403 (428)
Q Consensus 394 ~L~l~~~~~~ 403 (428)
.|++++|++.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 8888888764
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.7e-25 Score=208.85 Aligned_cols=244 Identities=21% Similarity=0.218 Sum_probs=152.7
Q ss_pred EEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCc
Q 042919 156 ALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNK 234 (428)
Q Consensus 156 ~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 234 (428)
.++..+.++..+|..+. ++++.|++++|.+....+..+ ..+++|++|++++|.+.... .....+++|++|++++|.
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 34444444444443322 345555555555443322222 34555555555555444322 223345555666666655
Q ss_pred cccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc
Q 042919 235 FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV 314 (428)
Q Consensus 235 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 314 (428)
+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|...+.++...+..+++|+.|++++|.+.....
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 55 33333333367777777777777655555677777777777777554445555566677777777777777776666
Q ss_pred cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCc
Q 042919 315 FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLR 393 (428)
Q Consensus 315 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~ 393 (428)
+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|.++++|+.|+|++|++++..+..+ .+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 7777777777777777776666777777777777777777776667777777777777777777776666655 677777
Q ss_pred eEEccCCcCC
Q 042919 394 RLYMHMNAFN 403 (428)
Q Consensus 394 ~L~l~~~~~~ 403 (428)
.|++++|++.
T Consensus 283 ~L~L~~Np~~ 292 (440)
T 3zyj_A 283 RIHLHHNPWN 292 (440)
T ss_dssp EEECCSSCEE
T ss_pred EEEcCCCCcc
Confidence 7777777764
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.4e-25 Score=199.48 Aligned_cols=201 Identities=21% Similarity=0.294 Sum_probs=145.8
Q ss_pred CCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhh--------h
Q 042919 222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQF--------L 293 (428)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------~ 293 (428)
+++|++|++++|.+. .++..+.. +++|++|++++|.+. ..|..+..+++|++|++++|...+.++... +
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 344444444444444 44444433 566666666666665 445556666666666666655544444332 2
Q ss_pred cCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEE
Q 042919 294 SGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFL 372 (428)
Q Consensus 294 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 372 (428)
..+++|+.|++++|.+..... +..+++|++|++++|.+.+ .+..+..+++|+.|++++|.+.+.+|..+.++++|+.|
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 347777777777777764432 6777888888888888875 44468888999999999988887888889999999999
Q ss_pred eCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919 373 DISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426 (428)
Q Consensus 373 ~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 426 (428)
++++|++.+..+..+ .+++|+.|++++|++.+.+|..++.+++|+.+++..+.+
T Consensus 259 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 999998888888777 889999999999999889999999999999999887754
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.6e-25 Score=198.82 Aligned_cols=266 Identities=21% Similarity=0.204 Sum_probs=189.3
Q ss_pred cEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc-ccCCCCCCCccEEecCCC
Q 042919 155 KALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-FQLPSSKHDLLRLDISHN 233 (428)
Q Consensus 155 ~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 233 (428)
++++.+++++..+|..+ .++|+.|+++++.+....+.. +..+++|++|++++|.+... ......+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHH-cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34555555555555432 346666666666665433322 24566666666666665543 234456677777777777
Q ss_pred c-cccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc
Q 042919 234 K-FSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE 312 (428)
Q Consensus 234 ~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 312 (428)
. +....+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+...
T Consensus 91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCccccc
Confidence 6 4422233343 3788888888888888777777888888999999988887 56655577888899999988888765
Q ss_pred cc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccc
Q 042919 313 VV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLS 390 (428)
Q Consensus 313 ~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 390 (428)
.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++...........
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 54 7788999999999999887778888899999999999999986666778999999999999998875444322334
Q ss_pred cCceEEccCCcCCccCCccccc--CCCCCEEECCCCc
Q 042919 391 SLRRLYMHMNAFNGSIPGALRR--SLSLTVLDLRDNE 425 (428)
Q Consensus 391 ~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~ 425 (428)
.++.+....+.+....|..+.. +..++..++.||+
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA 285 (285)
T ss_dssp HHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred HHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence 5666677777777777877654 5677777788774
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=2.6e-25 Score=199.68 Aligned_cols=261 Identities=21% Similarity=0.198 Sum_probs=197.5
Q ss_pred CccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCC--chhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEe
Q 042919 153 QLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIF--PSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLD 229 (428)
Q Consensus 153 ~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 229 (428)
++++|++++|.+..+|.. +..+++|+.|++++|.+.... +..+ ..+++|++|++++|.+.........+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 477777777777666654 467777888888777766332 2333 357778888888877766544556778888888
Q ss_pred cCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccc
Q 042919 230 ISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHL 309 (428)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 309 (428)
+++|.+...........+++|++|++++|.+....+..+..+++|++|++++|.+.+......+..+++|+.|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 88888764333233334889999999999888777778888999999999999887433334467889999999999998
Q ss_pred cccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCC-CCcEEeCCCCcCCcCCCCc
Q 042919 310 QGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLS-GLQFLDISENQLCGSVPSS 386 (428)
Q Consensus 310 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~ 386 (428)
.... .+..+++|++|++++|.+++.....+..+++|+.|++++|.+++..+..+..++ +|++|++++|+++......
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 8763 378899999999999999887777888999999999999999988888899885 9999999999987643322
Q ss_pred -c--ccccCceEEccCCcCCccCCcccccCC
Q 042919 387 -F--NLSSLRRLYMHMNAFNGSIPGALRRSL 414 (428)
Q Consensus 387 -~--~~~~L~~L~l~~~~~~~~~~~~~~~~~ 414 (428)
+ .+...+.+.+..+.+....|..+++.+
T Consensus 268 ~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 268 SFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp HHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred HHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 1 345666677777777767777766543
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.2e-23 Score=204.19 Aligned_cols=258 Identities=23% Similarity=0.270 Sum_probs=133.9
Q ss_pred CCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEE
Q 042919 102 KSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFID 181 (428)
Q Consensus 102 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 181 (428)
.+++.|+++++.++.+. ..+. ++|++|++++|.+...+. ..++|++|++++|.+..+|. .+++|+.|+
T Consensus 40 ~~l~~L~ls~n~L~~lp--~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLP--DCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCC--SCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccC--hhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEE
Confidence 46899999999888652 2222 677777777666543322 12246666666666666655 455666666
Q ss_pred ccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCC
Q 042919 182 LSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFE 261 (428)
Q Consensus 182 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 261 (428)
+++|.+..... .+++|+.|++++|.+..... .+++|+.|++++|.+. .++. .+++|+.|++++|.+.
T Consensus 108 Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 108 IFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT 174 (622)
T ss_dssp ECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred CcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCC
Confidence 66666553221 34556666666665544222 2355555555555544 2221 1344555555555554
Q ss_pred CCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhc
Q 042919 262 GRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSK 341 (428)
Q Consensus 262 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 341 (428)
. .+ ..+++|++|++++|.+. .++. .+++|+.|++++|.++... . .
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~-~l~~--------------------------~~~~L~~L~L~~N~l~~l~-~---~ 219 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLA-SLPT--------------------------LPSELYKLWAYNNRLTSLP-A---L 219 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCS-CCCC--------------------------CCTTCCEEECCSSCCSSCC-C---C
T ss_pred C-Cc---ccCCCCcEEECCCCCCC-CCCC--------------------------ccchhhEEECcCCcccccC-C---C
Confidence 2 22 23445555555555444 2221 1244455555554444221 1 1
Q ss_pred CCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEEC
Q 042919 342 ATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDL 421 (428)
Q Consensus 342 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 421 (428)
+++|+.|++++|.+++ +| ..+++|+.|++++|+++.... .+++|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 220 ~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 3455555555555552 33 233555555555555553222 3455555555555555 44555555555555555
Q ss_pred CCCccC
Q 042919 422 RDNEFS 427 (428)
Q Consensus 422 ~~~~~~ 427 (428)
++|+++
T Consensus 292 ~~N~l~ 297 (622)
T 3g06_A 292 EGNPLS 297 (622)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 555554
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.6e-24 Score=192.34 Aligned_cols=203 Identities=25% Similarity=0.266 Sum_probs=122.2
Q ss_pred CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcc-cCCCCchhhhcCCCCCCE
Q 042919 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN-FSGELPRQFLSGCFSLSF 301 (428)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~ 301 (428)
+++++|+++++.+....+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++...+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCE
Confidence 3455555555555422222232 25566666666666654445556666666666666665 33 443344555666666
Q ss_pred EeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919 302 LSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379 (428)
Q Consensus 302 L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~ 379 (428)
|++++|.+..... +..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 6666666554433 55666666666666666655555566666777777777766644455566666777777777766
Q ss_pred CcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 380 CGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 380 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
++..+..+ .+++|+.|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 66655555 5667777777777766555555666777777777777654
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=199.69 Aligned_cols=278 Identities=23% Similarity=0.227 Sum_probs=181.6
Q ss_pred CCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcE
Q 042919 52 ELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQV 131 (428)
Q Consensus 52 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 131 (428)
.|+.....+.+++.++ .+|..+. ++|++|+++++.++...+..+..+++|++|++++|.+.++.+ ..+.++++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~--- 101 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGS--- 101 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTT---
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCC---
Confidence 4455555677777776 3343332 478888888887775555577778888888888877664421 22333333
Q ss_pred EEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCC
Q 042919 132 FKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNN 210 (428)
Q Consensus 132 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 210 (428)
|++|++++|.+..++.. +..+++|++|++++|.+........+..+++|++|++++|
T Consensus 102 ----------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 102 ----------------------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp ----------------------CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred ----------------------CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 55566666666566554 6677788888888887764332123345666666666655
Q ss_pred ccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCch
Q 042919 211 SLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPR 290 (428)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 290 (428)
.. +. .++......+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++.
T Consensus 160 ~~----------------------~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~ 215 (353)
T 2z80_A 160 DT----------------------FT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215 (353)
T ss_dssp SS----------------------CC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHH
T ss_pred cc----------------------cc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchh
Confidence 31 11 222222222667777777777776666677777778888888877765 5555
Q ss_pred hhhcCCCCCCEEeCCCcccccccc-----cCCCCCcceeecccCccCcc----chhhhhcCCCCcEEEccCCcccccCCc
Q 042919 291 QFLSGCFSLSFLSLSDNHLQGEVV-----FPNSTNLCWLYLNNNHFSGK----IQDGLSKATSLLELDLSNNMLYGQIPP 361 (428)
Q Consensus 291 ~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~~~~ 361 (428)
..+..+++|+.|++++|.+..... ......++.+++.++.+.+. .+..+..+++|+.|++++|.++ .+|.
T Consensus 216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~ 294 (353)
T 2z80_A 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD 294 (353)
T ss_dssp HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT
T ss_pred hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH
Confidence 555667788888888777765332 23456777888887776642 4556788899999999999998 4454
Q ss_pred c-cCCCCCCcEEeCCCCcCCcCC
Q 042919 362 W-FGNLSGLQFLDISENQLCGSV 383 (428)
Q Consensus 362 ~-~~~~~~L~~L~L~~~~~~~~~ 383 (428)
. +.++++|++|++++|++.+..
T Consensus 295 ~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 295 GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHhcCCCCCEEEeeCCCccCcC
Confidence 4 588899999999999887543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.1e-24 Score=201.66 Aligned_cols=244 Identities=22% Similarity=0.178 Sum_probs=206.8
Q ss_pred CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919 176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN 254 (428)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 254 (428)
..+.++..+..+. .+|..+ .++++.|++++|.+.... ..+..+++|++|++++|.+.. ++...+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEE
Confidence 3567777777776 444433 478999999999988754 456789999999999999984 4434444589999999
Q ss_pred ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccc---cccCCCCCcceeecccCcc
Q 042919 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGE---VVFPNSTNLCWLYLNNNHF 331 (428)
Q Consensus 255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 331 (428)
+++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|..... ..+..+++|++|++++|.+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 9999999777778999999999999999987 67766788999999999998654332 2378899999999999998
Q ss_pred CccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccc
Q 042919 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL 410 (428)
Q Consensus 332 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 410 (428)
+... .+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+..+ .+++|+.|++++|+++...+..|
T Consensus 198 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 198 REIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp SSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 8543 47889999999999999998889999999999999999999998888888 89999999999999997778888
Q ss_pred ccCCCCCEEECCCCccC
Q 042919 411 RRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 411 ~~~~~L~~L~l~~~~~~ 427 (428)
..+++|+.|++++||+.
T Consensus 276 ~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SSCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEcCCCCcc
Confidence 99999999999999974
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.8e-27 Score=233.81 Aligned_cols=415 Identities=17% Similarity=0.113 Sum_probs=276.5
Q ss_pred ccccChHHHHHHhcccc-eE-EEeecchhcccCCcce---ee---------eecccccCCCCCcEEeccCCcCCC---C-
Q 042919 8 IIKKPQELWHKFFQKGS-IT-YLSVEDSCRKTNGVPL---TV---------FVNTGICELKNLVELDLSKNNLYG---H- 69 (428)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~-~l~~~~~c~~~~~~~~---~~---------~~~~~~~~~~~L~~L~l~~~~~~~---~- 69 (428)
...+|++++..+|..-. .+ .......|+.|.++.. .. .....+.++++|++|+++++.... .
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~ 85 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLV 85 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCS
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccc
Confidence 34679998888775433 22 2344456766654310 00 011235578999999999875211 1
Q ss_pred -----------chHhhhcCCCCCEEEccCCccCcchhhhhc-cCCCCcEEeCCCC-ccCCccccccccCCCCCcEEEccC
Q 042919 70 -----------LSPCLSNLTHIKVLDLSSNQLTGNLQSVIA-NIKSLEYLSLDDN-NFEGLFSFNSLKNHSKLQVFKLSN 136 (428)
Q Consensus 70 -----------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~ 136 (428)
+......+++|++|+++++.+....+..+. .+++|++|++++| .+.+.........+++|++|++++
T Consensus 86 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 165 (594)
T 2p1m_B 86 PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE 165 (594)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTT
T ss_pred cccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcC
Confidence 123345789999999999988866666665 7999999999999 444422234455899999999999
Q ss_pred CccccccC-CCCCC--CcCCccEEEcCCCC--C--ccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecC
Q 042919 137 SLVKIETE-EFPGL--PEYQLKALNLRNCS--L--QALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLN 209 (428)
Q Consensus 137 ~~~~~~~~-~~~~~--~~~~L~~L~l~~~~--~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 209 (428)
|.+..... .+... ..++|++|++++|. + ..++.....+++|+.|++++|..... ...++..+++|+.|.+..
T Consensus 166 ~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSB
T ss_pred CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEccccc
Confidence 88643221 11111 23469999999986 3 33455556789999999999842222 334457899999999876
Q ss_pred Ccc-------CCcccCCCCCCCccEE-ecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCC-CccccCCCCCCEEECc
Q 042919 210 NSL-------SGNFQLPSSKHDLLRL-DISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRI-PSSMSEMKRLESLDLS 280 (428)
Q Consensus 210 ~~~-------~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~ 280 (428)
+.. .........+++|+.+ .+..... ..++ .+...+++|++|++++|.+.+.. ...+..+++|++|++.
T Consensus 245 ~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~-~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~ 322 (594)
T 2p1m_B 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLP-AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL 322 (594)
T ss_dssp CCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGG-GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHH-HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence 642 1122233567888888 3433222 1222 23334799999999999865322 2335689999999999
Q ss_pred CcccCCCCchhhhcCCCCCCEEeCCC---------cccccccc---cCCCCCcceeecccCccCccchhhhh-cCCCCcE
Q 042919 281 SNNFSGELPRQFLSGCFSLSFLSLSD---------NHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGLS-KATSLLE 347 (428)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~ 347 (428)
+| +.+.........+++|+.|++.+ +.+.+... ...+++|++|.+..+.+++.....+. .+++|+.
T Consensus 323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 88 43222233344689999999943 33433222 23589999999988888876666665 5899999
Q ss_pred EEcc--C----Cccccc-----CCcccCCCCCCcEEeCCCCcCCcCCCCcc--ccccCceEEccCCcCCccCCccc-ccC
Q 042919 348 LDLS--N----NMLYGQ-----IPPWFGNLSGLQFLDISENQLCGSVPSSF--NLSSLRRLYMHMNAFNGSIPGAL-RRS 413 (428)
Q Consensus 348 L~l~--~----~~i~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-~~~ 413 (428)
|+++ + +.+++. ++..+..+++|+.|++++ .+++.....+ .+++|+.|++++|.+++.....+ ..+
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 9999 3 455522 122366789999999987 6665555444 48999999999999875544444 679
Q ss_pred CCCCEEECCCCccC
Q 042919 414 LSLTVLDLRDNEFS 427 (428)
Q Consensus 414 ~~L~~L~l~~~~~~ 427 (428)
++|+.|++++|+++
T Consensus 481 ~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 481 DSLRKLEIRDCPFG 494 (594)
T ss_dssp TTCCEEEEESCSCC
T ss_pred CCcCEEECcCCCCc
Confidence 99999999999985
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4e-24 Score=202.42 Aligned_cols=244 Identities=21% Similarity=0.201 Sum_probs=206.9
Q ss_pred CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCc-ccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919 176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGN-FQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN 254 (428)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 254 (428)
..+.++..+..++ .+|..+ .++++.|++++|.+... ......+++|++|++++|.+....+..+. .+++|++|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN-GLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEE
T ss_pred CCcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc-CcccCCEEE
Confidence 3567777777766 344332 47899999999998875 34567899999999999999854444454 489999999
Q ss_pred ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc---ccCCCCCcceeecccCcc
Q 042919 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV---VFPNSTNLCWLYLNNNHF 331 (428)
Q Consensus 255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 331 (428)
+++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|...... .+..+++|++|++++|.+
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 9999998777777999999999999999987 677777889999999999985543322 378899999999999999
Q ss_pred CccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCccc
Q 042919 332 SGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGAL 410 (428)
Q Consensus 332 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~ 410 (428)
.+. ..+..+++|+.|++++|.+++..+..+.++++|+.|++++|++++..+..+ .+++|+.|++++|+++...+..+
T Consensus 209 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 209 KDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp SSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred ccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 854 357889999999999999998889999999999999999999998888878 89999999999999997777888
Q ss_pred ccCCCCCEEECCCCccC
Q 042919 411 RRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 411 ~~~~~L~~L~l~~~~~~ 427 (428)
..+++|+.|++++||+.
T Consensus 287 ~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSSCEE
T ss_pred ccccCCCEEEccCCCcC
Confidence 99999999999999874
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.6e-24 Score=191.79 Aligned_cols=230 Identities=20% Similarity=0.165 Sum_probs=129.6
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (428)
++.|+++++.+..+|..+..+++|+.|++++|.+. .++..+ ..+++|++|++++|.+...+.....+++|++|++++|
T Consensus 83 l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 83 RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred eeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 55555555555555555555666666666666555 333333 3455555555555544433222333334444444443
Q ss_pred ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc
Q 042919 234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV 313 (428)
Q Consensus 234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 313 (428)
...+.++..+.. . .....+..+++|++|++++|.+. .++.. +..+++|+.|++++|.+....
T Consensus 161 ~~~~~~p~~~~~-------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 161 PELTELPEPLAS-------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp TTCCCCCSCSEE-------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCCCC
T ss_pred CCccccChhHhh-------c---------cchhhhccCCCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCcCc
Confidence 333233322211 0 00011223555666666655554 44433 445556666666665555433
Q ss_pred c-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cccc
Q 042919 314 V-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSS 391 (428)
Q Consensus 314 ~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~ 391 (428)
. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.++++|+.|+|++|++.+..|..+ .+++
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 2 5556667777777766666666667777777777777777666777777777777777777777777777666 7777
Q ss_pred CceEEccCCcCC
Q 042919 392 LRRLYMHMNAFN 403 (428)
Q Consensus 392 L~~L~l~~~~~~ 403 (428)
|+.+++..+.+.
T Consensus 303 L~~l~l~~~~~~ 314 (328)
T 4fcg_A 303 NCIILVPPHLQA 314 (328)
T ss_dssp TCEEECCGGGSC
T ss_pred ceEEeCCHHHHH
Confidence 777777766554
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.8e-25 Score=197.21 Aligned_cols=248 Identities=22% Similarity=0.188 Sum_probs=160.7
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCC-CCchhhh------hcCCCCCEEEecCCccCCc-ccCC--CCCC
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQG-IFPSWLL------QNNTKLDTLYLLNNSLSGN-FQLP--SSKH 223 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~-~~~~--~~~~ 223 (428)
|+.+++++|.+ .+|..+... |+.|+++++.+.. ..+..+. ..+++|++|++++|.+.+. .... ..++
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 66666666666 666655544 7777777776632 2222221 1467777777777766542 2221 4556
Q ss_pred CccEEecCCCccccCCCchhhhc----CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCC
Q 042919 224 DLLRLDISHNKFSCQLPGNMGKI----LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSL 299 (428)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 299 (428)
+|++|++++|.+.+. +..+... +++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 192 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI-------- 192 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH--------
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH--------
Confidence 666666666666533 4444331 156666666666666555556666666666666666543221100
Q ss_pred CEEeCCCcccccccccCCCCCcceeecccCccCc---cchhhhhcCCCCcEEEccCCcccccCC-cccCCCCCCcEEeCC
Q 042919 300 SFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSG---KIQDGLSKATSLLELDLSNNMLYGQIP-PWFGNLSGLQFLDIS 375 (428)
Q Consensus 300 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~ 375 (428)
....+..+++|++|++++|.++. .....+..+++|+.|++++|.+++..| ..+..+++|+.|+++
T Consensus 193 -----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 193 -----------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp -----------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred -----------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 00112556677777777777663 223445678899999999999986654 456678899999999
Q ss_pred CCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 376 ENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+|+++ ..+..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++|
T Consensus 262 ~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 262 FTGLK-QVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCS-SCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCccC-hhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 99998 4444444 8999999999999855 66 8899999999999999986
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.2e-23 Score=180.46 Aligned_cols=198 Identities=25% Similarity=0.329 Sum_probs=118.0
Q ss_pred ccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeC
Q 042919 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 304 (428)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 304 (428)
.+.++++++.++ .+|..+ .+++++|++++|.+....+..+.++++|++|++++|.+. .++...+..+++|++|++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 445555555544 344332 245666666666665444445666666666666666655 454444555666666666
Q ss_pred CCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcC
Q 042919 305 SDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGS 382 (428)
Q Consensus 305 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~ 382 (428)
++|.+..... +..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 6666554432 45566666666666666655555566666666666666666644444566666666666666666655
Q ss_pred CCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 383 VPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 383 ~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
.+..+ .+++|+.|++++|++....+..+..+++|+.|++++||++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 55544 5666666666666666444555666666666666666654
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2.1e-22 Score=195.52 Aligned_cols=265 Identities=22% Similarity=0.242 Sum_probs=213.8
Q ss_pred CCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEE
Q 042919 78 THIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKAL 157 (428)
Q Consensus 78 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 157 (428)
.+++.|+++++.++ .+|..+. ++|++|++++|.+..+.. .+++|++|++++|.+...+. ..++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC-----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC-----CCCCCCEE
Confidence 46999999999988 5565443 899999999999987622 67999999999998764443 23469999
Q ss_pred EcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCcccc
Q 042919 158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSC 237 (428)
Q Consensus 158 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (428)
++++|.+..+|. .+++|+.|++++|.+.. ++. .+++|+.|++++|.+.... ..+++|+.|++++|.+.
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-lp~----~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~- 174 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-LPV----LPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT- 174 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-
T ss_pred ECcCCcCCCCCC---CCCCcCEEECCCCCCCc-CCC----CCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCC-
Confidence 999999999887 56799999999999885 332 3589999999999887643 35678999999999997
Q ss_pred CCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCC
Q 042919 238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN 317 (428)
Q Consensus 238 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 317 (428)
.++ ..+++|+.|++++|.+.. .+. ..++|++|++++|.+. .++. .+++|+.|++++|.+.... ..
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~lp--~~ 239 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP--VL 239 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC--CC
T ss_pred CCc----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCcCC--CC
Confidence 455 337899999999999885 332 3578999999999987 5553 3578999999999888644 56
Q ss_pred CCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 318 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
+++|+.|++++|.++.... .+++|+.|++++|.++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus 240 l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 7889999999998875333 5788999999999998 778888999999999999999887666544
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-25 Score=199.79 Aligned_cols=236 Identities=19% Similarity=0.144 Sum_probs=177.9
Q ss_pred CccEEEcCCCCCccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919 153 QLKALNLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS 231 (428)
Q Consensus 153 ~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 231 (428)
+|++|++++|.+..++ ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+.... ..++|+.|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence 4777777777776554 567778888888888888764443 467788888888888776533 33788888888
Q ss_pred CCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc
Q 042919 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 311 (428)
+|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+...+++|+.|++++|.+..
T Consensus 108 ~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 8887633221 257889999999888876677788888899999999888744444444567889999999988887
Q ss_pred ccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC-cCCCCcc-cc
Q 042919 312 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC-GSVPSSF-NL 389 (428)
Q Consensus 312 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~-~~ 389 (428)
......+++|++|++++|.+++..+ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+ .+
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred cccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 7666678889999999988875444 4778888999999999888 56777888889999999999887 4444444 77
Q ss_pred ccCceEEccCCc
Q 042919 390 SSLRRLYMHMNA 401 (428)
Q Consensus 390 ~~L~~L~l~~~~ 401 (428)
++|+.|++.++.
T Consensus 262 ~~L~~l~l~~~~ 273 (317)
T 3o53_A 262 QRVQTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccceEEECCCch
Confidence 888888888554
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3e-23 Score=183.33 Aligned_cols=204 Identities=24% Similarity=0.216 Sum_probs=150.5
Q ss_pred CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEE
Q 042919 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL 302 (428)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 302 (428)
+++++|+++++.+.+..+..+.. +++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhcc-ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence 35777777777766333333433 777888888888777655666777888888888888776 4444456677888888
Q ss_pred eCCCcccccccc--cCCCCCcceeecccCccCcc-chhhhhcCCCCcEEEccCCcccccCCcccCCCCCCc----EEeCC
Q 042919 303 SLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGK-IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQ----FLDIS 375 (428)
Q Consensus 303 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~----~L~L~ 375 (428)
++++|.+..... +..+++|++|++++|.+.+. .+..+..+++|++|++++|++++..+..+..+++|+ .|+++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 888887765544 67788888888888887753 367788888888888888888766666666666666 78888
Q ss_pred CCcCCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 376 ENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 376 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+|++++..+..+...+|+.|++++|.++...+..+..+++|+.|++++|+++|
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 88888776666655688888888888886666667888888888888888875
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4.6e-24 Score=192.23 Aligned_cols=243 Identities=22% Similarity=0.212 Sum_probs=177.6
Q ss_pred ccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCC
Q 042919 48 TGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHS 127 (428)
Q Consensus 48 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 127 (428)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.++ ...+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l------~~~~ 99 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVGP 99 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE------EECT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc------cCCC
Confidence 445567899999999999998888899999999999999998875443 88899999999999987754 2348
Q ss_pred CCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchh-HhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEE
Q 042919 128 KLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPS-ILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLY 206 (428)
Q Consensus 128 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 206 (428)
+|++|++++|.+....... . ++|++|++++|.+..++. .+..+++|+.|++++|.+....+..+...+++|++|+
T Consensus 100 ~L~~L~l~~n~l~~~~~~~--~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSR--G--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TCCEEECCSSCCSEEEECC--C--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CcCEEECCCCccCCcCccc--c--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 9999999988775443322 2 359999999999877754 6677889999999999888766666656788899999
Q ss_pred ecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCC
Q 042919 207 LLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSG 286 (428)
Q Consensus 207 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 286 (428)
+++|.+.... ....+++|++|++++|.+. .++..+.. +++|+.|++++|.+. ..+..+..+++|++|++++|++..
T Consensus 176 L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 176 LQYNFIYDVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTSCCCEEE-CCCCCTTCCEEECCSSCCC-EECGGGGG-GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred CCCCcCcccc-cccccccCCEEECCCCcCC-cchhhhcc-cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 9888877653 2234677777777777776 34444443 677777777777776 345566677777777777777652
Q ss_pred CCchhhhcCCCCCCEEeCCC
Q 042919 287 ELPRQFLSGCFSLSFLSLSD 306 (428)
Q Consensus 287 ~~~~~~~~~~~~L~~L~l~~ 306 (428)
......+..++.|+.+++.+
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred cCHHHHHhccccceEEECCC
Confidence 23333445555566555543
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.7e-22 Score=175.30 Aligned_cols=175 Identities=24% Similarity=0.221 Sum_probs=90.3
Q ss_pred CCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeec
Q 042919 248 PELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYL 326 (428)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l 326 (428)
++++.|++++|.+....+..+..+++|++|++++|.+. .++.. ..+++|+.|++++|.+..... +..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEEC
Confidence 34455555555444333444445555555555555443 22211 344455555555555443332 344555555555
Q ss_pred ccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCcc
Q 042919 327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGS 405 (428)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 405 (428)
++|.++...+..|..+++|+.|++++|+++...+..+..+++|+.|++++|+++...+..+ .+++|+.|++++|++. .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 5555554444555555556666665555554444445555556666666665554444444 4555666666666555 4
Q ss_pred CCcccccCCCCCEEECCCCcc
Q 042919 406 IPGALRRSLSLTVLDLRDNEF 426 (428)
Q Consensus 406 ~~~~~~~~~~L~~L~l~~~~~ 426 (428)
+|..+..+++|+.+++++||+
T Consensus 187 ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 187 IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCCCSEEECCSCCB
T ss_pred cChhhcccccCCeEEeCCCCc
Confidence 455555555566666665554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.7e-23 Score=196.89 Aligned_cols=233 Identities=20% Similarity=0.155 Sum_probs=175.1
Q ss_pred CccEEEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecC
Q 042919 153 QLKALNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDIS 231 (428)
Q Consensus 153 ~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 231 (428)
+|+.|++++|.+..+ |..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC----CCCCcCEEECc
Confidence 477777777777555 3567777788888888887765444 457788888888888776543 23778888888
Q ss_pred CCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc
Q 042919 232 HNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 311 (428)
+|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+...+++|+.|++++|.+..
T Consensus 108 ~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 8887633222 257889999999988877777888888999999999988755555544578899999999998887
Q ss_pred ccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC-cCCCCcc-cc
Q 042919 312 EVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC-GSVPSSF-NL 389 (428)
Q Consensus 312 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~-~~ 389 (428)
......+++|+.|++++|.+++..+. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..+..+ .+
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred ccccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 77677788899999999888865444 778888999999999888 46777888888999999998887 3333333 66
Q ss_pred ccCceEEcc
Q 042919 390 SSLRRLYMH 398 (428)
Q Consensus 390 ~~L~~L~l~ 398 (428)
+.|+.+++.
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 777777775
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=5.9e-23 Score=195.50 Aligned_cols=243 Identities=22% Similarity=0.219 Sum_probs=169.0
Q ss_pred ccchhHhhhCC----CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCC
Q 042919 165 QALPSILLQQL----DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP 240 (428)
Q Consensus 165 ~~l~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 240 (428)
..+|..+..+. +|+.|++++|.+....+..+ ..+++|+.|++++|.+.+..+ ...+++|++|++++|.+.+ ++
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~ 96 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL 96 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC
Confidence 45566665554 89999999999987665554 689999999999999876544 6778889999999888763 22
Q ss_pred chhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cC-C
Q 042919 241 GNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FP-N 317 (428)
Q Consensus 241 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~-~ 317 (428)
. .++|+.|++++|.+.+..+. .+++|++|++++|.+.+ .+...+..+++|+.|++++|.+....+ +. .
T Consensus 97 ----~-~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 97 ----V-GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp ----E-CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred ----C-CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 1 47888888888888754332 45778888888888773 333345667788888888877765433 32 5
Q ss_pred CCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEc
Q 042919 318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYM 397 (428)
Q Consensus 318 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l 397 (428)
+++|++|++++|.+++.. ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++.+.....+++|+.|++
T Consensus 168 l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 677777777777776542 23346777777777777774 344477777777777777777753333226677777777
Q ss_pred cCCcCC-ccCCcccccCCCCCEEECC
Q 042919 398 HMNAFN-GSIPGALRRSLSLTVLDLR 422 (428)
Q Consensus 398 ~~~~~~-~~~~~~~~~~~~L~~L~l~ 422 (428)
++|++. +..|..+..++.|+.++++
T Consensus 245 ~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 245 RGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777776 4455556666666655553
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.1e-20 Score=166.06 Aligned_cols=200 Identities=28% Similarity=0.324 Sum_probs=93.6
Q ss_pred CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCccc-CCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEE
Q 042919 176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLN 254 (428)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 254 (428)
+.+.++++++.++. ++..+ .++++.|+++++.+..... ....+++|++|+++++.+. .++...+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCc-cCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 35566666666552 33211 2445555555555544322 2334445555555555444 33333322244555555
Q ss_pred ccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCcc
Q 042919 255 LSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGK 334 (428)
Q Consensus 255 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 334 (428)
+++|.+....+..+..+++|++|++++|.+. .++...+ ..+++|++|++++|.+...
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~----------------------~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF----------------------DSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTT----------------------TTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHh----------------------CcCcCCCEEECCCCcCCcc
Confidence 5555444333344444455555555554444 2333333 4444555555555544444
Q ss_pred chhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919 335 IQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 335 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 403 (428)
....+..+++|+.|++++|.++...+..+..+++|+.|++++|++++..+..+ .+++|+.|++++|++.
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 44444445555555555555543333344445555555555555544433333 4455555555555543
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=7.3e-23 Score=186.31 Aligned_cols=252 Identities=17% Similarity=0.193 Sum_probs=174.2
Q ss_pred ccEEEcCCCCCccchhHhhhC--CCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCC--cccCCCCCCCccEEe
Q 042919 154 LKALNLRNCSLQALPSILLQQ--LDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSG--NFQLPSSKHDLLRLD 229 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~ 229 (428)
++.++++++.+. +..+..+ ++++.|++.++.+....+.. ..+++|+.|++++|.+.. .......+++|++|+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~--~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH--FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC--CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh--ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 778888887765 5566666 78899999988877655542 367888888888887653 333456778888888
Q ss_pred cCCCccccCCCchhhhcCCCCcEEEccCC-CCCCC-CCccccCCCCCCEEECcCc-ccCCCCchhhhcCCC-CCCEEeCC
Q 042919 230 ISHNKFSCQLPGNMGKILPELLSLNLSEN-GFEGR-IPSSMSEMKRLESLDLSSN-NFSGELPRQFLSGCF-SLSFLSLS 305 (428)
Q Consensus 230 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~ 305 (428)
+++|.+.+..+..+.. +++|++|++++| .+++. .+..+..+++|++|++++| .+.+......+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 8888776555555555 788888888888 55532 4455677888888888888 665332234456777 88888888
Q ss_pred Ccc--ccccc---ccCCCCCcceeecccCc-cCccchhhhhcCCCCcEEEccCCc-ccccCCcccCCCCCCcEEeCCCCc
Q 042919 306 DNH--LQGEV---VFPNSTNLCWLYLNNNH-FSGKIQDGLSKATSLLELDLSNNM-LYGQIPPWFGNLSGLQFLDISENQ 378 (428)
Q Consensus 306 ~~~--~~~~~---~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~~~ 378 (428)
+|. +.+.. .+..+++|++|++++|. +++..+..+.++++|++|++++|. ++......++++++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 884 33211 25567888888888887 666666777888888888888884 43333335777888888888888
Q ss_pred CCcCCCCccccccCceEEccCCcCCccCCccccc
Q 042919 379 LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 412 (428)
Q Consensus 379 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 412 (428)
+++..... -..+++.|++++|++++..|..++.
T Consensus 283 i~~~~~~~-l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 283 VPDGTLQL-LKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp SCTTCHHH-HHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred cCHHHHHH-HHhhCcceEEecccCccccCCcccc
Confidence 33222111 1234677778888888777766654
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.2e-23 Score=195.03 Aligned_cols=254 Identities=19% Similarity=0.214 Sum_probs=124.6
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhh---hhcCCCCCEEEecCCccCCccc-----------CC
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWL---LQNNTKLDTLYLLNNSLSGNFQ-----------LP 219 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-----------~~ 219 (428)
|+...+....+..++..+..+++|+.|++++|.+....+..+ +..+++|+.|++++|....... .+
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 444444444556778888889999999999998876544432 3456777788777764432110 01
Q ss_pred CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchh---hhcCC
Q 042919 220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQ---FLSGC 296 (428)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~ 296 (428)
..+++|++|++++|.+...... ..+..+..+++|++|++++|.+.+..+.. .+..+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l 149 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL 149 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH
Confidence 2344555555555544421100 12233344444444444444433111110 01111
Q ss_pred ---------CCCCEEeCCCccccccc------ccCCCCCcceeecccCccCcc-----chhhhhcCCCCcEEEccCCccc
Q 042919 297 ---------FSLSFLSLSDNHLQGEV------VFPNSTNLCWLYLNNNHFSGK-----IQDGLSKATSLLELDLSNNMLY 356 (428)
Q Consensus 297 ---------~~L~~L~l~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~ 356 (428)
++|++|++++|.+.... .+..+++|++|++++|.++.. .+..+..+++|+.|++++|.++
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 44555555555443211 133444555555555554421 1114445555555555555553
Q ss_pred ----ccCCcccCCCCCCcEEeCCCCcCCcCCC----Ccc---ccccCceEEccCCcCCc----cCCccc-ccCCCCCEEE
Q 042919 357 ----GQIPPWFGNLSGLQFLDISENQLCGSVP----SSF---NLSSLRRLYMHMNAFNG----SIPGAL-RRSLSLTVLD 420 (428)
Q Consensus 357 ----~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~---~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~ 420 (428)
..++..+..+++|+.|+|++|.+++... ..+ .+++|+.|++++|.+.. .+|..+ .++++|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 2344445555555555555555544311 111 14555555555555553 244444 3455555555
Q ss_pred CCCCccCC
Q 042919 421 LRDNEFSG 428 (428)
Q Consensus 421 l~~~~~~~ 428 (428)
+++|+++|
T Consensus 310 l~~N~l~~ 317 (386)
T 2ca6_A 310 LNGNRFSE 317 (386)
T ss_dssp CTTSBSCT
T ss_pred ccCCcCCc
Confidence 55555543
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=3.1e-21 Score=172.72 Aligned_cols=193 Identities=21% Similarity=0.308 Sum_probs=137.0
Q ss_pred hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 042919 197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276 (428)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 276 (428)
..+++|+.|+++++.+.... ....+++|++|++++|.+. .++. +. .+++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 35678888888888776543 4456778888888888776 3333 33 377888888888877643 35777788888
Q ss_pred EECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc
Q 042919 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY 356 (428)
Q Consensus 277 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 356 (428)
|++++|.+. .++. +..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 112 L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 888888776 3433 56777888888888877766667777788888888877765433 677778888888888776
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919 357 GQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN 403 (428)
Q Consensus 357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 403 (428)
+. +. +..+++|+.|++++|++++..+ ...+++|+.|++++|+++
T Consensus 187 ~~-~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DI-SP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CC-GG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred cC-hh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 43 22 6777778888888887775543 226777888888888776
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=8.1e-23 Score=183.63 Aligned_cols=249 Identities=20% Similarity=0.206 Sum_probs=127.9
Q ss_pred ccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccC-cchhhhhc-------cCCCCcEEeCCCCccCCccccc
Q 042919 50 ICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLT-GNLQSVIA-------NIKSLEYLSLDDNNFEGLFSFN 121 (428)
Q Consensus 50 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~ 121 (428)
++..++|++|+++++.+ ..|..+... |+.|+++++.+. ...+..+. ++++|++|++++|.+.+..+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34556677777777766 334433332 666666666553 12233332 4666777777776665443321
Q ss_pred cc-cCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhC-----CCccEEEccCCcCCCCCchhh
Q 042919 122 SL-KNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQ-----LDLRFIDLSHNKLQGIFPSWL 195 (428)
Q Consensus 122 ~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~ 195 (428)
.+ ..+++ |++|++++|.+..+|..+..+ ++|++|++++|.+....+..+
T Consensus 115 ~~~~~l~~-------------------------L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 115 LLEATGPD-------------------------LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp SSSCCSCC-------------------------CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred HHHhcCCC-------------------------ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 11 34444 555555555554445555544 677777777777765443333
Q ss_pred hhcCCCCCEEEecCCccCCc---cc--CCCCCCCccEEecCCCcccc--CCCchhhhcCCCCcEEEccCCCCCCCCC-cc
Q 042919 196 LQNNTKLDTLYLLNNSLSGN---FQ--LPSSKHDLLRLDISHNKFSC--QLPGNMGKILPELLSLNLSENGFEGRIP-SS 267 (428)
Q Consensus 196 ~~~~~~L~~L~l~~~~~~~~---~~--~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 267 (428)
..+++|++|++++|.+.+. .. ....+++|++|++++|.+.. ..+..++..+++|++|++++|.+.+..+ ..
T Consensus 170 -~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 -RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp -CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred -ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 4566666666666654321 11 11445555566665555541 1112222234556666666665554332 23
Q ss_pred ccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcE
Q 042919 268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 347 (428)
Q Consensus 268 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 347 (428)
+..+++|++|++++|.+. .++.... ++|++|++++|.+++. +. +..+++|++
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~-------------------------~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~ 300 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP-------------------------AKLSVLDLSYNRLDRN-PS-PDELPQVGN 300 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC-------------------------SEEEEEECCSSCCCSC-CC-TTTSCEEEE
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc-------------------------CCceEEECCCCCCCCC-hh-HhhCCCCCE
Confidence 334455555555555554 3333211 4555555555555433 22 455555666
Q ss_pred EEccCCccc
Q 042919 348 LDLSNNMLY 356 (428)
Q Consensus 348 L~l~~~~i~ 356 (428)
|++++|+++
T Consensus 301 L~L~~N~l~ 309 (312)
T 1wwl_A 301 LSLKGNPFL 309 (312)
T ss_dssp EECTTCTTT
T ss_pred EeccCCCCC
Confidence 666666554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=8.1e-21 Score=167.06 Aligned_cols=195 Identities=27% Similarity=0.343 Sum_probs=118.2
Q ss_pred CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 300 (428)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 300 (428)
.+++|+.|++.++.+. .++ .+.. +++|++|++++|.+.+. ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~-~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQ-GIQY-LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCcc-ccc-cccc-CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCC
Confidence 4556667777666654 222 2322 66677777777666532 35666667777777776665 44444455666666
Q ss_pred EEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCc
Q 042919 301 FLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378 (428)
Q Consensus 301 ~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~ 378 (428)
+|++++|.+..... +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666666665443 5566666666666666665555555666666666666666665555555666666666666666
Q ss_pred CCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 379 LCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 379 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+++..+..+ .+++|+.|++++|++. +.|+.|+.+++++|.++|
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCC
Confidence 665555544 5666666666666654 234455555555555544
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3.6e-21 Score=169.35 Aligned_cols=184 Identities=23% Similarity=0.288 Sum_probs=132.0
Q ss_pred CCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCE
Q 042919 222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSF 301 (428)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 301 (428)
+++|++|++++|.+.+ + ..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.
T Consensus 62 l~~L~~L~l~~n~l~~-~-~~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-I-SALKE-LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137 (272)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCC-c-hhhcC-CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCE
Confidence 4444444444444432 1 12222 667777777777776655556677777777777777766 455555666777777
Q ss_pred EeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919 302 LSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379 (428)
Q Consensus 302 L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~ 379 (428)
|++++|.+..... +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 7777777765544 56778888888888888877777778888999999999988877777788889999999999877
Q ss_pred CcCCCCccccccCceEEccCCcCCccCCcccccCCC
Q 042919 380 CGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLS 415 (428)
Q Consensus 380 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 415 (428)
.+ .+++|+.+++++|.+.+..|..++.++.
T Consensus 218 ~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 218 DC------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CC------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred cc------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 63 3667888889999888888887776654
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.1e-22 Score=183.29 Aligned_cols=239 Identities=19% Similarity=0.197 Sum_probs=138.4
Q ss_pred ccccChHHHHHHhcccceE-EEeecchhcccCCcceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcC--CCCCEEE
Q 042919 8 IIKKPQELWHKFFQKGSIT-YLSVEDSCRKTNGVPLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNL--THIKVLD 84 (428)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~l~~~~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~ 84 (428)
...+|++++..+|..-..+ .+.+...|+.|.++.. .-..++.++++++.+. +..+..+ ++++.|+
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~---------~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~ 76 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS---------DESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFR 76 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT---------CSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEE
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc---------CchhheeeccccccCC---HHHHHhhhhccceEEE
Confidence 4578999988887544333 2445567887776541 1135889999988766 4566666 8999999
Q ss_pred ccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCcccc-ccCCCCCCCcCCccEEEcCCC-
Q 042919 85 LSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKI-ETEEFPGLPEYQLKALNLRNC- 162 (428)
Q Consensus 85 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~- 162 (428)
++++.+.+..+. +..+++|++|++++|.+.+...+..+..+++|++|++++|.+.. ....+... ++|++|++++|
T Consensus 77 l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~L~~~~ 153 (336)
T 2ast_B 77 CPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN--SNLVRLNLSGCS 153 (336)
T ss_dssp CTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC--TTCSEEECTTCB
T ss_pred cCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC--CCCCEEECCCCC
Confidence 999988755444 56789999999999987654334567777887777777765431 12222222 23555555555
Q ss_pred CCc--cchhHhhhCCCccEEEccCC-cCCCCCchhhhhcCC-CCCEEEecCCccCCcccCCCCCCCccEEecCCCccc-c
Q 042919 163 SLQ--ALPSILLQQLDLRFIDLSHN-KLQGIFPSWLLQNNT-KLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFS-C 237 (428)
Q Consensus 163 ~~~--~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~ 237 (428)
.+. .++..+..+++|+.|++++| .+++......+..++ +|++|++++|.. .++ .
T Consensus 154 ~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~---------------------~~~~~ 212 (336)
T 2ast_B 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------------------NLQKS 212 (336)
T ss_dssp SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG---------------------GSCHH
T ss_pred CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc---------------------cCCHH
Confidence 343 24444555555555555555 444322222223344 444444443321 121 1
Q ss_pred CCCchhhhcCCCCcEEEccCCC-CCCCCCccccCCCCCCEEECcCcc
Q 042919 238 QLPGNMGKILPELLSLNLSENG-FEGRIPSSMSEMKRLESLDLSSNN 283 (428)
Q Consensus 238 ~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~ 283 (428)
.++..+ ..+++|++|++++|. +++..+..+.++++|++|++++|.
T Consensus 213 ~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 213 DLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHH-HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHH-hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 122222 225666666666665 444444555566666666666653
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.5e-22 Score=184.34 Aligned_cols=248 Identities=19% Similarity=0.170 Sum_probs=124.5
Q ss_pred EEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchh---hhhcCC-CCCEEEecCCccCCcc-cCCC----C-CCCc
Q 042919 157 LNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSW---LLQNNT-KLDTLYLLNNSLSGNF-QLPS----S-KHDL 225 (428)
Q Consensus 157 L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~-~~~~----~-~~~L 225 (428)
+.++.+++... |..+...++|+.|++++|.+.+..+.. .+..++ +|++|++++|.+.... .... . .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666777544 444444445888888888887665522 224555 7777777777665421 1111 1 2566
Q ss_pred cEEecCCCccccCCCchhhhc---C-CCCcEEEccCCCCCCCCCccc----cC-CCCCCEEECcCcccCCCCchh---hh
Q 042919 226 LRLDISHNKFSCQLPGNMGKI---L-PELLSLNLSENGFEGRIPSSM----SE-MKRLESLDLSSNNFSGELPRQ---FL 293 (428)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~~~~---~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~~~~---~~ 293 (428)
++|++++|.+++..+..++.. + ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+..... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 677776666654443333221 2 566666666666654433322 22 246666666666655322211 11
Q ss_pred cCCC-CCCEEeCCCcccccccc------cCCC-CCcceeecccCccCccc----hhhhhc-CCCCcEEEccCCcccccCC
Q 042919 294 SGCF-SLSFLSLSDNHLQGEVV------FPNS-TNLCWLYLNNNHFSGKI----QDGLSK-ATSLLELDLSNNMLYGQIP 360 (428)
Q Consensus 294 ~~~~-~L~~L~l~~~~~~~~~~------~~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~i~~~~~ 360 (428)
...+ +|++|++++|.+.+... +..+ ++|++|++++|.+++.. +..+.. .++|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 2232 56666666665544332 2233 35555555555554422 222222 2355555555555543322
Q ss_pred ----cccCCCCCCcEEeCCCCcCCcCCCC-------cc-ccccCceEEccCCcCCc
Q 042919 361 ----PWFGNLSGLQFLDISENQLCGSVPS-------SF-NLSSLRRLYMHMNAFNG 404 (428)
Q Consensus 361 ----~~~~~~~~L~~L~L~~~~~~~~~~~-------~~-~~~~L~~L~l~~~~~~~ 404 (428)
..+..+++|+.|++++|.+.+.... .+ .+++|+.|++++|++..
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2234445555555555553222211 11 34455555555555543
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2.8e-20 Score=161.65 Aligned_cols=176 Identities=24% Similarity=0.339 Sum_probs=115.8
Q ss_pred CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEE
Q 042919 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFL 302 (428)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 302 (428)
...+.++++++.+. .+|..+ .++++.|++++|.+....+..+.++++|++|++++|.+. .++...+..+++|+.|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence 34667777777776 555544 357788888888877666667777888888888887776 4444445667777777
Q ss_pred eCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919 303 SLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380 (428)
Q Consensus 303 ~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 380 (428)
++++|.+..... +..+++|++|++++|.++...+..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|+++
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 777776665442 556666666666666666555555566666666666666666444445666666666666666666
Q ss_pred cCCCCcc-ccccCceEEccCCcCC
Q 042919 381 GSVPSSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 381 ~~~~~~~-~~~~L~~L~l~~~~~~ 403 (428)
+..+..+ .+++|+.|++++|++.
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCHHHHhCCCCCCEEEeeCCcee
Confidence 5555444 5666666666666665
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=5.4e-21 Score=171.65 Aligned_cols=229 Identities=21% Similarity=0.192 Sum_probs=139.4
Q ss_pred CccEEEccCCcCCCCCchhhh--hcCCCCCEEEecCCccCCcccC-C--CCCCCccEEecCCCccccCCC----chhhhc
Q 042919 176 DLRFIDLSHNKLQGIFPSWLL--QNNTKLDTLYLLNNSLSGNFQL-P--SSKHDLLRLDISHNKFSCQLP----GNMGKI 246 (428)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~-~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~ 246 (428)
.++.+.+.++.+.+.....+. ..+++|++|++++|.+.+.... . ..+++|++|++++|.+.+..+ ..+. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 456666666555422111111 1345577777777766543222 1 445555555555555543222 1111 2
Q ss_pred CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 326 (428)
Q Consensus 247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 326 (428)
+++|++|++++|.+....+..+..+++|++|++++|++.+... +.....+..+++|++|++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------------~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-------------------LMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-------------------HHTTSCTTSSCCCCSCBC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-------------------hhHHHhhhcCCCCCEEEC
Confidence 4445555555555444444444444444444444444321100 000111356778888888
Q ss_pred ccCccCccchh---hhhcCCCCcEEEccCCcccccCCcccCCC---CCCcEEeCCCCcCCcCCCCccccccCceEEccCC
Q 042919 327 NNNHFSGKIQD---GLSKATSLLELDLSNNMLYGQIPPWFGNL---SGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMN 400 (428)
Q Consensus 327 ~~~~~~~~~~~---~l~~~~~L~~L~l~~~~i~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 400 (428)
++|.++..... .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++. .+..+ +++|+.|++++|
T Consensus 205 s~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-~~~L~~L~Ls~N 282 (310)
T 4glp_A 205 RNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL-PAKLRVLDLSSN 282 (310)
T ss_dssp CSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCC-CSCCSCEECCSC
T ss_pred CCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhh-cCCCCEEECCCC
Confidence 88888633221 35678999999999999987767777776 699999999999984 44443 389999999999
Q ss_pred cCCccCCcccccCCCCCEEECCCCccCC
Q 042919 401 AFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 401 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
++++. |. +..+++|+.|++++|+|+.
T Consensus 283 ~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 RLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 99843 44 6788999999999999873
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.8e-20 Score=165.39 Aligned_cols=219 Identities=20% Similarity=0.162 Sum_probs=114.8
Q ss_pred EEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCccc-CCCCCCCccEEecCCCcc
Q 042919 157 LNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ-LPSSKHDLLRLDISHNKF 235 (428)
Q Consensus 157 L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 235 (428)
++..+.++..+|..+. ++|+.|++++|.+....+.. +..+++|++|++++|.+..... ....+++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTT-TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhH-hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3444445566665432 47899999998887554433 3567788888888877665332 344566666666666666
Q ss_pred ccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-
Q 042919 236 SCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV- 314 (428)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 314 (428)
....+..+.. +++|++|++++|.+....+..+..+++|++|++++|.+.+......+..+++|+.|++++|.+.....
T Consensus 89 ~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTT-CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcC-CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 5333333333 56666666666666554444566666666666666665421112224455555555555555443221
Q ss_pred -cCCCCCcc----eeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919 315 -FPNSTNLC----WLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380 (428)
Q Consensus 315 -~~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 380 (428)
+..+++|+ +|++++|.+.+..+..+. ..+|+.|++++|.+++..+..+.++++|+.|++++|++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 22222222 444444444433222222 224444444444444333333444444444444444444
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.1e-20 Score=162.90 Aligned_cols=197 Identities=15% Similarity=0.148 Sum_probs=152.6
Q ss_pred CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCC-CCCCCCccccCCCCCCEEECcC-cccCCCCchhhhcCCCCCC
Q 042919 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG-FEGRIPSSMSEMKRLESLDLSS-NNFSGELPRQFLSGCFSLS 300 (428)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~ 300 (428)
++++.|+++++.+. .++...+..+++|++|++++|. +....+..+..+++|++|++++ |.+. .++...+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence 36777777777776 3333333337888888888886 7655666788888888888887 7776 56656677888889
Q ss_pred EEeCCCcccccccccCCCCCcc---eeecccC-ccCccchhhhhcCCCCc-EEEccCCcccccCCcccCCCCCCcEEeCC
Q 042919 301 FLSLSDNHLQGEVVFPNSTNLC---WLYLNNN-HFSGKIQDGLSKATSLL-ELDLSNNMLYGQIPPWFGNLSGLQFLDIS 375 (428)
Q Consensus 301 ~L~l~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~L~L~ 375 (428)
.|++++|.+.....+..+++|+ +|++++| .++...+..|..+++|+ .|++++|+++...+..+.. ++|+.|+++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 9988888887766677788887 9999999 88877777788999999 9999999998444444555 899999999
Q ss_pred CCc-CCcCCCCcc-cc-ccCceEEccCCcCCccCCcccccCCCCCEEECCCCc
Q 042919 376 ENQ-LCGSVPSSF-NL-SSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE 425 (428)
Q Consensus 376 ~~~-~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 425 (428)
+|+ +++..+..+ .+ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 995 887767766 67 89999999999998 44543 67889999998874
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=1.1e-19 Score=161.09 Aligned_cols=199 Identities=25% Similarity=0.216 Sum_probs=124.3
Q ss_pred hhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcc-cCCCCCCCccEEecCCCccccCCCchhhhcCCCC
Q 042919 172 LQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNF-QLPSSKHDLLRLDISHNKFSCQLPGNMGKILPEL 250 (428)
Q Consensus 172 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 250 (428)
..++++++++++++.++. ++..+ .+.++.|++++|.+.... .....+++|+.|++++|.+... +.. ..+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~--~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD--GTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC--SCCTTC
T ss_pred cccCCccEEECCCCCCCc-CCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC--CCCCcC
Confidence 445677777777777663 33322 256777777777765532 2345666777777777766532 221 236667
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN 328 (428)
Q Consensus 251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~ 328 (428)
++|++++|.+. ..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+..... +..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 77777777666 44555666677777777777665 4444445666677777777766665443 55666677777776
Q ss_pred CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380 (428)
Q Consensus 329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 380 (428)
|.++......|..+++|+.|++++|.++ .+|..+...+.|+.|++++|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6666555555666666777777766666 55555666666667777666654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.7e-21 Score=180.65 Aligned_cols=152 Identities=23% Similarity=0.283 Sum_probs=99.6
Q ss_pred CCCcEEEccCCCCCCC-CC---ccccCCCCCCEEECcCcccCCC----CchhhhcCCCCCCEEeCCCcccccc----c--
Q 042919 248 PELLSLNLSENGFEGR-IP---SSMSEMKRLESLDLSSNNFSGE----LPRQFLSGCFSLSFLSLSDNHLQGE----V-- 313 (428)
Q Consensus 248 ~~L~~L~l~~~~~~~~-~~---~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~-- 313 (428)
++|++|++++|.+... .+ ..+..+++|++|++++|.+... +....+..+++|+.|++++|.+... .
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 7899999999888632 22 3566788888888888877522 1111455678888888888877521 1
Q ss_pred ccCCCCCcceeecccCccCcc----chhhhhc--CCCCcEEEccCCcccc----cCCccc-CCCCCCcEEeCCCCcCCcC
Q 042919 314 VFPNSTNLCWLYLNNNHFSGK----IQDGLSK--ATSLLELDLSNNMLYG----QIPPWF-GNLSGLQFLDISENQLCGS 382 (428)
Q Consensus 314 ~~~~~~~L~~L~l~~~~~~~~----~~~~l~~--~~~L~~L~l~~~~i~~----~~~~~~-~~~~~L~~L~L~~~~~~~~ 382 (428)
.+..+++|++|++++|.+++. .+..+.. +++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 266777788888888877654 2334432 7778888888887775 255555 4567788888888877755
Q ss_pred CC--Ccc--ccccCceEEccC
Q 042919 383 VP--SSF--NLSSLRRLYMHM 399 (428)
Q Consensus 383 ~~--~~~--~~~~L~~L~l~~ 399 (428)
.+ ..+ .++.++.+++..
T Consensus 319 ~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 319 DDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp SHHHHHHHHHHHHHTCCEECC
T ss_pred hhHHHHHHHHhhhcCcchhhh
Confidence 53 222 455555555543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=3.2e-19 Score=154.95 Aligned_cols=179 Identities=25% Similarity=0.231 Sum_probs=149.3
Q ss_pred CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919 200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279 (428)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 279 (428)
...+.++++++.+...+... .++++.|+++++.+.+..+..+.. +++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRG-LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcC-cccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888877654333 368999999999988544444444 899999999999998877778899999999999
Q ss_pred cCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc
Q 042919 280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 357 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 357 (428)
++|.+. .++...+..+++|+.|++++|.+..... +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 999987 6666667889999999999999886655 6789999999999999987777788899999999999999987
Q ss_pred cCCcccCCCCCCcEEeCCCCcCCcC
Q 042919 358 QIPPWFGNLSGLQFLDISENQLCGS 382 (428)
Q Consensus 358 ~~~~~~~~~~~L~~L~L~~~~~~~~ 382 (428)
..+..+..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777889999999999999998765
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=167.44 Aligned_cols=223 Identities=23% Similarity=0.258 Sum_probs=142.0
Q ss_pred CccEEEcCCCCCcc--chh--HhhhCCCccEEEccCCcCCCCCchhhh-hcCCCCCEEEecCCccCCccc-----CCCCC
Q 042919 153 QLKALNLRNCSLQA--LPS--ILLQQLDLRFIDLSHNKLQGIFPSWLL-QNNTKLDTLYLLNNSLSGNFQ-----LPSSK 222 (428)
Q Consensus 153 ~L~~L~l~~~~~~~--l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~-----~~~~~ 222 (428)
.++.+.+.++.+.. +.. ....+++|++|++++|.+....+..++ ..+++|++|++++|.+..... ....+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 47888888887632 211 123446799999999998877776654 678999999999999876322 12368
Q ss_pred CCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCC----CCccccCCCCCCEEECcCcccCCCCchh---hhcC
Q 042919 223 HDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGR----IPSSMSEMKRLESLDLSSNNFSGELPRQ---FLSG 295 (428)
Q Consensus 223 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~ 295 (428)
++|++|++++|.+....+..+.. +++|++|++++|.+.+. ....+..+++|++|++++|.+. .++.. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 89999999999997544444444 89999999999987531 1233467889999999999875 33322 3445
Q ss_pred CCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcC---CCCcEEEccCCcccccCCcccCCCCCCcEE
Q 042919 296 CFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKA---TSLLELDLSNNMLYGQIPPWFGNLSGLQFL 372 (428)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 372 (428)
+++|++|++++|.+... .+..+..+ ++|++|++++|+++ .+|..+. ++|+.|
T Consensus 223 l~~L~~L~Ls~N~l~~~----------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRAT----------------------VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp TCCCSSEECTTSCCCCC----------------------CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred CCCCCEEECCCCCCCcc----------------------chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 66666666666665543 22222222 34555555555554 3343332 455555
Q ss_pred eCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919 373 DISENQLCGSVPSSFNLSSLRRLYMHMNAFN 403 (428)
Q Consensus 373 ~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 403 (428)
++++|++++.. ....+++|+.|++++|+++
T Consensus 278 ~Ls~N~l~~~~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 278 DLSSNRLNRAP-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ECCSCCCCSCC-CTTSCCCCSCEECSSTTTS
T ss_pred ECCCCcCCCCc-hhhhCCCccEEECcCCCCC
Confidence 55555555331 1124455555555555554
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.6e-19 Score=161.57 Aligned_cols=210 Identities=17% Similarity=0.217 Sum_probs=171.5
Q ss_pred EcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCcccc
Q 042919 158 NLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSC 237 (428)
Q Consensus 158 ~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 237 (428)
.+..+.+..+. ....+++|+.|+++++.+... + . +..+++|+.|++++|.+..... ...+++|++|++++|.+.+
T Consensus 25 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-~-~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV-TQADLDGITTLSAFGTGVTTI-E-G-VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEE-CHHHHHTCCEEECTTSCCCCC-T-T-GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCcee-cHHHcCCcCEEEeeCCCccCc-h-h-hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 34444444432 234577999999999998754 3 2 4689999999999999987665 7789999999999999873
Q ss_pred CCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCC
Q 042919 238 QLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPN 317 (428)
Q Consensus 238 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 317 (428)
++ .+.. +++|++|++++|.+.+. + .+..+++|++|++++|.+. .++. +..+++|+.|++++|.+.+...+..
T Consensus 100 -~~-~~~~-l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~l~~ 171 (308)
T 1h6u_A 100 -VS-AIAG-LQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTPLAN 171 (308)
T ss_dssp -CG-GGTT-CTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGGGTT
T ss_pred -ch-hhcC-CCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChhhcC
Confidence 33 3444 89999999999999854 3 4889999999999999987 4443 6789999999999999998777999
Q ss_pred CCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919 318 STNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP 384 (428)
Q Consensus 318 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 384 (428)
+++|++|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|++++...
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 9999999999999986543 788999999999999998544 38999999999999999975433
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=3.3e-20 Score=170.24 Aligned_cols=59 Identities=24% Similarity=0.146 Sum_probs=39.1
Q ss_pred EeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchh----hhhccCC-CCcEEeCCCCccCCc
Q 042919 59 LDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQ----SVIANIK-SLEYLSLDDNNFEGL 117 (428)
Q Consensus 59 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~ 117 (428)
..++.+.+++..|..+...++|++|++++|.+....+ .++..++ +|++|++++|.+.+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 66 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK 66 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH
Confidence 4566667766666665555667777777777665444 5666666 677777777766554
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=6.8e-20 Score=158.04 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=155.3
Q ss_pred CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcc-cCCCCchhhhcCCCCCCEEeCCC-ccccccc--ccCCCCCcc
Q 042919 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN-FSGELPRQFLSGCFSLSFLSLSD-NHLQGEV--VFPNSTNLC 322 (428)
Q Consensus 247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~--~~~~~~~L~ 322 (428)
.+++++|++++|.+....+..+..+++|++|++++|. +. .++...+..+++|+.|++++ |.+.... .+..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 4689999999999987777789999999999999997 65 67766788999999999998 8887655 377899999
Q ss_pred eeecccCccCccchhhhhcCCCCc---EEEccCC-cccccCCcccCCCCCCc-EEeCCCCcCCcCCCCccccccCceEEc
Q 042919 323 WLYLNNNHFSGKIQDGLSKATSLL---ELDLSNN-MLYGQIPPWFGNLSGLQ-FLDISENQLCGSVPSSFNLSSLRRLYM 397 (428)
Q Consensus 323 ~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~i~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~~~~~L~~L~l 397 (428)
+|++++|.+++. +. +..+++|+ .|++++| .++...+..+.++++|+ .|++++|+++......+..++|+.|++
T Consensus 109 ~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred EEeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 999999998863 33 78888888 9999999 99877777899999999 999999999866666665589999999
Q ss_pred cCCc-CCccCCcccccC-CCCCEEECCCCccCC
Q 042919 398 HMNA-FNGSIPGALRRS-LSLTVLDLRDNEFSG 428 (428)
Q Consensus 398 ~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 428 (428)
++|+ +....+..|..+ ++|+.|++++|++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 9995 886777889999 999999999999874
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=6.5e-19 Score=148.43 Aligned_cols=179 Identities=23% Similarity=0.285 Sum_probs=140.5
Q ss_pred cEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCC
Q 042919 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLS 305 (428)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 305 (428)
+.++.+++.+. .++..+ .+++++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45555555554 444433 457888888888887666666778888888888888877 5666666778888888888
Q ss_pred Ccccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919 306 DNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383 (428)
Q Consensus 306 ~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 383 (428)
+|.+..... +..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 888776554 6788899999999998887777778889999999999999986666678889999999999997653
Q ss_pred CCccccccCceEEccCCcCCccCCcccccCCC
Q 042919 384 PSSFNLSSLRRLYMHMNAFNGSIPGALRRSLS 415 (428)
Q Consensus 384 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 415 (428)
.+++|+.|+++.|.+++.+|..++.++.
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4678999999999999889988887754
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.1e-18 Score=154.80 Aligned_cols=171 Identities=24% Similarity=0.287 Sum_probs=125.0
Q ss_pred CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 300 (428)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 300 (428)
.+++|+.|+++++.+. .++ .+.. +++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~-~~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred hcCcccEEEccCCCcc-cCh-hHhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence 5677888888888776 333 2333 7888888888888775433 778888888888888776 3333 66778888
Q ss_pred EEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919 301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380 (428)
Q Consensus 301 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 380 (428)
.|++++|.+.....+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 116 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 8888888877766677788888888888877754 567778888888888888874433 777888888888888877
Q ss_pred cCCCCccccccCceEEccCCcCCc
Q 042919 381 GSVPSSFNLSSLRRLYMHMNAFNG 404 (428)
Q Consensus 381 ~~~~~~~~~~~L~~L~l~~~~~~~ 404 (428)
+. +....+++|+.|++++|++..
T Consensus 192 ~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred CC-hhhccCCCCCEEECcCCcccC
Confidence 54 222267888888888887763
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=7.7e-19 Score=146.51 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=109.0
Q ss_pred cCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEE
Q 042919 269 SEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLEL 348 (428)
Q Consensus 269 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 348 (428)
..+++|++|++++|.+. .++ .+..+++|+.|++++|.+.....+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 45566666777666665 444 245666777777777766655566777788888888887776666677788888888
Q ss_pred EccCCcccccCCcccCCCCCCcEEeCCCCc-CCcCCCCccccccCceEEccCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 349 DLSNNMLYGQIPPWFGNLSGLQFLDISENQ-LCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 349 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
++++|.+++..+..++.+++|+.|++++|+ +++ .+....+++|+.|++++|++.. .+ .+..+++|+.|++++|+|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 888888876667778888888888888887 553 3332277888888888888874 33 6778888888888888876
Q ss_pred C
Q 042919 428 G 428 (428)
Q Consensus 428 ~ 428 (428)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=5.9e-18 Score=143.52 Aligned_cols=150 Identities=22% Similarity=0.284 Sum_probs=75.1
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN 328 (428)
Q Consensus 251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~ 328 (428)
+.++++++.++. +|..+ .+.+++|++++|.+.+..+...+..+++|+.|++++|.+..... +..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 466666666653 34333 23456666666665532233334455555555555555543332 44455555555555
Q ss_pred CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 403 (428)
|.++...+..|..+++|++|++++|.+++..|..+..+++|+.|+|++|++++..+..+ .+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 55544444444455555555555555544444445555555555555555544444444 4445555555555443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=4.8e-18 Score=143.09 Aligned_cols=167 Identities=28% Similarity=0.353 Sum_probs=136.6
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN 328 (428)
Q Consensus 251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~ 328 (428)
+.++..++.++. .|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+..... +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 566777777663 34333 468999999999987 6666667889999999999999886654 67889999999999
Q ss_pred CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCC
Q 042919 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIP 407 (428)
Q Consensus 329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~ 407 (428)
|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+ .+++|+.|++++|++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 99987777778889999999999999986666678899999999999999987776666 7899999999999876
Q ss_pred cccccCCCCCEEECCCCccCC
Q 042919 408 GALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 408 ~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+.++.|+.|++++|.++|
T Consensus 162 ---~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTT
T ss_pred ---cCCCCHHHHHHHHHhCCc
Confidence 456788888888887776
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=9.2e-18 Score=148.80 Aligned_cols=189 Identities=23% Similarity=0.242 Sum_probs=151.4
Q ss_pred EEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCC
Q 042919 180 IDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG 259 (428)
Q Consensus 180 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 259 (428)
+.+....+.+... ...+++|+.|++++|.+.... ....+++|+.|++++|.+.+ ++. +. .+++|+.|++++|.
T Consensus 29 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~-~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LA-NLKNLGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSEEC---HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSC
T ss_pred HHhcCCCcccccc---hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC-Ccc-cc-cCCCCCEEECCCCc
Confidence 3455555554332 246788999999999887653 35678999999999999874 333 44 48999999999999
Q ss_pred CCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhh
Q 042919 260 FEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGL 339 (428)
Q Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 339 (428)
+.+ ...+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+ +
T Consensus 102 l~~--~~~l~~l~~L~~L~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 102 VKD--LSSLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CCC--GGGGTTCTTCCEEECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--ChhhccCCCCCEEECCCCcCC-CCh--hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh--h
Confidence 875 344889999999999999987 343 367899999999999999888778899999999999999986544 8
Q ss_pred hcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919 340 SKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP 384 (428)
Q Consensus 340 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 384 (428)
..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++....
T Consensus 175 ~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 889999999999999984 44 48899999999999999876444
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.1e-17 Score=162.31 Aligned_cols=171 Identities=24% Similarity=0.284 Sum_probs=122.2
Q ss_pred CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 300 (428)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 300 (428)
.+++|+.|+++++.+. .++ .+.. +++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++ .+..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCC-CCT-TGGG-CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT--TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCC-CCh-HHcc-CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh--hhccCCCCC
Confidence 4567777888887775 333 2333 7788888888887775433 777888888888888776 343 356777888
Q ss_pred EEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919 301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380 (428)
Q Consensus 301 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 380 (428)
.|++++|.+.....+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 113 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 113 SLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEEecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 8888888777766677778888888888877754 567777888888888887774444 777788888888888777
Q ss_pred cCCCCccccccCceEEccCCcCCc
Q 042919 381 GSVPSSFNLSSLRRLYMHMNAFNG 404 (428)
Q Consensus 381 ~~~~~~~~~~~L~~L~l~~~~~~~ 404 (428)
+. +....+++|+.|+|++|++..
T Consensus 189 ~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 189 DL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp BC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CC-hHHccCCCCCEEEccCCcCcC
Confidence 54 322267788888888887763
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=3.7e-17 Score=156.91 Aligned_cols=187 Identities=23% Similarity=0.298 Sum_probs=116.6
Q ss_pred CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919 200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279 (428)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 279 (428)
.+++.|+++++.+.+.+... +++|+.|++++|.+. .++ ..+++|+.|++++|.++. +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 37888888888877643322 367888888888776 555 226778888888877775 444 443 7778888
Q ss_pred cCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC
Q 042919 280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI 359 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 359 (428)
++|.+.+ ++. .+++|+.|++++|.+..... .+++|++|++++|.+++. +. +. ++|+.|++++|.++ .+
T Consensus 128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCC-ch
Confidence 7777763 444 46677777777777665333 456677777777766642 22 33 66777777777666 44
Q ss_pred CcccCCCCCC-------cEEeCCCCcCCcCCCCccccccCceEEccCCcCCccCCccccc
Q 042919 360 PPWFGNLSGL-------QFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFNGSIPGALRR 412 (428)
Q Consensus 360 ~~~~~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 412 (428)
|. +.. +| +.|+|++|+++..+.....+++|+.|++++|++++..|..++.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 44 433 45 6666666666643332335666666666666666555555544
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.7e-17 Score=139.50 Aligned_cols=148 Identities=21% Similarity=0.285 Sum_probs=74.8
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeeccc
Q 042919 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNN 328 (428)
Q Consensus 251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~ 328 (428)
+.+++.++.++ .+|..+. +++++|++++|.+. .++...+..+++|+.|++++|.+.... .+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45566666555 2333332 45666666666655 344334455555555555555554332 244555555555555
Q ss_pred CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcC
Q 042919 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAF 402 (428)
Q Consensus 329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 402 (428)
|.++......|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+ .+++|+.|++++|++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55544444444445555555555555554444445555555555555555544444333 444555555555544
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=3.3e-17 Score=159.01 Aligned_cols=195 Identities=22% Similarity=0.203 Sum_probs=158.8
Q ss_pred ccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEcc
Q 042919 177 LRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLS 256 (428)
Q Consensus 177 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 256 (428)
+..+.+..+.+.+... ...+++|+.|.+++|.+.... ....+++|+.|++++|.+.+. +. +. .+++|+.|+++
T Consensus 23 l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~-~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KP-LT-NLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCC-GG-GG-GCTTCCEEECC
T ss_pred HHHHhccCCCcccccc---hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCC-hh-hc-cCCCCCEEECc
Confidence 3444555555554433 356789999999999887653 456789999999999998743 33 44 48999999999
Q ss_pred CCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccch
Q 042919 257 ENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQ 336 (428)
Q Consensus 257 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 336 (428)
+|.+... ..+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+.....+..+++|+.|+|++|.+.+..+
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCC-CCc--cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh
Confidence 9999753 36889999999999999987 443 367899999999999999988779999999999999999986655
Q ss_pred hhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 337 DGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 337 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++......
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccc
Confidence 88999999999999999853 468999999999999999886554443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=8.3e-17 Score=137.43 Aligned_cols=149 Identities=24% Similarity=0.302 Sum_probs=99.8
Q ss_pred CcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecc
Q 042919 250 LLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLN 327 (428)
Q Consensus 250 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~ 327 (428)
-+.++.+++.+. ..|..+ .++|++|++++|.+. .+....+..+++|+.|++++|.+..... +..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777777666 344433 367888888888776 3444446667777777777777765443 5667777777777
Q ss_pred cCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919 328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 328 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 403 (428)
+|.++...+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+ .+++|+.|++++|++.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 77776655556666777777777777776 556666677777777777777765555545 5667777777777765
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=1.3e-16 Score=145.41 Aligned_cols=199 Identities=19% Similarity=0.128 Sum_probs=103.1
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCccc--CCCCCCCccE-Eec
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQ--LPSSKHDLLR-LDI 230 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~-L~l 230 (428)
-++++.++++++++|..+ .+++++|++++|.++. ++...+..+++|++|++++|.+..... ....++++.+ +.+
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 356777778888888755 3478889998888873 444444677888888888877643211 2234444443 333
Q ss_pred CCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCC-CCCCEEeCCCccc
Q 042919 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGC-FSLSFLSLSDNHL 309 (428)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 309 (428)
..+.+. .++...+..+++|++|++++|.+....+..+.....+..+++.++.-...++...+..+ ..++.|++++|.+
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 344444 23222223355566666666555544333344444455555544321113333333333 2455555555555
Q ss_pred ccccc-cCCCCCcceeeccc-CccCccchhhhhcCCCCcEEEccCCccc
Q 042919 310 QGEVV-FPNSTNLCWLYLNN-NHFSGKIQDGLSKATSLLELDLSNNMLY 356 (428)
Q Consensus 310 ~~~~~-~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 356 (428)
..... .....+|+++++.+ +.++.....+|..+++|+.|++++|+++
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 43322 22334455555543 3333333344455555555555555555
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.4e-16 Score=145.20 Aligned_cols=238 Identities=18% Similarity=0.222 Sum_probs=102.7
Q ss_pred EEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEE-ccC
Q 042919 58 ELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFK-LSN 136 (428)
Q Consensus 58 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~-l~~ 136 (428)
+++-++++++ .+|..+ .+++++|++++++++...+.+|.++++|++|++++|++.+..+...+.+++++..+. +..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4444444444 223322 235556666666555333345555666666666665554443334445555544322 222
Q ss_pred Ccc-ccccCCCCCCCcCCccEEEcCCCCCccchhH-hhhCCCccEEEccCC-cCCCCCchhhhhcCCCCCEEEecCCccC
Q 042919 137 SLV-KIETEEFPGLPEYQLKALNLRNCSLQALPSI-LLQQLDLRFIDLSHN-KLQGIFPSWLLQNNTKLDTLYLLNNSLS 213 (428)
Q Consensus 137 ~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 213 (428)
+.+ .+.+..|..++. |+++++++|++..++.. +....++..+++.++ .+.......+......++.|++++|.++
T Consensus 90 N~l~~l~~~~f~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPN--LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTT--CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CcccccCchhhhhccc--cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 222 222333333332 55555555544444321 222334455555443 2221111112111233555555555554
Q ss_pred CcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhh
Q 042919 214 GNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFL 293 (428)
Q Consensus 214 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 293 (428)
..........+++++++.+++....++...+..+++|++|++++|.++...+.. +.+|++|...++.-...+|. +
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~--l 242 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT--L 242 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC--T
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC--c
Confidence 433333334455555554433222444444333555566666555555332222 33344444443332223332 3
Q ss_pred cCCCCCCEEeCC
Q 042919 294 SGCFSLSFLSLS 305 (428)
Q Consensus 294 ~~~~~L~~L~l~ 305 (428)
..+++|+.+++.
T Consensus 243 ~~l~~L~~l~l~ 254 (350)
T 4ay9_X 243 EKLVALMEASLT 254 (350)
T ss_dssp TTCCSCCEEECS
T ss_pred hhCcChhhCcCC
Confidence 345555555554
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=4.5e-17 Score=149.15 Aligned_cols=174 Identities=24% Similarity=0.196 Sum_probs=87.0
Q ss_pred cEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCcccc-CCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeC
Q 042919 226 LRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMS-EMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 304 (428)
Q Consensus 226 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 304 (428)
+.++++++.+. .+|..+ .+.++.|++++|.++...+..+. .+++|++|++++|.+. .++...+..+++|+.|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 45666666655 444433 34566666666666654444454 5666666666666655 333333445555555555
Q ss_pred CCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCC
Q 042919 305 SDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVP 384 (428)
Q Consensus 305 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 384 (428)
++|.+. ...+..|..+++|+.|++++|.++...+..|..+++|+.|+|++|.+++...
T Consensus 96 s~N~l~----------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 153 (361)
T 2xot_A 96 SSNHLH----------------------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153 (361)
T ss_dssp CSSCCC----------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred CCCcCC----------------------cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH
Confidence 555544 3333344444445555555554444444444445555555555554443333
Q ss_pred Ccc----ccccCceEEccCCcCCccCCcccccCCC--CCEEECCCCcc
Q 042919 385 SSF----NLSSLRRLYMHMNAFNGSIPGALRRSLS--LTVLDLRDNEF 426 (428)
Q Consensus 385 ~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~ 426 (428)
..+ .+++|+.|++++|++....+..+..++. ++.|++++||+
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence 322 2445555555555554333334444443 24455555544
No 109
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=3.5e-16 Score=145.06 Aligned_cols=327 Identities=13% Similarity=0.132 Sum_probs=196.7
Q ss_pred HhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCc
Q 042919 72 PCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPE 151 (428)
Q Consensus 72 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 151 (428)
.+|.+|.+|+.+.+... ++.....+|.+|++|+.+++.++ +..+ ....+..+..|+.+.+..+...+...+|....
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I-~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~- 140 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMI-GRCTFSGCYALKSILLPLMLKSIGVEAFKGCD- 140 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE-CTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC-
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEc-cchhhcccccchhhcccCceeeecceeeeccc-
Confidence 44555555555555432 33333445555555555555433 2222 12345555555555555444444444444432
Q ss_pred CCccEEEcCCCCCccc-hhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEec
Q 042919 152 YQLKALNLRNCSLQAL-PSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDI 230 (428)
Q Consensus 152 ~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 230 (428)
+....+... +..+ ..++..+++|+.+.+.++.. .+....+..+.+|+.+.+..+-..-.......+..|+.+.+
T Consensus 141 --~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 141 --FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp --CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCC
T ss_pred --ccccccCcc-ccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCCceEeCchhhccccccceeec
Confidence 222222221 1112 23455666777777765432 23333446677777777765422222233445666666666
Q ss_pred CCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccc
Q 042919 231 SHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQ 310 (428)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (428)
..+... +...... ..+|+.+.+.... .......+..+..++.+.+..+.. .+....+..+..++.+......+
T Consensus 216 ~~~~~~--i~~~~~~-~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 216 PNSLYY--LGDFALS-KTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV- 288 (394)
T ss_dssp CTTCCE--ECTTTTT-TCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE-
T ss_pred CCCceE--eehhhcc-cCCCceEEECCCc-eecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceee-
Confidence 554321 1122222 5678888876543 224556677888888888876643 34455577788888887765543
Q ss_pred cccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cc
Q 042919 311 GEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NL 389 (428)
Q Consensus 311 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~ 389 (428)
....+..+.+|+.+.+..+ +......+|.++.+|+.+++.++ ++.....+|.+|.+|+.+.+..+ ++.....++ .|
T Consensus 289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 3445778889999988754 55566778889999999999754 65566778999999999999776 666777777 88
Q ss_pred ccCceEEccCCcCCccCCcccccCCCCCEE
Q 042919 390 SSLRRLYMHMNAFNGSIPGALRRSLSLTVL 419 (428)
Q Consensus 390 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 419 (428)
.+|+.+++..+ +. ....+|..|++|+.+
T Consensus 366 ~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999999765 33 335678888888765
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.5e-17 Score=143.72 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=137.7
Q ss_pred CCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCC
Q 042919 221 SKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLS 300 (428)
Q Consensus 221 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 300 (428)
.+.++..++++.+.+. .++ .+.. +++|+.|++++|.+... + .+..+++|++|++++|.+. .++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~~~-l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQKE-LSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CHHH-HTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcc-ccc-chhh-cCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence 3456677788888776 333 3433 78999999999988743 3 6888999999999999987 4544 77899999
Q ss_pred EEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919 301 FLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380 (428)
Q Consensus 301 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 380 (428)
.|++++|.+.....+.. ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 89 ~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp EEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred EEECCCCccCCcCcccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 99999999987666555 9999999999998864 4588899999999999999854 3 6888999999999999998
Q ss_pred cCCCCcc-ccccCceEEccCCcCCcc
Q 042919 381 GSVPSSF-NLSSLRRLYMHMNAFNGS 405 (428)
Q Consensus 381 ~~~~~~~-~~~~L~~L~l~~~~~~~~ 405 (428)
+. ..+ .+++|+.|++++|++...
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 66 334 789999999999998743
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.9e-16 Score=151.94 Aligned_cols=184 Identities=22% Similarity=0.257 Sum_probs=143.4
Q ss_pred CccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEc
Q 042919 176 DLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNL 255 (428)
Q Consensus 176 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 255 (428)
+|+.|++++|.+.. ++..+ .++|+.|++++|.+...+ ..+++|+.|++++|.+++ ++. +. .+|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~---~~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LP---ASLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CC---TTCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hh---cCCCEEEC
Confidence 89999999998875 55433 378999999999888543 567899999999998884 665 42 38999999
Q ss_pred cCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccc
Q 042919 256 SENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKI 335 (428)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 335 (428)
++|.+++ .|. .+++|++|++++|.+. .++. .+++|+.|++++|.+.....+. ++|+.|++++|.++..
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~l- 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESL- 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSC-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCch-
Confidence 9998885 444 6788999999999887 4554 4789999999999888755533 8999999999988743
Q ss_pred hhhhhcCCCC-------cEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 336 QDGLSKATSL-------LELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 336 ~~~l~~~~~L-------~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
+. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 33 433 66 99999999998 678878789999999999999987766655
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.7e-16 Score=132.20 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=117.0
Q ss_pred CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccc--ccccCCCCCccee
Q 042919 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQG--EVVFPNSTNLCWL 324 (428)
Q Consensus 247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L 324 (428)
+++|+.|++++|.+.. .+ .+..+++|++|++++|.+. ..+ .+..+++|+.|++++|.+.. ...+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 6678888888887773 33 5778888888888888654 333 36678888888888888876 3447888999999
Q ss_pred ecccCccCccchhhhhcCCCCcEEEccCCc-ccccCCcccCCCCCCcEEeCCCCcCCcCCCCccccccCceEEccCCcCC
Q 042919 325 YLNNNHFSGKIQDGLSKATSLLELDLSNNM-LYGQIPPWFGNLSGLQFLDISENQLCGSVPSSFNLSSLRRLYMHMNAFN 403 (428)
Q Consensus 325 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 403 (428)
++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++++.. ....+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 999999987778888999999999999997 76 444 6888999999999999988644 2227899999999999875
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=3.7e-16 Score=132.41 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=125.8
Q ss_pred ccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCC-ccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIP-SSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 303 (428)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 303 (428)
-+.++++++.++ .+|..+ .+.++.|++++|.+....+ ..+..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEE
Confidence 457888888887 566654 4567899999998875533 45788899999999999887 55555678889999999
Q ss_pred CCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919 304 LSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 304 l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
+++|.+..... +..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|+.|++++|++..
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99998887654 7888999999999999888778888889999999999999987778888999999999999998875
Q ss_pred CC
Q 042919 382 SV 383 (428)
Q Consensus 382 ~~ 383 (428)
..
T Consensus 168 ~c 169 (220)
T 2v70_A 168 NC 169 (220)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=4.3e-16 Score=132.04 Aligned_cols=152 Identities=25% Similarity=0.295 Sum_probs=127.3
Q ss_pred ccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeC
Q 042919 225 LLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSL 304 (428)
Q Consensus 225 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 304 (428)
-+.++.+++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+. .+....+.++++|+.|++
T Consensus 13 ~~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TTEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEEC
T ss_pred CCEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEEC
Confidence 357888888776 566554 468999999999988767778889999999999999887 454455788899999999
Q ss_pred CCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919 305 SDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 305 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
++|.+..... +..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999886654 6788999999999999988888888899999999999999987777778889999999999998764
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.6e-16 Score=145.55 Aligned_cols=175 Identities=28% Similarity=0.219 Sum_probs=133.6
Q ss_pred CEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCc
Q 042919 203 DTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSN 282 (428)
Q Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (428)
+.++.+++.+...+.. -...++.|++++|.++...+..+...+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 5788888877765432 23568999999999984444434325899999999999999777788999999999999999
Q ss_pred ccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCccchhhh---hcCCCCcEEEccCCcccc
Q 042919 283 NFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGL---SKATSLLELDLSNNMLYG 357 (428)
Q Consensus 283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~i~~ 357 (428)
.+. .++...+..+++|+.|++++|.+.... .+..+++|++|++++|.+.......+ ..+++|+.|++++|.++.
T Consensus 99 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 987 666666788899999999998887653 37778888888888888876555555 557888888888888875
Q ss_pred cCCcccCCCCC--CcEEeCCCCcCC
Q 042919 358 QIPPWFGNLSG--LQFLDISENQLC 380 (428)
Q Consensus 358 ~~~~~~~~~~~--L~~L~L~~~~~~ 380 (428)
..+..+..++. ++.|+|++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44456666665 377888888765
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=3e-16 Score=136.84 Aligned_cols=171 Identities=20% Similarity=0.228 Sum_probs=140.1
Q ss_pred CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919 200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279 (428)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 279 (428)
.++..++++++.+.... ....+++|+.|++++|.+. .++ .+.. +++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555667777766543 3457889999999999987 454 4444 8999999999999986544 889999999999
Q ss_pred cCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccC
Q 042919 280 SSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQI 359 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 359 (428)
++|.+. .++.. .. ++|+.|++++|.+.....+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 93 ~~N~l~-~l~~~--~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLK-NLNGI--PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCS-CCTTC--CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccC-CcCcc--cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch-
Confidence 999987 45432 23 89999999999999887799999999999999999865 3688899999999999999855
Q ss_pred CcccCCCCCCcEEeCCCCcCCcCCC
Q 042919 360 PPWFGNLSGLQFLDISENQLCGSVP 384 (428)
Q Consensus 360 ~~~~~~~~~L~~L~L~~~~~~~~~~ 384 (428)
..+..+++|+.|++++|+++....
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -HHhccCCCCCEEeCCCCcccCCcc
Confidence 678899999999999999886543
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.1e-16 Score=141.73 Aligned_cols=196 Identities=13% Similarity=0.088 Sum_probs=135.4
Q ss_pred CCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCccc---CCCCchhhhcCCCC
Q 042919 222 KHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNF---SGELPRQFLSGCFS 298 (428)
Q Consensus 222 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~ 298 (428)
+++|+++++.+ .+. .+....+..|++|+.+++.++.+....+.+|..+.++.++....... ...+....|..+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66777777766 554 44444444477777777777766655666666666666665544211 01122223334444
Q ss_pred CC-EEeCCCcccccc-------------------------c-c-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919 299 LS-FLSLSDNHLQGE-------------------------V-V-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350 (428)
Q Consensus 299 L~-~L~l~~~~~~~~-------------------------~-~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 350 (428)
|+ .+.+........ . . ...+++|+++++.+|.++.....+|.++.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 44 222221110000 0 0 113789999999999898888889999999999999
Q ss_pred cCCcccccCCcccCCCCCCc-EEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEEC
Q 042919 351 SNNMLYGQIPPWFGNLSGLQ-FLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDL 421 (428)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~L~-~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 421 (428)
.++ ++...+.+|.+|++|+ .+++.+ .++.....++ .|++|+.|++.+|.+..+-+.+|..|++|+.++.
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 987 7767778899999999 999988 7777777888 8999999999999999788889999999999874
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=2.3e-15 Score=128.40 Aligned_cols=154 Identities=22% Similarity=0.270 Sum_probs=128.6
Q ss_pred CccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEe
Q 042919 224 DLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLS 303 (428)
Q Consensus 224 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 303 (428)
..+.++.+++.+. .+|..+ .++|+.|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 4566777777766 566544 478999999999998777888889999999999999986 67766678889999999
Q ss_pred CCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919 304 LSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 304 l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
+++|.+..... +..+++|++|++++|.+. ..+..+..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99998887654 678999999999999988 456677899999999999999996666778999999999999999875
Q ss_pred CC
Q 042919 382 SV 383 (428)
Q Consensus 382 ~~ 383 (428)
..
T Consensus 174 ~c 175 (229)
T 3e6j_A 174 EC 175 (229)
T ss_dssp TB
T ss_pred Cc
Confidence 54
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2.4e-15 Score=124.53 Aligned_cols=109 Identities=29% Similarity=0.385 Sum_probs=60.3
Q ss_pred CcceeecccCccCccchh-hhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEc
Q 042919 320 NLCWLYLNNNHFSGKIQD-GLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYM 397 (428)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l 397 (428)
++++|++++|.+....+. .+..+++|++|++++|.+++..|..+.++++|+.|+|++|++++..+..+ .+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444555555544433332 24555555666665555554455555555566666666665555555444 5556666666
Q ss_pred cCCcCCccCCcccccCCCCCEEECCCCccCC
Q 042919 398 HMNAFNGSIPGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
++|++++..|..+..+++|+.|++++|+++|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6666655555555556666666666665543
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.6e-14 Score=133.89 Aligned_cols=333 Identities=15% Similarity=0.173 Sum_probs=227.0
Q ss_pred ceeeeecccccCCCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCcccc
Q 042919 41 PLTVFVNTGICELKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSF 120 (428)
Q Consensus 41 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 120 (428)
+++.+-..+|.+|.+|+++.|.. .++.....+|.+|++|+.+++..+ ++.....+|.++++|+.+.+..+ +..+ ..
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i-~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSI-GV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE-CT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeee-cc
Confidence 35556667899999999999964 466566678999999999999865 55556778999999999887754 3322 22
Q ss_pred ccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccch-hHhhhCCCccEEEccCCcCCCCCchhhhhcC
Q 042919 121 NSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALP-SILLQQLDLRFIDLSHNKLQGIFPSWLLQNN 199 (428)
Q Consensus 121 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 199 (428)
..+..+.. ..+........+...+|..... |+.+.+.++. ..++ ..+..+++|+.+.+..+ +. .+....+..+
T Consensus 134 ~aF~~~~~-~~~~~~~~~~~i~~~aF~~c~~--L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~ 207 (394)
T 4fs7_A 134 EAFKGCDF-KEITIPEGVTVIGDEAFATCES--LEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC 207 (394)
T ss_dssp TTTTTCCC-SEEECCTTCCEECTTTTTTCTT--CCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred eeeecccc-cccccCccccccchhhhcccCC--CcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence 34555543 3333434444555566666554 8888887643 3443 45566778888888765 33 2333345678
Q ss_pred CCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEEC
Q 042919 200 TKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDL 279 (428)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 279 (428)
..|+.+.+..+.... .........|+.+.+..... .+....+..+..++.+.+..+... .....+..+..++.+..
T Consensus 208 ~~L~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~~~--~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~ 283 (394)
T 4fs7_A 208 ILLENMEFPNSLYYL-GDFALSKTGVKNIIIPDSFT--ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIY 283 (394)
T ss_dssp TTCCBCCCCTTCCEE-CTTTTTTCCCCEEEECTTCC--EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEE
T ss_pred cccceeecCCCceEe-ehhhcccCCCceEEECCCce--ecccccccccccceeEEcCCCcce-eeccccccccccceecc
Confidence 888887776554321 12233456788887765432 233334444888999998876443 55667888899998887
Q ss_pred cCcccCCCCchhhhcCCCCCCEEeCCCc-ccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccccc
Q 042919 280 SSNNFSGELPRQFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ 358 (428)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 358 (428)
.... ++...+..+.+|+.+.+..+ ...+..++..|.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++..
T Consensus 284 ~~~~----i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 284 GSVI----VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp CSSE----ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred Ccee----eccccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence 7654 34455778899999988654 2224455889999999999743 66667788999999999999876 6656
Q ss_pred CCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceE
Q 042919 359 IPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRL 395 (428)
Q Consensus 359 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L 395 (428)
...+|.+|++|+.+++..+ +... ...+ .|++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR-LEQY-RYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence 6778999999999999764 3322 2344 77887765
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=3.6e-14 Score=130.94 Aligned_cols=267 Identities=11% Similarity=0.094 Sum_probs=116.5
Q ss_pred CCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEE
Q 042919 126 HSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTL 205 (428)
Q Consensus 126 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 205 (428)
+..++.+.+.+.-..+...+|... +|+.+.+..+ +..++...+.-.+|+.+.+.. .+.... ...+..|.+|+.+
T Consensus 112 ~~~l~~i~ip~~i~~I~~~aF~~~---~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~-~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNSVKSIPKDAFRNS---QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLK-EDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTTCCEECTTTTTTC---CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEEC-SSTTTTCTTCCEE
T ss_pred cCCccEEEECCccCEehHhhcccC---CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEeh-HHHhhCcccCCee
Confidence 345555555554444555555432 2555555543 444443333333555555554 232222 2223455555555
Q ss_pred EecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccC
Q 042919 206 YLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFS 285 (428)
Q Consensus 206 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 285 (428)
.++.+.+.........+.+|+.+.+..+ +. .+....+..+++|+.+++..+ +......+|.+ .+|+++.+.++ +.
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CC
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-cc
Confidence 5555444332222222334444444322 21 222222223444555544432 22223333333 34444444221 21
Q ss_pred CCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCC
Q 042919 286 GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGN 365 (428)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 365 (428)
.++...|.+|++|+.+.+.++.+.. +........+|..+++|+.+.+.+ .++.....+|.+
T Consensus 261 -~I~~~aF~~c~~L~~l~l~~~~~~~-----------------~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~ 321 (401)
T 4fdw_A 261 -NIASRAFYYCPELAEVTTYGSTFND-----------------DPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGG 321 (401)
T ss_dssp -EECTTTTTTCTTCCEEEEESSCCCC-----------------CTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTT
T ss_pred -EEChhHhhCCCCCCEEEeCCccccC-----------------CcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcC
Confidence 2333334444444444443332210 000123344555555555555553 244344455555
Q ss_pred CCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCC-CCCEEECCCC
Q 042919 366 LSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSL-SLTVLDLRDN 424 (428)
Q Consensus 366 ~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 424 (428)
|++|+.+.|..+ ++.....++ .| +|+.+++.+|......+..|..++ .++.|++..+
T Consensus 322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 556666655433 444444444 44 566666666555544445555553 5555555443
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-14 Score=119.00 Aligned_cols=109 Identities=26% Similarity=0.311 Sum_probs=52.5
Q ss_pred CCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEc
Q 042919 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYM 397 (428)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l 397 (428)
++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+..+ .+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 344444444444443333344445555555555555543333344455555555555555554444333 4455555555
Q ss_pred cCCcCCccCCcccccCCCCCEEECCCCccC
Q 042919 398 HMNAFNGSIPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
++|.+....+..+..+++|+.|++++|+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555554333333444555555555555544
No 123
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=5.7e-14 Score=129.61 Aligned_cols=236 Identities=14% Similarity=0.139 Sum_probs=150.0
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (428)
++.+.+.+ .+..++...+.-.+|+.+.+..+ +......+| .+ .+|+.+.+...
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF-~~-~~L~~i~lp~~----------------------- 167 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAF-FN-STVQEIVFPST----------------------- 167 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTT-TT-CCCCEEECCTT-----------------------
T ss_pred ccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhc-CC-CCceEEEeCCC-----------------------
Confidence 66666654 34555443333346777776654 332332233 23 24666555431
Q ss_pred ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcc-cccc
Q 042919 234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH-LQGE 312 (428)
Q Consensus 234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~ 312 (428)
+. .+....+..|++|+.+++..+.+.......|. +.+|+++.+..+ +. .+...+|.++++|+.+.+..+- ..+.
T Consensus 168 -l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~ 242 (401)
T 4fdw_A 168 -LE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQ 242 (401)
T ss_dssp -CC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTTCCEECT
T ss_pred -cc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCCccCccc
Confidence 11 22222333356666666666555544444444 456666666543 22 4555556666666666665431 1122
Q ss_pred cccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc-----ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY-----GQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 313 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
.++.. .+|+.+.+. +.+......+|.++++|+.+.+.++.+. .....+|.+|++|+.+.+.. .++......+
T Consensus 243 ~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF 319 (401)
T 4fdw_A 243 EAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLL 319 (401)
T ss_dssp TTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTT
T ss_pred ccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhh
Confidence 33444 578888884 4456566778889999999999877654 35677899999999999994 5777777778
Q ss_pred -ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCcc
Q 042919 388 -NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNEF 426 (428)
Q Consensus 388 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 426 (428)
.|.+|+.+++..+ ++.+.+.+|..| +|+.+++.+|.+
T Consensus 320 ~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 320 GGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred cCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 8999999999665 666788899999 999999999864
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.9e-15 Score=122.45 Aligned_cols=131 Identities=24% Similarity=0.180 Sum_probs=69.2
Q ss_pred CCCCEEECcCcccC-CCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919 272 KRLESLDLSSNNFS-GELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350 (428)
Q Consensus 272 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 350 (428)
++|++|++++|.+. +.++.. +..+++|+.|++++|.+.....+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 55666666666654 233322 3455566666666665555444555555666666555555444444444555555555
Q ss_pred cCCcccccC-CcccCCCCCCcEEeCCCCcCCcCCC---Ccc-ccccCceEEccCCcCC
Q 042919 351 SNNMLYGQI-PPWFGNLSGLQFLDISENQLCGSVP---SSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 351 ~~~~i~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~ 403 (428)
++|.+++.. +..+..+++|+.|++++|++++..+ ..+ .+++|+.|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555321 1445555555555555555554333 122 4555555555555554
No 125
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=3.6e-13 Score=124.79 Aligned_cols=335 Identities=12% Similarity=0.119 Sum_probs=156.9
Q ss_pred ceeeeecccccCCC-CCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCc---cCcchhhhhccCCCCcEEeCCCCccCC
Q 042919 41 PLTVFVNTGICELK-NLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ---LTGNLQSVIANIKSLEYLSLDDNNFEG 116 (428)
Q Consensus 41 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~ 116 (428)
+++.+-..+|.+++ .|+++.+-. .++.+...+|.+|.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +..
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 34455556677774 478887753 3554556677788888888776542 44445567777777777766553 332
Q ss_pred ccccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhh
Q 042919 117 LFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLL 196 (428)
Q Consensus 117 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 196 (428)
+ ....+..+.+|+.+.+......+....|..... |+.+.+.++ +..+....+....|+.+.+...-.. .. ...+
T Consensus 128 I-~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~--L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~-~~af 201 (394)
T 4gt6_A 128 I-DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYS--LHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IG-TNAF 201 (394)
T ss_dssp E-CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTT--CCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-EC-TTTT
T ss_pred e-hhhhhhhhcccccccccceeeeecccceecccc--cccccccce-eeEeccccccccceeEEEECCcccc-cc-cchh
Confidence 2 224566777777777766655655666655544 666666543 4445444444556666665543211 11 1122
Q ss_pred hcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCE
Q 042919 197 QNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLES 276 (428)
Q Consensus 197 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 276 (428)
..+..++................. ..+... ............+..+.+... +......+|..+..|++
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~ 269 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLY----------EKSANG-DYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLAS 269 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEE----------EECTTS-CEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCE
T ss_pred hhccccceecccccccccccceee----------cccccc-cccccccccccccceEEcCCc-ceEcccceeeecccccE
Confidence 345555555443322211100000 000000 000000000112223332221 11122334445555555
Q ss_pred EECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccc
Q 042919 277 LDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLY 356 (428)
Q Consensus 277 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 356 (428)
+.+..... .+.... +..+.+|+.+.+. ..+......+|.++.+|+.+.+..+ ++
T Consensus 270 i~lp~~~~--~I~~~a----------------------F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~ 323 (394)
T 4gt6_A 270 VKMPDSVV--SIGTGA----------------------FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT 323 (394)
T ss_dssp EECCTTCC--EECTTT----------------------TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC
T ss_pred Eecccccc--eecCcc----------------------cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc
Confidence 55433221 223333 4444555555543 2233344445555566666655432 33
Q ss_pred ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCCccCCcccccCCCCCEEECCCCc
Q 042919 357 GQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFNGSIPGALRRSLSLTVLDLRDNE 425 (428)
Q Consensus 357 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 425 (428)
.....+|.+|.+|+.+.|-.+ ++.....++ .|.+|+.+++.++... ...+..+..|+.+.+..+.
T Consensus 324 ~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 324 QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 334445666666666666433 444444445 5566666666655432 1334555566666655443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=3.5e-17 Score=157.89 Aligned_cols=196 Identities=18% Similarity=0.166 Sum_probs=133.2
Q ss_pred CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCC-------------CCCCCCccccCCCCCCEEE-CcCcccC
Q 042919 220 SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENG-------------FEGRIPSSMSEMKRLESLD-LSSNNFS 285 (428)
Q Consensus 220 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~ 285 (428)
..+++|+.|+++++.+. .+|..+.. +++|+.|+++++. ..+..+..+..+++|++|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 34566667777777665 55655555 6667777665442 2234455666677777777 4444322
Q ss_pred CCCchhh-----hc--CCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCccccc
Q 042919 286 GELPRQF-----LS--GCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ 358 (428)
Q Consensus 286 ~~~~~~~-----~~--~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 358 (428)
.+.... +. ....|+.|++++|.+...+.+..+++|+.|++++|.++ ..+..+..+++|+.|++++|.+++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 111100 00 12358888888888877666778888888888888887 556678888888888888888874
Q ss_pred CCcccCCCCCCcEEeCCCCcCCcCC-CCcc-ccccCceEEccCCcCCccCCc---ccccCCCCCEEEC
Q 042919 359 IPPWFGNLSGLQFLDISENQLCGSV-PSSF-NLSSLRRLYMHMNAFNGSIPG---ALRRSLSLTVLDL 421 (428)
Q Consensus 359 ~~~~~~~~~~L~~L~L~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l 421 (428)
+| .+.++++|+.|+|++|.+++.. +..+ .+++|+.|++++|++.+..|. .+..+|+|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 55 7888888888888888888765 6666 788888888888888754332 2345788888864
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=6.9e-15 Score=132.90 Aligned_cols=259 Identities=15% Similarity=0.197 Sum_probs=129.7
Q ss_pred CCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCccCcchhhhhcc--------CCCCcEEeCCCCccCCcccccccc
Q 042919 53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIAN--------IKSLEYLSLDDNNFEGLFSFNSLK 124 (428)
Q Consensus 53 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~ 124 (428)
+++|++|+|+++.+...... -..++.++.+.+..+.+ ...+|.+ |++|+.+++++ .+..+ +...+.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I-~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI-EDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEE-CTTTTT
T ss_pred hccCeEEecCcceeEEecCc-ccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccch-hHHHhh
Confidence 78899999999987711000 01111223333333322 2334455 66666666665 44443 224556
Q ss_pred CCCCCcEEEccCCcc-ccccCCCCCCCcCCccEEEcCCCC----Cccc-hhHhhhCCCcc-EEEccCCcCCCCCchhhhh
Q 042919 125 NHSKLQVFKLSNSLV-KIETEEFPGLPEYQLKALNLRNCS----LQAL-PSILLQQLDLR-FIDLSHNKLQGIFPSWLLQ 197 (428)
Q Consensus 125 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~----~~~l-~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~ 197 (428)
+|++|+.++++++.. .+...+|.... ++..+...... ...+ ...+..+..|+ .+.+.... ..+..++.
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~--~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~ 196 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSV--TAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMK 196 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTT--CEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHH
T ss_pred cCcccceEEcCCCCccccchhhhcCCC--ceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhh
Confidence 666666666665543 44444444422 24444333311 0111 11223344444 33333211 11111111
Q ss_pred ---cCCCCCEEEecCCccCCcccCC-CCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCC
Q 042919 198 ---NNTKLDTLYLLNNSLSGNFQLP-SSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKR 273 (428)
Q Consensus 198 ---~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 273 (428)
...+++.+.+.+.-........ ..+++|+.+++.++.+. .++...+..+++|+++++.++ +..+...+|.++++
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence 1233444444433211110000 12456666666666655 455555555777777777766 55456666777777
Q ss_pred CC-EEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeec
Q 042919 274 LE-SLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYL 326 (428)
Q Consensus 274 L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l 326 (428)
|+ ++.+.+ .+. .++...|.+|++|+.+++..+.+.... +|.++++|+.++.
T Consensus 275 L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 275 LAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77 777766 443 556666777777777777666665433 3777777777653
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=4.2e-14 Score=117.01 Aligned_cols=106 Identities=32% Similarity=0.380 Sum_probs=56.9
Q ss_pred CcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEcc
Q 042919 320 NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMH 398 (428)
Q Consensus 320 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~ 398 (428)
+|++|++++|.++. .+..|..+++|+.|++++|.+++..+..|.++++|+.|+|++|.+++..+..+ .+++|+.|+++
T Consensus 32 ~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 44455555554442 22445555555555555555554444455555555555555555555554444 45555555555
Q ss_pred CCcCCccCCcccccCCCCCEEECCCCcc
Q 042919 399 MNAFNGSIPGALRRSLSLTVLDLRDNEF 426 (428)
Q Consensus 399 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 426 (428)
+|.+....+..|..+++|+.|++++|++
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 5555544444455555556666655554
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.4e-14 Score=117.26 Aligned_cols=128 Identities=23% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCCCEEeCCCcccc--cccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919 297 FSLSFLSLSDNHLQ--GEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373 (428)
Q Consensus 297 ~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 373 (428)
+.|+.|++++|.+. .... +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 2221 34455555555555555433 4445555555555555555543444444455555555
Q ss_pred CCCCcCCcCCC-Ccc-ccccCceEEccCCcCCccCC---cccccCCCCCEEECCCCcc
Q 042919 374 ISENQLCGSVP-SSF-NLSSLRRLYMHMNAFNGSIP---GALRRSLSLTVLDLRDNEF 426 (428)
Q Consensus 374 L~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 426 (428)
+++|++++... ..+ .+++|+.|++++|++....+ ..+..+++|+.|++++|++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55555554321 222 45555555555555553322 2455555555555555543
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.2e-15 Score=116.48 Aligned_cols=125 Identities=20% Similarity=0.168 Sum_probs=84.6
Q ss_pred CCCCEEeCCCcccc--cccc-cCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919 297 FSLSFLSLSDNHLQ--GEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373 (428)
Q Consensus 297 ~~L~~L~l~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 373 (428)
++++.|++++|.+. .... +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666655 2222 45667777777777776654 5566777777777777777755666666677788888
Q ss_pred CCCCcCCcCC-CCcc-ccccCceEEccCCcCCccCC---cccccCCCCCEEECCC
Q 042919 374 ISENQLCGSV-PSSF-NLSSLRRLYMHMNAFNGSIP---GALRRSLSLTVLDLRD 423 (428)
Q Consensus 374 L~~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~ 423 (428)
+++|++++.. +..+ .+++|+.|++++|++....+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888776532 2334 67788888888888775444 4677788888888764
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=2.3e-14 Score=118.62 Aligned_cols=111 Identities=21% Similarity=0.233 Sum_probs=66.0
Q ss_pred CCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCccccccc--ccCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919 273 RLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEV--VFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350 (428)
Q Consensus 273 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 350 (428)
++++|++++|.+.+..+...+..+++|+.|++++|.+.... .+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 44444444444432111122344445555555555444332 2455666666666666666655666777777777777
Q ss_pred cCCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383 (428)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 383 (428)
++|.+++..|..+..+++|+.|++++|++.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 777777666777777777888888887776543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=8.2e-15 Score=119.62 Aligned_cols=133 Identities=21% Similarity=0.200 Sum_probs=76.6
Q ss_pred ccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcE
Q 042919 268 MSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLE 347 (428)
Q Consensus 268 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 347 (428)
+..+++|++|++++|.+. .++. .....++|+.|++++|.+.....+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 445667777777777766 3332 22223367777777776665544666666666666666665444344456666666
Q ss_pred EEccCCcccccCCc--ccCCCCCCcEEeCCCCcCCcCCCC---cc-ccccCceEEccCCcCC
Q 042919 348 LDLSNNMLYGQIPP--WFGNLSGLQFLDISENQLCGSVPS---SF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 348 L~l~~~~i~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~---~~-~~~~L~~L~l~~~~~~ 403 (428)
|++++|.++ .+|. .+..+++|+.|++++|+++..... .+ .+++|+.|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666665 3333 455666666666666666533221 12 5566666666665543
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=8.5e-17 Score=155.17 Aligned_cols=175 Identities=22% Similarity=0.225 Sum_probs=140.5
Q ss_pred CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcc-------------cCCCCchhhhcCCCCCCEEe-CCCcccccc
Q 042919 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNN-------------FSGELPRQFLSGCFSLSFLS-LSDNHLQGE 312 (428)
Q Consensus 247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~L~~L~-l~~~~~~~~ 312 (428)
+++|+.|++++|.+. .+|..++++++|+.|++.+|. .. ......+..+++|+.|+ ++.+.+...
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~-~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-LYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG-GGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccc-cCCHHHHHHHHhcccCcchhhcccchh
Confidence 678999999999887 678889999999999987764 22 22333456677777777 454433221
Q ss_pred cc-------cC--CCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919 313 VV-------FP--NSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383 (428)
Q Consensus 313 ~~-------~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 383 (428)
.. +. ....|+.|++++|.+++. +. +..+++|+.|++++|.++ .+|..++++++|+.|+|++|.+++.
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l- 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV- 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-
Confidence 11 11 123599999999999864 44 899999999999999999 8899999999999999999999964
Q ss_pred CCcc-ccccCceEEccCCcCCccC-CcccccCCCCCEEECCCCccCC
Q 042919 384 PSSF-NLSSLRRLYMHMNAFNGSI-PGALRRSLSLTVLDLRDNEFSG 428 (428)
Q Consensus 384 ~~~~-~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 428 (428)
+ .+ .+++|+.|++++|.+++.. |..++.+++|+.|++++|+++|
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 4 45 8999999999999999766 9999999999999999999875
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.2e-14 Score=112.73 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=72.7
Q ss_pred CCCcEEEccCCCCC-CCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCcceeec
Q 042919 248 PELLSLNLSENGFE-GRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNLCWLYL 326 (428)
Q Consensus 248 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 326 (428)
++++.|++++|.+. +..+..+..+++|++|++++|.+. ....+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~~~~~~l~~L~~L~L 71 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-------------------------SIANLPKLNKLKKLEL 71 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-------------------------CCTTCCCCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-------------------------CchhhhcCCCCCEEEC
Confidence 45666666666655 334445555556666666555554 3323445555566666
Q ss_pred ccCccCccchhhhhcCCCCcEEEccCCccccc-CCcccCCCCCCcEEeCCCCcCCcCCC---Ccc-ccccCceEEcc
Q 042919 327 NNNHFSGKIQDGLSKATSLLELDLSNNMLYGQ-IPPWFGNLSGLQFLDISENQLCGSVP---SSF-NLSSLRRLYMH 398 (428)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~---~~~-~~~~L~~L~l~ 398 (428)
++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+.|++++|++++..+ ..+ .+++|+.|+++
T Consensus 72 s~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66665544555555566666666666666632 23556666677777777776665444 233 56666666665
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=3.3e-13 Score=111.55 Aligned_cols=126 Identities=27% Similarity=0.318 Sum_probs=96.4
Q ss_pred cEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeeccc
Q 042919 251 LSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNN 328 (428)
Q Consensus 251 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~ 328 (428)
+.++++++.+. ..|..+ .++|++|++++|.+. .++ ..+..+++|+.|++++|.+..... +..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57888888877 345443 367899999998887 666 456788888888888888876554 77788888888888
Q ss_pred CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919 329 NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 329 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88877777778888888888888888875555567778888888888887653
No 136
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=8.4e-12 Score=115.57 Aligned_cols=309 Identities=14% Similarity=0.186 Sum_probs=182.5
Q ss_pred eeeeecccccCCCCCcEEeccCCc---CCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCcc
Q 042919 42 LTVFVNTGICELKNLVELDLSKNN---LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLF 118 (428)
Q Consensus 42 ~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 118 (428)
++.+-..+|.+|.+|+++.+..+. ++.....+|..+.+|+.+.+... ++.....+|..+.+|+.+.+... +..+
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I- 151 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSV- 151 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEE-
T ss_pred eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeee-
Confidence 344556779999999999998653 55455678999999999888765 45456678999999999999864 3333
Q ss_pred ccccccCCCCCcEEEccCCccccccCCCCCCCcCCccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhc
Q 042919 119 SFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQLKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQN 198 (428)
Q Consensus 119 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 198 (428)
....+..+..|+.+.+..+...+...+|... +|+.+.+...-..--...+..+..++............ ...++..
T Consensus 152 ~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~---~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~~ 227 (394)
T 4gt6_A 152 ADGMFSYCYSLHTVTLPDSVTAIEERAFTGT---ALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI-DNVLYEK 227 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCEECTTTTTTC---CCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS-SSCEEEE
T ss_pred cccceecccccccccccceeeEecccccccc---ceeEEEECCcccccccchhhhccccceecccccccccc-cceeecc
Confidence 3357889999999999988778877777653 49999998754433345667777888887765543321 1111111
Q ss_pred CCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEE
Q 042919 199 NTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLD 278 (428)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 278 (428)
.......... ......+..+.+... +. .+....+..+..|+.+.+...... .....+.+++.|+.+.
T Consensus 228 ~~~~~~~~~~----------~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~ 294 (394)
T 4gt6_A 228 SANGDYALIR----------YPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIE 294 (394)
T ss_dssp CTTSCEEEEE----------CCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEE
T ss_pred cccccccccc----------cccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCccccccccccccc
Confidence 1111111111 011122333333221 11 222233444788999988765443 5667788899999999
Q ss_pred CcCcccCCCCchhhhcCCCCCCEEeCCCc-ccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccc
Q 042919 279 LSSNNFSGELPRQFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYG 357 (428)
Q Consensus 279 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 357 (428)
+... +. .++...|.+|.+|+.+.+..+ ...+..+|.+|.+|+++.+..+ ++.....+|.+|.+|+.+++.++....
T Consensus 295 l~~~-i~-~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 295 FSSR-IT-ELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CCCc-cc-ccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh
Confidence 8643 33 566667777777777777543 1112333555555555555432 333444555555555555555443220
Q ss_pred cCCcccCCCCCCcEEeCCC
Q 042919 358 QIPPWFGNLSGLQFLDISE 376 (428)
Q Consensus 358 ~~~~~~~~~~~L~~L~L~~ 376 (428)
..+..+..|+.+.+..
T Consensus 372 ---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 372 ---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp ---HTCBCCCCC-------
T ss_pred ---hhhhccCCCCEEEeCC
Confidence 2334444455554443
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=6.6e-13 Score=108.39 Aligned_cols=128 Identities=27% Similarity=0.331 Sum_probs=74.8
Q ss_pred CcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecc
Q 042919 250 LLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLN 327 (428)
Q Consensus 250 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~ 327 (428)
.+.++++++.+.. .|..+ .++|++|++++|.+. .++...+..+++|+.|++++|.+..... +..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4566677666653 33222 356777777777765 4444445566666666666666654433 4556666666666
Q ss_pred cCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCc
Q 042919 328 NNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 328 ~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~ 381 (428)
+|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 666655555555556666666666666654434444556666666666665554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.5e-13 Score=112.14 Aligned_cols=128 Identities=17% Similarity=0.125 Sum_probs=70.1
Q ss_pred CCCCCCEEeCCCcccccccccCCCC-CcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEe
Q 042919 295 GCFSLSFLSLSDNHLQGEVVFPNST-NLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLD 373 (428)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 373 (428)
.+.+|+.|++++|.+.....+..+. +|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 4556666666666655443333333 666666666665543 4455566666666666666533333345566666666
Q ss_pred CCCCcCCcCCC-Ccc-ccccCceEEccCCcCCccCCc----ccccCCCCCEEECCCCc
Q 042919 374 ISENQLCGSVP-SSF-NLSSLRRLYMHMNAFNGSIPG----ALRRSLSLTVLDLRDNE 425 (428)
Q Consensus 374 L~~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~ 425 (428)
+++|++++... ..+ .+++|+.|++++|++. ..|. .+..+++|+.||+++|+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 66666543222 122 5566666666666665 3333 25566666666666554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=9.4e-13 Score=106.49 Aligned_cols=103 Identities=27% Similarity=0.319 Sum_probs=47.3
Q ss_pred CEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919 300 SFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379 (428)
Q Consensus 300 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~ 379 (428)
+.++++++.+..... .-.++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus 12 ~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 445555554443222 1124445555555554444444444445555555555554433333344445555555555554
Q ss_pred CcCCCCcc-ccccCceEEccCCcCC
Q 042919 380 CGSVPSSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 380 ~~~~~~~~-~~~~L~~L~l~~~~~~ 403 (428)
++..+..+ .+++|+.|++++|++.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 44433333 4444555555555443
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=6.2e-14 Score=139.48 Aligned_cols=120 Identities=26% Similarity=0.271 Sum_probs=69.4
Q ss_pred CCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcC
Q 042919 264 IPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKA 342 (428)
Q Consensus 264 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 342 (428)
.+..+..++.|+.|++++|.+. .++...+ .++.|+.|++++|.+..... +..+++|+.|+|++|.++ ..+..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444555666666666666655 4544433 56666666666666653322 556666666666666666 345556666
Q ss_pred CCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 343 TSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 343 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
++|+.|+|++|.++ .+|..|..+++|+.|+|++|++++..+..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666666666665 556566666666667776666665544443
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=4.1e-13 Score=133.62 Aligned_cols=175 Identities=23% Similarity=0.286 Sum_probs=70.5
Q ss_pred CCCcEEEccCCCCCCCCCccccCCCCCCEEECcC-----cccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCc
Q 042919 248 PELLSLNLSENGFEGRIPSSMSEMKRLESLDLSS-----NNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNL 321 (428)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L 321 (428)
+.++.|++.++.+.. .+..+.....|..+.+.. +.+. .+...+..+..|+.|++++|.+..... +..+++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 456777777666653 222222222222222221 1111 223334555666666666666553332 3455566
Q ss_pred ceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCC
Q 042919 322 CWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMN 400 (428)
Q Consensus 322 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~ 400 (428)
++|+|++|.++ ..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.++. .+..+ .+++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCC
Confidence 66666666555 34445555666666666666665 455556666666666666665552 23334 5566666666666
Q ss_pred cCCccCCcccccCC-CCCEEECCCCccCC
Q 042919 401 AFNGSIPGALRRSL-SLTVLDLRDNEFSG 428 (428)
Q Consensus 401 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 428 (428)
++.+..|..+..+. .+..+++++|.++|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 66555554443321 11224455554443
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=1.5e-15 Score=126.51 Aligned_cols=111 Identities=27% Similarity=0.288 Sum_probs=60.4
Q ss_pred cccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc-cCCCCCcceeecccCccCccchhhhhcCCCC
Q 042919 267 SMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-FPNSTNLCWLYLNNNHFSGKIQDGLSKATSL 345 (428)
Q Consensus 267 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 345 (428)
.+..+++|++|++++|.+. .++ .+..+++|+.|++++|.+..... +..+++|++|++++|.+++. + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 5666677777777777665 344 34556666666666666553322 23345566666666555532 1 34555555
Q ss_pred cEEEccCCcccccCC-cccCCCCCCcEEeCCCCcCCcC
Q 042919 346 LELDLSNNMLYGQIP-PWFGNLSGLQFLDISENQLCGS 382 (428)
Q Consensus 346 ~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~~~~~~~ 382 (428)
+.|++++|.+++..+ ..+..+++|+.|++++|++.+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555555542211 2455555555555555555433
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=3.3e-12 Score=103.63 Aligned_cols=103 Identities=24% Similarity=0.322 Sum_probs=56.0
Q ss_pred CEEeCCCcccccccccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919 300 SFLSLSDNHLQGEVVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379 (428)
Q Consensus 300 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~ 379 (428)
+.++++++.+...+. .-.++|++|++++|.+.+..+..|..+++|+.|++++|++++..+..|.++++|+.|+|++|++
T Consensus 15 ~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 455555555543322 1125566666666665555555555566666666666665543333445556666666666665
Q ss_pred CcCCCCcc-ccccCceEEccCCcCC
Q 042919 380 CGSVPSSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 380 ~~~~~~~~-~~~~L~~L~l~~~~~~ 403 (428)
++..+..+ .+++|+.|++++|++.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ceeCHHHhccccCCCEEEeCCCCcc
Confidence 54444434 4556666666666554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.3e-14 Score=132.61 Aligned_cols=133 Identities=22% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc------c-CCCCCcceeecccCccCccc----hhhhh
Q 042919 272 KRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV------F-PNSTNLCWLYLNNNHFSGKI----QDGLS 340 (428)
Q Consensus 272 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------~-~~~~~L~~L~l~~~~~~~~~----~~~l~ 340 (428)
++|++|++++|.+.+.........+++|+.|++++|.+.+... + ...++|++|++++|.+++.. ...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4555555555554322222222233455555555555543322 1 23455666666666654322 22234
Q ss_pred cCCCCcEEEccCCccccc----CCcccCCCCCCcEEeCCCCcCCcCCCCcc-----ccccCceEEccCCcCCc
Q 042919 341 KATSLLELDLSNNMLYGQ----IPPWFGNLSGLQFLDISENQLCGSVPSSF-----NLSSLRRLYMHMNAFNG 404 (428)
Q Consensus 341 ~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~ 404 (428)
.+++|++|++++|.+++. ++..+..+++|+.|+|++|.+++.....+ .+++|++|++++|++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 556666666666665532 23344555566666666666654333222 34566666666666654
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=3.5e-14 Score=129.78 Aligned_cols=157 Identities=21% Similarity=0.206 Sum_probs=117.1
Q ss_pred CCCCCEEECcCcccCCCCchh---hhc-CCCCCCEEeCCCcccccccc---cCCCCCcceeecccCccCccchhhh----
Q 042919 271 MKRLESLDLSSNNFSGELPRQ---FLS-GCFSLSFLSLSDNHLQGEVV---FPNSTNLCWLYLNNNHFSGKIQDGL---- 339 (428)
Q Consensus 271 ~~~L~~L~l~~~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l---- 339 (428)
++.|++|++++|.++...... .+. ....|+.|++++|.+.+... ...+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356777777777765222111 111 23699999999999876443 3346789999999999986655554
Q ss_pred -hcCCCCcEEEccCCccccc----CCcccCCCCCCcEEeCCCCcCCcCCC----Ccc-ccccCceEEccCCcCCcc----
Q 042919 340 -SKATSLLELDLSNNMLYGQ----IPPWFGNLSGLQFLDISENQLCGSVP----SSF-NLSSLRRLYMHMNAFNGS---- 405 (428)
Q Consensus 340 -~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~-~~~~L~~L~l~~~~~~~~---- 405 (428)
...++|++|++++|.+++. ++..+..+++|++|+|++|.+++... ..+ .+++|+.|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2468999999999998753 34455778999999999999886543 223 567999999999999753
Q ss_pred CCcccccCCCCCEEECCCCccC
Q 042919 406 IPGALRRSLSLTVLDLRDNEFS 427 (428)
Q Consensus 406 ~~~~~~~~~~L~~L~l~~~~~~ 427 (428)
++..+..+++|+.|++++|+|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 3455667899999999999986
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.35 E-value=1e-10 Score=107.71 Aligned_cols=136 Identities=14% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCc-ccccccccCCCCCcceee
Q 042919 247 LPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDN-HLQGEVVFPNSTNLCWLY 325 (428)
Q Consensus 247 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~ 325 (428)
+.+++.+.+..+ +.......+..+..|+.+.+..+ +. .+....+..+..|+.+.+..+ ......++..|.+|+.+.
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~ 292 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVV 292 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhccccccccceecccccccccccccccc
Confidence 556666666543 22234455666677777776544 22 344555666667777666432 111233466667777777
Q ss_pred cccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc
Q 042919 326 LNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF 387 (428)
Q Consensus 326 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 387 (428)
+.++.++.....+|.++.+|+.+.+..+ ++.....+|.+|++|+.+.+..+ ++.+...++
T Consensus 293 l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 293 MDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred ccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 7666666555666777777777777543 44344556777777777766543 444444444
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.34 E-value=1.2e-10 Score=107.33 Aligned_cols=316 Identities=13% Similarity=0.085 Sum_probs=181.8
Q ss_pred hhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccccccCCCCCCCcCC
Q 042919 74 LSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVKIETEEFPGLPEYQ 153 (428)
Q Consensus 74 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 153 (428)
+....+|+.+.+... ++.....+|.+|.+|+.+++..+ ++.+. ...+..+ +|+.+.+..+-..+...+|... +
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig-~~aF~~c-~l~~i~~~~~l~~I~~~aF~~~---~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIG-DGAFADT-KLQSYTGMERVKKFGDYVFQGT---D 114 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEEC-TTTTTTC-CCCEEEECTTCCEECTTTTTTC---C
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEec-hhhhcCC-CCceEECCceeeEeccceeccC---C
Confidence 334455666655543 33344455666666666666543 33221 1334444 4555555444334444444432 3
Q ss_pred ccEEEcCCCCCccchhHhhhCCCccEEEccCCcCCCCCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCC
Q 042919 154 LKALNLRNCSLQALPSILLQQLDLRFIDLSHNKLQGIFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHN 233 (428)
Q Consensus 154 L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (428)
|+.+.+.++ +..+....+...+++.+.+..+ +.... ...+..+..++.+.+............... ..
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~- 182 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLY--------NK- 182 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEE--------ET-
T ss_pred cccccCCCc-cccccccccccceeeeeeccce-eeccc-cchhcccccccccccccccceeecccceec--------cc-
Confidence 666666543 2333333333334555554432 11111 112345566666655443321110000000 00
Q ss_pred ccccCCCchhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcc-cccc
Q 042919 234 KFSCQLPGNMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNH-LQGE 312 (428)
Q Consensus 234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~ 312 (428)
....... +..+..+..+.+...... .....+..+..|+.+.+..+- . .+....+.++..|+.+.+..+- ..+.
T Consensus 183 --~~~~~~~-~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~v~~I~~ 256 (379)
T 4h09_A 183 --NKTILES-YPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKNVTSIGS 256 (379)
T ss_dssp --TSSEEEE-CCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTTCCEECT
T ss_pred --ccceecc-ccccccccccccccceeE-Eeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCCccEeCc
Confidence 0000111 112445666665544322 345566778889999886552 2 4556667789999999986641 2234
Q ss_pred cccCCCCCcceeecccCccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-cccc
Q 042919 313 VVFPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSS 391 (428)
Q Consensus 313 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~ 391 (428)
.++..+.+|+.+.+... +......+|..+.+|+.+.+.++.++.....+|.+|.+|+.+.|..+ ++.....++ .|.+
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 45888999999999654 55566778999999999999988887667789999999999999754 666667777 8899
Q ss_pred CceEEccCCcCCccCCcccccCCCCC
Q 042919 392 LRRLYMHMNAFNGSIPGALRRSLSLT 417 (428)
Q Consensus 392 L~~L~l~~~~~~~~~~~~~~~~~~L~ 417 (428)
|+.+.+..+ ++.+...+|..|+.++
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred CCEEEECCc-cCEEchhHhhCCCCCc
Confidence 999999765 6556777888775443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=4.6e-14 Score=117.53 Aligned_cols=133 Identities=27% Similarity=0.273 Sum_probs=101.9
Q ss_pred hhhhcCCCCcEEEccCCCCCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccccCCCCCc
Q 042919 242 NMGKILPELLSLNLSENGFEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVVFPNSTNL 321 (428)
Q Consensus 242 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L 321 (428)
.+.. +++|++|++++|.+.. .+ .+..+++|++|++++|.+. .++. .+..+++|+.|++++|.+.....+..+++|
T Consensus 43 ~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L 117 (198)
T 1ds9_A 43 TLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASLSGIEKLVNL 117 (198)
T ss_dssp HHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHHCSEEEEEEEECCCHHHHHHHHHS
T ss_pred HHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcCCcCCEEECcCCcCCcCCccccCCCC
Confidence 4544 7889999998888875 44 7788888999999988887 5554 345567899999998888876667788899
Q ss_pred ceeecccCccCccch-hhhhcCCCCcEEEccCCcccccCCc----------ccCCCCCCcEEeCCCCcCCc
Q 042919 322 CWLYLNNNHFSGKIQ-DGLSKATSLLELDLSNNMLYGQIPP----------WFGNLSGLQFLDISENQLCG 381 (428)
Q Consensus 322 ~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~----------~~~~~~~L~~L~L~~~~~~~ 381 (428)
++|++++|.+++... ..+..+++|+.|++++|.+.+..|. .+..+++|+.|+ +++++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999998875443 5688899999999999988655443 267788888886 666653
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=4.6e-11 Score=96.50 Aligned_cols=106 Identities=25% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEcc
Q 042919 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 351 (428)
Q Consensus 274 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 351 (428)
.++++++++.+. .+|... .+.++.|++++|.+..... +..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467888887776 565433 3678888888888776543 7778888888888888877666677788888888888
Q ss_pred CCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919 352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383 (428)
Q Consensus 352 ~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 383 (428)
+|.++...+..+..+++|+.|+|++|++....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 88887555556778888888888888776443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=9.9e-11 Score=94.84 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=84.3
Q ss_pred CCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEcc
Q 042919 274 LESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDLS 351 (428)
Q Consensus 274 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 351 (428)
-+.++++++.+. .+|... .+.|+.|++++|.+..... +..+++|++|++++|.++......|..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888876 666543 3788899999998887644 7788899999999998887766777888899999999
Q ss_pred CCcccccCCcccCCCCCCcEEeCCCCcCCcCC
Q 042919 352 NNMLYGQIPPWFGNLSGLQFLDISENQLCGSV 383 (428)
Q Consensus 352 ~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 383 (428)
+|.++...+..+..+++|+.|+|++|++....
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99888555556888899999999999887543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.12 E-value=7.3e-11 Score=106.84 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=85.9
Q ss_pred CCCccEEecCCCcccc-CC---C---chhhhcCCCCcEEEccCCCCCC---------CCCccccCCCCCCEEECcCcccC
Q 042919 222 KHDLLRLDISHNKFSC-QL---P---GNMGKILPELLSLNLSENGFEG---------RIPSSMSEMKRLESLDLSSNNFS 285 (428)
Q Consensus 222 ~~~L~~L~l~~~~~~~-~~---~---~~~~~~~~~L~~L~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~ 285 (428)
...++.|.+..+...+ .. . ......+++|+.|.+....... .+...+..+|+|++|.++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3456677777554321 11 0 0112236788888876532210 12233455667777777665211
Q ss_pred CCCchhhhcCCCCCCEEeCCCcccccccc----cCCCCCcceeecccC--cc-Cc----cchhhh--hcCCCCcEEEccC
Q 042919 286 GELPRQFLSGCFSLSFLSLSDNHLQGEVV----FPNSTNLCWLYLNNN--HF-SG----KIQDGL--SKATSLLELDLSN 352 (428)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~--~~-~~----~~~~~l--~~~~~L~~L~l~~ 352 (428)
.++. + ..++|+.|++..|.+..... ...+|+|++|+|+.+ .. .+ .....+ ..+++|+.|++.+
T Consensus 186 -~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 -SIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp -BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred -eecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 1221 1 25666666666665543322 235666666666421 11 10 001112 1356666666666
Q ss_pred CcccccCCccc---CCCCCCcEEeCCCCcCCcCCCCcc-----ccccCceEEccCCcCCc
Q 042919 353 NMLYGQIPPWF---GNLSGLQFLDISENQLCGSVPSSF-----NLSSLRRLYMHMNAFNG 404 (428)
Q Consensus 353 ~~i~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~ 404 (428)
|.+++..+..+ ..+++|+.|+|++|.+.+.....+ .+++|+.|++++|.++.
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 66543222111 135566666666666554322111 35666666666666553
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=6.4e-10 Score=101.09 Aligned_cols=102 Identities=24% Similarity=0.204 Sum_probs=68.3
Q ss_pred EeCCCc-ccccccccCCCCCcceeeccc-CccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcC
Q 042919 302 LSLSDN-HLQGEVVFPNSTNLCWLYLNN-NHFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQL 379 (428)
Q Consensus 302 L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~ 379 (428)
++.+++ .+...+.+..+++|++|+|++ |.+....+..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 455555 555443456666777777775 777666666677777777777777777766666777777777777777777
Q ss_pred CcCCCCccccccCceEEccCCcCC
Q 042919 380 CGSVPSSFNLSSLRRLYMHMNAFN 403 (428)
Q Consensus 380 ~~~~~~~~~~~~L~~L~l~~~~~~ 403 (428)
++..+..+....|+.|++.+|++.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCcc
Confidence 765555553233777777777765
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=3.2e-09 Score=96.44 Aligned_cols=104 Identities=26% Similarity=0.199 Sum_probs=87.0
Q ss_pred CEEECcCc-ccCCCCchhhhcCCCCCCEEeCCC-cccccccc--cCCCCCcceeecccCccCccchhhhhcCCCCcEEEc
Q 042919 275 ESLDLSSN-NFSGELPRQFLSGCFSLSFLSLSD-NHLQGEVV--FPNSTNLCWLYLNNNHFSGKIQDGLSKATSLLELDL 350 (428)
Q Consensus 275 ~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 350 (428)
..++++++ .+. .+|. +..+.+|+.|++++ |.+..... +..+++|+.|+|++|.+.+..+..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688777 676 6776 77888999999996 88887654 889999999999999999888888999999999999
Q ss_pred cCCcccccCCcccCCCCCCcEEeCCCCcCCcC
Q 042919 351 SNNMLYGQIPPWFGNLSGLQFLDISENQLCGS 382 (428)
Q Consensus 351 ~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~~~ 382 (428)
++|.++...+..+..++ |+.|+|++|++...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999865555666665 99999999998743
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=3e-09 Score=96.24 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=88.3
Q ss_pred hHhhhCCCccEEEccCCcCCC--------CCchhhhhcCCCCCEEEecCCccCCcccCCCCCCCccEEecCCCccccCCC
Q 042919 169 SILLQQLDLRFIDLSHNKLQG--------IFPSWLLQNNTKLDTLYLLNNSLSGNFQLPSSKHDLLRLDISHNKFSCQLP 240 (428)
Q Consensus 169 ~~~~~~~~L~~L~l~~~~~~~--------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 240 (428)
....++++|+.|.+.+..... .....++..+++|+.|.++++....... ...++|+.|++..+.+.....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHH
Confidence 335567788888886543211 1122344567778888877652111111 124566666665555433222
Q ss_pred chhhh-cCCCCcEEEccCC--C-CCCCCCccccCCCCCCEEECcCcccCCCCchhhhcCCCCCCEEeCCCcccccccc--
Q 042919 241 GNMGK-ILPELLSLNLSEN--G-FEGRIPSSMSEMKRLESLDLSSNNFSGELPRQFLSGCFSLSFLSLSDNHLQGEVV-- 314 (428)
Q Consensus 241 ~~~~~-~~~~L~~L~l~~~--~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-- 314 (428)
..++. .+|+|+.|++..+ . ..+.....+. +......+++|+.|++.+|.+.+...
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-------------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-------------------PLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-------------------GGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHH-------------------HHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 22221 2555666655321 0 0000000000 00000124555555555555443211
Q ss_pred ---cCCCCCcceeecccCccCccchhh----hhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCc
Q 042919 315 ---FPNSTNLCWLYLNNNHFSGKIQDG----LSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQ 378 (428)
Q Consensus 315 ---~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~ 378 (428)
...+++|++|+++.|.+.+..... +.++++|+.|++++|.+++.....+...- ...+++++++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 124566777777766665543222 23457777777777776644333333200 2446666654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=1.3e-09 Score=89.14 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=61.3
Q ss_pred hhcCCCCCCEEeCCCc-ccccccc------cCCCCCcceeecccCccCccch----hhhhcCCCCcEEEccCCccccc--
Q 042919 292 FLSGCFSLSFLSLSDN-HLQGEVV------FPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSNNMLYGQ-- 358 (428)
Q Consensus 292 ~~~~~~~L~~L~l~~~-~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~-- 358 (428)
.+...+.|++|++++| .+.+... +...++|++|++++|.+.+... ..+...++|++|+|++|.|++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445667777777776 6654322 4555667777777776654332 2334446666666666666532
Q ss_pred --CCcccCCCCCCcEEeC--CCCcCCcCCCCcc-----ccccCceEEccCCcC
Q 042919 359 --IPPWFGNLSGLQFLDI--SENQLCGSVPSSF-----NLSSLRRLYMHMNAF 402 (428)
Q Consensus 359 --~~~~~~~~~~L~~L~L--~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~ 402 (428)
+...+...++|+.|+| ++|.+.+.....+ ..++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2334455556666666 5565554332222 335555555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=4.6e-09 Score=85.86 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccc----hhhhhcCCCCcEEEc--cCCccccc----C
Q 042919 296 CFSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKI----QDGLSKATSLLELDL--SNNMLYGQ----I 359 (428)
Q Consensus 296 ~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l--~~~~i~~~----~ 359 (428)
.+.|++|++++|.+.+... +...++|++|++++|.+.+.. ..++...++|++|++ ++|.+++. +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 3455555555555443221 233344555555555544332 223334445555555 44444432 1
Q ss_pred CcccCCCCCCcEEeCCCCcC
Q 042919 360 PPWFGNLSGLQFLDISENQL 379 (428)
Q Consensus 360 ~~~~~~~~~L~~L~L~~~~~ 379 (428)
...+...++|++|+|++|.+
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCCCcCEEeccCCCC
Confidence 22233334555555555544
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=4.1e-09 Score=83.80 Aligned_cols=84 Identities=7% Similarity=0.020 Sum_probs=62.8
Q ss_pred CCcceeecccCccCccchhhhhcCCCCcEEEccCCc-ccccCCcccCCC----CCCcEEeCCCCc-CCcCCCCcc-cccc
Q 042919 319 TNLCWLYLNNNHFSGKIQDGLSKATSLLELDLSNNM-LYGQIPPWFGNL----SGLQFLDISENQ-LCGSVPSSF-NLSS 391 (428)
Q Consensus 319 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~----~~L~~L~L~~~~-~~~~~~~~~-~~~~ 391 (428)
..|++|++++|.+++.....+..+++|++|+|++|. +++.....++.+ ++|+.|+|++|. +++.....+ .+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888887777778888888888888884 776555555553 468888888884 776555555 6788
Q ss_pred CceEEccCCcC
Q 042919 392 LRRLYMHMNAF 402 (428)
Q Consensus 392 L~~L~l~~~~~ 402 (428)
|++|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888888863
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=2.1e-07 Score=73.94 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=66.2
Q ss_pred CCCCcEEeccCCcCCCCchHhhhcCCCCCEEEccCCc-cCcchhhhhccC----CCCcEEeCCCCc-cCCccccccccCC
Q 042919 53 LKNLVELDLSKNNLYGHLSPCLSNLTHIKVLDLSSNQ-LTGNLQSVIANI----KSLEYLSLDDNN-FEGLFSFNSLKNH 126 (428)
Q Consensus 53 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~ 126 (428)
-.+|++|++++|.+++.....+..+++|++|+|++|. ++......++.+ ++|++|++++|. +++. ....+.++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcC
Confidence 3579999999999987777778899999999999994 776666666664 479999999985 5544 33566778
Q ss_pred CCCcEEEccCCc
Q 042919 127 SKLQVFKLSNSL 138 (428)
Q Consensus 127 ~~L~~L~l~~~~ 138 (428)
++|++|++++|.
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 888888887764
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.1e-07 Score=79.79 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=60.3
Q ss_pred hcCCCCcEEEccCCcccc--cCCcccCCCCCCcEEeCCCCcCCcCCCCccccc--cCceEEccCCcCCccCC-------c
Q 042919 340 SKATSLLELDLSNNMLYG--QIPPWFGNLSGLQFLDISENQLCGSVPSSFNLS--SLRRLYMHMNAFNGSIP-------G 408 (428)
Q Consensus 340 ~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~-------~ 408 (428)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|++.+... .-.+. +|++|++++|++.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 567889999999998875 344566788999999999998886521 11233 89999999999876554 2
Q ss_pred ccccCCCCCEEE
Q 042919 409 ALRRSLSLTVLD 420 (428)
Q Consensus 409 ~~~~~~~L~~L~ 420 (428)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467889999887
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=7e-06 Score=70.37 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=34.2
Q ss_pred cCCCCCEEEccCCccCc--chhhhhccCCCCcEEeCCCCccCCccccccccCCCCCcEEEccCCccc
Q 042919 76 NLTHIKVLDLSSNQLTG--NLQSVIANIKSLEYLSLDDNNFEGLFSFNSLKNHSKLQVFKLSNSLVK 140 (428)
Q Consensus 76 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 140 (428)
++++|+.|+|++|.+.. ..+..+..+++|+.|++++|.+.++.....+..+ +|+.|.+++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 45566666666665553 2234445566666666666665555333333333 5666666655543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.84 E-value=5e-06 Score=67.38 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCCCCCEEeCCCc-ccccccc------cCCCCCcceeecccCccCccch----hhhhcCCCCcEEEccCCccccc----C
Q 042919 295 GCFSLSFLSLSDN-HLQGEVV------FPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSNNMLYGQ----I 359 (428)
Q Consensus 295 ~~~~L~~L~l~~~-~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~----~ 359 (428)
.-+.|+.|+++++ .+.+... +..-+.|++|+|++|.+.+... +++...++|++|+|++|.|++. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456666666653 5443221 4444556666666665554322 2333445566666666655432 2
Q ss_pred CcccCCCCCCcEEeCCC
Q 042919 360 PPWFGNLSGLQFLDISE 376 (428)
Q Consensus 360 ~~~~~~~~~L~~L~L~~ 376 (428)
...+...+.|+.|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22333444555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.74 E-value=1.9e-05 Score=63.95 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCCCEEeCCCcccccccc------cCCCCCcceeecccCccCccch----hhhhcCCCCcEEEccC
Q 042919 297 FSLSFLSLSDNHLQGEVV------FPNSTNLCWLYLNNNHFSGKIQ----DGLSKATSLLELDLSN 352 (428)
Q Consensus 297 ~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~ 352 (428)
..|+.|++++|.+.+..+ +..-+.|++|+|++|.+.+... +++...++|++|+|++
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 345555555554443322 2233445555555554443322 2233334455555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0027 Score=47.81 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=38.9
Q ss_pred cEEEccCCccc-ccCCcccCCCCCCcEEeCCCCcCCcCCCCcc-ccccCceEEccCCcCC
Q 042919 346 LELDLSNNMLY-GQIPPWFGNLSGLQFLDISENQLCGSVPSSF-NLSSLRRLYMHMNAFN 403 (428)
Q Consensus 346 ~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 403 (428)
..++.++++++ ..+|..+. ++|+.|+|++|+++......+ .+++|+.|+|.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 24453332 368888888888887666666 6778888888888775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.27 E-value=0.011 Score=44.53 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=42.6
Q ss_pred ceeecccCccC-ccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCCcCC
Q 042919 322 CWLYLNNNHFS-GKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISENQLC 380 (428)
Q Consensus 322 ~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~~~~ 380 (428)
+.++.++..++ ..++..+ .++|+.|+|++|.|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666776665 1233222 457999999999999666777889999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.29 E-value=0.48 Score=33.38 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=22.8
Q ss_pred CCCCchHhhhcCCCCCEEEccCCccCcchhhhhccCCCCcEEeCCC
Q 042919 66 LYGHLSPCLSNLTHIKVLDLSSNQLTGNLQSVIANIKSLEYLSLDD 111 (428)
Q Consensus 66 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 111 (428)
++.+...+|.+|..|+.+.+... ++.....+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344445555555555555543 3333444555555555555544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.24 E-value=1.6 Score=30.69 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=28.7
Q ss_pred ccCccchhhhhcCCCCcEEEccCCcccccCCcccCCCCCCcEEeCCCC
Q 042919 330 HFSGKIQDGLSKATSLLELDLSNNMLYGQIPPWFGNLSGLQFLDISEN 377 (428)
Q Consensus 330 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~~ 377 (428)
.++.....+|.+|.+|+.+.|..+ ++.....+|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455566677777777776654 33244556777777777776554
Done!