BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042924
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
+D GWTP+H AAY+G+ V +LL+ + AD +T LHLAA +G +VE ++
Sbjct: 43 SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN--ADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 78 SKNPECYELVDNRGWNFLHYA 98
KN D+ G+ LH A
Sbjct: 101 -KNGADVNANDHNGFTPLHLA 120
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAII 77
D GWTP+H AA++G+ V +LL ++ +++ KD +T LHLAA +G IVE ++
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL 100
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
KN D+ G+ LH A +E + LL+N
Sbjct: 101 -KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLET 44
+D +G+TP+H AA G+ V +LL+
Sbjct: 109 SDSHGFTPLHLAAKRGHLEIVEVLLKN 135
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 20 QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK 79
+ G+TP+H AA YG LLLE D + N A K+ +T LH+A + IV+ ++ +
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPR 201
Query: 80 NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA------KGNTPLH 133
+ N G+ LH A +VE +ARSL+ G + +G TPLH
Sbjct: 202 GGSPHSPAWN-GYTPLHIAAKQNQVE----------VARSLLQYGGSANAESVQGVTPLH 250
Query: 134 VLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI 168
LAA + V L+ QAN + NK ++ H+
Sbjct: 251 -LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 23 WTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE 82
TP+H AA G+ V LLLE + + N+A T LH+AA +G V A++ K
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNAN-PNLA-TTAGHTPLHIAAREGHVETVLALLEKE-A 137
Query: 83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNE 142
+ +G+ LH A +V LLE + + N G TPLHV A+ N
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERD----AHPNAAGKNGLTPLHV--AVHHNN 191
Query: 143 FDV 145
D+
Sbjct: 192 LDI 194
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAI 76
T + G+TP+H A++YGN V LL Q +++ K + + LH AA +G IV +
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLL---QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 77 I 77
+
Sbjct: 364 L 364
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 23 WTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPE 82
TP+H A++ G+ V LL+ + AS + T LH+AA G + + ++ +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
+ LH A + LLENN + N G+TPLH+ A
Sbjct: 73 VNAKAKDD-QTPLHCAARIGHTNMVKLLLENN----ANPNLATTAGHTPLHIAA 121
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
+D G TP+HYAA G+ V LL+ + + N D D + T LH AA +G IV+ +I
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGR-TPLHYAAKEGHKEIVKLLI 90
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
SK + D+ G LHYA E + L+ + +N D+ G TPL LA
Sbjct: 91 SKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKG----ADVNTSDSDGRTPLD-LAR 144
Query: 138 IRPNEFDVDLVRK 150
NE V L+ K
Sbjct: 145 EHGNEEIVKLLEK 157
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP 81
G TP+H AA G+ V LLLE N DK+ + T LHLAA G +V+ ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
+ D G LH A + +E + LLE A + +N D G TPLH+ A
Sbjct: 60 DVNA-KDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 109
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G TP+H AA G+ V LLLE N DK+ + T LHLAA G +V+ ++
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGR-TPLHLAARNGHLEVVKLLLE 89
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
+ D G LH A + +E + LLE
Sbjct: 90 AGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G+TP+H AA G+ V +LL+ N DKD T LHLAA +G IVE ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLEIVEVLLK 89
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
+ D G+ LH A +E + LL+ A + +N D G TP + AI
Sbjct: 90 AGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTPFDL--AI 142
Query: 139 RPNEFDV 145
R D+
Sbjct: 143 REGHEDI 149
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
+D G TP+HYAA G+ V LLL + + N D D + T LH AA G IV+ ++
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGR-TPLHYAAENGHKEIVKLLL 90
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
SK + D+ G LHYA + E + LL + N D+ G TPL LA
Sbjct: 91 SKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKG----ADPNTSDSDGRTPLD-LAR 144
Query: 138 IRPNEFDVDLVRK 150
NE V L+ K
Sbjct: 145 EHGNEEIVKLLEK 157
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
TD G TP+H AA G V +LL+ D +AS+ A +T LHLAA G IVE
Sbjct: 35 TDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA----GITPLHLAAYDGHLEIVEV 90
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
++ + D GW LH A +S ++E + LL++ + +N DA G T +
Sbjct: 91 LLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKHG----ADVNAQDALGLTAFDI 144
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 52 ADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
A D +T LHLAA G IVE ++ KN D+ G LH A +E + LL
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 112 ENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FN 170
++ + +N D G TPLH LAA+ V+++ K A+ +A + ++ I N
Sbjct: 93 KHG----ADVNAYDRAGWTPLH-LAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISIN 147
Query: 171 YGYPELKEEIQ 181
G +L E +Q
Sbjct: 148 QGQEDLAEILQ 158
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G+TP+H AA G+ V +LL+ N DKD T LHLAA +G IVE ++
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLEIVEVLLK 89
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTP 131
+ D G+ LH A +E + LL+ A + +N D G TP
Sbjct: 90 AGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTP 137
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
+D G TP+H+AA G+ V LL+ + + N D D + T LH AA G +V+ +I
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGR-TPLHHAAENGHKEVVKLLI 90
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
SK + D+ G LH+A + E + L+ + +N D+ G TPL LA
Sbjct: 91 SKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKG----ADVNTSDSDGRTPLD-LAR 144
Query: 138 IRPNEFDVDLVRK 150
NE V L+ K
Sbjct: 145 EHGNEEVVKLLEK 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
+D G TP+H AA G+ V LLL + + N D D K T LHLAA G +V+ ++
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGK-TPLHLAAENGHKEVVKLLL 90
Query: 78 SK--NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
S+ +P D+ G LH A + E + LL + N D+ G TPL L
Sbjct: 91 SQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQG----ADPNTSDSDGRTPLD-L 142
Query: 136 AAIRPNEFDVDLVRK 150
A NE V L+ K
Sbjct: 143 AREHGNEEVVKLLEK 157
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
TDQ T +H+A G+ V LL Q + DKD + LH+AA G IV+A+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
+ K + V+ G LHYA R E LLE NP A+ + ++ AKGN
Sbjct: 93 LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151
Query: 130 TPL-HVL 135
+ H+L
Sbjct: 152 LKMIHIL 158
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII- 77
D GW+P+H AA G V LL + A A T LH AA K I ++
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 78 -SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
NP+ D+ +H A ++ + LL ++ N D +GNTPLH+
Sbjct: 128 GGANPDAK---DHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNTPLHL 178
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
TDQ T +H+A G+ V LL Q + DKD + LH+AA G IV+A+
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 93
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
+ K + V+ G LHYA R E LLE NP A+ + ++ AKGN
Sbjct: 94 LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 152
Query: 130 TPL-HVL 135
+ H+L
Sbjct: 153 LKMIHIL 159
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII- 77
D GW+P+H AA G V LL + A A T LH AA K I ++
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 128
Query: 78 -SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
NP+ D+ +H A ++ + LL ++ N D +GNTPLH+
Sbjct: 129 GGANPDAK---DHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNTPLHL 179
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D GWTP H A GN V L + ++ +T LHLA GK + + +I
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
+N + D LH A S KL LL L +S +N D +G TPL A
Sbjct: 128 ENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 RPNEFDVDLVRKTQANYDAVNKQ 161
+ V LV K A YD V+ +
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNK 207
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDARIVEAII 77
D++ P+H AA G+ + LL +SA N DK H LA G GDA ++ ++
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 78 SKNPECYELVDNRG 91
K Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 61 LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL 120
LH A + + V+ ++ P D G LH++V SF+ ++T+ L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNL 64
Query: 121 INEGDAKGNTPLHVLAAIRPNEFDVDLV-RKTQANYDAVNKQIVSVRHI 168
+ D G TP H+ ++ E L R + + + + Q V+ H+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D GWTP H A GN V L + ++ +T LHLA GK + + +I
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
+N + D LH A S KL LL L +S +N D +G TPL A
Sbjct: 128 ENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 RPNEFDVDLVRKTQANYDAVNKQ 161
+ V LV K A YD V+ +
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNK 207
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDARIVEAII 77
D++ P+H AA G+ + LL +SA N DK H LA G GDA ++ ++
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 78 SKNPECYELVDNRG 91
K Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 61 LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL 120
LH A + + V+ ++ P D G LH++V SF+ ++T+ L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNL 64
Query: 121 INEGDAKGNTPLHVLAAIRPNEFDVDLV-RKTQANYDAVNKQIVSVRHI 168
+ D G TP H+ ++ E L R + + + + Q V+ H+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D GWTP H A GN V L + ++ +T LHLA GK + + +I
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
+N + D LH A S KL LL L +S +N D +G TPL A
Sbjct: 128 ENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHALAE 184
Query: 139 RPNEFDVDLVRKTQANYDAVNKQ 161
+ V LV K A YD V+ +
Sbjct: 185 GHGDAAVLLVEKYGAEYDLVDNK 207
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGKGDARIVEAII 77
D++ P+H AA G+ + LL +SA N DK H LA G GDA ++ ++
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 78 SKNPECYELVDNRG 91
K Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 61 LHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSL 120
LH A + + V+ ++ P D G LH++V SF+ ++T+ L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNL 64
Query: 121 INEGDAKGNTPLHVLAAIRPNEFDVDLV-RKTQANYDAVNKQIVSVRHI 168
+ D G TP H+ ++ E L R + + + + Q V+ H+
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
T Q G +P+H AA +G + LLL+ +A A + LHLA +G ++V+ ++
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAG--ARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
N + + D G L YA E + LL++ + IN + KGNT LH A
Sbjct: 140 DSNAKPNK-KDLSGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALHE-AV 193
Query: 138 IRPNEFDVDLVRKTQANYDAVNKQ 161
I + F V+L+ A+ +NK+
Sbjct: 194 IEKHVFVVELLLLHGASVQVLNKR 217
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD G +P+H AA YG++ T +LL S DR T LH+AA +G A IVE ++
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLL 87
Query: 78 SKNPE 82
+
Sbjct: 88 KHGAD 92
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAIISKNPE 82
TP+H AA G+ V +LL + +++ KD KMTALH A +VE +I +
Sbjct: 69 TPLHMAASEGHANIVEVLL---KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Query: 83 CY 84
+
Sbjct: 126 VH 127
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
TDQ T +H+A G+ V LL Q + DKD + LH+AA G IV+A+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
+ K V+ G LHYA R E LLE NP A+ + ++ AKGN
Sbjct: 93 LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 130 TPL-HVL 135
+ H+L
Sbjct: 152 LKMVHIL 158
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII- 77
D GW+P+H AA G V LL + A A T LH AA K I ++
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 78 -SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
NP+ + D +H A ++ + LL ++ N D +GNTPLH+
Sbjct: 128 GGANPDAKDHYDATA---MHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHL 178
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAI 76
TDQ T +H+A G+ V LL Q + DKD + LH+AA G IV+A+
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLAR-----SLINEGDAKGN 129
+ K V+ G LHYA R E LLE NP A+ + ++ AKGN
Sbjct: 93 LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 130 TPL-HVL 135
+ H+L
Sbjct: 152 LKMVHIL 158
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII- 77
D GW+P+H AA G V LL + A A T LH AA K I ++
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLV--KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Query: 78 -SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHV 134
NP+ + D +H A ++ + LL ++ N D +GNTPLH+
Sbjct: 128 GGANPDAKDHYDATA---MHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHL 178
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLET--DQSASNIADKDRKMTALHLAAGKGDARIVEA 75
TD G+TP+H AA G+ V +LL+ D +AS++ +T LHLAA G IVE
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT----GITPLHLAAATGHLEIVEV 98
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
++ + DN G LH A +E + LL++
Sbjct: 99 LLKHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D GWTP+H AAY+G+ V +LL+ + A T LHLAA G IVE ++
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN--AYDTLGSTPLHLAAHFGHLEIVEVLL 100
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
KN D+ G LH A +E + LL+
Sbjct: 101 -KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
I+ N D GW LH A +E + LL+N + +N D G+TPLH+
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG----ADVNAYDTLGSTPLHLA 87
Query: 136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLSKDV 187
A E V+++ K A+ +A + ++ H+ N G+ E+ E + K DV
Sbjct: 88 AHFGHLEI-VEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G+TP+H AA G+ V +LL+ N DKD T LHLAA +G IVE ++
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKD-GYTPLHLAAREGHLEIVEVLLK 101
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
+ D G+ LH A +E + LL+
Sbjct: 102 AGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D GWTP+H AA+ G+ V +LL+ + + MT L LAA G IVE ++
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV--DHAGMTPLRLAALFGHLEIVEVLL- 100
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
KN D G LH A + +E + LL+N
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 59 TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR 118
T LHLAA G IVE ++ KN VD+ G L A + +E + LL+N
Sbjct: 49 TPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG---- 103
Query: 119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FNYGYPELK 177
+ +N D +G+TPLH+ A E V+++ K A+ +A +K + I + G +L
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEI-VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 178 EEIQKLS 184
E +QKL+
Sbjct: 163 EILQKLN 169
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
+D +G+TP+H AAY+G+ V +LL+ N D D MT LHLAA G IVE ++
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-NAMDSD-GMTPLHLAAKWGYLEIVEVLL 133
Query: 78 SKNPEC 83
+
Sbjct: 134 KHGADV 139
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
D G TP+H AAY G+ V +LL+ D AS++ T LHLAA G IVE
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDV----FGYTPLHLAAYWGHLEIVEV 98
Query: 76 IISKNPECYELVDNRGWNFLHYA 98
++ KN +D+ G LH A
Sbjct: 99 LL-KNGADVNAMDSDGMTPLHLA 120
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 9/157 (5%)
Query: 29 AAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVD 88
AA G V +L+ A A D+ T LHLAA G IVE ++ + D
Sbjct: 21 AARAGQDDEVRILMAN--GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARD 77
Query: 89 NRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLV 148
GW LH A + +E + LL+ + +N DA G TPLH LAA R + V+++
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYG----ADVNAQDAYGLTPLH-LAADRGHLEIVEVL 132
Query: 149 RKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLS 184
K A+ +A +K + I + G +L E +QKL+
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAII 77
D GWTP+H AA G+ V +LL + +++ +D +T LHLAA +G IVE ++
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLL---KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 78 SKNPEC 83
+
Sbjct: 134 KHGADV 139
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
TD G TP+H AA YG+ V +LL+ D +A +I T LHLAA G IVE
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS----TPLHLAALIGHLEIVEV 98
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
++ + VD G LH A + +E + LL++
Sbjct: 99 LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
I+ N D G LH A +E + LL++ + +N D G+TPLH+
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG----ADVNAIDIXGSTPLHLA 87
Query: 136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN-YGYPELKEEIQKLSKDV 187
A I E V+++ K A+ +AV+ + H+ G+ E+ E + K DV
Sbjct: 88 ALIGHLEI-VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
TD G TP+H AA YG+ V +LL+ D +A +I T LHLAA G IVE
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS----TPLHLAALIGHLEIVEV 98
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
++ + VD G LH A + +E + LL++
Sbjct: 99 LLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
I+ N D G LH A +E + LL++ + +N D G+TPLH+
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG----ADVNAIDIMGSTPLHLA 87
Query: 136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHIFN-YGYPELKEEIQKLSKDV 187
A I E V+++ K A+ +AV+ + H+ G+ E+ E + K DV
Sbjct: 88 ALIGHLEI-VEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADV 139
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEA 75
+D+ GWTP+H AAY G+ V +LL+ D +A + + T LHLAA G IVE
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDY----QGYTPLHLAAEDGHLEIVEV 131
Query: 76 IIS 78
++
Sbjct: 132 LLK 134
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 58 MTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLA 117
+T LHL G I+E ++ + D GW LH A +E + LL+
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYG--- 103
Query: 118 RSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FNYGYPEL 176
+ +N D +G TPLH+ A E V+++ K A+ +A +K + I + G +L
Sbjct: 104 -ADVNAMDYQGYTPLHLAAEDGHLEI-VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 177 KEEIQKLS 184
E +QKL+
Sbjct: 162 AEILQKLN 169
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 52 ADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLL 111
A+ D T LHLAA KG IVE ++ + D G LH A + +E + LL
Sbjct: 42 AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 112 ENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FN 170
+N + +N D G TPLH+ A E V+++ K A+ +A +K + I +
Sbjct: 101 KNG----ADVNATDTYGFTPLHLAADAGHLEI-VEVLLKYGADVNAQDKFGKTAFDISID 155
Query: 171 YGYPELKEEIQKLS 184
G +L E +QKL+
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D G TP+H AA G+ V +LL+ N ADK T LHLAA G IVE ++
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADK-MGDTPLHLAALYGHLEIVEVLL- 100
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
KN D G+ LH A + +E + LL+
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D+ G TP+H AA YG+ V +LL+ A A T LHLAA G IVE ++
Sbjct: 76 ADKMGDTPLHLAALYGHLEIVEVLLKN--GADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE 43
TD YG+TP+H AA G+ V +LL+
Sbjct: 109 TDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP 81
G TP+H AA G+ V LLLE N DK+ + T LHLAA G +V+ ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 82 ECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
+ D G LH A + +E + LLE
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D+ G TP+H AA G+ V LLLE N DK+ + T LHLAA G +V+ ++
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGR-TPLHLAARNGHLEVVKLLL 88
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 59 TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR 118
T LHLAA G +V+ ++ + D G LH A + +E + LLE A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE----AG 58
Query: 119 SLINEGDAKGNTPLHVLA 136
+ +N D G TPLH+ A
Sbjct: 59 ADVNAKDKNGRTPLHLAA 76
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD+ G+TP+ +AA +G V LL+ + + + K R+ +AL LA KG IV+ ++
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGYTDIVKMLL 87
Query: 78 SKNPECYELVDNRGWNF---LHYAVVSFRVEKLTNLLEN 113
+C V+ WN L YAV V+ + LLE+
Sbjct: 88 ----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 122
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD+ G+TP+ +AA +G V LL+ + + + K R+ +AL LA KG IV+ ++
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGYTDIVKMLL 89
Query: 78 SKNPECYELVDNRGWNF---LHYAVVSFRVEKLTNLLEN 113
+C V+ WN L YAV V+ + LLE+
Sbjct: 90 ----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 124
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD+ G+TP+ +AA +G V LL+ + + + K R+ +AL LA KG IV+ ++
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGYTDIVKMLL 105
Query: 78 SKNPECYELVDNRGWNF---LHYAVVSFRVEKLTNLLEN 113
+C V+ WN L YAV V+ + LLE+
Sbjct: 106 ----DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES 140
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D G T +H AA G+Y V LL Q N D D T + A +V+ ++S
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-DGGWTPMIWATEYKHVDLVKLLLS 132
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
K + + DN LH+A S V+ LL A+ ++ + G++PLH+ A
Sbjct: 133 KGSD-INIRDNEENICLHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHI--AA 185
Query: 139 RPNEFDV 145
R N +D
Sbjct: 186 RENRYDC 192
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAIISKNPE 82
TP+ AA + V L+ ++ + + KD + T LHLAA KG +V+ ++S
Sbjct: 46 TPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
Query: 83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLH 133
D+ GW + +A V+ + LL S IN D + N LH
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG----SDINIRDNEENICLH 149
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKD-RKMTALHLAAGKGDARIVEAII 77
D YG TP+H AA G+ V +LL ++ +++ D T LHLAA +G IVE ++
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLL 100
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
+ D G LH A + +E + LL+
Sbjct: 101 KYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 59 TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLAR 118
T LHLAA G IVE ++ KN +D G LH A +E + LL+
Sbjct: 49 TPLHLAARVGHLEIVEVLL-KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG---- 103
Query: 119 SLINEGDAKGNTPLHVLAAIRPNEFDVDLVRKTQANYDAVNK 160
+ +N D G+TPLH+ A E V+++ K A+ +A +K
Sbjct: 104 ADVNADDTIGSTPLHLAADTGHLEI-VEVLLKYGADVNAQDK 144
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
D YG+TP+H AA G+ V +LL+ D +A ++ T LHLAA +G IVE +
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----TPLHLAADEGHLEIVEVL 132
Query: 77 I 77
+
Sbjct: 133 L 133
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
D G TP+H AA G+ V +LL+ D A+++ T LHLAA G IVE +
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV----YGFTPLHLAAMTGHLEIVEVL 99
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
+ + D G LH A +E + LL+
Sbjct: 100 LKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
I+ N VDN G LH A VS +E + LL++ + ++ D G TPLH L
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG----ADVDAADVYGFTPLH-L 86
Query: 136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLSKDV 187
AA+ + V+++ K A+ +A + + H+ + G+ E+ E + K DV
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G TP+H AA G+ V +LL+ A A+ + +T LHLAA +G IVE ++
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKY--GADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 79 KNPEC 83
+
Sbjct: 102 HGADV 106
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD G TP+H AA G+ V +LL+ A A + T LHLAA G IVE ++
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLK--YGADVNAWDNYGATPLHLAADNGHLEIVEVLL 100
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
+ D G+ LH A +E + LL+
Sbjct: 101 KHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D+ G+ IH AA G T+ LLE Q+ NI D + + LHLAA +G R+VE ++
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 80 NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA-- 137
NP+ L D G+ +H A + +++ L LLE ++ +N D +GN PLH+ A
Sbjct: 62 NPD---LKDRTGFAVIHDAARAGQLDTLQTLLE----FQADVNIEDNEGNLPLHLAAKEG 114
Query: 138 -IRPNEFDVDLVRKTQANYDAVNKQ 161
+R EF LV+ T +N N +
Sbjct: 115 HLRVVEF---LVKHTASNVGHRNHK 136
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAIISKNPE 82
TP+H+AA Y V LL Q +++ KD+ + LH A G + E ++ K+
Sbjct: 48 TPLHFAAGYNRVSVVEYLL---QHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 103
Query: 83 CYELVDNRGWNF--LHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHVLAAI 138
+ D W F LH A + E LL++ +P + + GNTPL + +
Sbjct: 104 VVNVADL--WKFTPLHEAAAKGKYEICKLLLQHGADPTKK------NRDGNTPLDL---V 152
Query: 139 RPNEFDV-DLVRKTQANYDAVNK 160
+ + D+ DL+R A DA K
Sbjct: 153 KDGDTDIQDLLRGDAALLDAAKK 175
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G P+H A YG+Y LL++ + N+AD K T LH AA KG I + ++
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQ 133
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D+ G+ IH AA G T+ LLE +Q+ NI D + + LHLAA +G R+VE ++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 80 NPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA-- 137
NP+ L D G+ +H A + ++ L LLEN ++ +N D +GN PLH+ A
Sbjct: 62 NPD---LKDRTGFAVIHDAARAGFLDTLQTLLEN----QADVNIEDNEGNLPLHLAAKEG 114
Query: 138 -IRPNEFDVDLVRKTQANYDAVNKQ 161
+R EF LV+ T +N N +
Sbjct: 115 HLRVVEF---LVKHTASNVGHRNHK 136
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D YG TP+H AA G+ V +LL + + T LHLAA G IVE ++
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV--DTNGTTPLHLAASLGHLEIVEVLLK 89
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 88 DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDL 147
D+ G LH A +E + LL N + +N D G TPLH+ A++ E V++
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNG----ADVNAVDTNGTTPLHLAASLGHLEI-VEV 86
Query: 148 VRKTQANYDAVNKQIVSVRHIFNY-GYPELKEEIQKLSKDV 187
+ K A+ +A + ++ ++ Y G+ E+ E + K DV
Sbjct: 87 LLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADV 127
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK-MTALHLAAGKGDARIVEAII 77
D G TP+H AA G+ V +LL + +++ KD +T L+LAA G IVE ++
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLL---KYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 78 SKNPEC 83
+
Sbjct: 122 KHGADV 127
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G+TP+ +A+ +G TV LLE + +I K+R+ +AL LA+ G IV ++
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERE-SALSLASTGGYTDIVGLLLE 90
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
++ + + D G L YAV V+ + LL L E D+ G TP+ + A+
Sbjct: 91 RDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADS-GYTPMDLAVAL 145
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D +G++P+H+A G V +L+ + + D T LHLAA G IV+ ++
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLLQ 93
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA---KGNTPLHVL 135
+ V+ G LHYA + + +L+ N L G+ K PL L
Sbjct: 94 YKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152
Query: 136 AAIRPNEFDVDLVR 149
R + +L R
Sbjct: 153 LRERAEKMGQNLNR 166
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D +G++P+H+A G V +L+ + + D T LHLAA G IV+ ++
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAASHGHRDIVQKLLQ 88
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDA---KGNTPLHVL 135
+ V+ G LHYA + + +L+ N L G+ K PL L
Sbjct: 89 YKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 147
Query: 136 AAIRPNEFDVDLVR 149
R + +L R
Sbjct: 148 LRERAEKMGQNLNR 161
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 7/120 (5%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G+TP+ +A+ +G TV LLE + +I K+R+ +AL LA+ G IV ++
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERE-SALSLASTGGYTDIVGLLLE 90
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAI 138
++ + + D G L YAV V+ + LL L E D+ G TP+ + A+
Sbjct: 91 RDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLAR---GADLTTEADS-GYTPMDLAVAL 145
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
D G TP+H AA G+ V +LL+ D +AS+I + T LHLAA G IVE +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR----TPLHLAATVGHLEIVEVL 99
Query: 77 I 77
+
Sbjct: 100 L 100
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE 43
+D +G TP+H AA G+ V +LLE
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D GWTP+H A +G+ V LLL+ + ++ + LH AA G IV+ ++S
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND--SPLHDAAKNGHVDIVKLLLS 97
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 56 RKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNP 115
R T LH+A+ KGD VE ++ +N + D+ GW LH A ++ + LL++
Sbjct: 9 RGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-- 65
Query: 116 LARSLINEGDAKGNTPLH 133
++L+N + ++PLH
Sbjct: 66 --KALVNTTGYQNDSPLH 81
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G+ IH AA G T+ LLE Q+ NI D + + LHLAA +G R+VE ++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D+ G+ IH AA G T+ LLE Q+ NI D + + LHLAA +G R+VE ++
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
DQ G TP+ +AAY + LL T + N+ DK K TALH A G+ ++ ++
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G P+H A YG+Y LL++ + N+AD K T LH AA KG I + ++
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQ 129
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAIISKNPE 82
TP+H+AA Y V LL Q +++ KD+ + LH A G + E ++ K+
Sbjct: 44 TPLHFAAGYNRVSVVEYLL---QHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 99
Query: 83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHVLAAIRP 140
+ D + LH A + E LL++ +P ++ GNTPL + ++
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDL---VKD 150
Query: 141 NEFDV-DLVRKTQA 153
+ D+ DL+R A
Sbjct: 151 GDTDIQDLLRGDAA 164
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK--MTALHLAAGKGDARIVEAI 76
D+ G T + + A G+ V LL E + +++ +D + +TALH+AAG +VEA+
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL 116
+ + E+ D RG L A E L + NP+
Sbjct: 130 VELGADI-EVEDERGLTALELA-----REILKTTPKGNPM 163
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G P+H A YG+Y LL++ + N+AD K T LH AA KG I + ++
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQ 131
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAIISKNPE 82
TP+H+AA Y V LL Q +++ KD+ + LH A G + E ++ K+
Sbjct: 46 TPLHFAAGYNRVSVVEYLL---QHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGA 101
Query: 83 CYELVDNRGWNFLHYAVVSFRVEKLTNLLEN--NPLARSLINEGDAKGNTPLHVLAAIRP 140
+ D + LH A + E LL++ +P + + GNTPL + ++
Sbjct: 102 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKK------NRDGNTPLDL---VKD 152
Query: 141 NEFDV-DLVRKTQA 153
+ D+ DL+R A
Sbjct: 153 GDTDIQDLLRGDAA 166
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNP 81
G TP+H AA G+ V LL + + N KD T LHLAA G A IV+ +++K
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLAKGA 66
Query: 82 E 82
+
Sbjct: 67 D 67
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRK--MTALHLAAGKGDARIVEAI 76
D+ G T + + A G+ V LL E + +++ +D + +TALH+AAG +VEA+
Sbjct: 74 DENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPL 116
+ + E+ D RG L A E L + NP+
Sbjct: 131 VELGADI-EVEDERGLTALELA-----REILKTTPKGNPM 164
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 33 GNYGTVNLLLETDQSASNIAD------KD---RKMTALHLAAGKGDARIVEAIISKNPEC 83
G T+ +LL+ + N+ + +D R TALH+A + VE ++++ +
Sbjct: 58 GRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADV 117
Query: 84 YELVDNRGWN------FLHYAVVSFRVEKLTN------LLENNPLARSLINEGDAKGNTP 131
+ R + + ++ + + TN L NP ++ + D++GNT
Sbjct: 118 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTV 177
Query: 132 LHVLAAIRPN 141
LH L AI N
Sbjct: 178 LHALVAIADN 187
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 18 TDQYGWTPIHYAAYYGNY----------GTVNLLLETDQSASNIADKDRKMTALHLAAGK 67
D YG+T AA YG VNL +T + + + TAL AA K
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL--RKGGATALMDAAEK 158
Query: 68 GDARIVEAIISKNPECYELVDNRGWNFLHYAVVS---FRVEKLTNLLENNPLARSLINEG 124
G +++ ++ + DN G N L +A++S VE +T+LL ++ + +N
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG---ADVNVR 215
Query: 125 DAKGNTPL 132
+G TPL
Sbjct: 216 GERGKTPL 223
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
++ GWTP+H A V LLL A + K T LAA G ++++ +S
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKL 107
K + E D G+ A V +V+ L
Sbjct: 94 KGADVNE-CDFYGFTAFMEAAVYGKVKAL 121
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
D G TP+H AA G+ V +LL+ D +A +I + T LHLAA G IVE +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR----TPLHLAATVGHLEIVEVL 99
Query: 77 IS 78
+
Sbjct: 100 LE 101
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D +G TP+H AA G+ V +LL+ + + R T LHLAA IVE ++
Sbjct: 43 NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR--TPLHLAAWADHLEIVEVLL 100
Query: 78 SKNPEC 83
+
Sbjct: 101 KHGADV 106
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D+ G IH AA G T+ LLE Q+ NI D + + LHLAA +G R+VE ++
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVEFLV 123
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 19 DQYGWTPIHYAAYYGNY----------GTVNLLLETDQSASNIADKDRKMTALHLAAGKG 68
D YG+T AA YG VNL +T + + + TAL AA KG
Sbjct: 122 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERL--RKGGATALMDAAEKG 179
Query: 69 DARIVEAIISKNPECYELVDNRGWNFLHYAVVS---FRVEKLTNLLENNPLARSLINEGD 125
+++ ++ + DN G N L +A++S VE +T+LL ++ + +N
Sbjct: 180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG---ADVNVRG 236
Query: 126 AKGNTPL 132
+G TPL
Sbjct: 237 ERGKTPL 243
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
++ GWTP+H A V LLL A + K T LAA G ++++ +S
Sbjct: 56 EEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFILAAIAGSVKLLKLFLS 113
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKL 107
K + E D G+ A V +V+ L
Sbjct: 114 KGADVNE-CDFYGFTAFMEAAVYGKVKAL 141
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 20 QYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK 79
+ G TP+ A + G V LLE + N D D K TAL LA +I E + +
Sbjct: 237 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIAELLCKR 295
Query: 80 --NPECYELVDNRGWNFLHYAV 99
+ +C +LV N+ H V
Sbjct: 296 GASTDCGDLVMTARRNYDHSLV 317
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
D G TP+H AA G+ V +LL+ D +AS+ + T LHLAA G IVE +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR----TPLHLAATVGHLEIVEVL 99
Query: 77 I 77
+
Sbjct: 100 L 100
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLE 43
+D +G TP+H AA G+ V +LLE
Sbjct: 76 SDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 76 IISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
I+ N +D+ G LH A +E + LL++ + +N D+ G TPLH+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG----ADVNASDSWGRTPLHLA 87
Query: 136 AAIRPNEFDVDLVRKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLS 184
A + E V+++ + A+ +A +K + I + G +L E +QKL+
Sbjct: 88 ATVGHLEI-VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 55 DRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLE 112
D +T LHLAA +G IVE ++ K+ D+ G LH A +E + LLE
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
D+ G TP+H AA Y + V +LL+ A A + T LHLAA G IVE ++
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLK--HGADVNAHDNDGSTPLHLAALFGHLEIVEVLL 100
Query: 78 SKNPEC 83
+
Sbjct: 101 KHGADV 106
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLET----------DQSASNIADKD 55
D GWTP+H AA++G +L+E Q+A ++AD+D
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 59 TALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLEN 113
TALH+AA KG +++ +I + + D GW LH A + E L+EN
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
TP+ A G++ VNLLL Q +++ + + +H AA +G V ++I+
Sbjct: 71 TPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 127
Query: 84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEF 143
+ + G L+ A + + + LLE+ + +N+G + ++PLH +A E
Sbjct: 128 DHKISHLG-TPLYLACENQQRACVKKLLESG----ADVNQGKGQ-DSPLHAVARTASEEL 181
Query: 144 D---VDLVRKTQA 153
+D TQA
Sbjct: 182 ACLLMDFGADTQA 194
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
T +Y + AA GN + LL T + + A RK T LHLAAG RIV+ ++
Sbjct: 20 TGEYKKDELLEAARSGNEEKLMALL-TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78
Query: 78 SKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAA 137
+ + D G LH A E LL++ + +N D TPLH A+
Sbjct: 79 QHGADVHA-KDKGGLVPLHNACSYGHYEVTELLLKHG----ACVNAMDLWQFTPLHEAAS 133
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 4/143 (2%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIAD--KDRKMTALHLAAGKGDARIVEAI 76
D+ G TP+H A GN V+ L+ Q D + + T LHLA +V +
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 77 ISKNPECYELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLA 136
++ L D G H A L LL++ + + G T LHV
Sbjct: 66 VTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 137 AIRPNEFDVDLVRKTQANYDAVN 159
E V L+ + A+ DAV+
Sbjct: 125 NTECQET-VQLLLERGADIDAVD 146
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 33 GNYGTVNLLLETDQSASNIAD------KD---RKMTALHLAAGKGDARIVEAIISKNPEC 83
G T+ +LL+ + N+ + +D R TALH+A + VE ++ K +
Sbjct: 60 GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV 119
Query: 84 YELVDNRGWN------FLHYAVVSFRVEKLTN------LLENNPLARSLINEGDAKGNTP 131
+ R + + ++ + + TN L N ++ + D++GNT
Sbjct: 120 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTV 179
Query: 132 LHVLAAIRPN 141
LH L AI N
Sbjct: 180 LHALVAIADN 189
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D G T +H+AA N VN+LL A+ A D+ T L LAA +G +A++
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLM--HHANRDAQDDKDETPLFLAAREGSYEASKALLD 205
Query: 79 K--NPECYELVD 88
N E + +D
Sbjct: 206 NFANREITDHMD 217
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+YG TP++ A +G+ V +LL+ + + T LHLAA G I E ++
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--DAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 79 KNPEC 83
+
Sbjct: 102 HGADV 106
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVE 74
D G+TP+H AA+ G+ +LL+ N DK K TA ++ G G+ + E
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGK-TAFDISIGNGNEDLAE 130
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 88 DNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVLAAIRPNEFDVDL 147
D G LH A ++ +E + LL+N + +N DA G TPLH++A E V++
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNG----ADVNAIDAIGETPLHLVAMYGHLEI-VEV 98
Query: 148 VRKTQANYDAVNKQIVSVRHI-FNYGYPELKEEIQKLS 184
+ K A+ +A +K + I + G +L E +QKL+
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G TP+H AA + V +LL+ + I T LHL A G IVE ++
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE--TPLHLVAMYGHLEIVEVLLK 101
Query: 79 KNPEC 83
+
Sbjct: 102 HGADV 106
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQS---ASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
G T +H AA Y N +L+E ++ TALH+A + +V A+++
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 79 KNPECYELVDNRGWNFLHYAVVSFRVEKLT--NLLENNPLARSLINEG------DAKGNT 130
+ +++ + ++ + L+ + + + R LI G D+ GNT
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Query: 131 PLHVLAAIRPNE 142
LH+L ++PN+
Sbjct: 157 VLHIL-ILQPNK 167
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
D+ G TP+H AA G+ V LLLE N DK K TA ++ G+ + E +
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADV-NAQDKFGK-TAFDISIDNGNEDLAEIL 91
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 24 TPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPEC 83
TP+ A G++ VNLLL Q +++ + + +H AA +G V ++I+
Sbjct: 127 TPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 183
Query: 84 YELVDNRGWNFLHYAVVSFRVEKLTNLLENNPLARSLINEGDAKGNTPLHVL 135
+ + G L+ A + + + LLE+ + +N+G + ++PLH +
Sbjct: 184 DHKISHLG-TPLYLACENQQRACVKKLLESG----ADVNQGKGQ-DSPLHAV 229
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGKGDARIVEAI 76
D+ G TP+H AA G+ V LLLE + +++ +D+ TA ++ G+ + E +
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLE---AGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2W2C|A Chain A, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|B Chain B, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|C Chain C, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|D Chain D, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|E Chain E, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|F Chain F, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|G Chain G, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|H Chain H, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|I Chain I, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|J Chain J, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|K Chain K, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|L Chain L, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|M Chain M, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
pdb|2W2C|N Chain N, Structure Of The Tetradecameric Oligomerisation Domain Of
Calcium-Calmodulin Dependent Protein Kinase Ii Delta
Length = 144
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 47 SASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWNFLHYAVVSFRVEK 106
S SN +D + A K +++EAI + + E Y + + G + +F E
Sbjct: 1 SMSNTTIEDEDVKARKQEIIKVTEQLIEAINNGDFEAYTKICDPG-------LTAFEPEA 53
Query: 107 LTNLLENNPLARSLINEGDAKGNTPLHVL 135
L NL+E R +K N P+H +
Sbjct: 54 LGNLVEGMDFHRFYFENALSKSNKPIHTI 82
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V I+
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQIL 109
Query: 78 SKN 80
+N
Sbjct: 110 IRN 112
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 22 GWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISK 79
G T +HYAA N V L+ S + D+D K T + LAA +G +V +I +
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK-TPIXLAAQEGRIEVVXYLIQQ 335
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V I+
Sbjct: 53 TDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQIL 109
Query: 78 SKN 80
+N
Sbjct: 110 IRN 112
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V I+
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQIL 110
Query: 78 SKN 80
+N
Sbjct: 111 IRN 113
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 18 TDQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAII 77
TD+ G T +H AA Y LLE A NI D + T LH AA DA+ V I+
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQD-NMGRTPLH-AAVSADAQGVFQIL 77
Query: 78 SKN 80
+N
Sbjct: 78 IRN 80
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLE--TDQSASNI--ADKDRKMTALHLAAGKGDARIVE 74
D G TP+H A G +V +L + T +I A T LHLA+ G IVE
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 131
Query: 75 AIISKNPECYELVDNRGWNFLHYAV 99
++S + G LH AV
Sbjct: 132 LLVSLGADVNAQEPCNGRTALHLAV 156
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 34 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWN 93
NY + +L+ + QS SN DR L + +G A +S+ P YE++ NRG+
Sbjct: 367 NYMSTSLVQDPHQSYSN----DRYPILLEITIPEGVHGAYIADMSEYPGQYEMLINRGYT 422
Query: 94 F 94
F
Sbjct: 423 F 423
>pdb|4FK7|A Chain A, Crystal Structure Of Certhrax Catalytic Domain
Length = 229
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 34 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIISKNPECYELVDNRGWN 93
NY + +L+ + QS SN DR L + +G A +S+ P YE++ NRG+
Sbjct: 144 NYMSTSLVQDPHQSYSN----DRYPILLEITIPEGVHGAYIADMSEYPGQYEMLINRGYT 199
Query: 94 F 94
F
Sbjct: 200 F 200
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 27.7 bits (60), Expect = 9.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAI 76
D+ G+TP+H AA G+ V +LL+ N DK K TA ++ G+ + E +
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGK-TAFDISIDNGNEDLAEIL 87
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 22 GWTPIHYAAYYGNYGTVNLLLE--TDQSASNI--ADKDRKMTALHLAAGKGDARIVEAII 77
G TP+H A G +V +L + T +I A T LHLA+ G IVE ++
Sbjct: 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV 137
Query: 78 SKNPECYELVDNRGWNFLHYAV 99
S + G LH AV
Sbjct: 138 SLGADVNAQEPCNGRTALHLAV 159
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 19 DQYGWTPIHYAAYYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGKGDARIVEAIIS 78
D+ G T +++A + G+ V L N +K TALH AA KG A IV+ +++
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQLLLA 161
Query: 79 K 79
K
Sbjct: 162 K 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,303,698
Number of Sequences: 62578
Number of extensions: 358163
Number of successful extensions: 1290
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 239
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)