Query 042925
Match_columns 282
No_of_seqs 274 out of 1626
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 2.3E-80 4.9E-85 569.6 33.1 273 10-282 5-288 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 4.8E-79 1E-83 556.7 32.0 252 28-280 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 7.8E-45 1.7E-49 321.3 25.3 179 35-223 10-202 (203)
4 cd02175 GH16_lichenase lichena 100.0 1E-38 2.2E-43 283.2 25.1 176 33-221 23-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.1E-35 2.4E-40 256.4 22.4 174 32-219 2-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 6.6E-34 1.4E-38 249.6 23.6 172 36-221 24-210 (210)
7 cd08023 GH16_laminarinase_like 100.0 5.1E-32 1.1E-36 242.8 22.7 177 36-221 32-235 (235)
8 cd02178 GH16_beta_agarase Beta 100.0 2E-31 4.3E-36 243.2 22.0 177 38-221 54-257 (258)
9 cd02177 GH16_kappa_carrageenas 100.0 4.8E-29 1E-33 229.0 21.4 170 41-221 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 4E-28 8.6E-33 225.5 21.2 181 37-221 36-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 8.4E-28 1.8E-32 219.5 21.1 181 38-221 42-258 (259)
12 COG2273 SKN1 Beta-glucanase/Be 99.9 9.3E-26 2E-30 214.1 19.1 177 34-217 71-261 (355)
13 cd08024 GH16_CCF Coelomic cyto 99.9 1.3E-25 2.9E-30 211.8 19.6 135 62-198 101-279 (330)
14 cd02179 GH16_beta_GRP beta-1,3 99.9 2.5E-25 5.5E-30 209.1 18.1 130 62-195 98-268 (321)
15 PF06955 XET_C: Xyloglucan end 99.7 1.2E-18 2.6E-23 121.7 3.6 45 235-280 4-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 3.8E-14 8.3E-19 138.9 15.8 87 143-235 365-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.3 1.2E-11 2.6E-16 114.6 12.5 141 52-198 50-251 (293)
18 PF09264 Sial-lect-inser: Vibr 95.8 0.086 1.9E-06 46.2 9.6 96 54-170 10-120 (198)
19 PF13385 Laminin_G_3: Concanav 93.9 1.4 3.1E-05 34.9 11.5 65 143-222 84-148 (157)
20 smart00560 LamGL LamG-like jel 91.8 5.9 0.00013 32.1 14.4 69 142-225 59-130 (133)
21 smart00210 TSPN Thrombospondin 91.7 3.8 8.1E-05 35.4 11.7 88 75-171 55-144 (184)
22 cd00152 PTX Pentraxins are pla 87.7 18 0.00039 31.5 17.6 73 142-222 88-162 (201)
23 smart00159 PTX Pentraxin / C-r 87.6 19 0.00041 31.6 18.2 127 75-222 34-162 (206)
24 cd00110 LamG Laminin G domain; 82.9 22 0.00048 28.3 15.7 84 73-169 21-105 (151)
25 PF06439 DUF1080: Domain of Un 82.3 3.3 7.1E-05 34.9 5.6 106 62-173 43-156 (185)
26 PF10287 DUF2401: Putative TOS 79.6 8.3 0.00018 35.1 7.3 75 76-155 103-206 (235)
27 PF14099 Polysacc_lyase: Polys 77.6 48 0.001 29.0 12.9 75 136-220 144-224 (224)
28 PF00354 Pentaxin: Pentaxin fa 68.9 49 0.0011 29.0 9.4 72 142-221 82-155 (195)
29 KOG1834 Calsyntenin [Extracell 61.6 36 0.00079 35.6 8.0 52 143-198 441-492 (952)
30 smart00282 LamG Laminin G doma 54.2 64 0.0014 25.4 7.0 27 143-169 61-87 (135)
31 PF02210 Laminin_G_2: Laminin 45.4 1.3E+02 0.0029 22.7 9.4 74 143-221 53-126 (128)
32 PF09224 DUF1961: Domain of un 38.9 3E+02 0.0064 24.9 9.8 58 144-220 159-218 (218)
33 KOG4352 Fas-mediated apoptosis 29.1 99 0.0022 26.5 4.4 35 134-169 93-127 (187)
34 PF07691 PA14: PA14 domain; I 27.0 1E+02 0.0022 24.5 4.1 28 142-170 57-84 (145)
35 PF06832 BiPBP_C: Penicillin-B 26.8 76 0.0016 23.7 3.1 36 156-193 43-79 (89)
36 PF12248 Methyltransf_FA: Farn 25.1 3.2E+02 0.007 21.0 7.1 45 143-193 51-97 (102)
37 KOG0674 Calreticulin [Posttran 24.6 6.5E+02 0.014 24.4 9.6 24 146-169 170-194 (406)
38 cd06482 ACD_HspB10 Alpha cryst 24.0 1.2E+02 0.0026 23.2 3.7 45 41-85 21-65 (87)
39 cd06526 metazoan_ACD Alpha-cry 23.7 1.3E+02 0.0028 22.2 3.8 43 40-85 19-61 (83)
40 KOG1691 emp24/gp25L/p24 family 20.8 3.8E+02 0.0083 24.1 6.7 55 52-111 61-119 (210)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=2.3e-80 Score=569.59 Aligned_cols=273 Identities=40% Similarity=0.832 Sum_probs=245.4
Q ss_pred HHHHHHHHHHhhh-ccccCCCCccCCceeeecCCCeEEeCCCceEEEEEeCCCcceEEEceeeeccEEEEEEEeeCCCCC
Q 042925 10 FAFIVLLVTSLRI-SCRADTTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKIPDKNST 88 (282)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~w~~~~v~~~~~G~~l~L~l~~~sga~i~S~~~f~YG~~eariKl~~g~s~ 88 (282)
.+|++.+++++++ .-.....+|.++|.+.|+.+|+.+..+|+.|+|+||+.+|++|+||+.|+||+||+|||+|+|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~sa 84 (291)
T PLN03161 5 KTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSA 84 (291)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCC
Confidence 4555555554443 211235789999999999999999888889999999999999999999999999999999998889
Q ss_pred ceEeeEEEecCCCCCCceEEEEcCC-CCCCceEEeeEEecCcCCeeeEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEE
Q 042925 89 GVLTSFYLASRSSHHDEIDLEFLGN-NGPPYKLHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPI 167 (282)
Q Consensus 89 G~v~Af~l~s~~~~~~EIDiE~lGn-~g~p~~~qtn~~~~g~g~~e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~v 167 (282)
|+||||||++.++.+|||||||||+ +|+|+++|+|+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++|
T Consensus 85 G~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~i 164 (291)
T PLN03161 85 GTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPI 164 (291)
T ss_pred CeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEE
Confidence 9999999998767799999999999 889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcCCCC-CceEEEEEeecCCCCCCCCC--CCCCCCCCeEEEEcEEEEeeeecCCC-CCccccC--CCcccc
Q 042925 168 RVYRNNIRKKVSFPS-QPMHIFASIWHAEGWASDGR--KTDWHQAPFHAHYQDFHVDGCVLQDH-NIRECHS--PKFWWN 241 (282)
Q Consensus 168 r~~~~~~~~g~~~P~-~Pm~l~lnlW~gg~Wat~gg--~~d~~~~Pf~a~~~~~~v~~c~~~~~-~~~~c~~--~~~~~~ 241 (282)
|++++.+..|.+||+ +||+|++|||+|++|||+|| +|||+++||+|.|++|++++|.+++. ....|.+ ...||+
T Consensus 165 Rt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~ 244 (291)
T PLN03161 165 RVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWT 244 (291)
T ss_pred EEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCcccccc
Confidence 999987777889998 89999999999999999985 69999999999999999999987643 3357975 467999
Q ss_pred cccccCCCHHHHHHHHHhhccCeEEeccCCCC--CC-CCCCCCC
Q 042925 242 AEKYRKLNPDQEREYRNVRKMHLVYDYCSSKS--SS-HYPECHK 282 (282)
Q Consensus 242 ~~~~~~l~~~~~~~~~~v~~~~m~YdYC~d~~--~~-~p~EC~~ 282 (282)
++.|+.|+++|+++|+|||+||||||||+|++ |+ +||||.+
T Consensus 245 ~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~ 288 (291)
T PLN03161 245 SPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFK 288 (291)
T ss_pred CccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCC
Confidence 99999999999999999999999999999998 88 6999975
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=4.8e-79 Score=556.69 Aligned_cols=252 Identities=52% Similarity=1.027 Sum_probs=236.6
Q ss_pred CCCccCCceeeecCCCeEEeCCCceEEEEEeCCCcceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecCC-CCCCce
Q 042925 28 TTSFNDNYHVTWGHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS-SHHDEI 106 (282)
Q Consensus 28 ~~~f~~~~~~~w~~~~v~~~~~G~~l~L~l~~~sga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~-~~~~EI 106 (282)
+.+|.++|.++|+++||++.++|+.|+|+||+.+|++|.|+..|+||+||||||+|+|+++|+||||||++++ +.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4679999999999999999888999999999999999999999999999999999998889999999999998 889999
Q ss_pred EEEEcCC-CCCCceEEeeEEecCcCCeeeEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCCCC-Cc
Q 042925 107 DLEFLGN-NGPPYKLHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPS-QP 184 (282)
Q Consensus 107 DiE~lGn-~g~p~~~qtn~~~~g~g~~e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~-~P 184 (282)
|||+||+ +|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+ +|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 9999999 889999999999999989999999999999999999999999999999999999999988777889998 99
Q ss_pred eEEEEEeecCCCCCCCCC--CCCCCCCCeEEEEcEEEEeeeecCCCCCccccC--CCcccccccccCCCHHHHHHHHHhh
Q 042925 185 MHIFASIWHAEGWASDGR--KTDWHQAPFHAHYQDFHVDGCVLQDHNIRECHS--PKFWWNAEKYRKLNPDQEREYRNVR 260 (282)
Q Consensus 185 m~l~lnlW~gg~Wat~gg--~~d~~~~Pf~a~~~~~~v~~c~~~~~~~~~c~~--~~~~~~~~~~~~l~~~~~~~~~~v~ 260 (282)
|+|++|||+||+|||+|| ++||+++||+|.|++|+|++|.+++ ....|.. ...||+.+.+++|+++|+++|+|||
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 241 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDP-GDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVR 241 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCC-CCccccCCCccccccccccccCCHHHHHHHHHHH
Confidence 999999999999999985 8999999999999999999999874 3345653 2579999999999999999999999
Q ss_pred ccCeEEeccCCCC--CCCCCCC
Q 042925 261 KMHLVYDYCSSKS--SSHYPEC 280 (282)
Q Consensus 261 ~~~m~YdYC~d~~--~~~p~EC 280 (282)
+||||||||+|++ |.+||||
T Consensus 242 ~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 242 RNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HCCEEEecCCCCCcCCCCcCCC
Confidence 9999999999999 8789999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=7.8e-45 Score=321.26 Aligned_cols=179 Identities=26% Similarity=0.462 Sum_probs=157.1
Q ss_pred ceeeecCCCeEEeCCCceEEEEEeCC-CcceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecCCCCCCceEEEEcCC
Q 042925 35 YHVTWGHDHALLLNQDREIQLTLDQK-SGAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRSSHHDEIDLEFLGN 113 (282)
Q Consensus 35 ~~~~w~~~~v~~~~~G~~l~L~l~~~-sga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~~~~~EIDiE~lGn 113 (282)
+..+..+++|... +++|+|+|++. +|++|.|++.|+||+||||||+|.+ +|+||||||++++ ++|||||++|+
T Consensus 10 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~~--~gEIDIE~~G~ 83 (203)
T cd02183 10 YDWTVTSGTVDYD--DDGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSDD--LDEIDWEWVGG 83 (203)
T ss_pred CccEecCCcEeEC--CCeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECCC--CCEEEEEecCC
Confidence 4455678888875 34699999988 7899999999999999999999998 8999999999876 79999999998
Q ss_pred CCCCceEEeeEEecCcC---CeeeEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecCC-CCcCCCCCceEEEE
Q 042925 114 NGPPYKLHTNLYINGQG---GREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIR-KKVSFPSQPMHIFA 189 (282)
Q Consensus 114 ~g~p~~~qtn~~~~g~g---~~e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~g~~~P~~Pm~l~l 189 (282)
++..+|+|++.++.. ++++.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+..||.+||+|++
T Consensus 84 --~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~~P~~l~l 161 (203)
T cd02183 84 --DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQTPMRLQI 161 (203)
T ss_pred --CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCCCCcEEEE
Confidence 788999999977654 455667788888899999999999999999999999999986542 35679999999999
Q ss_pred EeecCCC---------CCCCCCCCCCCCCCeEEEEcEEEEeee
Q 042925 190 SIWHAEG---------WASDGRKTDWHQAPFHAHYQDFHVDGC 223 (282)
Q Consensus 190 nlW~gg~---------Wat~gg~~d~~~~Pf~a~~~~~~v~~c 223 (282)
|+|.||+ || |+++||+.+||+|.|++|+|.++
T Consensus 162 n~W~gg~~~~~~g~~~Wa--Gg~~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 162 GIWAGGDPSNAPGTIEWA--GGETDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred EEecCCCccccCCcccCC--CCccCCCCCCEEEEEEEEEEEeC
Confidence 9999985 99 67899999999999999999753
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=1e-38 Score=283.20 Aligned_cols=176 Identities=30% Similarity=0.590 Sum_probs=151.8
Q ss_pred CCceeeecCCCeEEeCCCceEEEEEeCC-------CcceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecCC---CC
Q 042925 33 DNYHVTWGHDHALLLNQDREIQLTLDQK-------SGAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS---SH 102 (282)
Q Consensus 33 ~~~~~~w~~~~v~~~~~G~~l~L~l~~~-------sga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~---~~ 102 (282)
+...++|.++||.+. +| .|+|++.+. ++++|.|+++|+||+||||||++.+ +|+|+||||++.. ..
T Consensus 23 ~~~~~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~ 98 (212)
T cd02175 23 GPFNCTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDP 98 (212)
T ss_pred CcEeeeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCC
Confidence 345578999999996 45 799998754 3799999999999999999999987 8999999999742 45
Q ss_pred CCceEEEEcCCCCCCceEEeeEEecCcCCeeeEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCCCC
Q 042925 103 HDEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPS 182 (282)
Q Consensus 103 ~~EIDiE~lGn~g~p~~~qtn~~~~g~g~~e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 182 (282)
++|||||++|+ ++..+++|+|.++.++.+..+.+.++++++||+|+|+|+|++|+|||||+++++++..+ ..+|.
T Consensus 99 ~~EIDiE~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~ 173 (212)
T cd02175 99 HDEIDIEFLGK--DTTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD 173 (212)
T ss_pred CCEEEEEEccC--CCCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC
Confidence 79999999998 56678999998877666667778889999999999999999999999999999987643 36899
Q ss_pred CceEEEEEeecCC---CCCCCCCCCCCCCCCeEEEEcEEEEe
Q 042925 183 QPMHIFASIWHAE---GWASDGRKTDWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 183 ~Pm~l~lnlW~gg---~Wat~gg~~d~~~~Pf~a~~~~~~v~ 221 (282)
+||+|++|+|.++ +|+ |.+|. ..|++|.|++|||.
T Consensus 174 ~p~~i~~n~w~~~~~~~W~---G~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 174 TPGKIMMNLWPGDGVDDWL---GPFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CCcEEEEEEEcCCCCCCcC---CcCCC-CCCeEEEEEEEEEe
Confidence 9999999999985 598 57777 88999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.1e-35 Score=256.40 Aligned_cols=174 Identities=30% Similarity=0.614 Sum_probs=150.1
Q ss_pred cCCceeeecCCCeEEeCCCceEEEEEeC-----CCcceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecCC--CCCC
Q 042925 32 NDNYHVTWGHDHALLLNQDREIQLTLDQ-----KSGAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS--SHHD 104 (282)
Q Consensus 32 ~~~~~~~w~~~~v~~~~~G~~l~L~l~~-----~sga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~--~~~~ 104 (282)
.+.+.++|+++||.+.++ +.|+|++++ .++++|+|+..++||+||+|||++.+ +|+++||||.+.+ +.++
T Consensus 2 ~~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~ 78 (185)
T PF00722_consen 2 GDQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGG 78 (185)
T ss_dssp CCTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTE
T ss_pred CCceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchh
Confidence 467999999999999644 589999988 46899999999999999999998876 8999999997532 6789
Q ss_pred ceEEEEcCCCCCCceEEeeEEecCcCCe--eeEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCCCC
Q 042925 105 EIDLEFLGNNGPPYKLHTNLYINGQGGR--EQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPS 182 (282)
Q Consensus 105 EIDiE~lGn~g~p~~~qtn~~~~g~g~~--e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~ 182 (282)
|||||++|+ .+..+++|+|..+.+.. +.++.+.+++.++||+|+|+|+|++|+|||||++++++......+.++|.
T Consensus 79 EIDiE~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 79 EIDIEFLGN--DPTQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEEETT--STTEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhhccc--cccceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 999999998 56679999999888765 56677788999999999999999999999999999999876544346899
Q ss_pred -CceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEE
Q 042925 183 -QPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFH 219 (282)
Q Consensus 183 -~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~ 219 (282)
.||+|.+++|.+++|++..+ .|+||+||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~---------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG---------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC---------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC---------EEEEEeEC
Confidence 99999999999998874322 78888886
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=6.6e-34 Score=249.64 Aligned_cols=172 Identities=31% Similarity=0.566 Sum_probs=145.1
Q ss_pred eeeecCCCeEEeCCCceEEEEEeCC------CcceEEE-ceeeeccEEEEEEEeeCCCCCceEeeEEEecCC---CCCCc
Q 042925 36 HVTWGHDHALLLNQDREIQLTLDQK------SGAGFES-KMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS---SHHDE 105 (282)
Q Consensus 36 ~~~w~~~~v~~~~~G~~l~L~l~~~------sga~i~S-~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~---~~~~E 105 (282)
...|+++||.+.++| .|+|++++. ++++|.| ++.|+||+||+|||++.+ .|+++||||++.+ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 568899999986546 799999754 4689999 999999999999999987 8999999999976 56999
Q ss_pred eEEEEcCCCCCCceEEeeEEecCcC-----CeeeEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCC
Q 042925 106 IDLEFLGNNGPPYKLHTNLYINGQG-----GREQQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSF 180 (282)
Q Consensus 106 IDiE~lGn~g~p~~~qtn~~~~g~g-----~~e~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~ 180 (282)
||||++|+ ++..+++++|..+.+ .....+.+++++.++||+|+|+|+|+.|+|||||++++++.+ .+
T Consensus 101 IDiE~~~~--~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~------~~ 172 (210)
T cd00413 101 IDIEFLGR--DPTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITN------QV 172 (210)
T ss_pred EEEEeccc--CCCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECC------CC
Confidence 99999997 567788888876543 223345566667899999999999999999999999999864 27
Q ss_pred CCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEEEe
Q 042925 181 PSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 181 P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~v~ 221 (282)
|.+||+|+||+|.+++|+. ..+....|..|.|++|||.
T Consensus 173 p~~p~~i~ln~~~~~~~~~---~~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 173 PDDPMNIILNLWSDGGWWW---GGPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CCCCcEEEEEEEECCCCcc---cCCCCCCCcEEEEEEEEEC
Confidence 8999999999999999883 3455678999999999973
No 7
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=5.1e-32 Score=242.83 Aligned_cols=177 Identities=22% Similarity=0.401 Sum_probs=141.5
Q ss_pred eeeecCCCeEEeCCCceEEEEEeCC----------CcceEEE--ceeeeccEEEEEEEeeCCCCCceEeeEEEecCC---
Q 042925 36 HVTWGHDHALLLNQDREIQLTLDQK----------SGAGFES--KMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS--- 100 (282)
Q Consensus 36 ~~~w~~~~v~~~~~G~~l~L~l~~~----------sga~i~S--~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~--- 100 (282)
...+.++||.+. +| .|.|+.++. ++++|.| ++.|+||+||||||+|.+ +|++|||||++.+
T Consensus 32 ~~~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~ 107 (235)
T cd08023 32 YYTYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKY 107 (235)
T ss_pred EEeCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCC
Confidence 346688999874 55 788887543 2578999 788999999999999987 8999999999864
Q ss_pred ---CCCCceEE-EEcCCCCCCceEEeeEEecCcC----CeeeEEEccC-CCCCCcEEEEEEEccCeEEEEEcCeEEEEEE
Q 042925 101 ---SHHDEIDL-EFLGNNGPPYKLHTNLYINGQG----GREQQILLWF-DPTKDFHSYKILWNEHQIVFFVDNVPIRVYR 171 (282)
Q Consensus 101 ---~~~~EIDi-E~lGn~g~p~~~qtn~~~~g~g----~~e~~~~l~f-dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 171 (282)
+..+|||| |++|+ ++..+++++|..+.. ..+..+.+.. +..++||+|+|+|+|++|+|||||+++++++
T Consensus 108 ~~w~~~~EIDI~E~~g~--~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 108 VGWPASGEIDIMEYVGN--EPNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCCcceeEecCCC--CCCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 45789998 99998 566789999976643 2333455554 6789999999999999999999999999997
Q ss_pred ecCCCC-cCCC-CCceEEEEEeecCCCCCCCCCC-CCCCCCCeEEEEcEEEEe
Q 042925 172 NNIRKK-VSFP-SQPMHIFASIWHAEGWASDGRK-TDWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 172 ~~~~~g-~~~P-~~Pm~l~lnlW~gg~Wat~gg~-~d~~~~Pf~a~~~~~~v~ 221 (282)
+..... ..+| .+||+|+||++.+++|+ +. ..-...|..|.|++|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPPDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCCCCCCCCCCEEEEEEEEEC
Confidence 654211 1234 59999999999999998 33 345568999999999984
No 8
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2e-31 Score=243.22 Aligned_cols=177 Identities=19% Similarity=0.272 Sum_probs=133.5
Q ss_pred eecCCCeEEeCCCceEEEEEeCCC-----------cceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecCC-CCCCc
Q 042925 38 TWGHDHALLLNQDREIQLTLDQKS-----------GAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS-SHHDE 105 (282)
Q Consensus 38 ~w~~~~v~~~~~G~~l~L~l~~~s-----------ga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~-~~~~E 105 (282)
.+.++||.+. +| .|.|+..+.. +++|.|++.|+||+||||||+|.+ . .+|||||++.+ +.++|
T Consensus 54 ~y~~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gE 128 (258)
T cd02178 54 EFSADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTE 128 (258)
T ss_pred eEccCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCc
Confidence 4456788773 55 7999986542 588999999999999999999976 3 57999999874 57999
Q ss_pred eEE-EEcCC-CC--CCceEEeeEEecCcC-----Ce---eeEEEccCCCCCCcEEEEEEEc-cCeEEEEEcCeEEEEEEe
Q 042925 106 IDL-EFLGN-NG--PPYKLHTNLYINGQG-----GR---EQQILLWFDPTKDFHSYKILWN-EHQIVFFVDNVPIRVYRN 172 (282)
Q Consensus 106 IDi-E~lGn-~g--~p~~~qtn~~~~g~g-----~~---e~~~~l~fdps~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~ 172 (282)
||| |++|+ .+ .+..+++++|..+.+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++
T Consensus 129 IDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~ 208 (258)
T cd02178 129 IDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVEN 208 (258)
T ss_pred EEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcC
Confidence 997 99997 21 145688887642221 11 1234455667899999999999 999999999999999976
Q ss_pred cCCCCcCCCC-CceEEEEEeecCCCCCCCCCCC-CCCCCCeEEEEcEEEEe
Q 042925 173 NIRKKVSFPS-QPMHIFASIWHAEGWASDGRKT-DWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 173 ~~~~g~~~P~-~Pm~l~lnlW~gg~Wat~gg~~-d~~~~Pf~a~~~~~~v~ 221 (282)
.+. ....|. +||+|+||++.|| |+...+.. .-...|..|.||+|||.
T Consensus 209 ~~~-~~~~~f~~p~~liln~avg~-w~g~~~~~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 209 SEI-TDGTGFDQPMYIIIDTETYD-WRGEPTDEELADDSKNTFYVDYVRVY 257 (258)
T ss_pred ccc-CcCCcCCCCeEEEEEecccc-CCCCCCccccCCCCCCeEEEEEEEEe
Confidence 433 233454 9999999999988 98321122 22346999999999985
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=4.8e-29 Score=229.00 Aligned_cols=170 Identities=26% Similarity=0.347 Sum_probs=125.8
Q ss_pred CCCeEEeCCCceEEEEEeCC-------------------CcceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecC--
Q 042925 41 HDHALLLNQDREIQLTLDQK-------------------SGAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASR-- 99 (282)
Q Consensus 41 ~~~v~~~~~G~~l~L~l~~~-------------------sga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~-- 99 (282)
++||.+ .+| .|.|+..+. ++|+|.|+.+|+|||||||||+++. .+|+||||||+++
T Consensus 43 ~~Nv~v-~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~-~~G~wpAfW~~~~~~ 119 (269)
T cd02177 43 EKNVVI-SNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADI-FPGVCPSFWLYSDID 119 (269)
T ss_pred ccceEE-eCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCC-CCceEeEEEEeccCC
Confidence 467776 456 788888653 4578999999999999999998652 2899999999974
Q ss_pred -------CCCCCceEE-EEcCCC----CCCce----EEeeEEecCcCC--e--------eeEEEccCCCCCCcEEEEEEE
Q 042925 100 -------SSHHDEIDL-EFLGNN----GPPYK----LHTNLYINGQGG--R--------EQQILLWFDPTKDFHSYKILW 153 (282)
Q Consensus 100 -------~~~~~EIDi-E~lGn~----g~p~~----~qtn~~~~g~g~--~--------e~~~~l~fdps~dfHtY~i~W 153 (282)
.|.++|||| |.+|.. +++.. +|++++.++.+. + ...+.+++|++++||+|+|+|
T Consensus 120 ~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W 199 (269)
T cd02177 120 YSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNV 199 (269)
T ss_pred CCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEE
Confidence 156899999 777641 23333 444444454331 1 123556788999999999999
Q ss_pred ccCeEEEEEcCeEEEEEEecCCCCcCCCCCceEEEEEeecCC---------CCCCCCCCCCCCCCCeEEEEcEEEEe
Q 042925 154 NEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAE---------GWASDGRKTDWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 154 tp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg---------~Wat~gg~~d~~~~Pf~a~~~~~~v~ 221 (282)
+|++|+|||||++++++.+ .+...||.+.+++-... .|+ |...+.+..|-.|+||+|||.
T Consensus 200 ~~~~i~~yvDg~~~~~~~~------~~w~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 200 NQDEIIWYVDGVEVGRKPN------KYWHRPMNVTLSLGLRKPFVKFFDNKNNA--KAREKASDFPTSMYVDYVRVW 268 (269)
T ss_pred eCCEEEEEECCEEEEEEcC------CccccccEEeeccccCcchhhhhccccCC--CCCCccCcCCceEEEEEEEEe
Confidence 9999999999999998864 34568888888874322 254 344456678999999999985
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=4e-28 Score=225.49 Aligned_cols=181 Identities=20% Similarity=0.266 Sum_probs=126.4
Q ss_pred eeecCCCeEEeCCCceEEEEEeCC-------CcceEEE--ceeeeccEEEEEEEeeCC-CCCceEeeEEEecCC------
Q 042925 37 VTWGHDHALLLNQDREIQLTLDQK-------SGAGFES--KMRYGSGLFHIRMKIPDK-NSTGVLTSFYLASRS------ 100 (282)
Q Consensus 37 ~~w~~~~v~~~~~G~~l~L~l~~~-------sga~i~S--~~~f~YG~~eariKl~~g-~s~G~v~Af~l~s~~------ 100 (282)
..+.++|+.+ .+| .|.|+..+. ++++|.| |+.|+||+||||||+|.+ ...|+||||||+++.
T Consensus 36 q~Y~~~nv~v-~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~ 113 (295)
T cd02180 36 EWYDPDAVTT-ING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYL 113 (295)
T ss_pred EEecCcCeEe-cCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeeccccccccccc
Confidence 4567889887 456 788888653 4688999 577899999999999973 247999999999742
Q ss_pred -------CC------CCceEE-EEcCC-C-CCCce---EE----------------eeEEec------C-cCCeeeE---
Q 042925 101 -------SH------HDEIDL-EFLGN-N-GPPYK---LH----------------TNLYIN------G-QGGREQQ--- 135 (282)
Q Consensus 101 -------~~------~~EIDi-E~lGn-~-g~p~~---~q----------------tn~~~~------g-~g~~e~~--- 135 (282)
|. .+|||| |.+|. . +.... +| ..+|.. . .++..+.
T Consensus 114 ~~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 193 (295)
T cd02180 114 ATTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAIS 193 (295)
T ss_pred ccccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCccccccc
Confidence 32 489998 99985 1 11111 11 111211 0 0111010
Q ss_pred --EEccC----CCCCCcEEEEEEEcc-----CeEEEEEcCeEEEEEEecCC--C----CcCCCCCceEEEEEeecCCCCC
Q 042925 136 --ILLWF----DPTKDFHSYKILWNE-----HQIVFFVDNVPIRVYRNNIR--K----KVSFPSQPMHIFASIWHAEGWA 198 (282)
Q Consensus 136 --~~l~f----dps~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~--~----g~~~P~~Pm~l~lnlW~gg~Wa 198 (282)
..+.. ...++||+|+|+|+| +.|+|||||+++++++.... . ...+|.+||+|+||+..||+|+
T Consensus 194 ~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 194 CVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNFQ 273 (295)
T ss_pred cccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEeccccC
Confidence 11111 125789999999999 89999999999999875421 1 1246789999999999999998
Q ss_pred CCCCCCCCCCCCeEEEEcEEEEe
Q 042925 199 SDGRKTDWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 199 t~gg~~d~~~~Pf~a~~~~~~v~ 221 (282)
|.+.+-...|..|+||+|||+
T Consensus 274 --g~~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 --DIDWDELQFPATMRIDYVRVY 294 (295)
T ss_pred --CCCcccCCCCCEEEEEEEEEE
Confidence 323444567999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=8.4e-28 Score=219.50 Aligned_cols=181 Identities=14% Similarity=0.135 Sum_probs=125.9
Q ss_pred eecCCCeEEeCCCceEEEEEeCC-----CcceEEEceeee--c----cEEEEEEEeeCCC---CCceEeeEEEecCC---
Q 042925 38 TWGHDHALLLNQDREIQLTLDQK-----SGAGFESKMRYG--S----GLFHIRMKIPDKN---STGVLTSFYLASRS--- 100 (282)
Q Consensus 38 ~w~~~~v~~~~~G~~l~L~l~~~-----sga~i~S~~~f~--Y----G~~eariKl~~g~---s~G~v~Af~l~s~~--- 100 (282)
+++++|+.+..+| .|.|+..+. ++++|.|+.++. | |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4567899885466 788887654 358899986653 3 3899999999741 37999999999852
Q ss_pred -----CCCCceEE-EEcCCCCCCceEEeeEEecCcC--CeeeEEEc--cCCCCCCcEEEEEEEcc-----CeEEEEEcCe
Q 042925 101 -----SHHDEIDL-EFLGNNGPPYKLHTNLYINGQG--GREQQILL--WFDPTKDFHSYKILWNE-----HQIVFFVDNV 165 (282)
Q Consensus 101 -----~~~~EIDi-E~lGn~g~p~~~qtn~~~~g~g--~~e~~~~l--~fdps~dfHtY~i~Wtp-----~~I~fyVDG~ 165 (282)
|..+|||| |..|. ++...++.++....+ .++..... ...+.++||+|+|+|++ ++|+|||||+
T Consensus 121 ~~~~WP~~GEIDImE~~~~--~~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~ 198 (259)
T cd02182 121 NGTNWPACGELDIMENVNG--LSTGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGV 198 (259)
T ss_pred CCCCCCccceeeeeeccCC--CCceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCE
Confidence 55789998 99986 444444433322111 11111000 01235899999999997 9999999999
Q ss_pred EEEEEEecCCC---Cc-CCCCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEEEe
Q 042925 166 PIRVYRNNIRK---KV-SFPSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 166 ~vr~~~~~~~~---g~-~~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~v~ 221 (282)
++++++..... .. ..|.+||+|+||++.||+|+.......-...|..|.||+|||.
T Consensus 199 ~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 199 VYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWPGAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcCCCCCcccccCCCceEEEEEEEEe
Confidence 99998754211 11 2456999999999999999832111112346899999999986
No 12
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=9.3e-26 Score=214.14 Aligned_cols=177 Identities=23% Similarity=0.439 Sum_probs=142.0
Q ss_pred CceeeecCCCeEEeCCCceEEEEEeCC-------CcceEEEcee--eeccEEEEEEEeeCCCCCceEeeEEEecC----C
Q 042925 34 NYHVTWGHDHALLLNQDREIQLTLDQK-------SGAGFESKMR--YGSGLFHIRMKIPDKNSTGVLTSFYLASR----S 100 (282)
Q Consensus 34 ~~~~~w~~~~v~~~~~G~~l~L~l~~~-------sga~i~S~~~--f~YG~~eariKl~~g~s~G~v~Af~l~s~----~ 100 (282)
..++.|..+++.+..+| .|.|.+++. ++++++|..+ |+||++|+|||++.+ .|+|+||||+++ +
T Consensus 71 ~~~~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg 147 (355)
T COG2273 71 TKNLTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDG 147 (355)
T ss_pred ccccceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCC
Confidence 45568888888886655 888888753 5789999888 899999999999976 999999999985 3
Q ss_pred CCCCceEEEEcCCCCCCceEEeeEEecCcCCeeeEEEccC-CCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcC
Q 042925 101 SHHDEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLWF-DPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVS 179 (282)
Q Consensus 101 ~~~~EIDiE~lGn~g~p~~~qtn~~~~g~g~~e~~~~l~f-dps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~ 179 (282)
..++|||||+||+...+..+|+|.+.++.++.+....+.+ +..++||+|.++|.++.|+|||||++++++... ..
T Consensus 148 ~wp~e~d~e~lgg~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~ 223 (355)
T COG2273 148 GWPDEIDIEDLGGQSTNTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DY 223 (355)
T ss_pred CCCcceeeeeecCCCcccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----cc
Confidence 4579999999998222346999999999888777767777 888999999999999999999999999998753 35
Q ss_pred CCCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcE
Q 042925 180 FPSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQD 217 (282)
Q Consensus 180 ~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~ 217 (282)
.|+.||++++|+|.++.+.+.-+.......|..+.+..
T Consensus 224 ~~~~p~y~~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (355)
T COG2273 224 IPQIPFYVLVNLWMGGYAGGPPGEALSAGSPLNIDYYR 261 (355)
T ss_pred CcCCcceeEEeecccCccCCCccccccCCcceEeeeee
Confidence 69999999999999987653324455444555444444
No 13
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.94 E-value=1.3e-25 Score=211.84 Aligned_cols=135 Identities=20% Similarity=0.259 Sum_probs=100.0
Q ss_pred cceEEE--ceeeeccEEEEEEEeeCCCCCceEeeEEEecCC------CCCCceEE-EEcCC-CCCC-------ceEEeeE
Q 042925 62 GAGFES--KMRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS------SHHDEIDL-EFLGN-NGPP-------YKLHTNL 124 (282)
Q Consensus 62 ga~i~S--~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~------~~~~EIDi-E~lGn-~g~p-------~~~qtn~ 124 (282)
.|+|.| ++.|+|||||+|||+|.| .|+||||||++.+ |..+|||| |..|+ ...+ ..++.++
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 577888 467899999999999998 8999999999863 56899998 99998 2111 1345555
Q ss_pred EecCc-C-C--eee---EEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecC-------------------CCCc
Q 042925 125 YINGQ-G-G--REQ---QILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNI-------------------RKKV 178 (282)
Q Consensus 125 ~~~g~-g-~--~e~---~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~g~ 178 (282)
|.... . + +.. ......+.+++||+|+|+|+|++|+|||||+++++++... ..+.
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 53221 1 1 111 1112234578899999999999999999999999987521 0123
Q ss_pred CCCC-CceEEEEEeecCCCCC
Q 042925 179 SFPS-QPMHIFASIWHAEGWA 198 (282)
Q Consensus 179 ~~P~-~Pm~l~lnlW~gg~Wa 198 (282)
..|+ +|++|+||+..||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 4577 9999999999999886
No 14
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.93 E-value=2.5e-25 Score=209.15 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=94.3
Q ss_pred cceEEEc--eeeeccEEEEEEEeeCCCCCceEeeEEEecCC-------CCCCceEE-EEcCCCCCC------ceEEeeEE
Q 042925 62 GAGFESK--MRYGSGLFHIRMKIPDKNSTGVLTSFYLASRS-------SHHDEIDL-EFLGNNGPP------YKLHTNLY 125 (282)
Q Consensus 62 ga~i~S~--~~f~YG~~eariKl~~g~s~G~v~Af~l~s~~-------~~~~EIDi-E~lGn~g~p------~~~qtn~~ 125 (282)
.|+|.|+ +.|+|||+|+|||||.| .|+||||||++.+ |..+|||| |..|| .+ .+..+.+|
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn--~~~~~~g~~~~~~~l~ 173 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGN--AVLRADGTDIGGKKLY 173 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCC--CccccCCceeccceEE
Confidence 4788885 66899999999999998 8999999999863 46799998 99998 21 11122222
Q ss_pred ecCc----C-Ceee---EEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEecCC----------------CCcCCC
Q 042925 126 INGQ----G-GREQ---QILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIR----------------KKVSFP 181 (282)
Q Consensus 126 ~~g~----g-~~e~---~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~g~~~P 181 (282)
.... . .+.. ......+.+++||+|+|+|+|++|+|||||++++++..... .....|
T Consensus 174 ~g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aP 253 (321)
T cd02179 174 GGPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAP 253 (321)
T ss_pred cccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCC
Confidence 2111 1 1110 11112345789999999999999999999999999875321 112357
Q ss_pred C-CceEEEEEeecCC
Q 042925 182 S-QPMHIFASIWHAE 195 (282)
Q Consensus 182 ~-~Pm~l~lnlW~gg 195 (282)
. +|++|+||+++||
T Consensus 254 FD~~FyliLNlAVGG 268 (321)
T cd02179 254 FDKEFYLSLGVGVGG 268 (321)
T ss_pred CCCCeEEEEEEEecC
Confidence 7 9999999999987
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.74 E-value=1.2e-18 Score=121.65 Aligned_cols=45 Identities=40% Similarity=0.843 Sum_probs=38.6
Q ss_pred CCCcccccccccCCCHHHHHHHHHhhccCeEEeccCCCC--CCC-CCCC
Q 042925 235 SPKFWWNAEKYRKLNPDQEREYRNVRKMHLVYDYCSSKS--SSH-YPEC 280 (282)
Q Consensus 235 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~YdYC~d~~--~~~-p~EC 280 (282)
+...||+++.++ |++.|+++|+|||+||||||||+|++ |.+ |+||
T Consensus 4 ~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 4 SSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 356799998888 99999999999999999999999999 877 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.58 E-value=3.8e-14 Score=138.90 Aligned_cols=87 Identities=20% Similarity=0.339 Sum_probs=68.0
Q ss_pred CCCcEEEEEEEccC-----eEEEEEcCeEEEEEEecCC------CCcCCCCCceEEEEEeecCCCCCCCCCCCCCCC--C
Q 042925 143 TKDFHSYKILWNEH-----QIVFFVDNVPIRVYRNNIR------KKVSFPSQPMHIFASIWHAEGWASDGRKTDWHQ--A 209 (282)
Q Consensus 143 s~dfHtY~i~Wtp~-----~I~fyVDG~~vr~~~~~~~------~g~~~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~--~ 209 (282)
..+||+|+|||.|+ .|+|+|||+++.++....- ..-.+|..||+|++|+-...+|+ .+||.. .
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~----~vd~~~L~F 440 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG----YVDWNHLCF 440 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCcCCceeeeccccccccC----ccccccccc
Confidence 37899999999874 9999999999999864421 11368999999999999999997 678865 6
Q ss_pred CeEEEEcEEEEeeeecCCCCCccccC
Q 042925 210 PFHAHYQDFHVDGCVLQDHNIRECHS 235 (282)
Q Consensus 210 Pf~a~~~~~~v~~c~~~~~~~~~c~~ 235 (282)
|.+|.||+|||+. ......-.|.+
T Consensus 441 P~~M~IDYVRVYQ--~~~~~~vgCDP 464 (504)
T PF03935_consen 441 PATMRIDYVRVYQ--PEDAINVGCDP 464 (504)
T ss_pred cceEEEeEEEEec--cCCCCeeeeCC
Confidence 7899999999964 22222356864
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.34 E-value=1.2e-11 Score=114.65 Aligned_cols=141 Identities=21% Similarity=0.352 Sum_probs=94.6
Q ss_pred eEEEEEeCCC---------cceEEEceeeeccEEEEEE-EeeCCCCCceEeeEEEecCC-CCCCceEE-EEcCCCCCCce
Q 042925 52 EIQLTLDQKS---------GAGFESKMRYGSGLFHIRM-KIPDKNSTGVLTSFYLASRS-SHHDEIDL-EFLGNNGPPYK 119 (282)
Q Consensus 52 ~l~L~l~~~s---------ga~i~S~~~f~YG~~eari-Kl~~g~s~G~v~Af~l~s~~-~~~~EIDi-E~lGn~g~p~~ 119 (282)
.|.|.+|+.+ .++|.|+++|.+|++|+|+ |+|.+ .|+||||||++.+ |..+|||| |.++. +. .
T Consensus 50 ~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~--~~-~ 124 (293)
T cd02181 50 NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNL--QT-S 124 (293)
T ss_pred eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCC--CC-c
Confidence 6888887542 4789999999999999997 99987 8999999999876 78899998 99985 22 2
Q ss_pred EEeeEEecCc----------C-------------Ceee--------EEEccCCCCCCcEEEEEEEccCeEEEEE---cCe
Q 042925 120 LHTNLYINGQ----------G-------------GREQ--------QILLWFDPTKDFHSYKILWNEHQIVFFV---DNV 165 (282)
Q Consensus 120 ~qtn~~~~g~----------g-------------~~e~--------~~~l~fdps~dfHtY~i~Wtp~~I~fyV---DG~ 165 (282)
.+..+|+.+. + +... .+-..|+ ..+=-.|.++|+.+.|+.+. +.+
T Consensus 125 n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~i 203 (293)
T cd02181 125 NQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSI 203 (293)
T ss_pred eEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCC
Confidence 3333443210 0 0000 1112232 34456999999999997665 444
Q ss_pred EEEEEEecCC------CCcCCCC---------CceEEEEEeecCCCCC
Q 042925 166 PIRVYRNNIR------KKVSFPS---------QPMHIFASIWHAEGWA 198 (282)
Q Consensus 166 ~vr~~~~~~~------~g~~~P~---------~Pm~l~lnlW~gg~Wa 198 (282)
|-.....+.. +-..||. ++++|++|+-.=|+||
T Consensus 204 P~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 204 PADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred CcccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 4322111100 1134554 8999999999999999
No 18
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=95.82 E-value=0.086 Score=46.21 Aligned_cols=96 Identities=17% Similarity=0.319 Sum_probs=54.6
Q ss_pred EEEEeCCCcceEEEceee---ecc-EEEEEEEeeCCCCCceEeeEEEecCC--------CCCCceEEEEcCCCCCCceEE
Q 042925 54 QLTLDQKSGAGFESKMRY---GSG-LFHIRMKIPDKNSTGVLTSFYLASRS--------SHHDEIDLEFLGNNGPPYKLH 121 (282)
Q Consensus 54 ~L~l~~~sga~i~S~~~f---~YG-~~eariKl~~g~s~G~v~Af~l~s~~--------~~~~EIDiE~lGn~g~p~~~q 121 (282)
.+.+.-.+|+++.|++.- .+| +....||+..| |..+-.|.-... ...+++=-|+-|.
T Consensus 10 ~~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~~r~l~~lsvn~sG~LvA~L~g~-------- 78 (198)
T PF09264_consen 10 SWQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGSKRYLPILSVNESGSLVAELEGQ-------- 78 (198)
T ss_dssp -EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESSEEEEEEEEE-TTS-EEEEETTS--------
T ss_pred eEEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCceEEEEEEEEcCCCCEEEEEecC--------
Confidence 344445678899887543 577 79999999876 444443331110 0112222222222
Q ss_pred eeEEecCcCCeeeEEEcc-CCCCCCcEEEEEEEcc--CeEEEEEcCeEEEEE
Q 042925 122 TNLYINGQGGREQQILLW-FDPTKDFHSYKILWNE--HQIVFFVDNVPIRVY 170 (282)
Q Consensus 122 tn~~~~g~g~~e~~~~l~-fdps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~ 170 (282)
+.+ ..+.+. +| -.+||.|.|.-.| ..-.|||||++|++.
T Consensus 79 --------ss~-~~~~~~~~d-i~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 79 --------SSN-TLLATTGAD-IHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp ---------S--EEEE-CHHH-HCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred --------CCc-EEEeccccc-ccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 111 112222 11 2589999999988 899999999999985
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=93.88 E-value=1.4 Score=34.92 Aligned_cols=65 Identities=11% Similarity=0.229 Sum_probs=39.1
Q ss_pred CCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCCCCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEEEee
Q 042925 143 TKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFHVDG 222 (282)
Q Consensus 143 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~v~~ 222 (282)
...||..++.|...++.+||||+++.+...... ....+..+. . .|+.. ....+|...+++++|..
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~~~~~--~----iG~~~--------~~~~~~~g~i~~~~i~~ 148 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNSNGPL--F----IGGSG--------GGSSPFNGYIDDLRIYN 148 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTSCCEE--E----ESS-S--------TT--B-EEEEEEEEEES
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCCcceE--E----EeecC--------CCCCceEEEEEEEEEEC
Confidence 588999999999999999999999865432111 001111222 1 22221 23578999999999964
No 20
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=91.84 E-value=5.9 Score=32.08 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=44.6
Q ss_pred CCCCcEEEEEEEcc--CeEEEEEcCeEEEEEEecCCCCcCCC-CCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEE
Q 042925 142 PTKDFHSYKILWNE--HQIVFFVDNVPIRVYRNNIRKKVSFP-SQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDF 218 (282)
Q Consensus 142 ps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P-~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~ 218 (282)
+...||...+.++. .+|++||||+++.+.... ..+ ..|+.|-.....++. ...+|.-.|+.+
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~~~~----------~~~~f~G~Idev 123 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILLGGA----------GGENFSGRLDEV 123 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccCCCC----------CCCCceEEeeEE
Confidence 44789999999998 899999999998654321 112 244433211111111 124888999999
Q ss_pred EEeeeec
Q 042925 219 HVDGCVL 225 (282)
Q Consensus 219 ~v~~c~~ 225 (282)
+|..++-
T Consensus 124 riy~~aL 130 (133)
T smart00560 124 RVYNRAL 130 (133)
T ss_pred EEecccc
Confidence 9987653
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=91.66 E-value=3.8 Score=35.39 Aligned_cols=88 Identities=20% Similarity=0.290 Sum_probs=51.1
Q ss_pred EEEEEEEeeCCCCCceEeeEEEecCCCCCCceEEEEcCCCCCCceEEeeEEecCcCCeeeEEEcc-C-CCCCCcEEEEEE
Q 042925 75 LFHIRMKIPDKNSTGVLTSFYLASRSSHHDEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLW-F-DPTKDFHSYKIL 152 (282)
Q Consensus 75 ~~eariKl~~g~s~G~v~Af~l~s~~~~~~EIDiE~lGn~g~p~~~qtn~~~~g~g~~e~~~~l~-f-dps~dfHtY~i~ 152 (282)
.+.+.+|..+. ..|++-++.-. + ...++-++.-|. ++ .+. ++..+..+..+..... . -....||.-++.
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~--~~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal~ 125 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGR--AN-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLALS 125 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCC--cc-EEE--EEECCCCCcEEEEeecCCccccCCceEEEEE
Confidence 46677777643 45665555432 1 234555565554 22 233 2322333333222111 1 124689999999
Q ss_pred EccCeEEEEEcCeEEEEEE
Q 042925 153 WNEHQIVFFVDNVPIRVYR 171 (282)
Q Consensus 153 Wtp~~I~fyVDG~~vr~~~ 171 (282)
+..++|++|||++++.+..
T Consensus 126 V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 126 VSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EeCCEEEEEECCcccccee
Confidence 9999999999999987753
No 22
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=87.67 E-value=18 Score=31.52 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=43.2
Q ss_pred CCCCcEEEEEEEc--cCeEEEEEcCeEEEEEEecCCCCcCCCCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEE
Q 042925 142 PTKDFHSYKILWN--EHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFH 219 (282)
Q Consensus 142 ps~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~ 219 (282)
....||...+.|+ ..++.+||||+++.+-. -..+..++. ...+.|.--. ..+ |+..+. ...|.-.+++|+
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~-~g~l~lG~~q-~~~---gg~~~~-~~~f~G~I~~v~ 159 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP-GGSIILGQEQ-DSY---GGGFDA-TQSFVGEISDVN 159 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC-CCeEEEeecc-cCC---CCCCCC-CcceEEEEceeE
Confidence 4678999999998 56799999999885422 111223332 2233433210 111 233443 347888999998
Q ss_pred Eee
Q 042925 220 VDG 222 (282)
Q Consensus 220 v~~ 222 (282)
|..
T Consensus 160 iw~ 162 (201)
T cd00152 160 MWD 162 (201)
T ss_pred EEc
Confidence 853
No 23
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=87.59 E-value=19 Score=31.62 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=64.7
Q ss_pred EEEEEEEeeCCCCCceEeeEEEecCCCCCCceEEEEcCCCCCCceEEeeEEecCcCCeeeEEEccCCCCCCcEEEEEEEc
Q 042925 75 LFHIRMKIPDKNSTGVLTSFYLASRSSHHDEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLWFDPTKDFHSYKILWN 154 (282)
Q Consensus 75 ~~eariKl~~g~s~G~v~Af~l~s~~~~~~EIDiE~lGn~g~p~~~qtn~~~~g~g~~e~~~~l~fdps~dfHtY~i~Wt 154 (282)
++.+.+|+... . .-.++|.+......+|+-+ +..+.+ +..++.++. ....... -....||...+.|+
T Consensus 34 Tvc~W~k~~~~--~-~~~~ifSy~~~~~~ne~~~-~~~~~~-----~~~l~i~g~---~~~~~~~-~~~g~W~hvc~tw~ 100 (206)
T smart00159 34 TVCLWFYSDLS--P-RGYSLFSYATKGQDNELLL-YKEKQG-----EYSLYIGGK---KVQFPVP-ESDGKWHHICTTWE 100 (206)
T ss_pred EEEEEEEecCC--C-CceEEEEEeCCCCCCeEEE-EEcCCc-----EEEEEEcCe---EEEeccc-ccCCceEEEEEEEE
Confidence 46677777643 1 2334556654433455432 222211 122333332 2222221 23578999999997
Q ss_pred --cCeEEEEEcCeEEEEEEecCCCCcCCCCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEEEee
Q 042925 155 --EHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFHVDG 222 (282)
Q Consensus 155 --p~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~v~~ 222 (282)
..++.+||||+++.. ..-..+..++ .+-.+.++. .-+.+ ||..+. ...|.-.+++|+|..
T Consensus 101 ~~~g~~~lyvnG~~~~~--~~~~~g~~i~-~~G~lvlGq-~qd~~---gg~f~~-~~~f~G~i~~v~iw~ 162 (206)
T smart00159 101 SSSGIAELWVDGKPGVR--KGLAKGYTVK-PGGSIILGQ-EQDSY---GGGFDA-TQSFVGEIGDLNMWD 162 (206)
T ss_pred CCCCcEEEEECCEEccc--ccccCCcEEC-CCCEEEEEe-cccCC---CCCCCC-CcceeEEEeeeEEec
Confidence 567999999998621 1111122233 223344443 11222 244443 346888898988854
No 24
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=82.93 E-value=22 Score=28.34 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=46.2
Q ss_pred ccEEEEEEEeeCCCCCceEeeEEEecCCCCCCceEEEEcCCCCCCceEEeeEEecCcCCeeeEEEccC-CCCCCcEEEEE
Q 042925 73 SGLFHIRMKIPDKNSTGVLTSFYLASRSSHHDEIDLEFLGNNGPPYKLHTNLYINGQGGREQQILLWF-DPTKDFHSYKI 151 (282)
Q Consensus 73 YG~~eariKl~~g~s~G~v~Af~l~s~~~~~~EIDiE~lGn~g~p~~~qtn~~~~g~g~~e~~~~l~f-dps~dfHtY~i 151 (282)
...+++++|.... .|++ |++.+. ...+-+-+|... | .+...+-. + .....+.... -....||...|
T Consensus 21 ~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~--g---~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v~i 87 (151)
T cd00110 21 RLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED--G---RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSVSV 87 (151)
T ss_pred eeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC--C---EEEEEEcC-C--cccEEEEccCccCCCCEEEEEE
Confidence 4457777776543 5554 222222 134556666653 2 23322221 1 1222222221 12467999999
Q ss_pred EEccCeEEEEEcCeEEEE
Q 042925 152 LWNEHQIVFFVDNVPIRV 169 (282)
Q Consensus 152 ~Wtp~~I~fyVDG~~vr~ 169 (282)
.+....++.+|||.++.+
T Consensus 88 ~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 88 ERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EECCCEEEEEECCccEEe
Confidence 999999999999985433
No 25
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=82.31 E-value=3.3 Score=34.88 Aligned_cols=106 Identities=15% Similarity=0.298 Sum_probs=55.4
Q ss_pred cceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecC--C-----CCCCceEEEEcCCC-CCCceEEeeEEecCcCCee
Q 042925 62 GAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASR--S-----SHHDEIDLEFLGNN-GPPYKLHTNLYINGQGGRE 133 (282)
Q Consensus 62 ga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~--~-----~~~~EIDiE~lGn~-g~p~~~qtn~~~~g~g~~e 133 (282)
++-|.++..|.=..+++.+|+.++ | -.++++-.. + ...-|+.|.--+.. ..+. ....++........
T Consensus 43 ~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~~~-~~G~~~~~~~~~~~ 117 (185)
T PF06439_consen 43 GGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGLPN-STGSLYDEPPWQLE 117 (185)
T ss_dssp S--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTTTT-STTSBTTTB-TCB-
T ss_pred cceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCCCC-ccceEEEecccccc
Confidence 466888888887799999998543 2 445554433 1 23345555332110 0000 00000000000000
Q ss_pred eEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEEEEec
Q 042925 134 QQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRVYRNN 173 (282)
Q Consensus 134 ~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 173 (282)
.... ...+..+||++.|.-..++|+.+|||++|.++...
T Consensus 118 ~~~~-~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 118 PSVN-VAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp SSS---S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred cccc-ccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0001 11246899999999999999999999999888754
No 26
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=79.59 E-value=8.3 Score=35.14 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=46.8
Q ss_pred EEEEEEeeCCC-----CCceEeeEEEecCC----------------CCCCceEE-EEcCCCCCCceEEeeEEe-cCc---
Q 042925 76 FHIRMKIPDKN-----STGVLTSFYLASRS----------------SHHDEIDL-EFLGNNGPPYKLHTNLYI-NGQ--- 129 (282)
Q Consensus 76 ~eariKl~~g~-----s~G~v~Af~l~s~~----------------~~~~EIDi-E~lGn~g~p~~~qtn~~~-~g~--- 129 (282)
|-.+.++|... ...=.||+||++.. ..++|+|| |.|.. |+. .+.+.+|. +|.
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~-g~~-k~~St~H~~qG~~~~ 180 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNS-GDD-KLKSTFHDYQGTDDI 180 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccC-CCc-eeEEEEecccCcccc
Confidence 66677777731 23458999998642 25899997 99976 343 56666665 442
Q ss_pred ---CCeeeEEEccCCCCCCcEEEEEEEcc
Q 042925 130 ---GGREQQILLWFDPTKDFHSYKILWNE 155 (282)
Q Consensus 130 ---g~~e~~~~l~fdps~dfHtY~i~Wtp 155 (282)
++...-+. .|++..-++++.++.
T Consensus 181 ~~g~G~~~yf~---RPt~~~~k~aVifd~ 206 (235)
T PF10287_consen 181 NGGGGSSDYFK---RPTSGTMKVAVIFDS 206 (235)
T ss_pred CCCCCCCCccc---CCCCCCeEEEEEEcC
Confidence 11111111 467788888888864
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=77.63 E-value=48 Score=28.96 Aligned_cols=75 Identities=13% Similarity=0.318 Sum_probs=45.6
Q ss_pred EEccCCCCCCcEEEEE--EEcc---CeEEEEEcCeEEEEEEecCCCCcCCCC-CceEEEEEeecCCCCCCCCCCCCCCCC
Q 042925 136 ILLWFDPTKDFHSYKI--LWNE---HQIVFFVDNVPIRVYRNNIRKKVSFPS-QPMHIFASIWHAEGWASDGRKTDWHQA 209 (282)
Q Consensus 136 ~~l~fdps~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~g~~~P~-~Pm~l~lnlW~gg~Wat~gg~~d~~~~ 209 (282)
..+...+...||.+.| .|++ ..|..++||+++..+... ..++. ...++-+.|.-.+ |.......+-
T Consensus 144 ~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~----~~~~~~~~~y~K~GiYr~~-~~~~~~~~~~--- 215 (224)
T PF14099_consen 144 VDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP----TGYNDDRGPYFKFGIYRSG-WKNDPNESDT--- 215 (224)
T ss_dssp EECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE----ECECCSSEEEEEEEEEEHC-CHHHSC--SS---
T ss_pred ecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC----ceeCCCCcceeEEEEECCC-CcCCCccccc---
Confidence 3444344588998876 5875 889999999999887652 23444 6778888887643 2211111111
Q ss_pred CeEEEEcEEEE
Q 042925 210 PFHAHYQDFHV 220 (282)
Q Consensus 210 Pf~a~~~~~~v 220 (282)
...|++|++
T Consensus 216 --~vy~D~v~~ 224 (224)
T PF14099_consen 216 --QVYYDNVRI 224 (224)
T ss_dssp ---EEEEEEE-
T ss_pred --EEEeccccC
Confidence 178888874
No 28
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=68.85 E-value=49 Score=28.97 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=39.0
Q ss_pred CCCCcEEEEEEEcc--CeEEEEEcCeEEEEEEecCCCCcCCCCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEE
Q 042925 142 PTKDFHSYKILWNE--HQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFH 219 (282)
Q Consensus 142 ps~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~ 219 (282)
....||.+-+-|+. ..+.+||||+....- .-..|..+|... .++|..=- +. -||..| ....|.-.+.+|+
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~--~~~~g~~i~~gG-~~vlGQeQ-d~---~gG~fd-~~q~F~G~i~~~~ 153 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSST--GLATGHSIPGGG-TLVLGQEQ-DS---YGGGFD-ESQAFVGEISDFN 153 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEE--ESSTT--B-SSE-EEEESS-B-SB---TTBTCS-GGGB--EEEEEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEecccc--cccCCceECCCC-EEEECccc-cc---cCCCcC-CccEeeEEEeceE
Confidence 35789999999974 899999999954332 122344454333 24444311 11 134444 2357888888888
Q ss_pred Ee
Q 042925 220 VD 221 (282)
Q Consensus 220 v~ 221 (282)
+-
T Consensus 154 iW 155 (195)
T PF00354_consen 154 IW 155 (195)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 29
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=61.61 E-value=36 Score=35.63 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=39.1
Q ss_pred CCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCCCCCceEEEEEeecCCCCC
Q 042925 143 TKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWA 198 (282)
Q Consensus 143 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wa 198 (282)
.++||.|.+.-.--.++.||||+-..-+.- -.+||-.|.++-..|=.|--|.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwplHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWPLHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCcee----ccCCccCcccccceeEEeeecc
Confidence 578999999998666999999986533211 2468888888777777777786
No 30
>smart00282 LamG Laminin G domain.
Probab=54.18 E-value=64 Score=25.45 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.2
Q ss_pred CCCcEEEEEEEccCeEEEEEcCeEEEE
Q 042925 143 TKDFHSYKILWNEHQIVFFVDNVPIRV 169 (282)
Q Consensus 143 s~dfHtY~i~Wtp~~I~fyVDG~~vr~ 169 (282)
...||.-.|.-....+..+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 468999999999999999999976543
No 31
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=45.38 E-value=1.3e+02 Score=22.73 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCCCCCceEEEEEeecCCCCCCCCCCCCCCCCCeEEEEcEEEEe
Q 042925 143 TKDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPSQPMHIFASIWHAEGWASDGRKTDWHQAPFHAHYQDFHVD 221 (282)
Q Consensus 143 s~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~Pm~l~lnlW~gg~Wat~gg~~d~~~~Pf~a~~~~~~v~ 221 (282)
...||.-.|.-....++..||+........... ...-+...-.++.||.-........-....|.--+++++|+
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~-----~~~~~~~~~~l~iGg~~~~~~~~~~~~~~~f~Gci~~l~vn 126 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS-----SSDSLDPDGSLYIGGLPESNQPSGSVDTPGFVGCIRDLRVN 126 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST-----THHCBESEEEEEESSTTTTCTCTTSSTTSB-EEEEEEEEET
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc-----ceecccCCCCEEEecccCccccccccCCCCcEEEcCeEEEC
Confidence 567999999999999999999999877653321 00022234446777764322111111155677788887774
No 32
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=38.93 E-value=3e+02 Score=24.91 Aligned_cols=58 Identities=19% Similarity=0.408 Sum_probs=37.2
Q ss_pred CCcEEEEEEEccCeEEEEEcCeEEEEEEecCCCCcCCCC-CceEEEEEeecCCCCCCCCCCCCCCC-CCeEEEEcEEEE
Q 042925 144 KDFHSYKILWNEHQIVFFVDNVPIRVYRNNIRKKVSFPS-QPMHIFASIWHAEGWASDGRKTDWHQ-APFHAHYQDFHV 220 (282)
Q Consensus 144 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~-~Pm~l~lnlW~gg~Wat~gg~~d~~~-~Pf~a~~~~~~v 220 (282)
..++.-.|.-....|.|.|||.+|..++.... ...|. . +|+|-..+ +|..|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPvl~-----------------~G~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPVLR-----------------GGRIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBEEEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCccc-----------------CcEeeeeccchhhhhhccccC
Confidence 36777788889999999999999988865421 11231 1 13444333 799999999986
No 33
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=29.10 E-value=99 Score=26.52 Aligned_cols=35 Identities=26% Similarity=0.548 Sum_probs=27.5
Q ss_pred eEEEccCCCCCCcEEEEEEEccCeEEEEEcCeEEEE
Q 042925 134 QQILLWFDPTKDFHSYKILWNEHQIVFFVDNVPIRV 169 (282)
Q Consensus 134 ~~~~l~fdps~dfHtY~i~Wtp~~I~fyVDG~~vr~ 169 (282)
+++++|- .+.|=|.|+|.-..+.+..+++|..+++
T Consensus 93 k~~~~W~-~t~dg~~~RivL~kdtm~~w~NG~~l~T 127 (187)
T KOG4352|consen 93 KQYRLWL-YTDDGQEYRIVLKKDTMSLWVNGDELRT 127 (187)
T ss_pred hheeEEE-EecCCceEEEEEeccceeeEEcCccccc
Confidence 4556663 2344499999999999999999999876
No 34
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=27.01 E-value=1e+02 Score=24.46 Aligned_cols=28 Identities=7% Similarity=0.215 Sum_probs=23.6
Q ss_pred CCCCcEEEEEEEccCeEEEEEcCeEEEEE
Q 042925 142 PTKDFHSYKILWNEHQIVFFVDNVPIRVY 170 (282)
Q Consensus 142 ps~dfHtY~i~Wtp~~I~fyVDG~~vr~~ 170 (282)
+.++-|++.+. ..+.++++|||+++-..
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~ 84 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDN 84 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEEC
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcC
Confidence 46788899888 88899999999999554
No 35
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=26.77 E-value=76 Score=23.71 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=22.3
Q ss_pred CeEEEEEcCeEEEEEEecCCCCcCCCC-CceEEEEEeec
Q 042925 156 HQIVFFVDNVPIRVYRNNIRKKVSFPS-QPMHIFASIWH 193 (282)
Q Consensus 156 ~~I~fyVDG~~vr~~~~~~~~g~~~P~-~Pm~l~lnlW~ 193 (282)
..+.|||||+++.+-.... ...++- .|..-.|.+=+
T Consensus 43 ~~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 43 GPVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred CcEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEEc
Confidence 3788999999995543321 223443 66766666633
No 36
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=25.13 E-value=3.2e+02 Score=21.04 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCcEEEEEEEccCeEEEEEcCe--EEEEEEecCCCCcCCCCCceEEEEEeec
Q 042925 143 TKDFHSYKILWNEHQIVFFVDNV--PIRVYRNNIRKKVSFPSQPMHIFASIWH 193 (282)
Q Consensus 143 s~dfHtY~i~Wtp~~I~fyVDG~--~vr~~~~~~~~g~~~P~~Pm~l~lnlW~ 193 (282)
..+|..|.|.|..+.|.+..||. |+-+++.. -|....++=++-|.
T Consensus 51 ~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp------~~~~v~yvGft~w~ 97 (102)
T PF12248_consen 51 PSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDP------EPIPVNYVGFTGWG 97 (102)
T ss_pred CCccEEEEEEECCCEEEEEECCCccEEEEEECC------CCCcccEEEEecCC
Confidence 57899999999999999999987 66666532 14455566666665
No 37
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=24.62 E-value=6.5e+02 Score=24.39 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=19.9
Q ss_pred cEEEEEEEccCe-EEEEEcCeEEEE
Q 042925 146 FHSYKILWNEHQ-IVFFVDNVPIRV 169 (282)
Q Consensus 146 fHtY~i~Wtp~~-I~fyVDG~~vr~ 169 (282)
-|.|++.-.|+. -...|||+.+-+
T Consensus 170 tHlYTlIlRPd~TYeVkIDn~~~es 194 (406)
T KOG0674|consen 170 THLYTLILRPDATYEVKIDNQQVES 194 (406)
T ss_pred ceeEEEEecCCCeeEEEEccccccc
Confidence 699999999875 478899998755
No 38
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=23.98 E-value=1.2e+02 Score=23.18 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=27.0
Q ss_pred CCCeEEeCCCceEEEEEeCCCcceEEEceeeeccEEEEEEEeeCC
Q 042925 41 HDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKIPDK 85 (282)
Q Consensus 41 ~~~v~~~~~G~~l~L~l~~~sga~i~S~~~f~YG~~eariKl~~g 85 (282)
++.+.+.-.++.|+++-.+..-.+-.....+.||.|+=++.||.+
T Consensus 21 kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred HHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 445555545556777765432111011235799999999999975
No 39
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=23.67 E-value=1.3e+02 Score=22.18 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=27.6
Q ss_pred cCCCeEEeCCCceEEEEEeCCCcceEEEceeeeccEEEEEEEeeCC
Q 042925 40 GHDHALLLNQDREIQLTLDQKSGAGFESKMRYGSGLFHIRMKIPDK 85 (282)
Q Consensus 40 ~~~~v~~~~~G~~l~L~l~~~sga~i~S~~~f~YG~~eariKl~~g 85 (282)
.++++++.-+++.|.++-.+..... ...+.+|+|+=+++||..
T Consensus 19 ~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 19 KPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 3455665556667777765432211 345678999999999875
No 40
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=3.8e+02 Score=24.11 Aligned_cols=55 Identities=18% Similarity=0.356 Sum_probs=41.6
Q ss_pred eEEEEEeCCCcceEEEceeeeccEEEEEEEeeCCCCCceEeeEEEecC-C--C-CCCceEEEEc
Q 042925 52 EIQLTLDQKSGAGFESKMRYGSGLFHIRMKIPDKNSTGVLTSFYLASR-S--S-HHDEIDLEFL 111 (282)
Q Consensus 52 ~l~L~l~~~sga~i~S~~~f~YG~~eariKl~~g~s~G~v~Af~l~s~-~--~-~~~EIDiE~l 111 (282)
.+.+.++.+.|..+.++..+.-|+|...+.- .|+.-+-|..-. + | ...+||+++-
T Consensus 61 ~~~~~Vts~~G~~~~~~env~~gqFaFta~e-----~~~y~~Cf~~~~~~~~p~~~~~I~ld~k 119 (210)
T KOG1691|consen 61 KLSVKVTSPYGNNLHSKENVTKGQFAFTAEE-----SGMYEACFTADVPGHKPETKRSIDLDWK 119 (210)
T ss_pred eEEEEEEcCCCceeehhhccccceEEEEecc-----CCcEEEEEecccCCCCCCcceEEEEEee
Confidence 4888888999999999999999999887754 567777766521 1 3 2478888885
Done!