BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042925
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 166/260 (63%), Gaps = 6/260 (2%)
Query: 29 TSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKIPDKNST 88
+F NY TW DH N EIQL LD+ +G GF+SK Y G F ++MK+ +S
Sbjct: 15 VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 74
Query: 89 GVLTSFYLASRSSHHDEIDLEFLGN-NGPPYKLHTNLYINGQGGREQQILLWFDPTKDFH 147
G +T+FYL+S++S HDEID EFLGN G PY L TN++ G+G REQ+I LWFDPTK+FH
Sbjct: 75 GTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFH 134
Query: 148 SYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFP-SQPMHIFASIWHAEGWASDG--RKT 204
Y +LWN + IVF VD+VPIRV++N V FP +QPM I++S+W+A+ WA+ G KT
Sbjct: 135 YYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKT 194
Query: 205 DWHQAPFHAHYQDFHVDGCVLQDHNIRECHSPKFWWNAEKYRKLNPDQEREYRNVRKMHL 264
DW +APF A Y+ FH+DGC WW+ ++++ L+ Q R VR+ +
Sbjct: 195 DWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYT 254
Query: 265 VYDYCSSKS--SSHYPECHK 282
+Y+YC+ +S S PEC +
Sbjct: 255 IYNYCTDRSRYPSMPPECKR 274
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 147/266 (55%), Gaps = 18/266 (6%)
Query: 23 SCRADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKI 82
S + + F+ Y WG H + + + LD SG+GF+S RY SG F +K+
Sbjct: 12 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 69
Query: 83 PDKNSTGVLTSFYLASRSSH---HDEIDLEFLGN-NGPPYKLHTNLYINGQGGREQQILL 138
+ GV+TSFYL++ + HDEID+EFLG G PY L TN++I G G RE +I L
Sbjct: 70 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHL 129
Query: 139 WFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWA 198
WFDPT+D+H+Y I W +I+FFVD+VPIR Y + +FP +P+ ++ S+W A WA
Sbjct: 130 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFPLRPLWVYGSVWDASSWA 187
Query: 199 SDGR--KTDWHQAPFHAHYQDFHVDGCVLQDHNIRECHSPKFWWNAEKYRKLNPDQEREY 256
++ K D+ PF Y+DF + C ++ + C+ + Y +L+ Q
Sbjct: 188 TENGKYKADYRYQPFVGKYEDFKLGSCTVEAAS--SCNPA----SVSPYGQLSQQQVAAM 241
Query: 257 RNVRKMHLVYDYCSSKSSSH--YPEC 280
V+K ++VY+YC + H PEC
Sbjct: 242 EWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 147/266 (55%), Gaps = 18/266 (6%)
Query: 23 SCRADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKI 82
S + + F+ Y WG H + + + LD SG+GF+S RY SG F +K+
Sbjct: 35 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 92
Query: 83 PDKNSTGVLTSFYLASRSSH---HDEIDLEFLGN-NGPPYKLHTNLYINGQGGREQQILL 138
+ GV+TSFYL++ + HDEID+EFLG G PY L TN++I G G RE +I L
Sbjct: 93 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHL 152
Query: 139 WFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWA 198
WFDPT+D+H+Y I W +I+FFVD+VPIR Y + +FP +P+ ++ S+W A WA
Sbjct: 153 WFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFPLRPLWVYGSVWDASSWA 210
Query: 199 SDGR--KTDWHQAPFHAHYQDFHVDGCVLQDHNIRECHSPKFWWNAEKYRKLNPDQEREY 256
++ K D+ PF Y+DF + C ++ + C+ + Y +L+ Q
Sbjct: 211 TENGKYKADYRYQPFVGKYEDFKLGSCTVEAAS--SCNPA----SVSPYGQLSQQQVAAM 264
Query: 257 RNVRKMHLVYDYCSSKSSSH--YPEC 280
V+K ++VY+YC + H PEC
Sbjct: 265 EWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 148/271 (54%), Gaps = 23/271 (8%)
Query: 23 SCRADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKI 82
S + + F+ Y WG H + + + LD SG+GF+S RY SG F +K+
Sbjct: 11 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 68
Query: 83 PDKNSTGVLTSFYLASRSSH---HDEIDLEFLGN-NGPPYKLHTNLYINGQG-----GRE 133
+ GV+TSFYL++ + HDEID+EFLG G PY L TN++I G G GRE
Sbjct: 69 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRE 128
Query: 134 QQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWH 193
+I LWFDPT+D+H+Y I W +I+FFVD+VPIR Y + +FP +PM ++ S+W
Sbjct: 129 LRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFPLRPMWVYGSVWD 186
Query: 194 AEGWASDGR--KTDWHQAPFHAHYQDFHVDGCVLQDHNIRECHSPKFWWNAEKYRKLNPD 251
A WA++ K D+ PF Y+DF + C ++ + C+ + Y +L+
Sbjct: 187 ASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAAS--SCNPA----SVSPYGQLSQQ 240
Query: 252 QEREYRNVRKMHLVYDYCSSKSSSH--YPEC 280
Q V+K ++VY+YC + H PEC
Sbjct: 241 QVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 148/271 (54%), Gaps = 23/271 (8%)
Query: 23 SCRADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKI 82
S + + F+ Y WG H + + + LD SG+GF+S RY SG F +K+
Sbjct: 14 SSQITSLGFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKL 71
Query: 83 PDKNSTGVLTSFYLASRSSH---HDEIDLEFLGN-NGPPYKLHTNLYINGQG-----GRE 133
+ GV+TSFYL++ + HDEID+EFLG G PY L TN++I G G GRE
Sbjct: 72 QSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRE 131
Query: 134 QQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWH 193
+I LWFDPT+D+H+Y I W +I+FFVD+VPIR Y + +FP +P+ ++ S+W
Sbjct: 132 MRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPR--KSDATFPLRPLWVYGSVWD 189
Query: 194 AEGWASDGR--KTDWHQAPFHAHYQDFHVDGCVLQDHNIRECHSPKFWWNAEKYRKLNPD 251
A WA++ K D+ PF Y+DF + C ++ + C+ + Y +L+
Sbjct: 190 ASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAAS--SCNPA----SVSPYGQLSQQ 243
Query: 252 QEREYRNVRKMHLVYDYCSSKSSSH--YPEC 280
Q V+K ++VY+YC + H PEC
Sbjct: 244 QVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 25 RADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKS-----GAGFESKMRYGSGLFHIR 79
+AD S ++ TW ++ N D +++L L + A + S YG GL+ +
Sbjct: 20 KADGYSNGGVFNCTWRANNVNFTN-DGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVS 78
Query: 80 MKIPDKNSTGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYKLHTNLYINGQGGREQQI 136
MK P KN TG+++SF+ + +H DEID+EFLG + K+ N Y NG GG E+ I
Sbjct: 79 MK-PAKN-TGIVSSFFTYTGPAHGTQWDEIDIEFLGKD--TTKVQFNYYTNGVGGHEKVI 134
Query: 137 LLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG 196
L FD +K FH+Y W I ++VD V NI PS P I ++W+ G
Sbjct: 135 SLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANI------PSTPGKIMMNLWNGTG 188
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 25 RADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKS-----GAGFESKMRYGSGLFHIR 79
+AD S ++ TW ++ N D +++L L + A + S YG GL+ +
Sbjct: 18 KADGYSNGGVFNCTWRANNVNFTN-DGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVS 76
Query: 80 MKIPDKNSTGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYKLHTNLYINGQGGREQQI 136
MK P KN TG+++SF+ + +H DEID+EFLG + K+ N Y NG GG E+ I
Sbjct: 77 MK-PAKN-TGIVSSFFTYTGPAHGTQWDEIDIEFLGKD--TTKVQFNYYTNGVGGHEKVI 132
Query: 137 LLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG 196
L FD +K FH+Y W I ++VD V NI PS P I ++W+ G
Sbjct: 133 SLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANI------PSTPGKIMMNLWNGTG 186
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 25 RADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKS-----GAGFESKMRYGSGLFHIR 79
+AD S ++ TW ++ N D +++L L + A + S YG GL+ +
Sbjct: 20 KADGYSNGGVFNCTWRANNVNFTN-DGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVS 78
Query: 80 MKIPDKNSTGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYKLHTNLYINGQGGREQQI 136
MK P KN TG+++SF+ + +H D+ID++FLG + K+ N Y NG GG E+ I
Sbjct: 79 MK-PAKN-TGIVSSFFTYTGPAHGTQWDQIDIQFLGKD--TTKVQFNYYTNGVGGHEKVI 134
Query: 137 LLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG 196
L FD +K FH+Y W I ++VD V NI PS P I ++W+ G
Sbjct: 135 SLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANI------PSTPGKIMMNLWNGTG 188
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 63 AGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYK 119
A + S YG GL+ + MK P KN TG+++SF+ + +H DEID+EFLG + K
Sbjct: 4 AEYRSTNIYGYGLYEVSMK-PAKN-TGIVSSFFTYTGPAHGTQWDEIDIEFLGKD--TTK 59
Query: 120 LHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVS 179
+ N Y NG GG E+ I L FD +K FH+Y W I ++VD V NI
Sbjct: 60 VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANI----- 114
Query: 180 FPSQPMHIFASIWHAEG 196
PS P I ++W+ G
Sbjct: 115 -PSTPGKIMMNLWNGTG 130
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 63 AGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYK 119
A + S YG GL+ + MK P KN TG+++SF+ + +H DEID+EFLG + K
Sbjct: 4 AEYRSTNIYGYGLYEVSMK-PAKN-TGIVSSFFTYTGPAHGTQWDEIDIEFLGKD--TTK 59
Query: 120 LHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVS 179
+ N Y NG GG E+ I L FD +K FH+Y W I ++VD V NI
Sbjct: 60 VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANI----- 114
Query: 180 FPSQPMHIFASIWHAEG 196
PS P I ++W+ G
Sbjct: 115 -PSTPGKIMMNLWNGTG 130
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 63 AGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYK 119
A + S YG GL+ + MK P KN TG+++SF+ + +H DEID+EFLG + K
Sbjct: 4 AEYRSTNIYGYGLYEVSMK-PAKN-TGIVSSFFTYTGPAHGTQWDEIDIEFLGKD--TTK 59
Query: 120 LHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVS 179
+ N Y NG GG E+ I L FD +K FH+Y W I ++VD V NI
Sbjct: 60 VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANI----- 114
Query: 180 FPSQPMHIFASIWHAEG 196
PS P I ++W+ G
Sbjct: 115 -PSTPGKIMMNLWNGTG 130
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 26/188 (13%)
Query: 39 WGHDHALLLNQDREIQLTLDQKS-----GAGFESKMRYGSGLFHIRMKIPDKNSTGVLTS 93
W DH + + E++L+L S G G +S YG GL+ + MK P KN G++++
Sbjct: 21 WAFDHVSMTSLG-EMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK-PAKN-VGIVSA 77
Query: 94 FYLASRSSHH---DEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLWFDPTKDFHSYK 150
FY ++ + DEID+EFLG + K+ N Y NG G E+ + L FD +H+Y
Sbjct: 78 FYTSTGPTDGTPWDEIDIEFLGKD--TTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYA 135
Query: 151 ILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG---WASDGRKTDWH 207
W + I ++VD I P P I+ S+W G W
Sbjct: 136 FDWQPNSIKWYVDGQLKHTATTQI------PQTPGKIYMSLWAGAGVDEWLGSYNGV--- 186
Query: 208 QAPFHAHY 215
P +AHY
Sbjct: 187 -TPLYAHY 193
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 25 RADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFE-----SKMRYGSGLFHIR 79
+AD S + ++ TW ++ + + E++L L + F+ S YG GL+ +R
Sbjct: 44 KADGYSNGNMFNCTWRANNVSMTSLG-EMRLALTSPAYNKFDCGENRSVQTYGYGLYEVR 102
Query: 80 MKIPDKNSTGVLTSFYL---ASRSSHHDEIDLEFLGNNGPPYKLHTNLYINGQGGREQQI 136
MK P KN TG+++SF+ + + DEID+EFLG + K+ N Y NG G E+ +
Sbjct: 103 MK-PAKN-TGIVSSFFTYTGPTDGTPWDEIDIEFLGKD--TTKVQFNYYTNGAGNHEKIV 158
Query: 137 LLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG 196
L FD +H+Y W + I ++VD N I P+ P I ++W+ G
Sbjct: 159 DLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATNQI------PTTPGKIMMNLWNGTG 212
Query: 197 ---WASDGRKTDWHQAPFHAHY 215
W + P +AHY
Sbjct: 213 VDEWLGSYNGVN----PLYAHY 230
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 87 STGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLWFDPT 143
+TG+++SF+ + +H DEID+EFLG + K+ N Y NG GG E+ I L FD +
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKD--TTKVQFNYYTNGVGGHEKVISLGFDAS 58
Query: 144 KDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG 196
K FH+Y W I ++VD V NI PS P I ++W+ G
Sbjct: 59 KGFHTYAFDWQPGYIKWYVDGVLKHTATANI------PSTPGKIMMNLWNGTG 105
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 42 DHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRSS 101
D L L+ ++ + +GA + ++ ++G GL+ +RMK P KN G+++SF+ +
Sbjct: 61 DGILNLSITDDMPSSSKPYAGAEYRTRDKFGYGLYQVRMK-PAKNP-GIVSSFFTYTGPV 118
Query: 102 HH---DEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQI 158
H DEID+EFLG + K+ N Y N G E L FD ++DFH Y W + I
Sbjct: 119 HGTPWDEIDIEFLGKDTT--KVQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYI 176
Query: 159 VFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG 196
+ VD + R P P I +IW G
Sbjct: 177 AWLVDGEEV------YRAYDDIPVHPGKIMLNIWPGIG 208
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 92/202 (45%), Gaps = 26/202 (12%)
Query: 25 RADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFE-----SKMRYGSGLFHIR 79
+AD S + ++ TW ++ + + E++L+L S F+ S YG GL+ +
Sbjct: 20 KADGYSNGNMFNCTWRANNVSMTSLG-EMRLSLTSPSYNKFDCGENRSVQTYGYGLYEVN 78
Query: 80 MKIPDKNSTGVLTSFYL---ASRSSHHDEIDLEFLGNNGPPYKLHTNLYINGQGGREQQI 136
MK P KN G+++SF+ + + DEID+EFLG + K+ N Y NG G E+ +
Sbjct: 79 MK-PAKN-VGIVSSFFTYTGPTDGTPWDEIDIEFLGKD--TTKVQFNYYTNGVGNHEKIV 134
Query: 137 LLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEG 196
L FD +H+Y W + I ++VD I P P I ++W+ G
Sbjct: 135 NLGFDAANSYHTYAFDWQPNSIKWYVDGQLKHTATTQI------PQTPGKIMMNLWNGAG 188
Query: 197 ---WASDGRKTDWHQAPFHAHY 215
W P +AHY
Sbjct: 189 VDEWLGSYNGV----TPLYAHY 206
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 25 RADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKS-----GAGFESKMRYGSGLFHIR 79
+AD S ++ TW ++ N D +++L L + A + S YG GL+ +
Sbjct: 108 KADGYSNGGVFNCTWRANNVNFTN-DGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVS 166
Query: 80 MKIPDKNSTGVLTSFYLASRSSHH---DEIDLEFLGNNGPPYKLHTNLYING 128
MK P KN TG+++SF+ + +H DEID+EFLG + K+ N Y NG
Sbjct: 167 MK-PAKN-TGIVSSFFTYTGPAHGTQWDEIDIEFLGKD--TTKVQFNYYTNG 214
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 130 GGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFA 189
GG E+ I L FD +K FH+Y W I ++VD V NI PS P I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATANI------PSTPGKIMM 55
Query: 190 SIWHAEG 196
++W+ G
Sbjct: 56 NLWNGTG 62
>pdb|2BMO|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase
pdb|2BMQ|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With Nitrobenzene
pdb|2BMR|A Chain A, The Crystal Structure Of Nitrobenzene Dioxygenase In
Complex With 3-Nitrotoluene
Length = 447
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 21 RISCRADTTSF-----NDNYHVTWGHDHALLLNQDREIQLTLDQK---SGAGFESKMRYG 72
++ +A+ SF D YHV W H AL Q + + K GAG + +YG
Sbjct: 186 KVVVKANWKSFAENFVGDGYHVGWTHAAALRAGQSVFSSIAGNAKLPPEGAGLQMTSKYG 245
Query: 73 SGL 75
SG+
Sbjct: 246 SGM 248
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 75 LFHIRMKIPDKNSTGVLTSFYLASRSSHH------DEID-LEFLGNNGPPYKLHTNLYIN 127
+ R+K+P G+ +F++ + EID +EFLG+ P +H ++
Sbjct: 103 VVEARIKLP--KGKGLWPAFWMLGSNIREVGWPNCGEIDIMEFLGHE--PRTIHGTVHGP 158
Query: 128 GQGGREQQILLWFDP------TKDFHSYKILWNEHQIVFFVDN 164
G G + + P T+DFH + I+W +I ++VD
Sbjct: 159 GYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPDKIKWYVDG 201
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 17/131 (12%)
Query: 74 GLFHIRMKIPDKNSTGVLTSFYLASRS------SHHDEID-LEFLGNNGPPYKLHTNLYI 126
G R++IP G+ +F++ S EID +E +G P+++H ++
Sbjct: 84 GRIEARIQIP--RGQGIWPAFWMLGGSFPGTPWPSSGEIDIMENVGFE--PHRVHGTVHG 139
Query: 127 NGQGGREQQILLWFDP-----TKDFHSYKILWNEHQIVFFVDNVPI-RVYRNNIRKKVSF 180
G G ++ P FH++ + W +I +FVD RV R ++
Sbjct: 140 PGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDGQQFHRVTRASVGANAWV 199
Query: 181 PSQPMHIFASI 191
QP + ++
Sbjct: 200 FDQPFFLILNV 210
>pdb|3U7R|A Chain A, Ferb - Flavoenzyme Nad(P)h:(Acceptor) Oxidoreductase
(Ferb) From Paracoccus Denitrificans
pdb|3U7R|B Chain B, Ferb - Flavoenzyme Nad(P)h:(Acceptor) Oxidoreductase
(Ferb) From Paracoccus Denitrificans
Length = 190
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 192 WHAEGWASDGRKTDWHQAPFHAHYQDFHVD 221
WHAE +A+DG TD A F + D VD
Sbjct: 147 WHAEAYAADGSVTDEKTAKFLQGFVDAFVD 176
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 67 SKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRSSH-------HDEIDL-EFLGNNGPPY 118
K + G F IR ++P T + L R ++ + EID+ E +G N
Sbjct: 79 GKASWTYGRFEIRARLPSGRGTWPAI-WMLPDRQTYGSAYWPDNGEIDIAEHVGFNPDVV 137
Query: 119 --KLHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDN 164
+HT Y + G + + DFH Y I W +I +FVD+
Sbjct: 138 HGTVHTKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDD 185
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 140 FDPTKDFHSYKILWNEHQIVFFVD 163
FDP DFH+Y + + +I ++VD
Sbjct: 186 FDPRNDFHTYGVNVTKDKITWYVD 209
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,659,922
Number of Sequences: 62578
Number of extensions: 420543
Number of successful extensions: 856
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 27
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)